Query 026472
Match_columns 238
No_of_seqs 128 out of 1221
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 08:25:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026472.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026472hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00124 adenosine deaminase; 100.0 3.4E-46 7.3E-51 338.9 22.9 203 2-237 30-241 (362)
2 cd01321 ADGF Adenosine deamina 100.0 1.1E-42 2.3E-47 314.8 21.6 187 1-238 18-219 (345)
3 KOG1097 Adenine deaminase/aden 100.0 5.5E-42 1.2E-46 308.2 19.9 206 1-238 40-261 (399)
4 cd00443 ADA_AMPD Adenosine/AMP 100.0 2.1E-41 4.6E-46 302.0 20.8 178 7-238 1-187 (305)
5 PF00962 A_deaminase: Adenosin 100.0 1.4E-40 3.1E-45 298.7 18.8 200 7-238 2-213 (331)
6 COG1816 Add Adenosine deaminas 100.0 4.9E-39 1.1E-43 288.1 19.2 205 2-238 6-218 (345)
7 PRK09358 adenosine deaminase; 100.0 2.1E-38 4.5E-43 286.1 22.5 206 1-238 4-215 (340)
8 TIGR01430 aden_deam adenosine 100.0 1.7E-36 3.7E-41 272.0 23.2 199 7-237 1-204 (324)
9 cd01320 ADA Adenosine deaminas 100.0 1.5E-34 3.2E-39 259.3 22.9 200 6-237 1-205 (325)
10 TIGR01431 adm_rel adenosine de 100.0 2.5E-34 5.3E-39 269.4 19.5 208 2-238 72-345 (479)
11 TIGR01224 hutI imidazoloneprop 99.2 2.7E-09 5.9E-14 97.3 18.0 131 69-235 88-227 (377)
12 cd01296 Imidazolone-5PH Imidaz 98.8 1.5E-07 3.3E-12 85.5 15.2 129 69-235 85-223 (371)
13 PRK09230 cytosine deaminase; P 98.8 3.8E-08 8.3E-13 91.8 10.9 129 67-233 93-223 (426)
14 cd01319 AMPD AMP deaminase (AM 98.5 4E-06 8.7E-11 79.4 15.1 198 4-238 55-346 (496)
15 PLN02768 AMP deaminase 98.3 1.3E-05 2.8E-10 79.0 13.9 197 5-238 379-669 (835)
16 PLN03055 AMP deaminase; Provis 98.3 1.8E-05 3.8E-10 76.3 14.2 197 5-238 146-436 (602)
17 TIGR01429 AMP_deaminase AMP de 98.2 7E-06 1.5E-10 79.2 10.6 129 74-238 275-458 (611)
18 PTZ00310 AMP deaminase; Provis 98.1 8.5E-06 1.8E-10 84.3 8.1 129 74-238 949-1129(1453)
19 cd01292 metallo-dependent_hydr 97.7 0.0011 2.4E-08 56.1 13.9 129 66-230 25-158 (275)
20 PRK09356 imidazolonepropionase 97.7 0.0035 7.5E-08 57.8 17.6 128 69-232 113-249 (406)
21 PRK08393 N-ethylammeline chlor 97.6 0.0012 2.5E-08 61.6 13.6 131 52-229 75-213 (424)
22 cd01298 ATZ_TRZ_like TRZ/ATZ f 97.6 0.0014 3E-08 60.0 13.9 131 53-230 78-219 (411)
23 cd01293 Bact_CD Bacterial cyto 97.4 0.0016 3.4E-08 59.3 10.6 126 68-231 88-215 (398)
24 KOG1096 Adenosine monophosphat 96.6 0.011 2.4E-07 57.4 8.7 98 4-102 314-451 (768)
25 PRK07583 cytosine deaminase-li 95.9 0.13 2.9E-06 48.1 12.2 28 205-232 212-239 (438)
26 cd01313 Met_dep_hydrolase_E Me 95.6 1.8 4E-05 40.2 18.5 126 69-229 84-230 (418)
27 PRK07213 chlorohydrolase; Prov 95.3 0.23 5.1E-06 45.5 11.3 114 69-231 91-205 (375)
28 TIGR02022 hutF formiminoglutam 95.3 1 2.2E-05 42.4 15.8 126 69-229 93-239 (455)
29 PRK06687 chlorohydrolase; Vali 95.1 0.75 1.6E-05 42.6 14.2 28 203-230 194-221 (419)
30 PRK05985 cytosine deaminase; P 95.1 0.24 5.1E-06 45.6 10.6 125 68-231 90-217 (391)
31 PRK06886 hypothetical protein; 95.1 0.57 1.2E-05 42.5 12.8 141 53-232 47-189 (329)
32 PRK06380 metal-dependent hydro 95.1 0.76 1.6E-05 42.5 14.0 39 190-229 172-210 (418)
33 cd01305 archeal_chlorohydrolas 95.0 1.2 2.6E-05 38.5 14.2 24 207-230 127-150 (263)
34 PRK06846 putative deaminase; V 94.9 0.62 1.3E-05 43.2 12.8 53 175-230 177-231 (410)
35 TIGR03314 Se_ssnA putative sel 94.9 0.85 1.8E-05 42.8 13.8 120 69-229 100-228 (441)
36 PRK14085 imidazolonepropionase 94.7 2.9 6.2E-05 38.3 16.6 43 193-235 195-237 (382)
37 PRK09228 guanine deaminase; Pr 94.4 1.3 2.9E-05 41.4 14.0 28 203-230 209-237 (433)
38 PRK07203 putative chlorohydrol 94.3 0.96 2.1E-05 42.3 12.7 27 204-230 204-230 (442)
39 PRK06038 N-ethylammeline chlor 93.9 1.5 3.3E-05 40.9 13.2 27 203-229 188-214 (430)
40 PRK08204 hypothetical protein; 93.7 2.6 5.6E-05 39.3 14.4 37 191-228 188-224 (449)
41 cd01303 GDEase Guanine deamina 93.6 3.9 8.4E-05 38.2 15.3 29 202-230 205-234 (429)
42 PRK12393 amidohydrolase; Provi 93.5 2.7 5.8E-05 39.6 14.3 38 192-229 205-242 (457)
43 PRK15493 5-methylthioadenosine 93.0 4 8.7E-05 38.2 14.4 27 203-229 195-221 (435)
44 TIGR02967 guan_deamin guanine 92.8 3.7 8.1E-05 37.7 13.9 28 203-230 184-212 (401)
45 PRK08203 hydroxydechloroatrazi 92.7 5.5 0.00012 37.3 15.0 42 189-230 197-239 (451)
46 PRK09229 N-formimino-L-glutama 92.4 5.4 0.00012 37.5 14.6 126 69-229 93-239 (456)
47 COG1099 Predicted metal-depend 92.1 2 4.3E-05 37.0 10.0 78 154-232 60-141 (254)
48 cd01312 Met_dep_hydrolase_D Me 91.7 7.8 0.00017 35.6 14.5 27 203-229 161-187 (381)
49 TIGR02090 LEU1_arch isopropylm 91.6 2.8 6E-05 38.5 11.3 121 77-230 72-196 (363)
50 PRK07572 cytosine deaminase; V 91.6 2 4.4E-05 40.0 10.6 43 53-96 76-118 (426)
51 cd07948 DRE_TIM_HCS Saccharomy 90.7 6.3 0.00014 34.5 12.2 118 80-230 75-196 (262)
52 PRK09045 N-ethylammeline chlor 90.1 15 0.00032 34.3 15.0 28 202-229 199-226 (443)
53 PRK08418 chlorohydrolase; Prov 89.1 15 0.00032 34.1 14.0 27 203-229 188-214 (408)
54 COG0402 SsnA Cytosine deaminas 87.7 23 0.0005 32.8 14.4 27 66-92 93-119 (421)
55 cd07939 DRE_TIM_NifV Streptomy 87.6 11 0.00023 32.8 11.4 118 80-230 73-194 (259)
56 PRK11858 aksA trans-homoaconit 87.4 8.7 0.00019 35.4 11.2 118 79-230 78-200 (378)
57 cd03174 DRE_TIM_metallolyase D 84.9 15 0.00032 31.4 10.8 175 15-230 11-202 (265)
58 PRK07228 N-ethylammeline chlor 84.7 33 0.00071 31.9 13.8 27 203-229 197-223 (445)
59 cd07945 DRE_TIM_CMS Leptospira 83.8 25 0.00055 31.0 11.9 116 81-230 79-203 (280)
60 COG1831 Predicted metal-depend 82.7 34 0.00074 30.3 12.4 127 78-232 21-171 (285)
61 cd07941 DRE_TIM_LeuA3 Desulfob 79.6 42 0.00091 29.4 12.4 116 81-230 83-207 (273)
62 PRK05692 hydroxymethylglutaryl 78.4 48 0.001 29.4 11.9 172 17-230 20-211 (287)
63 smart00148 PLCXc Phospholipase 78.1 19 0.00041 28.2 8.2 42 80-121 32-83 (135)
64 TIGR02660 nifV_homocitr homoci 76.8 41 0.00089 30.8 11.3 119 79-230 75-197 (365)
65 PF04909 Amidohydro_2: Amidohy 75.8 11 0.00023 31.9 6.8 54 171-226 82-138 (273)
66 COG3964 Predicted amidohydrola 75.5 11 0.00023 34.2 6.7 55 184-238 148-206 (386)
67 cd07940 DRE_TIM_IPMS 2-isoprop 74.7 47 0.001 28.9 10.7 118 80-230 73-201 (268)
68 cd01297 D-aminoacylase D-amino 74.6 72 0.0016 29.5 13.5 51 174-224 229-280 (415)
69 PLN02746 hydroxymethylglutaryl 74.2 65 0.0014 29.5 11.7 115 82-230 127-253 (347)
70 PRK13209 L-xylulose 5-phosphat 74.1 50 0.0011 28.5 10.7 22 78-99 23-44 (283)
71 PRK09389 (R)-citramalate synth 74.0 58 0.0013 31.2 11.8 116 82-230 79-198 (488)
72 PF00682 HMGL-like: HMGL-like 74.0 30 0.00064 29.2 9.1 175 16-230 7-193 (237)
73 cd07938 DRE_TIM_HMGL 3-hydroxy 73.4 64 0.0014 28.3 12.8 115 82-230 79-205 (274)
74 COG2159 Predicted metal-depend 72.6 12 0.00026 33.3 6.5 44 188-231 125-170 (293)
75 TIGR03278 methan_mark_10 putat 66.7 18 0.0004 33.8 6.6 56 168-223 52-107 (404)
76 TIGR00010 hydrolase, TatD fami 66.2 27 0.00058 29.3 7.1 41 187-227 83-130 (252)
77 TIGR01434 glu_cys_ligase gluta 65.8 10 0.00022 36.5 4.8 37 81-117 310-349 (512)
78 cd01310 TatD_DNAse TatD like p 65.5 25 0.00054 29.4 6.8 47 188-236 84-137 (251)
79 PF00388 PI-PLC-X: Phosphatidy 65.0 18 0.0004 28.3 5.5 41 81-121 31-81 (146)
80 PRK02107 glutamate--cysteine l 64.9 11 0.00024 36.5 4.8 36 81-116 314-352 (523)
81 cd01299 Met_dep_hydrolase_A Me 64.0 22 0.00047 31.6 6.4 59 170-229 117-184 (342)
82 PF13407 Peripla_BP_4: Peripla 63.8 44 0.00094 27.9 8.0 62 156-226 27-89 (257)
83 PRK08195 4-hyroxy-2-oxovalerat 63.5 1.2E+02 0.0025 27.6 12.7 72 156-230 127-201 (337)
84 PF04262 Glu_cys_ligase: Gluta 63.3 7.4 0.00016 36.0 3.2 32 81-112 311-343 (377)
85 TIGR03217 4OH_2_O_val_ald 4-hy 60.9 1.1E+02 0.0023 27.9 10.3 72 156-230 126-200 (333)
86 PRK10076 pyruvate formate lyas 60.6 25 0.00054 29.8 5.8 57 168-225 17-74 (213)
87 PF01261 AP_endonuc_2: Xylose 60.2 87 0.0019 25.0 10.7 107 82-225 1-132 (213)
88 PRK12344 putative alpha-isopro 60.1 1.7E+02 0.0037 28.3 12.0 116 81-230 90-213 (524)
89 cd00137 PI-PLCc Catalytic doma 58.4 94 0.002 27.3 9.3 41 81-121 39-88 (274)
90 smart00481 POLIIIAc DNA polyme 57.9 10 0.00022 25.5 2.4 25 11-38 1-30 (67)
91 COG1242 Predicted Fe-S oxidore 56.7 1.5E+02 0.0032 26.6 11.2 23 203-225 166-188 (312)
92 TIGR00977 LeuA_rel 2-isopropyl 55.9 1.3E+02 0.0028 29.1 10.5 115 82-230 87-210 (526)
93 PRK12928 lipoyl synthase; Prov 55.3 1.5E+02 0.0033 26.3 10.6 70 155-227 203-289 (290)
94 cd07944 DRE_TIM_HOA_like 4-hyd 54.0 1.5E+02 0.0033 25.8 13.0 71 157-230 122-195 (266)
95 TIGR01435 glu_cys_lig_rel glut 53.8 21 0.00045 36.1 4.8 37 81-117 259-298 (737)
96 PRK14042 pyruvate carboxylase 53.2 2.4E+02 0.0052 27.9 15.8 114 75-230 95-209 (596)
97 PF02811 PHP: PHP domain; Int 52.4 10 0.00022 29.9 2.0 26 10-38 1-31 (175)
98 TIGR00857 pyrC_multi dihydroor 52.2 1.9E+02 0.0042 26.6 12.2 67 157-228 102-170 (411)
99 PLN03228 methylthioalkylmalate 51.8 1.2E+02 0.0026 29.3 9.4 93 104-230 199-298 (503)
100 PRK00915 2-isopropylmalate syn 51.2 1.6E+02 0.0034 28.5 10.2 109 87-230 90-208 (513)
101 cd08207 RLP_NonPhot Ribulose b 50.9 1.9E+02 0.0042 27.1 10.4 72 79-186 162-236 (406)
102 TIGR02493 PFLA pyruvate format 48.7 48 0.001 27.8 5.7 57 169-225 45-101 (235)
103 PRK12331 oxaloacetate decarbox 48.7 2.4E+02 0.0053 26.7 14.3 110 77-230 97-209 (448)
104 cd01297 D-aminoacylase D-amino 48.0 45 0.00098 30.9 5.8 59 170-228 161-222 (415)
105 PRK13210 putative L-xylulose 5 47.7 1.8E+02 0.0039 24.9 10.7 22 78-99 18-39 (284)
106 cd07937 DRE_TIM_PC_TC_5S Pyruv 47.7 1.9E+02 0.0042 25.2 13.7 110 77-230 92-204 (275)
107 TIGR01108 oadA oxaloacetate de 46.9 3E+02 0.0064 27.2 14.1 111 76-230 91-204 (582)
108 COG0167 PyrD Dihydroorotate de 46.6 1.9E+02 0.004 26.2 9.3 87 70-195 107-195 (310)
109 COG1879 RbsB ABC-type sugar tr 46.5 1.5E+02 0.0032 25.9 8.7 59 164-229 69-127 (322)
110 cd01307 Met_dep_hydrolase_B Me 45.3 97 0.0021 27.6 7.4 49 187-235 128-180 (338)
111 PRK14041 oxaloacetate decarbox 44.3 2.9E+02 0.0064 26.4 13.6 112 75-230 94-208 (467)
112 PF13918 PLDc_3: PLD-like doma 43.7 31 0.00068 28.5 3.6 20 155-174 131-150 (177)
113 PRK07135 dnaE DNA polymerase I 43.7 18 0.0004 37.6 2.7 25 7-31 1-30 (973)
114 COG0119 LeuA Isopropylmalate/h 43.2 2.9E+02 0.0062 26.0 15.5 124 73-230 73-203 (409)
115 PTZ00310 AMP deaminase; Provis 42.9 14 0.0003 39.8 1.7 28 4-31 202-229 (1453)
116 PRK06740 histidinol-phosphatas 42.6 41 0.00089 30.5 4.5 76 9-93 2-78 (331)
117 TIGR00973 leuA_bact 2-isopropy 42.5 2.4E+02 0.0052 27.1 9.9 92 104-230 107-205 (494)
118 TIGR00856 pyrC_dimer dihydroor 41.9 45 0.00097 30.3 4.7 40 189-228 92-138 (341)
119 PRK14456 ribosomal RNA large s 41.6 2.9E+02 0.0062 25.5 10.3 63 157-223 278-347 (368)
120 PRK09061 D-glutamate deacylase 41.6 62 0.0013 31.1 5.8 58 171-229 164-223 (509)
121 PLN02428 lipoic acid synthase 41.6 2.7E+02 0.0058 25.6 9.6 71 155-228 246-333 (349)
122 PRK06151 N-ethylammeline chlor 41.0 94 0.002 29.5 6.9 28 202-229 218-245 (488)
123 PRK09282 pyruvate carboxylase 40.6 3.7E+02 0.008 26.5 13.8 111 76-230 96-209 (592)
124 cd07943 DRE_TIM_HOA 4-hydroxy- 40.0 2.4E+02 0.0053 24.2 12.6 72 156-230 124-197 (263)
125 TIGR02826 RNR_activ_nrdG3 anae 39.8 1.1E+02 0.0023 24.4 6.0 51 170-226 46-96 (147)
126 COG1856 Uncharacterized homolo 39.5 28 0.00062 30.2 2.8 37 189-225 112-156 (275)
127 TIGR02491 NrdG anaerobic ribon 39.2 1E+02 0.0022 24.4 5.9 55 170-226 46-104 (154)
128 PRK01060 endonuclease IV; Prov 38.9 2E+02 0.0044 24.6 8.3 43 78-121 14-57 (281)
129 PRK12581 oxaloacetate decarbox 37.6 3.8E+02 0.0082 25.7 14.1 111 76-230 105-218 (468)
130 TIGR00542 hxl6Piso_put hexulos 37.1 2.7E+02 0.0058 23.9 10.2 22 78-99 18-39 (279)
131 PF07969 Amidohydro_3: Amidohy 36.8 2E+02 0.0042 26.0 8.2 31 63-93 117-147 (404)
132 COG0613 Predicted metal-depend 36.2 26 0.00055 30.6 2.1 28 8-38 2-32 (258)
133 COG2918 GshA Gamma-glutamylcys 36.0 51 0.0011 31.4 4.1 33 80-112 314-347 (518)
134 COG1856 Uncharacterized homolo 35.2 67 0.0014 27.9 4.3 53 177-229 43-99 (275)
135 PRK14453 chloramphenicol/florf 35.2 3.5E+02 0.0076 24.7 9.8 69 156-224 247-325 (347)
136 cd08627 PI-PLCc_gamma1 Catalyt 35.1 3E+02 0.0065 23.8 8.3 72 80-185 33-114 (229)
137 PRK14466 ribosomal RNA large s 34.9 3.5E+02 0.0077 24.8 9.3 65 159-224 250-320 (345)
138 cd00530 PTE Phosphotriesterase 34.1 44 0.00094 29.0 3.3 23 206-228 137-159 (293)
139 TIGR00510 lipA lipoate synthas 34.0 3.4E+02 0.0074 24.2 9.0 71 155-228 206-293 (302)
140 PRK12394 putative metallo-depe 33.6 1.1E+02 0.0023 27.9 5.9 27 203-229 171-197 (379)
141 TIGR03178 allantoinase allanto 33.4 3.2E+02 0.0069 25.4 9.1 33 6-38 49-84 (443)
142 cd01306 PhnM PhnM is believed 33.3 1.2E+02 0.0026 27.4 6.1 26 204-229 162-187 (325)
143 COG0279 GmhA Phosphoheptose is 33.3 2.8E+02 0.006 22.9 14.2 134 55-230 7-148 (176)
144 PRK13361 molybdenum cofactor b 33.2 1.8E+02 0.004 26.0 7.2 128 19-186 44-183 (329)
145 TIGR01859 fruc_bis_ald_ fructo 33.0 1.7E+02 0.0036 25.9 6.8 69 170-238 24-94 (282)
146 cd06300 PBP1_ABC_sugar_binding 32.9 2.9E+02 0.0062 23.0 9.0 60 157-224 32-91 (272)
147 COG1180 PflA Pyruvate-formate 32.8 1E+02 0.0023 26.8 5.4 44 189-232 83-126 (260)
148 TIGR01858 tag_bisphos_ald clas 32.7 1.6E+02 0.0034 26.2 6.5 68 170-238 24-92 (282)
149 PRK06801 hypothetical protein; 32.4 1.7E+02 0.0037 26.0 6.7 68 170-238 26-94 (286)
150 CHL00040 rbcL ribulose-1,5-bis 31.8 4.7E+02 0.01 25.1 10.5 105 78-224 185-294 (475)
151 TIGR03821 AblA_like_1 lysine-2 31.4 3.9E+02 0.0084 24.0 10.5 63 155-217 231-299 (321)
152 TIGR02494 PFLE_PFLC glycyl-rad 31.0 99 0.0021 27.0 5.0 56 168-224 104-160 (295)
153 PRK15408 autoinducer 2-binding 30.5 3.3E+02 0.0071 24.3 8.4 64 155-227 51-114 (336)
154 PRK05301 pyrroloquinoline quin 30.4 1.5E+02 0.0032 27.0 6.2 52 168-223 44-95 (378)
155 PF07745 Glyco_hydro_53: Glyco 29.8 4.3E+02 0.0094 24.0 12.5 158 17-216 52-226 (332)
156 PRK12738 kbaY tagatose-bisphos 29.7 1.9E+02 0.004 25.8 6.5 68 170-238 26-94 (286)
157 PLN02495 oxidoreductase, actin 29.6 4.6E+02 0.01 24.4 10.3 50 69-122 124-179 (385)
158 PRK06806 fructose-bisphosphate 29.6 2.3E+02 0.0049 25.1 7.0 67 170-238 26-94 (281)
159 PRK11145 pflA pyruvate formate 29.4 88 0.0019 26.5 4.3 57 170-227 51-109 (246)
160 cd01538 PBP1_ABC_xylose_bindin 29.1 3.6E+02 0.0078 22.9 8.2 62 156-227 28-89 (288)
161 PF10901 DUF2690: Protein of u 28.7 40 0.00086 25.3 1.8 15 88-102 28-42 (103)
162 COG4464 CapC Capsular polysacc 28.5 84 0.0018 27.2 3.8 29 10-38 2-35 (254)
163 cd07062 Peptidase_S66_mccF_lik 28.5 4.2E+02 0.0091 23.5 10.9 101 76-226 18-123 (308)
164 PRK09195 gatY tagatose-bisphos 28.3 1.9E+02 0.004 25.8 6.2 68 170-238 26-94 (284)
165 PLN02321 2-isopropylmalate syn 28.3 5.5E+02 0.012 25.7 10.0 92 105-230 201-299 (632)
166 COG0191 Fba Fructose/tagatose 28.0 1.9E+02 0.0041 25.8 6.2 68 170-237 26-94 (286)
167 PRK02471 bifunctional glutamat 27.8 90 0.002 31.7 4.6 61 51-111 235-302 (752)
168 cd06311 PBP1_ABC_sugar_binding 27.8 3.6E+02 0.0078 22.4 9.4 59 158-224 33-91 (274)
169 COG0084 TatD Mg-dependent DNas 27.6 2.5E+02 0.0053 24.6 6.8 42 188-229 87-136 (256)
170 cd08208 RLP_Photo Ribulose bis 27.5 5.3E+02 0.012 24.4 10.6 72 79-186 179-253 (424)
171 PRK08185 hypothetical protein; 27.1 2.2E+02 0.0049 25.2 6.5 67 170-238 21-88 (283)
172 TIGR01290 nifB nitrogenase cof 27.0 2.5E+02 0.0055 26.5 7.3 68 168-237 58-129 (442)
173 cd08206 RuBisCO_large_I_II_III 26.8 4.9E+02 0.011 24.5 9.0 95 52-186 121-226 (414)
174 TIGR00288 conserved hypothetic 26.5 2.3E+02 0.0049 23.0 5.9 60 169-236 88-147 (160)
175 cd00947 TBP_aldolase_IIB Tagat 26.4 2.4E+02 0.0051 25.0 6.5 67 170-238 21-89 (276)
176 cd03322 rpsA The starvation se 26.0 4.7E+02 0.01 23.6 8.7 70 157-226 161-273 (361)
177 TIGR03326 rubisco_III ribulose 25.9 5.5E+02 0.012 24.1 9.2 73 78-186 162-237 (412)
178 KOG4013 Predicted Cu2+ homeost 25.6 2.8E+02 0.0062 23.6 6.4 60 163-226 62-131 (255)
179 PLN02424 ketopantoate hydroxym 25.3 2.1E+02 0.0045 26.2 6.0 50 171-228 111-161 (332)
180 cd08592 PI-PLCc_gamma Catalyti 24.8 4.5E+02 0.0099 22.6 8.4 71 80-184 33-113 (229)
181 PRK12857 fructose-1,6-bisphosp 24.8 2.7E+02 0.0059 24.7 6.6 68 170-238 26-94 (284)
182 PRK12737 gatY tagatose-bisphos 24.5 2.5E+02 0.0055 24.9 6.4 68 170-238 26-94 (284)
183 KOG3968 Atrazine chlorohydrola 24.5 84 0.0018 29.7 3.4 10 7-16 72-82 (439)
184 TIGR03583 EF_0837 probable ami 24.4 3.1E+02 0.0067 24.6 7.2 43 187-230 143-190 (365)
185 PRK09856 fructoselysine 3-epim 24.3 4.4E+02 0.0096 22.3 10.3 21 78-98 15-35 (275)
186 PLN02610 probable methionyl-tR 24.2 82 0.0018 32.2 3.6 86 10-96 30-137 (801)
187 cd01294 DHOase Dihydroorotase 24.2 1E+02 0.0022 27.5 3.9 24 205-228 113-136 (335)
188 cd08210 RLP_RrRLP Ribulose bis 23.7 5.8E+02 0.013 23.5 11.5 73 77-185 142-217 (364)
189 PRK08610 fructose-bisphosphate 23.6 2.9E+02 0.0063 24.6 6.6 69 170-238 26-97 (286)
190 cd08148 RuBisCO_large Ribulose 23.5 5.9E+02 0.013 23.5 9.3 74 77-186 144-220 (366)
191 PRK07315 fructose-bisphosphate 23.5 2.8E+02 0.006 24.7 6.5 68 170-238 26-96 (293)
192 TIGR02109 PQQ_syn_pqqE coenzym 23.1 2.2E+02 0.0048 25.5 5.9 52 169-224 36-87 (358)
193 cd08209 RLP_DK-MTP-1-P-enolase 23.0 6.2E+02 0.014 23.6 10.3 94 53-186 114-217 (391)
194 PRK05451 dihydroorotase; Provi 23.0 1.2E+02 0.0027 27.3 4.3 25 204-228 117-141 (345)
195 PF01026 TatD_DNase: TatD rela 22.4 1.8E+02 0.0038 24.9 4.9 23 205-227 111-133 (255)
196 TIGR02495 NrdG2 anaerobic ribo 22.2 2.6E+02 0.0057 22.4 5.7 50 170-224 47-96 (191)
197 cd00453 FTBP_aldolase_II Fruct 22.0 2.7E+02 0.0059 25.5 6.1 69 170-238 21-107 (340)
198 cd01317 DHOase_IIa Dihydroorot 21.7 3.8E+02 0.0083 24.2 7.3 39 188-228 104-142 (374)
199 PLN02599 dihydroorotase 21.5 1.3E+02 0.0029 27.6 4.2 42 188-229 111-160 (364)
200 cd03330 Macro_2 Macro domain, 21.3 3E+02 0.0066 20.8 5.6 48 70-120 84-132 (133)
201 PRK05672 dnaE2 error-prone DNA 21.3 66 0.0014 34.0 2.3 24 9-32 5-33 (1046)
202 TIGR00433 bioB biotin syntheta 21.2 5.3E+02 0.012 22.2 7.8 77 79-191 123-205 (296)
203 PRK05265 pyridoxine 5'-phospha 21.2 2.4E+02 0.0052 24.5 5.4 45 176-225 76-133 (239)
204 COG1964 Predicted Fe-S oxidore 21.2 2.5E+02 0.0053 26.9 5.8 49 170-219 91-139 (475)
205 PRK02261 methylaspartate mutas 21.1 4E+02 0.0087 20.7 7.5 62 164-227 60-121 (137)
206 COG1228 HutI Imidazolonepropio 21.1 1.1E+02 0.0024 28.6 3.5 35 202-236 217-251 (406)
207 cd08619 PI-PLCXDc_plant Cataly 21.1 2.2E+02 0.0048 25.4 5.3 19 83-101 63-81 (285)
208 PRK04208 rbcL ribulose bisopho 21.1 7.4E+02 0.016 23.8 9.8 70 80-185 180-253 (468)
209 cd03319 L-Ala-DL-Glu_epimerase 20.8 5.8E+02 0.013 22.4 11.9 68 159-237 177-246 (316)
210 cd00452 KDPG_aldolase KDPG and 20.7 4.6E+02 0.01 21.2 9.1 23 76-98 16-38 (190)
211 TIGR03332 salvage_mtnW 2,3-dik 20.6 7E+02 0.015 23.4 8.7 94 52-185 128-231 (407)
212 PRK07709 fructose-bisphosphate 20.0 4.5E+02 0.0098 23.3 7.1 69 170-238 26-97 (285)
No 1
>PTZ00124 adenosine deaminase; Provisional
Probab=100.00 E-value=3.4e-46 Score=338.91 Aligned_cols=203 Identities=22% Similarity=0.275 Sum_probs=177.3
Q ss_pred hhhhcCChhhhccccCCCCCHHHHHHHHHHhccCCCCCchhhhHHH-----hcCCCCHHHHHHHhHHHHhhcCChHHHHH
Q 026472 2 EWFASMPKVELHAHLNGSIRDSTLLELARVLGEKGVIVFSDVEHVI-----MKSDRSLHEVFKLFDLIHVLTTDHATVTR 76 (238)
Q Consensus 2 ~~~~~lPK~eLH~HL~Gsi~~~tl~~la~~~~~~~~~~~~~~~~~~-----~~~~~~l~~f~~~f~~~~~l~~~~~~~~~ 76 (238)
+|+++|||+|||+||+||++|+|+++||++ +|+.+..+.+.+. ...+.+|.+||+.|..+..++++++++++
T Consensus 30 ~~~~~lPKvELH~HLdGsi~~~tl~~La~~---~~~~~~~~~~~l~~~~~~~~~~~~L~~fl~~f~~~~~vl~t~~dl~r 106 (362)
T PTZ00124 30 KIWKRIPKCELHCHLDLCFSVDFFLSCIRK---YNLQPNLSDEEILDYYLFAKGGKSLGEFVEKAIRVADIFNDYEVIED 106 (362)
T ss_pred HHHhcCCceeEeecccCCCCHHHHHHHHHH---cCCCCCCCHHHHHHHHhcccCCCCHHHHHHHHHHHHHHhCCHHHHHH
Confidence 589999999999999999999999999985 6665433444332 13468999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCeEEEEeecCCCC-ccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCC
Q 026472 77 ITQEVVEDFASENIVYLELRTTPKRN-ESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRG 155 (238)
Q Consensus 77 ~~~~~~~~~a~dgV~Y~Elr~~P~~~-~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (238)
+++++++++++|||+|+|+||+|..+ ...|++.+++++++.+|++++++ ..+
T Consensus 107 ~a~e~~~d~~~dgV~Y~Eir~~P~~~~~~~gl~~~~vv~av~~g~~~a~~---------------------------~~~ 159 (362)
T PTZ00124 107 LAKHAVFNKYKEGVVLMEFRYSPTFVAFKHNLDIDLIHQAIVKGIKEAVE---------------------------LLD 159 (362)
T ss_pred HHHHHHHHHHHcCCEEEEEEcCchhhhcCCCCCHHHHHHHHHHHHHHHHh---------------------------ccC
Confidence 99999999999999999999999754 45799999999999999998753 125
Q ss_pred CCcEEEEEEEEeCCCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCCCcccHHHHHHHHHHcCCCeeEecCCCCChh---
Q 026472 156 KKIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEVHMSF--- 232 (238)
Q Consensus 156 ~~i~vrlI~~~~R~~~~e~~~~~~~la~~~~~~~vvG~dL~G~E~~~~~~~f~~~f~~ar~~gl~~t~HAGE~~~~~--- 232 (238)
+||.+|+|+|++|+.+++.+.+.+++|.++++. ||||||+|+|.. +..|.++|+.||+.|+++|+||||+++|.
T Consensus 160 ~gI~~~lI~~~~R~~~~e~a~e~~~~a~~~~~~-vvGiDLaG~E~~--~~~f~~~f~~Ar~~Gl~~t~HaGE~~~~~~~~ 236 (362)
T PTZ00124 160 HKIEVGLLCIGDTGHDAAPIKESADFCLKHKAD-FVGFDHAGHEVD--LKPFKDIFDYVREAGVNLTVHAGEDVTLPNLN 236 (362)
T ss_pred CCceEeEEEEecCCCCHHHHHHHHHHHHhccCC-eEEEeccCCCCC--cHHHHHHHHHHHHCCCCEEEEeCCCCCCCcch
Confidence 799999999999999999999999999998775 999999999985 36799999999999999999999986544
Q ss_pred HHHhh
Q 026472 233 ECLLL 237 (238)
Q Consensus 233 ~i~~~ 237 (238)
+++++
T Consensus 237 ~v~~a 241 (362)
T PTZ00124 237 TLYSA 241 (362)
T ss_pred hHHHH
Confidence 55554
No 2
>cd01321 ADGF Adenosine deaminase-related growth factors (ADGF), a novel family of secreted growth-factors with sequence similarty to adenosine deaminase.
