Query 026469
Match_columns 238
No_of_seqs 158 out of 631
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 14:18:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026469.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026469hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jfi_B DR1 protein, transcript 100.0 3.8E-29 1.3E-33 214.1 11.6 97 56-153 9-105 (179)
2 2byk_B Chrac-14; nucleosome sl 100.0 5.1E-29 1.7E-33 202.6 11.0 103 57-159 4-106 (128)
3 1n1j_A NF-YB; histone-like PAI 100.0 7.8E-29 2.7E-33 189.8 10.6 92 56-147 2-93 (93)
4 3b0c_W CENP-W, centromere prot 99.8 1.6E-21 5.5E-26 144.8 7.6 69 60-129 2-70 (76)
5 1f1e_A Histone fold protein; a 99.8 1.6E-20 5.6E-25 157.3 8.1 74 62-136 4-77 (154)
6 3b0c_T CENP-T, centromere prot 99.8 2.5E-19 8.5E-24 142.5 9.0 91 58-150 3-95 (111)
7 1b67_A Protein (histone HMFA); 99.8 4.6E-19 1.6E-23 128.1 8.1 66 62-129 2-67 (68)
8 1f1e_A Histone fold protein; a 99.7 1.6E-17 5.4E-22 139.2 8.6 75 53-129 73-147 (154)
9 2hue_C Histone H4; mini beta s 99.7 2.4E-17 8.4E-22 124.6 7.3 78 55-134 3-80 (84)
10 1id3_B Histone H4; nucleosome 99.7 4.5E-17 1.5E-21 127.7 7.8 78 55-134 21-98 (102)
11 2byk_A Chrac-16; nucleosome sl 99.7 7.5E-18 2.6E-22 139.0 3.0 98 57-155 14-115 (140)
12 4g92_C HAPE; transcription fac 99.6 4.5E-16 1.5E-20 124.7 7.6 76 59-135 38-113 (119)
13 1tzy_D Histone H4-VI; histone- 99.6 5.3E-16 1.8E-20 121.2 7.8 78 55-134 22-99 (103)
14 1n1j_B NF-YC; histone-like PAI 99.6 7.2E-16 2.5E-20 119.2 7.3 79 57-136 14-92 (97)
15 2yfw_B Histone H4, H4; cell cy 99.6 7.5E-16 2.6E-20 120.5 7.2 78 55-134 22-99 (103)
16 1ku5_A HPHA, archaeal histon; 99.6 1.9E-15 6.6E-20 110.0 7.7 64 62-127 6-69 (70)
17 1jfi_A Transcription regulator 99.3 1.3E-12 4.3E-17 101.4 5.9 79 58-137 7-85 (98)
18 2hue_B Histone H3; mini beta s 99.2 7.7E-11 2.7E-15 88.8 7.6 71 60-130 1-74 (77)
19 2yfv_A Histone H3-like centrom 99.1 1.9E-10 6.4E-15 90.4 6.9 71 57-127 22-98 (100)
20 3nqj_A Histone H3-like centrom 99.0 4.6E-10 1.6E-14 85.5 7.1 70 61-130 2-76 (82)
21 3r45_A Histone H3-like centrom 99.0 4.2E-10 1.4E-14 94.7 6.7 72 57-128 72-148 (156)
22 3nqu_A Histone H3-like centrom 99.0 4.7E-10 1.6E-14 93.0 6.6 75 57-131 56-135 (140)
23 1tzy_C Histone H3; histone-fol 99.0 7.3E-10 2.5E-14 91.3 7.3 74 57-130 57-133 (136)
24 1taf_B TFIID TBP associated fa 98.9 3.7E-09 1.3E-13 78.3 8.2 65 61-127 5-69 (70)
25 4dra_A Centromere protein S; D 98.8 9.7E-09 3.3E-13 82.5 8.0 77 67-149 32-109 (113)
26 3vh5_A CENP-S; histone fold, c 98.8 1.3E-08 4.5E-13 84.3 8.2 77 67-149 24-101 (140)
27 3b0b_B CENP-S, centromere prot 98.7 2.4E-08 8.1E-13 79.3 8.0 76 67-148 24-100 (107)
28 3v9r_A MHF1, uncharacterized p 98.7 3E-08 1E-12 76.6 7.5 63 67-129 17-80 (90)
29 1taf_A TFIID TBP associated fa 98.7 8E-08 2.7E-12 70.8 7.7 61 66-128 5-65 (68)
30 2ly8_A Budding yeast chaperone 98.6 4.3E-08 1.5E-12 79.4 5.8 55 80-134 63-117 (121)
31 2nqb_C Histone H2A; nucleosome 98.5 4E-07 1.4E-11 73.5 8.1 69 59-128 20-88 (123)
32 2l5a_A Histone H3-like centrom 98.5 8.4E-08 2.9E-12 85.2 3.9 61 68-130 167-227 (235)
33 1f66_C Histone H2A.Z; nucleoso 98.5 4.3E-07 1.5E-11 73.8 7.7 71 58-128 23-93 (128)
34 1tzy_A Histone H2A-IV; histone 98.4 5.4E-07 1.8E-11 73.3 8.1 69 59-128 22-90 (129)
35 2f8n_G Core histone macro-H2A. 98.4 6.2E-07 2.1E-11 72.1 8.0 69 59-128 19-87 (120)
36 1id3_C Histone H2A.1; nucleoso 98.4 4.9E-07 1.7E-11 73.8 7.3 70 58-128 21-90 (131)
37 2f8n_K Histone H2A type 1; nuc 98.4 8.5E-07 2.9E-11 74.0 7.7 70 58-128 40-109 (149)
38 2jss_A Chimera of histone H2B. 98.2 2.6E-06 9.1E-11 72.7 7.7 70 59-128 102-171 (192)
39 2nqb_D Histone H2B; nucleosome 98.2 3.9E-06 1.3E-10 68.3 7.3 63 66-129 37-99 (123)
40 1tzy_B Histone H2B; histone-fo 98.1 5.2E-06 1.8E-10 67.8 7.3 63 66-129 40-102 (126)
41 2l5a_A Histone H3-like centrom 98.1 4.6E-06 1.6E-10 74.2 6.8 71 60-130 9-85 (235)
42 2jss_A Chimera of histone H2B. 97.8 3.7E-05 1.3E-09 65.6 7.7 63 66-129 7-69 (192)
43 4dra_E Centromere protein X; D 97.8 8.8E-05 3E-09 56.7 8.5 70 59-128 9-79 (84)
44 1h3o_B Transcription initiatio 97.7 0.00012 4.3E-09 54.8 8.2 66 62-128 5-70 (76)
45 3b0b_C CENP-X, centromere prot 97.7 0.00016 5.6E-09 54.7 8.2 70 59-128 5-75 (81)
46 1bh9_B TAFII28; histone fold, 97.4 0.00049 1.7E-08 52.8 7.9 67 62-130 16-83 (89)
47 3v9r_B MHF2, uncharacterized p 96.0 0.011 3.7E-07 45.7 5.5 48 62-109 1-49 (88)
48 2ly8_A Budding yeast chaperone 96.0 0.0076 2.6E-07 48.7 4.8 53 62-114 1-59 (121)
49 3uk6_A RUVB-like 2; hexameric 90.8 0.4 1.4E-05 41.4 6.1 66 63-128 259-329 (368)
50 3ksy_A SOS-1, SON of sevenless 86.5 1.7 5.9E-05 44.7 8.2 67 59-127 101-167 (1049)
51 1fnn_A CDC6P, cell division co 84.7 4.1 0.00014 34.8 8.5 77 63-139 193-284 (389)
52 2v1u_A Cell division control p 83.3 1.4 4.7E-05 37.5 4.9 69 64-132 202-279 (387)
53 2c9o_A RUVB-like 1; hexameric 82.2 1.9 6.5E-05 39.5 5.7 66 63-128 366-436 (456)
54 2qby_A CDC6 homolog 1, cell di 77.3 3.8 0.00013 34.7 5.6 74 63-136 197-279 (386)
55 3kw6_A 26S protease regulatory 74.5 2.5 8.5E-05 29.6 3.2 32 98-129 42-73 (78)
56 1wwi_A Hypothetical protein TT 70.3 10 0.00034 31.6 6.3 75 62-148 2-76 (148)
57 3k1j_A LON protease, ATP-depen 69.0 19 0.00065 34.2 8.9 49 80-128 313-374 (604)
58 1g8p_A Magnesium-chelatase 38 68.5 19 0.00066 30.3 7.9 51 79-129 265-322 (350)
59 2r44_A Uncharacterized protein 68.2 21 0.0007 30.4 8.1 51 79-129 224-297 (331)
60 1k6k_A ATP-dependent CLP prote 66.9 12 0.0004 28.3 5.7 34 82-127 2-35 (143)
61 2dzn_B 26S protease regulatory 65.6 5.4 0.00018 28.3 3.4 27 103-129 42-68 (82)
62 2qby_B CDC6 homolog 3, cell di 64.6 6.8 0.00023 33.5 4.4 66 63-130 197-271 (384)
63 3vlf_B 26S protease regulatory 64.5 5.7 0.0002 28.8 3.4 34 98-131 40-73 (88)
64 1r4v_A Hypothetical protein AQ 64.4 10 0.00035 32.2 5.3 75 62-148 26-100 (171)
65 2nxo_A Hypothetical protein SC 63.8 35 0.0012 28.7 8.6 34 116-150 234-267 (291)
66 2krk_A 26S protease regulatory 62.3 6.1 0.00021 28.8 3.2 30 100-129 52-81 (86)
67 3aji_B S6C, proteasome (prosom 61.9 5.3 0.00018 28.2 2.7 33 98-130 40-72 (83)
68 2lfc_A Fumarate reductase, fla 61.3 21 0.00073 28.3 6.5 36 115-152 91-126 (160)
69 1khy_A CLPB protein; alpha hel 60.1 19 0.00066 27.2 5.8 38 81-130 5-42 (148)
70 2chg_A Replication factor C sm 58.8 14 0.00047 28.1 4.8 64 62-127 160-224 (226)
71 2y1q_A CLPC N-domain, negative 57.9 9.6 0.00033 29.1 3.8 38 81-130 5-42 (150)
72 3fh2_A Probable ATP-dependent 56.7 12 0.00041 28.8 4.2 37 81-129 6-42 (146)
73 3bos_A Putative DNA replicatio 54.9 24 0.00081 27.5 5.7 63 64-127 175-241 (242)
74 1in4_A RUVB, holliday junction 53.1 36 0.0012 29.5 7.1 69 65-133 182-254 (334)
75 3h4m_A Proteasome-activating n 53.0 17 0.00058 30.0 4.7 33 97-129 226-258 (285)
76 3fes_A ATP-dependent CLP endop 52.7 13 0.00044 28.7 3.8 39 80-130 6-44 (145)
77 2i6e_A Hypothetical protein; N 49.9 63 0.0022 27.9 8.1 61 85-149 218-278 (301)
78 1njg_A DNA polymerase III subu 47.7 25 0.00085 26.8 4.6 64 63-127 185-249 (250)
79 3uif_A Sulfonate ABC transport 44.9 41 0.0014 28.6 6.0 97 84-182 215-327 (348)
80 3fwb_A Cell division control p 43.0 90 0.0031 22.4 8.5 38 104-141 100-137 (161)
81 1w5s_A Origin recognition comp 42.5 62 0.0021 27.7 6.8 69 62-130 214-294 (412)
82 5pal_A Parvalbumin; calcium-bi 39.1 92 0.0032 21.4 6.3 71 63-144 6-88 (109)
83 3vfd_A Spastin; ATPase, microt 38.2 1.3E+02 0.0045 26.3 8.4 69 64-132 283-368 (389)
84 2i7a_A Calpain 13; calcium-dep 38.1 1.4E+02 0.0048 23.2 9.8 64 63-132 43-111 (174)
85 1lv7_A FTSH; alpha/beta domain 38.0 26 0.00088 28.6 3.6 64 66-130 185-253 (257)
86 2k27_A Paired box protein PAX- 36.5 1.4E+02 0.0047 22.8 7.4 14 61-74 51-64 (159)
87 4b4t_K 26S protease regulatory 36.5 22 0.00074 33.3 3.2 32 97-128 382-413 (428)
88 3zri_A CLPB protein, CLPV; cha 36.2 28 0.00094 28.3 3.4 38 81-130 24-61 (171)
89 1k6k_A ATP-dependent CLP prote 34.7 84 0.0029 23.4 5.8 38 80-129 78-115 (143)
90 3fh2_A Probable ATP-dependent 34.5 52 0.0018 25.1 4.6 39 80-130 80-118 (146)
91 3pvs_A Replication-associated 33.8 59 0.002 30.0 5.6 69 62-130 164-245 (447)
92 1bh9_A TAFII18; histone fold, 33.7 1E+02 0.0035 20.3 6.0 39 68-107 6-44 (45)
93 1hqc_A RUVB; extended AAA-ATPa 33.6 47 0.0016 27.7 4.5 70 63-132 168-241 (324)
94 4b4t_I 26S protease regulatory 33.2 30 0.001 32.9 3.5 67 61-128 350-422 (437)
95 3b9p_A CG5977-PA, isoform A; A 32.7 1.3E+02 0.0046 24.7 7.2 57 80-136 207-279 (297)
96 2zbk_B Type 2 DNA topoisomeras 32.6 23 0.00079 34.0 2.7 57 73-129 427-485 (530)
97 1sxj_D Activator 1 41 kDa subu 32.4 40 0.0014 28.3 3.9 68 62-130 191-264 (353)
98 4b4t_H 26S protease regulatory 32.1 30 0.001 33.1 3.4 32 97-128 418-449 (467)
99 4b4t_L 26S protease subunit RP 32.1 32 0.0011 32.3 3.6 32 97-128 390-421 (437)
100 3mse_B Calcium-dependent prote 32.0 1.6E+02 0.0056 22.1 7.8 29 104-132 43-71 (180)
101 3pfi_A Holliday junction ATP-d 31.9 79 0.0027 26.6 5.7 70 63-132 184-257 (338)
102 3pm8_A PFCDPK2, calcium-depend 31.9 73 0.0025 24.8 5.2 35 106-140 63-97 (197)
103 4b4t_M 26S protease regulatory 31.5 33 0.0011 32.2 3.5 33 97-129 390-422 (434)
104 4b4t_J 26S protease regulatory 31.4 35 0.0012 31.9 3.7 32 97-128 357-388 (405)
105 2f3n_A SH3 and multiple ankyri 31.4 25 0.00087 24.7 2.1 23 117-139 5-27 (76)
106 1ofh_A ATP-dependent HSL prote 31.3 64 0.0022 26.4 4.9 69 63-131 202-301 (310)
107 2qz4_A Paraplegin; AAA+, SPG7, 30.4 20 0.0007 28.8 1.7 33 97-129 217-249 (262)
108 3ox6_A Calcium-binding protein 30.3 1.4E+02 0.0049 20.9 9.6 40 104-143 92-132 (153)
109 1uxc_A FRUR (1-57), fructose r 30.0 62 0.0021 22.3 4.0 35 62-97 11-45 (65)
110 3sxp_A ADP-L-glycero-D-mannohe 29.4 16 0.00056 31.2 1.0 30 120-149 293-325 (362)
111 2kru_A Light-independent proto 28.8 37 0.0013 24.3 2.6 51 79-130 3-54 (63)
112 1jr3_A DNA polymerase III subu 28.6 45 0.0015 28.2 3.6 68 62-130 177-245 (373)
113 3fes_A ATP-dependent CLP endop 28.5 49 0.0017 25.3 3.5 40 79-130 79-118 (145)
114 1wlz_A DJBP, CAP-binding prote 28.4 1.4E+02 0.0048 20.4 5.7 29 104-132 28-56 (105)
115 3bq7_A Diacylglycerol kinase d 28.1 31 0.0011 24.6 2.1 24 116-139 9-32 (81)
116 4ds7_A Calmodulin, CAM; protei 27.7 1.6E+02 0.0054 20.6 9.4 42 104-145 88-129 (147)
117 1tiz_A Calmodulin-related prot 26.0 95 0.0033 19.0 4.1 35 106-140 7-41 (67)
118 2d8c_A Phosphatidylcholine:cer 25.8 25 0.00087 26.5 1.4 23 116-138 19-41 (97)
119 1ixz_A ATP-dependent metallopr 25.5 47 0.0016 26.9 3.1 58 69-127 192-254 (254)
120 3f8t_A Predicted ATPase involv 25.5 1.8E+02 0.0063 28.2 7.6 67 61-127 392-481 (506)
121 3bow_A Calpain-2 catalytic sub 23.5 3.3E+02 0.011 26.5 9.1 73 60-132 545-637 (714)
122 1iy2_A ATP-dependent metallopr 23.5 54 0.0019 27.2 3.1 60 67-127 214-278 (278)
123 3fs7_A Parvalbumin, thymic; ca 23.3 1.8E+02 0.0062 19.8 8.1 71 62-143 6-88 (109)
124 1u5t_A Appears to BE functiona 22.8 77 0.0026 27.7 4.1 38 94-131 88-143 (233)
125 2chq_A Replication factor C sm 22.5 87 0.003 25.6 4.2 65 63-129 161-226 (319)
126 2l09_A ASR4154 protein; proto- 22.2 43 0.0015 23.9 1.9 49 80-129 3-52 (62)
127 3sg6_A Gcamp2, myosin light ch 22.1 3E+02 0.01 25.8 8.2 42 104-145 389-430 (450)
128 3oq9_A Tumor necrosis factor r 22.0 90 0.0031 23.1 3.8 72 62-143 9-85 (86)
129 1jr3_D DNA polymerase III, del 22.0 1E+02 0.0035 26.3 4.7 67 63-129 142-209 (343)
130 2lmt_A Calmodulin-related prot 21.6 2E+02 0.0068 21.0 5.7 41 103-143 86-126 (148)
131 3f9v_A Minichromosome maintena 21.6 30 0.001 33.2 1.3 48 81-128 521-586 (595)
132 1alv_A Calpain, S-camld; calci 21.5 2.3E+02 0.0079 20.9 6.1 76 62-142 43-119 (173)
133 2gle_A Neurabin-1; SAM domain, 21.3 36 0.0012 23.5 1.4 22 117-138 7-28 (74)
134 1kw4_A Polyhomeotic; SAM domai 21.3 48 0.0017 24.4 2.1 25 116-140 16-41 (89)
135 1avs_A Troponin C; muscle cont 21.2 78 0.0027 21.2 3.1 35 106-140 26-60 (90)
136 2q2e_B Type 2 DNA topoisomeras 21.1 30 0.001 34.1 1.2 56 73-128 435-492 (621)
137 2kz2_A Calmodulin, CAM; TR2C, 20.9 1.3E+02 0.0046 20.7 4.4 27 106-132 35-61 (94)
138 3pxg_A Negative regulator of g 20.8 1.2E+02 0.0041 27.8 5.1 46 81-138 5-50 (468)
139 3h4s_E KCBP interacting Ca2+-b 20.6 1.2E+02 0.0042 22.2 4.3 28 104-131 44-71 (135)
140 3cuq_A Vacuolar-sorting protei 20.5 55 0.0019 28.6 2.6 35 95-129 70-127 (234)
141 2y1q_A CLPC N-domain, negative 20.3 88 0.003 23.5 3.5 38 80-129 78-115 (150)
142 2obh_A Centrin-2; DNA repair c 20.2 2.5E+02 0.0084 20.2 5.9 81 62-142 38-121 (143)
143 1khy_A CLPB protein; alpha hel 20.1 85 0.0029 23.5 3.4 35 81-127 82-116 (148)
144 3d8b_A Fidgetin-like protein 1 20.1 3E+02 0.01 23.8 7.4 64 67-130 255-335 (357)
No 1
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=99.96 E-value=3.8e-29 Score=214.10 Aligned_cols=97 Identities=31% Similarity=0.637 Sum_probs=91.5
Q ss_pred ccccccCCchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhhcCCCcch
Q 026469 56 VREQDRFMPIANVIRIMRKILPQHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYI 135 (238)
Q Consensus 56 v~e~D~~LPkA~I~RImKeaLp~~~rISkDAkeaLqecaseFI~~LaseAne~A~~~kRKTItaEDVL~ALe~LGF~dyv 135 (238)
-.++|+.||+|+|.||||++|| +++||+||+++|++||++||+||+++|+++|.+++||||+++||++||++|||++|+
T Consensus 9 ~~~eD~~LP~A~V~RImK~alp-~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~~LgF~~fv 87 (179)
T 1jfi_B 9 GNDDDLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLGFGSYI 87 (179)
T ss_dssp ---CCCCCCHHHHHHHHHHHST-TCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHTTGGGH
T ss_pred CchhhhhcCHHHHHHHHHHhCC-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcChHHHH
Confidence 4678999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhc
Q 026469 136 EPLTVYLHRYREMEGERG 153 (238)
Q Consensus 136 e~Lk~~L~~yRE~~~~rk 153 (238)
++|+.+|++||++++.|+
T Consensus 88 ~~lk~~L~~yre~~~~kk 105 (179)
T 1jfi_B 88 SEVKEVLQECKTVALKRR 105 (179)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCc
Confidence 999999999999987654
No 2
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=99.96 E-value=5.1e-29 Score=202.55 Aligned_cols=103 Identities=28% Similarity=0.508 Sum_probs=88.2
Q ss_pred cccccCCchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhhcCCCcchH
Q 026469 57 REQDRFMPIANVIRIMRKILPQHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIE 136 (238)
Q Consensus 57 ~e~D~~LPkA~I~RImKeaLp~~~rISkDAkeaLqecaseFI~~LaseAne~A~~~kRKTItaEDVL~ALe~LGF~dyve 136 (238)
+++|+.||+|+|.||||+++|++.+||+||+.+|++||++||+||+++|+++|.+++||||+++||++||+.+||.+|++
T Consensus 4 ~~~d~~LP~A~I~rImK~~~pd~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l~f~~fl~ 83 (128)
T 2byk_B 4 RIEDLNLPNAVIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTELDFESFVP 83 (128)
T ss_dssp -------CCSHHHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCTTTHH
T ss_pred ccccccCCHHHHHHHHHHhCcccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCcHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCC
Q 026469 137 PLTVYLHRYREMEGERGSIRGEP 159 (238)
Q Consensus 137 ~Lk~~L~~yRE~~~~rks~k~~~ 159 (238)
+|+.+|++||+.++.|++.+...
T Consensus 84 ~lk~~l~~yr~~~~~kk~~~~~~ 106 (128)
T 2byk_B 84 SLTQDLEVYRKVVKEKKESKASK 106 (128)
T ss_dssp HHHHHHHHHHHHHTTC-------
T ss_pred HHHHHHHHHHHHHHhhhhhhhcc
Confidence 99999999999998888765443
No 3
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.96 E-value=7.8e-29 Score=189.82 Aligned_cols=92 Identities=64% Similarity=1.107 Sum_probs=86.0
Q ss_pred ccccccCCchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhhcCCCcch
Q 026469 56 VREQDRFMPIANVIRIMRKILPQHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYI 135 (238)
Q Consensus 56 v~e~D~~LPkA~I~RImKeaLp~~~rISkDAkeaLqecaseFI~~LaseAne~A~~~kRKTItaEDVL~ALe~LGF~dyv 135 (238)
++++|+.||+|+|.||||+.+|++.+||+||+++|++|+++||.+|+++|+++|++++||||+++||++||++|||.+|+
T Consensus 2 ~~~~d~~LP~a~i~ri~K~~~~~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~~l~F~~~i 81 (93)
T 1n1j_A 2 FREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYV 81 (93)
T ss_dssp -----CCCCHHHHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHTTCGGGH
T ss_pred CCcccccCChhHHHHHHHHhCCccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCcHhhH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 026469 136 EPLTVYLHRYRE 147 (238)
Q Consensus 136 e~Lk~~L~~yRE 147 (238)
++++.+|++||+
T Consensus 82 ~~~~~~l~~~r~ 93 (93)
T 1n1j_A 82 EPLKLYLQKFRE 93 (93)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhC
Confidence 999999999985
No 4
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=99.85 E-value=1.6e-21 Score=144.84 Aligned_cols=69 Identities=17% Similarity=0.302 Sum_probs=64.7
Q ss_pred ccCCchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhhc
Q 026469 60 DRFMPIANVIRIMRKILPQHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKL 129 (238)
Q Consensus 60 D~~LPkA~I~RImKeaLp~~~rISkDAkeaLqecaseFI~~LaseAne~A~~~kRKTItaEDVL~ALe~L 129 (238)
...||+|+|.||||+++| +++||+||+++|++|+++||++|+++|++.|.+++||||+++||++|++++
T Consensus 2 ~~~LP~A~V~rI~K~~~p-~~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~~l 70 (76)
T 3b0c_W 2 RRTVPRGTLRKIIKKHKP-HLRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAKVI 70 (76)
T ss_dssp --CCCHHHHHHHHHHHCT-TCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHH
T ss_pred CCcccccHHHHHHHHhCC-CCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 368999999999999999 799999999999999999999999999999999999999999999998754
No 5
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=99.82 E-value=1.6e-20 Score=157.27 Aligned_cols=74 Identities=23% Similarity=0.321 Sum_probs=71.7
Q ss_pred CCchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhhcCCCcchH
Q 026469 62 FMPIANVIRIMRKILPQHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIE 136 (238)
Q Consensus 62 ~LPkA~I~RImKeaLp~~~rISkDAkeaLqecaseFI~~LaseAne~A~~~kRKTItaEDVL~ALe~LGF~dyve 136 (238)
.||+++|.||||++||. .|||+||+++|++|+++|+.+|+++|+++|+++|||||+++||++||..|||++|++
T Consensus 4 ~LP~a~V~Riik~~lg~-~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~~~lg~~~v~d 77 (154)
T 1f1e_A 4 ELPKAAIERIFRQGIGE-RRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALADVLMVEGVED 77 (154)
T ss_dssp CCCHHHHHHHHHTTSTT-CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHHHTCTTSTT
T ss_pred cCCccHHHHHHHhcCCc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcccccCCc
Confidence 69999999999999985 999999999999999999999999999999999999999999999999999998865
No 6
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=99.79 E-value=2.5e-19 Score=142.46 Aligned_cols=91 Identities=21% Similarity=0.334 Sum_probs=79.9
Q ss_pred ccccCCchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhhcCCCcchHH
Q 026469 58 EQDRFMPIANVIRIMRKILPQHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEP 137 (238)
Q Consensus 58 e~D~~LPkA~I~RImKeaLp~~~rISkDAkeaLqecaseFI~~LaseAne~A~~~kRKTItaEDVL~ALe~LGF~dyve~ 137 (238)
.+|..||+++|.||||+.. ..+||+|++++|++|+++|+..|+.+|..+|+++|||||+++||+.||+++|+..|+.+
T Consensus 3 ~~d~~lP~a~I~Ri~r~~g--~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr~g~~~~~~~ 80 (111)
T 3b0c_T 3 TREPEIASSLIKQIFSHYV--KTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQGLVTDKMP 80 (111)
T ss_dssp -------CHHHHHHHHHHH--CSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTSSBTTBC
T ss_pred CCCCCCCHHHHHHHHHHCC--CCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHCCCcccccc
Confidence 4688999999999999994 59999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH--HHHHh
Q 026469 138 LTVYLHRY--REMEG 150 (238)
Q Consensus 138 Lk~~L~~y--RE~~~ 150 (238)
++.++++| +|..+
T Consensus 81 l~~l~~~~lp~E~~~ 95 (111)
T 3b0c_T 81 LHVLVERHLPLEYRK 95 (111)
T ss_dssp HHHHHHHHSCHHHHH
T ss_pred HHHHHHHhCcHHHHH
Confidence 99999999 55443
No 7
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=99.78 E-value=4.6e-19 Score=128.06 Aligned_cols=66 Identities=32% Similarity=0.404 Sum_probs=63.9
Q ss_pred CCchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhhc
Q 026469 62 FMPIANVIRIMRKILPQHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKL 129 (238)
Q Consensus 62 ~LPkA~I~RImKeaLp~~~rISkDAkeaLqecaseFI~~LaseAne~A~~~kRKTItaEDVL~ALe~L 129 (238)
.||+++|.||||+. ++.+||+||+++|++|+++||.+|+.+|+++|.++|||||+++||..|+++|
T Consensus 2 ~lP~a~v~Ri~k~~--~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~~l 67 (68)
T 1b67_A 2 ELPIAPIGRIIKNA--GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKMF 67 (68)
T ss_dssp CSCHHHHHHHHHHT--TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGGGG
T ss_pred CCCccHHHHHHhcC--CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence 59999999999999 5799999999999999999999999999999999999999999999999987
No 8
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=99.71 E-value=1.6e-17 Score=139.20 Aligned_cols=75 Identities=23% Similarity=0.241 Sum_probs=70.6
Q ss_pred cccccccccCCchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhhc
Q 026469 53 ECTVREQDRFMPIANVIRIMRKILPQHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKL 129 (238)
Q Consensus 53 e~~v~e~D~~LPkA~I~RImKeaLp~~~rISkDAkeaLqecaseFI~~LaseAne~A~~~kRKTItaEDVL~ALe~L 129 (238)
|+++..+|+.||+++|.||||+. ...|||+||++.|++|+++|+.+|+++|.++|++++||||+++||++||+..
T Consensus 73 ~~v~d~~~l~lP~a~V~Ri~k~~--g~~RVS~~A~~~l~~~le~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~~ 147 (154)
T 1f1e_A 73 EGVEDYDGELFGRATVRRILKRA--GIERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITYS 147 (154)
T ss_dssp TTSTTCCSCCCCHHHHHHHHHHT--TCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred ccCCccccccCCccHHHHHHHHc--CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence 56778899999999999999999 4589999999999999999999999999999999999999999999999853
No 9
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=99.70 E-value=2.4e-17 Score=124.65 Aligned_cols=78 Identities=22% Similarity=0.289 Sum_probs=73.4
Q ss_pred cccccccCCchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhhcCCCcc
Q 026469 55 TVREQDRFMPIANVIRIMRKILPQHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDY 134 (238)
Q Consensus 55 ~v~e~D~~LPkA~I~RImKeaLp~~~rISkDAkeaLqecaseFI~~LaseAne~A~~~kRKTItaEDVL~ALe~LGF~dy 134 (238)
+.+.....||+++|.||+|.... .+||+|+.+.|++|+++|+..|+.+|.++|++++||||+++||..||+.+|+.-|
T Consensus 3 ~~r~~~~~ip~~~I~Riar~~Gv--~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~g~~lY 80 (84)
T 2hue_C 3 VLRDNIQGITKPAIRRLARRGGV--KRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 80 (84)
T ss_dssp CGGGGCCSSCHHHHHHHHHHTTC--CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTTCEEEE
T ss_pred cccccCCCCCHHHHHHHHHHcCc--hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCCCCC
Confidence 45677888999999999999976 8999999999999999999999999999999999999999999999999998766
No 10
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=99.69 E-value=4.5e-17 Score=127.74 Aligned_cols=78 Identities=19% Similarity=0.301 Sum_probs=71.8
Q ss_pred cccccccCCchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhhcCCCcc
Q 026469 55 TVREQDRFMPIANVIRIMRKILPQHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDY 134 (238)
Q Consensus 55 ~v~e~D~~LPkA~I~RImKeaLp~~~rISkDAkeaLqecaseFI~~LaseAne~A~~~kRKTItaEDVL~ALe~LGF~dy 134 (238)
+++.....||+++|.||+|.... .+||+|+.+.|++|+++|+..|+.+|.++|++++||||+++||.+||+.++|..|
T Consensus 21 ~~r~~i~~ip~~~I~Rlar~~Gv--~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr~g~~lY 98 (102)
T 1id3_B 21 ILRDNIQGITKPAIRRLARRGGV--KRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGRTLY 98 (102)
T ss_dssp ---CCGGGSCHHHHHHHHHHTTC--CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTCCEE
T ss_pred HHHhccCCCCHHHHHHHHHHcCc--hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCCCCC
Confidence 45677788999999999999876 8999999999999999999999999999999999999999999999999998766
No 11
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=99.68 E-value=7.5e-18 Score=138.97 Aligned_cols=98 Identities=18% Similarity=0.313 Sum_probs=62.1
Q ss_pred cccccCCchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCccCcccHHHHHhhc---CCC
Q 026469 57 REQDRFMPIANVIRIMRKILPQHAKISDDAKETIQECVSEYISFITGEANERC-QREQRKTITAEDVLWAMSKL---GFD 132 (238)
Q Consensus 57 ~e~D~~LPkA~I~RImKeaLp~~~rISkDAkeaLqecaseFI~~LaseAne~A-~~~kRKTItaEDVL~ALe~L---GF~ 132 (238)
...++.||.++|.||||.. |+..+||++|..+|++|++.||.+|+..|+..| +..+||||+++||.+|+... +|.
T Consensus 14 ~~~~~~LPlaRIKrIMK~d-pdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~~~e~~dFL 92 (140)
T 2byk_A 14 PTAETFLPLSRVRTIMKSS-MDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVNKNKNLEFL 92 (140)
T ss_dssp ---------------CCSS-SSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHHTCSTTGGG
T ss_pred cccCCCCCHHHHHHHHhcC-cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHhcCchhhhH
Confidence 4567899999999999997 778899999999999999999999999999999 99999999999999999854 555
Q ss_pred cchHHHHHHHHHHHHHHhhhcCC
Q 026469 133 DYIEPLTVYLHRYREMEGERGSI 155 (238)
Q Consensus 133 dyve~Lk~~L~~yRE~~~~rks~ 155 (238)
.++-|.+.++.+|+++.+.+++.
T Consensus 93 ~divP~ki~l~~~~~~~~~~~~~ 115 (140)
T 2byk_A 93 LQIVPQKIRVHQFQEMLRLNRSA 115 (140)
T ss_dssp TTTSCSCC---------------
T ss_pred hccccchhhHHHHHHHHHhcccc
Confidence 55558899999999988765543
No 12
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=99.63 E-value=4.5e-16 Score=124.69 Aligned_cols=76 Identities=22% Similarity=0.331 Sum_probs=70.0
Q ss_pred cccCCchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhhcCCCcch
Q 026469 59 QDRFMPIANVIRIMRKILPQHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYI 135 (238)
Q Consensus 59 ~D~~LPkA~I~RImKeaLp~~~rISkDAkeaLqecaseFI~~LaseAne~A~~~kRKTItaEDVL~ALe~LGF~dyv 135 (238)
.+..||+|+|.||||.. |+..+||+||..+|++|+++||.+|+.+|+..|+..+||||+++||..|++..+..+|+
T Consensus 38 k~~~lPvaRIkrImK~d-~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krktI~~~di~~Av~~~e~~dFL 113 (119)
T 4g92_C 38 KIHQLPLARIKKVMKAD-PEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQRSDIAAALSKSDMFDFL 113 (119)
T ss_dssp SCCSSCHHHHHHHHHTS-TTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGGGG
T ss_pred ccCCCCHHHHHHHHhhC-CccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCHHHHHHHHhcCchhhHH
Confidence 46689999999999975 88899999999999999999999999999999999999999999999999877655564
No 13
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=99.63 E-value=5.3e-16 Score=121.22 Aligned_cols=78 Identities=22% Similarity=0.289 Sum_probs=73.2
Q ss_pred cccccccCCchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhhcCCCcc
Q 026469 55 TVREQDRFMPIANVIRIMRKILPQHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDY 134 (238)
Q Consensus 55 ~v~e~D~~LPkA~I~RImKeaLp~~~rISkDAkeaLqecaseFI~~LaseAne~A~~~kRKTItaEDVL~ALe~LGF~dy 134 (238)
+.++.+..||+++|.||+|.... .+||+|+.+.|++|+++|+..|+.+|..+|++++||||+++||.+||+.+|++.|
T Consensus 22 ~~r~~~~gip~~~I~Rlar~~G~--~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~~g~~lY 99 (103)
T 1tzy_D 22 VLRDNIQGITKPAIRRLARRGGV--KRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99 (103)
T ss_dssp CCCCGGGGSCHHHHHHHHHHTTC--CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTCEEE
T ss_pred chhhhcccCCHHHHHHHHHHcCc--cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHcCCCCc
Confidence 45777778999999999999976 7999999999999999999999999999999999999999999999999998765
No 14
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.61 E-value=7.2e-16 Score=119.19 Aligned_cols=79 Identities=20% Similarity=0.262 Sum_probs=69.5
Q ss_pred cccccCCchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhhcCCCcchH
Q 026469 57 REQDRFMPIANVIRIMRKILPQHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIE 136 (238)
Q Consensus 57 ~e~D~~LPkA~I~RImKeaLp~~~rISkDAkeaLqecaseFI~~LaseAne~A~~~kRKTItaEDVL~ALe~LGF~dyve 136 (238)
...+..||.|.|.||||.. ++..+||+||..+|++|++.||.+|+.+|++.|++.+||||+++||..|++..++.+|+.
T Consensus 14 ~~~~~~lP~arIkrImK~~-~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~~Av~~~e~~~FL~ 92 (97)
T 1n1j_B 14 DFRVQELPLARIKKIMKLD-EDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLI 92 (97)
T ss_dssp ------CCHHHHHHHHTTS-TTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGGGGT
T ss_pred CcCCCcCCHHHHHHHHccC-ccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHhcCcHHHHHH
Confidence 4567789999999999998 666799999999999999999999999999999999999999999999999998888864
No 15
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=99.61 E-value=7.5e-16 Score=120.53 Aligned_cols=78 Identities=21% Similarity=0.309 Sum_probs=64.8
Q ss_pred cccccccCCchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhhcCCCcc
Q 026469 55 TVREQDRFMPIANVIRIMRKILPQHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDY 134 (238)
Q Consensus 55 ~v~e~D~~LPkA~I~RImKeaLp~~~rISkDAkeaLqecaseFI~~LaseAne~A~~~kRKTItaEDVL~ALe~LGF~dy 134 (238)
+.++.+..||+++|.||+|.... .+||+|+.+.|++|+++|+..|+.+|..+|++++||||+++||.+||+.+|+..|
T Consensus 22 ~~r~~~~gip~~~I~Rlar~~G~--~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~~g~~lY 99 (103)
T 2yfw_B 22 ILRDNIQGITKPAIRRLARRGGV--KRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTLY 99 (103)
T ss_dssp --------CCHHHHHHHHHHTTC--CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC----
T ss_pred hhhhhhccCCHHHHHHHHHHcCc--cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCCCCc
Confidence 44677778999999999999976 7999999999999999999999999999999999999999999999999998766
No 16
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=99.60 E-value=1.9e-15 Score=110.04 Aligned_cols=64 Identities=33% Similarity=0.444 Sum_probs=61.5
Q ss_pred CCchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHh
Q 026469 62 FMPIANVIRIMRKILPQHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMS 127 (238)
Q Consensus 62 ~LPkA~I~RImKeaLp~~~rISkDAkeaLqecaseFI~~LaseAne~A~~~kRKTItaEDVL~ALe 127 (238)
.||+++|.||+|+.. ..+||++++++|++|+++|+..|+.+|+.+|+++|||||+++||..|++
T Consensus 6 ~lp~a~v~Rl~r~~g--~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~ 69 (70)
T 1ku5_A 6 ELPIAPVDRLIRKAG--AERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIK 69 (70)
T ss_dssp CSCHHHHHHHHHHTT--CSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHT
T ss_pred cCChHHHHHHHHHcC--cceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 699999999999974 5899999999999999999999999999999999999999999999986
No 17
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=99.33 E-value=1.3e-12 Score=101.40 Aligned_cols=79 Identities=15% Similarity=0.167 Sum_probs=59.8
Q ss_pred ccccCCchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhhcCCCcchHH
Q 026469 58 EQDRFMPIANVIRIMRKILPQHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEP 137 (238)
Q Consensus 58 e~D~~LPkA~I~RImKeaLp~~~rISkDAkeaLqecaseFI~~LaseAne~A~~~kRKTItaEDVL~ALe~LGF~dyve~ 137 (238)
.....||.+.|.||||.. ++..+||.||..+|.++++.|+.+|+..|+..|++.+||||+++||..|++.-+..+|+..
T Consensus 7 k~~~~fPvaRIkrimK~~-~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~~~e~l~FL~d 85 (98)
T 1jfi_A 7 KYNARFPPARIKKIMQTD-EEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIELEGDPAANKA 85 (98)
T ss_dssp ---CCCCHHHHHHHHTTS-TTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC----------
T ss_pred ccCCCCChHHHHHHHHcC-ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHhcCchhhHHHh
Confidence 345789999999999974 5567999999999999999999999999999999999999999999999998776666553
No 18
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=99.16 E-value=7.7e-11 Score=88.83 Aligned_cols=71 Identities=20% Similarity=0.248 Sum_probs=64.8
Q ss_pred ccCCchhHHHHHHHhhCC---CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhhcC
Q 026469 60 DRFMPIANVIRIMRKILP---QHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLG 130 (238)
Q Consensus 60 D~~LPkA~I~RImKeaLp---~~~rISkDAkeaLqecaseFI~~LaseAne~A~~~kRKTItaEDVL~ALe~LG 130 (238)
++.||++.+.||+|+... .+.|++.+|..+||++++.|+.-|..+|+..|.+.||+||.++||..|..--|
T Consensus 1 ~lli~k~PF~RLVRei~~~~~~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDiqLa~rirg 74 (77)
T 2hue_B 1 MALIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRG 74 (77)
T ss_dssp -CCSCHHHHHHHHHHHHHTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTT
T ss_pred CCccccchHHHHHHHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhHHHHHHHhC
Confidence 478999999999999943 46899999999999999999999999999999999999999999999987554
No 19
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=99.08 E-value=1.9e-10 Score=90.44 Aligned_cols=71 Identities=20% Similarity=0.227 Sum_probs=60.9
Q ss_pred cccccCCchhHHHHHHHhhCCC------CcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHh
Q 026469 57 REQDRFMPIANVIRIMRKILPQ------HAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMS 127 (238)
Q Consensus 57 ~e~D~~LPkA~I~RImKeaLp~------~~rISkDAkeaLqecaseFI~~LaseAne~A~~~kRKTItaEDVL~ALe 127 (238)
+++++.||++.+.||+|+...+ +.|++.+|..+||++++.|+.-|..+|+..|.++||+||.+.||..|..
T Consensus 22 kst~llIpk~PF~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~r 98 (100)
T 2yfv_A 22 RSTDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMRKDMQLARR 98 (100)
T ss_dssp ------CCHHHHHHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred ccchhhhccccHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHH
Confidence 6789999999999999999843 6899999999999999999999999999999999999999999998864
No 20
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=99.03 E-value=4.6e-10 Score=85.52 Aligned_cols=70 Identities=19% Similarity=0.156 Sum_probs=64.1
Q ss_pred cCCchhHHHHHHHhhCC-----CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhhcC
Q 026469 61 RFMPIANVIRIMRKILP-----QHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLG 130 (238)
Q Consensus 61 ~~LPkA~I~RImKeaLp-----~~~rISkDAkeaLqecaseFI~~LaseAne~A~~~kRKTItaEDVL~ALe~LG 130 (238)
+.||++.+.||+|+... .+.|++.+|..+||++++.|+.-|..+|+..|.++||+||.++||..|..--|
T Consensus 2 lLI~klPF~RLVREI~~~~~~~~~~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~rirg 76 (82)
T 3nqj_A 2 LLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRG 76 (82)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSSCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHC
T ss_pred CCcccccHHHHHHHHHHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHHHHcc
Confidence 46899999999999883 25899999999999999999999999999999999999999999999976544
No 21
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=99.01 E-value=4.2e-10 Score=94.69 Aligned_cols=72 Identities=17% Similarity=0.160 Sum_probs=64.8
Q ss_pred cccccCCchhHHHHHHHhhCCC-----CcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhh
Q 026469 57 REQDRFMPIANVIRIMRKILPQ-----HAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSK 128 (238)
Q Consensus 57 ~e~D~~LPkA~I~RImKeaLp~-----~~rISkDAkeaLqecaseFI~~LaseAne~A~~~kRKTItaEDVL~ALe~ 128 (238)
+.+++.||++.+.||||++..+ +.|++.+|.++||++++.|+.-|..+|+..|.++||+||.++||..|+.-
T Consensus 72 kSteLLIpKlPF~RLVREIa~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEdanLcAiHAkRVTIm~kDIqLArrI 148 (156)
T 3r45_A 72 KSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRI 148 (156)
T ss_dssp ---CCCSCHHHHHHHHHHHHHTTTTTCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHHH
T ss_pred cccccccccccHHHHHHHHHHHhccCccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHH
Confidence 6789999999999999999842 57999999999999999999999999999999999999999999998754
No 22
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=99.00 E-value=4.7e-10 Score=92.97 Aligned_cols=75 Identities=17% Similarity=0.169 Sum_probs=66.4
Q ss_pred cccccCCchhHHHHHHHhhCC-----CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhhcCC
Q 026469 57 REQDRFMPIANVIRIMRKILP-----QHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGF 131 (238)
Q Consensus 57 ~e~D~~LPkA~I~RImKeaLp-----~~~rISkDAkeaLqecaseFI~~LaseAne~A~~~kRKTItaEDVL~ALe~LGF 131 (238)
+.+++.||++.+.||+|+... .+.+++.+|.++||++++.|+.-|..+|+..|.++||+||.++||..|+.--|.