Probab=100.00 E-value=1.1e-42 Score=314.82 Aligned_cols=187 Identities=20% Similarity=0.269 Sum_probs=168.5
Q ss_pred ChhhhcCCh-hhhccccCCCCCHHHHHHHHHHhccCCCCCchhhhHHHhcCCCCHHHHHHHhHHHHhhcCChHHHHHHHH
Q 026472 1 MEWFASMPK-VELHAHLNGSIRDSTLLELARVLGEKGVIVFSDVEHVIMKSDRSLHEVFKLFDLIHVLTTDHATVTRITQ 79 (238)
Q Consensus 1 ~~~~~~lPK-~eLH~HL~Gsi~~~tl~~la~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~f~~~~~l~~~~~~~~~~~~ 79 (238)
++|+++||| +|||+||+||++++|+++||++ +|++.|..+..+++++++++++++
T Consensus 18 ~~~~~~lPK~~eLH~Hl~Gsi~~~tl~~la~~------------------------~fl~~f~~~~~~l~~~~~~~~~~~ 73 (345)
T cd01321 18 FKIIQKMPKGALLHVHDTAMVSSDWLIKNATY------------------------RFEQIFDIIDGLLTYLPIFRDYYR 73 (345)
T ss_pred HHHHHhCCChHhhccCccccCCHHHHHHHHHH------------------------HHHHHHHHHHHHhcCHHHHHHHHH
Confidence 368999999 8999999999999999999972 799999999999999999999999
Q ss_pred HHHHHHHhcCCeEEEEeecCCC---CccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCC
Q 026472 80 EVVEDFASENIVYLELRTTPKR---NESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGK 156 (238)
Q Consensus 80 ~~~~~~a~dgV~Y~Elr~~P~~---~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (238)
++++++++|||+|+|+|++|.. +..+|++.+++++++.++++.+.+. .++
T Consensus 74 ~~~~d~~~dgV~Y~Eir~~P~~~~~~~~~g~~~~~v~~av~~~~~~~~~~--------------------------~~~- 126 (345)
T cd01321 74 RLLEELYEDNVQYVELRSSFSPLYDLDGREYDYEETVQLLEEVVEKFKKT--------------------------HPD- 126 (345)
T ss_pred HHHHHHHHcCCEEEEEeecchHHHHccCCCCCHHHHHHHHHHHHHHHHHh--------------------------CCC-
Confidence 9999999999999999999964 3357899999999999999887531 233
Q ss_pred CcEEEEEEEEeCCCCHHHHHHHHHHHHhcC---CCcEEEEeccCCCC-CCCcccHHHHHHHHHHcC--CCeeEecCCCCC
Q 026472 157 KIYVRLLLSIDRRETTEAAMETVKLALEMR---DLGVVGIDLSGNPT-KGEWTTFLPALKFAREQG--LQITLHCGEVHM 230 (238)
Q Consensus 157 ~i~vrlI~~~~R~~~~e~~~~~~~la~~~~---~~~vvG~dL~G~E~-~~~~~~f~~~f~~ar~~g--l~~t~HAGE~~~ 230 (238)
||.+|+|+|++|+.+++.+.+++++|.+++ ++.||||||+|+|. +.|+..|.++|+.||+.| +++|+||||+++
T Consensus 127 ~i~v~lI~~~~R~~~~e~~~e~~~~a~~~~~~~~~~VvGidL~G~E~~~~~~~~f~~~f~~ar~~g~~l~~t~HAGE~~~ 206 (345)
T cd01321 127 FIGLKIIYATLRNFNDSEIKESMEQCLNLKKKFPDFIAGFDLVGQEDAGRPLLDFLPQLLWFPKQCAEIPFFFHAGETNG 206 (345)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHHHHHHhCCCeEEEEecCCCccCCCCHHHHHHHHHHHHHhCCCCceEeecCCCcC
Confidence 899999999999999999999999999873 44699999999995 678899999999999999 999999999985
Q ss_pred -----hhHHHhhC
Q 026472 231 -----SFECLLLL 238 (238)
Q Consensus 231 -----~~~i~~~~ 238 (238)
+++|+++|
T Consensus 207 ~~~~~~~~v~~al 219 (345)
T cd01321 207 DGTETDENLVDAL 219 (345)
T ss_pred CCCCChhHHHHHH
Confidence 67999874
No 3
>KOG1097 consensus Adenine deaminase/adenosine deaminase [Nucleotide transport and metabolism]
Probab=100.00 E-value=5.5e-42 Score=308.17 Aligned_cols=206 Identities=31% Similarity=0.449 Sum_probs=181.0
Q ss_pred ChhhhcC-ChhhhccccCCCCCHHHHHHHHHHhccCCCCCc-----hhhhHHHhc-CC-CCHHHHHH-HhHHHHhhcCCh
Q 026472 1 MEWFASM-PKVELHAHLNGSIRDSTLLELARVLGEKGVIVF-----SDVEHVIMK-SD-RSLHEVFK-LFDLIHVLTTDH 71 (238)
Q Consensus 1 ~~~~~~l-PK~eLH~HL~Gsi~~~tl~~la~~~~~~~~~~~-----~~~~~~~~~-~~-~~l~~f~~-~f~~~~~l~~~~ 71 (238)
++||+.| ||+|||+||+||++++++++|+++ +|.+.. .+++.++.+ .. ..+.+|++ .|..+..++.++
T Consensus 40 ~~~l~~l~pk~eLHaHl~Gsls~~~l~~L~~r---~~~~~p~~~~~~~~~~~l~~~~~~~~l~~f~~~~f~~l~~ll~~~ 116 (399)
T KOG1097|consen 40 FNFLQKLPPKVELHAHLTGSLSPDLLLDLTYR---FGIPLPKARTAEELEKVLERYKPLYPLADFLDNIFYLLHGLLIYA 116 (399)
T ss_pred HHHHHhCCCCeEEEeeccccccHHHHHHHHHh---cCCCCcccccHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhH
Confidence 3689999 889999999999999999999996 565432 344444433 22 25999999 888999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEe-ecCCCCccCC-CCHHHHHHHHHHHHHhhhhcccccccccccccccccccccccc
Q 026472 72 ATVTRITQEVVEDFASENIVYLELR-TTPKRNESIG-MSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDA 149 (238)
Q Consensus 72 ~~~~~~~~~~~~~~a~dgV~Y~Elr-~~P~~~~~~~-~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (238)
+++++++|++++++++|||+|+|+| +.|+.+..+| +|.++++..+.+++++++
T Consensus 117 ~~~~~~~y~~~eef~~dgVvY~E~Rt~~p~l~~~~G~~t~e~~v~~~~~~~e~~~------------------------- 171 (399)
T KOG1097|consen 117 PAFRDYAYEALEEFAEDGVVYLEVRTYPPQLYTADGDITPEDVVAIVIAALEKAK------------------------- 171 (399)
T ss_pred HHHHHHHHHHHHHHHHcCceEEEEEccCchhhhcCCCCCHHHHHHHHHHHHHHHH-------------------------
Confidence 9999999999999999999999999 7788888878 999999999999999986
Q ss_pred ccCCCCCCcEEEEEEEEeCCCCHHHHHHHHHHHHh---cCCCcEEEEeccCCC-CCCCcccHHHHHHHHHHcCCCeeEec
Q 026472 150 CNGTRGKKIYVRLLLSIDRRETTEAAMETVKLALE---MRDLGVVGIDLSGNP-TKGEWTTFLPALKFAREQGLQITLHC 225 (238)
Q Consensus 150 ~~~~~~~~i~vrlI~~~~R~~~~e~~~~~~~la~~---~~~~~vvG~dL~G~E-~~~~~~~f~~~f~~ar~~gl~~t~HA 225 (238)
+++||.+|+|+|++|+.+++.+.+.+..+.+ ..+..||||||+|+| .++|+.+|.++++.+++.||++|+||
T Consensus 172 ----~~fpI~sklI~~~~R~~~~e~~~e~v~~~~~~~~~~~~~VvGidL~G~e~~~~p~~~f~~vl~~~~~~gi~~t~Ha 247 (399)
T KOG1097|consen 172 ----RDFPIKSKLIMCCIRHMPPEVAEETVSEAKELNKLFPNFVVGIDLVGQEDLGGPLSLFLEVLAKAPAKGIHLTFHA 247 (399)
T ss_pred ----HhCCCcceEEEeeccCCChHHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCCCChhhhHHHHHhhhhcCCcEEEEc
Confidence 4678999999999999999999999998877 346789999999999 56789999999999999999999999
Q ss_pred CCC-CChhHHHhhC
Q 026472 226 GEV-HMSFECLLLL 238 (238)
Q Consensus 226 GE~-~~~~~i~~~~ 238 (238)
||+ +|++.|+++|
T Consensus 248 GE~~~~~~~v~~~L 261 (399)
T KOG1097|consen 248 GETNGGASVVKNAL 261 (399)
T ss_pred cccCCChHHHHHHH
Confidence 999 5888888765
No 4
>cd00443 ADA_AMPD Adenosine/AMP deaminase. Adenosine deaminases (ADAs) are present in pro- and eukaryotic organisms and catalyze the zinc dependent irreversible deamination of adenosine nucleosides to inosine nucleosides and ammonia. The eukaryotic AMP deaminase catalyzes a similar reaction leading to the hydrolytic removal of an amino group at the 6 position of the adenine nucleotide ring, a branch point in the adenylate catabolic pathway.
Probab=100.00 E-value=2.1e-41 Score=301.97 Aligned_cols=178 Identities=46% Similarity=0.667 Sum_probs=166.5
Q ss_pred CChhhhccccCCCCCHHHHHHHHHHhccCCCCCchhhhHHHhcCCCCHHHHHHHhHHHHhhcCChHHHHHHHHHHHHHHH
Q 026472 7 MPKVELHAHLNGSIRDSTLLELARVLGEKGVIVFSDVEHVIMKSDRSLHEVFKLFDLIHVLTTDHATVTRITQEVVEDFA 86 (238)
Q Consensus 7 lPK~eLH~HL~Gsi~~~tl~~la~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~f~~~~~l~~~~~~~~~~~~~~~~~~a 86 (238)
|||+|||+||+||++++|+++|+++ +|++.|..+..++++++++++++++++++++
T Consensus 1 lPK~eLH~Hl~Gsi~~~~l~~l~~~------------------------~f~~~f~~~~~~l~~~~~l~~~~~~~~~~~~ 56 (305)
T cd00443 1 LPKVELHAHLSGSISPETLLELIKK------------------------EFFEKFLLVHNLLQKGEALARALKEVIEEFA 56 (305)
T ss_pred CCceeEEecCcCCCCHHHHHHHHHH------------------------HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999982 7999999999999999999999999999999
Q ss_pred hcCCeEEEEeecCCCCccC-CCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCCC-cEEEEEE
Q 026472 87 SENIVYLELRTTPKRNESI-GMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKK-IYVRLLL 164 (238)
Q Consensus 87 ~dgV~Y~Elr~~P~~~~~~-~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~vrlI~ 164 (238)
+|||+|+|+|++|..+... +++.+++++++.++++++++ .++ |++|+|+
T Consensus 57 ~d~V~Y~E~r~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~I~~~lI~ 107 (305)
T cd00443 57 EDNVQYLELRTTPRLLETEKGLTKEQYWLLVIEGISEAKQ-----------------------------WFPPIKVRLIL 107 (305)
T ss_pred HcCCEEEEEEcchhhcCcccCCCHHHHHHHHHHHHHHHHH-----------------------------HcCCeeEeEEE
Confidence 9999999999999877666 89999999999999998753 345 9999999
Q ss_pred EEeCCCCHH----HHHHHHHHHHhcCCCcEEEEeccCCCCCC--CcccHHHHHHHHHHcC-CCeeEecCCCCChhHHHhh
Q 026472 165 SIDRRETTE----AAMETVKLALEMRDLGVVGIDLSGNPTKG--EWTTFLPALKFAREQG-LQITLHCGEVHMSFECLLL 237 (238)
Q Consensus 165 ~~~R~~~~e----~~~~~~~la~~~~~~~vvG~dL~G~E~~~--~~~~f~~~f~~ar~~g-l~~t~HAGE~~~~~~i~~~ 237 (238)
|++|+.+++ .+.+.++++..+++ .||||||+|+|..+ |+..|.++|+.||+.| +++|+||||+++|++|+++
T Consensus 108 ~~~R~~~~~~~~~~~~~~~~l~~~~~~-~vvG~Dl~g~E~~~~~~~~~f~~~~~~ar~~g~l~~t~HaGE~~~~~~v~~~ 186 (305)
T cd00443 108 SVDRRGPYVQNYLVASEILELAKFLSN-YVVGIDLVGDESKGENPLRDFYSYYEYARRLGLLGLTLHCGETGNREELLQA 186 (305)
T ss_pred EEeCCCChhhhhhhHHHHHHHHHHhcC-CEEEEEcCCCCCCCCCCHHHHHHHHHHHHHcCCcceEEeecCCCChHHHHHH
Confidence 999999999 99999999998866 59999999999998 8999999999999999 9999999999999999886
Q ss_pred C
Q 026472 238 L 238 (238)
Q Consensus 238 ~ 238 (238)
+
T Consensus 187 ~ 187 (305)
T cd00443 187 L 187 (305)
T ss_pred H
Confidence 4
No 5
>PF00962 A_deaminase: Adenosine/AMP deaminase immunodeficiency disease (SCID); InterPro: IPR001365 Adenosine deaminase (3.5.4.4 from EC) catalyzes the hydrolytic deamination of adenosine into inosine and AMP deaminase (3.5.4.6 from EC) catalyzes the hydrolytic deamination of AMP into IMP. It has been shown [] that these two enzymes share three regions of sequence similarities; these regions are centred on residues which are proposed to play an important role in the catalytic mechanism of these two enzymes.; GO: 0019239 deaminase activity, 0009168 purine ribonucleoside monophosphate biosynthetic process; PDB: 3LGG_B 3LGD_B 2AMX_B 3EWD_A 2QVN_A 2PGF_A 2PGR_A 3EWC_A 1W1I_G 1O5R_A ....
Probab=100.00 E-value=1.4e-40 Score=298.67 Aligned_cols=200 Identities=40% Similarity=0.576 Sum_probs=175.5
Q ss_pred CChhhhccccCCCCCHHHHHHHHHHhccCCCC-Cch-hhh----HH-HhcCCCCHHHHHHHhHHHHhhcC---ChHHHHH
Q 026472 7 MPKVELHAHLNGSIRDSTLLELARVLGEKGVI-VFS-DVE----HV-IMKSDRSLHEVFKLFDLIHVLTT---DHATVTR 76 (238)
Q Consensus 7 lPK~eLH~HL~Gsi~~~tl~~la~~~~~~~~~-~~~-~~~----~~-~~~~~~~l~~f~~~f~~~~~l~~---~~~~~~~ 76 (238)
+||+|||+||+||++++|+++++++ +++. ++. ..+ .. ......+|.+|++.|..+..+++ +++++++
T Consensus 2 ~pK~eLH~HL~Gsi~~~~l~ela~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~ 78 (331)
T PF00962_consen 2 LPKAELHIHLDGSISPETLLELAKK---NNICELPADTDEELEKHLTRPENFRSLNEFLELFDIISSVLQADRTPEDLRR 78 (331)
T ss_dssp S-EEEEEEEGGGSS-HHHHHHHHHH---CTCC-TTSCSSHHHHHHHHCTSSCSSHHHHHHHHHHHHHHHTCSTSHHHHHH
T ss_pred CCEEEeeeCCccCCCHHHHHHHHHh---CCCCccccccchhhhhHHhhhhhcccHHHHHHHHHHhhhhhhhcccHHHHHH
Confidence 7999999999999999999999996 5543 111 111 11 23457899999999999999999 9999999
Q ss_pred HHHHHHHHHHhcCCeEEEEeecCCCCccCC--CCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCC
Q 026472 77 ITQEVVEDFASENIVYLELRTTPKRNESIG--MSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTR 154 (238)
Q Consensus 77 ~~~~~~~~~a~dgV~Y~Elr~~P~~~~~~~--~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (238)
+++++++++++|||+|+|+|++|......+ ++.+++++++.++++++++
T Consensus 79 ~~~~~l~~~~~dnV~YlElr~~P~~~~~~~~~~~~~~~~~~i~~~~~~a~~----------------------------- 129 (331)
T PF00962_consen 79 YAYEVLEDFAEDNVVYLELRFSPQFHAQLGGNLSFDEVVEAIIEGIDRAEK----------------------------- 129 (331)
T ss_dssp HHHHHHHHHHHTTEEEEEEEESHHHHHTTTCSSTHHHHHHHHHHHHHHHHH-----------------------------
T ss_pred HHHHHHHHHHHcCCeEEEEEeccccccccCCCCCHHHHHHHHHhhhhhccc-----------------------------
Confidence 999999999999999999999998765544 8999999999999999863
Q ss_pred CCCcEEEEEEEEeCCCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCCCcccHHHHHHHHHHcCCCeeEecCCCCChhHH
Q 026472 155 GKKIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEVHMSFEC 234 (238)
Q Consensus 155 ~~~i~vrlI~~~~R~~~~e~~~~~~~la~~~~~~~vvG~dL~G~E~~~~~~~f~~~f~~ar~~gl~~t~HAGE~~~~~~i 234 (238)
++++++|+|++++|+.+.+++.+.++++.++++..||||||+|+|..+++..|.++|+.|++.|+++|+||||+++++++
T Consensus 130 ~~~i~~~li~~~~R~~~~~~~~~~~~~~~~~~~~~vvG~dl~g~E~~~~~~~~~~~~~~a~~~gl~~t~HaGE~~~~~~~ 209 (331)
T PF00962_consen 130 EFGIKVRLIISVLRHFPDEWAEEIVELASKYPDKGVVGFDLAGDEDGGPPLKFAPAFRKAREAGLKLTVHAGETGGPEHI 209 (331)
T ss_dssp HHTTEEEEEEEEETTSTHHHHHHHHHHHHHTTTTTEEEEEEESSTTSTTGGGHHHHHHHHHHTT-EEEEEESSSSTHHHH
T ss_pred cccccccccccccccchHHHHHHHHHHHhhcccceEEEEEecCCcccCchHHHHHHHhhhcccceeecceecccCCcccc
Confidence 45799999999999999999999999999999889999999999999999999999999999999999999999999999
Q ss_pred HhhC
Q 026472 235 LLLL 238 (238)
Q Consensus 235 ~~~~ 238 (238)
++++
T Consensus 210 ~~ai 213 (331)
T PF00962_consen 210 RDAI 213 (331)
T ss_dssp HHHH
T ss_pred cchh
Confidence 9864
No 6
>COG1816 Add Adenosine deaminase [Nucleotide transport and metabolism]
Probab=100.00 E-value=4.9e-39 Score=288.08 Aligned_cols=205 Identities=30% Similarity=0.430 Sum_probs=187.1
Q ss_pred hhhhcCChhhhccccCCCCCHHHHHHHHHHhccCCCCCc-h-----hhhHHHh--cCCCCHHHHHHHhHHHHhhcCChHH
Q 026472 2 EWFASMPKVELHAHLNGSIRDSTLLELARVLGEKGVIVF-S-----DVEHVIM--KSDRSLHEVFKLFDLIHVLTTDHAT 73 (238)
Q Consensus 2 ~~~~~lPK~eLH~HL~Gsi~~~tl~~la~~~~~~~~~~~-~-----~~~~~~~--~~~~~l~~f~~~f~~~~~l~~~~~~ 73 (238)
+++..+||+|||+||+|+++|+++++++++ +|+... . .++.+.. ..+.++++|++.|.....+++++++
T Consensus 6 ~~~~~~pkaelH~HL~g~l~p~~v~~la~r---~gi~~~~~~~~~~~~~~~~~~~~~~~~l~~fl~~~y~~~~v~~~~~~ 82 (345)
T COG1816 6 ELIRHLPKAELHRHLEGSLRPELVLELARR---YGIALPPAEFDETILEELRAEYNKFNDLQEFLEKYYRGASVLRTEED 82 (345)
T ss_pred HHHhhchhhHhhhcccCCcCHHHHHHHHHH---hCccCCcccccchhHHHHHHHHhccccHHHHHHHHHHHHHhhccHHH
Confidence 578899999999999999999999999995 666532 1 1223322 2368999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEeecCCCCccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCC
Q 026472 74 VTRITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGT 153 (238)
Q Consensus 74 ~~~~~~~~~~~~a~dgV~Y~Elr~~P~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (238)
+++++++++++++++|++|.|+||+|..+...|++.+++++++.++++.+.
T Consensus 83 ~~~la~~~~~~~~~~~~vy~Ei~f~p~~~t~~~l~~~~~~e~~~~~~~~~~----------------------------- 133 (345)
T COG1816 83 FYRLAYEYLEDAAADNVVYAEIRFDPYLHTKRGLSVDTVVEGLIAGFRPAE----------------------------- 133 (345)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeCcchhhhccCCHHHHHHHHHHHHHHHh-----------------------------
Confidence 999999999999999999999999998888999999999999999999863
Q ss_pred CCCCcEEEEEEEEeCCCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCCCcccHHHHHHHHHHcCCCeeEecCCCCChhH
Q 026472 154 RGKKIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEVHMSFE 233 (238)
Q Consensus 154 ~~~~i~vrlI~~~~R~~~~e~~~~~~~la~~~~~~~vvG~dL~G~E~~~~~~~f~~~f~~ar~~gl~~t~HAGE~~~~~~ 233 (238)
+++||..++|+|..|+.+.+.+.+.++.+.+++...++|+|++|+|.++|+..|..+|+.+|++|+++|.||||.++|++
T Consensus 134 ~~~gi~s~li~~~~r~~~~e~~~~~~~~a~~~~~~~~~~~~l~~~e~~~p~~~f~~~f~~~r~~gl~lt~HaGE~~~~~~ 213 (345)
T COG1816 134 RDFGIHSKLIVCLLRHLGFESADEELELALRYRDKLVTGVGLAGSESGYPPELFVSLFKLARDNGLKLTIHAGEAGGPES 213 (345)
T ss_pred hccCCccceEEEEEeecCHHHHHHHHHHHhhcccccCccCCCCcccccCCHHHHHHHHHHHHHcCceEEEeccccCCcHH
Confidence 67899999999999999999999999999999988788999999999999999999999999999999999999999999
Q ss_pred HHhhC
Q 026472 234 CLLLL 238 (238)
Q Consensus 234 i~~~~ 238 (238)
||++|
T Consensus 214 i~~al 218 (345)
T COG1816 214 IRDAL 218 (345)
T ss_pred HHHHH
Confidence 99875
No 7
>PRK09358 adenosine deaminase; Provisional
Probab=100.00 E-value=2.1e-38 Score=286.14 Aligned_cols=206 Identities=34% Similarity=0.468 Sum_probs=180.0
Q ss_pred ChhhhcCChhhhccccCCCCCHHHHHHHHHHhccCCCCCch-hhhHH---H-hcCCCCHHHHHHHhHHHHhhcCChHHHH
Q 026472 1 MEWFASMPKVELHAHLNGSIRDSTLLELARVLGEKGVIVFS-DVEHV---I-MKSDRSLHEVFKLFDLIHVLTTDHATVT 75 (238)
Q Consensus 1 ~~~~~~lPK~eLH~HL~Gsi~~~tl~~la~~~~~~~~~~~~-~~~~~---~-~~~~~~l~~f~~~f~~~~~l~~~~~~~~ 75 (238)
++|+++|||+|||+||+||++++|+++|+++ +|+.++. +.+.+ . ...+.+|.+|+..|.....++.|+++++
T Consensus 4 ~~~~~~lpK~eLH~Hl~Gs~~~~~l~~l~~~---~~~~~p~~~~~~~~~~r~~~~~~~l~~~l~~~~~~~~~~~t~ed~~ 80 (340)
T PRK09358 4 LMIIRSLPKAELHLHLDGSLRPETILELARR---NGIALPATDVEELPWVRAAYDFRDLQSFLDKYDAGVAVLQTEEDLR 80 (340)
T ss_pred hHHHhcCCceeEEecccCCCCHHHHHHHHHH---cCCCCCCCCHHHHhhhcccccCCCHHHHHHHHHHHHHHhCCHHHHH
Confidence 3689999999999999999999999999995 6765432 33333 2 2356789999999999889999999999
Q ss_pred HHHHHHHHHHHhcCCeEEEEeecCCCCccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCC
Q 026472 76 RITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRG 155 (238)
Q Consensus 76 ~~~~~~~~~~a~dgV~Y~Elr~~P~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (238)
+.++.++++++++||.|+|+|++|..+...|++.+++++++.+++.++. .+
T Consensus 81 ~~~~~~~~e~~~~Gvty~E~~~~p~~~~~~gl~~~~~~~a~~~~~~~a~-----------------------------~~ 131 (340)
T PRK09358 81 RLAFEYLEDAAADGVVYAEIRFDPQLHTERGLPLEEVVEAVLDGLRAAE-----------------------------AE 131 (340)
T ss_pred HHHHHHHHHHHHcCCEEEEEEeChhhhhhcCCCHHHHHHHHHHHHHHHH-----------------------------Hh
Confidence 9999999999999999999999998776779999999999999998864 46
Q ss_pred CCcEEEEEEEEeCCCCHHHHHHHHHHHHhc-CCCcEEEEeccCCCCCCCcccHHHHHHHHHHcCCCeeEecCCCCChhHH
Q 026472 156 KKIYVRLLLSIDRRETTEAAMETVKLALEM-RDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEVHMSFEC 234 (238)
Q Consensus 156 ~~i~vrlI~~~~R~~~~e~~~~~~~la~~~-~~~~vvG~dL~G~E~~~~~~~f~~~f~~ar~~gl~~t~HAGE~~~~~~i 234 (238)
+||.+++|++++|+.+++.+.+.++.+.+. .++.+||||++|+|...++..|.++|+.|++.|+++|+|+||+.+++++
T Consensus 132 ~gi~~~li~~~~r~~~~~~~~~~~~~~~~~~~~~~vvg~~l~g~e~~~~~~~~~~~~~~A~~~g~~~~~H~~E~~~~~~~ 211 (340)
T PRK09358 132 FGISVRLILCFMRHFGEEAAARELEALAARYRDDGVVGFDLAGDELGFPPSKFARAFDRARDAGLRLTAHAGEAGGPESI 211 (340)
T ss_pred cCceEEEEEEecCCCCHHHHHHHHHHHHHHhcCCcEEEEeCCCcCCCCCHHHHHHHHHHHHHCCCCeEEcCCCCCchhHH
Confidence 799999999999998888888887777653 4567999999999998888999999999999999999999999998888
Q ss_pred HhhC
Q 026472 235 LLLL 238 (238)
Q Consensus 235 ~~~~ 238 (238)
+++|
T Consensus 212 ~~al 215 (340)
T PRK09358 212 WEAL 215 (340)
T ss_pred HHHH
Confidence 7653
No 8
>TIGR01430 aden_deam adenosine deaminase. This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase.
Probab=100.00 E-value=1.7e-36 Score=272.00 Aligned_cols=199 Identities=33% Similarity=0.466 Sum_probs=176.0
Q ss_pred CChhhhccccCCCCCHHHHHHHHHHhccCCCCCch---hhhHHHhc--CCCCHHHHHHHhHHHHhhcCChHHHHHHHHHH
Q 026472 7 MPKVELHAHLNGSIRDSTLLELARVLGEKGVIVFS---DVEHVIMK--SDRSLHEVFKLFDLIHVLTTDHATVTRITQEV 81 (238)
Q Consensus 7 lPK~eLH~HL~Gsi~~~tl~~la~~~~~~~~~~~~---~~~~~~~~--~~~~l~~f~~~f~~~~~l~~~~~~~~~~~~~~ 81 (238)
|||+|||+||+||++++|+++|+++ +|+.+++ +.+.+... .+.+|.+|++.|.++..++.+++++++.++.+
T Consensus 1 lpK~eLH~Hl~Gsi~~~~l~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~t~e~l~~~~~~~ 77 (324)
T TIGR01430 1 LPKAELHLHLEGSIRPETLLELAQK---NGIPLPADLQSGEELKEAYDKFRDLQDFLAKYDFGVEVLRTEDDFKRLAYEY 77 (324)
T ss_pred CCceeeEecccCCCCHHHHHHHHHH---cCCCCCCCcccHHHHHhhhccCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 7999999999999999999999995 6655432 33333322 26799999999999999999999999999999
Q ss_pred HHHHHhcCCeEEEEeecCCCCccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCCCcEEE
Q 026472 82 VEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYVR 161 (238)
Q Consensus 82 ~~~~a~dgV~Y~Elr~~P~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vr 161 (238)
+++++++||.|+|+|++|..+...|++.+++++++.+++.+++ .++|+.++
T Consensus 78 ~~e~~~~Gv~y~E~r~~p~~~~~~g~~~~~~~~~~~~~i~~a~-----------------------------~~~gi~~~ 128 (324)
T TIGR01430 78 VEKAAKDGVVYAEVFFDPQLHTNRGISPDTVVEAVLDGLDEAE-----------------------------RDFGIKSR 128 (324)
T ss_pred HHHHHHcCCEEEEEEeCccccccCCCCHHHHHHHHHHHHHHHH-----------------------------HhcCCeEE
Confidence 9999999999999999998877889999999999999998874 35799999
Q ss_pred EEEEEeCCCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCCCcccHHHHHHHHHHcCCCeeEecCCCCChhHHHhh
Q 026472 162 LLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEVHMSFECLLL 237 (238)
Q Consensus 162 lI~~~~R~~~~e~~~~~~~la~~~~~~~vvG~dL~G~E~~~~~~~f~~~f~~ar~~gl~~t~HAGE~~~~~~i~~~ 237 (238)
+|+|++|+.+++.+.+.++++.+++.+.+||||++|+|...++..|..+|+.|++.|+++++|+||+.++.++.++
T Consensus 129 li~~~~r~~~~~~~~~~~~~~~~~~~~~vvg~~l~~~e~~~~~~~~~~~~~~A~~~g~~i~~Ha~E~~~~~~~~~~ 204 (324)
T TIGR01430 129 LILCGMRHKQPEAAEETLELAKPYKEQTIVGFGLAGDERGGPPPDFVRAFAIARELGLHLTVHAGELGGPESVREA 204 (324)
T ss_pred EEEEEeCCCCHHHHHHHHHHHHhhccCcEEEecCCCCCCCCCHHHHHHHHHHHHHCCCCeEEecCCCCChHHHHHH
Confidence 9999999999999999999999887767999999999987788899999999999999999999999887776643
No 9
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=100.00 E-value=1.5e-34 Score=259.25 Aligned_cols=200 Identities=34% Similarity=0.486 Sum_probs=175.2
Q ss_pred cCChhhhccccCCCCCHHHHHHHHHHhccCCCCCch-hh--hHHH--hcCCCCHHHHHHHhHHHHhhcCChHHHHHHHHH
Q 026472 6 SMPKVELHAHLNGSIRDSTLLELARVLGEKGVIVFS-DV--EHVI--MKSDRSLHEVFKLFDLIHVLTTDHATVTRITQE 80 (238)
Q Consensus 6 ~lPK~eLH~HL~Gsi~~~tl~~la~~~~~~~~~~~~-~~--~~~~--~~~~~~l~~f~~~f~~~~~l~~~~~~~~~~~~~ 80 (238)
.|||+|||+||+||++++||++|+++ +|...+. .. .... ...+.+|.+|++.|..+..+..++++++..++.
T Consensus 1 ~lpK~elH~Hl~Gs~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ed~~~~~~~ 77 (325)
T cd01320 1 NLPKAELHLHLDGSLRPETILELAKK---NGITLPASDVELLELVVAAYNFSDLQDFLAKYDFGLSVLQTEEDFERLAYE 77 (325)
T ss_pred CCCceEEeecccCCCCHHHHHHHHHH---hCCCCCCCCHHHHHHHhccccCCCHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 48999999999999999999999996 5544322 11 1112 235678999999999988998999999999999
Q ss_pred HHHHHHhcCCeEEEEeecCCCCccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCCCcEE
Q 026472 81 VVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYV 160 (238)
Q Consensus 81 ~~~~~a~dgV~Y~Elr~~P~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 160 (238)
++++++++||.|+|+|++|......|++.+++++++.+++.++. .++|+.+
T Consensus 78 ~~~e~~~~Gvt~~E~~~~p~~~~~~~~~~~~~~~~~~~ai~~~~-----------------------------~~~gi~~ 128 (325)
T cd01320 78 YLEDAAADGVVYAEIRFSPQLHTRRGLSFDEVVEAVLRGLDEAE-----------------------------AEFGIKA 128 (325)
T ss_pred HHHHHHHcCCEEEEEEeCchhhccCCCCHHHHHHHHHHHHHHHH-----------------------------HhcCCeE
Confidence 99999999999999999998777788999999999999999874 3579999
Q ss_pred EEEEEEeCCCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCCCcccHHHHHHHHHHcCCCeeEecCCCCChhHHHhh
Q 026472 161 RLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEVHMSFECLLL 237 (238)
Q Consensus 161 rlI~~~~R~~~~e~~~~~~~la~~~~~~~vvG~dL~G~E~~~~~~~f~~~f~~ar~~gl~~t~HAGE~~~~~~i~~~ 237 (238)
++|++++|..+++.+.+.++++.+++.+.++|+|++|+|...+...|.++++.|++.|+++++|+||+.+++++.++
T Consensus 129 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vvg~~l~~~~~~~~~~~~~~~~~~A~~~g~~v~~H~~E~~~~~~~~~a 205 (325)
T cd01320 129 RLILCGLRHLSPESAQETLELALKYRDKGVVGFDLAGDEVGFPPEKFVRAFQRAREAGLRLTAHAGEAGGPESVRDA 205 (325)
T ss_pred EEEEEecCCCCHHHHHHHHHHHHhccCCCEEEeecCCCCCCCCHHHHHHHHHHHHHCCCceEEeCCCCCCHHHHHHH
Confidence 99999999999999999999999887777999999999988888999999999999999999999999888777654
No 10
>TIGR01431 adm_rel adenosine deaminase-related growth factor. Members of this family have been described as secreted proteins with growth factor activity and regions of adenosine deaminase homology in insects, mollusks, and vertebrates.