T Consensus 56 kst~LLIpKlPF~RLVREI~~~~~~~~~~Rfq~~Al~ALQEAaEayLv~LFEdanlcAiHAkRVTIm~kDiqLArrirg~ 135 (140)
T 3nqu_A 56 KSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRGL 135 (140)
T ss_dssp ---CCCSCTTHHHHHHHHHHHHHHTTCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC-
T ss_pred cccccccccccHHHHHHHHHHHhcccccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHhccc
Confidence 679999999999999999873 258999999999999999999999999999999999999999999999876554
No 23
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=98.99 E-value=7.3e-10 Score=91.35 Aligned_cols=74 Identities=19% Similarity=0.256 Sum_probs=68.4
Q ss_pred cccccCCchhHHHHHHHhhCC---CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhhcC
Q 026469 57 REQDRFMPIANVIRIMRKILP---QHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLG 130 (238)
Q Consensus 57 ~e~D~~LPkA~I~RImKeaLp---~~~rISkDAkeaLqecaseFI~~LaseAne~A~~~kRKTItaEDVL~ALe~LG 130 (238)
+.+++.||++.+.||+|+... .+.|++.+|.++||++++.|+..|..+|+..|.+.||+||.++||..|..--|
T Consensus 57 kst~lLIpk~PF~RLVREI~~~~~~~~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~rirg 133 (136)
T 1tzy_C 57 KSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133 (136)
T ss_dssp HCCSCCSCHHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHT
T ss_pred cchhhhhccchHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHhHHHHHHHhC
Confidence 678999999999999999943 46899999999999999999999999999999999999999999999986544
No 24
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=98.92 E-value=3.7e-09 Score=78.32 Aligned_cols=65 Identities=20% Similarity=0.239 Sum_probs=62.0
Q ss_pred cCCchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHh
Q 026469 61 RFMPIANVIRIMRKILPQHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMS 127 (238)
Q Consensus 61 ~~LPkA~I~RImKeaLp~~~rISkDAkeaLqecaseFI~~LaseAne~A~~~kRKTItaEDVL~ALe 127 (238)
-.||.++|.+|++...- .++|+|+...|.+-++..+..|+.+|.+.+.+.|||||+.+||-.||+
T Consensus 5 s~lp~~~v~~iaes~Gi--~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk 69 (70)
T 1taf_B 5 SSISAESMKVIAESIGV--GSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLK 69 (70)
T ss_dssp CCCCHHHHHHHHHHTTC--CCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC
T ss_pred ccCCHHHHHHHHHHCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHc
Confidence 36999999999999976 699999999999999999999999999999999999999999999985
No 25
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=98.82 E-value=9.7e-09 Score=82.45 Aligned_cols=77 Identities=17% Similarity=0.153 Sum_probs=67.5
Q ss_pred HHHHHHHhhCCC-CcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhhcCCCcchHHHHHHHHHH
Q 026469 67 NVIRIMRKILPQ-HAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTVYLHRY 145 (238)
Q Consensus 67 ~I~RImKeaLp~-~~rISkDAkeaLqecaseFI~~LaseAne~A~~~kRKTItaEDVL~ALe~LGF~dyve~Lk~~L~~y 145 (238)
.|.||+++...+ ++.||++++.+|.+.+..|+..|+.++...|+++|||||+++||..++++. +.|..+|..|
T Consensus 32 ~V~rIvke~gaer~~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~Rr~------~~L~~~l~~~ 105 (113)
T 4dra_A 32 TVGCLCEEVALDKEMQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARRS------NSLLKYITDK 105 (113)
T ss_dssp HHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTC------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHhC------HHHHHHHHHH
Confidence 578999998764 577999999999999999999999999999999999999999999999874 5666777777
Q ss_pred HHHH
Q 026469 146 REME 149 (238)
Q Consensus 146 RE~~ 149 (238)
.+..
T Consensus 106 ~~el 109 (113)
T 4dra_A 106 SEEI 109 (113)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6643
No 26
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=98.79 E-value=1.3e-08 Score=84.33 Aligned_cols=77 Identities=16% Similarity=0.155 Sum_probs=65.7
Q ss_pred HHHHHHHhhCCC-CcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhhcCCCcchHHHHHHHHHH
Q 026469 67 NVIRIMRKILPQ-HAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTVYLHRY 145 (238)
Q Consensus 67 ~I~RImKeaLp~-~~rISkDAkeaLqecaseFI~~LaseAne~A~~~kRKTItaEDVL~ALe~LGF~dyve~Lk~~L~~y 145 (238)
.|.||+++...+ ++.||+|+..+|.+.+..|+..|+.++..+|+|+|||||+++||..++++. +.|..+|..|
T Consensus 24 ~VgkIvee~~~~~~~~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~Rrn------~~L~~~L~~~ 97 (140)
T 3vh5_A 24 TTGALAQDVAEDKGVLFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKLLARRS------NSLLKYITQK 97 (140)
T ss_dssp HHHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTS------HHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhC------HHHHHHHHHH
Confidence 578888887553 688999999999999999999999999999999999999999999999874 4555566655
Q ss_pred HHHH
Q 026469 146 REME 149 (238)
Q Consensus 146 RE~~ 149 (238)
.+..
T Consensus 98 ~~el 101 (140)
T 3vh5_A 98 SDEL 101 (140)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 27
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=98.75 E-value=2.4e-08 Score=79.33 Aligned_cols=76 Identities=16% Similarity=0.163 Sum_probs=65.2
Q ss_pred HHHHHHHhhCC-CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhhcCCCcchHHHHHHHHHH
Q 026469 67 NVIRIMRKILP-QHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTVYLHRY 145 (238)
Q Consensus 67 ~I~RImKeaLp-~~~rISkDAkeaLqecaseFI~~LaseAne~A~~~kRKTItaEDVL~ALe~LGF~dyve~Lk~~L~~y 145 (238)
.|.||+++... .+.++|+++..+|.+.+..|+.-|+.+|..+|+++|||||+.+||..|+++. +.|...|..|
T Consensus 24 ~V~rI~~~~g~~~~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rrn------~~l~~~l~~~ 97 (107)
T 3b0b_B 24 TTGCLCQDVAEDKGVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLARRS------NSLLKYITQK 97 (107)
T ss_dssp HHHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTC------HHHHHHHHHH
T ss_pred HHHHHHHHHhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHHhC------HHHHHHHHHH
Confidence 48899998864 2579999999999999999999999999999999999999999999999884 4455556555
Q ss_pred HHH
Q 026469 146 REM 148 (238)
Q Consensus 146 RE~ 148 (238)
.+.
T Consensus 98 ~~e 100 (107)
T 3b0b_B 98 SDE 100 (107)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 28
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=98.72 E-value=3e-08 Score=76.60 Aligned_cols=63 Identities=11% Similarity=0.158 Sum_probs=58.9
Q ss_pred HHHHHHHhhCCCC-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhhc
Q 026469 67 NVIRIMRKILPQH-AKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKL 129 (238)
Q Consensus 67 ~I~RImKeaLp~~-~rISkDAkeaLqecaseFI~~LaseAne~A~~~kRKTItaEDVL~ALe~L 129 (238)
.|.||+.+.++.. +.||+++..+|.+.+..++..|+.++...|+|+|||||+++||..++++.
T Consensus 17 ~V~ki~~e~~~~~g~~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~Rrn 80 (90)
T 3v9r_A 17 RVEERLQQVLSSEDIKYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLRKQ 80 (90)
T ss_dssp HHHHHHHHHSCSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTC
T ss_pred HHHHHHHHHHHhcCceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhC
Confidence 5789999998765 89999999999999999999999999999999999999999999998863
No 29
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=98.65 E-value=8e-08 Score=70.75 Aligned_cols=61 Identities=18% Similarity=0.272 Sum_probs=57.4
Q ss_pred hHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhh
Q 026469 66 ANVIRIMRKILPQHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSK 128 (238)
Q Consensus 66 A~I~RImKeaLp~~~rISkDAkeaLqecaseFI~~LaseAne~A~~~kRKTItaEDVL~ALe~ 128 (238)
..|.||+|+... .+++.++...|.+.+..++.-|+.+|..+|+++|||||++|||..|++.
T Consensus 5 ~~i~~iLk~~G~--~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~ 65 (68)
T 1taf_A 5 QVIMSILKELNV--QEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEV 65 (68)
T ss_dssp HHHHHHHHHTTC--CCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHCCC--cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHh
Confidence 368999999876 6999999999999999999999999999999999999999999999874
No 30
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=98.61 E-value=4.3e-08 Score=79.41 Aligned_cols=55 Identities=22% Similarity=0.387 Sum_probs=47.4
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhhcCCCcc
Q 026469 80 AKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDY 134 (238)
Q Consensus 80 ~rISkDAkeaLqecaseFI~~LaseAne~A~~~kRKTItaEDVL~ALe~LGF~dy 134 (238)
.|||.|+.+.+.+..++|+.-|..+|..+|++++||||+++||..||++.|-.-|
T Consensus 63 kRIS~~iy~e~r~vl~~~l~~i~rdav~yaehA~RKTVta~DV~~Alkr~G~~ly 117 (121)
T 2ly8_A 63 KRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGRTLY 117 (121)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHHHTTCGGG
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhCCCcCC
Confidence 4677777777777888888888999999999999999999999999999886443
No 31
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=98.48 E-value=4e-07 Score=73.50 Aligned_cols=69 Identities=12% Similarity=0.173 Sum_probs=63.4
Q ss_pred cccCCchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhh
Q 026469 59 QDRFMPIANVIRIMRKILPQHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSK 128 (238)
Q Consensus 59 ~D~~LPkA~I~RImKeaLp~~~rISkDAkeaLqecaseFI~~LaseAne~A~~~kRKTItaEDVL~ALe~ 128 (238)
..+.||.+.|.|+||+.-. ..||+.+|...|..+.+.|+..|...|...|.+.+|++|+++||..|+..
T Consensus 20 agL~fPV~ri~R~Lk~~~~-a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~n 88 (123)
T 2nqb_C 20 AGLQFPVGRIHRLLRKGNY-AERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 88 (123)
T ss_dssp HTCSSCHHHHHHHHHHTTS-CSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred CCeeccHHHHHHHHHcccc-ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHhc
Confidence 5678999999999999733 25999999999999999999999999999999999999999999999873
No 32
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=98.46 E-value=8.4e-08 Score=85.23 Aligned_cols=61 Identities=20% Similarity=0.235 Sum_probs=56.4
Q ss_pred HHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhhcC
Q 026469 68 VIRIMRKILPQHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLG 130 (238)
Q Consensus 68 I~RImKeaLp~~~rISkDAkeaLqecaseFI~~LaseAne~A~~~kRKTItaEDVL~ALe~LG 130 (238)
|.||+|+... .|||.++.+.+.+..++|+.-|..+|..+|++++||||+++||..||+.+|
T Consensus 167 ~~RlaRrgGV--kRIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKTVta~DV~~ALKr~g 227 (235)
T 2l5a_A 167 DEEDGDKGGV--KRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQG 227 (235)
T ss_dssp CCTTSCCTTC--CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHH
T ss_pred HHHHhhcCCc--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhcC
Confidence 3477777765 799999999999999999999999999999999999999999999999775
No 33
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=98.45 E-value=4.3e-07 Score=73.84 Aligned_cols=71 Identities=13% Similarity=0.146 Sum_probs=65.1
Q ss_pred ccccCCchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhh
Q 026469 58 EQDRFMPIANVIRIMRKILPQHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSK 128 (238)
Q Consensus 58 e~D~~LPkA~I~RImKeaLp~~~rISkDAkeaLqecaseFI~~LaseAne~A~~~kRKTItaEDVL~ALe~ 128 (238)
-..+.||.+.|.|+||+......||+.+|...|..+.+.|+..|...|...|.+.+|++|+++||..|+..
T Consensus 23 ragLqfPV~ri~R~Lk~~~~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItprhi~lAI~n 93 (128)
T 1f66_C 23 RAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRG 93 (128)
T ss_dssp HHTCSSCHHHHHHHHHHTSCSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHH
T ss_pred cCCccCChHHHHHHHHHcccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhc
Confidence 35678999999999999875346999999999999999999999999999999999999999999999864
No 34
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=98.44 E-value=5.4e-07 Score=73.35 Aligned_cols=69 Identities=14% Similarity=0.181 Sum_probs=63.5
Q ss_pred cccCCchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhh
Q 026469 59 QDRFMPIANVIRIMRKILPQHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSK 128 (238)
Q Consensus 59 ~D~~LPkA~I~RImKeaLp~~~rISkDAkeaLqecaseFI~~LaseAne~A~~~kRKTItaEDVL~ALe~ 128 (238)
..+.||.+.|.|+||+.-. ..||+.+|...|..+.+.|+..|...|...|.+.+|++|+++||..|+..
T Consensus 22 agLqfPV~rI~R~Lk~~~~-a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~n 90 (129)
T 1tzy_A 22 AGLQFPVGRVHRLLRKGNY-AERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRN 90 (129)
T ss_dssp HTCSSCHHHHHHHHHHTTS-SSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred CceeccHHHHHHHHHcccc-ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhc
Confidence 5788999999999999733 25999999999999999999999999999999999999999999999873
No 35
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=98.43 E-value=6.2e-07 Score=72.11 Aligned_cols=69 Identities=16% Similarity=0.258 Sum_probs=63.8
Q ss_pred cccCCchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhh
Q 026469 59 QDRFMPIANVIRIMRKILPQHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSK 128 (238)
Q Consensus 59 ~D~~LPkA~I~RImKeaLp~~~rISkDAkeaLqecaseFI~~LaseAne~A~~~kRKTItaEDVL~ALe~ 128 (238)
..+.||.+.|.|+||+.-. ..||+.+|...|..+.+.|+..|...|...|.+.+|++|+++||..|+..
T Consensus 19 agLqfPV~ri~R~Lk~~~~-a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp~hi~lAI~n 87 (120)
T 2f8n_G 19 AGVIFPVGRMLRYIKKGHP-KYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVAN 87 (120)
T ss_dssp HTCSSCHHHHHHHHHHHSS-SCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred cCccCChHHHHHHHHcCcc-ccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhc
Confidence 5678999999999999853 35999999999999999999999999999999999999999999999873
No 36
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=98.42 E-value=4.9e-07 Score=73.75 Aligned_cols=70 Identities=14% Similarity=0.191 Sum_probs=63.8
Q ss_pred ccccCCchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhh
Q 026469 58 EQDRFMPIANVIRIMRKILPQHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSK 128 (238)
Q Consensus 58 e~D~~LPkA~I~RImKeaLp~~~rISkDAkeaLqecaseFI~~LaseAne~A~~~kRKTItaEDVL~ALe~ 128 (238)
-..+.||.+.|.|+||+.-. ..||+.+|...|..+.+.|+..|...|...|.+.+|++|+++||..|+..
T Consensus 21 ragLqfPV~rI~R~Lk~~~~-a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~lAI~n 90 (131)
T 1id3_C 21 KAGLTFPVGRVHRLLRRGNY-AQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRN 90 (131)
T ss_dssp GGTCSSCHHHHHHHHHTTCS-CSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred cCCeecCHHHHHHHHHcccc-ccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhc
Confidence 35678999999999999733 25999999999999999999999999999999999999999999999873
No 37
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=98.37 E-value=8.5e-07 Score=73.99 Aligned_cols=70 Identities=14% Similarity=0.183 Sum_probs=63.9
Q ss_pred ccccCCchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhh
Q 026469 58 EQDRFMPIANVIRIMRKILPQHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSK 128 (238)
Q Consensus 58 e~D~~LPkA~I~RImKeaLp~~~rISkDAkeaLqecaseFI~~LaseAne~A~~~kRKTItaEDVL~ALe~ 128 (238)
-..+.||.+.|.|+||+.-. ..||+.+|...|..+.+.|+..|...|...|.+.+|++|+++||..|++.
T Consensus 40 ragLqFPVgrI~R~LK~~~~-a~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krkrItprhI~lAI~n 109 (149)
T 2f8n_K 40 RAGLQFPVGRVHRLLRKGNY-SERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRN 109 (149)
T ss_dssp HHTCSSCHHHHHHHHHHTTS-CSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred cCCeeccHHHHHHHHHcccc-ccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHhc
Confidence 35778999999999999733 25999999999999999999999999999999999999999999999873
No 38
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=98.22 E-value=2.6e-06 Score=72.73 Aligned_cols=70 Identities=11% Similarity=0.169 Sum_probs=64.1
Q ss_pred cccCCchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhh
Q 026469 59 QDRFMPIANVIRIMRKILPQHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSK 128 (238)
Q Consensus 59 ~D~~LPkA~I~RImKeaLp~~~rISkDAkeaLqecaseFI~~LaseAne~A~~~kRKTItaEDVL~ALe~ 128 (238)
..+.||.+.|.|+||+.-....||+.+|...|..+.+.++..|...|...|.+.+|++|+++||..|+..
T Consensus 102 agl~fPv~ri~R~lk~~~~a~~Rv~~~A~vyLaavLEyl~~eIlelA~n~a~~~~~~~I~p~~i~lAi~n 171 (192)
T 2jss_A 102 AGLQFPVGRIKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRG 171 (192)
T ss_dssp SSCCSCHHHHHHHHHHTTCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHT
T ss_pred CCCcCCHHHHHHHHHhcCccccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHhc
Confidence 4689999999999999743246999999999999999999999999999999999999999999999873
No 39
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=98.18 E-value=3.9e-06 Score=68.29 Aligned_cols=63 Identities=22% Similarity=0.360 Sum_probs=59.1
Q ss_pred hHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhhc
Q 026469 66 ANVIRIMRKILPQHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKL 129 (238)
Q Consensus 66 A~I~RImKeaLp~~~rISkDAkeaLqecaseFI~~LaseAne~A~~~kRKTItaEDVL~ALe~L 129 (238)
.-|+|++|++-| +..||.+|...|...+..+..-|+.||...|...+|+||+.+||..|++-|
T Consensus 37 ~YIyKVLKQVhp-d~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLl 99 (123)
T 2nqb_D 37 IYIYTVLKQVHP-DTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLL 99 (123)
T ss_dssp HHHHHHHHHHCT-TCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHh
Confidence 568999999987 688999999999999999999999999999999999999999999998754
No 40
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=98.13 E-value=5.2e-06 Score=67.79 Aligned_cols=63 Identities=25% Similarity=0.403 Sum_probs=59.0
Q ss_pred hHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhhc
Q 026469 66 ANVIRIMRKILPQHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKL 129 (238)
Q Consensus 66 A~I~RImKeaLp~~~rISkDAkeaLqecaseFI~~LaseAne~A~~~kRKTItaEDVL~ALe~L 129 (238)
--|+|++|++-| +..||.+|...|...+..+..-|+.||...|...+|+||+.+||..|+.-|
T Consensus 40 ~YIyKVLKQVhp-d~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLl 102 (126)
T 1tzy_B 40 IYVYKVLKQVHP-DTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLL 102 (126)
T ss_dssp HHHHHHHHHHCT-TCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 369999999987 688999999999999999999999999999999999999999999998754
No 41
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=98.10 E-value=4.6e-06 Score=74.15 Aligned_cols=71 Identities=17% Similarity=0.199 Sum_probs=64.2
Q ss_pred ccCCchhHHHHHHHhhCCC------CcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhhcC
Q 026469 60 DRFMPIANVIRIMRKILPQ------HAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLG 130 (238)
Q Consensus 60 D~~LPkA~I~RImKeaLp~------~~rISkDAkeaLqecaseFI~~LaseAne~A~~~kRKTItaEDVL~ALe~LG 130 (238)
.+.||+....||+|+...+ +.|++.+|..+||++++.|+.-|...++-+|.++||.||.+.||..|..--|
T Consensus 9 ~~lI~KlPFqRLVREIaq~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEd~nLcaiHAkRVTim~kDiqLarrirg 85 (235)
T 2l5a_A 9 KLLISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMKKDMQLARRIRG 85 (235)
T ss_dssp --CCSCCHHHHHHHHHHHTSCGGGTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGTTHHHHHHTSSC
T ss_pred cccccCccHHHHHHHHHHHhccCCccceecHHHHHHHHHHHHHHHHHHHhhhHHHHhcccccccchhhHHHHHHHhh
Confidence 4689999999999998653 5799999999999999999999999999999999999999999999987655
No 42
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=97.85 E-value=3.7e-05 Score=65.62 Aligned_cols=63 Identities=17% Similarity=0.335 Sum_probs=58.9
Q ss_pred hHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhhc
Q 026469 66 ANVIRIMRKILPQHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKL 129 (238)
Q Consensus 66 A~I~RImKeaLp~~~rISkDAkeaLqecaseFI~~LaseAne~A~~~kRKTItaEDVL~ALe~L 129 (238)
.-|+|++|++-| +..||+||...|...+..+..-|+.+|...+...+|+||+.+||..|++.+
T Consensus 7 ~yi~kvLkqv~p-~~~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avrl~ 69 (192)
T 2jss_A 7 SYIYKVLKQTHP-DTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRLI 69 (192)
T ss_dssp HHHHHHHHHHCS-SCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHH
T ss_pred HHHHHHHcccCC-CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHh
Confidence 468999999987 688999999999999999999999999999999999999999999999743
No 43
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=97.82 E-value=8.8e-05 Score=56.67 Aligned_cols=70 Identities=13% Similarity=0.148 Sum_probs=62.2
Q ss_pred cccCCchhHHHHHHHhhCC-CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhh
Q 026469 59 QDRFMPIANVIRIMRKILP-QHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSK 128 (238)
Q Consensus 59 ~D~~LPkA~I~RImKeaLp-~~~rISkDAkeaLqecaseFI~~LaseAne~A~~~kRKTItaEDVL~ALe~ 128 (238)
.+..+|...|.||++.... +..||++||..++++....||..-...|.+.++.++..+|..+|+-+.+-.