Probab=100.00 E-value=2.5e-34 Score=269.40 Aligned_cols=208 Identities=23% Similarity=0.248 Sum_probs=168.1
Q ss_pred hhhhcCCh-hhhccccCCCCCHHHHHHHHHHhccCCCCC-------------c---------------hh---------h
Q 026472 2 EWFASMPK-VELHAHLNGSIRDSTLLELARVLGEKGVIV-------------F---------------SD---------V 43 (238)
Q Consensus 2 ~~~~~lPK-~eLH~HL~Gsi~~~tl~~la~~~~~~~~~~-------------~---------------~~---------~ 43 (238)
+++++||| +-||+|+++.+++++|++.+... .|... | ++ +
T Consensus 72 ~i~~~MPKG~~LH~H~~a~~~~d~li~~~~~~--~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~w~~~~~~r~~~~~~~f 149 (479)
T TIGR01431 72 KIISSMPKGGALHLHDLAIVSTDWLIKNLTYR--DNLWVCQGKGNKEVLRFRFPKPKPDQCDCKWELLEDVRKSHNAEEF 149 (479)
T ss_pred HHHHhCCCchhhccCccccCCHHHHHHHHhCC--CCeEEEecCCCceeEEEEeccCCCCCCCceeeeHHHHHHhCCHHHH
Confidence 57999999 89999999999999999654431 11100 0 00 1
Q ss_pred hHHHh---------------cCCCCHHHHHHHhHHHHhhcCChHHHHHHHHHHHHHHHhcCCeEEEEeecC-CCCccCC-
Q 026472 44 EHVIM---------------KSDRSLHEVFKLFDLIHVLTTDHATVTRITQEVVEDFASENIVYLELRTTP-KRNESIG- 106 (238)
Q Consensus 44 ~~~~~---------------~~~~~l~~f~~~f~~~~~l~~~~~~~~~~~~~~~~~~a~dgV~Y~Elr~~P-~~~~~~~- 106 (238)
+.+.. ....-|..|++.|..+.++++|+++++++++++++++++|||+|+|+|++| ..+...|
T Consensus 150 ~~~l~~~~~~~~~~~~~~~~~~~~~W~~F~~~f~~~~~ll~y~p~~~~~~~~~l~d~~~DgV~Y~ElR~~p~~~~~~~G~ 229 (479)
T TIGR01431 150 DDYLRENFTLYTTVPELDYPTINEVWERFGSIFALLDGLLFYAPSWRDYYYRALEEFYADNVQYLELRSTLFILYELEGT 229 (479)
T ss_pred HHHHHHhcccCcCCcccccCCHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHcCCEEEEEEecCchHhhcCCC
Confidence 11111 012358899999999999999999999999999999999999999999998 4444445
Q ss_pred -CCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCCCcEEEEEEEEeCCCCHHHHHHHHHHHHhc
Q 026472 107 -MSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYVRLLLSIDRRETTEAAMETVKLALEM 185 (238)
Q Consensus 107 -~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vrlI~~~~R~~~~e~~~~~~~la~~~ 185 (238)
++.+++++++.++++++++. .++ +|.+|+|+|++|+.+++.+.+.+++|.++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~--------------------------~~~-fi~~rlI~~~~R~~~~~~~~~~~~~a~~~ 282 (479)
T TIGR01431 230 SHDEEDSVRIYKEVTEKFMAE--------------------------HPD-FIGSKLIYSPLRNKDKEELDNYIKVAMEL 282 (479)
T ss_pred CCCHHHHHHHHHHHHHHHHHh--------------------------CCC-CeEEEEEEEccCCCCHHHHHHHHHHHHHH
Confidence 58899999999999988652 133 69999999999999999999999999886
Q ss_pred C---CCcEEEEeccCCCC-CCCcccHHHHHHHHH-HcCCCeeEecCCCC-----ChhHHHhhC
Q 026472 186 R---DLGVVGIDLSGNPT-KGEWTTFLPALKFAR-EQGLQITLHCGEVH-----MSFECLLLL 238 (238)
Q Consensus 186 ~---~~~vvG~dL~G~E~-~~~~~~f~~~f~~ar-~~gl~~t~HAGE~~-----~~~~i~~~~ 238 (238)
+ ++.||||||+|+|+ +.|+.+|.++|..++ +.|+++|+||||+. +++||+++|
T Consensus 283 k~~~p~~vvGfDL~G~E~~g~pl~~f~~~~~~~~~~~gl~~t~HAGE~~~~g~~~d~nl~dAI 345 (479)
T TIGR01431 283 KEKYPDFVAGFDLVGQEDKGRSLLDFIDALLGPSDKEKLPYFFHAGETNWQGTTVDENLIDAL 345 (479)
T ss_pred HhhCCCeEEEEeccCCCCCCCCHHHHHHHHHHHHHhCCCCEEEecCCcCCCCCCchhHHHHHH
Confidence 4 45799999999996 558899999998644 48999999999997 458998874
No 11
>TIGR01224 hutI imidazolonepropionase. This enzyme catalyzes the third step in histidine degradation.
Probab=99.16 E-value=2.7e-09 Score=97.31 Aligned_cols=131 Identities=11% Similarity=0.053 Sum_probs=93.0
Q ss_pred CChHHHHHHHHHHHHHHHhcCCeEEEEeecCCCCccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccc
Q 026472 69 TDHATVTRITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMND 148 (238)
Q Consensus 69 ~~~~~~~~~~~~~~~~~a~dgV~Y~Elr~~P~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (238)
-++++++..++..++++.+.||.|+|++.. .|++.++.+. +.++++++.
T Consensus 88 ~~~ed~~~~a~~~~~e~l~~Gvt~ve~~~~------~g~~~~~~~~-~~~a~~~~~------------------------ 136 (377)
T TIGR01224 88 ASEEELLKLALFRLKSMLRSGTTTAEVKSG------YGLDLETELK-MLRAAKALH------------------------ 136 (377)
T ss_pred CCHHHHHHHHHHHHHHHHHCCceEEEeccc------CCCCHHHHHH-HHHHHHHHH------------------------
Confidence 578899999999999999999999998732 2556555543 677776653
Q ss_pred cccCCCCCCcEEEEEEEEeCCCCHH-------HHHHHHHHHHh-c-CCCcEEEEeccCCCCCCCcccHHHHHHHHHHcCC
Q 026472 149 ACNGTRGKKIYVRLLLSIDRRETTE-------AAMETVKLALE-M-RDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGL 219 (238)
Q Consensus 149 ~~~~~~~~~i~vrlI~~~~R~~~~e-------~~~~~~~la~~-~-~~~~vvG~dL~G~E~~~~~~~f~~~f~~ar~~gl 219 (238)
.+.++.+.++.+..+..+.+ ......+.+++ . +...|.|+|+.|.+...+++.+..+++.|++.|+
T Consensus 137 -----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~A~~~g~ 211 (377)
T TIGR01224 137 -----EEQPVDVVTTFLGAHAVPPEFQGRPDDYVDGICEELIPQVAEEGLASFADVFCEAGVFSVEQSRRILQAAQEAGL 211 (377)
T ss_pred -----hhCCCceEeeeeecccCCccccCCHHHHHHHHHHHHHHHHHHhCCCCeeEEEecCCCcCHHHHHHHHHHHHHCCC
Confidence 34678888774433333321 11122222222 1 2235999999999988888999999999999999
Q ss_pred CeeEecCCCCChhHHH
Q 026472 220 QITLHCGEVHMSFECL 235 (238)
Q Consensus 220 ~~t~HAGE~~~~~~i~ 235 (238)
++++|++|...+..+.
T Consensus 212 ~v~~H~~e~~~~~~~~ 227 (377)
T TIGR01224 212 PVKLHAEELSNLGGAE 227 (377)
T ss_pred CEEEEecCCCCCCHHH
Confidence 9999999987655544
No 12
>cd01296 Imidazolone-5PH Imidazolonepropionase/imidazolone-5-propionate hydrolase (Imidazolone-5PH) catalyzes the third step in the histidine degradation pathway, the hydrolysis of (S)-3-(5-oxo-4,5-dihydro-3H-imidazol-4-yl)propanoate to N-formimidoyl-L-glutamate. In bacteria, the enzyme is part of histidine utilization (hut) operon.
Probab=98.81 E-value=1.5e-07 Score=85.50 Aligned_cols=129 Identities=10% Similarity=0.072 Sum_probs=87.9
Q ss_pred CChHHHHHHHHHHHHHHHhcCCeEEEEeecCCCCccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccc
Q 026472 69 TDHATVTRITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMND 148 (238)
Q Consensus 69 ~~~~~~~~~~~~~~~~~a~dgV~Y~Elr~~P~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (238)
-++++++..+++.+.++.+.||.|+|.+.. .+++.+..++ +.+++.+++.
T Consensus 85 ~~~~d~~~~a~~~~~~~~~~Gvt~~~~~~~------~~~~~~~~~~-~~~a~~~~~~----------------------- 134 (371)
T cd01296 85 ASEDELFASALRRLARMLRHGTTTVEVKSG------YGLDLETELK-MLRVIRRLKE----------------------- 134 (371)
T ss_pred CCHHHHHHHHHHHHHHHHHCCceEEEeccc------CCCCHHHHHH-HHHHHHHHHh-----------------------
Confidence 357889999999999999999999998722 2455555555 6677766532
Q ss_pred cccCCCCCCcEEEEEEEEe-CCCCHH-------HHHHHHHHHHh-c-CCCcEEEEeccCCCCCCCcccHHHHHHHHHHcC
Q 026472 149 ACNGTRGKKIYVRLLLSID-RRETTE-------AAMETVKLALE-M-RDLGVVGIDLSGNPTKGEWTTFLPALKFAREQG 218 (238)
Q Consensus 149 ~~~~~~~~~i~vrlI~~~~-R~~~~e-------~~~~~~~la~~-~-~~~~vvG~dL~G~E~~~~~~~f~~~f~~ar~~g 218 (238)
+.++ .++.++. |...|+ ......+.+++ . ....+.|+|+.|.+...+...+..+++.|++.|
T Consensus 135 ------~~~~--~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~g 206 (371)
T cd01296 135 ------EGPV--DLVSTFLGAHAVPPEYKGREEYIDLVIEEVLPAVAEENLADFCDVFCEKGAFSLEQSRRILEAAKEAG 206 (371)
T ss_pred ------hCCC--ceEeeeeecccCCcccCChHHHHHHHHHHHHHHHHHhCCCCEEEEeecCCccCHHHHHHHHHHHHHCC
Confidence 1233 3555555 443332 11111222222 1 135689999998887777788999999999999
Q ss_pred CCeeEecCCCCChhHHH
Q 026472 219 LQITLHCGEVHMSFECL 235 (238)
Q Consensus 219 l~~t~HAGE~~~~~~i~ 235 (238)
+++++|++|..++..+.
T Consensus 207 ~~v~~H~~e~~~~~~~~ 223 (371)
T cd01296 207 LPVKIHADELSNIGGAE 223 (371)
T ss_pred CeEEEEEcCcCCCCHHH
Confidence 99999999987665544
No 13
>PRK09230 cytosine deaminase; Provisional
Probab=98.79 E-value=3.8e-08 Score=91.83 Aligned_cols=129 Identities=12% Similarity=0.071 Sum_probs=90.7
Q ss_pred hcCChHHHHHHHHHHHHHHHhcCCeEEEEeecCCCCccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccc
Q 026472 67 LTTDHATVTRITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNM 146 (238)
Q Consensus 67 l~~~~~~~~~~~~~~~~~~a~dgV~Y~Elr~~P~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (238)
...++++++..++..++++.+.|+.|+|.+++|... . ...++++.++.++++
T Consensus 93 ~~~t~ed~~~~a~~~~~e~l~~GvTtvr~~~d~~~~---~---~~~~~a~~~~~~~~~---------------------- 144 (426)
T PRK09230 93 ALLTHEDVKQRAWQTLKWQIANGIQHVRTHVDVSDP---T---LTALKAMLEVKEEVA---------------------- 144 (426)
T ss_pred hcCCHHHHHHHHHHHHHHHHHcCcccEEeccccCCc---c---hhHHHHHHHHHHHhh----------------------
Confidence 346789999999999999999999999999987421 1 145677777766543
Q ss_pred cccccCCCCCCcEEEEEEEEeCC--CCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCCCcccHHHHHHHHHHcCCCeeEe
Q 026472 147 NDACNGTRGKKIYVRLLLSIDRR--ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLH 224 (238)
Q Consensus 147 ~~~~~~~~~~~i~vrlI~~~~R~--~~~e~~~~~~~la~~~~~~~vvG~dL~G~E~~~~~~~f~~~f~~ar~~gl~~t~H 224 (238)
...+++ |.++.+. .+.+...+.++.+.+...+.++|++.++.+...+...+..+|+.|++.|+++++|
T Consensus 145 -------~~~~~~---i~a~~~~~~~~~~~~~~~l~~a~~~~~~~vg~~p~~~~~~~~~~e~l~~~~~~A~~~g~~~~~H 214 (426)
T PRK09230 145 -------PWVDLQ---IVAFPQEGILSYPNGEALLEEALRLGADVVGAIPHFEFTREYGVESLHKAFALAQKYDRLIDVH 214 (426)
T ss_pred -------CcceEE---EEeccCccccCCccHHHHHHHHHHcCCCEEeCCCCccccchhHHHHHHHHHHHHHHhCCCcEEE
Confidence 233444 3334333 2223345677777777555455555555554445678999999999999999999
Q ss_pred cCCCCChhH
Q 026472 225 CGEVHMSFE 233 (238)
Q Consensus 225 AGE~~~~~~ 233 (238)
++|+.++.+
T Consensus 215 ~~E~~~~~~ 223 (426)
T PRK09230 215 CDEIDDEQS 223 (426)
T ss_pred ECCCCCcch
Confidence 999887644
No 14
>cd01319 AMPD AMP deaminase (AMPD) catalyzes the hydrolytic deamination of adensosine monophosphate (AMP) at position 6 of the adenine nucleotide ring. AMPD is a diverse and highly regulated eukaryotic key enzyme of the adenylate catabolic pathway.
Probab=98.50 E-value=4e-06 Score=79.38 Aligned_cols=198 Identities=21% Similarity=0.228 Sum_probs=111.7
Q ss_pred hhcCChhhhccccCCCCCHHHHHHHHHHhcc-CCCCC--ch-----hhhHHHh-----------------c---CCCCHH
Q 026472 4 FASMPKVELHAHLNGSIRDSTLLELARVLGE-KGVIV--FS-----DVEHVIM-----------------K---SDRSLH 55 (238)
Q Consensus 4 ~~~lPK~eLH~HL~Gsi~~~tl~~la~~~~~-~~~~~--~~-----~~~~~~~-----------------~---~~~~l~ 55 (238)
+...+|||.|+|+.+|+....|++..++--+ .+-.. .. +..+++. . ....++
T Consensus 55 fyn~~KVD~~vh~s~cm~~k~Ll~FI~~k~~~~pd~vv~~~~g~~~TL~e~f~~l~~~~~~ltvd~L~~~a~~~~~~rfd 134 (496)
T cd01319 55 FYNVRKVDTHVHHSACMNQKHLLRFIKKKLRTEPDEVVIFRDGKKLTLKEVFDSLKLTAYDLSVDTLDVHADRNTFHRFD 134 (496)
T ss_pred ceeCceecccccccccCCHHHHHHHHHHHHHcCCCcEEECCCCccccHHHHHHHcCCChhhCchhhcCcCCCCCcccccc
Confidence 4568999999999999999999998765211 11000 00 1111110 0 011223
Q ss_pred HHH------------HHhHHHHhhcCChHHHHHHHHHHHHHHHhcCCeEEEEeecCCCCccCCCCHHHHHHHHHHHHHhh
Q 026472 56 EVF------------KLFDLIHVLTTDHATVTRITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAV 123 (238)
Q Consensus 56 ~f~------------~~f~~~~~l~~~~~~~~~~~~~~~~~~a~dgV~Y~Elr~~P~~~~~~~~~~~~~l~~v~~~~~~~ 123 (238)
.|- +.|-.....+. =+=+.++++++++++-...-.++|.|++.. |.+.+| ++-+..=+.+.
T Consensus 135 ~fn~kynp~g~~~Lr~iFLktdn~~~-G~y~Ael~k~v~~~le~~kyq~~E~rlsiy-----G~~~~E-w~~lA~W~~~~ 207 (496)
T cd01319 135 KFNLKYNPIGESRLREIFLKTDNYIN-GRYLAEITKEVFSDLEESKYQHAEYRLSIY-----GRSKDE-WDKLASWVVDN 207 (496)
T ss_pred ccccccCccchHHHHHHHhccCCCcc-hHhHHHHHHHHHHHHHhccceeEEEEEEEe-----CCCHHH-HHHHHHHHHHc
Confidence 332 22221222221 123578899999999999999999999654 345555 33333322221
Q ss_pred hhccccccccccccccccccccccccccCCCCCCcEEEEEEEEeCCCCH-------HHHHHHHHHHHh------cCC---
Q 026472 124 SAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYVRLLLSIDRRETT-------EAAMETVKLALE------MRD--- 187 (238)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vrlI~~~~R~~~~-------e~~~~~~~la~~------~~~--- 187 (238)
+- +.-.+|+++.+.|-.+. ..-.+++++... ..|
T Consensus 208 ----------------------------~l--~s~n~rW~iqipR~y~~~~~~g~~~~Fq~~L~nIF~PLfeat~~P~~~ 257 (496)
T cd01319 208 ----------------------------DL--FSPNVRWLIQIPRLYDVYKKSGIVNSFQEMLENIFEPLFEATKDPSSH 257 (496)
T ss_pred ----------------------------CC--CCCCceEEEecchhHHHHhhcCCcCCHHHHHHHHHHHHHHHhcCcccC
Confidence 11 12357888888885432 113334444322 111
Q ss_pred -------CcEEEEeccCCCCCC--------C-c-----------ccHHH-------HHHHHHH-cC---CCeeEecCCCC
Q 026472 188 -------LGVVGIDLSGNPTKG--------E-W-----------TTFLP-------ALKFARE-QG---LQITLHCGEVH 229 (238)
Q Consensus 188 -------~~vvG~dL~G~E~~~--------~-~-----------~~f~~-------~f~~ar~-~g---l~~t~HAGE~~ 229 (238)
..|+|||++.+|++. | | ..|+- .+...|+ .| +.+++||||.+
T Consensus 258 p~l~~fL~~v~gfd~VddEs~~~~~~~~~~p~P~~w~~~~nPpy~Yy~YY~yaNi~~LN~~R~~rglntf~~r~HaGE~g 337 (496)
T cd01319 258 PELHVFLQQVIGFDSVDDESKSERRFTRKFPKPEEWTSEENPPYSYYLYYMYANITTLNSFRKARGFNTFVLRPHCGEAG 337 (496)
T ss_pred HHHHHHHHhCCceEEEcCCCccccCCCcCCCChhcCCCCCCCCceeeHHHHHHHHHHHHHHHHHcCCCCcceeeecCCCC
Confidence 149999999999862 1 1 11111 2333333 34 68999999999
Q ss_pred ChhHHHhhC
Q 026472 230 MSFECLLLL 238 (238)
Q Consensus 230 ~~~~i~~~~ 238 (238)
++++|++++
T Consensus 338 ~~~~l~~al 346 (496)
T cd01319 338 DIDHLASAF 346 (496)
T ss_pred ChHHHHHHh
Confidence 999998764
No 15
>PLN02768 AMP deaminase
Probab=98.31 E-value=1.3e-05 Score=78.96 Aligned_cols=197 Identities=18% Similarity=0.206 Sum_probs=109.8
Q ss_pred hcCChhhhccccCCCCCHHHHHHHHHHhccC-CC-CC-ch-----hhhHHHh-----------------c---CCCCHHH
Q 026472 5 ASMPKVELHAHLNGSIRDSTLLELARVLGEK-GV-IV-FS-----DVEHVIM-----------------K---SDRSLHE 56 (238)
Q Consensus 5 ~~lPK~eLH~HL~Gsi~~~tl~~la~~~~~~-~~-~~-~~-----~~~~~~~-----------------~---~~~~l~~ 56 (238)
.+.=|||-|+|+.+|+....|++..++--++ +- .+ +. ++.+++. . ....|+.
T Consensus 379 YnvrKVDthvh~sacMnqk~LLrFIk~kl~~epd~vV~~~dGk~~TL~evFe~l~lt~ydLsVD~Ldvha~~~tfhRfDk 458 (835)
T PLN02768 379 YNVRKVDTHVHHSACMNQKHLLRFIKSKLRKEPDEVVIFRDGTYLTLKEVFESLDLTGYDLNVDLLDVHADKSTFHRFDK 458 (835)
T ss_pred eeeeEeeccchhhccCCHHHHHHHHHHHHhcCCCceeeccCCccccHHHHHHHcCCcccCCcccccccCCCccccccccc
Confidence 3456999999999999999999987652111 10 00 00 1111111 0 0112222
Q ss_pred HHH------------HhHHHHhhcCChHHHHHHHHHHHHHHHhcCCeEEEEeecCCCCccCCCCHHHHHHHHHHHHHhhh
Q 026472 57 VFK------------LFDLIHVLTTDHATVTRITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVS 124 (238)
Q Consensus 57 f~~------------~f~~~~~l~~~~~~~~~~~~~~~~~~a~dgV~Y~Elr~~P~~~~~~~~~~~~~l~~v~~~~~~~~ 124 (238)
|-. .|-.....+. -.-+.+++++++.++-...-+++|+|++.. |.+.+|+ +-+..=+.+.
T Consensus 459 Fn~kynP~G~s~LReiFLktDN~i~-GrYfAELiK~V~~dlE~sKyQ~aE~RlsIY-----Gr~~~EW-~kLA~W~v~~- 530 (835)
T PLN02768 459 FNLKYNPCGQSRLREIFLKQDNLIQ-GRFLAELTKQVFSDLEASKYQMAEYRISIY-----GRKQSEW-DQLASWIVNN- 530 (835)
T ss_pred cccccCccchHHHHHHHcCcCCCCC-hhhHHHHHHHHHHHHHhccceeeEEEEEec-----CCCHHHH-HHHHHHHHHc-
Confidence 222 2222222222 234688899999999999999999999853 3455553 2222222211
Q ss_pred hccccccccccccccccccccccccccCCCCCCcEEEEEEEEeCCCCH-------HHHHHHHHHHHh------cCC----
Q 026472 125 AVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYVRLLLSIDRRETT-------EAAMETVKLALE------MRD---- 187 (238)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vrlI~~~~R~~~~-------e~~~~~~~la~~------~~~---- 187 (238)
.-+.-.+|+++.+-|-.+. ..-.+++++... ..+
T Consensus 531 -----------------------------~l~S~nvRWlIQIPRlY~i~k~~g~v~nFqd~L~NIF~PLFeATl~P~~hp 581 (835)
T PLN02768 531 -----------------------------ELYSENVVWLIQLPRLYNVYKEMGIVTSFQNILDNIFIPLFEVTVDPDSHP 581 (835)
T ss_pred -----------------------------CCCCCCceEEEEcccchhhhhcCCccCCHHHHHHHHHHHHHHHhcCCccCH
Confidence 1122357777777773221 122334444322 111
Q ss_pred ------CcEEEEeccCCCCCC-------------------Cc-ccHHH-------HHHHHHH-cC---CCeeEecCCCCC
Q 026472 188 ------LGVVGIDLSGNPTKG-------------------EW-TTFLP-------ALKFARE-QG---LQITLHCGEVHM 230 (238)
Q Consensus 188 ------~~vvG~dL~G~E~~~-------------------~~-~~f~~-------~f~~ar~-~g---l~~t~HAGE~~~ 230 (238)
..|+|||.+.+|++. || ..|+- .+...|+ .| +.++.||||.++
T Consensus 582 ~L~~FL~~V~GFDsVdDESk~e~~~~~~~p~P~~W~~~~NPPyaYYlYYmyANi~~LN~lR~~rGlNTf~fRPHAGEag~ 661 (835)
T PLN02768 582 QLHVFLKQVVGLDLVDDESKPERRPTKHMPTPAQWTNVFNPAFSYYVYYCYANLYTLNKLRESKGMTTIKFRPHSGEAGD 661 (835)
T ss_pred HHHHHHHhcCCceeecCCCccccccCcCCCChhhCcCCCCCChhhhHHHHHHHHHHHHHHHHHCCCCccccccccCCCCC
Confidence 149999999999741 11 22221 2334443 35 568999999999
Q ss_pred hhHHHhhC
Q 026472 231 SFECLLLL 238 (238)
Q Consensus 231 ~~~i~~~~ 238 (238)
+++|++++
T Consensus 662 ~e~I~~Al 669 (835)
T PLN02768 662 IDHLAATF 669 (835)
T ss_pred HHHHHHHH
Confidence 99999875
No 16
>PLN03055 AMP deaminase; Provisional
Probab=98.29 E-value=1.8e-05 Score=76.29 Aligned_cols=197 Identities=18% Similarity=0.221 Sum_probs=109.4
Q ss_pred hcCChhhhccccCCCCCHHHHHHHHHHhcc-CCC-CC-ch-----hhhHHHh-----------------cCC---CCHHH
Q 026472 5 ASMPKVELHAHLNGSIRDSTLLELARVLGE-KGV-IV-FS-----DVEHVIM-----------------KSD---RSLHE 56 (238)
Q Consensus 5 ~~lPK~eLH~HL~Gsi~~~tl~~la~~~~~-~~~-~~-~~-----~~~~~~~-----------------~~~---~~l~~ 56 (238)
.+.=|||-|+|+.+|+....|++..++--+ .+- .+ +. +..+++. ... ..++.
T Consensus 146 yn~rKVDthvh~s~cm~qk~LL~FIk~k~~~~pd~vV~~~~gk~~TL~evfe~l~~~~~dLtVd~Ldvha~~~~fhrfD~ 225 (602)
T PLN03055 146 YNVRKVDTHVHHSSCMNQKHLLRFIKSKLRKEPDEVVIFRDGKYLTLREVFESLDLTGYDLNVDLLDVHADKNTFHRFDK 225 (602)
T ss_pred eeeeEeeccccccccCCHHHHHHHHHHHHHcCCCcEeecCCCcchhHHHHHHHcCCCcccCcccccCccCCCCccccccc
Confidence 345699999999999999999998765211 110 00 00 1111110 001 11222
Q ss_pred H------------HHHhHHHHhhcCChHHHHHHHHHHHHHHHhcCCeEEEEeecCCCCccCCCCHHHHHHHHHHHHHhhh
Q 026472 57 V------------FKLFDLIHVLTTDHATVTRITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVS 124 (238)
Q Consensus 57 f------------~~~f~~~~~l~~~~~~~~~~~~~~~~~~a~dgV~Y~Elr~~P~~~~~~~~~~~~~l~~v~~~~~~~~ 124 (238)
| .+.|-.....+. -.-+.+++++++.++-.....++|+|++.. |.+.+|+ +-+..=+.+.
T Consensus 226 fn~kynp~g~s~Lr~iFLktdN~i~-G~YlAel~k~v~~~le~skyQ~~E~rlsiY-----G~~~~EW-~kLA~W~~~~- 297 (602)
T PLN03055 226 FNLKYNPCGQSRLREIFLKQDNLIQ-GRFLAELTKEVFSDLEASKYQMAEYRISIY-----GRKQSEW-DQLASWIVNN- 297 (602)
T ss_pred ccccCCccchHHHHHHHcCcCCCcc-hhhHHHHHHHHHHHHHhccceeEEEEEEEe-----CCCHHHH-HHHHHHHHHc-
Confidence 2 222322222222 234688899999999999999999999754 3355553 2222222221
Q ss_pred hccccccccccccccccccccccccccCCCCCCcEEEEEEEEeCCCCH-------HHHHHHHHHHHh------cCC----
Q 026472 125 AVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYVRLLLSIDRRETT-------EAAMETVKLALE------MRD---- 187 (238)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vrlI~~~~R~~~~-------e~~~~~~~la~~------~~~---- 187 (238)
.-+.-.+|+++.+-|-.+. ..-.+++++... ..+
T Consensus 298 -----------------------------~l~s~n~rW~IqiPRly~~~~~~g~v~~Fqd~L~NIF~PLFeatl~P~~hp 348 (602)
T PLN03055 298 -----------------------------RLYSENVVWLIQLPRLYNVYKEMGIVQSFQQILDNIFKPLFEVTVDPSSHP 348 (602)
T ss_pred -----------------------------CcCCCCceEEEecCcchhhhhcCCCcCCHHHHHHHHHHHHHHHHcCcccCH
Confidence 0112357777777773321 122334444322 111
Q ss_pred ------CcEEEEeccCCCCCC--C-----------------c-ccHHH-------HHHHHHH-cC---CCeeEecCCCCC
Q 026472 188 ------LGVVGIDLSGNPTKG--E-----------------W-TTFLP-------ALKFARE-QG---LQITLHCGEVHM 230 (238)
Q Consensus 188 ------~~vvG~dL~G~E~~~--~-----------------~-~~f~~-------~f~~ar~-~g---l~~t~HAGE~~~ 230 (238)
..|+|||.+.+|++. + | ..|+- .+...|+ .| +.+++||||+++
T Consensus 349 ~L~~fL~~v~gfD~VddEs~~e~~~~~~~~~P~~W~~~~NPpy~Yy~YY~yaNl~~LN~lR~~rglnT~~~rpHAGEag~ 428 (602)
T PLN03055 349 QLHVFLKMVVGFDMVDDESKPERRPTKHMQTPEQWDIPFNPAYSYWAYYVYANLYTLNKLRESKGLNTIKFRPHAGEAGD 428 (602)
T ss_pred HHHHHHHhcCCceeecCCCccccccccCCCChhhCcCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCccccCCCCCC
Confidence 149999999999852 1 1 12221 2333443 34 678999999999
Q ss_pred hhHHHhhC
Q 026472 231 SFECLLLL 238 (238)
Q Consensus 231 ~~~i~~~~ 238 (238)
+++|++++
T Consensus 429 ~~~v~~al 436 (602)
T PLN03055 429 IDHLAAAF 436 (602)
T ss_pred HHHHHHHh
Confidence 99998864
No 17
>TIGR01429 AMP_deaminase AMP deaminase. This model describes AMP deaminase, a large, well-conserved eukaryotic protein involved in energy metabolism. Most members of the family have an additional, poorly alignable region of 150 amino acids or more N-terminal to the region included in the model.
Probab=98.25 E-value=7e-06 Score=79.21 Aligned_cols=129 Identities=21% Similarity=0.253 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEeecCCCCccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCC
Q 026472 74 VTRITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGT 153 (238)
Q Consensus 74 ~~~~~~~~~~~~a~dgV~Y~Elr~~P~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (238)
+.+++++++.++-...-+++|+|++-. |.+.+|+ +-+..=+.+.
T Consensus 275 fAelik~v~~~le~skyQ~~E~rlsiy-----G~~~~EW-~kLA~W~~~~------------------------------ 318 (611)
T TIGR01429 275 FAELVKEVFTDLEDSKYQYAEPRLSIY-----GRSPKEW-DSLARWIIDH------------------------------ 318 (611)
T ss_pred HHHHHHHHHHHHHhcCceeEEEEEEEe-----CCCHHHH-HHHHHHHHHc------------------------------
Confidence 578899999999999999999999654 3455553 2222222211
Q ss_pred CCCCcEEEEEEEEeCCCCH-------HHHHHHHHHHHh------cCC----------CcEEEEeccCCCCCCC-------
Q 026472 154 RGKKIYVRLLLSIDRRETT-------EAAMETVKLALE------MRD----------LGVVGIDLSGNPTKGE------- 203 (238)
Q Consensus 154 ~~~~i~vrlI~~~~R~~~~-------e~~~~~~~la~~------~~~----------~~vvG~dL~G~E~~~~------- 203 (238)
.-+.-.+|+++.+-|-.+. ..-.+++++... ..| ..|+|||.+.+|++..
T Consensus 319 ~l~s~n~rW~IqiPRly~v~k~~g~v~~Fq~~L~NIF~PLFeat~~P~~~p~L~~fL~~v~GfD~VddEs~~e~~~f~~~ 398 (611)
T TIGR01429 319 DVFSPNVRWLIQVPRLYDVYRSKKLVPNFGDMLENVFLPLFEVTKDPSSHPELHLFLQQVTGFDSVDDESKHEDHMFSRK 398 (611)
T ss_pred CCCCCCccEEEEcchhHHHHhcCCCcCCHHHHHHHHHHHHHHHhcCCccCHHHHHHHHhccceEEEcCCcccccccccCC
Confidence 1122357788888774332 112334444322 001 2499999999887632
Q ss_pred ---ccc-----------HH-------HHHHHHHH-cCCC---eeEecCCCCChhHHHhhC
Q 026472 204 ---WTT-----------FL-------PALKFARE-QGLQ---ITLHCGEVHMSFECLLLL 238 (238)
Q Consensus 204 ---~~~-----------f~-------~~f~~ar~-~gl~---~t~HAGE~~~~~~i~~~~ 238 (238)
|.+ |+ ..+...|+ .|++ ++.||||.+++++|++++
T Consensus 399 ~~~P~~w~~~~NPpy~Yy~YY~yaNl~~LN~~R~~rGLnt~~LrpHaGEag~~e~l~~A~ 458 (611)
T TIGR01429 399 FPSPDEWTSEQNPPYSYYLYYMYANIMVLNNFRRERGLNTFLLRPHCGEAGSVDHLVSAF 458 (611)
T ss_pred CCCcccccCCCCCCceeeHHHHHHHHHHHHHHHHHcCCCccceeecCCCCCCHHHHHHHh
Confidence 211 11 12333443 4777 999999999999999864
No 18
>PTZ00310 AMP deaminase; Provisional
Probab=98.10 E-value=8.5e-06 Score=84.29 Aligned_cols=129 Identities=16% Similarity=0.224 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEeecCCCCccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCC
Q 026472 74 VTRITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGT 153 (238)
Q Consensus 74 ~~~~~~~~~~~~a~dgV~Y~Elr~~P~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (238)
+.+++++++.++-++.-+++|.|.|-. |.+.+++ +.+..=+-+.
T Consensus 949 fAel~K~v~~~le~skyq~aE~RlSIY-----G~~~~EW-~kLA~W~~~~------------------------------ 992 (1453)
T PTZ00310 949 FAELIKDVFEQYSRDRFTYAENRLSIY-----GINVKEW-DDLAHWFDTH------------------------------ 992 (1453)
T ss_pred HHHHHHHHHHHHHhccceeeeeeEeee-----CCCHHHH-HHHHHHHHHc------------------------------
Confidence 578899999999999999999999874 4455553 3332222221
Q ss_pred CCCCcEEEEEEEEeCCCCH-------HHHHHHHHHHHh------cCC----------CcEEEEeccCCCCCCC-------
Q 026472 154 RGKKIYVRLLLSIDRRETT-------EAAMETVKLALE------MRD----------LGVVGIDLSGNPTKGE------- 203 (238)
Q Consensus 154 ~~~~i~vrlI~~~~R~~~~-------e~~~~~~~la~~------~~~----------~~vvG~dL~G~E~~~~------- 203 (238)
.=+.-.+|+++.+.|-.+. ..-.+++++... ..+ ..|+|||.+.+|+...
T Consensus 993 ~l~S~nvrW~IQiPRlY~~~k~~g~v~~F~~~L~nIF~PLFeat~~P~~hp~L~~FL~~v~gfDsVddEsk~e~~~~~~~ 1072 (1453)
T PTZ00310 993 GMASKHNKWMIQVPRVYKVFRAQNVIGSFGQYLDNIFQPLWEASLHPSKHPKFHYFLNHVSGFDSVDNEATIDLPFTDVS 1072 (1453)
T ss_pred CCCCCCceEEEecchhhHHHHhcCCcCCHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhCcceEEcCCcccccccCCCC
Confidence 1123368888888885432 112333343322 111 1599999999998621
Q ss_pred c-----------ccHHH-------HHHHHHH-cC---CCeeEecCCCCChhHHHhhC
Q 026472 204 W-----------TTFLP-------ALKFARE-QG---LQITLHCGEVHMSFECLLLL 238 (238)
Q Consensus 204 ~-----------~~f~~-------~f~~ar~-~g---l~~t~HAGE~~~~~~i~~~~ 238 (238)
| +.|+- .+...|+ .| +.++.||||+++|++|++++
T Consensus 1073 P~~W~~~~NPpy~Yy~YY~yaNi~~LN~~R~~rglnTf~~rpHAGEag~~~hI~~Al 1129 (1453)
T PTZ00310 1073 PWAWTSVENPPYNYYLYYLYANIRTLNEFRASRGFSTFALRPHCGESGSMDHLYGAF 1129 (1453)
T ss_pred hhhccCCCCCchhHhHHHHHHHHHHHHHHHHHCCCCCcCccccCCCCCCHHHHHHHH
Confidence 1 11111 2334443 35 57899999999999998864
No 19
>cd01292 metallo-dependent_hydrolases Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The family includes urease alpha, adenosine deaminase, phosphotriesterase dihydroorotases, allantoinases, hydantoinases, AMP-, adenine and cytosine deaminases, imidazolonepropionase, aryldialkylphosphatase, chlorohydrolases, formylmethanofuran dehydrogenases and others.