T Consensus 9 ~~~~i~~~li~ril~~~F~~~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~e~LEki~pQ 79 (84)
T 4dra_E 9 AGSGFRKELVSRLLHLHFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQAEDALRVDVDQLEKVLPQ 79 (84)
T ss_dssp --CCCCHHHHHHHHHTTCSSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 4568999999999998887 578999999999999999999999999999999889999999999887654
No 44
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=97.75 E-value=0.00012 Score=54.84 Aligned_cols=66 Identities=14% Similarity=0.359 Sum_probs=62.3
Q ss_pred CCchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhh
Q 026469 62 FMPIANVIRIMRKILPQHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSK 128 (238)
Q Consensus 62 ~LPkA~I~RImKeaLp~~~rISkDAkeaLqecaseFI~~LaseAne~A~~~kRKTItaEDVL~ALe~ 128 (238)
-|++..+..|+|+.-| +..+..|+.++|.+.|.+||.-+++.|...|++-+-.||...||...|++
T Consensus 5 vl~k~~L~~Lv~~idp-~~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Ler 70 (76)
T 1h3o_B 5 VLTKKKLQDLVREVDP-NEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLER 70 (76)
T ss_dssp SSCHHHHHHHHHHHCS-SCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHH
T ss_pred cccHHHHHHHHHhcCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHh
Confidence 4789999999999866 88999999999999999999999999999999999999999999998875
No 45
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=97.69 E-value=0.00016 Score=54.69 Aligned_cols=70 Identities=16% Similarity=0.217 Sum_probs=61.9
Q ss_pred cccCCchhHHHHHHHhhCC-CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhh
Q 026469 59 QDRFMPIANVIRIMRKILP-QHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSK 128 (238)
Q Consensus 59 ~D~~LPkA~I~RImKeaLp-~~~rISkDAkeaLqecaseFI~~LaseAne~A~~~kRKTItaEDVL~ALe~ 128 (238)
.+-.+|...|.||++.... +..||++||..++.+....||..-..-|...++.++-..|..+|+-+.+-.
T Consensus 5 ~~~~~~~~lI~ril~~~f~~~ktrI~~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~~~LEki~pq 75 (81)
T 3b0b_C 5 REGGFRKETVERLLRLHFRDGRTRVNGDALLLMAELLKVFVREAAARAARQAQAEDLEKVDIEHVEKVLPQ 75 (81)
T ss_dssp --CCCCHHHHHHHHHHHCCSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeecHHHHHHHHHH
Confidence 4668999999999999987 468999999999999999999999999999998889999999999886643
No 46
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=97.45 E-value=0.00049 Score=52.77 Aligned_cols=67 Identities=15% Similarity=0.272 Sum_probs=60.4
Q ss_pred CCchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CccCcccHHHHHhhcC
Q 026469 62 FMPIANVIRIMRKILPQHAKISDDAKETIQECVSEYISFITGEANERCQREQR-KTITAEDVLWAMSKLG 130 (238)
Q Consensus 62 ~LPkA~I~RImKeaLp~~~rISkDAkeaLqecaseFI~~LaseAne~A~~~kR-KTItaEDVL~ALe~LG 130 (238)
.||++.|+|||...+. ..|+++...+|.=.+.+||-.|..+|.+++++.+. .-|.++||-.|..+|.
T Consensus 16 ~f~k~~vKrl~~~~~~--~~v~~~v~i~v~glaKvfVgelVE~A~~V~~~~~~~~Pl~P~HireA~rrl~ 83 (89)
T 1bh9_B 16 AFPKAAIKRLIQSITG--TSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVRRLK 83 (89)
T ss_dssp CCCHHHHHHHHHHHHS--SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHcC--CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHH
Confidence 6999999999999985 78999999999999999999999999999987754 4799999999987664
No 47
>3v9r_B MHF2, uncharacterized protein YDL160C-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=96.01 E-value=0.011 Score=45.66 Aligned_cols=48 Identities=17% Similarity=0.220 Sum_probs=38.9
Q ss_pred CCchhHHHHHHHhhCC-CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026469 62 FMPIANVIRIMRKILP-QHAKISDDAKETIQECVSEYISFITGEANERC 109 (238)
Q Consensus 62 ~LPkA~I~RImKeaLp-~~~rISkDAkeaLqecaseFI~~LaseAne~A 109 (238)
.||+..|.||++.... ++.||++||..++++....||..-...|.+..
T Consensus 1 ~ip~~llaRIL~~~F~~~kTrIt~da~~lv~kY~diFVrEAv~Rs~e~k 49 (88)
T 3v9r_B 1 MLSKEALIKILSQNEGGNDMKIADEVVPMIQKYLDIFIDEAVLRSLQSH 49 (88)
T ss_dssp CCCSHHHHHHHTTTSCSSCCEECTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCCceecHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3899999999997766 36899999999999999999976555554433
No 48
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=95.98 E-value=0.0076 Score=48.70 Aligned_cols=53 Identities=11% Similarity=0.123 Sum_probs=45.7
Q ss_pred CCchhHHHHHHHhhCC---C---CcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 026469 62 FMPIANVIRIMRKILP---Q---HAKISDDAKETIQECVSEYISFITGEANERCQREQR 114 (238)
Q Consensus 62 ~LPkA~I~RImKeaLp---~---~~rISkDAkeaLqecaseFI~~LaseAne~A~~~kR 114 (238)
.+|+....||+|+... . +.|++.+|..+||++++.|+.-|...+|-.|.++-|
T Consensus 1 LI~klPF~RLVREI~~~~~~~~~~lRfq~~Al~ALQeAsEayLV~lFEd~nlcaiHA~~ 59 (121)
T 2ly8_A 1 LISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHLVP 59 (121)
T ss_dssp CCSCCHHHHHHHHHHHHHTTCCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCCccchHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhHHHHcCCc
Confidence 4788889999887542 2 689999999999999999999999999999988733
No 49
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=90.85 E-value=0.4 Score=41.37 Aligned_cols=66 Identities=15% Similarity=0.231 Sum_probs=51.5
Q ss_pred CchhHHHHHHHhhCC-CCcccCHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCCCccCcccHHHHHhh
Q 026469 63 MPIANVIRIMRKILP-QHAKISDDAKETIQECVS----EYISFITGEANERCQREQRKTITAEDVLWAMSK 128 (238)
Q Consensus 63 LPkA~I~RImKeaLp-~~~rISkDAkeaLqecas----eFI~~LaseAne~A~~~kRKTItaEDVL~ALe~ 128 (238)
++...+..|++..+. ....+++++.+.|.+.+. ..+.-+...|...|...++++|+.+||..|++.
T Consensus 259 ~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~ 329 (368)
T 3uk6_A 259 YSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSL 329 (368)
T ss_dssp CCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 456677777775544 246799999999988776 355566677888888899999999999999975
No 50
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=86.51 E-value=1.7 Score=44.72 Aligned_cols=67 Identities=16% Similarity=0.193 Sum_probs=53.7
Q ss_pred cccCCchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHh
Q 026469 59 QDRFMPIANVIRIMRKILPQHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMS 127 (238)
Q Consensus 59 ~D~~LPkA~I~RImKeaLp~~~rISkDAkeaLqecaseFI~~LaseAne~A~~~kRKTItaEDVL~ALe 127 (238)
..+.+|...|.|++|.... -||+..|..-+.-..+-....|..-|...|+..+++.|+++||..|+.
T Consensus 101 ~~l~~pv~~~~~~l~~~~~--~r~~~~~~~y~~avleyl~~~~l~la~~~~~~~~~~~i~p~~~~~ai~ 167 (1049)
T 3ksy_A 101 NPLSLPVEKIHPLLKEVLG--YKIDHQVSVYIVAVLEYISADILKLVGNYVRNIRHYEITKQDIKVAMC 167 (1049)
T ss_dssp SSCSSCHHHHHHHHHHHHC--SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCHHHHHHHHH
T ss_pred CCccccHHHHHHHhhcccc--cccCCCCcchhHHHHHHHHHHHHHHHHHHHHHcCCceecCcccccccc
Confidence 4578999999999977665 599999988887665555555555666777888999999999998885
No 51
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=84.66 E-value=4.1 Score=34.78 Aligned_cols=77 Identities=19% Similarity=0.143 Sum_probs=57.2
Q ss_pred CchhHHHHHHHhhCCC---CcccCHHHHHHHHHHH------------HHHHHHHHHHHHHHHHhcCCCccCcccHHHHHh
Q 026469 63 MPIANVIRIMRKILPQ---HAKISDDAKETIQECV------------SEYISFITGEANERCQREQRKTITAEDVLWAMS 127 (238)
Q Consensus 63 LPkA~I~RImKeaLp~---~~rISkDAkeaLqeca------------seFI~~LaseAne~A~~~kRKTItaEDVL~ALe 127 (238)
|....+..+++..+.. ...++.++.+.|.+.+ --++..+...|...|..+++.+|+.+||..|++
T Consensus 193 l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~ 272 (389)
T 1fnn_A 193 YTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSK 272 (389)
T ss_dssp CBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Confidence 4446677777665542 2478999999988887 244566667888888888999999999999999
Q ss_pred hcCCCcchHHHH
Q 026469 128 KLGFDDYIEPLT 139 (238)
Q Consensus 128 ~LGF~dyve~Lk 139 (238)
......+.+.++
T Consensus 273 ~~~~~~~~~~l~ 284 (389)
T 1fnn_A 273 EVLFGISEEVLI 284 (389)
T ss_dssp HHSCCCCHHHHH
T ss_pred HHhhhhHHHHHH
Confidence 887665554443
No 52
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=83.30 E-value=1.4 Score=37.52 Aligned_cols=69 Identities=13% Similarity=0.100 Sum_probs=53.5
Q ss_pred chhHHHHHHHhhCC---CCcccCHHHHHHHHHHHH------HHHHHHHHHHHHHHHhcCCCccCcccHHHHHhhcCCC
Q 026469 64 PIANVIRIMRKILP---QHAKISDDAKETIQECVS------EYISFITGEANERCQREQRKTITAEDVLWAMSKLGFD 132 (238)
Q Consensus 64 PkA~I~RImKeaLp---~~~rISkDAkeaLqecas------eFI~~LaseAne~A~~~kRKTItaEDVL~ALe~LGF~ 132 (238)
....+..|++..+. ....++.++.+.+.+.+. ..+.-+...|...|..+++.+|+.+||..|++++..+
T Consensus 202 ~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~~~ 279 (387)
T 2v1u_A 202 TAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEIERD 279 (387)
T ss_dssp CHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhhc
Confidence 36677777766543 246799999999988876 4566677788888988899999999999999887433
No 53
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=82.19 E-value=1.9 Score=39.52 Aligned_cols=66 Identities=17% Similarity=0.123 Sum_probs=50.3
Q ss_pred CchhHHHHHHHhhCC-CCcccCHHHHHHHHHHH-H---HHHHHHHHHHHHHHHhcCCCccCcccHHHHHhh
Q 026469 63 MPIANVIRIMRKILP-QHAKISDDAKETIQECV-S---EYISFITGEANERCQREQRKTITAEDVLWAMSK 128 (238)
Q Consensus 63 LPkA~I~RImKeaLp-~~~rISkDAkeaLqeca-s---eFI~~LaseAne~A~~~kRKTItaEDVL~ALe~ 128 (238)
+....+..+++..+. .+..+++++...|.+.+ . .....|...|..+|..+++.+|+.+||..|+.-
T Consensus 366 ~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~~ 436 (456)
T 2c9o_A 366 YTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEISEL 436 (456)
T ss_dssp CCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHSCHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHH
Confidence 455667777765543 23579999999888876 2 345666778888999999999999999999865
No 54
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=77.33 E-value=3.8 Score=34.65 Aligned_cols=74 Identities=12% Similarity=0.090 Sum_probs=53.9
Q ss_pred CchhHHHHHHHhhCC---CCcccCHHHHHHHHHHHH------HHHHHHHHHHHHHHHhcCCCccCcccHHHHHhhcCCCc
Q 026469 63 MPIANVIRIMRKILP---QHAKISDDAKETIQECVS------EYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDD 133 (238)
Q Consensus 63 LPkA~I~RImKeaLp---~~~rISkDAkeaLqecas------eFI~~LaseAne~A~~~kRKTItaEDVL~ALe~LGF~d 133 (238)
|....+..|++..+. ....++.++.+.+.+.+. ..+.-+...|...|..+++.+|+.+||..|++++..+.
T Consensus 197 l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~~~~ 276 (386)
T 2qby_A 197 YNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIERDR 276 (386)
T ss_dssp CCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHhhch
Confidence 455667777776432 135789999998888775 23445777888888888999999999999998875443
Q ss_pred chH
Q 026469 134 YIE 136 (238)
Q Consensus 134 yve 136 (238)
+..
T Consensus 277 ~~~ 279 (386)
T 2qby_A 277 VRD 279 (386)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 55
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=74.47 E-value=2.5 Score=29.64 Aligned_cols=32 Identities=31% Similarity=0.351 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHhcCCCccCcccHHHHHhhc
Q 026469 98 ISFITGEANERCQREQRKTITAEDVLWAMSKL 129 (238)
Q Consensus 98 I~~LaseAne~A~~~kRKTItaEDVL~ALe~L 129 (238)
|.-|..+|...|..+++..|+.+|+..||++.
T Consensus 42 i~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v 73 (78)
T 3kw6_A 42 VKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 73 (78)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 66677788888989999999999999999753
No 56
>1wwi_A Hypothetical protein TTHA1479; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 1.58A {Thermus thermophilus HB8} SCOP: a.22.1.4 PDB: 1wws_A
Probab=70.33 E-value=10 Score=31.59 Aligned_cols=75 Identities=16% Similarity=0.266 Sum_probs=61.7
Q ss_pred CCchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhhcCCCcchHHHHHH
Q 026469 62 FMPIANVIRIMRKILPQHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTVY 141 (238)
Q Consensus 62 ~LPkA~I~RImKeaLp~~~rISkDAkeaLqecaseFI~~LaseAne~A~~~kRKTItaEDVL~ALe~LGF~dyve~Lk~~ 141 (238)
-++.+-+.|+.+.+.. .-|-|+-.+-+.+.++.=+.-|.--|.+.|+.++|.+|...|+= .-..+++.
T Consensus 2 vm~~~~~e~lFR~aa~--LdvdK~d~~r~~d~V~~Kl~DLl~va~~~Ak~n~RdvI~~~DLP----------ITkGlqes 69 (148)
T 1wwi_A 2 LMKVAEFERLFRQAAG--LDVDKNDLKRVSDFLRNKLYDLLAVAERNAKYNGRDLIFEPDLP----------IAKGLQET 69 (148)
T ss_dssp CSCHHHHHHHHHHHHC--CCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECGGGSC----------CCHHHHHH
T ss_pred cCCHHHHHHHHHHHhc--cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccCC----------ccHHHHHH
Confidence 3678889999999987 77888888889999999999999999999999999999998862 23455566
Q ss_pred HHHHHHH
Q 026469 142 LHRYREM 148 (238)
Q Consensus 142 L~~yRE~ 148 (238)
++.||+.
T Consensus 70 i~~F~~l 76 (148)
T 1wwi_A 70 LQEFRRM 76 (148)
T ss_dssp HHHHHTT
T ss_pred HHHHHHc
Confidence 6666655
No 57
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=69.05 E-value=19 Score=34.22 Aligned_cols=49 Identities=20% Similarity=0.232 Sum_probs=39.9
Q ss_pred cccCHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHhcCCCccCcccHHHHHhh
Q 026469 80 AKISDDAKETIQECVS-------------EYISFITGEANERCQREQRKTITAEDVLWAMSK 128 (238)
Q Consensus 80 ~rISkDAkeaLqecas-------------eFI~~LaseAne~A~~~kRKTItaEDVL~ALe~ 128 (238)
..+++||.+.|.+.+. .-+.-|...|..+|..+++..|+.+||..|++.
T Consensus 313 ~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 313 PHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp CCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHhhhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 4799999998888553 334456667889999999999999999999964
No 58
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=68.51 E-value=19 Score=30.33 Aligned_cols=51 Identities=6% Similarity=-0.072 Sum_probs=40.4
Q ss_pred CcccCHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhcCCCccCcccHHHHHhhc
Q 026469 79 HAKISDDAKETIQECVSE-------YISFITGEANERCQREQRKTITAEDVLWAMSKL 129 (238)
Q Consensus 79 ~~rISkDAkeaLqecase-------FI~~LaseAne~A~~~kRKTItaEDVL~ALe~L 129 (238)
.+.+++++.+.|.+.+.. -+..+...|...|..++|.+|+.+||..|+...
T Consensus 265 ~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~~~ 322 (350)
T 1g8p_A 265 KVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVATMA 322 (350)
T ss_dssp GCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHH
Confidence 458999999999887653 345566677778888899999999999998754
No 59
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=68.17 E-value=21 Score=30.39 Aligned_cols=51 Identities=18% Similarity=0.108 Sum_probs=36.9
Q ss_pred CcccCHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHhcCCCccCcccHHHHHhhc
Q 026469 79 HAKISDDAKETIQECVSEY-----------------------ISFITGEANERCQREQRKTITAEDVLWAMSKL 129 (238)
Q Consensus 79 ~~rISkDAkeaLqecaseF-----------------------I~~LaseAne~A~~~kRKTItaEDVL~ALe~L 129 (238)
++.|++++.+.+.+.+... ...|...|...|.-.+|..|+.+||..|+...
T Consensus 224 ~v~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~v 297 (331)
T 2r44_A 224 KVTISESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYDI 297 (331)
T ss_dssp TCBCCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 4678888888887655322 22345556667788899999999999988743
No 60
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=66.88 E-value=12 Score=28.31 Aligned_cols=34 Identities=18% Similarity=0.322 Sum_probs=27.3
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHh
Q 026469 82 ISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMS 127 (238)
Q Consensus 82 ISkDAkeaLqecaseFI~~LaseAne~A~~~kRKTItaEDVL~ALe 127 (238)
++++++++|+. |.+.|...+...|..+|++.||=
T Consensus 2 ~t~~~~~~l~~------------A~~~A~~~~~~~i~~eHlLlaLl 35 (143)
T 1k6k_A 2 LNQELELSLNM------------AFARAREHRHEFMTVEHLLLALL 35 (143)
T ss_dssp BCHHHHHHHHH------------HHHHHHHHTBSEECHHHHHHHHT
T ss_pred CCHHHHHHHHH------------HHHHHHHcCCCCcCHHHHHHHHH
Confidence 56677777744 56788888999999999999983
No 61
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=65.64 E-value=5.4 Score=28.34 Aligned_cols=27 Identities=30% Similarity=0.241 Sum_probs=21.9
Q ss_pred HHHHHHHHhcCCCccCcccHHHHHhhc
Q 026469 103 GEANERCQREQRKTITAEDVLWAMSKL 129 (238)
Q Consensus 103 seAne~A~~~kRKTItaEDVL~ALe~L 129 (238)
.+|...|.++++..|+.+|+..|+++.
T Consensus 42 ~eAa~~ai~~~~~~i~~~df~~Al~~v 68 (82)
T 2dzn_B 42 QEAGLRAVRKNRYVILQSDLEEAYATQ 68 (82)
T ss_dssp HHHHHHHHHTTCSEECHHHHHHHHHTT
T ss_pred HHHHHHHHHhccCCcCHHHHHHHHHHH
Confidence 355566777788999999999999876
No 62
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=64.57 E-value=6.8 Score=33.50 Aligned_cols=66 Identities=14% Similarity=0.019 Sum_probs=47.5
Q ss_pred CchhHHHHHHHhhCC---CCcccCHHHHHHHHHHHH------HHHHHHHHHHHHHHHhcCCCccCcccHHHHHhhcC
Q 026469 63 MPIANVIRIMRKILP---QHAKISDDAKETIQECVS------EYISFITGEANERCQREQRKTITAEDVLWAMSKLG 130 (238)
Q Consensus 63 LPkA~I~RImKeaLp---~~~rISkDAkeaLqecas------eFI~~LaseAne~A~~~kRKTItaEDVL~ALe~LG 130 (238)
|....+..|++..+. ....++.++.+.+.+.+. ..+.-+...|...|. ++.+|+.+||..|++++.
T Consensus 197 l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~~~ 271 (384)
T 2qby_B 197 YDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIVDYE 271 (384)
T ss_dssp CCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHHHh
Confidence 456777788877543 145789999988888775 123445556666666 678999999999998874
No 63
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=64.53 E-value=5.7 Score=28.78 Aligned_cols=34 Identities=29% Similarity=0.253 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHhcCCCccCcccHHHHHhhcCC
Q 026469 98 ISFITGEANERCQREQRKTITAEDVLWAMSKLGF 131 (238)
Q Consensus 98 I~~LaseAne~A~~~kRKTItaEDVL~ALe~LGF 131 (238)
|.-|..+|...|.+.++..|+.+|+..|+++.-.
T Consensus 40 l~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v~~ 73 (88)
T 3vlf_B 40 LRSVCTEAGMFAIRARRKVATEKDFLKAVDKVIS 73 (88)
T ss_dssp HHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhccccCCHHHHHHHHHHHhc
Confidence 5555667777888889999999999999987543
No 64
>1r4v_A Hypothetical protein AQ_328; structural genomics, all-alpha, histon fold, PSI, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.90A {Aquifex aeolicus} SCOP: a.22.1.4
Probab=64.40 E-value=10 Score=32.25 Aligned_cols=75 Identities=15% Similarity=0.193 Sum_probs=63.5
Q ss_pred CCchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhhcCCCcchHHHHHH
Q 026469 62 FMPIANVIRIMRKILPQHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTVY 141 (238)
Q Consensus 62 ~LPkA~I~RImKeaLp~~~rISkDAkeaLqecaseFI~~LaseAne~A~~~kRKTItaEDVL~ALe~LGF~dyve~Lk~~ 141 (238)
-+|.+-+.||.|.+.. .-|-|+-.+-+.+.++.=+.-|.--|.+.|+.++|.+|...|+= .-..+++.
T Consensus 26 vmg~~kferlFR~aag--LDvdK~d~kr~~d~V~~Kl~DLl~va~~~Ak~NgRDvI~~~DLP----------ITKGlqEs 93 (171)
T 1r4v_A 26 PKGFDKLDHYFRTELD--IDLTDETIELLLNSVKAAFGKLFYGAEQRARWNGRDFIALADLN----------ITKALEEH 93 (171)
T ss_dssp CTTHHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTTCSEECGGGSC----------CCHHHHHH
T ss_pred cCChHHHHHHHHHHhc--cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccCC----------ccHHHHHH
Confidence 7899999999999987 77889999999999999999999999999999999999998862 23455666
Q ss_pred HHHHHHH
Q 026469 142 LHRYREM 148 (238)
Q Consensus 142 L~~yRE~ 148 (238)
++.||+.