Probab=97.74 E-value=0.0011 Score=56.10 Aligned_cols=129 Identities=22% Similarity=0.230 Sum_probs=86.7
Q ss_pred hhcCChHHHHHHHHHHHHHHHhcCCeEEEEeecCCCCccCCCCHHHHHHHHHHHHHhhhhcccccccccccccccccccc
Q 026472 66 VLTTDHATVTRITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKN 145 (238)
Q Consensus 66 ~l~~~~~~~~~~~~~~~~~~a~dgV~Y~Elr~~P~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (238)
.-..++++++......++++.+.||.++..+.++..... + .+.++.+.+...+.
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~Gvttv~~~~~~~~~~~---~-~~~~~~~~~~~~~~---------------------- 78 (275)
T cd01292 25 AEELSPEDLYEDTLRALEALLAGGVTTVVDMGSTPPPTT---T-KAAIEAVAEAARAS---------------------- 78 (275)
T ss_pred ccccCHHHHHHHHHHHHHHHHhcCceEEEeeEeecCccc---c-chHHHHHHHHHHHh----------------------
Confidence 446678889999999999999999999999877543211 1 23345555554421
Q ss_pred ccccccCCCCCCcEEEEEEEEeCCCCHH---HHHHHHHHHHhcCCCcEEEEeccCCCCCC--CcccHHHHHHHHHHcCCC
Q 026472 146 MNDACNGTRGKKIYVRLLLSIDRRETTE---AAMETVKLALEMRDLGVVGIDLSGNPTKG--EWTTFLPALKFAREQGLQ 220 (238)
Q Consensus 146 ~~~~~~~~~~~~i~vrlI~~~~R~~~~e---~~~~~~~la~~~~~~~vvG~dL~G~E~~~--~~~~f~~~f~~ar~~gl~ 220 (238)
+ |+.+.++.++.+..++. ......+........+++|+++.+.+... +...+.++++.|++.|++
T Consensus 79 --------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 148 (275)
T cd01292 79 --------A--GIRVVLGLGIPGVPAAVDEDAEALLLELLRRGLELGAVGLKLAGPYTATGLSDESLRRVLEEARKLGLP 148 (275)
T ss_pred --------c--CeeeEEeccCCCCccccchhHHHHHHHHHHHHHhcCCeeEeeCCCCCCCCCCcHHHHHHHHHHHHcCCe
Confidence 1 56666656665543311 11112222222222469999999888754 668899999999999999
Q ss_pred eeEecCCCCC
Q 026472 221 ITLHCGEVHM 230 (238)
Q Consensus 221 ~t~HAGE~~~ 230 (238)
+++|++|...
T Consensus 149 i~~H~~~~~~ 158 (275)
T cd01292 149 VVIHAGELPD 158 (275)
T ss_pred EEEeeCCccc
Confidence 9999999875
No 20
>PRK09356 imidazolonepropionase; Validated
Probab=97.71 E-value=0.0035 Score=57.76 Aligned_cols=128 Identities=10% Similarity=0.070 Sum_probs=74.7
Q ss_pred CChHHHHHHHHHHHHHHHhcCCeEEEEeecCCCCccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccc
Q 026472 69 TDHATVTRITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMND 148 (238)
Q Consensus 69 ~~~~~~~~~~~~~~~~~a~dgV~Y~Elr~~P~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (238)
.+++++...+...+.++.+.||.+++.+... +++.+.... +.++++++.
T Consensus 113 ~~~e~~~~~a~~~~~~~l~~GvTtv~~~~~~------~~~~~~~~~-~~~~~~~~~------------------------ 161 (406)
T PRK09356 113 ASEEELFAQALPRLDALLAEGVTTVEIKSGY------GLDLETELK-MLRVARRLG------------------------ 161 (406)
T ss_pred CCHHHHHHHHHHHHHHHHhcCceEEEeeccC------CCCHHHHHH-HHHHHHHHh------------------------
Confidence 4677888999999999999999999865421 234333322 344454432
Q ss_pred cccCCCCCCcEEEEEEEEeCCCCH------HH-HHHHHHHHHhc--CCCcEEEEeccCCCCCCCcccHHHHHHHHHHcCC
Q 026472 149 ACNGTRGKKIYVRLLLSIDRRETT------EA-AMETVKLALEM--RDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGL 219 (238)
Q Consensus 149 ~~~~~~~~~i~vrlI~~~~R~~~~------e~-~~~~~~la~~~--~~~~vvG~dL~G~E~~~~~~~f~~~f~~ar~~gl 219 (238)
.+.++.+...+...+..++ .. .....+.+.+. ..+.+.+++..+.+...++..+..+++.|++.|+
T Consensus 162 -----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~A~~~g~ 236 (406)
T PRK09356 162 -----EEHPVDVVTTFLGAHAVPPEYKGRPDAYIDLVCEEMLPAVAEEGLADAVDVFCETGAFSVEQSERVLEAAKALGL 236 (406)
T ss_pred -----hhCCCceEeeeeecccCCccccCCHHHHHHHHHHHHhHHHHhcCCcceEEEEecCCCCCHHHHHHHHHHHHHCCC
Confidence 1223433322221111111 11 11111111111 1234666666665656677889999999999999
Q ss_pred CeeEecCCCCChh
Q 026472 220 QITLHCGEVHMSF 232 (238)
Q Consensus 220 ~~t~HAGE~~~~~ 232 (238)
++.+|++|..+..
T Consensus 237 ~v~~H~~~~~~~~ 249 (406)
T PRK09356 237 PVKIHAEQLSNLG 249 (406)
T ss_pred CEEEEEecccCCC
Confidence 9999999866443
No 21
>PRK08393 N-ethylammeline chlorohydrolase; Provisional
Probab=97.65 E-value=0.0012 Score=61.63 Aligned_cols=131 Identities=11% Similarity=0.022 Sum_probs=74.3
Q ss_pred CCHHHHHHHhHHHHhhcCChHHHHHHHHHHHHHHHhcCC-eEEEEeecCCCCccCCCCHHHHHHHHHHHHHhhhhccccc
Q 026472 52 RSLHEVFKLFDLIHVLTTDHATVTRITQEVVEDFASENI-VYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDF 130 (238)
Q Consensus 52 ~~l~~f~~~f~~~~~l~~~~~~~~~~~~~~~~~~a~dgV-~Y~Elr~~P~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~ 130 (238)
.+|.+|++.|.+.....-++++++..++..+.++.+.|+ .++|....| +++.++..+
T Consensus 75 ~~l~~~l~~~~~~~~~~~~~~~~~~~a~~~~~e~l~~GvTtv~d~~~~~--------------~~~~~a~~~-------- 132 (424)
T PRK08393 75 VPLMEWLQNYIWPRERKLKRKDIYWGAYLGLLEMIKSGTTTFVDMYFHM--------------EEVAKATLE-------- 132 (424)
T ss_pred CCHHHHHHhhhccccccCCHHHHHHHHHHHHHHHHhcCceEEeccccCH--------------HHHHHHHHH--------
Confidence 356677765543333334678899999999999999999 777775322 223333322
Q ss_pred cccccccccccccccccccccCCCCCCcEEEEEEEEeCCCCHHHHHHHHHHHHh----cC--CCcEEEEecc-CCCCCCC
Q 026472 131 ASRSIDVRRPVNTKNMNDACNGTRGKKIYVRLLLSIDRRETTEAAMETVKLALE----MR--DLGVVGIDLS-GNPTKGE 203 (238)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vrlI~~~~R~~~~e~~~~~~~la~~----~~--~~~vvG~dL~-G~E~~~~ 203 (238)
.|+...+.+++.+..+++...+.++.+.+ ++ ....+...++ ..+...+
T Consensus 133 -------------------------~G~r~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~p~~~~~~s 187 (424)
T PRK08393 133 -------------------------VGLRGYLSYGMVDLGDEEKREKEIKETEKLMEFIEKLNSPRVHFVFGPHAPYTCS 187 (424)
T ss_pred -------------------------hCCeEEEeceEecCCCccchHHHHHHHHHHHHHHhcCCCCceEEEEeCCcCCcCC
Confidence 25544444444443333222222222222 11 1222333222 1121234
Q ss_pred cccHHHHHHHHHHcCCCeeEecCCCC
Q 026472 204 WTTFLPALKFAREQGLQITLHCGEVH 229 (238)
Q Consensus 204 ~~~f~~~f~~ar~~gl~~t~HAGE~~ 229 (238)
+..+..+++.|++.|+++++|++|..
T Consensus 188 ~~~l~~~~~~A~~~g~~v~~H~~e~~ 213 (424)
T PRK08393 188 LALLKWVREKAREWNKLITIHLSETM 213 (424)
T ss_pred HHHHHHHHHHHHHcCCcEEEEeCCCH
Confidence 56778899999999999999999975
No 22
>cd01298 ATZ_TRZ_like TRZ/ATZ family contains enzymes from the atrazine degradation pathway and related hydrolases. Atrazine, a chlorinated herbizide, can be catabolized by a variety of different bacteria. The first three steps of the atrazine dehalogenation pathway are catalyzed by atrazine chlorohydrolase (AtzA), hydroxyatrazine ethylaminohydrolase (AtzB), and N-isopropylammelide N-isopropylaminohydrolase (AtzC). All three enzymes belong to the superfamily of metal dependent hydrolases. AtzA and AtzB, beside other related enzymes are represented in this CD.
Probab=97.64 E-value=0.0014 Score=59.97 Aligned_cols=131 Identities=18% Similarity=0.047 Sum_probs=77.2
Q ss_pred CHHHHHHHhHHHHhhcCChHHHHHHHHHHHHHHHhcCCeE-EEEeecCCCCccCCCCHHHHHHHHHHHHHhhhhcccccc
Q 026472 53 SLHEVFKLFDLIHVLTTDHATVTRITQEVVEDFASENIVY-LELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFA 131 (238)
Q Consensus 53 ~l~~f~~~f~~~~~l~~~~~~~~~~~~~~~~~~a~dgV~Y-~Elr~~P~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~ 131 (238)
++.+|++.+........++++++..++..++++.+.||.. .+....|. +...++..+
T Consensus 78 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~-------------~~~~~~~~~--------- 135 (411)
T cd01298 78 PLMEWLKDLIWPLERLLTEEDVYLGALLALAEMIRSGTTTFADMYFFYP-------------DAVAEAAEE--------- 135 (411)
T ss_pred CHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHHHHhcCccEEECccccch-------------HHHHHHHHH---------
Confidence 3666777665444556778899999999999999999964 44332221 122223221
Q ss_pred ccccccccccccccccccccCCCCCCcEEEEEEEEeCCCCH------HHHHHHHHHHHhcCC---Cc-EEEEeccCCCCC
Q 026472 132 SRSIDVRRPVNTKNMNDACNGTRGKKIYVRLLLSIDRRETT------EAAMETVKLALEMRD---LG-VVGIDLSGNPTK 201 (238)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~vrlI~~~~R~~~~------e~~~~~~~la~~~~~---~~-vvG~dL~G~E~~ 201 (238)
.|+.+.+..++++..+. ....+..++..++.. +. .+++++.+.+ .
T Consensus 136 ------------------------~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~-~ 190 (411)
T cd01298 136 ------------------------LGIRAVLGRGIMDLGTEDVEETEEALAEAERLIREWHGAADGRIRVALAPHAPY-T 190 (411)
T ss_pred ------------------------hCCeEEEEcceecCCCcccccHHHHHHHHHHHHHHhcCCCCCceEEEEeCCCCc-c
Confidence 24444444444443221 122222333323221 22 3455544332 3
Q ss_pred CCcccHHHHHHHHHHcCCCeeEecCCCCC
Q 026472 202 GEWTTFLPALKFAREQGLQITLHCGEVHM 230 (238)
Q Consensus 202 ~~~~~f~~~f~~ar~~gl~~t~HAGE~~~ 230 (238)
.+...+..+++.|++.|+++++|++|...
T Consensus 191 ~~~~~l~~~~~~A~~~g~~v~~H~~e~~~ 219 (411)
T cd01298 191 CSDELLREVAELAREYGVPLHIHLAETED 219 (411)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEecCCHH
Confidence 45688999999999999999999998764
No 23
>cd01293 Bact_CD Bacterial cytosine deaminase and related metal-dependent hydrolases. Cytosine deaminases (CDs) catalyze the deamination of cytosine, producing uracil and ammonia. They play an important role in pyrimidine salvage. CDs are present in prokaryotes and fungi, but not mammalian cells. The bacterial enzymes, but not the fungal enzymes, are related to the adenosine deaminases (ADA). The bacterial enzymes are iron dependent and hexameric.
Probab=97.38 E-value=0.0016 Score=59.31 Aligned_cols=126 Identities=17% Similarity=0.185 Sum_probs=75.5
Q ss_pred cCChHHHHHHHHHHHHHHHhcCCeEEEEeecCCCCccCCCCHHHHHHHHHHHHHhhhhcccccccccccccccccccccc
Q 026472 68 TTDHATVTRITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMN 147 (238)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~a~dgV~Y~Elr~~P~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (238)
..++++++..+...+.++.+.||.+++..+++... .+. ..++++.+..++..
T Consensus 88 ~~t~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~~~--~~~---~~~~~~~~~~~~~~----------------------- 139 (398)
T cd01293 88 LLTAEDVKERAERALELAIAHGTTAIRTHVDVDPA--AGL---KALEALLELREEWA----------------------- 139 (398)
T ss_pred ccChHHHHHHHHHHHHHHHHcChhheeeeeccccc--ccc---hHHHHHHHHHHHhh-----------------------
Confidence 46788999999999999999999999877664321 111 11333333322210
Q ss_pred ccccCCCCCCcEEEEEEEEeCC--CCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCCCcccHHHHHHHHHHcCCCeeEec
Q 026472 148 DACNGTRGKKIYVRLLLSIDRR--ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHC 225 (238)
Q Consensus 148 ~~~~~~~~~~i~vrlI~~~~R~--~~~e~~~~~~~la~~~~~~~vvG~dL~G~E~~~~~~~f~~~f~~ar~~gl~~t~HA 225 (238)
..+... +.+..+. ...+.+.+.++.+.+...+.+.|++..+ ....++..+..+++.|++.|+++++|+
T Consensus 140 --------~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~-~~~~s~e~l~~~~~~A~~~g~~v~~H~ 209 (398)
T cd01293 140 --------DLIDLQ-IVAFPQHGLLSTPGGEELMREALKMGADVVGGIPPAE-IDEDGEESLDTLFELAQEHGLDIDLHL 209 (398)
T ss_pred --------ccceEE-EEeccCccccCCCCHHHHHHHHHHhCCCEEeCCCCCc-CCccHHHHHHHHHHHHHHhCCCCEEEe
Confidence 011111 1122221 1124566667777654333343454443 122345788899999999999999999
Q ss_pred CCCCCh
Q 026472 226 GEVHMS 231 (238)
Q Consensus 226 GE~~~~ 231 (238)
+|..++
T Consensus 210 ~e~~~~ 215 (398)
T cd01293 210 DETDDP 215 (398)
T ss_pred CCCCCc
Confidence 998753
No 24
>KOG1096 consensus Adenosine monophosphate deaminase [Nucleotide transport and metabolism]
Probab=96.57 E-value=0.011 Score=57.42 Aligned_cols=98 Identities=16% Similarity=0.245 Sum_probs=58.2
Q ss_pred hhcCChhhhccccCCCCCHHHHHHHHHHhc----------cCC-------------CCCch-hhhHHHh----cCCCCHH
Q 026472 4 FASMPKVELHAHLNGSIRDSTLLELARVLG----------EKG-------------VIVFS-DVEHVIM----KSDRSLH 55 (238)
Q Consensus 4 ~~~lPK~eLH~HL~Gsi~~~tl~~la~~~~----------~~~-------------~~~~~-~~~~~~~----~~~~~l~ 55 (238)
+...=|||.|+|+.||++---|++..+.-- +.| +..++ ++..|.. ..++.++
T Consensus 314 FYNvRKVDthih~SaCmnQkhLlrFIk~klr~epdrvV~~~~g~~lTLrevF~~l~L~~yDlsvd~ldvha~~~tfHrfd 393 (768)
T KOG1096|consen 314 FYNVRKVDTHIHASACMNQKHLLRFIKKKLRKEPDRVVIQRDGRKLTLREVFKSLGLTAYDLSVDTLDVHADRNTFHRFD 393 (768)
T ss_pred ccccchhcchhhHhhhcCHHHHHHHHHHHhhcCCceEEEecCCceeeHHHHHHHcCCceeccchhHHHhhhchhhhhccc
Confidence 346679999999999999999998766510 011 00011 1222211 1122233
Q ss_pred HHHH------------HhHHHHhhcCChHHHHHHHHHHHHHHHhcCCeEEEEeecCCCC
Q 026472 56 EVFK------------LFDLIHVLTTDHATVTRITQEVVEDFASENIVYLELRTTPKRN 102 (238)
Q Consensus 56 ~f~~------------~f~~~~~l~~~~~~~~~~~~~~~~~~a~dgV~Y~Elr~~P~~~ 102 (238)
.|.. .|-.....++ -+=+.+++.+++-++-..--+++|.|.+...+
T Consensus 394 kfn~Kynp~g~s~LR~iFLktDNyI~-GeYlAei~Kev~~dleeSKYQ~ae~rlsiygr 451 (768)
T KOG1096|consen 394 KFNAKYNPVGESRLREIFLKTDNYIN-GEYLAEILKEVLSDLEESKYQLAEPRLSIYGR 451 (768)
T ss_pred hhhhhcCCccHHHHHHHHHhhccccc-hhhHHHHHHHHHhhHHHhhhhhcceeEEEeee
Confidence 3322 3332333332 23468888999999888888999999987643
No 25
>PRK07583 cytosine deaminase-like protein; Validated
Probab=95.90 E-value=0.13 Score=48.08 Aligned_cols=28 Identities=29% Similarity=0.443 Sum_probs=24.9
Q ss_pred ccHHHHHHHHHHcCCCeeEecCCCCChh
Q 026472 205 TTFLPALKFAREQGLQITLHCGEVHMSF 232 (238)
Q Consensus 205 ~~f~~~f~~ar~~gl~~t~HAGE~~~~~ 232 (238)
..+..+|+.|++.|+++.+|++|...+.
T Consensus 212 ~~l~~i~~lA~~~G~~v~vH~~E~~~~~ 239 (438)
T PRK07583 212 AQLDRLFRLARERGLDLDLHVDETGDPA 239 (438)
T ss_pred HHHHHHHHHHHHhCCCcEEeECCCCCch
Confidence 6788899999999999999999987653
No 26
>cd01313 Met_dep_hydrolase_E Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=95.62 E-value=1.8 Score=40.20 Aligned_cols=126 Identities=12% Similarity=0.103 Sum_probs=72.0
Q ss_pred CChHHHHHHHHHHHHHHHhcCCeEEEEeecCC-CCccCCC-CHHHHHHHHHHHHHhhhhccccccccccccccccccccc
Q 026472 69 TDHATVTRITQEVVEDFASENIVYLELRTTPK-RNESIGM-SKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNM 146 (238)
Q Consensus 69 ~~~~~~~~~~~~~~~~~a~dgV~Y~Elr~~P~-~~~~~~~-~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (238)
-++++++..++..+.++.+.|+..+.-..... .....++ ...+..+++.++..+
T Consensus 84 ~t~e~~~~~a~~~~~e~l~~G~Ttv~d~~~~~~~~~~~~~~~~~~~~~a~~~a~~~------------------------ 139 (418)
T cd01313 84 LTPEQIEAIARQLYIEMLLAGITAVGEFHYVHHDPDGTPYADPAELAQRVIAAASD------------------------ 139 (418)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCEEEEeeeeccCCCCCccCChhhhHHHHHHHHHH------------------------
Confidence 47889999999999999999998887644211 1111111 233444556555543
Q ss_pred cccccCCCCCCcEEEEEEEEe-CC----CC-----------HHHHHHHHHHHHh-cC--CCcEEEEeccCCCCCCCcccH
Q 026472 147 NDACNGTRGKKIYVRLLLSID-RR----ET-----------TEAAMETVKLALE-MR--DLGVVGIDLSGNPTKGEWTTF 207 (238)
Q Consensus 147 ~~~~~~~~~~~i~vrlI~~~~-R~----~~-----------~e~~~~~~~la~~-~~--~~~vvG~dL~G~E~~~~~~~f 207 (238)
.|+.+.+...++ +. .+ .+...+.++.++. .+ +...+|+...+. ...++..+
T Consensus 140 ---------~GiR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~s~e~l 209 (418)
T cd01313 140 ---------AGIGITLLPVLYARAGFGGPAPNPGQRRFINGYEDFLGLLEKALRAVKEHAAARIGVAPHSL-RAVPAEQL 209 (418)
T ss_pred ---------hCCeEEeeeeEEeccCCCCCCCchhhhhhcccHHHHHHHHHHHhhhhccCCceEEEEccCCC-CCCCHHHH
Confidence 355544432222 11 11 1122222322221 12 223556655543 23456778
Q ss_pred HHHHHHHHHcCCCeeEecCCCC
Q 026472 208 LPALKFAREQGLQITLHCGEVH 229 (238)
Q Consensus 208 ~~~f~~ar~~gl~~t~HAGE~~ 229 (238)
..+++.|++ |+++.+|++|..
T Consensus 210 ~~~~~~a~~-g~~i~~H~~e~~ 230 (418)
T cd01313 210 AALAALASE-KAPVHIHLAEQP 230 (418)
T ss_pred HHHHHHHhc-CCceEEEeCCCH
Confidence 889999999 999999999864
No 27
>PRK07213 chlorohydrolase; Provisional
Probab=95.35 E-value=0.23 Score=45.47 Aligned_cols=114 Identities=15% Similarity=0.106 Sum_probs=66.6
Q ss_pred CChHHHHHHHHHHHHHHHhcCCeE-EEEeecCCCCccCCCCHHHHHHHHHHHHHhhhhcccccccccccccccccccccc
Q 026472 69 TDHATVTRITQEVVEDFASENIVY-LELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMN 147 (238)
Q Consensus 69 ~~~~~~~~~~~~~~~~~a~dgV~Y-~Elr~~P~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (238)
.++++++..++..+.++.+-|+.- .+.. ..+. ..++++.++..
T Consensus 91 ~~~~~~~~~a~~~~~e~l~~G~Ttv~D~~-------~~~~---~~~~~~~~a~~-------------------------- 134 (375)
T PRK07213 91 CSDKELVEGMKEGLYDMYNNGIKAFCDFR-------EGGI---KGINLLKKASS-------------------------- 134 (375)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCeEEEEhh-------hcCh---hHHHHHHHHHH--------------------------
Confidence 478889999999999999999954 2221 0111 11233333321
Q ss_pred ccccCCCCCCcEEEEEEEEeCCCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCCCcccHHHHHHHHHHcCCCeeEecCC
Q 026472 148 DACNGTRGKKIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGE 227 (238)
Q Consensus 148 ~~~~~~~~~~i~vrlI~~~~R~~~~e~~~~~~~la~~~~~~~vvG~dL~G~E~~~~~~~f~~~f~~ar~~gl~~t~HAGE 227 (238)
+.++.+.+ ++......++...+.++..++. ..|+++.+... .++..+..+++.|++.|+++++|++|
T Consensus 135 -------~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~----~~g~~~~~~~~-~s~~~l~~~~~~A~~~g~~v~~H~~e 201 (375)
T PRK07213 135 -------DLPIKPII-LGRPTEADENELKKEIREILKN----SDGIGLSGANE-YSDEELKFICKECKREKKIFSIHAAE 201 (375)
T ss_pred -------cCCCceEE-ecCCCcccchhhHHHHHHHHHh----ccccccccccc-CCHHHHHHHHHHHHHcCCEEEEeeCC
Confidence 23444432 1111011233444444433332 34667666543 45678888999999999999999999
Q ss_pred CCCh
Q 026472 228 VHMS 231 (238)
Q Consensus 228 ~~~~ 231 (238)
+..+
T Consensus 202 ~~~e 205 (375)
T PRK07213 202 HKGS 205 (375)
T ss_pred chhH
Confidence 8643
No 28
>TIGR02022 hutF formiminoglutamate deiminase. In some species, histidine utilization goes via urocanate to glutamate in four step, the last being removal of formamide. This model describes an alternate fourth step, formiminoglutamate hydrolase, which leads to N-formyl-L-glutamate. This product may be acted on by formylglutamate amidohydrolase (TIGR02017) and bypass glutamate as a product during its degradation. Alternatively, removal of formate (by EC 3.5.1.68) would yield glutamate.
Probab=95.30 E-value=1 Score=42.43 Aligned_cols=126 Identities=10% Similarity=0.103 Sum_probs=69.8
Q ss_pred CChHHHHHHHHHHHHHHHhcCCeEEEEeecCCC-CccCCCC-HHHHHHHHHHHHHhhhhccccccccccccccccccccc
Q 026472 69 TDHATVTRITQEVVEDFASENIVYLELRTTPKR-NESIGMS-KRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNM 146 (238)
Q Consensus 69 ~~~~~~~~~~~~~~~~~a~dgV~Y~Elr~~P~~-~~~~~~~-~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (238)
-++++++..++..+.++.+.|+..+.-...... ....+++ ..+.++++.++.++
T Consensus 93 ~t~e~~~~~a~~~~~e~l~~G~Ttv~d~~~~~~~~~~~~~~~~~~~~~a~~~a~~e------------------------ 148 (455)
T TIGR02022 93 LTPEQLQAIARQLYVEMLEAGFTRVGEFHYLHHAPDGTPYADPAEMAERIAAAAAD------------------------ 148 (455)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCEEEeeeeecccCCCccccchhhhHHHHHHHHHH------------------------
Confidence 578899999999999999999988876543211 0111221 22335666666654
Q ss_pred cccccCCCCCCcEEEEEEEEe-CC----C-----------CHHHHHHHHHHHHh-c--CCCcEEEEeccCCCCCCCcccH
Q 026472 147 NDACNGTRGKKIYVRLLLSID-RR----E-----------TTEAAMETVKLALE-M--RDLGVVGIDLSGNPTKGEWTTF 207 (238)
Q Consensus 147 ~~~~~~~~~~~i~vrlI~~~~-R~----~-----------~~e~~~~~~~la~~-~--~~~~vvG~dL~G~E~~~~~~~f 207 (238)
.|+.+-+...+. +. . .++...+.++...+ + .+...+|+...+... .++..+
T Consensus 149 ---------~G~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~s~e~l 218 (455)
T TIGR02022 149 ---------AGIGLTLLPVFYAHSGFGGAAPNPGQRRFIHDVERFARLVEVLRRELAAQPAAVLGLAPHSLRA-VTPEQL 218 (455)
T ss_pred ---------hCCeEEeeeeeeecCCCCCCCCcccchhhccCHHHHHHHHHHHHHHhccCCceEEEEecCCCCc-CCHHHH
Confidence 244433322211 10 1 11222222222221 1 123455665554332 345667
Q ss_pred HHHHHHHHHcCCCeeEecCCCC
Q 026472 208 LPALKFAREQGLQITLHCGEVH 229 (238)
Q Consensus 208 ~~~f~~ar~~gl~~t~HAGE~~ 229 (238)
..+++ |++.|++++.|++|+.
T Consensus 219 ~~~~~-a~~~g~~v~~H~~e~~ 239 (455)
T TIGR02022 219 AAVLQ-ASDRQAPVHIHVAEQQ 239 (455)
T ss_pred HHHHH-HHhCCCceEEEECCCh
Confidence 77777 8889999999999963
No 29
>PRK06687 chlorohydrolase; Validated
Probab=95.13 E-value=0.75 Score=42.64 Aligned_cols=28 Identities=18% Similarity=0.333 Sum_probs=24.3
Q ss_pred CcccHHHHHHHHHHcCCCeeEecCCCCC
Q 026472 203 EWTTFLPALKFAREQGLQITLHCGEVHM 230 (238)
Q Consensus 203 ~~~~f~~~f~~ar~~gl~~t~HAGE~~~ 230 (238)
++..+..+++.|++.|+++++|++|...
T Consensus 194 s~e~l~~~~~~A~~~g~~i~~H~~e~~~ 221 (419)
T PRK06687 194 SRDLLEASLEMAKELNIPLHVHVAETKE 221 (419)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEeCCCHH
Confidence 4567888999999999999999999763
No 30
>PRK05985 cytosine deaminase; Provisional
Probab=95.09 E-value=0.24 Score=45.55 Aligned_cols=125 Identities=14% Similarity=0.150 Sum_probs=66.8
Q ss_pred cCChHHHHHHHHHHHHHHHhcCCeEEEEeec--CCCCccCCCCHHHHHHHHHHHHHhhhhcccccccccccccccccccc
Q 026472 68 TTDHATVTRITQEVVEDFASENIVYLELRTT--PKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKN 145 (238)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~a~dgV~Y~Elr~~--P~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (238)
..+.++++.-+...+.++.+.|+.++=-.++ |.. ++. . ++++.+..+..+
T Consensus 90 ~~~~~~~~~~a~~~~~~~l~~G~t~vr~~~~~~~~~----~~~--~-~~~~~~~~~~~~--------------------- 141 (391)
T PRK05985 90 AASGHPAAERALALARAAAAAGTTAMRSHVDVDPDA----GLR--H-LEAVLAARETLR--------------------- 141 (391)
T ss_pred ccchhHHHHHHHHHHHHHHhcCcceEEeeEccCCCc----ccc--h-HHHHHHHHHHhh---------------------
Confidence 4466678888889999999999999733322 211 111 1 233333332211
Q ss_pred ccccccCCCCCCcEEEEEEEEeCC-CCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCCCcccHHHHHHHHHHcCCCeeEe
Q 026472 146 MNDACNGTRGKKIYVRLLLSIDRR-ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLH 224 (238)
Q Consensus 146 ~~~~~~~~~~~~i~vrlI~~~~R~-~~~e~~~~~~~la~~~~~~~vvG~dL~G~E~~~~~~~f~~~f~~ar~~gl~~t~H 224 (238)
..+...++....-. .+.....+.++.+.+...+.+.|++..... ..+...+..+++.|++.|+++.+|
T Consensus 142 ----------~~~~~~~v~~~~~g~~~~~~~~~ll~~~l~~g~~~~gg~~p~~~~-~~~~~~l~~~~~~A~~~g~~i~~H 210 (391)
T PRK05985 142 ----------GLIDIQIVAFPQSGVLSRPGTAELLDAALRAGADVVGGLDPAGID-GDPEGQLDIVFGLAERHGVGIDIH 210 (391)
T ss_pred ----------CcccEEEEeccCccccCCcCHHHHHHHHHHcCCCEEeCCCCCCcC-CCHHHHHHHHHHHHHHhCCCcEEe
Confidence 12333333221111 111112345555555433334344322211 122366788999999999999999
Q ss_pred cCCCCCh
Q 026472 225 CGEVHMS 231 (238)
Q Consensus 225 AGE~~~~ 231 (238)
..|+..+
T Consensus 211 v~e~~d~ 217 (391)
T PRK05985 211 LHEPGEL 217 (391)
T ss_pred eCCCCCc
Confidence 9998764
No 31
>PRK06886 hypothetical protein; Validated
Probab=95.06 E-value=0.57 Score=42.51 Aligned_cols=141 Identities=11% Similarity=0.056 Sum_probs=80.8
Q ss_pred CHHHHHHHhHHHHhhcCChHHHHHHHHHHHHHHHhcCCeEEEEeecCCCCccCCCCHHHHHHHHHHHHHhhhhccccccc
Q 026472 53 SLHEVFKLFDLIHVLTTDHATVTRITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFAS 132 (238)
Q Consensus 53 ~l~~f~~~f~~~~~l~~~~~~~~~~~~~~~~~~a~dgV~Y~Elr~~P~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~ 132 (238)
+|.+=++.|..... ..+.+++++=+..+++.+.+.|+.|+=....- ....|+. -++++.+.-++.+
T Consensus 47 ~l~e~i~~~~~~k~-~~t~~dv~~Ra~~~l~~~~~~Gtt~iRtHvdv--d~~~~l~---~~~a~~~~r~~~~-------- 112 (329)
T PRK06886 47 NLQQKWDLVDEVKR-NSTVEDYYARFSQAIELMISQGVTAFGTFVDI--DPICEDR---AIIAAHKAREVYK-------- 112 (329)
T ss_pred CHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHcCcccEeeeecc--CCCcccc---HHHHHHHHHHHhc--------
Confidence 45544444444333 33566888888899999999999998555432 1112332 2555555554432
Q ss_pred cccccccccccccccccccCCCCCCcEEEEEEEEeCC-CCHHHHHHHHHHHHhcCCCcEEEEeccCCCC-CCCcccHHHH
Q 026472 133 RSIDVRRPVNTKNMNDACNGTRGKKIYVRLLLSIDRR-ETTEAAMETVKLALEMRDLGVVGIDLSGNPT-KGEWTTFLPA 210 (238)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~i~vrlI~~~~R~-~~~e~~~~~~~la~~~~~~~vvG~dL~G~E~-~~~~~~f~~~ 210 (238)
.-|.+.++..-.-+ ..+ ...+.++.+.+. -+.+-|+.-....+ ..+......+
T Consensus 113 -----------------------~~idlq~vafPq~g~~~~-~~~~l~~~al~~-advvGGiP~~~~~~~~~~~e~l~~~ 167 (329)
T PRK06886 113 -----------------------HDIILKFANQTLKGVIEP-TAKKWFDIGSEM-VDMIGGLPYRDELDYGRGLEAMDIL 167 (329)
T ss_pred -----------------------CcceEEEEecChhhccCc-cHHHHHHHHHHh-CCEEeCccCCcCCCCCCCHHHHHHH
Confidence 12333333210000 111 234666777666 45566663221111 1223557789
Q ss_pred HHHHHHcCCCeeEecCCCCChh
Q 026472 211 LKFAREQGLQITLHCGEVHMSF 232 (238)
Q Consensus 211 f~~ar~~gl~~t~HAGE~~~~~ 232 (238)
|+.|++.|+++.+|..|+..+.
T Consensus 168 ~~lA~~~g~~Id~Hlde~~~~~ 189 (329)
T PRK06886 168 LDTAKSLGKMVHVHVDQFNTPK 189 (329)
T ss_pred HHHHHHcCCCeEEeECCCCchh
Confidence 9999999999999999988763
No 32
>PRK06380 metal-dependent hydrolase; Provisional
Probab=95.05 E-value=0.76 Score=42.54 Aligned_cols=39 Identities=21% Similarity=0.229 Sum_probs=29.7
Q ss_pred EEEEeccCCCCCCCcccHHHHHHHHHHcCCCeeEecCCCC
Q 026472 190 VVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEVH 229 (238)
Q Consensus 190 vvG~dL~G~E~~~~~~~f~~~f~~ar~~gl~~t~HAGE~~ 229 (238)
.++++..|.. ..+...+..+++.|++.|+++++|+.|..
T Consensus 172 ~~~~~~~~~~-~~s~e~l~~~~~~A~~~g~~v~~H~~e~~ 210 (418)
T PRK06380 172 TPSIGVQGIY-VANDETYLKAKEIAEKYDTIMHMHLSETR 210 (418)
T ss_pred EEEEECCCCc-cCCHHHHHHHHHHHHHcCCCEEEEeCCcH
Confidence 4466555543 33557788899999999999999999964
No 33
>cd01305 archeal_chlorohydrolases Predicted chlorohydrolases. These metallo-dependent hydrolases from archea are part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. They have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. Some members of this subgroup are predicted to be chlorohyrolases.
Probab=94.95 E-value=1.2 Score=38.47 Aligned_cols=24 Identities=21% Similarity=0.372 Sum_probs=22.5
Q ss_pred HHHHHHHHHHcCCCeeEecCCCCC
Q 026472 207 FLPALKFAREQGLQITLHCGEVHM 230 (238)
Q Consensus 207 f~~~f~~ar~~gl~~t~HAGE~~~ 230 (238)
+..+++.|++.|+++++|++|...
T Consensus 127 l~~~~~~A~~~g~~v~~H~~e~~~ 150 (263)
T cd01305 127 LEDILELLRRRGKLFAIHASETRE 150 (263)
T ss_pred HHHHHHHHHHCCCeeEEecCCCCC
Confidence 899999999999999999999865
No 34
>PRK06846 putative deaminase; Validated
Probab=94.86 E-value=0.62 Score=43.18 Aligned_cols=53 Identities=11% Similarity=0.144 Sum_probs=34.7
Q ss_pred HHHHHHHHHhcCCCcEEEEeccCCCC--CCCcccHHHHHHHHHHcCCCeeEecCCCCC
Q 026472 175 AMETVKLALEMRDLGVVGIDLSGNPT--KGEWTTFLPALKFAREQGLQITLHCGEVHM 230 (238)
Q Consensus 175 ~~~~~~la~~~~~~~vvG~dL~G~E~--~~~~~~f~~~f~~ar~~gl~~t~HAGE~~~ 230 (238)
..+.++.+.+..-+ ++| ++ +... ..+...+..+++.|++.|+++..|..|...
T Consensus 177 ~~~lL~~al~~Ga~-~i~-gl-~p~~~~~~~~~~l~~~~~lA~~~g~~v~~Hv~e~~~ 231 (410)
T PRK06846 177 SEPLMREAMKMGAH-LVG-GV-DPASVDGAIEKSLDTMFQIAVDFNKGVDIHLHDTGP 231 (410)
T ss_pred HHHHHHHHHHcCCC-EEe-CC-CCccCCcCHHHHHHHHHHHHHHhCCCcEEEECCCCC
Confidence 34566666665333 443 22 1111 223356888999999999999999998774
No 35
>TIGR03314 Se_ssnA putative selenium metabolism protein SsnA. Members of this protein family are found exclusively in genomes that contain putative set of labile selenium-dependent enzyme accessory proteins as well as homologs of a labile selenium-dependent purine hydroxylase. A mutant in this gene in Escherichia coli had improved stationary phase viability. The function is unknown.
Probab=94.85 E-value=0.85 Score=42.79 Aligned_cols=120 Identities=9% Similarity=-0.002 Sum_probs=64.0
Q ss_pred CChHHHHHHHHHHHHHHHhcCC-eEEEEeecCCCCccCCCCHHHHHHHHHHHHHhhhhcccccccccccccccccccccc
Q 026472 69 TDHATVTRITQEVVEDFASENI-VYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMN 147 (238)
Q Consensus 69 ~~~~~~~~~~~~~~~~~a~dgV-~Y~Elr~~P~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (238)
-++++++...+..+.++.+-|+ ..++...+|.... ...+++.++..+
T Consensus 100 ~~~e~~~~~a~~~~~e~l~~GtTt~~d~~~~~~~~~-------~~~~~~~~a~~~------------------------- 147 (441)
T TIGR03314 100 LTLEDVYYSGLICSLDAIKSGCTTVIDHHASPNAIT-------GSLSTIRKAADE------------------------- 147 (441)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCeEEEeccccccccc-------chHHHHHHHHHH-------------------------
Confidence 3577888888888889999999 4445544443211 114455555443
Q ss_pred ccccCCCCCCcEEEEEEEEe-CCCC--HHH-HHHHHHHHHhcCC--Cc--EEEEeccCCCCCCCcccHHHHHHHHHHcCC
Q 026472 148 DACNGTRGKKIYVRLLLSID-RRET--TEA-AMETVKLALEMRD--LG--VVGIDLSGNPTKGEWTTFLPALKFAREQGL 219 (238)
Q Consensus 148 ~~~~~~~~~~i~vrlI~~~~-R~~~--~e~-~~~~~~la~~~~~--~~--vvG~dL~G~E~~~~~~~f~~~f~~ar~~gl 219 (238)
.|+.+-+-+.++ +..+ ... ..+..++..++.. ++ -+++...+... -++..+..+.+.|++.|+
T Consensus 148 --------~GiR~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~p~~~~t-~s~~~l~~~~~lA~~~~~ 218 (441)
T TIGR03314 148 --------AGLRTMLCYETSDRDGGKEMQEGVEENIAFIKKSSGKEPYLVEAHIGAHAPFT-VSDAGLEMCREAVQATGR 218 (441)
T ss_pred --------hCCeEEEeeeeecCCCcccHHHHHHHHHHHHHHhccCCCCceEEEEecCCCCC-CCHHHHHHHHHHHHHcCC
Confidence 355443333322 2211 111 1122222222221 22 23444433332 234567777888999999
Q ss_pred CeeEecCCCC
Q 026472 220 QITLHCGEVH 229 (238)
Q Consensus 220 ~~t~HAGE~~ 229 (238)
+++.|.+|+.
T Consensus 219 ~i~~H~~E~~ 228 (441)
T TIGR03314 219 GFHIHVAEDI 228 (441)
T ss_pred CEEEEcCCCH
Confidence 9999999964
No 36
>PRK14085 imidazolonepropionase; Provisional
Probab=94.66 E-value=2.9 Score=38.31 Aligned_cols=43 Identities=16% Similarity=0.081 Sum_probs=32.7
Q ss_pred EeccCCCCCCCcccHHHHHHHHHHcCCCeeEecCCCCChhHHH
Q 026472 193 IDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEVHMSFECL 235 (238)
Q Consensus 193 ~dL~G~E~~~~~~~f~~~f~~ar~~gl~~t~HAGE~~~~~~i~ 235 (238)
+|+...+...++..+..+++.|++.|+++++|+++.++...++
T Consensus 195 idi~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~v~ 237 (382)
T PRK14085 195 IDVFCERGAFDEDQSRRVLTAGRAAGLGLRVHGNQLGPGPGVR 237 (382)
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHcCCCeEEEeCcccCChHHH
Confidence 4555555555678889999999999999999999876544343
No 37
>PRK09228 guanine deaminase; Provisional
Probab=94.44 E-value=1.3 Score=41.38 Aligned_cols=28 Identities=25% Similarity=0.110 Sum_probs=23.4
Q ss_pred CcccHHHHHHHHHHc-CCCeeEecCCCCC
Q 026472 203 EWTTFLPALKFAREQ-GLQITLHCGEVHM 230 (238)
Q Consensus 203 ~~~~f~~~f~~ar~~-gl~~t~HAGE~~~ 230 (238)
++..+..+++.|++. |++++.|.+|+..
T Consensus 209 s~~~l~~~~~lA~~~~~~~i~~Hl~E~~~ 237 (433)
T PRK09228 209 TPEQLEAAGALAREHPDVWIQTHLSENLD 237 (433)
T ss_pred CHHHHHHHHHHHHHCCCCceEEeecCChh
Confidence 346678888899997 9999999999764
No 38
>PRK07203 putative chlorohydrolase/aminohydrolase; Validated
Probab=94.29 E-value=0.96 Score=42.29 Aligned_cols=27 Identities=19% Similarity=0.122 Sum_probs=22.9
Q ss_pred cccHHHHHHHHHHcCCCeeEecCCCCC
Q 026472 204 WTTFLPALKFAREQGLQITLHCGEVHM 230 (238)
Q Consensus 204 ~~~f~~~f~~ar~~gl~~t~HAGE~~~ 230 (238)
+..+..+++.|++.|+++..|.+|+..
T Consensus 204 ~~~l~~~~~lA~~~g~~i~~H~~E~~~ 230 (442)
T PRK07203 204 DATLEKCREAVKETGRGYHIHVAEGIY 230 (442)
T ss_pred HHHHHHHHHHHHHcCCcEEEEecCChH
Confidence 356777888999999999999999764
No 39
>PRK06038 N-ethylammeline chlorohydrolase; Provisional
Probab=93.91 E-value=1.5 Score=40.89 Aligned_cols=27 Identities=22% Similarity=0.254 Sum_probs=23.3
Q ss_pred CcccHHHHHHHHHHcCCCeeEecCCCC
Q 026472 203 EWTTFLPALKFAREQGLQITLHCGEVH 229 (238)
Q Consensus 203 ~~~~f~~~f~~ar~~gl~~t~HAGE~~ 229 (238)
+...+..+++.|++.|+++.+|+.|..
T Consensus 188 s~e~l~~~~~~A~~~g~~v~~H~~e~~ 214 (430)
T PRK06038 188 SEEFLSKVKKLANKDGVGIHIHVLETE 214 (430)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEcCCCH
Confidence 446778889999999999999999975
No 40
>PRK08204 hypothetical protein; Provisional
Probab=93.69 E-value=2.6 Score=39.35 Aligned_cols=37 Identities=30% Similarity=0.569 Sum_probs=25.6
Q ss_pred EEEeccCCCCCCCcccHHHHHHHHHHcCCCeeEecCCC
Q 026472 191 VGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEV 228 (238)
Q Consensus 191 vG~dL~G~E~~~~~~~f~~~f~~ar~~gl~~t~HAGE~ 228 (238)
+|+...|.. ..+++.+..+++.|++.|+++.+|+.|.
T Consensus 188 ~~~~~~~~~-~~~~e~l~~~~~~A~~~g~~v~~H~~e~ 224 (449)
T PRK08204 188 LGLAIRGPE-FSSWEVARADFRLARELGLPISMHQGFG 224 (449)
T ss_pred EEEecCCcc-cCCHHHHHHHHHHHHHcCCcEEEEEcCC
Confidence 444444422 1234566788889999999999999875
No 41
>cd01303 GDEase Guanine deaminase (GDEase). Guanine deaminase is an aminohydrolase responsible for the conversion of guanine to xanthine and ammonia, the first step to utilize guanine as a nitrogen source. This reaction also removes the guanine base from the pool and therefore can play a role in the regulation of cellular GTP and the guanylate nucleotide pool.
Probab=93.58 E-value=3.9 Score=38.18 Aligned_cols=29 Identities=24% Similarity=0.131 Sum_probs=24.0
Q ss_pred CCcccHHHHHHHHHHcC-CCeeEecCCCCC
Q 026472 202 GEWTTFLPALKFAREQG-LQITLHCGEVHM 230 (238)
Q Consensus 202 ~~~~~f~~~f~~ar~~g-l~~t~HAGE~~~ 230 (238)
.+...+..+++.|++.| +++.+|+.|+..
T Consensus 205 ~s~e~l~~~~~~A~~~g~~~v~~H~~e~~~ 234 (429)
T cd01303 205 CSEELLAALGKLAKEHPDLHIQTHISENLD 234 (429)
T ss_pred CCHHHHHHHHHHHHHCCCCeEEEeeCCCHH
Confidence 34567888899999999 999999999653
No 42
>PRK12393 amidohydrolase; Provisional
Probab=93.55 E-value=2.7 Score=39.60 Aligned_cols=38 Identities=16% Similarity=0.058 Sum_probs=27.8
Q ss_pred EEeccCCCCCCCcccHHHHHHHHHHcCCCeeEecCCCC
Q 026472 192 GIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEVH 229 (238)
Q Consensus 192 G~dL~G~E~~~~~~~f~~~f~~ar~~gl~~t~HAGE~~ 229 (238)
++...+.....++..+..+++.|++.|+++++|++|+.
T Consensus 205 ~~~~~~~~~~~~~e~l~~~~~~a~~~g~~~~~H~~e~~ 242 (457)
T PRK12393 205 VVAPTTPTFSLPPELLREVARAARGMGLRLHSHLSETV 242 (457)
T ss_pred EEcCCCCCCCcCHHHHHHHHHHHHHcCCeEEEEeCCCH
Confidence 33333432234557788899999999999999999965
No 43
>PRK15493 5-methylthioadenosine/S-adenosylhomocysteine deaminase; Provisional
Probab=92.95 E-value=4 Score=38.17 Aligned_cols=27 Identities=15% Similarity=0.161 Sum_probs=23.3
Q ss_pred CcccHHHHHHHHHHcCCCeeEecCCCC
Q 026472 203 EWTTFLPALKFAREQGLQITLHCGEVH 229 (238)
Q Consensus 203 ~~~~f~~~f~~ar~~gl~~t~HAGE~~ 229 (238)
++..+..+++.|++.|+++.+|+.|+.
T Consensus 195 s~e~l~~~~~~A~~~g~~v~~H~~e~~ 221 (435)
T PRK15493 195 STELLEECARIAVENQTMVHIHLSETE 221 (435)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEeCCCH
Confidence 446788899999999999999999963
No 44
>TIGR02967 guan_deamin guanine deaminase. This model describes guanine deaminase, which hydrolyzes guanine to xanthine and ammonia. Xanthine can then be converted to urate by xanthine dehydrogenase, and urate subsequently degraded. In some bacteria, the guanine deaminase gene is found near the xdhABC genes for xanthine dehydrogenase. Non-homologous forms of guanine deaminase also exist, as well as distantly related forms outside the scope of this model.
Probab=92.84 E-value=3.7 Score=37.66 Aligned_cols=28 Identities=18% Similarity=0.125 Sum_probs=23.8
Q ss_pred CcccHHHHHHHHHHc-CCCeeEecCCCCC
Q 026472 203 EWTTFLPALKFAREQ-GLQITLHCGEVHM 230 (238)
Q Consensus 203 ~~~~f~~~f~~ar~~-gl~~t~HAGE~~~ 230 (238)
+...+..+++.|++. |+++++|+.|...
T Consensus 184 s~e~l~~~~~~A~~~~g~~v~~H~~e~~~ 212 (401)
T TIGR02967 184 SPEQLAAAGELAKEYPDVYVQTHLSENKD 212 (401)
T ss_pred cHHHHHHHHHHHHhCCCCeeEEEECCCch
Confidence 446788889999998 9999999999764
No 45
>PRK08203 hydroxydechloroatrazine ethylaminohydrolase; Reviewed
Probab=92.72 E-value=5.5 Score=37.27 Aligned_cols=42 Identities=17% Similarity=0.173 Sum_probs=30.9
Q ss_pred cEEEEeccCCC-CCCCcccHHHHHHHHHHcCCCeeEecCCCCC
Q 026472 189 GVVGIDLSGNP-TKGEWTTFLPALKFAREQGLQITLHCGEVHM 230 (238)
Q Consensus 189 ~vvG~dL~G~E-~~~~~~~f~~~f~~ar~~gl~~t~HAGE~~~ 230 (238)
..+.+.+++.- ...+...+..+++.|++.|+++.+|++|...
T Consensus 197 ~~i~~~~~~~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~e~~~ 239 (451)
T PRK08203 197 AMLRIALAPCSPFSVSRELMRESAALARRLGVRLHTHLAETLD 239 (451)
T ss_pred CeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEeCCCHH
Confidence 45666665432 2335577888999999999999999998754
No 46
>PRK09229 N-formimino-L-glutamate deiminase; Validated
Probab=92.45 E-value=5.4 Score=37.50 Aligned_cols=126 Identities=10% Similarity=0.066 Sum_probs=68.2
Q ss_pred CChHHHHHHHHHHHHHHHhcCCeEEEEeecCCC-CccCCC-CHHHHHHHHHHHHHhhhhccccccccccccccccccccc
Q 026472 69 TDHATVTRITQEVVEDFASENIVYLELRTTPKR-NESIGM-SKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNM 146 (238)
Q Consensus 69 ~~~~~~~~~~~~~~~~~a~dgV~Y~Elr~~P~~-~~~~~~-~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (238)
-++++++..++..+.++..-|+.-+.-...... .....+ +..+..+++.++.++
T Consensus 93 ~~~e~~~~~a~~~~~e~L~~G~Ttv~d~~~~~~~~~~~~~~~~~~~~~a~~~a~~e------------------------ 148 (456)
T PRK09229 93 LTPDQLEAIARQLYVEMLEAGYTSVGEFHYLHHDPDGTPYADPAEMALRIVAAARA------------------------ 148 (456)
T ss_pred CCHHHHHHHHHHHHHHHHhhCCcEEEeeeeeccCCCCCccCChHHHHHHHHHHHHH------------------------
Confidence 578889999999999999999977765432111 001111 222334566665543
Q ss_pred cccccCCCCCCcEEEEEEEE-eCC---------------CCHHHHHHHHHHHHh-cCC--CcEEEEeccCCCCCCCcccH
Q 026472 147 NDACNGTRGKKIYVRLLLSI-DRR---------------ETTEAAMETVKLALE-MRD--LGVVGIDLSGNPTKGEWTTF 207 (238)
Q Consensus 147 ~~~~~~~~~~~i~vrlI~~~-~R~---------------~~~e~~~~~~~la~~-~~~--~~vvG~dL~G~E~~~~~~~f 207 (238)
.|+.+-+...+ .+. ..++...+.++...+ +.. ..-+|+...+.. ..++..+
T Consensus 149 ---------~GiR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~s~e~l 218 (456)
T PRK09229 149 ---------AGIGLTLLPVLYAHSGFGGQPPNPGQRRFINDPDGFLRLLEALRRALAALPGARLGLAPHSLR-AVTPDQL 218 (456)
T ss_pred ---------cCCEEEeceeeeecCCCCCCCCchhhcccccCHHHHHHHHHHHHHhhcCCCceEEEEeCCCCC-CCCHHHH
Confidence 34443332111 110 011222222221122 222 223455554432 2355778
Q ss_pred HHHHHHHHHcCCCeeEecCCCC
Q 026472 208 LPALKFAREQGLQITLHCGEVH 229 (238)
Q Consensus 208 ~~~f~~ar~~gl~~t~HAGE~~ 229 (238)
..+++.| +.|+++.+|++|+.
T Consensus 219 ~~~~~~A-~~g~~i~~H~~e~~ 239 (456)
T PRK09229 219 AAVLALA-APDGPVHIHIAEQT 239 (456)
T ss_pred HHHHHHh-cCCCceEEEeCCCH
Confidence 8889999 99999999999864
No 47
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=92.14 E-value=2 Score=36.99 Aligned_cols=78 Identities=18% Similarity=0.207 Sum_probs=56.4
Q ss_pred CCCCcEEEEEEEEe-CCCCHHHHHHHHHHHHh-cCCCcEEEEeccCCCCCCCc--ccHHHHHHHHHHcCCCeeEecCCCC
Q 026472 154 RGKKIYVRLLLSID-RRETTEAAMETVKLALE-MRDLGVVGIDLSGNPTKGEW--TTFLPALKFAREQGLQITLHCGEVH 229 (238)
Q Consensus 154 ~~~~i~vrlI~~~~-R~~~~e~~~~~~~la~~-~~~~~vvG~dL~G~E~~~~~--~~f~~~f~~ar~~gl~~t~HAGE~~ 229 (238)
..+|+++++-+.+. |..+++ ...+++.... +.+..||+|+=-|-|...+- .-|...+..|++.++|+.+|.=...
T Consensus 60 ~~~Gl~~~vavGvHPr~iP~e-~~~~l~~L~~~l~~e~VvAiGEiGLe~~t~~E~evf~~QL~LA~e~dvPviVHTPr~n 138 (254)
T COG1099 60 EKAGLKLKVAVGVHPRAIPPE-LEEVLEELEELLSNEDVVAIGEIGLEEATDEEKEVFREQLELARELDVPVIVHTPRRN 138 (254)
T ss_pred HhhCceeeEEeccCCCCCCch-HHHHHHHHHhhcccCCeeEeeecccccCCHHHHHHHHHHHHHHHHcCCcEEEeCCCCc
Confidence 34688888766665 445665 4444444333 34567999999998887654 6688899999999999999987766
Q ss_pred Chh
Q 026472 230 MSF 232 (238)
Q Consensus 230 ~~~ 232 (238)
-++
T Consensus 139 K~e 141 (254)
T COG1099 139 KKE 141 (254)
T ss_pred chh
Confidence 554
No 48
>cd01312 Met_dep_hydrolase_D Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=91.73 E-value=7.8 Score=35.64 Aligned_cols=27 Identities=15% Similarity=0.118 Sum_probs=23.1
Q ss_pred CcccHHHHHHHHHHcCCCeeEecCCCC
Q 026472 203 EWTTFLPALKFAREQGLQITLHCGEVH 229 (238)
Q Consensus 203 ~~~~f~~~f~~ar~~gl~~t~HAGE~~ 229 (238)
+...+..+++.|++.|++++.|..|+.
T Consensus 161 s~e~l~~~~~lA~~~g~~i~~Hl~E~~ 187 (381)
T cd01312 161 HPELAQDLIDLAKKLNLPLSTHFLESK 187 (381)
T ss_pred CHHHHHHHHHHHHHcCCeEEEEecCcH
Confidence 446788888999999999999999964
No 49
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=91.61 E-value=2.8 Score=38.50 Aligned_cols=121 Identities=13% Similarity=0.095 Sum_probs=83.7
Q ss_pred HHHHHHHHHHhcCCeEEEEeecCCC---CccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCC
Q 026472 77 ITQEVVEDFASENIVYLELRTTPKR---NESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGT 153 (238)
Q Consensus 77 ~~~~~~~~~a~dgV~Y~Elr~~P~~---~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (238)
...+-++.+.+-|+..+-+-++-.. ...-+.+.++.++.+.+.++.+++
T Consensus 72 ~~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~---------------------------- 123 (363)
T TIGR02090 72 ALKKDIDKAIDCGVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKE---------------------------- 123 (363)
T ss_pred cCHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH----------------------------
Confidence 3445566777788887766544211 123467899999999999988752
Q ss_pred CCCCcEEEEEEEEeCCCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCCCcccHHHHHHHHHHc-CCCeeEecCCCCC
Q 026472 154 RGKKIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ-GLQITLHCGEVHM 230 (238)
Q Consensus 154 ~~~~i~vrlI~~~~R~~~~e~~~~~~~la~~~~~~~vvG~dL~G~E~~~~~~~f~~~f~~ar~~-gl~~t~HAGE~~~ 230 (238)
.|+.+.+-+.-.-..+++...++++.+.+...+.|+=-|.+|. ..|.++...++..++. ++++-+|+--+.|
T Consensus 124 --~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i~l~DT~G~---~~P~~v~~li~~l~~~~~~~l~~H~Hnd~G 196 (363)
T TIGR02090 124 --HGLIVEFSAEDATRTDIDFLIKVFKRAEEAGADRINIADTVGV---LTPQKMEELIKKLKENVKLPISVHCHNDFG 196 (363)
T ss_pred --cCCEEEEEEeecCCCCHHHHHHHHHHHHhCCCCEEEEeCCCCc---cCHHHHHHHHHHHhcccCceEEEEecCCCC
Confidence 3666665543222357888888888888776666777777773 3456777777777654 6899999988876
No 50
>PRK07572 cytosine deaminase; Validated
Probab=91.60 E-value=2 Score=39.98 Aligned_cols=43 Identities=7% Similarity=0.077 Sum_probs=29.9
Q ss_pred CHHHHHHHhHHHHhhcCChHHHHHHHHHHHHHHHhcCCeEEEEe
Q 026472 53 SLHEVFKLFDLIHVLTTDHATVTRITQEVVEDFASENIVYLELR 96 (238)
Q Consensus 53 ~l~~f~~~f~~~~~l~~~~~~~~~~~~~~~~~~a~dgV~Y~Elr 96 (238)
++.+.+..+..... ..++++++..+...++++.+.|+.++=-.
T Consensus 76 ~l~e~l~~~~~~~~-~~t~edl~~~a~~~~~e~l~~G~Ttvrd~ 118 (426)
T PRK07572 76 TLLEGIALWGELKP-LLTQEALVERALRYCDWAVARGLLAIRSH 118 (426)
T ss_pred CHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHcCcccEeec
Confidence 34444444432222 34788999999999999999999876443
No 51
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=90.68 E-value=6.3 Score=34.53 Aligned_cols=118 Identities=15% Similarity=0.037 Sum_probs=80.0
Q ss_pred HHHHHHHhcCCeEEEEeecCC--C-CccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCC
Q 026472 80 EVVEDFASENIVYLELRTTPK--R-NESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGK 156 (238)
Q Consensus 80 ~~~~~~a~dgV~Y~Elr~~P~--~-~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (238)
+-++.+..-|+..+-+-++-. . ....+.+.++.++.+.+.++.++ +.
T Consensus 75 ~di~~a~~~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~------------------------------~~ 124 (262)
T cd07948 75 DDARIAVETGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVK------------------------------SK 124 (262)
T ss_pred HHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHH------------------------------HC
Confidence 345666667888777655422 1 12346788999999999998874 24
Q ss_pred CcEEEEEEEEeCCCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCCCcccHHHHHHHHHHc-CCCeeEecCCCCC
Q 026472 157 KIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ-GLQITLHCGEVHM 230 (238)
Q Consensus 157 ~i~vrlI~~~~R~~~~e~~~~~~~la~~~~~~~vvG~dL~G~E~~~~~~~f~~~f~~ar~~-gl~~t~HAGE~~~ 230 (238)
|+.+++-+...-..+++...++++.+.+...+.|+=-|..|. ..|.+....+...++. ++++-+|+--+.|
T Consensus 125 G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i~l~Dt~G~---~~P~~v~~~~~~~~~~~~~~i~~H~Hn~~G 196 (262)
T cd07948 125 GIEVRFSSEDSFRSDLVDLLRVYRAVDKLGVNRVGIADTVGI---ATPRQVYELVRTLRGVVSCDIEFHGHNDTG 196 (262)
T ss_pred CCeEEEEEEeeCCCCHHHHHHHHHHHHHcCCCEEEECCcCCC---CCHHHHHHHHHHHHHhcCCeEEEEECCCCC
Confidence 677776553333367888888888887776666766777773 3445555666666553 7999999988877
No 52
>PRK09045 N-ethylammeline chlorohydrolase; Provisional
Probab=90.09 E-value=15 Score=34.32 Aligned_cols=28 Identities=18% Similarity=0.106 Sum_probs=24.2
Q ss_pred CCcccHHHHHHHHHHcCCCeeEecCCCC
Q 026472 202 GEWTTFLPALKFAREQGLQITLHCGEVH 229 (238)
Q Consensus 202 ~~~~~f~~~f~~ar~~gl~~t~HAGE~~ 229 (238)
.++..+..+++.|++.|+++.+|++|..
T Consensus 199 ~~~~~l~~~~~~A~~~g~~v~~H~~e~~ 226 (443)
T PRK09045 199 VSDENLERIRTLAEQLDLPIHIHLHETA 226 (443)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeecCcH
Confidence 3557889999999999999999999854
No 53
>PRK08418 chlorohydrolase; Provisional
Probab=89.08 E-value=15 Score=34.11 Aligned_cols=27 Identities=22% Similarity=0.206 Sum_probs=23.1
Q ss_pred CcccHHHHHHHHHHcCCCeeEecCCCC
Q 026472 203 EWTTFLPALKFAREQGLQITLHCGEVH 229 (238)
Q Consensus 203 ~~~~f~~~f~~ar~~gl~~t~HAGE~~ 229 (238)
++..+..+.+.|++.|++++.|..|+.
T Consensus 188 s~e~l~~~~~~A~~~~~~i~~H~~E~~ 214 (408)
T PRK08418 188 HPILAKKALQLAKKENLLVSTHFLESK 214 (408)
T ss_pred CHHHHHHHHHHHHHcCCeEEEEecCCH
Confidence 346788888999999999999999954
No 54
>COG0402 SsnA Cytosine deaminase and related metal-dependent hydrolases [Nucleotide transport and metabolism / General function prediction only]
Probab=87.68 E-value=23 Score=32.85 Aligned_cols=27 Identities=0% Similarity=-0.125 Sum_probs=23.8
Q ss_pred hhcCChHHHHHHHHHHHHHHHhcCCeE
Q 026472 66 VLTTDHATVTRITQEVVEDFASENIVY 92 (238)
Q Consensus 66 ~l~~~~~~~~~~~~~~~~~~a~dgV~Y 92 (238)
..+.++++++..+...+.++.+.|+-.
T Consensus 93 ~~~~~~e~~~~~a~~~~~e~l~~G~t~ 119 (421)
T COG0402 93 ARLLTEEDLYARALLALLEMLRNGTTT 119 (421)
T ss_pred hhcCCHHHHHHHHHHHHHHHHhcCccc
Confidence 344678899999999999999999988
No 55
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=87.62 E-value=11 Score=32.76 Aligned_cols=118 Identities=13% Similarity=0.082 Sum_probs=77.9
Q ss_pred HHHHHHHhcCCeEEEEeecCCC---CccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCC
Q 026472 80 EVVEDFASENIVYLELRTTPKR---NESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGK 156 (238)
Q Consensus 80 ~~~~~~a~dgV~Y~Elr~~P~~---~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (238)
+-++.+...|+.++-+-++-.. ....+.|.++.++.+.+.++.+++ .
T Consensus 73 ~~v~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~------------------------------~ 122 (259)
T cd07939 73 EDIEAALRCGVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKD------------------------------R 122 (259)
T ss_pred HHHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHH------------------------------C
Confidence 3345666778877666543221 123467889999999999987752 3
Q ss_pred CcEEEEEEEEeCCCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCCCcccHHHHHHHHHHc-CCCeeEecCCCCC
Q 026472 157 KIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ-GLQITLHCGEVHM 230 (238)
Q Consensus 157 ~i~vrlI~~~~R~~~~e~~~~~~~la~~~~~~~vvG~dL~G~E~~~~~~~f~~~f~~ar~~-gl~~t~HAGE~~~ 230 (238)
|+++.+-+...-..+++...+.++.+.+...+.|.=-|.+|. ..|.+....+...++. ++++-+|+--+.|
T Consensus 123 G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~G~---~~P~~v~~lv~~l~~~~~~~l~~H~Hn~~G 194 (259)
T cd07939 123 GLFVSVGAEDASRADPDFLIEFAEVAQEAGADRLRFADTVGI---LDPFTTYELIRRLRAATDLPLEFHAHNDLG 194 (259)
T ss_pred CCeEEEeeccCCCCCHHHHHHHHHHHHHCCCCEEEeCCCCCC---CCHHHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence 666653222222257888888888887765566666677773 3456677777776653 6899999988776
No 56
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=87.42 E-value=8.7 Score=35.44 Aligned_cols=118 Identities=15% Similarity=0.145 Sum_probs=82.2
Q ss_pred HHHHHHHHhcCCeEEEEeecCCC---CccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCC
Q 026472 79 QEVVEDFASENIVYLELRTTPKR---NESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRG 155 (238)
Q Consensus 79 ~~~~~~~a~dgV~Y~Elr~~P~~---~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (238)
.+-++.+.+-|+..+-+-++... ...-+.|.++.++.+.+.++.++ +
T Consensus 78 ~~di~~a~~~g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~------------------------------~ 127 (378)
T PRK11858 78 KSDIDASIDCGVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAK------------------------------D 127 (378)
T ss_pred HHHHHHHHhCCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHH------------------------------H
Confidence 44466666778887777654322 22347899999999999998774 2
Q ss_pred CCcEEEEEE-EEeCCCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCCCcccHHHHHHHHHHc-CCCeeEecCCCCC
Q 026472 156 KKIYVRLLL-SIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ-GLQITLHCGEVHM 230 (238)
Q Consensus 156 ~~i~vrlI~-~~~R~~~~e~~~~~~~la~~~~~~~vvG~dL~G~E~~~~~~~f~~~f~~ar~~-gl~~t~HAGE~~~ 230 (238)
.|+.+.+-. ...| .+++...++++.+.+...+.|+=-|.+| ...|.++..+++..++. ++++-+|+--+.|
T Consensus 128 ~G~~v~~~~ed~~r-~~~~~l~~~~~~~~~~Ga~~I~l~DT~G---~~~P~~v~~lv~~l~~~~~~~l~~H~Hnd~G 200 (378)
T PRK11858 128 HGLYVSFSAEDASR-TDLDFLIEFAKAAEEAGADRVRFCDTVG---ILDPFTMYELVKELVEAVDIPIEVHCHNDFG 200 (378)
T ss_pred CCCeEEEEeccCCC-CCHHHHHHHHHHHHhCCCCEEEEeccCC---CCCHHHHHHHHHHHHHhcCCeEEEEecCCcC
Confidence 366666533 2223 5788888888888877555666667776 34567777777777654 8999999988876
No 57
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=84.87 E-value=15 Score=31.41 Aligned_cols=175 Identities=15% Similarity=0.136 Sum_probs=107.3
Q ss_pred ccCCCCCHHHHHHHHHHhccCCCCCch--hhh--HHHhcCCCCHHHHHHHhHH------HHhhcCChHHHHHHHHHHHHH
Q 026472 15 HLNGSIRDSTLLELARVLGEKGVIVFS--DVE--HVIMKSDRSLHEVFKLFDL------IHVLTTDHATVTRITQEVVED 84 (238)
Q Consensus 15 HL~Gsi~~~tl~~la~~~~~~~~~~~~--~~~--~~~~~~~~~l~~f~~~f~~------~~~l~~~~~~~~~~~~~~~~~ 84 (238)
+.+..++.+..+++++...+.|+..+. .+. .+. ....+..+.++.... +..+..+ -.+.++.
T Consensus 11 ~~~~~~s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~-p~~~~~~~~i~~l~~~~~~~~~~~l~~~-------~~~~i~~ 82 (265)
T cd03174 11 SEGATFSTEDKLEIAEALDEAGVDSIEVGSGASPKAV-PQMEDDWEVLRAIRKLVPNVKLQALVRN-------REKGIER 82 (265)
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCEEEeccCcCcccc-ccCCCHHHHHHHHHhccCCcEEEEEccC-------chhhHHH
Confidence 455678899999988876555654211 000 000 011223333332211 1122222 1566777
Q ss_pred HHhcCCeEEEEeecCCC-Cc--cCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCCCcEEE
Q 026472 85 FASENIVYLELRTTPKR-NE--SIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYVR 161 (238)
Q Consensus 85 ~a~dgV~Y~Elr~~P~~-~~--~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vr 161 (238)
+.+-|+..+=+-++... +. ..+.+.++.++.+.+.++.++ +.|+.+.