T Consensus 94 i~~Fr~l 100 (171)
T 1r4v_A 94 IKNFQKI 100 (171)
T ss_dssp HHHHHTC
T ss_pred HHHHHhc
Confidence 6677665
No 65
>2nxo_A Hypothetical protein SCO4506; PFAM, DUF178, NYSGXRC, 10093F, PSI-2, structural genomics, protein structure initiative; 2.04A {Streptomyces coelicolor} SCOP: c.94.1.1
Probab=63.80 E-value=35 Score=28.69 Aligned_cols=34 Identities=12% Similarity=0.239 Sum_probs=24.7
Q ss_pred ccCcccHHHHHhhcCCCcchHHHHHHHHHHHHHHh
Q 026469 116 TITAEDVLWAMSKLGFDDYIEPLTVYLHRYREMEG 150 (238)
Q Consensus 116 TItaEDVL~ALe~LGF~dyve~Lk~~L~~yRE~~~ 150 (238)
-+..+++..+++.+.|. +-+.....|+.|-+...
T Consensus 234 ~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~ 267 (291)
T 2nxo_A 234 AFDEDTLAKYFTTLDFR-FGAPQLEAVTEFARRVG 267 (291)
T ss_dssp SSCHHHHHHHHHHSBCC-CSHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHhCccC-CCHHHHHHHHHHHHHHH
Confidence 58889999999988875 45566667777755543
No 66
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=62.30 E-value=6.1 Score=28.78 Aligned_cols=30 Identities=33% Similarity=0.339 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHhcCCCccCcccHHHHHhhc
Q 026469 100 FITGEANERCQREQRKTITAEDVLWAMSKL 129 (238)
Q Consensus 100 ~LaseAne~A~~~kRKTItaEDVL~ALe~L 129 (238)
-|..+|...|.++.+..|+.+|+..|+++.
T Consensus 52 ~l~~eAa~~alr~~~~~I~~~df~~Al~~v 81 (86)
T 2krk_A 52 GVCTEAGMYALRERRVHVTQEDFEMAVAKV 81 (86)
T ss_dssp HHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 344566677778888999999999999763
No 67
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=61.88 E-value=5.3 Score=28.16 Aligned_cols=33 Identities=27% Similarity=0.195 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHhcCCCccCcccHHHHHhhcC
Q 026469 98 ISFITGEANERCQREQRKTITAEDVLWAMSKLG 130 (238)
Q Consensus 98 I~~LaseAne~A~~~kRKTItaEDVL~ALe~LG 130 (238)
|.-|..+|...|.+..+..|+.+|+..|+++.-
T Consensus 40 i~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~~ 72 (83)
T 3aji_B 40 INSICQESGMLAVRENRYIVLAKDFEKAYKTVI 72 (83)
T ss_dssp HHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHc
Confidence 444556777888888899999999999998653
No 68
>2lfc_A Fumarate reductase, flavoprotein subunit; structural genomics, northeast structural genomics consortiu PSI-biology; NMR {Lactobacillus plantarum}
Probab=61.28 E-value=21 Score=28.29 Aligned_cols=36 Identities=11% Similarity=0.169 Sum_probs=27.8
Q ss_pred CccCcccHHHHHhhcCCCcchHHHHHHHHHHHHHHhhh
Q 026469 115 KTITAEDVLWAMSKLGFDDYIEPLTVYLHRYREMEGER 152 (238)
Q Consensus 115 KTItaEDVL~ALe~LGF~dyve~Lk~~L~~yRE~~~~r 152 (238)
..++++.|-...+++|++ .+.|++.+++|.+..+..
T Consensus 91 ~~~kadTleeLA~~~gid--~~~L~~TV~~yN~~~~~G 126 (160)
T 2lfc_A 91 PVFVKGSLESAAEQAGIV--VDELVQTVKNYQGYVQDG 126 (160)
T ss_dssp CSEECSSHHHHHHHHTCC--HHHHHHHHHHHHHHHTTS
T ss_pred ceEecCCHHHHHHHhCCC--HHHHHHHHHHHHHHHHcC
Confidence 346777777777889986 478899999999887644
No 69
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=60.07 E-value=19 Score=27.18 Aligned_cols=38 Identities=8% Similarity=0.147 Sum_probs=31.4
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhhcC
Q 026469 81 KISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLG 130 (238)
Q Consensus 81 rISkDAkeaLqecaseFI~~LaseAne~A~~~kRKTItaEDVL~ALe~LG 130 (238)
+++..++++|+. |.+.|...+...|.++|++.||=+-+
T Consensus 5 ~~t~~~~~~l~~------------A~~~A~~~~~~~i~~eHlLlaLl~~~ 42 (148)
T 1khy_A 5 RLTNKFQLALAD------------AQSLALGHDNQFIEPLHLMSALLNQE 42 (148)
T ss_dssp CBCHHHHHHHHH------------HHHHHHHTTCSSBCHHHHHHHHHTCT
T ss_pred hhhHHHHHHHHH------------HHHHHHHcCCCccCHHHHHHHHHcCC
Confidence 678888888854 56789999999999999999996544
No 70
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=58.84 E-value=14 Score=28.12 Aligned_cols=64 Identities=11% Similarity=0.104 Sum_probs=41.5
Q ss_pred CCchhHHHHHHHhhCCC-CcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHh
Q 026469 62 FMPIANVIRIMRKILPQ-HAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMS 127 (238)
Q Consensus 62 ~LPkA~I~RImKeaLp~-~~rISkDAkeaLqecaseFI~~LaseAne~A~~~kRKTItaEDVL~ALe 127 (238)
.++...+.++++..+.. +..++.++.+.|.+.+.--+..+-......+... ++|+.+||..++.
T Consensus 160 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~~--~~I~~~~v~~~~~ 224 (226)
T 2chg_A 160 PVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAIG--EVVDADTIYQITA 224 (226)
T ss_dssp CCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--SCBCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC--ceecHHHHHHHhc
Confidence 34566677777665431 3568999988887766544444444444444333 7999999999875
No 71
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=57.87 E-value=9.6 Score=29.06 Aligned_cols=38 Identities=21% Similarity=0.387 Sum_probs=31.5
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhhcC
Q 026469 81 KISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLG 130 (238)
Q Consensus 81 rISkDAkeaLqecaseFI~~LaseAne~A~~~kRKTItaEDVL~ALe~LG 130 (238)
+++..++++|+. |.+.|...+...|.++|++.||=+-+
T Consensus 5 ~~t~~~~~al~~------------A~~~A~~~~h~~i~~eHlLlaLl~~~ 42 (150)
T 2y1q_A 5 RFTERAQKVLAL------------AQEEALRLGHNNIGTEHILLGLVREG 42 (150)
T ss_dssp CBCHHHHHHHHH------------HHHHHHHTTCSEECHHHHHHHHHHHC
T ss_pred hhCHHHHHHHHH------------HHHHHHHcCCCCccHHHHHHHHHhCC
Confidence 678888888855 56789999999999999999986544
No 72
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=56.72 E-value=12 Score=28.82 Aligned_cols=37 Identities=22% Similarity=0.297 Sum_probs=31.2
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhhc
Q 026469 81 KISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKL 129 (238)
Q Consensus 81 rISkDAkeaLqecaseFI~~LaseAne~A~~~kRKTItaEDVL~ALe~L 129 (238)
+++..++++|+. |.+.|...+...|.+||++.||=+-
T Consensus 6 ~~t~~~~~~l~~------------A~~~A~~~~~~~i~~eHLLlaLl~~ 42 (146)
T 3fh2_A 6 RFTDRARRVIVL------------AQEEARMLNHNYIGTEHILLGLIHE 42 (146)
T ss_dssp GBCHHHHHHHHH------------HHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred hcCHHHHHHHHH------------HHHHHHHcCCCCchHHHHHHHHHhC
Confidence 678888888855 5678999999999999999998654
No 73
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=54.90 E-value=24 Score=27.52 Aligned_cols=63 Identities=6% Similarity=0.044 Sum_probs=38.5
Q ss_pred chhHHHHHHHhhCC-CCcccCHHHHHHHHHHHHH---HHHHHHHHHHHHHHhcCCCccCcccHHHHHh
Q 026469 64 PIANVIRIMRKILP-QHAKISDDAKETIQECVSE---YISFITGEANERCQREQRKTITAEDVLWAMS 127 (238)
Q Consensus 64 PkA~I~RImKeaLp-~~~rISkDAkeaLqecase---FI~~LaseAne~A~~~kRKTItaEDVL~ALe 127 (238)
....+.++++..+. .+..++.++.+.|.+.+.- -+.-+...+...|..++ ++|+.+||..+|+
T Consensus 175 ~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~a~~~~-~~It~~~v~~~l~ 241 (242)
T 3bos_A 175 MDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMARDLRTLFDVLDRLDKASMVHQ-RKLTIPFVKEMLR 241 (242)
T ss_dssp CGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHT-CCCCHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhC-CCCcHHHHHHHhh
Confidence 34455555555432 2367899999888876542 22223334445555454 5699999998875
No 74
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=53.09 E-value=36 Score=29.48 Aligned_cols=69 Identities=20% Similarity=0.251 Sum_probs=48.1
Q ss_pred hhHHHHHHHhhCC-CCcccCHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcCCCccCcccHHHHHhhcCCCc
Q 026469 65 IANVIRIMRKILP-QHAKISDDAKETIQECVS---EYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDD 133 (238)
Q Consensus 65 kA~I~RImKeaLp-~~~rISkDAkeaLqecas---eFI~~LaseAne~A~~~kRKTItaEDVL~ALe~LGF~d 133 (238)
...+..|+++... .++.++.|+...|.+.+. ..+.-+...+.++|...++..|+.++|..|++.++++.
T Consensus 182 ~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~~R~a~~ll~~~~~~a~~~~~~~It~~~v~~al~~~~~~~ 254 (334)
T 1in4_A 182 VKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVLNIDD 254 (334)
T ss_dssp HHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHTCCT
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHhCCCc
Confidence 3456666654421 136788998888876532 23444556677778888888999999999999988764
No 75
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=53.01 E-value=17 Score=29.97 Aligned_cols=33 Identities=30% Similarity=0.310 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHhcCCCccCcccHHHHHhhc
Q 026469 97 YISFITGEANERCQREQRKTITAEDVLWAMSKL 129 (238)
Q Consensus 97 FI~~LaseAne~A~~~kRKTItaEDVL~ALe~L 129 (238)
-|.-|..+|...|...++.+|+.+||..|++++
T Consensus 226 ~i~~l~~~a~~~a~~~~~~~I~~~d~~~al~~~ 258 (285)
T 3h4m_A 226 ELKAICTEAGMNAIRELRDYVTMDDFRKAVEKI 258 (285)
T ss_dssp HHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCcCCHHHHHHHHHHH
Confidence 466677888889999999999999999998643
No 76
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=52.67 E-value=13 Score=28.67 Aligned_cols=39 Identities=18% Similarity=0.261 Sum_probs=32.4
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhhcC
Q 026469 80 AKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLG 130 (238)
Q Consensus 80 ~rISkDAkeaLqecaseFI~~LaseAne~A~~~kRKTItaEDVL~ALe~LG 130 (238)
-+++..++++|+. |.+.|...+...|.+||++.||=+-+
T Consensus 6 ~~~T~~a~~~l~~------------A~~~A~~~~~~~i~~eHLLlaLl~~~ 44 (145)
T 3fes_A 6 NRFTQRAKKAIDL------------AFESAKSLGHNIVGSEHILLGLLREE 44 (145)
T ss_dssp CCBCHHHHHHHHH------------HHHHHHHTTCSEECHHHHHHHHHHHC
T ss_pred cccCHHHHHHHHH------------HHHHHHHcCCCCccHHHHHHHHHhCC
Confidence 3688888888865 55789999999999999999987654
No 77
>2i6e_A Hypothetical protein; NYSGXRC,10093B, structural genomics, PSI-2, protein structure initiative; 2.50A {Deinococcus radiodurans} SCOP: c.94.1.1
Probab=49.89 E-value=63 Score=27.92 Aligned_cols=61 Identities=8% Similarity=0.162 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhhcCCCcchHHHHHHHHHHHHHH
Q 026469 85 DAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTVYLHRYREME 149 (238)
Q Consensus 85 DAkeaLqecaseFI~~LaseAne~A~~~kRKTItaEDVL~ALe~LGF~dyve~Lk~~L~~yRE~~ 149 (238)
+..+++.++..-........+...++.. -+..+.|..++..+.| ++-+..+..|+.|-+..
T Consensus 218 ~~~~~l~~a~~~~~~~~~e~~~~~a~~~---gl~~~~i~~yl~~~~~-~l~~~~~~~l~~~~~~~ 278 (301)
T 2i6e_A 218 ALLQAMREARRRGIGHLAEVSQRHAEKL---GLPERVVQHYLWNFRY-HLEAPDRLGLREFADLA 278 (301)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHTT---TCCHHHHHHHHHTCBC-SCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHHHc---CCCHHHHHHHHHhCee-CCCHHHHHHHHHHHHHH
Confidence 4555565554444444433233333332 3888999999988887 56677777788776655
No 78
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=47.67 E-value=25 Score=26.82 Aligned_cols=64 Identities=8% Similarity=0.116 Sum_probs=41.1
Q ss_pred CchhHHHHHHHhhCC-CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHh
Q 026469 63 MPIANVIRIMRKILP-QHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMS 127 (238)
Q Consensus 63 LPkA~I~RImKeaLp-~~~rISkDAkeaLqecaseFI~~LaseAne~A~~~kRKTItaEDVL~ALe 127 (238)
|....+..+++..+. ....++.++.+.|.+.+.--...+-......+ ..++++|+.+||..++.
T Consensus 185 l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~~~~~~~~~~~~-~~~~~~i~~~~v~~~~~ 249 (250)
T 1njg_A 185 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAI-ASGDGQVSTQAVSAMLG 249 (250)
T ss_dssp CCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHH-TTTTSSBCHHHHHHHSC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH-hccCceecHHHHHHHhC
Confidence 455667777765543 23578999988888777554444444333333 33456899999988863
No 79
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA; structural genomics; 2.60A {Methylobacillus flagellatus}
Probab=44.93 E-value=41 Score=28.64 Aligned_cols=97 Identities=10% Similarity=0.124 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHhcCCCccCcccHHHHHhhcCCC-------cchHHHHHHHHHHHHHHhhhcC
Q 026469 84 DDAKETIQECVSEYISFITG--EANERCQREQRKTITAEDVLWAMSKLGFD-------DYIEPLTVYLHRYREMEGERGS 154 (238)
Q Consensus 84 kDAkeaLqecaseFI~~Las--eAne~A~~~kRKTItaEDVL~ALe~LGF~-------dyve~Lk~~L~~yRE~~~~rks 154 (238)
.|....+.++..+-+.++.. .--+.++--.+.-+..+++..+++...+. .+-+.+...++++.+...+.+-
T Consensus 215 p~~~~~~~~a~~~a~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~ 294 (348)
T 3uif_A 215 PEITQAIVTAYLKSVHWVAQDENKETYIREYSNKIYPESVNRREYDQDNVSWRQRWSPLYDVALQEHYRKAVAYAQASGL 294 (348)
T ss_dssp HHHHHHHHHHHHHHHHHHHSGGGHHHHHHHTSCTTSCHHHHHHTTTTCSSCTTGGGCCCCCHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHhcccccccccccCcCCCHHHHHHHHHHHHHHHHCCC
Confidence 34455555555555555544 11112221122567888888888876643 1223345556666665555544
Q ss_pred CCCCCCCCCCCCCc-------ccCCccccccCCcc
Q 026469 155 IRGEPPLVKRPPVE-------FRTLGVAAFAAPAA 182 (238)
Q Consensus 155 ~k~~~p~~k~~~~~-------~~~~~~~~~~~~~~ 182 (238)
.+..++. .. -++ ...+|...|.|++.
T Consensus 295 i~~~~~~-~~-~~d~~~~~~a~~~l~~~~~w~~~~ 327 (348)
T 3uif_A 295 TRTQADV-QQ-MLNPHFVATALKELKLEGFWTPNA 327 (348)
T ss_dssp CSSCCCH-HH-HBCTHHHHHHHHHTTCTTTSCCCC
T ss_pred CCCCCCH-HH-HhCHHHHHHHHHHcCCcccCcccc
Confidence 3333311 11 111 24466666666654
No 80
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=43.01 E-value=90 Score=22.40 Aligned_cols=38 Identities=16% Similarity=0.110 Sum_probs=26.4
Q ss_pred HHHHHHHhcCCCccCcccHHHHHhhcCCCcchHHHHHH
Q 026469 104 EANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTVY 141 (238)
Q Consensus 104 eAne~A~~~kRKTItaEDVL~ALe~LGF~dyve~Lk~~ 141 (238)
.+....-.++.-.|+.+++..+|+.+|..-=.+.++..
T Consensus 100 ~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~ 137 (161)
T 3fwb_A 100 RAFQLFDDDHTGKISIKNLRRVAKELGETLTDEELRAM 137 (161)
T ss_dssp HHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHcCCCCCeEeHHHHHHHHHHhCCCCCHHHHHHH
Confidence 44555556677789999999999999865433344433
No 81
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=42.51 E-value=62 Score=27.66 Aligned_cols=69 Identities=13% Similarity=0.040 Sum_probs=50.7
Q ss_pred CCchhHHHHHHHhhCC---CCcccCHHHHHHHHHHHH---------HHHHHHHHHHHHHHHhcCCCccCcccHHHHHhhc
Q 026469 62 FMPIANVIRIMRKILP---QHAKISDDAKETIQECVS---------EYISFITGEANERCQREQRKTITAEDVLWAMSKL 129 (238)
Q Consensus 62 ~LPkA~I~RImKeaLp---~~~rISkDAkeaLqecas---------eFI~~LaseAne~A~~~kRKTItaEDVL~ALe~L 129 (238)
.|....+..|++..+. ....++.++.+.|.+.+. .++..+...|...+...++.+|+.+||..++.++
T Consensus 214 ~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~ 293 (412)
T 1w5s_A 214 AYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSEN 293 (412)
T ss_dssp CCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 3455667777754322 123588999888888777 3677777888888888899999999999898776
Q ss_pred C
Q 026469 130 G 130 (238)
Q Consensus 130 G 130 (238)
.
T Consensus 294 ~ 294 (412)
T 1w5s_A 294 E 294 (412)
T ss_dssp -
T ss_pred h
Confidence 4
No 82
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata} SCOP: a.39.1.4
Probab=39.13 E-value=92 Score=21.40 Aligned_cols=71 Identities=11% Similarity=0.143 Sum_probs=44.6
Q ss_pred CchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHH---------HHHHHHHHHhcCCCccCcccHHHHHhhc---C
Q 026469 63 MPIANVIRIMRKILPQHAKISDDAKETIQECVSEYISFI---------TGEANERCQREQRKTITAEDVLWAMSKL---G 130 (238)
Q Consensus 63 LPkA~I~RImKeaLp~~~rISkDAkeaLqecaseFI~~L---------aseAne~A~~~kRKTItaEDVL~ALe~L---G 130 (238)
+....|.+|++..-. +-.|+-+ +|+..+ ...+....-.++.-.|+.+++..+|..+ |
T Consensus 6 ~s~~ei~~~~~~~d~-~g~i~~~----------eF~~~~~~~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~g 74 (109)
T 5pal_A 6 LKADDINKAISAFKD-PGTFDYK----------RFFHLVGLKGKTDAQVKEVFEILDKDQSGFIEEEELKGVLKGFSAHG 74 (109)
T ss_dssp SCHHHHHHHHHHTCS-TTCCCHH----------HHHHHHTCTTCCHHHHHHHHHHHCTTCSSEECHHHHHTHHHHHCTTC
T ss_pred CCHHHHHHHHHHhCC-CCcCcHH----------HHHHHHhhccCcHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHHHcC
Confidence 566777888876643 4455533 222222 2345566667788899999999999998 6
Q ss_pred CCcchHHHHHHHHH
Q 026469 131 FDDYIEPLTVYLHR 144 (238)
Q Consensus 131 F~dyve~Lk~~L~~ 144 (238)
..--.+.++..+..
T Consensus 75 ~~~~~~~~~~~~~~ 88 (109)
T 5pal_A 75 RDLNDTETKALLAA 88 (109)
T ss_dssp CCCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 65444445444443
No 83
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=38.25 E-value=1.3e+02 Score=26.33 Aligned_cols=69 Identities=10% Similarity=0.154 Sum_probs=46.6
Q ss_pred chhHHHHHHHhhCCC-CcccCHHHHHHHHHHHHH----HHHHHHHHHHHHHHhc------------CCCccCcccHHHHH
Q 026469 64 PIANVIRIMRKILPQ-HAKISDDAKETIQECVSE----YISFITGEANERCQRE------------QRKTITAEDVLWAM 126 (238)
Q Consensus 64 PkA~I~RImKeaLp~-~~rISkDAkeaLqecase----FI~~LaseAne~A~~~------------kRKTItaEDVL~AL 126 (238)
+......|++..+.. ...+++++.+.|.+.+.- -|..|...|...+.++ ....|+.+|+..|+
T Consensus 283 ~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel~~~~~~~~~~~~~~~i~~~d~~~al 362 (389)
T 3vfd_A 283 NEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPEQVKNMSASEMRNIRLSDFTESL 362 (389)
T ss_dssp CHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTSCCC---CCSSSCCCCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhhhhhccchhhcCCcCHHHHHHHH
Confidence 445555666655442 356888888888776543 4556666777666655 45689999999999
Q ss_pred hhcCCC
Q 026469 127 SKLGFD 132 (238)
Q Consensus 127 e~LGF~ 132 (238)
+...-.
T Consensus 363 ~~~~~s 368 (389)
T 3vfd_A 363 KKIKRS 368 (389)
T ss_dssp HHCCCS
T ss_pred HHcCCC
Confidence 876543
No 84
>2i7a_A Calpain 13; calcium-dependent cytoplasmic cysteine proteinases, like, EF-hand, structural genomics, structural genomics CON SGC, hydrolase; 1.80A {Homo sapiens}
Probab=38.14 E-value=1.4e+02 Score=23.25 Aligned_cols=64 Identities=6% Similarity=0.114 Sum_probs=38.0
Q ss_pred CchhHHHHHHHhhCCC-CcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhhc----CCC
Q 026469 63 MPIANVIRIMRKILPQ-HAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKL----GFD 132 (238)
Q Consensus 63 LPkA~I~RImKeaLp~-~~rISkDAkeaLqecaseFI~~LaseAne~A~~~kRKTItaEDVL~ALe~L----GF~ 132 (238)
+....|.+|++..-.+ +-+|+-+--..+..... -..+|....- ++.-+|+.+++..+|+.+ |+.