T Consensus 83 a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~------------------------------~~G~~v~ 132 (265)
T cd03174 83 ALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAK------------------------------EAGLEVE 132 (265)
T ss_pred HHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHH------------------------------HCCCeEE
Confidence 77788777666554331 11 124577778888888888764 3477888
Q ss_pred EEE-EEeC-CCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCCCcccHHHHHHHHHHc-C-CCeeEecCCCCC
Q 026472 162 LLL-SIDR-RETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ-G-LQITLHCGEVHM 230 (238)
Q Consensus 162 lI~-~~~R-~~~~e~~~~~~~la~~~~~~~vvG~dL~G~E~~~~~~~f~~~f~~ar~~-g-l~~t~HAGE~~~ 230 (238)
+-+ .+.| ..+++...+.++.+.+...+.|.-.|..|. ..|.++...+...++. + +++-+|+-.+.|
T Consensus 133 ~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~Dt~G~---~~P~~v~~li~~l~~~~~~~~~~~H~Hn~~g 202 (265)
T cd03174 133 GSLEDAFGCKTDPEYVLEVAKALEEAGADEISLKDTVGL---ATPEEVAELVKALREALPDVPLGLHTHNTLG 202 (265)
T ss_pred EEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEechhcCC---cCHHHHHHHHHHHHHhCCCCeEEEEeCCCCC
Confidence 777 4554 278888889999988887666776677774 3456677777776654 3 899999988776
No 58
>PRK07228 N-ethylammeline chlorohydrolase; Provisional
Probab=84.74 E-value=33 Score=31.94 Aligned_cols=27 Identities=22% Similarity=0.224 Sum_probs=23.0
Q ss_pred CcccHHHHHHHHHHcCCCeeEecCCCC
Q 026472 203 EWTTFLPALKFAREQGLQITLHCGEVH 229 (238)
Q Consensus 203 ~~~~f~~~f~~ar~~gl~~t~HAGE~~ 229 (238)
++..+..+++.|++.|+++.+|+.|..
T Consensus 197 ~~~~l~~~~~~a~~~g~~v~~H~~e~~ 223 (445)
T PRK07228 197 TEELLRGVRDLADEYGVRIHTHASENR 223 (445)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEeCCCH
Confidence 456778889999999999999998854
No 59
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=83.76 E-value=25 Score=31.05 Aligned_cols=116 Identities=15% Similarity=0.072 Sum_probs=77.8
Q ss_pred HHHHHHhcCCeEEEEeec--CCC-CccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCCC
Q 026472 81 VVEDFASENIVYLELRTT--PKR-NESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKK 157 (238)
Q Consensus 81 ~~~~~a~dgV~Y~Elr~~--P~~-~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (238)
-++.+.+-|+..+-+-++ +.. ....+.+.++.++.+.+.++.++ +.|
T Consensus 79 ~~~~A~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~------------------------------~~G 128 (280)
T cd07945 79 SVDWIKSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAI------------------------------KNG 128 (280)
T ss_pred HHHHHHHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHH------------------------------hCC
Confidence 355666668887776653 222 12346789999999999998764 346
Q ss_pred cEEEEEEEE----eCCCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCCCcccHHHHHHHHHHc--CCCeeEecCCCCC
Q 026472 158 IYVRLLLSI----DRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ--GLQITLHCGEVHM 230 (238)
Q Consensus 158 i~vrlI~~~----~R~~~~e~~~~~~~la~~~~~~~vvG~dL~G~E~~~~~~~f~~~f~~ar~~--gl~~t~HAGE~~~ 230 (238)
+++++-+.- .| .+++...++++.+.+..-+.|.=-|.+| ...|.+....++..++. ++++.+|+--+.|
T Consensus 129 ~~v~~~~~d~~~~~r-~~~~~~~~~~~~~~~~G~~~i~l~DT~G---~~~P~~v~~l~~~l~~~~~~~~i~~H~Hnd~G 203 (280)
T cd07945 129 IEVNIYLEDWSNGMR-DSPDYVFQLVDFLSDLPIKRIMLPDTLG---ILSPFETYTYISDMVKRYPNLHFDFHAHNDYD 203 (280)
T ss_pred CEEEEEEEeCCCCCc-CCHHHHHHHHHHHHHcCCCEEEecCCCC---CCCHHHHHHHHHHHHhhCCCCeEEEEeCCCCC
Confidence 666654432 13 4788888888877776545555556666 34556677777777664 5899999988877
No 60
>COG1831 Predicted metal-dependent hydrolase (urease superfamily) [General function prediction only]
Probab=82.65 E-value=34 Score=30.29 Aligned_cols=127 Identities=18% Similarity=0.184 Sum_probs=74.5
Q ss_pred HHHHHHHHHhcCCeEEEEeecCCC-CccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCC
Q 026472 78 TQEVVEDFASENIVYLELRTTPKR-NESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGK 156 (238)
Q Consensus 78 ~~~~~~~~a~dgV~Y~Elr~~P~~-~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (238)
..+++++|++.|=..+=+=.-|.. +...+.+.+++.+++-..++.+..- ....
T Consensus 21 ~~ea~~~F~rAGGt~~il~nlps~~~g~~~~~~edy~r~yd~~lr~ve~~--------------------------r~e~ 74 (285)
T COG1831 21 ALEAARRFHRAGGTHLILVNLPSWSYGIAPTGGEDYRRLYDIHLRLVEKI--------------------------REEG 74 (285)
T ss_pred HHHHHHHHHHcCCcEEEEeecccccccCCCCcHHHHHHHHHHHHHHHHHH--------------------------HHhc
Confidence 567888999888777766444543 2233456677766665555544321 2334
Q ss_pred CcEEEEEEEE---------eCCCCHHHHHHHH----HHHHhcC-CCcEEEEeccCCCCCCCcc---------cHHHHHHH
Q 026472 157 KIYVRLLLSI---------DRRETTEAAMETV----KLALEMR-DLGVVGIDLSGNPTKGEWT---------TFLPALKF 213 (238)
Q Consensus 157 ~i~vrlI~~~---------~R~~~~e~~~~~~----~la~~~~-~~~vvG~dL~G~E~~~~~~---------~f~~~f~~ 213 (238)
++++-..+.. ..+.+|+.+.+.+ ++|.++- .+..|||+=+|.+ ++|.+ -+..+|..
T Consensus 75 ~~~~~~vvGvHPaE~~~l~e~~~~peea~e~m~~~lelA~k~v~eg~avaiGEvGrP-HypVs~~v~~~~n~vl~~a~el 153 (285)
T COG1831 75 PVEAYAVVGVHPAEVSRLAEAGRSPEEALEEMRHALELAAKLVEEGKAVAIGEVGRP-HYPVSEEVWEASNEVLEYAMEL 153 (285)
T ss_pred CceeEEEeccCHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHhccceeeeeccCCC-CCCCCHHHHHHHHHHHHHHHHH
Confidence 4443333322 1235666655555 4444443 3469999988877 34331 23446677
Q ss_pred HHHcCCCeeEecCCCCChh
Q 026472 214 AREQGLQITLHCGEVHMSF 232 (238)
Q Consensus 214 ar~~gl~~t~HAGE~~~~~ 232 (238)
|++.|.++.+|. |..+++
T Consensus 154 A~dvdc~vqLHt-es~~~~ 171 (285)
T COG1831 154 AKDVDCAVQLHT-ESLDEE 171 (285)
T ss_pred hhcCCCcEEEec-CCCChH
Confidence 888899999995 445544
No 61
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=79.57 E-value=42 Score=29.37 Aligned_cols=116 Identities=14% Similarity=0.092 Sum_probs=79.1
Q ss_pred HHHHHHhcCCeEEEEeecCCC---CccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCCC
Q 026472 81 VVEDFASENIVYLELRTTPKR---NESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKK 157 (238)
Q Consensus 81 ~~~~~a~dgV~Y~Elr~~P~~---~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (238)
-++.+...|+..+-+-++... ....+.+.++.++.+.+.++.+++ .|
T Consensus 83 ~~~~a~~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~------------------------------~G 132 (273)
T cd07941 83 NLQALLEAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKS------------------------------HG 132 (273)
T ss_pred HHHHHHhCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHH------------------------------cC
Confidence 456677778887766555332 123567889999999999988753 36
Q ss_pred cEEEEEE-EE---eCCCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCCCcccHHHHHHHHHHc-C-CCeeEecCCCCC
Q 026472 158 IYVRLLL-SI---DRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ-G-LQITLHCGEVHM 230 (238)
Q Consensus 158 i~vrlI~-~~---~R~~~~e~~~~~~~la~~~~~~~vvG~dL~G~E~~~~~~~f~~~f~~ar~~-g-l~~t~HAGE~~~ 230 (238)
+.+.+-. ++ .| .+++...+.++.+.+...+.|+=-|.+| ...|......++..++. + +++-+|+--+.|
T Consensus 133 ~~v~~~~~~~~d~~~-~~~~~~~~~~~~~~~~g~~~i~l~DT~G---~~~P~~v~~lv~~l~~~~~~~~l~~H~Hnd~G 207 (273)
T cd07941 133 REVIFDAEHFFDGYK-ANPEYALATLKAAAEAGADWLVLCDTNG---GTLPHEIAEIVKEVRERLPGVPLGIHAHNDSG 207 (273)
T ss_pred CeEEEeEEeccccCC-CCHHHHHHHHHHHHhCCCCEEEEecCCC---CCCHHHHHHHHHHHHHhCCCCeeEEEecCCCC
Confidence 6665521 11 23 4677878888877776556677677777 34566777777777764 4 889999988776
No 62
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=78.41 E-value=48 Score=29.38 Aligned_cols=172 Identities=13% Similarity=0.052 Sum_probs=98.1
Q ss_pred CCCCCHHHHHHHHHHhccCCCCCch--hhh--HHHhcCCCCHHHHHHHhHH-----HHhhcCChHHHHHHHHHHHHHHHh
Q 026472 17 NGSIRDSTLLELARVLGEKGVIVFS--DVE--HVIMKSDRSLHEVFKLFDL-----IHVLTTDHATVTRITQEVVEDFAS 87 (238)
Q Consensus 17 ~Gsi~~~tl~~la~~~~~~~~~~~~--~~~--~~~~~~~~~l~~f~~~f~~-----~~~l~~~~~~~~~~~~~~~~~~a~ 87 (238)
.-.++++.-+++++...+.|+.... ++- .+++. .++-.+.++.... +..+..+..++ +.+.+
T Consensus 20 ~~~~s~e~k~~ia~~L~~~Gv~~IEvgsf~~p~~~p~-~~d~~e~~~~l~~~~~~~~~~l~~~~~~i--------e~A~~ 90 (287)
T PRK05692 20 KRFIPTADKIALIDRLSAAGLSYIEVASFVSPKWVPQ-MADAAEVMAGIQRRPGVTYAALTPNLKGL--------EAALA 90 (287)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEeCCCcCcccccc-cccHHHHHHhhhccCCCeEEEEecCHHHH--------HHHHH
Confidence 4468899999999886666654211 110 01111 0111122222111 11122233333 55556
Q ss_pred cCCeEEEEeecCCC---CccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCCCcEEEEEE
Q 026472 88 ENIVYLELRTTPKR---NESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYVRLLL 164 (238)
Q Consensus 88 dgV~Y~Elr~~P~~---~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vrlI~ 164 (238)
-|+..+-+-++-.. ....+.+.++.++.+.+.++.+++ .|+.++.-+
T Consensus 91 ~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~------------------------------~g~~v~~~i 140 (287)
T PRK05692 91 AGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQ------------------------------AGVRVRGYV 140 (287)
T ss_pred cCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHH------------------------------cCCEEEEEE
Confidence 68888777654321 123468899999999999988742 356655433
Q ss_pred EE-eC-----CCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCCCcccHHHHHHHHHHc--CCCeeEecCCCCC
Q 026472 165 SI-DR-----RETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ--GLQITLHCGEVHM 230 (238)
Q Consensus 165 ~~-~R-----~~~~e~~~~~~~la~~~~~~~vvG~dL~G~E~~~~~~~f~~~f~~ar~~--gl~~t~HAGE~~~ 230 (238)
+. .. ..+++...+.++.+.+.--+.|.=-|.+| ...|.+....++..++. ++++-+|+--+.|
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i~l~DT~G---~~~P~~v~~lv~~l~~~~~~~~i~~H~Hn~~G 211 (287)
T PRK05692 141 SCVLGCPYEGEVPPEAVADVAERLFALGCYEISLGDTIG---VGTPGQVRAVLEAVLAEFPAERLAGHFHDTYG 211 (287)
T ss_pred EEEecCCCCCCCCHHHHHHHHHHHHHcCCcEEEeccccC---ccCHHHHHHHHHHHHHhCCCCeEEEEecCCCC
Confidence 32 11 24677777777777766444444445555 33567777777777764 3899999988877
No 63
>smart00148 PLCXc Phospholipase C, catalytic domain (part); domain X. Phosphoinositide-specific phospholipases C. These enzymes contain 2 regions (X and Y) which together form a TIM barrel-like structure containing the active site residues. Phospholipase C enzymes (PI-PLC) act as signal transducers that generate two second messengers, inositol-1,4,5-trisphosphate and diacylglycerol. The bacterial enzyme [6] appears to be a homologue of the mammalian PLCs.
Probab=78.08 E-value=19 Score=28.16 Aligned_cols=42 Identities=10% Similarity=-0.026 Sum_probs=25.3
Q ss_pred HHHHHHHhcCCeEEEEeecCCC------Ccc----CCCCHHHHHHHHHHHHH
Q 026472 80 EVVEDFASENIVYLELRTTPKR------NES----IGMSKRSYMDAVVEGLR 121 (238)
Q Consensus 80 ~~~~~~a~dgV~Y~Elr~~P~~------~~~----~~~~~~~~l~~v~~~~~ 121 (238)
..+.+....||+|+|+|..... ++. .+++.+++++.+.+=+.
T Consensus 32 ~~i~~qL~~GvR~~dirv~~~~~~~~~v~Hg~~~~~~~~~~dvL~~i~~fl~ 83 (135)
T smart00148 32 EGYIQALDHGCRCVELDCWDGPDGEPVIYHGHTFTLPIKLSEVLEAIKDFAF 83 (135)
T ss_pred HHHHHHHHhCCCEEEEEcccCCCCCEEEEECCcccccEEHHHHHHHHHHHHH
Confidence 3455566799999999987532 111 23455666555554443
No 64
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=76.77 E-value=41 Score=30.81 Aligned_cols=119 Identities=10% Similarity=0.052 Sum_probs=77.4
Q ss_pred HHHHHHHHhcCCeEEEEeecCC--C-CccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCC
Q 026472 79 QEVVEDFASENIVYLELRTTPK--R-NESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRG 155 (238)
Q Consensus 79 ~~~~~~~a~dgV~Y~Elr~~P~--~-~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (238)
.+-++.+..-|+..+-+-++-. . ...-+.+.++.++.+.+.++.++ +
T Consensus 75 ~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak------------------------------~ 124 (365)
T TIGR02660 75 DADIEAAARCGVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFAR------------------------------D 124 (365)
T ss_pred HHHHHHHHcCCcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHH------------------------------h
Confidence 3445566666776555543321 1 12346788999999988888764 2
Q ss_pred CCcEEEEEEEEeCCCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCCCcccHHHHHHHHHHc-CCCeeEecCCCCC
Q 026472 156 KKIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ-GLQITLHCGEVHM 230 (238)
Q Consensus 156 ~~i~vrlI~~~~R~~~~e~~~~~~~la~~~~~~~vvG~dL~G~E~~~~~~~f~~~f~~ar~~-gl~~t~HAGE~~~ 230 (238)
.|+.+.+-+.-.-..+++...++++.+.+...+.|+=-|.+| ...|..+...++..++. ++++-+|+--+.|
T Consensus 125 ~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l~DT~G---~~~P~~v~~lv~~l~~~~~v~l~~H~HNd~G 197 (365)
T TIGR02660 125 RGLFVSVGGEDASRADPDFLVELAEVAAEAGADRFRFADTVG---ILDPFSTYELVRALRQAVDLPLEMHAHNDLG 197 (365)
T ss_pred CCCEEEEeecCCCCCCHHHHHHHHHHHHHcCcCEEEEcccCC---CCCHHHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence 356655432222235688888888888776555566666666 34567777888777654 7999999988776
No 65
>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []. The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....
Probab=75.84 E-value=11 Score=31.90 Aligned_cols=54 Identities=30% Similarity=0.412 Sum_probs=35.7
Q ss_pred CHHHHHHHHHHHHhcCCCcEEEEeccCCCCCCCc--ccHH-HHHHHHHHcCCCeeEecC
Q 026472 171 TTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEW--TTFL-PALKFAREQGLQITLHCG 226 (238)
Q Consensus 171 ~~e~~~~~~~la~~~~~~~vvG~dL~G~E~~~~~--~~f~-~~f~~ar~~gl~~t~HAG 226 (238)
.++.+.+.++.++.. .+++||-+.-.-.+..+ ..+. ++|+.|.+.|+++.+|+|
T Consensus 82 ~~~~~~~~l~~~~~~--~g~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~H~g 138 (273)
T PF04909_consen 82 DPEDAVEELERALQE--LGFRGVKLHPDLGGFDPDDPRLDDPIFEAAEELGLPVLIHTG 138 (273)
T ss_dssp SHHHHHHHHHHHHHT--TTESEEEEESSETTCCTTSGHCHHHHHHHHHHHT-EEEEEES
T ss_pred CchhHHHHHHHhccc--cceeeeEecCCCCccccccHHHHHHHHHHHHhhccceeeecc
Confidence 355666666666543 35888887543333222 3344 999999999999999988
No 66
>COG3964 Predicted amidohydrolase [General function prediction only]
Probab=75.50 E-value=11 Score=34.17 Aligned_cols=55 Identities=27% Similarity=0.344 Sum_probs=39.8
Q ss_pred hcCCCcEEEEec-cCCCCCCCc--ccHHHHHHHHHHcCCCeeEecCCCCCh-hHHHhhC
Q 026472 184 EMRDLGVVGIDL-SGNPTKGEW--TTFLPALKFAREQGLQITLHCGEVHMS-FECLLLL 238 (238)
Q Consensus 184 ~~~~~~vvG~dL-~G~E~~~~~--~~f~~~f~~ar~~gl~~t~HAGE~~~~-~~i~~~~ 238 (238)
+..++.+||+-+ ++.+..+.+ .......+.|...++|+.+|-||-..+ .+|.+.|
T Consensus 148 reh~d~ivGlKvR~s~~~~g~~GitPl~la~~ia~~~klPlmvHigePp~~~dEvlerL 206 (386)
T COG3964 148 REHRDVIVGLKVRVSTEDIGEYGITPLTLALRIANDLKLPLMVHIGEPPVLMDEVLERL 206 (386)
T ss_pred HhCcCcEEEEEEEeeeccccccCCchHHHHHHHHhhcCCceEEecCCCCccHHHHHHhc
Confidence 333567999998 566666533 556667888888999999999995444 6776654
No 67
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=74.73 E-value=47 Score=28.87 Aligned_cols=118 Identities=14% Similarity=0.125 Sum_probs=74.5
Q ss_pred HHHHHHHhcC----CeEEEEeec--CCC-CccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccC
Q 026472 80 EVVEDFASEN----IVYLELRTT--PKR-NESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNG 152 (238)
Q Consensus 80 ~~~~~~a~dg----V~Y~Elr~~--P~~-~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (238)
.-++.+.+-| +..+-+-++ +.. ....+.+.++.++.+.+.++.+++
T Consensus 73 ~~v~~a~~~~~~~~~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~--------------------------- 125 (268)
T cd07940 73 KDIDAAAEALKPAKVDRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKS--------------------------- 125 (268)
T ss_pred hhHHHHHHhCCCCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH---------------------------
Confidence 3344444445 665444332 221 122467888889999898887642
Q ss_pred CCCCCcEEEEEEEEeCCCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCCCcccHHHHHHHHHHc-C---CCeeEecCCC
Q 026472 153 TRGKKIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ-G---LQITLHCGEV 228 (238)
Q Consensus 153 ~~~~~i~vrlI~~~~R~~~~e~~~~~~~la~~~~~~~vvG~dL~G~E~~~~~~~f~~~f~~ar~~-g---l~~t~HAGE~ 228 (238)
.|+.+.+-..-.-..+++...+.++.+.+...+.|+=-|.+|. ..|.+....++..++. + +++-+|+--+
T Consensus 126 ---~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~G~---~~P~~v~~lv~~l~~~~~~~~i~l~~H~Hn~ 199 (268)
T cd07940 126 ---HGLDVEFSAEDATRTDLDFLIEVVEAAIEAGATTINIPDTVGY---LTPEEFGELIKKLKENVPNIKVPISVHCHND 199 (268)
T ss_pred ---cCCeEEEeeecCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCC---CCHHHHHHHHHHHHHhCCCCceeEEEEecCC
Confidence 3556553222212257888888888777765555666677764 4567777788877764 3 8999999888
Q ss_pred CC
Q 026472 229 HM 230 (238)
Q Consensus 229 ~~ 230 (238)
.|
T Consensus 200 ~G 201 (268)
T cd07940 200 LG 201 (268)
T ss_pred cc
Confidence 77
No 68
>cd01297 D-aminoacylase D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics.
Probab=74.64 E-value=72 Score=29.50 Aligned_cols=51 Identities=27% Similarity=0.385 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhcCCC-cEEEEeccCCCCCCCcccHHHHHHHHHHcCCCeeEe
Q 026472 174 AAMETVKLALEMRDL-GVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLH 224 (238)
Q Consensus 174 ~~~~~~~la~~~~~~-~vvG~dL~G~E~~~~~~~f~~~f~~ar~~gl~~t~H 224 (238)
...+.++++.+.... .|+=+...+.-..+......+.++.|++.|+++|.-
T Consensus 229 av~~~~~~a~~~g~r~~i~H~ss~~~~~~~~~~~~l~~i~~a~~~G~~v~~e 280 (415)
T cd01297 229 ALDELLRLGRETGRPVHISHLKSAGAPNWGKIDRLLALIEAARAEGLQVTAD 280 (415)
T ss_pred HHHHHHHHHHHhCCCEEEEEEecCCCcccchHHHHHHHHHHHHHhCCcEEEE
Confidence 344555555544322 244444443322344566677888888889988754
No 69
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=74.24 E-value=65 Score=29.55 Aligned_cols=115 Identities=16% Similarity=0.037 Sum_probs=75.4
Q ss_pred HHHHHhcCCeEEEEeecCC--CC-ccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCCCc
Q 026472 82 VEDFASENIVYLELRTTPK--RN-ESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKI 158 (238)
Q Consensus 82 ~~~~a~dgV~Y~Elr~~P~--~~-~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 158 (238)
++.+.+-|+..+-+-++-. .. ...+.+.++.++.+.+.++.++ +.|+
T Consensus 127 ie~A~~~g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak------------------------------~~Gl 176 (347)
T PLN02746 127 FEAAIAAGAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAK------------------------------KHSI 176 (347)
T ss_pred HHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHH------------------------------HcCC
Confidence 3344456888777765432 11 2346899999999999998764 3466
Q ss_pred EEEEEEEE-------eCCCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCCCcccHHHHHHHHHHc-C-CCeeEecCCCC
Q 026472 159 YVRLLLSI-------DRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ-G-LQITLHCGEVH 229 (238)
Q Consensus 159 ~vrlI~~~-------~R~~~~e~~~~~~~la~~~~~~~vvG~dL~G~E~~~~~~~f~~~f~~ar~~-g-l~~t~HAGE~~ 229 (238)
.++.-++. .| .+++...++++.+.+.--+.|+==|.+| ...|.+....++..++. + .++-+|+--+.
T Consensus 177 ~v~~~is~~fg~p~~~r-~~~~~l~~~~~~~~~~Gad~I~l~DT~G---~a~P~~v~~lv~~l~~~~~~~~i~~H~Hnd~ 252 (347)
T PLN02746 177 PVRGYVSCVVGCPIEGP-VPPSKVAYVAKELYDMGCYEISLGDTIG---VGTPGTVVPMLEAVMAVVPVDKLAVHFHDTY 252 (347)
T ss_pred eEEEEEEeeecCCccCC-CCHHHHHHHHHHHHHcCCCEEEecCCcC---CcCHHHHHHHHHHHHHhCCCCeEEEEECCCC
Confidence 66644433 22 4677887787777766444455556666 34567777777777764 4 47899998887
Q ss_pred C
Q 026472 230 M 230 (238)
Q Consensus 230 ~ 230 (238)
|
T Consensus 253 G 253 (347)
T PLN02746 253 G 253 (347)
T ss_pred C
Confidence 7
No 70
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=74.07 E-value=50 Score=28.50 Aligned_cols=22 Identities=9% Similarity=0.074 Sum_probs=17.6
Q ss_pred HHHHHHHHHhcCCeEEEEeecC
Q 026472 78 TQEVVEDFASENIVYLELRTTP 99 (238)
Q Consensus 78 ~~~~~~~~a~dgV~Y~Elr~~P 99 (238)
..+.++.+++.|..++|+...+
T Consensus 23 ~~e~~~~~~~~G~~~iEl~~~~ 44 (283)
T PRK13209 23 WLEKLAIAKTAGFDFVEMSVDE 44 (283)
T ss_pred HHHHHHHHHHcCCCeEEEecCc
Confidence 3467788889999999998653
No 71
>PRK09389 (R)-citramalate synthase; Provisional
Probab=73.99 E-value=58 Score=31.24 Aligned_cols=116 Identities=13% Similarity=0.077 Sum_probs=77.6
Q ss_pred HHHHHhcCCeEEEEeec--CCC-CccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCCCc
Q 026472 82 VEDFASENIVYLELRTT--PKR-NESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKI 158 (238)
Q Consensus 82 ~~~~a~dgV~Y~Elr~~--P~~-~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 158 (238)
++.+.+-|+..+-+-.+ +.. ....+.+.++.++.+.+.++.+++ .|.
T Consensus 79 i~~a~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~------------------------------~g~ 128 (488)
T PRK09389 79 IDAALECDVDSVHLVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKD------------------------------HGL 128 (488)
T ss_pred HHHHHhCCcCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHH------------------------------CCC
Confidence 45555667766555443 221 123468999999999999987642 355
Q ss_pred EEEEEEEEeCCCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCCCcccHHHHHHHHHHc-CCCeeEecCCCCC
Q 026472 159 YVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ-GLQITLHCGEVHM 230 (238)
Q Consensus 159 ~vrlI~~~~R~~~~e~~~~~~~la~~~~~~~vvG~dL~G~E~~~~~~~f~~~f~~ar~~-gl~~t~HAGE~~~ 230 (238)
.+.+-..-.-..+++.+.++++.+.+...+.|+=-|-+| ...|.++...++..++. ++++-+|+--+.|
T Consensus 129 ~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l~DTvG---~~~P~~~~~lv~~l~~~~~v~l~~H~HND~G 198 (488)
T PRK09389 129 IVELSGEDASRADLDFLKELYKAGIEAGADRICFCDTVG---ILTPEKTYELFKRLSELVKGPVSIHCHNDFG 198 (488)
T ss_pred EEEEEEeeCCCCCHHHHHHHHHHHHhCCCCEEEEecCCC---CcCHHHHHHHHHHHHhhcCCeEEEEecCCcc
Confidence 555433322235688888888888776555566666676 34567788888877754 7999999987766
No 72
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=73.97 E-value=30 Score=29.23 Aligned_cols=175 Identities=14% Similarity=0.094 Sum_probs=98.6
Q ss_pred cCCCCCHHHHHHHHHHhccCCCCCchhhhHHHhcC----CCCHHHHHHHhH--HHHhhcC-ChHHHHHHHHHHHHHHHhc
Q 026472 16 LNGSIRDSTLLELARVLGEKGVIVFSDVEHVIMKS----DRSLHEVFKLFD--LIHVLTT-DHATVTRITQEVVEDFASE 88 (238)
Q Consensus 16 L~Gsi~~~tl~~la~~~~~~~~~~~~~~~~~~~~~----~~~l~~f~~~f~--~~~~l~~-~~~~~~~~~~~~~~~~a~d 88 (238)
.+..++.+..+++++...+.|+..+ |-.++.. ...+....+... .+..+.. ...+ ....++.+..-
T Consensus 7 ~~~~~~~~~k~~i~~~L~~~Gv~~i---Evg~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~----i~~~~~~~~~~ 79 (237)
T PF00682_consen 7 NGVAFSTEEKLEIAKALDEAGVDYI---EVGFPFASEDDFEQVRRLREALPNARLQALCRANEED----IERAVEAAKEA 79 (237)
T ss_dssp CSTT--HHHHHHHHHHHHHHTTSEE---EEEHCTSSHHHHHHHHHHHHHHHSSEEEEEEESCHHH----HHHHHHHHHHT
T ss_pred CCCCcCHHHHHHHHHHHHHhCCCEE---EEcccccCHHHHHHhhhhhhhhcccccceeeeehHHH----HHHHHHhhHhc
Confidence 3567888999998887665665421 1101000 011111111111 1111222 2222 33334455567
Q ss_pred CCeEEEEeecCCC---CccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCCCcEEEEEEE
Q 026472 89 NIVYLELRTTPKR---NESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYVRLLLS 165 (238)
Q Consensus 89 gV~Y~Elr~~P~~---~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vrlI~~ 165 (238)
|+..+-+-++-.. ....+.+.++.++.+.+.++.+++ .|+.+.+-+.
T Consensus 80 g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~------------------------------~g~~v~~~~~ 129 (237)
T PF00682_consen 80 GIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKE------------------------------LGYEVAFGCE 129 (237)
T ss_dssp TSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHH------------------------------TTSEEEEEET
T ss_pred cCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHh------------------------------cCCceEeCcc
Confidence 7776666544322 223467889999999888887742 4666643222
Q ss_pred EeCCCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCCCcccHHHHHHHHHHc-C-CCeeEecCCCCC
Q 026472 166 IDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ-G-LQITLHCGEVHM 230 (238)
Q Consensus 166 ~~R~~~~e~~~~~~~la~~~~~~~vvG~dL~G~E~~~~~~~f~~~f~~ar~~-g-l~~t~HAGE~~~ 230 (238)
-.-..+++...+.++.+.+...+.|.=-|.+|.- .|.+..+.++..++. + +++-+|+--+.|
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~g~~~i~l~Dt~G~~---~P~~v~~lv~~~~~~~~~~~l~~H~Hnd~G 193 (237)
T PF00682_consen 130 DASRTDPEELLELAEALAEAGADIIYLADTVGIM---TPEDVAELVRALREALPDIPLGFHAHNDLG 193 (237)
T ss_dssp TTGGSSHHHHHHHHHHHHHHT-SEEEEEETTS-S----HHHHHHHHHHHHHHSTTSEEEEEEBBTTS
T ss_pred ccccccHHHHHHHHHHHHHcCCeEEEeeCccCCc---CHHHHHHHHHHHHHhccCCeEEEEecCCcc
Confidence 2223578888888888888866777777888744 566777788877764 4 889999877666
No 73
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=73.41 E-value=64 Score=28.34 Aligned_cols=115 Identities=13% Similarity=0.065 Sum_probs=77.0
Q ss_pred HHHHHhcCCeEEEEeecCCC---CccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCCCc
Q 026472 82 VEDFASENIVYLELRTTPKR---NESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKI 158 (238)
Q Consensus 82 ~~~~a~dgV~Y~Elr~~P~~---~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 158 (238)
++.+.+-|+..+-+-++... ....+.+.++.++.+.+.++.++ +.|+
T Consensus 79 v~~A~~~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak------------------------------~~G~ 128 (274)
T cd07938 79 AERALAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAK------------------------------AAGL 128 (274)
T ss_pred HHHHHHcCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHH------------------------------HCCC
Confidence 56666778887766654332 12346788899999999988764 2355
Q ss_pred EEEEEEE--Ee-----CCCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCCCcccHHHHHHHHHHc--CCCeeEecCCCC
Q 026472 159 YVRLLLS--ID-----RRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ--GLQITLHCGEVH 229 (238)
Q Consensus 159 ~vrlI~~--~~-----R~~~~e~~~~~~~la~~~~~~~vvG~dL~G~E~~~~~~~f~~~f~~ar~~--gl~~t~HAGE~~ 229 (238)
.+.+-++ +. | .+++...+.++.+.+..-+.|+=-|.+|. ..|.+....++..++. ++++-+|+--+.
T Consensus 129 ~v~~~i~~~f~~~~~~~-~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~---~~P~~v~~lv~~l~~~~~~~~i~~H~Hnd~ 204 (274)
T cd07938 129 RVRGYVSTAFGCPYEGE-VPPERVAEVAERLLDLGCDEISLGDTIGV---ATPAQVRRLLEAVLERFPDEKLALHFHDTR 204 (274)
T ss_pred eEEEEEEeEecCCCCCC-CCHHHHHHHHHHHHHcCCCEEEECCCCCc---cCHHHHHHHHHHHHHHCCCCeEEEEECCCC
Confidence 5554333 21 3 36777777877777664454555566664 4567777788877765 589999998887
Q ss_pred C
Q 026472 230 M 230 (238)
Q Consensus 230 ~ 230 (238)
|
T Consensus 205 G 205 (274)
T cd07938 205 G 205 (274)
T ss_pred C
Confidence 6
No 74
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=72.59 E-value=12 Score=33.26 Aligned_cols=44 Identities=25% Similarity=0.384 Sum_probs=33.1
Q ss_pred CcEEEEeccCCCCC--CCcccHHHHHHHHHHcCCCeeEecCCCCCh
Q 026472 188 LGVVGIDLSGNPTK--GEWTTFLPALKFAREQGLQITLHCGEVHMS 231 (238)
Q Consensus 188 ~~vvG~dL~G~E~~--~~~~~f~~~f~~ar~~gl~~t~HAGE~~~~ 231 (238)
.++||+-+-+.=.+ .....+-++|+.|.++|+++.+|.|=..++
T Consensus 125 ~gf~g~~l~p~~~~~~~~~~~~~pi~~~a~~~gvpv~ihtG~~~~~ 170 (293)
T COG2159 125 LGFVGVKLHPVAQGFYPDDPRLYPIYEAAEELGVPVVIHTGAGPGG 170 (293)
T ss_pred cCceEEEecccccCCCCCChHHHHHHHHHHHcCCCEEEEeCCCCCC
Confidence 46999999543222 223457899999999999999999986653
No 75
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=66.71 E-value=18 Score=33.79 Aligned_cols=56 Identities=18% Similarity=0.168 Sum_probs=42.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCCCcccHHHHHHHHHHcCCCeeE
Q 026472 168 RRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITL 223 (238)
Q Consensus 168 R~~~~e~~~~~~~la~~~~~~~vvG~dL~G~E~~~~~~~f~~~f~~ar~~gl~~t~ 223 (238)
+..+++++++.+.....+.....-|+.++|.|+..-...+.++++.+++.|+++.+
T Consensus 52 ~~~t~~evl~ev~~d~~~~~~~~ggVtisGGGepl~~~~l~eLl~~lk~~gi~taI 107 (404)
T TIGR03278 52 DFIPPQVVLGEVQTSLGFRTGRDTKVTISGGGDVSCYPELEELTKGLSDLGLPIHL 107 (404)
T ss_pred CcCCHHHHHHHHHHHHHHhcCCCCEEEEECCcccccCHHHHHHHHHHHhCCCCEEE
Confidence 44578888888887776543346677888887766667788999999999999765
No 76
>TIGR00010 hydrolase, TatD family. Several genomes have multiple paralogs related to this family. However, a set of 17 proteins can be found, one each from 17 of the first 20 genomes, such that each member forms a bidirectional best hit across genomes with all other members of the set. This core set (and one other near-perfect member), but not the other paralogs, form the seed for this model. Additionally, members of the seed alignment and all trusted hits, but not all paralogs, have a conserved motif DxHxH near the amino end. The member from E. coli was recently shown to have DNase activity.
Probab=66.16 E-value=27 Score=29.33 Aligned_cols=41 Identities=24% Similarity=0.282 Sum_probs=28.8
Q ss_pred CCcEEEEeccCCCCCCCc-------ccHHHHHHHHHHcCCCeeEecCC
Q 026472 187 DLGVVGIDLSGNPTKGEW-------TTFLPALKFAREQGLQITLHCGE 227 (238)
Q Consensus 187 ~~~vvG~dL~G~E~~~~~-------~~f~~~f~~ar~~gl~~t~HAGE 227 (238)
...++||+-.|-.....+ ..|..+++.|++.|+++.+|++.
T Consensus 83 ~~~~~~iGEiGld~~~~~~~~~~q~~~~~~~~~~a~~~~~pv~iH~~~ 130 (252)
T TIGR00010 83 HPKVVAIGETGLDYYKADEYKRRQEEVFRAQLQLAEELNLPVIIHARD 130 (252)
T ss_pred CCCEEEEEecccCcCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEecC
Confidence 346888877765432211 44666677888999999999986
No 77
>TIGR01434 glu_cys_ligase glutamate--cysteine ligase. serve to protect against oxidative damage and participate in a biosynthetic or detoxification reactions.
Probab=65.77 E-value=10 Score=36.54 Aligned_cols=37 Identities=19% Similarity=0.430 Sum_probs=26.3
Q ss_pred HHHHHHhcCCeEEEEeec-CCCCccCCCCHHH--HHHHHH
Q 026472 81 VVEDFASENIVYLELRTT-PKRNESIGMSKRS--YMDAVV 117 (238)
Q Consensus 81 ~~~~~a~dgV~Y~Elr~~-P~~~~~~~~~~~~--~l~~v~ 117 (238)
-++.+.+.||.|+|+|.- -.-+...|++.++ .++.+.
T Consensus 310 ~l~aL~~~GVeYIEvR~lDlnPf~~~GI~~~ql~FL~lfL 349 (512)
T TIGR01434 310 PSDALLRRGIEYVEVRSLDINPFSPIGIDEQQVRFLDLFL 349 (512)
T ss_pred hHHHHHhcCCcEEEEeeccCCCCCcCCCCHHHHHHHHHHH
Confidence 778899999999999943 2223557888777 354443
No 78
>cd01310 TatD_DNAse TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
Probab=65.55 E-value=25 Score=29.41 Aligned_cols=47 Identities=23% Similarity=0.270 Sum_probs=31.2
Q ss_pred CcEEEEeccCCCCC-CC----c--ccHHHHHHHHHHcCCCeeEecCCCCChhHHHh
Q 026472 188 LGVVGIDLSGNPTK-GE----W--TTFLPALKFAREQGLQITLHCGEVHMSFECLL 236 (238)
Q Consensus 188 ~~vvG~dL~G~E~~-~~----~--~~f~~~f~~ar~~gl~~t~HAGE~~~~~~i~~ 236 (238)
..++||+-.|-... .. . .-|.++++.|++.|+++.+|+|-. +..+.+
T Consensus 84 ~~~~~IGeiGld~~~~~~~~~~q~~~~~~~~~~a~e~~~pv~iH~~~~--~~~~~~ 137 (251)
T cd01310 84 PKVVAIGEIGLDYYRDKSPREVQKEVFRAQLELAKELNLPVVIHSRDA--HEDVLE 137 (251)
T ss_pred CCEEEEEeeecCcCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEeeCc--hHHHHH
Confidence 34888877773322 11 1 346677888999999999999853 444443
No 79
>PF00388 PI-PLC-X: Phosphatidylinositol-specific phospholipase C, X domain This entry is for the whole phospholipase C protein; InterPro: IPR000909 Phosphatidylinositol-specific phospholipase C (3.1.4.11 from EC), a eukaryotic intracellular enzyme, plays an important role in signal transduction processes []. It catalyzes the hydrolysis of 1-phosphatidyl-D-myo-inositol-3,4,5-triphosphate into the second messenger molecules diacylglycerol and inositol-1,4,5-triphosphate. This catalytic process is tightly regulated by reversible phosphorylation and binding of regulatory proteins [, , ]. In mammals, there are at least 6 different isoforms of PI-PLC, they differ in their domain structure, their regulation, and their tissue distribution. Lower eukaryotes also possess multiple isoforms of PI-PLC. All eukaryotic PI-PLCs contain two regions of homology, sometimes referred to as the 'X-box' and 'Y-box'. The order of these two regions is always the same (NH2-X-Y-COOH), but the spacing is variable. In most isoforms, the distance between these two regions is only 50-100 residues but in the gamma isoforms one PH domain, two SH2 domains, and one SH3 domain are inserted between the two PLC-specific domains. The two conserved regions have been shown to be important for the catalytic activity. By profile analysis, we could show that sequences with significant similarity to the X-box domain occur also in prokaryotic and trypanosome PI-specific phospholipases C. Apart from this region, the prokaryotic enzymes show no similarity to their eukaryotic counterparts.; GO: 0004629 phospholipase C activity, 0006629 lipid metabolic process, 0035556 intracellular signal transduction; PDB: 2FJU_B 2ZKM_X 3V18_A 3V1H_A 3V16_A 3QR1_D 3EA3_A 3EA1_A 2OR2_A 1T6M_B ....
Probab=64.98 E-value=18 Score=28.27 Aligned_cols=41 Identities=17% Similarity=0.248 Sum_probs=22.1
Q ss_pred HHHHHHhcCCeEEEEeec--CC----CCcc----CCCCHHHHHHHHHHHHH
Q 026472 81 VVEDFASENIVYLELRTT--PK----RNES----IGMSKRSYMDAVVEGLR 121 (238)
Q Consensus 81 ~~~~~a~dgV~Y~Elr~~--P~----~~~~----~~~~~~~~l~~v~~~~~ 121 (238)
-+.+.-..||+|+|||+. +. .++. .+++.++++..+.+=+.
T Consensus 31 ~i~~QL~~GiR~lDlrv~~~~~~~~~v~Hg~~~~~~~~~~dvL~~i~~fl~ 81 (146)
T PF00388_consen 31 SIREQLESGIRYLDLRVWDGNDGELVVYHGITSTSGITFEDVLNDIRDFLF 81 (146)
T ss_dssp HHHHHHHTT--EEEEEEEEETTSSEEEEETTSEE-EEEHHHHHHHHHHHTT
T ss_pred hHHHHHhccCceEEEEEEcCCCCceEEEeCCEeeeeEeHHHHHHHHHHHHh
Confidence 344555679999999987 22 2221 13566666665555443
No 80
>PRK02107 glutamate--cysteine ligase; Provisional
Probab=64.86 E-value=11 Score=36.45 Aligned_cols=36 Identities=19% Similarity=0.449 Sum_probs=25.7
Q ss_pred HHHHHHhcCCeEEEEeec-CCCCccCCCCHHH--HHHHH
Q 026472 81 VVEDFASENIVYLELRTT-PKRNESIGMSKRS--YMDAV 116 (238)
Q Consensus 81 ~~~~~a~dgV~Y~Elr~~-P~~~~~~~~~~~~--~l~~v 116 (238)
-++++.+.||.|+|+|.- -.-+...|++.++ .++.+
T Consensus 314 ~l~aL~~~GIeYIEvR~lDlNPf~~~GI~~~ql~FL~lf 352 (523)
T PRK02107 314 PSDALARRGVEYIEVRSLDINPFSPIGIDEEQVRFLDLF 352 (523)
T ss_pred HHHHHHhcCCcEEEEeeccCCCCCcCCCCHHHHHHHHHH
Confidence 678899999999999943 2223557888776 34444
No 81
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=63.95 E-value=22 Score=31.61 Aligned_cols=59 Identities=15% Similarity=0.151 Sum_probs=37.6
Q ss_pred CCHHHHHHHHHHHHhcCCCcEEEEeccCC------CC---CCCcccHHHHHHHHHHcCCCeeEecCCCC
Q 026472 170 ETTEAAMETVKLALEMRDLGVVGIDLSGN------PT---KGEWTTFLPALKFAREQGLQITLHCGEVH 229 (238)
Q Consensus 170 ~~~e~~~~~~~la~~~~~~~vvG~dL~G~------E~---~~~~~~f~~~f~~ar~~gl~~t~HAGE~~ 229 (238)
.+++++.+.++..++...+.|--+- .|. .. ..+...+..+++.|++.|+++++|+.+..
T Consensus 117 ~~~~~~~~~v~~~~~~G~~~iK~~~-~g~~~~~~~~~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~~~~ 184 (342)
T cd01299 117 DGVEEVRAAVREQLRRGADQIKIMA-TGGVLSPGDPPPDTQFSEEELRAIVDEAHKAGLYVAAHAYGAE 184 (342)
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEec-cCCcCCCCCCCcccCcCHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 3577777777766654333333221 111 11 12457788899999999999999998643
No 82
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=63.77 E-value=44 Score=27.88 Aligned_cols=62 Identities=16% Similarity=0.283 Sum_probs=42.2
Q ss_pred CCcEEEEEEEEeCCCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCCCcccHHHHHHHHHHcCCCeeE-ecC
Q 026472 156 KKIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITL-HCG 226 (238)
Q Consensus 156 ~~i~vrlI~~~~R~~~~e~~~~~~~la~~~~~~~vvG~dL~G~E~~~~~~~f~~~f~~ar~~gl~~t~-HAG 226 (238)
.|+.+.++ .....+++.-.+.++.++..+.++|+ +.... +....+.++++++.|+|++. +.+
T Consensus 27 ~g~~~~~~--~~~~~d~~~q~~~i~~~i~~~~d~Ii-v~~~~------~~~~~~~l~~~~~~gIpvv~~d~~ 89 (257)
T PF13407_consen 27 LGYEVEIV--FDAQNDPEEQIEQIEQAISQGVDGII-VSPVD------PDSLAPFLEKAKAAGIPVVTVDSD 89 (257)
T ss_dssp HTCEEEEE--EESTTTHHHHHHHHHHHHHTTESEEE-EESSS------TTTTHHHHHHHHHTTSEEEEESST
T ss_pred cCCEEEEe--CCCCCCHHHHHHHHHHHHHhcCCEEE-ecCCC------HHHHHHHHHHHhhcCceEEEEecc
Confidence 46666655 56667777778888988877766555 32222 23466889999999999665 444
No 83
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=63.46 E-value=1.2e+02 Score=27.59 Aligned_cols=72 Identities=15% Similarity=0.021 Sum_probs=52.2
Q ss_pred CCcEEEEEEEEeCCCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCCCcccHHHHHHHHHHc---CCCeeEecCCCCC
Q 026472 156 KKIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ---GLQITLHCGEVHM 230 (238)
Q Consensus 156 ~~i~vrlI~~~~R~~~~e~~~~~~~la~~~~~~~vvG~dL~G~E~~~~~~~f~~~f~~ar~~---gl~~t~HAGE~~~ 230 (238)
.|+++.+-++..-..+++...++++.+.++..+.|.=.|-+|. ..|.+....++..++. ++++-+|+-.+.|
T Consensus 127 ~G~~v~~~l~~a~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~---~~P~~v~~~v~~l~~~l~~~i~ig~H~HnnlG 201 (337)
T PRK08195 127 LGMDTVGFLMMSHMAPPEKLAEQAKLMESYGAQCVYVVDSAGA---LLPEDVRDRVRALRAALKPDTQVGFHGHNNLG 201 (337)
T ss_pred CCCeEEEEEEeccCCCHHHHHHHHHHHHhCCCCEEEeCCCCCC---CCHHHHHHHHHHHHHhcCCCCeEEEEeCCCcc
Confidence 3555555444433467888888888888876677777788873 4567777788877765 6999999999887
No 84
>PF04262 Glu_cys_ligase: Glutamate-cysteine ligase ; InterPro: IPR007370 This is a group of bacterial glutamate-cysteine ligases that carry out the first step of the glutathione biosynthesis pathway according to the following equation: ATP + L-glutamate + L-cysteine = ADP + phosphate + L-glutamyl-L-cysteine (L-aminohexanoate can replace glutamate). ; GO: 0004357 glutamate-cysteine ligase activity, 0006750 glutathione biosynthetic process; PDB: 3LN6_A 3LN7_B 1VA6_B 2D33_B 1V4G_B 2D32_A 3NZT_A.
Probab=63.27 E-value=7.4 Score=36.04 Aligned_cols=32 Identities=25% Similarity=0.423 Sum_probs=19.5
Q ss_pred HHHHHHhcCCeEEEEeec-CCCCccCCCCHHHH
Q 026472 81 VVEDFASENIVYLELRTT-PKRNESIGMSKRSY 112 (238)
Q Consensus 81 ~~~~~a~dgV~Y~Elr~~-P~~~~~~~~~~~~~ 112 (238)
-++++.++||.|+|+|.- -.-++..|++.+++
T Consensus 311 ~l~~L~~~Gi~YiE~R~lDlnPf~~~GI~~~~l 343 (377)
T PF04262_consen 311 PLDALLRRGIEYIELRSLDLNPFSPIGISEDQL 343 (377)
T ss_dssp CHHHHHHH---EEEEEEEE--TTSTTSS-HHHH
T ss_pred hHHHHHhcCCeEEEEeeccCCCCCcCCCCHHHH
Confidence 588899999999999943 22235678887763
No 85
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=60.89 E-value=1.1e+02 Score=27.86 Aligned_cols=72 Identities=14% Similarity=0.006 Sum_probs=50.9
Q ss_pred CCcEEEEEEEEeCCCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCCCcccHHHHHHHHHHc-C--CCeeEecCCCCC
Q 026472 156 KKIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ-G--LQITLHCGEVHM 230 (238)
Q Consensus 156 ~~i~vrlI~~~~R~~~~e~~~~~~~la~~~~~~~vvG~dL~G~E~~~~~~~f~~~f~~ar~~-g--l~~t~HAGE~~~ 230 (238)
.|+++..-+...-..+++...++++.+.++..+.|+=.|-+|. ..|.+....+..+++. + +++-+|+-.+.|
T Consensus 126 ~G~~v~~~l~~s~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~---~~P~~v~~~v~~l~~~l~~~i~ig~H~HnnlG 200 (333)
T TIGR03217 126 LGMDTVGFLMMSHMTPPEKLAEQAKLMESYGADCVYIVDSAGA---MLPDDVRDRVRALKAVLKPETQVGFHAHHNLS 200 (333)
T ss_pred cCCeEEEEEEcccCCCHHHHHHHHHHHHhcCCCEEEEccCCCC---CCHHHHHHHHHHHHHhCCCCceEEEEeCCCCc
Confidence 3555544333333467888888888888776677888888884 3556777777777754 4 899999998887
No 86
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=60.65 E-value=25 Score=29.79 Aligned_cols=57 Identities=21% Similarity=0.126 Sum_probs=35.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCCCcccH-HHHHHHHHHcCCCeeEec
Q 026472 168 RRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTF-LPALKFAREQGLQITLHC 225 (238)
Q Consensus 168 R~~~~e~~~~~~~la~~~~~~~vvG~dL~G~E~~~~~~~f-~~~f~~ar~~gl~~t~HA 225 (238)
+..++++..+.+..-..+....=-|+-++|.|.--. .+| .++++.+++.|++++++-
T Consensus 17 ~~~t~eel~~~~~~~~~f~~~sggGVt~SGGEPllq-~~fl~~l~~~~k~~gi~~~leT 74 (213)
T PRK10076 17 RDITLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQ-AEFATRFLQRLRLWGVSCAIET 74 (213)
T ss_pred cccCHHHHHHHHHhhhHhhcCCCCEEEEeCchHHcC-HHHHHHHHHHHHHcCCCEEEEC
Confidence 345666655544433322211123788899986543 455 688999999999999874
No 87
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=60.17 E-value=87 Score=25.00 Aligned_cols=107 Identities=15% Similarity=0.093 Sum_probs=59.8
Q ss_pred HHHHHhcCCeEEEEeecCCCCccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCCCcEEE
Q 026472 82 VEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYVR 161 (238)
Q Consensus 82 ~~~~a~dgV~Y~Elr~~P~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vr 161 (238)
++.+++-|..++|++..+..... .....++.+.+.++ ++|+.+-
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~---~~~~~~~~~~~~~~---------------------------------~~gl~i~ 44 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWD---EKDDEAEELRRLLE---------------------------------DYGLKIA 44 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHT---HHHHHHHHHHHHHH---------------------------------HTTCEEE
T ss_pred ChHHHHcCCCEEEEecCCCcccc---cchHHHHHHHHHHH---------------------------------HcCCeEE
Confidence 46678889999999887543110 00233444444444 3577766
Q ss_pred EEEEEeCCCC---------------HHHHHHHHHHHHhcCCCcEEEEecc--CCCCCCCc----c----cHHHHHHHHHH
Q 026472 162 LLLSIDRRET---------------TEAAMETVKLALEMRDLGVVGIDLS--GNPTKGEW----T----TFLPALKFARE 216 (238)
Q Consensus 162 lI~~~~R~~~---------------~e~~~~~~~la~~~~~~~vvG~dL~--G~E~~~~~----~----~f~~~f~~ar~ 216 (238)
.+....+... .+...+.++.|..+..+ .+.+... +....... . .+..+...|.+
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lg~~-~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~ 123 (213)
T PF01261_consen 45 SLHPPTNFWSPDEENGSANDEREEALEYLKKAIDLAKRLGAK-YIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEE 123 (213)
T ss_dssp EEEEEESSSCTGTTSTTSSSHHHHHHHHHHHHHHHHHHHTBS-EEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecccccccccccccCcchhhHHHHHHHHHHHHHHHHhCCC-ceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhh
Confidence 6666555443 35566677777776544 4444443 12222211 2 23344556777
Q ss_pred cCCCeeEec
Q 026472 217 QGLQITLHC 225 (238)
Q Consensus 217 ~gl~~t~HA 225 (238)
.|+.+.++-
T Consensus 124 ~gv~i~lE~ 132 (213)
T PF01261_consen 124 YGVRIALEN 132 (213)
T ss_dssp HTSEEEEE-
T ss_pred hcceEEEec
Confidence 799888874
No 88
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=60.13 E-value=1.7e+02 Score=28.34 Aligned_cols=116 Identities=14% Similarity=0.065 Sum_probs=78.1
Q ss_pred HHHHHHhcCCeEEEEeecCCC---CccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCCC
Q 026472 81 VVEDFASENIVYLELRTTPKR---NESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKK 157 (238)
Q Consensus 81 ~~~~~a~dgV~Y~Elr~~P~~---~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (238)
.++.+..-|+..+-+.++... ....+.+.++.++.+.+.++.+++ .|
T Consensus 90 ~~e~~~~~g~~~i~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~------------------------------~G 139 (524)
T PRK12344 90 NLQALLDAGTPVVTIFGKSWDLHVTEALRTTLEENLAMIRDSVAYLKA------------------------------HG 139 (524)
T ss_pred HHHHHHhCCCCEEEEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHH------------------------------cC
Confidence 455566667776666543221 123568899999999999987753 35
Q ss_pred cEEEEEE----EEeCCCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCCCcccHHHHHHHHHHc-CCCeeEecCCCCC
Q 026472 158 IYVRLLL----SIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ-GLQITLHCGEVHM 230 (238)
Q Consensus 158 i~vrlI~----~~~R~~~~e~~~~~~~la~~~~~~~vvG~dL~G~E~~~~~~~f~~~f~~ar~~-gl~~t~HAGE~~~ 230 (238)
.++.+=. ...| .+++.+.++++.+.+...+.|+=-|.+|. ..|.++...++..++. ++++-+|+--+.|
T Consensus 140 ~~v~~~~e~~~Da~r-~d~~~l~~~~~~~~~~Gad~i~l~DTvG~---~~P~~v~~li~~l~~~~~v~i~~H~HND~G 213 (524)
T PRK12344 140 REVIFDAEHFFDGYK-ANPEYALATLKAAAEAGADWVVLCDTNGG---TLPHEVAEIVAEVRAAPGVPLGIHAHNDSG 213 (524)
T ss_pred CeEEEcccccccccc-CCHHHHHHHHHHHHhCCCCeEEEccCCCC---cCHHHHHHHHHHHHHhcCCeEEEEECCCCC
Confidence 5555311 1123 56888888888887776666776677763 3566777777777665 8999999988776
No 89
>cd00137 PI-PLCc Catalytic domain of prokaryotic and eukaryotic phosphoinositide-specific phospholipase C. This subfamily corresponds to the catalytic domain present in prokaryotic and eukaryotic phosphoinositide-specific phospholipase C (PI-PLC), which is a ubiquitous enzyme catalyzing the cleavage of the sn3-phosphodiester bond in the membrane phosphoinositides (phosphatidylinositol, PI; Phosphatidylinositol-4-phosphate, PIP; phosphatidylinositol 4,5-bisphosphate, PIP2) to yield inositol phosphates (inositol monosphosphate, InsP; inositol diphosphate, InsP2; inositol trisphosphate, InsP3) and diacylglycerol (DAG). The higher eukaryotic PI-PLCs (EC 3.1.4.11) have a multidomain organization that consists of a PLC catalytic core domain, and various regulatory domains. They play a critical role in most signal transduction pathways, controlling numerous cellular events, such as cell growth, proliferation, excitation and secretion. These PI-PLCs strictly require Ca2+ for their catalytic a
Probab=58.44 E-value=94 Score=27.29 Aligned_cols=41 Identities=7% Similarity=0.144 Sum_probs=24.3
Q ss_pred HHHHHHhcCCeEEEEeecCCC------Ccc---CCCCHHHHHHHHHHHHH
Q 026472 81 VVEDFASENIVYLELRTTPKR------NES---IGMSKRSYMDAVVEGLR 121 (238)
Q Consensus 81 ~~~~~a~dgV~Y~Elr~~P~~------~~~---~~~~~~~~l~~v~~~~~ 121 (238)
.+.+....||+|+|||..... ++. .+++.++++.++.+=+.
T Consensus 39 ~~~~qL~~G~R~lDir~~~~~~~~~~v~HG~~~~~~~f~dvl~~i~~fl~ 88 (274)
T cd00137 39 MYRQQLLSGCRCVDIRCWDGKPEEPIIYHGPTFLDIFLKEVIEAIAQFLK 88 (274)
T ss_pred HHHHHHHcCCcEEEEEeecCCCCCeEEEECCcccCcCHHHHHHHHHHHHH
Confidence 344455689999999986321 111 14566666666655544
No 90
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=57.89 E-value=10 Score=25.49 Aligned_cols=25 Identities=28% Similarity=0.545 Sum_probs=19.2
Q ss_pred hhcccc-----CCCCCHHHHHHHHHHhccCCCC
Q 026472 11 ELHAHL-----NGSIRDSTLLELARVLGEKGVI 38 (238)
Q Consensus 11 eLH~HL-----~Gsi~~~tl~~la~~~~~~~~~ 38 (238)
|||+|- +|.++++.+++.|++ +|+.
T Consensus 1 dlH~Ht~~S~~~~~~~~~~~~~~a~~---~g~~ 30 (67)
T smart00481 1 DLHVHSDYSLLDGALSPEELVKRAKE---LGLK 30 (67)
T ss_pred CCccccCCccccccCCHHHHHHHHHH---cCCC
Confidence 577774 577899999999985 6654
No 91
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=56.68 E-value=1.5e+02 Score=26.62 Aligned_cols=23 Identities=22% Similarity=0.576 Sum_probs=19.2
Q ss_pred CcccHHHHHHHHHHcCCCeeEec
Q 026472 203 EWTTFLPALKFAREQGLQITLHC 225 (238)
Q Consensus 203 ~~~~f~~~f~~ar~~gl~~t~HA 225 (238)
+...|.++-+++|+.||++..|-
T Consensus 166 d~~~y~dav~r~rkrgIkvc~Hi 188 (312)
T COG1242 166 DFACYVDAVKRLRKRGIKVCTHL 188 (312)
T ss_pred chHHHHHHHHHHHHcCCeEEEEE
Confidence 34667888889999999999995
No 92
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=55.90 E-value=1.3e+02 Score=29.15 Aligned_cols=115 Identities=10% Similarity=-0.012 Sum_probs=77.2
Q ss_pred HHHHHhcCCeEEEEeec--CCCC-ccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCCCc
Q 026472 82 VEDFASENIVYLELRTT--PKRN-ESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKI 158 (238)
Q Consensus 82 ~~~~a~dgV~Y~Elr~~--P~~~-~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 158 (238)
++.+..-|+..+-+-.+ +... ..-+.+.++.++.+.+.++-++ +.|.
T Consensus 87 ~ea~~~~~~~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak------------------------------~~g~ 136 (526)
T TIGR00977 87 LQALIKAETPVVTIFGKSWDLHVLEALQTTLEENLAMIYDTVAYLK------------------------------RQGD 136 (526)
T ss_pred HHHHhcCCCCEEEEEeCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH------------------------------HcCC
Confidence 44445556655555433 2221 2346789999999999998774 2456
Q ss_pred EEEEEEE----EeCCCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCCCcccHHHHHHHHHHc-C-CCeeEecCCCCC
Q 026472 159 YVRLLLS----IDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ-G-LQITLHCGEVHM 230 (238)
Q Consensus 159 ~vrlI~~----~~R~~~~e~~~~~~~la~~~~~~~vvG~dL~G~E~~~~~~~f~~~f~~ar~~-g-l~~t~HAGE~~~ 230 (238)
.|.+... ..| .+++.+.++++.+.+...+.|+=-|-+| ...|.++..+++..++. + .++-+|+-=+.|
T Consensus 137 ~V~~~~e~f~D~~r-~~~~~l~~~~~~a~~aGad~i~i~DTvG---~~~P~~v~~li~~l~~~~~~~~i~vH~HND~G 210 (526)
T TIGR00977 137 EVIYDAEHFFDGYK-ANPEYALATLATAQQAGADWLVLCDTNG---GTLPHEISEITTKVKRSLKQPQLGIHAHNDSG 210 (526)
T ss_pred eEEEEeeeeeeccc-CCHHHHHHHHHHHHhCCCCeEEEecCCC---CcCHHHHHHHHHHHHHhCCCCEEEEEECCCCC
Confidence 6654333 124 5889999999988877666677778887 44567888888888765 3 448999876665
No 93
>PRK12928 lipoyl synthase; Provisional
Probab=55.34 E-value=1.5e+02 Score=26.28 Aligned_cols=70 Identities=23% Similarity=0.207 Sum_probs=46.1
Q ss_pred CCCcEEEEEEEEeCCCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCC--C------CcccHHHHHHHHHHcCC-------
Q 026472 155 GKKIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTK--G------EWTTFLPALKFAREQGL------- 219 (238)
Q Consensus 155 ~~~i~vrlI~~~~R~~~~e~~~~~~~la~~~~~~~vvG~dL~G~E~~--~------~~~~f~~~f~~ar~~gl------- 219 (238)
+..+...+|+.. +.+.++..+.++.+.+...+ .+.+.--=.++. . +|..|...-+.|.+.|+
T Consensus 203 ~i~~~s~iIvG~--GET~ed~~etl~~Lrel~~d-~v~i~~Yl~p~~~~~~v~~~~~~~~f~~~~~~~~~~g~~~~~~~p 279 (290)
T PRK12928 203 DIPTKSGLMLGL--GETEDEVIETLRDLRAVGCD-RLTIGQYLRPSLAHLPVQRYWTPEEFEALGQIARELGFSHVRSGP 279 (290)
T ss_pred CceecccEEEeC--CCCHHHHHHHHHHHHhcCCC-EEEEEcCCCCCccCCceeeccCHHHHHHHHHHHHHcCCceeEecC
Confidence 355667788876 78889999999988887654 555544333333 1 34666666666777764
Q ss_pred --CeeEecCC
Q 026472 220 --QITLHCGE 227 (238)
Q Consensus 220 --~~t~HAGE 227 (238)
+-..||||
T Consensus 280 ~~rssy~a~~ 289 (290)
T PRK12928 280 LVRSSYHAGE 289 (290)
T ss_pred cccccccCCC
Confidence 44567776
No 94
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=53.99 E-value=1.5e+02 Score=25.83 Aligned_cols=71 Identities=14% Similarity=0.054 Sum_probs=50.2
Q ss_pred CcEEEEEEEEeCCCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCCCcccHHHHHHHHHHc-C--CCeeEecCCCCC
Q 026472 157 KIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ-G--LQITLHCGEVHM 230 (238)
Q Consensus 157 ~i~vrlI~~~~R~~~~e~~~~~~~la~~~~~~~vvG~dL~G~E~~~~~~~f~~~f~~ar~~-g--l~~t~HAGE~~~ 230 (238)
|+++.+-+...-..+++...+.++.+.+...+.|.=-|..| ...|.+....++..++. + +++-+|+--+.|
T Consensus 122 G~~v~~~~~~a~~~~~~~~~~~~~~~~~~g~~~i~l~DT~G---~~~P~~v~~lv~~l~~~~~~~~~i~~H~Hn~~G 195 (266)
T cd07944 122 GYEVFFNLMAISGYSDEELLELLELVNEIKPDVFYIVDSFG---SMYPEDIKRIISLLRSNLDKDIKLGFHAHNNLQ 195 (266)
T ss_pred CCeEEEEEEeecCCCHHHHHHHHHHHHhCCCCEEEEecCCC---CCCHHHHHHHHHHHHHhcCCCceEEEEeCCCcc
Confidence 55555533332237888888888888877666677777777 34567777777777654 4 999999988877
No 95
>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type. gamma-glutamyltripeptides of the form gamma-Glu-Cys-X(aa). The N-terminal region is similar to proteobacterial glutamate-cysteine ligase. The C-terminal region is homologous to cyanophycin synthetase of cyanobacteria and, more distantly, to D-alanine-D-alanine ligases. Members of this family are found in Listeria and Enterococcus, Gram-positive lineages in which glutathione is produced (see PUBMED:8606174), and in Pasteurella multocida, a Proteobacterium. In Clostridium acetobutylicum, adjacent genes include separate proteins rather than a fusion protein.
Probab=53.78 E-value=21 Score=36.06 Aligned_cols=37 Identities=32% Similarity=0.513 Sum_probs=25.4
Q ss_pred HHHHHHhcCCeEEEEeec-CCCCccCCCCHHH--HHHHHH
Q 026472 81 VVEDFASENIVYLELRTT-PKRNESIGMSKRS--YMDAVV 117 (238)
Q Consensus 81 ~~~~~a~dgV~Y~Elr~~-P~~~~~~~~~~~~--~l~~v~ 117 (238)
-++++.+.||.|+|+|.- -.-++..|++.++ .++.+.
T Consensus 259 ~~~~l~~~Gi~YiE~R~lDlnPf~~~GI~~~~~~Fl~lfl 298 (737)
T TIGR01435 259 TVESLAKTGIEYLEIRSIDLNPFEPNGISKDELIFIHLFM 298 (737)
T ss_pred cHHHHHhcCCcEEEEeeccCCCCCcCCCCHHHHHHHHHHH
Confidence 467888999999999943 2223556888776 344444
No 96
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=53.17 E-value=2.4e+02 Score=27.92 Aligned_cols=114 Identities=13% Similarity=0.081 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHhcCCeEEEEeecCCCCccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCC
Q 026472 75 TRITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTR 154 (238)
Q Consensus 75 ~~~~~~~~~~~a~dgV~Y~Elr~~P~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (238)
..+++..++.+++.|+..+=+.-+... ++-+..+++.+++ .
T Consensus 95 d~vv~~~v~~a~~~Gidv~Rifd~lnd-----------~~n~~~~i~~~k~----------------------------~ 135 (596)
T PRK14042 95 DDVVRAFVKLAVNNGVDVFRVFDALND-----------ARNLKVAIDAIKS----------------------------H 135 (596)
T ss_pred hHHHHHHHHHHHHcCCCEEEEcccCcc-----------hHHHHHHHHHHHH----------------------------c
Confidence 457788999999999998544221111 3334444444431 1
Q ss_pred CCCcEEEEEEEEeCCCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCCCcccHHHHHHHHHHc-CCCeeEecCCCCC
Q 026472 155 GKKIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ-GLQITLHCGEVHM 230 (238)
Q Consensus 155 ~~~i~vrlI~~~~R~~~~e~~~~~~~la~~~~~~~vvG~dL~G~E~~~~~~~f~~~f~~ar~~-gl~~t~HAGE~~~ 230 (238)
..-..+-+.++..--++++...++++.+.+.--+.|+=-|.+|-= .|......++..++. ++++-+|+--+.|
T Consensus 136 G~~~~~~i~yt~sp~~t~e~~~~~ak~l~~~Gad~I~IkDtaG~l---~P~~v~~lv~alk~~~~ipi~~H~Hnt~G 209 (596)
T PRK14042 136 KKHAQGAICYTTSPVHTLDNFLELGKKLAEMGCDSIAIKDMAGLL---TPTVTVELYAGLKQATGLPVHLHSHSTSG 209 (596)
T ss_pred CCEEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEeCCcccCC---CHHHHHHHHHHHHhhcCCEEEEEeCCCCC
Confidence 112233344445444677777777766666544556666777743 445555666666653 8999999998887
No 97
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=52.38 E-value=10 Score=29.87 Aligned_cols=26 Identities=35% Similarity=0.578 Sum_probs=19.9
Q ss_pred hhhccc-----cCCCCCHHHHHHHHHHhccCCCC
Q 026472 10 VELHAH-----LNGSIRDSTLLELARVLGEKGVI 38 (238)
Q Consensus 10 ~eLH~H-----L~Gsi~~~tl~~la~~~~~~~~~ 38 (238)
+|||+| ++|..+++.+.+.|++ .|+.
T Consensus 1 iDlH~HT~~s~~dg~~~~~e~v~~A~~---~Gl~ 31 (175)
T PF02811_consen 1 IDLHVHTKYSILDGKDSPEEYVEQAKE---KGLD 31 (175)
T ss_dssp EEEEB--TTTSSTSSSSHHHHHHHHHH---TTES
T ss_pred CCccccccCcchhhcCCHHHHHHHHHH---cCCC
Confidence 589999 5778899999999985 5553
No 98
>TIGR00857 pyrC_multi dihydroorotase, multifunctional complex type. All proteins described by this model should represent active and inactive dihydroorotase per se and functionally equivalent domains of multifunctional proteins from higher eukaryotes, but exclude related proteins such as allantoinase.
Probab=52.16 E-value=1.9e+02 Score=26.60 Aligned_cols=67 Identities=22% Similarity=0.337 Sum_probs=42.8
Q ss_pred CcEEEEEEEEeCCCCHHHHHHHHHHHHhcCCCcEEE--EeccCCCCCCCcccHHHHHHHHHHcCCCeeEecCCC
Q 026472 157 KIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVG--IDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEV 228 (238)
Q Consensus 157 ~i~vrlI~~~~R~~~~e~~~~~~~la~~~~~~~vvG--~dL~G~E~~~~~~~f~~~f~~ar~~gl~~t~HAGE~ 228 (238)
.+...+...+.+....+...+..++. ..+++| |-..+.. ......+..+|+.+++.|+++.+|+-+.