T Consensus 43 ~~~~~~~~l~~~~D~d~~G~I~f~EF~~~~~~~~-----~l~~aF~~fD-d~~G~I~~~El~~~l~~l~~~~G~~ 111 (174)
T 2i7a_A 43 FSLDECRSLVALMELKVNGRLDQEEFARLWKRLV-----HYQHVFQKVQ-TSPGVLLSSDLWKAIENTDFLRGIF 111 (174)
T ss_dssp CCHHHHHHHHHHHCSSCSSEECHHHHHHHHHHHH-----HHHHHHHHHC-SBTTBEEGGGHHHHHHTCGGGTTCC
T ss_pred CCHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHHH-----HHHHHHHHhc-CCCCcCCHHHHHHHHHHhHhccCCC
Confidence 3455566666654322 23555432222111111 1245677777 888899999999999999 875
No 85
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=37.96 E-value=26 Score=28.60 Aligned_cols=64 Identities=13% Similarity=0.141 Sum_probs=39.5
Q ss_pred hHHHHHHHhhCCCCcccCHHH-HHHHHHHHH----HHHHHHHHHHHHHHHhcCCCccCcccHHHHHhhcC
Q 026469 66 ANVIRIMRKILPQHAKISDDA-KETIQECVS----EYISFITGEANERCQREQRKTITAEDVLWAMSKLG 130 (238)
Q Consensus 66 A~I~RImKeaLp~~~rISkDA-keaLqecas----eFI~~LaseAne~A~~~kRKTItaEDVL~ALe~LG 130 (238)
.....|++..+. ...++.|+ ...+.+... .-|.-+..+|...|...++++|+.+||..|+++.-
T Consensus 185 ~~r~~il~~~~~-~~~l~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~ 253 (257)
T 1lv7_A 185 RGREQILKVHMR-RVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKIM 253 (257)
T ss_dssp HHHHHHHHHHHT-TSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh-cCCCCccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHh
Confidence 334445555443 23444443 333433221 23455666788888888999999999999998653
No 86
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=36.51 E-value=1.4e+02 Score=22.77 Aligned_cols=14 Identities=14% Similarity=0.143 Sum_probs=11.3
Q ss_pred cCCchhHHHHHHHh
Q 026469 61 RFMPIANVIRIMRK 74 (238)
Q Consensus 61 ~~LPkA~I~RImKe 74 (238)
+.++..+|.|.++.
T Consensus 51 lgis~~TV~rwl~r 64 (159)
T 2k27_A 51 LRVSHGCVSKILGR 64 (159)
T ss_dssp HTCCSHHHHHHHCC
T ss_pred HCcCHHHHHHHHHH
Confidence 45788899999876
No 87
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=36.47 E-value=22 Score=33.29 Aligned_cols=32 Identities=31% Similarity=0.274 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHhcCCCccCcccHHHHHhh
Q 026469 97 YISFITGEANERCQREQRKTITAEDVLWAMSK 128 (238)
Q Consensus 97 FI~~LaseAne~A~~~kRKTItaEDVL~ALe~ 128 (238)
-|.-|..+|.-.|.+++|..|+.+|+..|+++
T Consensus 382 di~~l~~eA~~~a~r~~~~~i~~~d~~~A~~~ 413 (428)
T 4b4t_K 382 VIAAIMQEAGLRAVRKNRYVILQSDLEEAYAT 413 (428)
T ss_dssp HHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Confidence 36778888989999999999999999999864
No 88
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=36.17 E-value=28 Score=28.34 Aligned_cols=38 Identities=21% Similarity=0.280 Sum_probs=31.2
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhhcC
Q 026469 81 KISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLG 130 (238)
Q Consensus 81 rISkDAkeaLqecaseFI~~LaseAne~A~~~kRKTItaEDVL~ALe~LG 130 (238)
+++..++++|+. |.+.|...+-..|.+||++.||=+-+
T Consensus 24 kfT~~a~~aL~~------------A~~~A~~~~h~~I~~EHLLlaLL~~~ 61 (171)
T 3zri_A 24 KLNAQSKLALEQ------------AASLCIERQHPEVTLEHYLDVLLDNP 61 (171)
T ss_dssp HBCHHHHHHHHH------------HHHHHHHHTCSEECHHHHHHHHTTCT
T ss_pred HcCHHHHHHHHH------------HHHHHHHcCCCcccHHHHHHHHHHcc
Confidence 678888888855 55789999999999999999986544
No 89
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=34.69 E-value=84 Score=23.42 Aligned_cols=38 Identities=21% Similarity=0.173 Sum_probs=29.8
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhhc
Q 026469 80 AKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKL 129 (238)
Q Consensus 80 ~rISkDAkeaLqecaseFI~~LaseAne~A~~~kRKTItaEDVL~ALe~L 129 (238)
..+|..++.+|++ |...|...+...|+.+|++.||-+-
T Consensus 78 ~~~s~~~~~~l~~------------A~~~A~~~~~~~i~~ehLLlall~~ 115 (143)
T 1k6k_A 78 TQPTLSFQRVLQR------------AVFHVQSSGRNEVTGANVLVAIFSE 115 (143)
T ss_dssp CEECHHHHHHHHH------------HHHHHHSSSCSCBCHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHH------------HHHHHHHcCCCccCHHHHHHHHHhC
Confidence 4577777777754 5677888889999999999999653
No 90
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=34.49 E-value=52 Score=25.12 Aligned_cols=39 Identities=18% Similarity=0.173 Sum_probs=31.6
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhhcC
Q 026469 80 AKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLG 130 (238)
Q Consensus 80 ~rISkDAkeaLqecaseFI~~LaseAne~A~~~kRKTItaEDVL~ALe~LG 130 (238)
..+|.+++.+|.+ |...|...+...|+.+||+.||-+-+
T Consensus 80 ~~~s~~~~~vL~~------------A~~~a~~~~~~~i~~eHlLlall~~~ 118 (146)
T 3fh2_A 80 IPFTPRAKKVLEL------------SLREGLQMGHKYIGTEFLLLGLIREG 118 (146)
T ss_dssp CCBCHHHHHHHHH------------HHHHHHHTTCSSBCHHHHHHHHHHHC
T ss_pred CcCCHHHHHHHHH------------HHHHHHHcCCCcCcHHHHHHHHHhCC
Confidence 5688888888866 45678888999999999999986543
No 91
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=33.84 E-value=59 Score=29.99 Aligned_cols=69 Identities=9% Similarity=0.149 Sum_probs=45.7
Q ss_pred CCchhHHHHHHHhhCC--------CCcccCHHHHHHHHHHHHHHHH---HHHHHHHHHHHhc--CCCccCcccHHHHHhh
Q 026469 62 FMPIANVIRIMRKILP--------QHAKISDDAKETIQECVSEYIS---FITGEANERCQRE--QRKTITAEDVLWAMSK 128 (238)
Q Consensus 62 ~LPkA~I~RImKeaLp--------~~~rISkDAkeaLqecaseFI~---~LaseAne~A~~~--kRKTItaEDVL~ALe~ 128 (238)
.++...+..|++..+. ....|+.++.+.|.+.+.--+. -+...|...|... ++++|+.+||..++..
T Consensus 164 ~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~~l~~ 243 (447)
T 3pvs_A 164 SLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGE 243 (447)
T ss_dssp CCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCBCTTSCEECCHHHHHHHHTC
T ss_pred CcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccccCCCCccCHHHHHHHHhh
Confidence 3567777788777654 2467999999999886532222 2222344444422 5678999999999987
Q ss_pred cC
Q 026469 129 LG 130 (238)
Q Consensus 129 LG 130 (238)
.-
T Consensus 244 ~~ 245 (447)
T 3pvs_A 244 RS 245 (447)
T ss_dssp CC
T ss_pred hh
Confidence 63
No 92
>1bh9_A TAFII18; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_A*
Probab=33.66 E-value=1e+02 Score=20.33 Aligned_cols=39 Identities=15% Similarity=0.191 Sum_probs=30.9
Q ss_pred HHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHH
Q 026469 68 VIRIMRKILPQHAKISDDAKETIQECVSEYISFITGEANE 107 (238)
Q Consensus 68 I~RImKeaLp~~~rISkDAkeaLqecaseFI~~LaseAne 107 (238)
|+.+|-.-. +...-..|+..+|.+.+.+||..|..+|.+
T Consensus 6 i~~mMy~fG-D~~~P~~ETv~llEeiV~~~i~~l~~~A~~ 44 (45)
T 1bh9_A 6 LRCMMYGFG-DDQNPYTESVDILEDLVIEFITEMTHKAMS 44 (45)
T ss_dssp HHHHHHHTT-SCSSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCCCCcHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455555443 356778899999999999999999998875
No 93
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=33.64 E-value=47 Score=27.66 Aligned_cols=70 Identities=17% Similarity=0.154 Sum_probs=46.6
Q ss_pred CchhHHHHHHHhhCCC-CcccCHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcCCCccCcccHHHHHhhcCCC
Q 026469 63 MPIANVIRIMRKILPQ-HAKISDDAKETIQECVS---EYISFITGEANERCQREQRKTITAEDVLWAMSKLGFD 132 (238)
Q Consensus 63 LPkA~I~RImKeaLp~-~~rISkDAkeaLqecas---eFI~~LaseAne~A~~~kRKTItaEDVL~ALe~LGF~ 132 (238)
++...+..+++..+.. +..++.++.+.|.+.+. ..+..+...+...|...++..|+.+|+..+++.+..+
T Consensus 168 ~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~~~~ 241 (324)
T 1hqc_A 168 YTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALAALGLD 241 (324)
T ss_dssp CCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSCHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccc
Confidence 4566667777665432 36799999988887652 2233333444445555667889999999999887654
No 94
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=33.15 E-value=30 Score=32.87 Aligned_cols=67 Identities=25% Similarity=0.197 Sum_probs=42.6
Q ss_pred cCCchhH-HHHHHHhhCCCCcccCHHH-HHHHHHHHH----HHHHHHHHHHHHHHHhcCCCccCcccHHHHHhh
Q 026469 61 RFMPIAN-VIRIMRKILPQHAKISDDA-KETIQECVS----EYISFITGEANERCQREQRKTITAEDVLWAMSK 128 (238)
Q Consensus 61 ~~LPkA~-I~RImKeaLp~~~rISkDA-keaLqecas----eFI~~LaseAne~A~~~kRKTItaEDVL~ALe~ 128 (238)
+.+|-.. -..|++-.+. .+.++.|. .+.|.+.+. .=|.-|..+|.-.|.+++|..|+.+|+..|+++
T Consensus 350 v~lPd~~~R~~Il~~~l~-~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~~~~It~eDf~~Al~r 422 (437)
T 4b4t_I 350 FENPDLSTKKKILGIHTS-KMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERRMQVTAEDFKQAKER 422 (437)
T ss_dssp CCCCCHHHHHHHHHHHHT-TSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHHHHhc-CCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 3455332 2344444443 34455442 344444332 346777888999999999999999999999864
No 95
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=32.74 E-value=1.3e+02 Score=24.66 Aligned_cols=57 Identities=12% Similarity=0.144 Sum_probs=38.0
Q ss_pred cccCHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcC------------CCccCcccHHHHHhhcCCCcchH
Q 026469 80 AKISDDAKETIQECVSE----YISFITGEANERCQREQ------------RKTITAEDVLWAMSKLGFDDYIE 136 (238)
Q Consensus 80 ~rISkDAkeaLqecase----FI~~LaseAne~A~~~k------------RKTItaEDVL~ALe~LGF~dyve 136 (238)
..++.++.+.|.+.+.- -|..|..+|...+.++. ...|+.+|+..|+++..-.-..+
T Consensus 207 ~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~~s~~~~ 279 (297)
T 3b9p_A 207 SPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVEQVKCLDISAMRAITEQDFHSSLKRIRRSVAPQ 279 (297)
T ss_dssp CCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC--------CCCCCCCCHHHHHHHTTSCCCSSCHH
T ss_pred CCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhcccccccccCCcCHHHHHHHHHHcCCCCCHH
Confidence 35788888777766543 33455666666665543 36899999999999876544433
No 96
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=32.59 E-value=23 Score=34.04 Aligned_cols=57 Identities=9% Similarity=0.244 Sum_probs=42.4
Q ss_pred HhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccC--cccHHHHHhhc
Q 026469 73 RKILPQHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTIT--AEDVLWAMSKL 129 (238)
Q Consensus 73 KeaLp~~~rISkDAkeaLqecaseFI~~LaseAne~A~~~kRKTIt--aEDVL~ALe~L 129 (238)
|+++.+.--|-+|.+.+|++||...=.||.......-..++++++. -.+|..+|..+
T Consensus 427 Ke~i~~~~ei~~ei~~a~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (530)
T 2zbk_B 427 KESIAEVENIEKEIKNALMEVARKLKQYLSEKRKEQEAKKKLLAYLKYIPEVSRSLATF 485 (530)
T ss_dssp CSCBCCCHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHT
T ss_pred ccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444568899999999999999999998776666666666654 45777777753
No 97
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=32.39 E-value=40 Score=28.28 Aligned_cols=68 Identities=22% Similarity=0.198 Sum_probs=42.4
Q ss_pred CCchhHHHHHHHhhCC-CCcccCHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCC-CccCcccHHHHHhhcC
Q 026469 62 FMPIANVIRIMRKILP-QHAKISDDAKETIQECVS----EYISFITGEANERCQREQR-KTITAEDVLWAMSKLG 130 (238)
Q Consensus 62 ~LPkA~I~RImKeaLp-~~~rISkDAkeaLqecas----eFI~~LaseAne~A~~~kR-KTItaEDVL~ALe~LG 130 (238)
.++...+.++++..+. .++.|+.++.+.|.+.+. ..+..|- .+...+...++ +.|+.+||..++..+.
T Consensus 191 ~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l~-~~~~~~~~~~~~~~It~~~v~~~~~~~~ 264 (353)
T 1sxj_D 191 ALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQ-SASKGAQYLGDGKNITSTQVEELAGVVP 264 (353)
T ss_dssp CCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSCHHHHHHHHH-HTHHHHHHHCSCCCCCHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHH-HHHHhcCCCccCccccHHHHHHHhCCCC
Confidence 3555666666665442 356799999998887643 3333333 23334444333 3899999999888554
No 98
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=32.10 E-value=30 Score=33.09 Aligned_cols=32 Identities=31% Similarity=0.297 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHhcCCCccCcccHHHHHhh
Q 026469 97 YISFITGEANERCQREQRKTITAEDVLWAMSK 128 (238)
Q Consensus 97 FI~~LaseAne~A~~~kRKTItaEDVL~ALe~ 128 (238)
-|.-|..+|...|.+++|+.|+.+|++.|+++
T Consensus 418 DI~~l~~eAa~~Air~~~~~it~~Df~~Al~k 449 (467)
T 4b4t_H 418 ELRSVCTEAGMFAIRARRKVATEKDFLKAVDK 449 (467)
T ss_dssp HHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 36677788888999999999999999999875
No 99
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=32.06 E-value=32 Score=32.26 Aligned_cols=32 Identities=28% Similarity=0.290 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHhcCCCccCcccHHHHHhh
Q 026469 97 YISFITGEANERCQREQRKTITAEDVLWAMSK 128 (238)
Q Consensus 97 FI~~LaseAne~A~~~kRKTItaEDVL~ALe~ 128 (238)
=|..|..+|.-.|.+++|..|+.+|+..|+++
T Consensus 390 Di~~l~~eA~~~air~~~~~i~~~d~~~Al~~ 421 (437)
T 4b4t_L 390 DIRNCATEAGFFAIRDDRDHINPDDLMKAVRK 421 (437)
T ss_dssp HHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 36677788888999999999999999999875
No 100
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria, structural genomics consortium, SGC, transfe; 2.10A {Plasmodium falciparum}
Probab=32.04 E-value=1.6e+02 Score=22.15 Aligned_cols=29 Identities=7% Similarity=0.249 Sum_probs=23.5
Q ss_pred HHHHHHHhcCCCccCcccHHHHHhhcCCC
Q 026469 104 EANERCQREQRKTITAEDVLWAMSKLGFD 132 (238)
Q Consensus 104 eAne~A~~~kRKTItaEDVL~ALe~LGF~ 132 (238)
++....-.++--+|+.+++..+|+.+|+.
T Consensus 43 ~~F~~~D~d~~G~i~~~El~~~l~~~g~~ 71 (180)
T 3mse_B 43 ELFYKLDTNHNGSLSHREIYTVLASVGIK 71 (180)
T ss_dssp HHHHHHCTTCSSSEEHHHHHHHHHHTTCC
T ss_pred HHHHHhCCCCCCcCCHHHHHHHHHHcCCC
Confidence 34455556777899999999999999986
No 101
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=31.92 E-value=79 Score=26.62 Aligned_cols=70 Identities=13% Similarity=0.104 Sum_probs=48.4
Q ss_pred CchhHHHHHHHhhCC-CCcccCHHHHHHHHHHHHH---HHHHHHHHHHHHHHhcCCCccCcccHHHHHhhcCCC
Q 026469 63 MPIANVIRIMRKILP-QHAKISDDAKETIQECVSE---YISFITGEANERCQREQRKTITAEDVLWAMSKLGFD 132 (238)
Q Consensus 63 LPkA~I~RImKeaLp-~~~rISkDAkeaLqecase---FI~~LaseAne~A~~~kRKTItaEDVL~ALe~LGF~ 132 (238)
++...+..|++..+. ....++.++.+.|.+.+.- .+.-+...+...|...++.+|+.+||..++..++++
T Consensus 184 ~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~~~~ 257 (338)
T 3pfi_A 184 YKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEIITEKRANEALNSLGVN 257 (338)
T ss_dssp CCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHTCC
T ss_pred cCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHhCCc
Confidence 345556666655443 2357999999988875322 233444556667878888999999999999987765
No 102
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural genomics, structural genomics CONS SGC; 2.00A {Plasmodium falciparum K1}
Probab=31.87 E-value=73 Score=24.85 Aligned_cols=35 Identities=11% Similarity=0.252 Sum_probs=21.9
Q ss_pred HHHHHhcCCCccCcccHHHHHhhcCCCcchHHHHH
Q 026469 106 NERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTV 140 (238)
Q Consensus 106 ne~A~~~kRKTItaEDVL~ALe~LGF~dyve~Lk~ 140 (238)
....-.++.-+|+.+++..+|+.+|+.--.+.++.
T Consensus 63 F~~~D~d~~G~Is~~El~~~l~~~g~~~~~~~~~~ 97 (197)
T 3pm8_A 63 FIALDVDNSGTLSSQEILDGLKKIGYQKIPPDIHQ 97 (197)
T ss_dssp HHHHCTTCSSEECHHHHHHHHHHHC----CHHHHH
T ss_pred HHHHCCCCCCcCCHHHHHHHHHHhCCCCCHHHHHH
Confidence 34444667778999999999999887533333333
No 103
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=31.46 E-value=33 Score=32.16 Aligned_cols=33 Identities=21% Similarity=0.267 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHhcCCCccCcccHHHHHhhc
Q 026469 97 YISFITGEANERCQREQRKTITAEDVLWAMSKL 129 (238)
Q Consensus 97 FI~~LaseAne~A~~~kRKTItaEDVL~ALe~L 129 (238)
-|..|..+|.-.|.+++|+.|+.+|++.|+++.
T Consensus 390 Di~~l~~eA~~~a~r~~~~~i~~~Df~~Al~~v 422 (434)
T 4b4t_M 390 QLKAVTVEAGMIALRNGQSSVKHEDFVEGISEV 422 (434)
T ss_dssp HHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 467777888889999999999999999998753
No 104
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=31.40 E-value=35 Score=31.89 Aligned_cols=32 Identities=31% Similarity=0.295 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHhcCCCccCcccHHHHHhh
Q 026469 97 YISFITGEANERCQREQRKTITAEDVLWAMSK 128 (238)
Q Consensus 97 FI~~LaseAne~A~~~kRKTItaEDVL~ALe~ 128 (238)
-|.-|..+|...|.+++|..|+.+|+..|+++
T Consensus 357 Di~~l~~eA~~~Air~~~~~vt~~Df~~Al~~ 388 (405)
T 4b4t_J 357 DVKGVCTEAGMYALRERRIHVTQEDFELAVGK 388 (405)
T ss_dssp HHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 46777888989999999999999999999865
No 105
>2f3n_A SH3 and multiple ankyrin repeat domains 3; postsynaptic density, SAM domain, shank, scaffolding protein, structural protein; 2.10A {Rattus norvegicus} SCOP: a.60.1.2 PDB: 2f44_A
Probab=31.37 E-value=25 Score=24.73 Aligned_cols=23 Identities=9% Similarity=-0.016 Sum_probs=19.0
Q ss_pred cCcccHHHHHhhcCCCcchHHHH
Q 026469 117 ITAEDVLWAMSKLGFDDYIEPLT 139 (238)
Q Consensus 117 ItaEDVL~ALe~LGF~dyve~Lk 139 (238)
=+++||..-|+.+||++|++...
T Consensus 5 Ws~~~V~~WL~~lgl~~Y~~~F~ 27 (76)
T 2f3n_A 5 WSKFDVGDWLESIHLGEHRDRFE 27 (76)
T ss_dssp CCHHHHHHHHHHTTCGGGHHHHH
T ss_pred CCHHHHHHHHHHCCCHHHHHHHH
Confidence 36889999999999998886543
No 106
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=31.34 E-value=64 Score=26.38 Aligned_cols=69 Identities=16% Similarity=0.133 Sum_probs=39.5
Q ss_pred CchhHHHHHHHhhC--------------CCCcccCHHHHHHHHHHHHH------------HHHHHHH---H-HHHHHHhc
Q 026469 63 MPIANVIRIMRKIL--------------PQHAKISDDAKETIQECVSE------------YISFITG---E-ANERCQRE 112 (238)
Q Consensus 63 LPkA~I~RImKeaL--------------p~~~rISkDAkeaLqecase------------FI~~Las---e-Ane~A~~~ 112 (238)
+....+.+|++..+ .....+++++.+.|.+.+.. ....|-. . +.+.+..+
T Consensus 202 ~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~ 281 (310)
T 1ofh_A 202 LSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMN 281 (310)
T ss_dssp CCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHSHHHHHHGGGCT
T ss_pred cCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhcccccccCcHHHHHHHHHHHHhhhcCCcccc
Confidence 45566777776311 11247999999999887632 2222211 1 11222223
Q ss_pred CCC-ccCcccHHHHHhhcCC
Q 026469 113 QRK-TITAEDVLWAMSKLGF 131 (238)
Q Consensus 113 kRK-TItaEDVL~ALe~LGF 131 (238)
+++ +|+.+||..|++++..
T Consensus 282 ~~~~~i~~~~v~~~l~~~~~ 301 (310)
T 1ofh_A 282 GQTVNIDAAYVADALGEVVE 301 (310)
T ss_dssp TCEEEECHHHHHHHTCSSSS
T ss_pred CCEEEEeeHHHHHHHHhhhh
Confidence 332 5999999999987643
No 107
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=30.36 E-value=20 Score=28.80 Aligned_cols=33 Identities=21% Similarity=0.298 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHhcCCCccCcccHHHHHhhc
Q 026469 97 YISFITGEANERCQREQRKTITAEDVLWAMSKL 129 (238)
Q Consensus 97 FI~~LaseAne~A~~~kRKTItaEDVL~ALe~L 129 (238)
-|.-|..+|...|..+++++|+.+||..|+++.
T Consensus 217 ~l~~l~~~a~~~a~~~~~~~i~~~d~~~a~~~~ 249 (262)
T 2qz4_A 217 DIANICNEAALHAAREGHTSVHTLNFEYAVERV 249 (262)
T ss_dssp HHHHHHHHHHTC--------CCBCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 455666677777888888999999999888754
No 108
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Probab=30.26 E-value=1.4e+02 Score=20.93 Aligned_cols=40 Identities=15% Similarity=0.144 Sum_probs=27.5
Q ss_pred HHHHHHHhcCCCccCcccHHHHHhh-cCCCcchHHHHHHHH
Q 026469 104 EANERCQREQRKTITAEDVLWAMSK-LGFDDYIEPLTVYLH 143 (238)
Q Consensus 104 eAne~A~~~kRKTItaEDVL~ALe~-LGF~dyve~Lk~~L~ 143 (238)
.+....-.++.-.|+.+++..+|.. +|..-=.+.++..+.
T Consensus 92 ~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~ 132 (153)
T 3ox6_A 92 DAFREFDTNGDGEISTSELREAMRALLGHQVGHRDIEEIIR 132 (153)
T ss_dssp HHHHHHCTTCSSSBCHHHHHHHHHHHHSSCCCHHHHHHHHH
T ss_pred HHHHHhCCCCCCcCcHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 4555666777889999999999998 776533344444443
No 109
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=30.02 E-value=62 Score=22.30 Aligned_cols=35 Identities=14% Similarity=0.159 Sum_probs=25.1
Q ss_pred CCchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHH
Q 026469 62 FMPIANVIRIMRKILPQHAKISDDAKETIQECVSEY 97 (238)
Q Consensus 62 ~LPkA~I~RImKeaLp~~~rISkDAkeaLqecaseF 97 (238)
.+..++|.|++...- ....||.|.++.|.+++.++
T Consensus 11 GVS~sTVSrvLng~~-~~~~vs~et~~rI~~aa~~l 45 (65)
T 1uxc_A 11 GVSRTTASYVINGKA-KQYRVSDKTVEKVMAVVREH 45 (65)
T ss_dssp TSCHHHHHHHHHTCT-TTTTCTTHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHcCCC-CCCCCCHHHHHHHHHHHHHh
Confidence 567889999887532 11378899888888877654
No 110
>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}
Probab=29.37 E-value=16 Score=31.19 Aligned_cols=30 Identities=13% Similarity=0.189 Sum_probs=20.9
Q ss_pred ccHHHHHhhcCCC---cchHHHHHHHHHHHHHH
Q 026469 120 EDVLWAMSKLGFD---DYIEPLTVYLHRYREME 149 (238)
Q Consensus 120 EDVL~ALe~LGF~---dyve~Lk~~L~~yRE~~ 149 (238)
-|.-++.+.|||. ++.+.|++.++.|++..
T Consensus 293 ~d~~k~~~~lG~~p~~~l~e~l~~~~~~~~~~~ 325 (362)
T 3sxp_A 293 AHIEPTILDLDYTPLYDLESGIKDYLPHIHAIF 325 (362)
T ss_dssp BCCHHHHHHHCCCCCCCHHHHHHHHHHHHTCC-
T ss_pred cCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHh
Confidence 3667777889996 56677777777776543
No 111
>2kru_A Light-independent protochlorophyllide reductase subunit B; NESG, PSI, BCHB, bacteriochlorophyll biosynthesis, chlorophyll biosynthesis; NMR {Chlorobaculum tepidum}
Probab=28.84 E-value=37 Score=24.34 Aligned_cols=51 Identities=12% Similarity=0.147 Sum_probs=39.2
Q ss_pred CcccCHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCCccCcccHHHHHhhcC
Q 026469 79 HAKISDDAKETIQECVSEYISFITGEANE-RCQREQRKTITAEDVLWAMSKLG 130 (238)
Q Consensus 79 ~~rISkDAkeaLqecaseFI~~LaseAne-~A~~~kRKTItaEDVL~ALe~LG 130 (238)
.+.++.||...|.+. =-||.=-.....+ +|...|...||.|.+..|-+.++
T Consensus 3 ~l~Wt~EAe~~LkkI-P~FVR~kvrr~tE~~Are~G~~~IT~ev~~~AK~~~~ 54 (63)
T 2kru_A 3 ELSWTAEAEKMLGKV-PFFVRKKVRKNTDNYAREIGEPVVTADVFRKAKEHLG 54 (63)
T ss_dssp CCEECHHHHHHHTTS-CHHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHhC-CHHHHHHHHHHHHHHHHHcCCCeEcHHHHHHHHHHhh
Confidence 467899999999884 3566655554444 89999999999999998876654
No 112
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=28.56 E-value=45 Score=28.21 Aligned_cols=68 Identities=9% Similarity=0.121 Sum_probs=40.4
Q ss_pred CCchhHHHHHHHhhCCC-CcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhhcC
Q 026469 62 FMPIANVIRIMRKILPQ-HAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLG 130 (238)
Q Consensus 62 ~LPkA~I~RImKeaLp~-~~rISkDAkeaLqecaseFI~~LaseAne~A~~~kRKTItaEDVL~ALe~LG 130 (238)
.++...+..+++..+.. +..++.++.+.|.+.+.--+..+.......+. ....+|+.+||..++....
T Consensus 177 ~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G~~r~~~~~l~~~~~-~~~~~i~~~~v~~~~~~~~ 245 (373)
T 1jr3_A 177 ALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA-SGDGQVSTQAVSAMLGTLD 245 (373)
T ss_dssp CCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSSCHHHHHHHHHHHHH-HTTTCBCHHHHHHHTTCCC
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHH-hcCCcccHHHHHHHhCCCC
Confidence 35666777777655432 46789999888877654433333332222222 2346789888887765543
No 113
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=28.53 E-value=49 Score=25.33 Aligned_cols=40 Identities=18% Similarity=0.243 Sum_probs=32.1
Q ss_pred CcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhhcC
Q 026469 79 HAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLG 130 (238)
Q Consensus 79 ~~rISkDAkeaLqecaseFI~~LaseAne~A~~~kRKTItaEDVL~ALe~LG 130 (238)
...+|.+++.+|.+ |...|+..+...|+.+||+.||-+-+
T Consensus 79 ~~~~s~~~~~vl~~------------A~~~A~~~~~~~v~~eHlLlAll~~~ 118 (145)
T 3fes_A 79 DIVLSPRSKQILEL------------SGMFANKLKTNYIGTEHILLAIIQEG 118 (145)
T ss_dssp CCEECHHHHHHHHH------------HHHHHHHTTCSSBCHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHH------------HHHHHHHcCCCcccHHHHHHHHHhCC
Confidence 35688888888865 45778888999999999999996554
No 114
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A; EF-hand like, unknown function; 1.60A {Homo sapiens} SCOP: a.39.1.7
Probab=28.44 E-value=1.4e+02 Score=20.43 Aligned_cols=29 Identities=14% Similarity=0.008 Sum_probs=23.5
Q ss_pred HHHHHHHhcCCCccCcccHHHHHhhcCCC
Q 026469 104 EANERCQREQRKTITAEDVLWAMSKLGFD 132 (238)
Q Consensus 104 eAne~A~~~kRKTItaEDVL~ALe~LGF~ 132 (238)
++....-.++.-.|+.+++..+|+.+|+.
T Consensus 28 ~~F~~~D~d~~G~i~~~el~~~l~~~g~~ 56 (105)
T 1wlz_A 28 QEFENFDTMKTNTISREEFRAICNRRVQI 56 (105)
T ss_dssp HHHHHHCTTCSSCBCHHHHHHHHHHHTCC
T ss_pred HHHHHHCCCCCCcCcHHHHHHHHHHhCCC
Confidence 45556667778899999999999999875
No 115
>3bq7_A Diacylglycerol kinase delta; SAM domain, polymerization domain, alternative splicing, cytoplasm, membrane, metal-binding, phorbol-ester binding; 2.90A {Homo sapiens}
Probab=28.10 E-value=31 Score=24.57 Aligned_cols=24 Identities=21% Similarity=0.245 Sum_probs=20.1
Q ss_pred ccCcccHHHHHhhcCCCcchHHHH
Q 026469 116 TITAEDVLWAMSKLGFDDYIEPLT 139 (238)
Q Consensus 116 TItaEDVL~ALe~LGF~dyve~Lk 139 (238)
.-+++||..-|+.+||++|++...
T Consensus 9 ~Ws~~~V~~WL~~lgl~~Y~~~F~ 32 (81)
T 3bq7_A 9 LWGTEEVAAWLEHLSLCEYKDIFT 32 (81)
T ss_dssp GCCHHHHHHHHHHTTCGGGHHHHH
T ss_pred hCCHHHHHHHHHHCCCHHHHHHHH
Confidence 357899999999999999987654
No 116
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A {Kluyveromyces lactis} PDB: 1lkj_A 2lhh_A 1f54_A 1f55_A
Probab=27.66 E-value=1.6e+02 Score=20.60 Aligned_cols=42 Identities=14% Similarity=0.125 Sum_probs=29.0
Q ss_pred HHHHHHHhcCCCccCcccHHHHHhhcCCCcchHHHHHHHHHH
Q 026469 104 EANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTVYLHRY 145 (238)
Q Consensus 104 eAne~A~~~kRKTItaEDVL~ALe~LGF~dyve~Lk~~L~~y 145 (238)
.+....-.++.-.|+.+++..+|..+|..-=-+.++..+..+
T Consensus 88 ~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 129 (147)
T 4ds7_A 88 EAFKVFDKNGDGLISAAELKHVLTSIGEKLTDAEVDEMLREV 129 (147)
T ss_dssp HHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCeECHHHHHHHHHHcCCCCCHHHHHHHHHHh
Confidence 345555567788999999999999998654344454444443
No 117
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: a.39.1.5
Probab=26.04 E-value=95 Score=19.04 Aligned_cols=35 Identities=6% Similarity=-0.020 Sum_probs=23.0
Q ss_pred HHHHHhcCCCccCcccHHHHHhhcCCCcchHHHHH
Q 026469 106 NERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTV 140 (238)
Q Consensus 106 ne~A~~~kRKTItaEDVL~ALe~LGF~dyve~Lk~ 140 (238)
....-.++.-.|+.+++..+|+.+|..--.+.++.
T Consensus 7 F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~ 41 (67)
T 1tiz_A 7 FEKFDKNKDGKLSLDEFREVALAFSPYFTQEDIVK 41 (67)
T ss_dssp HHHHCTTSSSCEEHHHHHHHHHHTCTTSCHHHHHH
T ss_pred HHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHH
Confidence 34445566778889999999988886533333333
No 118
>2d8c_A Phosphatidylcholine:ceramide cholinephosphotransferase 1; cell-free protein synthesis, protein regulation, lipid metabolism, structural genomics; NMR {Mus musculus} SCOP: a.60.1.2
Probab=25.76 E-value=25 Score=26.52 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=20.1
Q ss_pred ccCcccHHHHHhhcCCCcchHHH
Q 026469 116 TITAEDVLWAMSKLGFDDYIEPL 138 (238)
Q Consensus 116 TItaEDVL~ALe~LGF~dyve~L 138 (238)
.-+.+||..-|+++||.+|++..
T Consensus 19 ~Ws~edV~~WL~~~Gl~~Y~~~F 41 (97)
T 2d8c_A 19 YWSPKKVADWLLENAMPEYCEPL 41 (97)
T ss_dssp SCCTTHHHHHHHHTTCTTTTTTT
T ss_pred hCCHHHHHHHHHHcCCHHHHHHH
Confidence 35889999999999999998765
No 119
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=25.53 E-value=47 Score=26.95 Aligned_cols=58 Identities=22% Similarity=0.208 Sum_probs=35.4
Q ss_pred HHHHHhhCCCCcccCHHH-HHHHHHHHHH----HHHHHHHHHHHHHHhcCCCccCcccHHHHHh
Q 026469 69 IRIMRKILPQHAKISDDA-KETIQECVSE----YISFITGEANERCQREQRKTITAEDVLWAMS 127 (238)
Q Consensus 69 ~RImKeaLp~~~rISkDA-keaLqecase----FI~~LaseAne~A~~~kRKTItaEDVL~ALe 127 (238)
.+|++..+. ...++.|+ ...|.+.+.- -|.-+..+|...|...++.+|+.+|+..|++
T Consensus 192 ~~il~~~~~-~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~~~~I~~~dl~~a~~ 254 (254)
T 1ixz_A 192 EQILRIHAR-GKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAAS 254 (254)
T ss_dssp HHHHHHHHT-TSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHTC
T ss_pred HHHHHHHHc-CCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHhC
Confidence 445554332 34455544 4445444332 2445556777788888889999999998873
No 120
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=25.50 E-value=1.8e+02 Score=28.16 Aligned_cols=67 Identities=10% Similarity=0.122 Sum_probs=39.9
Q ss_pred cCCchhHHHHHHHhhC--CCCcccCHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHhcCCCcc
Q 026469 61 RFMPIANVIRIMRKIL--PQHAKISDDAKETIQECVSEYI---------------------SFITGEANERCQREQRKTI 117 (238)
Q Consensus 61 ~~LPkA~I~RImKeaL--p~~~rISkDAkeaLqecaseFI---------------------~~LaseAne~A~~~kRKTI 117 (238)
..++...+.+.+..+- --...+++++.+.|.+....-= ..|...|...|.-.+|..|
T Consensus 392 ~~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~~V 471 (506)
T 3f8t_A 392 EVPSYTLLRRYLLYAIREHPAPELTEEARKRLEHWYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSDDV 471 (506)
T ss_dssp --CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCSEE
T ss_pred CCCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHHHHHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCcCCC
Confidence 3567777777665442 1135899998888876543321 1233445556666677777
Q ss_pred CcccHHHHHh
Q 026469 118 TAEDVLWAMS 127 (238)
Q Consensus 118 taEDVL~ALe 127 (238)
+.+||..|+.
T Consensus 472 ~~eDV~~Ai~ 481 (506)
T 3f8t_A 472 EPEDVDIAAE 481 (506)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 7777777664
No 121
>3bow_A Calpain-2 catalytic subunit; cysteine protease, inhibitor, cell membrane, hydrolase, MEMB protease, thiol protease, phosphoprotein; 2.40A {Rattus norvegicus} PDB: 3df0_A 1df0_A 1u5i_A 1kfu_L 1kfx_L
Probab=23.53 E-value=3.3e+02 Score=26.53 Aligned_cols=73 Identities=15% Similarity=0.265 Sum_probs=46.1
Q ss_pred ccCCchhHHHHHHHhhCCC-----CcccCHHHHHHHHHH----------HHHHHHHHHH-----HHHHHHHhcCCCccCc
Q 026469 60 DRFMPIANVIRIMRKILPQ-----HAKISDDAKETIQEC----------VSEYISFITG-----EANERCQREQRKTITA 119 (238)
Q Consensus 60 D~~LPkA~I~RImKeaLp~-----~~rISkDAkeaLqec----------aseFI~~Las-----eAne~A~~~kRKTIta 119 (238)
|-.|...-+.++++..+.. ...++.+....|-+. -.||+..+.. ++.+....++.-+|+.
T Consensus 545 dG~Is~~El~~~L~~l~~~~~~~~g~~~s~~~~~~l~~~~D~d~~G~I~f~EF~~l~~~~~~l~~~F~~~D~d~dG~Is~ 624 (714)
T 3bow_A 545 DAEISAFELQTILRRVLAKREDIKSDGFSIETCKIMVDMLDEDGSGKLGLKEFYILWTKIQKYQKIYREIDVDRSGTMNS 624 (714)
T ss_dssp GTSBCHHHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHCCSSCSSBCHHHHHHHHHHHHHHHHHHHHHCTTCCSSEEH
T ss_pred CCcCCHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHHHHHHHHhCCCCCCeECH
Confidence 4456667777777765321 234555544444333 2566666543 4455556677889999
Q ss_pred ccHHHHHhhcCCC
Q 026469 120 EDVLWAMSKLGFD 132 (238)
Q Consensus 120 EDVL~ALe~LGF~ 132 (238)
+++..+|+.+|+.
T Consensus 625 ~El~~~L~~~G~~ 637 (714)
T 3bow_A 625 YEMRKALEEAGFK 637 (714)
T ss_dssp HHHHHHHHHTTEE
T ss_pred HHHHHHHHHcCCC
Confidence 9999999998864
No 122
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=23.48 E-value=54 Score=27.18 Aligned_cols=60 Identities=22% Similarity=0.192 Sum_probs=36.0
Q ss_pred HHHHHHHhhCCCCcccCHHH-HHHHHHHHHH----HHHHHHHHHHHHHHhcCCCccCcccHHHHHh
Q 026469 67 NVIRIMRKILPQHAKISDDA-KETIQECVSE----YISFITGEANERCQREQRKTITAEDVLWAMS 127 (238)
Q Consensus 67 ~I~RImKeaLp~~~rISkDA-keaLqecase----FI~~LaseAne~A~~~kRKTItaEDVL~ALe 127 (238)
...+|++..+. ...++.|+ ...|.+...- -|.-+..+|...|..+++.+|+.+||..|++
T Consensus 214 ~r~~il~~~~~-~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~I~~~dl~~a~~ 278 (278)
T 1iy2_A 214 GREQILRIHAR-GKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAAS 278 (278)
T ss_dssp HHHHHHHHHHT-TSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCCSBCHHHHHHHTC
T ss_pred HHHHHHHHHHc-cCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHhC
Confidence 33445554432 34455544 4444443322 2344556777778888889999999998873
No 123
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation, calcium, metal binding protein; 1.95A {Gallus gallus} SCOP: a.39.1.4 PDB: 2kqy_A
Probab=23.28 E-value=1.8e+02 Score=19.81 Aligned_cols=71 Identities=6% Similarity=0.067 Sum_probs=43.4
Q ss_pred CCchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHH---------HHHHHHHHHhcCCCccCcccHHHHHhhc---
Q 026469 62 FMPIANVIRIMRKILPQHAKISDDAKETIQECVSEYISFI---------TGEANERCQREQRKTITAEDVLWAMSKL--- 129 (238)
Q Consensus 62 ~LPkA~I~RImKeaLp~~~rISkDAkeaLqecaseFI~~L---------aseAne~A~~~kRKTItaEDVL~ALe~L--- 129 (238)
.+...-|.+|++..- .+-.|+-+ +|+..+ ...+....-.++.-.|+.+++..+|..+
T Consensus 6 ~~~~~ei~~~~~~~D-~~g~i~~~----------eF~~~~~~~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~ 74 (109)
T 3fs7_A 6 ILSAKDIESALSSCQ-AADSFNYK----------SFFSTVGLSSKTPDQIKKVFGILDQDKSGFIEEEELQLFLKNFSSS 74 (109)
T ss_dssp TSCHHHHHHHHHHTC-STTCCCHH----------HHHHHHTCTTCCHHHHHHHHHHHSTTCSSSBCHHHHHTTGGGTCTT
T ss_pred cCCHHHHHHHHHhcC-CCCcCcHH----------HHHHHHhcCCCcHHHHHHHHHHHCCCCCCeEeHHHHHHHHHHHhcc
Confidence 356677788887653 34455543 222222 2345556667778899999999999999
Q ss_pred CCCcchHHHHHHHH
Q 026469 130 GFDDYIEPLTVYLH 143 (238)
Q Consensus 130 GF~dyve~Lk~~L~ 143 (238)
|..--.+.++..+.
T Consensus 75 ~~~~~~~~~~~~~~ 88 (109)
T 3fs7_A 75 ARVLTSAETKAFLA 88 (109)
T ss_dssp SCCCCHHHHHHHHH
T ss_pred cccCCHHHHHHHHH
Confidence 55433444444433
No 124
>1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_A
Probab=22.79 E-value=77 Score=27.66 Aligned_cols=38 Identities=13% Similarity=0.212 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCC------------------CccCcccHHHHHhhcCC
Q 026469 94 VSEYISFITGEANERCQREQR------------------KTITAEDVLWAMSKLGF 131 (238)
Q Consensus 94 aseFI~~LaseAne~A~~~kR------------------KTItaEDVL~ALe~LGF 131 (238)
...|-..|+-+-.++|..-.. -.|+.|||+.|++.|.-
T Consensus 88 ~gdfy~eLavqIvEvC~~tr~~nGGli~l~el~~~~~r~~~IS~dDi~rAik~L~~ 143 (233)
T 1u5t_A 88 VNDFYYEVCLKVIEICRQTKDMNGGVISFQELEKVHFRKLNVGLDDLEKSIDMLKS 143 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTSSSCEEHHHHHHTTTTTTTCCHHHHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHHHHHHHHhcCCeeEHHHHHHHHHhhcCCCHHHHHHHHHHhhh
Confidence 478888888888888876532 37899999999887643
No 125
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=22.54 E-value=87 Score=25.60 Aligned_cols=65 Identities=11% Similarity=0.117 Sum_probs=39.8
Q ss_pred CchhHHHHHHHhhCC-CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhhc
Q 026469 63 MPIANVIRIMRKILP-QHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKL 129 (238)
Q Consensus 63 LPkA~I~RImKeaLp-~~~rISkDAkeaLqecaseFI~~LaseAne~A~~~kRKTItaEDVL~ALe~L 129 (238)
++...+.++++..+. .+..++.++.+.|.+.+.--+..+-......+.. ...|+.+||..++...
T Consensus 161 ~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l~~~~~~--~~~i~~~~v~~~~~~~ 226 (319)
T 2chq_A 161 VPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAI--GEVVDADTIYQITATA 226 (319)
T ss_dssp CCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTTCHHHHHHHHHHHHHS--SSCBCHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHCCC
Confidence 456666666665543 2467999999888876543333333333233322 3479999998887644
No 126
>2l09_A ASR4154 protein; proto-chlorophyllide reductase 57 KD subunit superfamily, ST genomics, PSI-2, protein structure initiative; NMR {Nostoc SP}
Probab=22.20 E-value=43 Score=23.92 Aligned_cols=49 Identities=14% Similarity=0.133 Sum_probs=36.2
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCCccCcccHHHHHhhc
Q 026469 80 AKISDDAKETIQECVSEYISFITGEANE-RCQREQRKTITAEDVLWAMSKL 129 (238)
Q Consensus 80 ~rISkDAkeaLqecaseFI~~LaseAne-~A~~~kRKTItaEDVL~ALe~L 129 (238)
+..+.||...|.+. =-||.=-+....+ +|...|...||.|.+..|-+.+
T Consensus 3 l~Wt~EAe~~LkkI-P~FVR~kvrr~tE~~Are~G~~~IT~ev~~~AK~~~ 52 (62)
T 2l09_A 3 LRWTSEAKTKLKNI-PFFARSQAKARIEQLARQAEQDIVTPELVEQARLEF 52 (62)
T ss_dssp CEECHHHHHHHHTS-CGGGHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhC-CHHHHHHHHHHHHHHHHHcCCCeEcHHHHHHHHHHH
Confidence 56788888888873 3455555544444 8999999999999998886544
No 127
>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT calmodulin chimera; calcium sensor, fluorescent protein; HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A* 3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A* 3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A
Probab=22.05 E-value=3e+02 Score=25.80 Aligned_cols=42 Identities=19% Similarity=0.170 Sum_probs=29.0
Q ss_pred HHHHHHHhcCCCccCcccHHHHHhhcCCCcchHHHHHHHHHH
Q 026469 104 EANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTVYLHRY 145 (238)
Q Consensus 104 eAne~A~~~kRKTItaEDVL~ALe~LGF~dyve~Lk~~L~~y 145 (238)
.+....-.++.-+|+.+++..+|+.+|+.-=-+.++..+..|
T Consensus 389 ~aFk~fD~D~dG~Is~eELr~~L~~lG~~ls~eei~~Lf~~~ 430 (450)
T 3sg6_A 389 EAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREA 430 (450)
T ss_dssp HHHHHHCTTCSSEECHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCeEeHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 355556667778999999999999998754444444444433
No 128
>3oq9_A Tumor necrosis factor receptor superfamily member; apoptosis, DISC, FAS; 6.80A {Mus musculus}
Probab=22.02 E-value=90 Score=23.14 Aligned_cols=72 Identities=11% Similarity=0.099 Sum_probs=42.8
Q ss_pred CCchhHHHHHHHhhCCCCcccCHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhhcCCCcchH
Q 026469 62 FMPIANVIRIMRKILPQHAKISDDAKETIQEC-----VSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIE 136 (238)
Q Consensus 62 ~LPkA~I~RImKeaLp~~~rISkDAkeaLqec-----aseFI~~LaseAne~A~~~kRKTItaEDVL~ALe~LGF~dyve 136 (238)
.+|...+.+++++-. +|+--.+.|... .+..+. .........++.=+.++++.+|.++++..-.+
T Consensus 9 ~~~~~~wK~~~R~LG-----lse~~Id~I~~~~~~d~~Eq~~q-----mL~~W~~~~g~~a~~~~Li~~Lr~~~l~~~Ad 78 (86)
T 3oq9_A 9 DMTIQEAKKFARENN-----IKEGKIDEIMHDSIQDTAEQKVQ-----LLLCWYQSHGKSDAYQDLIKGLKKAECRRTLD 78 (86)
T ss_dssp HSCHHHHHHHHHTTT-----SCHHHHHHHHHTCTTCCTTHHHH-----HHHHHHHHSCSSSHHHHHHHHHHHTTCSSHHH
T ss_pred HcCHHHHHHHHHHcC-----CCHhHHHHHHHhCCCChHHHHHH-----HHHHHHHHhCcchHHHHHHHHHHHccchhHHH
Confidence 356677777777643 333333333311 111111 12333333445558899999999999999888
Q ss_pred HHHHHHH
Q 026469 137 PLTVYLH 143 (238)
Q Consensus 137 ~Lk~~L~ 143 (238)
.++..|.
T Consensus 79 ~I~~~l~ 85 (86)
T 3oq9_A 79 KFQDMVQ 85 (86)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 8887664
No 129
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=21.97 E-value=1e+02 Score=26.25 Aligned_cols=67 Identities=12% Similarity=0.051 Sum_probs=39.0
Q ss_pred CchhHHHHHHHhhCC-CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhhc
Q 026469 63 MPIANVIRIMRKILP-QHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKL 129 (238)
Q Consensus 63 LPkA~I~RImKeaLp-~~~rISkDAkeaLqecaseFI~~LaseAne~A~~~kRKTItaEDVL~ALe~L 129 (238)
++...+.+.+++.+. .+..|+.||.+.|.+.+.-=+..+..+-...+.-.+.++|+.+||...+...
T Consensus 142 l~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~gdl~~~~~elekl~l~~~~~~It~e~V~~~~~~~ 209 (343)
T 1jr3_D 142 PEQAQLPRWVAARAKQLNLELDDAANQVLCYCYEGNLLALAQALERLSLLWPDGKLTLPRVEQAVNDA 209 (343)
T ss_dssp CCTTHHHHHHHHHHHHTTCEECHHHHHHHHHSSTTCHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhh
Confidence 455555555554442 3578999999999887553333333333333332334578888877665543
No 130
>2lmt_A Calmodulin-related protein 97A; spermatogenesis, metal binding protein; NMR {Drosophila melanogaster} PDB: 2lmu_A 2lmv_A
Probab=21.60 E-value=2e+02 Score=20.95 Aligned_cols=41 Identities=20% Similarity=0.201 Sum_probs=30.7
Q ss_pred HHHHHHHHhcCCCccCcccHHHHHhhcCCCcchHHHHHHHH
Q 026469 103 GEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTVYLH 143 (238)
Q Consensus 103 seAne~A~~~kRKTItaEDVL~ALe~LGF~dyve~Lk~~L~ 143 (238)
..|....-.++.-+|+.+++..+|..+|..--...++..+.
T Consensus 86 ~~aF~~~D~d~~G~I~~~El~~~l~~~g~~~~~~e~~~l~~ 126 (148)
T 2lmt_A 86 REAFKIFDRDGDGFISPAELRFVMINLGEKVTDEEIDEMIR 126 (148)
T ss_dssp HHHHHHHHSSCSSEECHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred HHHHHHHCCCCcCcCcHHHHHHHHHHcCccccHHHHHHHHH
Confidence 35666777788889999999999999998655555555443
No 131
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=21.60 E-value=30 Score=33.17 Aligned_cols=48 Identities=21% Similarity=0.259 Sum_probs=34.2
Q ss_pred ccCHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHhcCCCccCcccHHHHHhh
Q 026469 81 KISDDAKETIQECVSE------------------YISFITGEANERCQREQRKTITAEDVLWAMSK 128 (238)
Q Consensus 81 rISkDAkeaLqecase------------------FI~~LaseAne~A~~~kRKTItaEDVL~ALe~ 128 (238)
.+++++.+.|.+...+ -+.-|...|...|.-.+|.+|+.+||..|++-
T Consensus 521 ~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai~l 586 (595)
T 3f9v_A 521 KITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMALKAEVTREDAERAINI 586 (595)
T ss_dssp CCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHH
Confidence 6777777777665322 13345556677788889999999999999853
No 132
>1alv_A Calpain, S-camld; calcium binding, calmodulin like, domain of cystein protease; 1.90A {Sus scrofa} SCOP: a.39.1.8 PDB: 1alw_A* 1nx0_A 1nx1_A 1nx2_A 1nx3_A* 1kfu_S 1kfx_S 3bow_B 1u5i_B 1df0_B 3df0_B 1aj5_A 1dvi_A 1np8_A
Probab=21.52 E-value=2.3e+02 Score=20.92 Aligned_cols=76 Identities=9% Similarity=0.040 Sum_probs=42.1
Q ss_pred CCchhHHHHHHHhhCC-CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhhcCCCcchHHHHH
Q 026469 62 FMPIANVIRIMRKILP-QHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTV 140 (238)
Q Consensus 62 ~LPkA~I~RImKeaLp-~~~rISkDAkeaLqecaseFI~~LaseAne~A~~~kRKTItaEDVL~ALe~LGF~dyve~Lk~ 140 (238)
.++...+.++++..-. .+-+|+-+--..+.... .-...+....-.++.-+|+.+++..+|..+|..-=.+.++.
T Consensus 43 ~~~~~~~~~l~~~~D~~~~g~i~~~eF~~~~~~~-----~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~ 117 (173)
T 1alv_A 43 GFGIDTCRSMVAVMDSDTTGKLGFEEFKYLWNNI-----KKWQAIYKQFDVDRSGTIGSSELPGAFEAAGFHLNEHLYSM 117 (173)
T ss_dssp CCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHH-----HHHHHHHHHHCTTCCSSBCTTTHHHHHHHHTCCCCHHHHHH
T ss_pred CCCHHHHHHHHHHHcCCCCCccCHHHHHHHHHHH-----HHHHHHHHHHCCCCCCCCCHHHHHHHHHHcCCCCCHHHHHH
Confidence 4455666666665532 23455543222221111 11234555566677889999999999999987533333433
Q ss_pred HH
Q 026469 141 YL 142 (238)
Q Consensus 141 ~L 142 (238)
.+
T Consensus 118 ~~ 119 (173)
T 1alv_A 118 II 119 (173)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 133
>2gle_A Neurabin-1; SAM domain, scaffold, protein protein interaction, protein binding; NMR {Rattus norvegicus}
Probab=21.34 E-value=36 Score=23.48 Aligned_cols=22 Identities=18% Similarity=0.374 Sum_probs=18.2
Q ss_pred cCcccHHHHHhhcCCCcchHHH
Q 026469 117 ITAEDVLWAMSKLGFDDYIEPL 138 (238)
Q Consensus 117 ItaEDVL~ALe~LGF~dyve~L 138 (238)
=+.+||..-|+.+||++|++..
T Consensus 7 Ws~~~V~~WL~~~gl~~y~~~F 28 (74)
T 2gle_A 7 WSVQQVSHWLVGLSLDQYVSEF 28 (74)
T ss_dssp CCSGGGHHHHHHTTTHHHHHHH
T ss_pred CCHHHHHHHHHHCCCHHHHHHH
Confidence 4689999999999988877654
No 134
>1kw4_A Polyhomeotic; SAM domain, polycomb group, polymer, DNA binding protein; 1.75A {Drosophila melanogaster} SCOP: a.60.1.2 PDB: 1pk1_A
Probab=21.31 E-value=48 Score=24.37 Aligned_cols=25 Identities=24% Similarity=0.478 Sum_probs=20.6
Q ss_pred ccCcccHHHHHhhc-CCCcchHHHHH
Q 026469 116 TITAEDVLWAMSKL-GFDDYIEPLTV 140 (238)
Q Consensus 116 TItaEDVL~ALe~L-GF~dyve~Lk~ 140 (238)
.-+.+||..-|+.+ ||++|++..++
T Consensus 16 ~Ws~edV~~wL~~l~gl~~y~~~F~~ 41 (89)
T 1kw4_A 16 SWSVDDVSNFIRELPGCQDYVDDFIQ 41 (89)
T ss_dssp GCCHHHHHHHHHTSTTCGGGHHHHHH
T ss_pred hCCHHHHHHHHHHCcChHHHHHHHHH
Confidence 35789999999999 99998876553
No 135
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand calcium-binding protein; 1.75A {Gallus gallus} SCOP: a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A 1npq_A 1trf_A
Probab=21.17 E-value=78 Score=21.19 Aligned_cols=35 Identities=17% Similarity=0.158 Sum_probs=24.0
Q ss_pred HHHHHhcCCCccCcccHHHHHhhcCCCcchHHHHH
Q 026469 106 NERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTV 140 (238)
Q Consensus 106 ne~A~~~kRKTItaEDVL~ALe~LGF~dyve~Lk~ 140 (238)
....-.++.-.|+.+++..+|+.+|+.-=...++.
T Consensus 26 F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~ 60 (90)
T 1avs_A 26 FDMFDADGGGDISTKELGTVMRMLGQNPTKEELDA 60 (90)
T ss_dssp HHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHH
Confidence 34445667778999999999999987533333433
No 136
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=21.10 E-value=30 Score=34.06 Aligned_cols=56 Identities=14% Similarity=0.263 Sum_probs=40.5
Q ss_pred HhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccC--cccHHHHHhh
Q 026469 73 RKILPQHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTIT--AEDVLWAMSK 128 (238)
Q Consensus 73 KeaLp~~~rISkDAkeaLqecaseFI~~LaseAne~A~~~kRKTIt--aEDVL~ALe~ 128 (238)
|+++.+.--|-+|.+.+|++||...=.||.......-.+++++++. -.+|..+|..
T Consensus 435 ke~ia~~~ei~~ei~~a~~~~~r~l~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 492 (621)
T 2q2e_B 435 KDAIADIPVIKEEIDLAIKEVARKLKHYLSKQSNLKKRREKEIIITKVLPKLAAKVAH 492 (621)
T ss_dssp SSSBCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHTTSSHHHHTTTTTTT
T ss_pred hhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555544568899999999999999999998777666666666655 3455555553
No 137
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Probab=20.87 E-value=1.3e+02 Score=20.70 Aligned_cols=27 Identities=19% Similarity=0.227 Sum_probs=20.8
Q ss_pred HHHHHhcCCCccCcccHHHHHhhcCCC
Q 026469 106 NERCQREQRKTITAEDVLWAMSKLGFD 132 (238)
Q Consensus 106 ne~A~~~kRKTItaEDVL~ALe~LGF~ 132 (238)
......++.-.|+.+++..+|+.+|..
T Consensus 35 F~~~D~d~~G~I~~~El~~~l~~~g~~ 61 (94)
T 2kz2_A 35 FRVEDKDGNGYISAAELRHVMTNLGEK 61 (94)
T ss_dssp HHHHCTTCCSCBCHHHHHHHHHHHTCC
T ss_pred HHHHCCCCcCcCCHHHHHHHHHHhCCC
Confidence 344456677789999999999998865
No 138
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=20.76 E-value=1.2e+02 Score=27.75 Aligned_cols=46 Identities=20% Similarity=0.284 Sum_probs=35.0
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhhcCCCcchHHH
Q 026469 81 KISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPL 138 (238)
Q Consensus 81 rISkDAkeaLqecaseFI~~LaseAne~A~~~kRKTItaEDVL~ALe~LGF~dyve~L 138 (238)
+++..++.+|.. |.+.|...+...|..+|+|.||=+-+=......|
T Consensus 5 ~ft~~a~~al~~------------A~~~A~~~~h~~v~~eHLLlaLl~~~~~~~~~iL 50 (468)
T 3pxg_A 5 RFTERAQKVLAL------------AQEEALRLGHNNIGTEHILLGLVREGEGIAAKAL 50 (468)
T ss_dssp CBCHHHHHHHHH------------HHHHHHHTTCSEECHHHHHHHHHHSCCSHHHHHH
T ss_pred hhCHHHHHHHHH------------HHHHHHHcCCCcccHHHHHHHHHhccCcHHHHHH
Confidence 688888888855 5578999999999999999999766533333333
No 139
>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein, regulation, complex, calcium, EF- hand, calmodulin, ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis thaliana}
Probab=20.65 E-value=1.2e+02 Score=22.20 Aligned_cols=28 Identities=25% Similarity=0.228 Sum_probs=21.7
Q ss_pred HHHHHHHhcCCCccCcccHHHHHhhcCC
Q 026469 104 EANERCQREQRKTITAEDVLWAMSKLGF 131 (238)
Q Consensus 104 eAne~A~~~kRKTItaEDVL~ALe~LGF 131 (238)
.|....-.++.-.|+.+++..+|..+|+
T Consensus 44 ~~F~~~D~d~~G~I~~~el~~~l~~~g~ 71 (135)
T 3h4s_E 44 KGFSLLADPERHLITAESLRRNSGILGI 71 (135)
T ss_dssp HHHHHHSBTTTTBBCHHHHHHHGGGGTC
T ss_pred HHHHHHCCCCCCcCCHHHHHHHHHHhCC
Confidence 3445556677778999999999998886
No 140
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A
Probab=20.47 E-value=55 Score=28.64 Aligned_cols=35 Identities=17% Similarity=0.303 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHhc-----------------------CCCccCcccHHHHHhhc
Q 026469 95 SEYISFITGEANERCQRE-----------------------QRKTITAEDVLWAMSKL 129 (238)
Q Consensus 95 seFI~~LaseAne~A~~~-----------------------kRKTItaEDVL~ALe~L 129 (238)
..|-..|+.+-.++|..- .+..|+.|||+.|++.|
T Consensus 70 gdfy~eLavqIvEvC~~tr~~nGGli~L~el~~~~~r~Rg~~~~~IS~dDi~rAik~L 127 (234)
T 3cuq_A 70 GDFYYELGVQIIEVCLALKHRNGGLITLEELHQQVLKGRGKFAQDVSQDDLIRAIKKL 127 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSEEEHHHHHHHHHHTTTTCCSSCCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHhcCCeeEHHHHHHHHHHhcCCccCccCHHHHHHHHHHH
Confidence 466666666666666422 11589999999999755
No 141
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=20.30 E-value=88 Score=23.51 Aligned_cols=38 Identities=13% Similarity=0.225 Sum_probs=29.0
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhhc
Q 026469 80 AKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKL 129 (238)
Q Consensus 80 ~rISkDAkeaLqecaseFI~~LaseAne~A~~~kRKTItaEDVL~ALe~L 129 (238)
..+|..+..+|+. |...|...+...|..+|++.||=+-
T Consensus 78 ~~~s~~~~~vL~~------------A~~~A~~~~~~~i~~ehlLlall~~ 115 (150)
T 2y1q_A 78 IHYTPRAKKVIEL------------SMDEARKLGHSYVGTEHILLGLIRE 115 (150)
T ss_dssp CEECHHHHHHHHH------------HHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH------------HHHHHHHcCCCeecHHHHHHHHHhC
Confidence 4567777766654 5677777889999999999998643
No 142
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB: 3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Probab=20.20 E-value=2.5e+02 Score=20.15 Aligned_cols=81 Identities=12% Similarity=0.052 Sum_probs=45.1
Q ss_pred CCchhHHHHHHHhhCCC-CcccCHHH-HHHHHHHHHHH-HHHHHHHHHHHHHhcCCCccCcccHHHHHhhcCCCcchHHH
Q 026469 62 FMPIANVIRIMRKILPQ-HAKISDDA-KETIQECVSEY-ISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPL 138 (238)
Q Consensus 62 ~LPkA~I~RImKeaLp~-~~rISkDA-keaLqecaseF-I~~LaseAne~A~~~kRKTItaEDVL~ALe~LGF~dyve~L 138 (238)
.++...|.+|++..-.+ +-.|+-+- ..++......- ...-...|....-.++.-.|+.+++..+|..+|..-=-+.+
T Consensus 38 ~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~ 117 (143)
T 2obh_A 38 EPKKEEIKKMISEIDKEGTGKMNFGDFLTVMTQKMSEKDTKEEILKAFKLFDDDETGKISFKNLKRVAKELGENLTDEEL 117 (143)
T ss_dssp CCCHHHHHHHHHHHTTTCCSEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHTTCCCCHHHH
T ss_pred CCCHHHHHHHHHHhCCCCCCeeeHHHHHHHHHHHhccccHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHH
Confidence 35566777777765332 33555432 22322211110 01122355666667777899999999999999864333344
Q ss_pred HHHH
Q 026469 139 TVYL 142 (238)
Q Consensus 139 k~~L 142 (238)
+..+
T Consensus 118 ~~~~ 121 (143)
T 2obh_A 118 QEMI 121 (143)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
No 143
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=20.10 E-value=85 Score=23.48 Aligned_cols=35 Identities=17% Similarity=0.166 Sum_probs=26.4
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHh
Q 026469 81 KISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMS 127 (238)
Q Consensus 81 rISkDAkeaLqecaseFI~~LaseAne~A~~~kRKTItaEDVL~ALe 127 (238)
.+|.++..+|+ .|...+...+...|+.+||+.||-
T Consensus 82 ~~s~~~~~vl~------------~A~~~a~~~~~~~i~~ehlLlall 116 (148)
T 1khy_A 82 QPSQDLVRVLN------------LCDKLAQKRGDNFISSELFVLAAL 116 (148)
T ss_dssp CBCHHHHHHHH------------HHHHHHHHHTCSSBCHHHHHHHHH
T ss_pred CcCHHHHHHHH------------HHHHHHHHcCCCeecHHHHHHHHH
Confidence 45566555554 456777777899999999999986
No 144
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=20.05 E-value=3e+02 Score=23.83 Aligned_cols=64 Identities=17% Similarity=0.171 Sum_probs=39.4
Q ss_pred HHHHHHHhhCCC-CcccCHHHHHHHHHHHH----HHHHHHHHHHHHHHHh------------cCCCccCcccHHHHHhhc
Q 026469 67 NVIRIMRKILPQ-HAKISDDAKETIQECVS----EYISFITGEANERCQR------------EQRKTITAEDVLWAMSKL 129 (238)
Q Consensus 67 ~I~RImKeaLp~-~~rISkDAkeaLqecas----eFI~~LaseAne~A~~------------~kRKTItaEDVL~ALe~L 129 (238)
....|++..+.. ...+++++.+.|.+.+. .-|..|..+|...+.+ ...+.|+.+|+..||++.
T Consensus 255 ~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~~~~~~~~~~~~~~~i~~~d~~~al~~~ 334 (357)
T 3d8b_A 255 ARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTADIATITPDQVRPIAYIDFENAFRTV 334 (357)
T ss_dssp HHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCCC----------CCCBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhhhhccccccccCCcCHHHHHHHHHhc
Confidence 334444443321 24578888877777543 3456666666665554 344789999999999865
Q ss_pred C
Q 026469 130 G 130 (238)
Q Consensus 130 G 130 (238)
.
T Consensus 335 ~ 335 (357)
T 3d8b_A 335 R 335 (357)
T ss_dssp G
T ss_pred C
Confidence 4
Done!