T Consensus 102 ~vd~~~~~~~~~~~~~~~l~e~~~l~----~~Gv~g~~f~~~~~~-~~~~~~l~~~~~~a~~~g~~v~iH~E~~ 170 (411)
T TIGR00857 102 LVDVHLYGGVTQGNQGKELTEAYELK----EAGAVGRMFTDDGSE-VQDILSMRRALEYAAIAGVPIALHAEDP 170 (411)
T ss_pred cccEEEEEEEecCCccccHHHHHHHH----HCCcEEEEEEeCCcc-cCCHHHHHHHHHHHHHcCCEEEEecCCH
Confidence 35566666776655443444433332 336888 6644332 2344678889999999999999998653
No 99
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=51.83 E-value=1.2e+02 Score=29.31 Aligned_cols=93 Identities=13% Similarity=0.141 Sum_probs=64.2
Q ss_pred cCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCCCcE-EEEEE-EEeCCCCHHHHHHHHHH
Q 026472 104 SIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIY-VRLLL-SIDRRETTEAAMETVKL 181 (238)
Q Consensus 104 ~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-vrlI~-~~~R~~~~e~~~~~~~l 181 (238)
.-+.+.+++++.+.+.++.++. .|.. +.+-. ...| .+++.+.++++.
T Consensus 199 kl~~s~ee~l~~~~~~V~~Ak~------------------------------~G~~~v~f~~EDa~R-td~efl~~~~~~ 247 (503)
T PLN03228 199 KLKKTKEEVIEMAVSSIRYAKS------------------------------LGFHDIQFGCEDGGR-SDKEFLCKILGE 247 (503)
T ss_pred HhCCCHHHHHHHHHHHHHHHHH------------------------------cCCceEEeccccccc-cCHHHHHHHHHH
Confidence 3478999999999999988753 2332 33322 3333 468888888888
Q ss_pred HHhcCCCcEEEEeccCCCCCCCcccHHHHHHHHHHc-----CCCeeEecCCCCC
Q 026472 182 ALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ-----GLQITLHCGEVHM 230 (238)
Q Consensus 182 a~~~~~~~vvG~dL~G~E~~~~~~~f~~~f~~ar~~-----gl~~t~HAGE~~~ 230 (238)
+.+...+.|.=-|-+| ...|.++...+...++. ++++-+|+--+.|
T Consensus 248 a~~~Gad~I~l~DTvG---~~tP~~v~~lV~~l~~~~~~~~~i~I~~H~HND~G 298 (503)
T PLN03228 248 AIKAGATSVGIADTVG---INMPHEFGELVTYVKANTPGIDDIVFSVHCHNDLG 298 (503)
T ss_pred HHhcCCCEEEEecCCC---CCCHHHHHHHHHHHHHHhccccCceeEecccCCcC
Confidence 8877555566666666 34566777777777654 4789999988876
No 100
>PRK00915 2-isopropylmalate synthase; Validated
Probab=51.16 E-value=1.6e+02 Score=28.46 Aligned_cols=109 Identities=17% Similarity=0.156 Sum_probs=72.4
Q ss_pred hcCCeEEEEeecCC--C-CccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCCCcEEEEE
Q 026472 87 SENIVYLELRTTPK--R-NESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYVRLL 163 (238)
Q Consensus 87 ~dgV~Y~Elr~~P~--~-~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vrlI 163 (238)
.-|+..+-+..+-. . ...-+.+.++.++.+.+.++.++. .|..+.
T Consensus 90 ~~~~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~------------------------------~g~~v~-- 137 (513)
T PRK00915 90 PAEAPRIHTFIATSPIHMEYKLKMSREEVLEMAVEAVKYARS------------------------------YTDDVE-- 137 (513)
T ss_pred cCCCCEEEEEECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHH------------------------------CCCeEE--
Confidence 45665555544322 1 123468999999999999988742 355544
Q ss_pred EEEeC--CCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCCCcccHHHHHHHHHHc-C----CCeeEecCCCCC
Q 026472 164 LSIDR--RETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ-G----LQITLHCGEVHM 230 (238)
Q Consensus 164 ~~~~R--~~~~e~~~~~~~la~~~~~~~vvG~dL~G~E~~~~~~~f~~~f~~ar~~-g----l~~t~HAGE~~~ 230 (238)
+++.= ..+++.+.++++.+.+...+.|+=-|.+|. ..|.++...++..++. + +++-+|+--+.|
T Consensus 138 f~~ed~~r~d~~~l~~~~~~~~~~Ga~~i~l~DTvG~---~~P~~~~~~i~~l~~~~~~~~~v~l~~H~HND~G 208 (513)
T PRK00915 138 FSAEDATRTDLDFLCRVVEAAIDAGATTINIPDTVGY---TTPEEFGELIKTLRERVPNIDKAIISVHCHNDLG 208 (513)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHcCCCEEEEccCCCC---CCHHHHHHHHHHHHHhCCCcccceEEEEecCCCC
Confidence 44421 256888888988888775555555566663 3567788888877764 2 889999988776
No 101
>cd08207 RLP_NonPhot Ribulose bisphosphate carboxylase like proteins from nonphototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=50.93 E-value=1.9e+02 Score=27.10 Aligned_cols=72 Identities=14% Similarity=0.242 Sum_probs=47.8
Q ss_pred HHHHHHHHhcCCeEE---EEeecCCCCccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCC
Q 026472 79 QEVVEDFASENIVYL---ELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRG 155 (238)
Q Consensus 79 ~~~~~~~a~dgV~Y~---Elr~~P~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (238)
.+++.+++.-||-++ |...+|.+. ++++.+.++.++++++.+ +
T Consensus 162 a~~~y~~~~GGvD~IKDDE~l~~q~~~-----p~~eRv~~~~~a~~~a~~-----------------------------e 207 (406)
T cd08207 162 AALVRQLAAAGIDFIKDDELLANPPYS-----PLDERVRAVMRVINDHAQ-----------------------------R 207 (406)
T ss_pred HHHHHHHHhCCCCcccccccCCCCCCC-----cHHHHHHHHHHHHHHHHH-----------------------------h
Confidence 344555566666665 665555443 678899999999998854 3
Q ss_pred CCcEEEEEEEEeCCCCHHHHHHHHHHHHhcC
Q 026472 156 KKIYVRLLLSIDRRETTEAAMETVKLALEMR 186 (238)
Q Consensus 156 ~~i~vrlI~~~~R~~~~e~~~~~~~la~~~~ 186 (238)
+|- +.++..+=.-++++..+..+.+.+.-
T Consensus 208 TG~--~~~y~~NiT~~~~em~~ra~~~~~~G 236 (406)
T cd08207 208 TGR--KVMYAFNITDDIDEMRRNHDLVVEAG 236 (406)
T ss_pred hCC--cceEEEecCCCHHHHHHHHHHHHHhC
Confidence 343 23455555666888888888887754
No 102
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=48.69 E-value=48 Score=27.81 Aligned_cols=57 Identities=18% Similarity=0.150 Sum_probs=35.3
Q ss_pred CCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCCCcccHHHHHHHHHHcCCCeeEec
Q 026472 169 RETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHC 225 (238)
Q Consensus 169 ~~~~e~~~~~~~la~~~~~~~vvG~dL~G~E~~~~~~~f~~~f~~ar~~gl~~t~HA 225 (238)
..+++++.+.++....+.....-+|.+.|.|.--.+..+..+.+.+++.|+++++.-
T Consensus 45 ~~s~e~i~~~i~~~~~~~~~~~~~I~~~GGEPll~~~~~~~li~~~~~~g~~~~i~T 101 (235)
T TIGR02493 45 EVTPEELIKEVGSYKDFFKASGGGVTFSGGEPLLQPEFLSELFKACKELGIHTCLDT 101 (235)
T ss_pred ECCHHHHHHHHHHhHHHHhcCCCeEEEeCcccccCHHHHHHHHHHHHHCCCCEEEEc
Confidence 356777666665544332111125677787764443334588899999999988863
No 103
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=48.66 E-value=2.4e+02 Score=26.73 Aligned_cols=110 Identities=12% Similarity=0.070 Sum_probs=67.5
Q ss_pred HHHHHHHHHHhcCCeEEEEeecCCCCccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCC
Q 026472 77 ITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGK 156 (238)
Q Consensus 77 ~~~~~~~~~a~dgV~Y~Elr~~P~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (238)
+..+.++.+++.|+..+-+..+.... +-+.+.++.++ +.
T Consensus 97 vv~~~v~~A~~~Gvd~irif~~lnd~-----------~n~~~~v~~ak------------------------------~~ 135 (448)
T PRK12331 97 VVESFVQKSVENGIDIIRIFDALNDV-----------RNLETAVKATK------------------------------KA 135 (448)
T ss_pred hHHHHHHHHHHCCCCEEEEEEecCcH-----------HHHHHHHHHHH------------------------------Hc
Confidence 56778888999999987775543321 12333444432 23
Q ss_pred CcEEEEEEEEeC--CCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCCCcccHHHHHHHHHHc-CCCeeEecCCCCC
Q 026472 157 KIYVRLLLSIDR--RETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ-GLQITLHCGEVHM 230 (238)
Q Consensus 157 ~i~vrlI~~~~R--~~~~e~~~~~~~la~~~~~~~vvG~dL~G~E~~~~~~~f~~~f~~ar~~-gl~~t~HAGE~~~ 230 (238)
|..+.+-+|..- ..+++...+.++.+.+..-+.|+=-|.+|-= .|.....+++..++. ++++-+|+--+.|
T Consensus 136 G~~v~~~i~~t~~p~~~~~~~~~~a~~l~~~Gad~I~i~Dt~G~l---~P~~v~~lv~alk~~~~~pi~~H~Hnt~G 209 (448)
T PRK12331 136 GGHAQVAISYTTSPVHTIDYFVKLAKEMQEMGADSICIKDMAGIL---TPYVAYELVKRIKEAVTVPLEVHTHATSG 209 (448)
T ss_pred CCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCC---CHHHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence 555554334332 2456666666666665544556666777743 445556666666653 8999999988887
No 104
>cd01297 D-aminoacylase D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics.
Probab=47.95 E-value=45 Score=30.85 Aligned_cols=59 Identities=17% Similarity=0.098 Sum_probs=39.1
Q ss_pred CCHHHHHHHHHHHHhcCCCcEEEEeccCCCC---CCCcccHHHHHHHHHHcCCCeeEecCCC
Q 026472 170 ETTEAAMETVKLALEMRDLGVVGIDLSGNPT---KGEWTTFLPALKFAREQGLQITLHCGEV 228 (238)
Q Consensus 170 ~~~e~~~~~~~la~~~~~~~vvG~dL~G~E~---~~~~~~f~~~f~~ar~~gl~~t~HAGE~ 228 (238)
-+++...++.++..+....+++||.....-. ..+...+..+|+.|++.|..+.+|+-+.
T Consensus 161 ~~~~~~~~~~~l~~~al~~Ga~g~~~~~~y~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~ 222 (415)
T cd01297 161 ATEEELAKMRELLREALEAGALGISTGLAYAPRLYAGTAELVALARVAARYGGVYQTHVRYE 222 (415)
T ss_pred CCHHHHHHHHHHHHHHHHCCCeEEEcccccCCcccCCHHHHHHHHHHHHHcCCEEEEEECcc
Confidence 3445555555554443345788887654221 2345788889999999999999999654
No 105
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=47.67 E-value=1.8e+02 Score=24.86 Aligned_cols=22 Identities=9% Similarity=0.018 Sum_probs=18.2
Q ss_pred HHHHHHHHHhcCCeEEEEeecC
Q 026472 78 TQEVVEDFASENIVYLELRTTP 99 (238)
Q Consensus 78 ~~~~~~~~a~dgV~Y~Elr~~P 99 (238)
..+.++.+++-|..++|+.+.+
T Consensus 18 ~~e~~~~~~~~G~~~iEl~~~~ 39 (284)
T PRK13210 18 WEERLVFAKELGFDFVEMSVDE 39 (284)
T ss_pred HHHHHHHHHHcCCCeEEEecCC
Confidence 3577888899999999998654
No 106
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=47.66 E-value=1.9e+02 Score=25.23 Aligned_cols=110 Identities=17% Similarity=0.122 Sum_probs=71.9
Q ss_pred HHHHHHHHHHhcCCeEEEEeecCCCCccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCC
Q 026472 77 ITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGK 156 (238)
Q Consensus 77 ~~~~~~~~~a~dgV~Y~Elr~~P~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (238)
+..+.++.+.+.|+..+-+-+ |... ++.+.+.++.++ +.
T Consensus 92 ~~~~di~~~~~~g~~~iri~~-~~~~----------~~~~~~~i~~ak------------------------------~~ 130 (275)
T cd07937 92 VVELFVEKAAKNGIDIFRIFD-ALND----------VRNLEVAIKAVK------------------------------KA 130 (275)
T ss_pred HHHHHHHHHHHcCCCEEEEee-cCCh----------HHHHHHHHHHHH------------------------------HC
Confidence 456677777788888866633 3221 455666666553 23
Q ss_pred CcEEEEEEEEe--CCCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCCCcccHHHHHHHHHHc-CCCeeEecCCCCC
Q 026472 157 KIYVRLLLSID--RRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ-GLQITLHCGEVHM 230 (238)
Q Consensus 157 ~i~vrlI~~~~--R~~~~e~~~~~~~la~~~~~~~vvG~dL~G~E~~~~~~~f~~~f~~ar~~-gl~~t~HAGE~~~ 230 (238)
|+.+.+-++.. -..+++...+.++.+.+...+.|.=-|.+| ...|.+....++..++. ++++-+|+-.+.|
T Consensus 131 G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G---~~~P~~v~~lv~~l~~~~~~~l~~H~Hnd~G 204 (275)
T cd07937 131 GKHVEGAICYTGSPVHTLEYYVKLAKELEDMGADSICIKDMAG---LLTPYAAYELVKALKKEVGLPIHLHTHDTSG 204 (275)
T ss_pred CCeEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCC---CCCHHHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence 66666534331 235778888888887777555566566666 34567778888887764 7999999988877
No 107
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=46.86 E-value=3e+02 Score=27.15 Aligned_cols=111 Identities=13% Similarity=0.105 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHhcCCeEEEEeecCCCCccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCC
Q 026472 76 RITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRG 155 (238)
Q Consensus 76 ~~~~~~~~~~a~dgV~Y~Elr~~P~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (238)
.+.+..++.+++.|+..+=+..+... ++-+..+++.++ +
T Consensus 91 dvv~~~v~~a~~~Gvd~irif~~lnd-----------~~n~~~~i~~ak------------------------------~ 129 (582)
T TIGR01108 91 DVVERFVKKAVENGMDVFRIFDALND-----------PRNLQAAIQAAK------------------------------K 129 (582)
T ss_pred hhHHHHHHHHHHCCCCEEEEEEecCc-----------HHHHHHHHHHHH------------------------------H
Confidence 46777888889999987555433321 133444554442 2
Q ss_pred CCcEEEEEEEEeC--CCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCCCcccHHHHHHHHHHc-CCCeeEecCCCCC
Q 026472 156 KKIYVRLLLSIDR--RETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ-GLQITLHCGEVHM 230 (238)
Q Consensus 156 ~~i~vrlI~~~~R--~~~~e~~~~~~~la~~~~~~~vvG~dL~G~E~~~~~~~f~~~f~~ar~~-gl~~t~HAGE~~~ 230 (238)
.|..+..-+|... ..+++...+.++.+.+..-+.|+==|.+|- ..|.....+++..++. ++++-+|+--+.|
T Consensus 130 ~G~~v~~~i~~t~~p~~~~~~~~~~~~~~~~~Gad~I~i~Dt~G~---~~P~~v~~lv~~lk~~~~~pi~~H~Hnt~G 204 (582)
T TIGR01108 130 HGAHAQGTISYTTSPVHTLETYLDLAEELLEMGVDSICIKDMAGI---LTPKAAYELVSALKKRFGLPVHLHSHATTG 204 (582)
T ss_pred cCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCC---cCHHHHHHHHHHHHHhCCCceEEEecCCCC
Confidence 3556665444433 245677777777666654455666677774 3455666677776654 7999999998887
No 108
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=46.62 E-value=1.9e+02 Score=26.18 Aligned_cols=87 Identities=16% Similarity=0.261 Sum_probs=53.1
Q ss_pred ChHHHHHHHHHHHHHHHhcCCeEEEEeec-CCCCccCCCC-HHHHHHHHHHHHHhhhhcccccccccccccccccccccc
Q 026472 70 DHATVTRITQEVVEDFASENIVYLELRTT-PKRNESIGMS-KRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMN 147 (238)
Q Consensus 70 ~~~~~~~~~~~~~~~~a~dgV~Y~Elr~~-P~~~~~~~~~-~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (238)
+++++.+++ ..++++.. +.|+|+=+| |.....+.+- ..++++.+.+++++.
T Consensus 107 ~~~~~~d~~-~~~~~~~~--ad~ielNiScPnt~g~~~l~~~~e~l~~l~~~vk~~------------------------ 159 (310)
T COG0167 107 SEEAWADYA-RLLEEAGD--ADAIELNISCPNTPGGRALGQDPELLEKLLEAVKAA------------------------ 159 (310)
T ss_pred cHHHHHHHH-HHHHhcCC--CCEEEEEccCCCCCChhhhccCHHHHHHHHHHHHhc------------------------
Confidence 455555554 33444433 999999988 7643323333 346777787777754
Q ss_pred ccccCCCCCCcEEEEEEEEeCCCCHHHHHHHHHHHHhcCCCcEEEEec
Q 026472 148 DACNGTRGKKIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDL 195 (238)
Q Consensus 148 ~~~~~~~~~~i~vrlI~~~~R~~~~e~~~~~~~la~~~~~~~vvG~dL 195 (238)
...++-+|+=- +.++..++.+.+.+..-++|+.++-
T Consensus 160 ------~~~Pv~vKl~P------~~~di~~iA~~~~~~g~Dgl~~~NT 195 (310)
T COG0167 160 ------TKVPVFVKLAP------NITDIDEIAKAAEEAGADGLIAINT 195 (310)
T ss_pred ------ccCceEEEeCC------CHHHHHHHHHHHHHcCCcEEEEEee
Confidence 33577777521 4556666666666665567777774
No 109
>COG1879 RbsB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=46.49 E-value=1.5e+02 Score=25.93 Aligned_cols=59 Identities=14% Similarity=0.194 Sum_probs=36.4
Q ss_pred EEEeCCCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCCCcccHHHHHHHHHHcCCCeeEecCCCC
Q 026472 164 LSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEVH 229 (238)
Q Consensus 164 ~~~~R~~~~e~~~~~~~la~~~~~~~vvG~dL~G~E~~~~~~~f~~~f~~ar~~gl~~t~HAGE~~ 229 (238)
....-..++..-...++.++..+ +-||-+.. .++..+.++.++|+++|++++.+-....
T Consensus 69 ~~~~~~~d~~~Q~~~i~~~ia~~---~daIiv~~----~d~~~~~~~v~~a~~aGIpVv~~d~~~~ 127 (322)
T COG1879 69 VIADAQNDVAKQIAQIEDLIAQG---VDAIIINP----VDPDALTPAVKKAKAAGIPVVTVDSDIP 127 (322)
T ss_pred EecccccChHHHHHHHHHHHHcC---CCEEEEcC----CChhhhHHHHHHHHHCCCcEEEEecCCC
Confidence 33333344444445566666443 44554443 2336789999999999999888765543
No 110
>cd01307 Met_dep_hydrolase_B Metallo-dependent hydrolases, subgroup B is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=45.33 E-value=97 Score=27.64 Aligned_cols=49 Identities=20% Similarity=0.162 Sum_probs=32.0
Q ss_pred CCcEEEEecc-CCCCC--CCcccHHHHHHHHHHcCCCeeEecCCCCC-hhHHH
Q 026472 187 DLGVVGIDLS-GNPTK--GEWTTFLPALKFAREQGLQITLHCGEVHM-SFECL 235 (238)
Q Consensus 187 ~~~vvG~dL~-G~E~~--~~~~~f~~~f~~ar~~gl~~t~HAGE~~~-~~~i~ 235 (238)
.++++||-.. ..+.. .....+..+++.+++.|+++.+|+++... .+.+.
T Consensus 128 ~~gi~gik~~~~~~~~~~~~~~~l~~~~~~a~~~~~pi~vH~~~~~~~~~~~~ 180 (338)
T cd01307 128 PDVIVGLKARASKSVVGEWGIKPLELAKKIAKEADLPLMVHIGSPPPILDEVV 180 (338)
T ss_pred cCcEEEEEEEeecccccccCCcHHHHHHHHHHHcCCCEEEEeCCCCCCHHHHH
Confidence 4568887662 11111 13455778888888999999999998664 34443
No 111
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=44.29 E-value=2.9e+02 Score=26.39 Aligned_cols=112 Identities=12% Similarity=0.097 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHhcCCeEEEEeecCCCCccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCC
Q 026472 75 TRITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTR 154 (238)
Q Consensus 75 ~~~~~~~~~~~a~dgV~Y~Elr~~P~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (238)
..+++..++.+++.|+..+-+..+... ++-+..+++.++
T Consensus 94 dDvv~~fv~~A~~~Gvd~irif~~lnd-----------~~n~~~~i~~ak------------------------------ 132 (467)
T PRK14041 94 DDVVELFVKKVAEYGLDIIRIFDALND-----------IRNLEKSIEVAK------------------------------ 132 (467)
T ss_pred chhhHHHHHHHHHCCcCEEEEEEeCCH-----------HHHHHHHHHHHH------------------------------
Confidence 356777888899999987666443321 334445555443
Q ss_pred CCCcEEEEEEEEeCC--CCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCCCcccHHHHHHHHHHc-CCCeeEecCCCCC
Q 026472 155 GKKIYVRLLLSIDRR--ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ-GLQITLHCGEVHM 230 (238)
Q Consensus 155 ~~~i~vrlI~~~~R~--~~~e~~~~~~~la~~~~~~~vvG~dL~G~E~~~~~~~f~~~f~~ar~~-gl~~t~HAGE~~~ 230 (238)
+.|..+..-+|.... .+++...+.++.+.+.--+.|+==|.+|-= .|.....+++..++. ++++-+|+--+.|
T Consensus 133 ~~G~~v~~~i~~t~~p~~t~e~~~~~a~~l~~~Gad~I~i~Dt~G~l---~P~~v~~Lv~~lk~~~~vpI~~H~Hnt~G 208 (467)
T PRK14041 133 KHGAHVQGAISYTVSPVHTLEYYLEFARELVDMGVDSICIKDMAGLL---TPKRAYELVKALKKKFGVPVEVHSHCTTG 208 (467)
T ss_pred HCCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEECCccCCc---CHHHHHHHHHHHHHhcCCceEEEecCCCC
Confidence 235555544443332 345666666665555544556666777743 455566666666653 7999999998887
No 112
>PF13918 PLDc_3: PLD-like domain
Probab=43.68 E-value=31 Score=28.55 Aligned_cols=20 Identities=25% Similarity=0.325 Sum_probs=16.8
Q ss_pred CCCcEEEEEEEEeCCCCHHH
Q 026472 155 GKKIYVRLLLSIDRRETTEA 174 (238)
Q Consensus 155 ~~~i~vrlI~~~~R~~~~e~ 174 (238)
+-|++||++++..++.+|..
T Consensus 131 ~R~V~VRlLIS~W~ht~p~~ 150 (177)
T PF13918_consen 131 ERGVKVRLLISCWKHTDPSM 150 (177)
T ss_pred HcCCeEEEEEeecCCCChhH
Confidence 34899999999999888753
No 113
>PRK07135 dnaE DNA polymerase III DnaE; Validated
Probab=43.67 E-value=18 Score=37.64 Aligned_cols=25 Identities=28% Similarity=0.535 Sum_probs=21.7
Q ss_pred CChhhhccc-----cCCCCCHHHHHHHHHH
Q 026472 7 MPKVELHAH-----LNGSIRDSTLLELARV 31 (238)
Q Consensus 7 lPK~eLH~H-----L~Gsi~~~tl~~la~~ 31 (238)
|+.++||+| |+|+++++.+++.|++
T Consensus 1 m~fv~LHvHS~ySlLDg~~~~~elv~~Ak~ 30 (973)
T PRK07135 1 MKLINLHTNTEYSFLSSTIKLDSLIKYAKE 30 (973)
T ss_pred CCccccccCccCcccccCCCHHHHHHHHHH
Confidence 457899999 5777999999999996
No 114
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=43.19 E-value=2.9e+02 Score=25.95 Aligned_cols=124 Identities=13% Similarity=0.161 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEeecCCC---CccCCCCHHHHHHHHHHHHHhhhhcccccccccccccccccccccccc
Q 026472 73 TVTRITQEVVEDFASENIVYLELRTTPKR---NESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDA 149 (238)
Q Consensus 73 ~~~~~~~~~~~~~a~dgV~Y~Elr~~P~~---~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (238)
.+.+....-++.+..-++-.+-+..+-.. ....+.|.+++++.+.+.++-++
T Consensus 73 ~~~~~~~~~~ea~~~a~~~~i~if~~tSd~h~~~~~~~t~~e~l~~~~~~v~ya~------------------------- 127 (409)
T COG0119 73 ALARAIKRDIEALLEAGVDRIHIFIATSDLHLRYKLKKTREEVLERAVDAVEYAR------------------------- 127 (409)
T ss_pred hhHHhHHhhHHHHHhCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHH-------------------------
Confidence 45566666777788888887777655332 12346899999999999998874
Q ss_pred ccCCCCCCcEEEE-EEEEeCCCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCCCcccHHHHHHHHHHc-C--CCeeEec
Q 026472 150 CNGTRGKKIYVRL-LLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ-G--LQITLHC 225 (238)
Q Consensus 150 ~~~~~~~~i~vrl-I~~~~R~~~~e~~~~~~~la~~~~~~~vvG~dL~G~E~~~~~~~f~~~f~~ar~~-g--l~~t~HA 225 (238)
+.|+++++ .-+.. ..+++.+.++++.+....-..|.--|-+| ...|..+.+.++..++. . .++-+|+
T Consensus 128 -----~~g~~~~~~~Ed~~-rt~~~~l~~~~~~~~~~ga~~i~l~DTvG---~~~P~~~~~~i~~l~~~v~~~~~l~~H~ 198 (409)
T COG0119 128 -----DHGLEVRFSAEDAT-RTDPEFLAEVVKAAIEAGADRINLPDTVG---VATPNEVADIIEALKANVPNKVILSVHC 198 (409)
T ss_pred -----HcCCeEEEEeeccc-cCCHHHHHHHHHHHHHcCCcEEEECCCcC---ccCHHHHHHHHHHHHHhCCCCCeEEEEe
Confidence 35677775 33333 47888999999988855445566666666 34567888888888764 3 8899999
Q ss_pred CCCCC
Q 026472 226 GEVHM 230 (238)
Q Consensus 226 GE~~~ 230 (238)
--..|
T Consensus 199 HnD~G 203 (409)
T COG0119 199 HNDLG 203 (409)
T ss_pred cCCcc
Confidence 88777
No 115
>PTZ00310 AMP deaminase; Provisional
Probab=42.93 E-value=14 Score=39.79 Aligned_cols=28 Identities=29% Similarity=0.379 Sum_probs=25.2
Q ss_pred hhcCChhhhccccCCCCCHHHHHHHHHH
Q 026472 4 FASMPKVELHAHLNGSIRDSTLLELARV 31 (238)
Q Consensus 4 ~~~lPK~eLH~HL~Gsi~~~tl~~la~~ 31 (238)
+...+|||.|+|+.+|++...|++..++
T Consensus 202 Fyn~rKVDthvh~sacMnqk~LLrFIk~ 229 (1453)
T PTZ00310 202 FSPCTKVDNAVLLSTSVDAQELLEFVVT 229 (1453)
T ss_pred eeecceeecccchhccCCHHHHHHHHHH
Confidence 4678999999999999999999998775
No 116
>PRK06740 histidinol-phosphatase; Validated
Probab=42.61 E-value=41 Score=30.47 Aligned_cols=76 Identities=17% Similarity=0.228 Sum_probs=42.1
Q ss_pred hhhhccccC-CCCCHHHHHHHHHHhccCCCCCchhhhHHHhcCCCCHHHHHHHhHHHHhhcCChHHHHHHHHHHHHHHHh
Q 026472 9 KVELHAHLN-GSIRDSTLLELARVLGEKGVIVFSDVEHVIMKSDRSLHEVFKLFDLIHVLTTDHATVTRITQEVVEDFAS 87 (238)
Q Consensus 9 K~eLH~HL~-Gsi~~~tl~~la~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~f~~~~~l~~~~~~~~~~~~~~~~~~a~ 87 (238)
|+|-|+||+ |-.|..+|.+.+... ..+....+ ...+.......-..++.-++.-++=+.-+.++++.+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yv~~Ai~ 72 (331)
T PRK06740 2 KVDYHIHLEEGPYSIGWLAKINEAL-----QHYEPLKE----AKHSMEWLVKTQERLQRRVKEGPYTTKWIDLYLEEALR 72 (331)
T ss_pred cceeEEeeccCccchhHHHHhhhhh-----hccCcccc----ccchHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHH
Confidence 799999996 677777877665531 11110000 11223322233334444444444444557888899999
Q ss_pred cCCeEE
Q 026472 88 ENIVYL 93 (238)
Q Consensus 88 dgV~Y~ 93 (238)
.|..-+
T Consensus 73 ~G~~~i 78 (331)
T PRK06740 73 KGIKEV 78 (331)
T ss_pred CCCcEE
Confidence 887643
No 117
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=42.49 E-value=2.4e+02 Score=27.09 Aligned_cols=92 Identities=15% Similarity=0.113 Sum_probs=63.0
Q ss_pred cCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCCCcEEEEEEEEeC--CCCHHHHHHHHHH
Q 026472 104 SIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYVRLLLSIDR--RETTEAAMETVKL 181 (238)
Q Consensus 104 ~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vrlI~~~~R--~~~~e~~~~~~~l 181 (238)
.-+.|.+++++.+.+.++.++. .|..+. +++.= ..+++.+.++++.
T Consensus 107 ~l~~s~~e~l~~~~~~v~~a~~------------------------------~g~~v~--f~~Ed~~r~d~~~l~~~~~~ 154 (494)
T TIGR00973 107 KLKMTRDEVLERAVGMVKYAKN------------------------------FTDDVE--FSCEDAGRTEIPFLARIVEA 154 (494)
T ss_pred HhCCCHHHHHHHHHHHHHHHHH------------------------------cCCeEE--EEcCCCCCCCHHHHHHHHHH
Confidence 3478999999999999987753 344433 33331 2478889999988
Q ss_pred HHhcCCCcEEEEeccCCCCCCCcccHHHHHHHHHHc-----CCCeeEecCCCCC
Q 026472 182 ALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ-----GLQITLHCGEVHM 230 (238)
Q Consensus 182 a~~~~~~~vvG~dL~G~E~~~~~~~f~~~f~~ar~~-----gl~~t~HAGE~~~ 230 (238)
+.+...+.|+==|.+| ...|..+...++..++. .+++-+|+--+.|
T Consensus 155 ~~~~Ga~~i~l~DTvG---~~~P~~~~~~i~~l~~~~~~~~~v~l~~H~HND~G 205 (494)
T TIGR00973 155 AINAGATTINIPDTVG---YALPAEYGNLIKGLRENVPNIDKAILSVHCHNDLG 205 (494)
T ss_pred HHHcCCCEEEeCCCCC---CCCHHHHHHHHHHHHHhhccccCceEEEEeCCCCC
Confidence 8877555454445555 34567777888777654 3679999987766
No 118
>TIGR00856 pyrC_dimer dihydroorotase, homodimeric type. This homodimeric form of dihydroorotase is less common in microbial genomes than a related dihydroorotase that appears in a complex with aspartyltranscarbamoylase or as a homologous domain in multifunctional proteins of pyrimidine biosynthesis in higher eukaryotes.
Probab=41.86 E-value=45 Score=30.26 Aligned_cols=40 Identities=20% Similarity=0.283 Sum_probs=28.7
Q ss_pred cEEEEeccCC----CCCC---CcccHHHHHHHHHHcCCCeeEecCCC
Q 026472 189 GVVGIDLSGN----PTKG---EWTTFLPALKFAREQGLQITLHCGEV 228 (238)
Q Consensus 189 ~vvG~dL~G~----E~~~---~~~~f~~~f~~ar~~gl~~t~HAGE~ 228 (238)
+++||-+--. .... +...+.++|+.+++.|+++.+||+..
T Consensus 92 Gv~g~Klf~~~~~~~~~~~v~dd~~l~~~~e~~~e~g~~v~vHaEd~ 138 (341)
T TIGR00856 92 VVRAVKLYPAGATTNSSHGVTDIDAIMPVLEAMEKIGLPLLLHGEVT 138 (341)
T ss_pred CeEEEEEccCCcccCCCcCCCCHHHHHHHHHHHHHcCCeEEEeecCC
Confidence 6888876421 1111 12458889999999999999999875
No 119
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=41.63 E-value=2.9e+02 Score=25.51 Aligned_cols=63 Identities=16% Similarity=0.170 Sum_probs=37.1
Q ss_pred CcEEEEEEEEeCCCCHHHHHHHHHHHHhcCCCcEEEEec-----c-CCCCCCCcccHHHHHHH-HHHcCCCeeE
Q 026472 157 KIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDL-----S-GNPTKGEWTTFLPALKF-AREQGLQITL 223 (238)
Q Consensus 157 ~i~vrlI~~~~R~~~~e~~~~~~~la~~~~~~~vvG~dL-----~-G~E~~~~~~~f~~~f~~-ar~~gl~~t~ 223 (238)
.|.+++++.-.-+.+++++.++++++..+. +.++| . +..-..|..+.+..|+. +++.|+++|+
T Consensus 278 ~V~ieyvLI~GvNDs~eda~~L~~~l~~~~----~~VnlIpyn~~~~~~~~~ps~e~i~~F~~~L~~~Gi~vtv 347 (368)
T PRK14456 278 PVTLVYMLLEGINDSPEDARKLIRFASRFF----CKINLIDYNSIVNIKFEPVCSSTRERFRDRLLDAGLQVTV 347 (368)
T ss_pred eEEEEEEEEcCCCCCHHHHHHHHHHHhcCC----CeeEEeeeccCCCCCCCCCCHHHHHHHHHHHHHCCCcEEe
Confidence 455665555444567788888888887642 23333 1 22222333455555554 6778999887
No 120
>PRK09061 D-glutamate deacylase; Validated
Probab=41.61 E-value=62 Score=31.07 Aligned_cols=58 Identities=21% Similarity=0.276 Sum_probs=39.5
Q ss_pred CHHHHHHHHHHHHhcCCCcEEEEec--cCCCCCCCcccHHHHHHHHHHcCCCeeEecCCCC
Q 026472 171 TTEAAMETVKLALEMRDLGVVGIDL--SGNPTKGEWTTFLPALKFAREQGLQITLHCGEVH 229 (238)
Q Consensus 171 ~~e~~~~~~~la~~~~~~~vvG~dL--~G~E~~~~~~~f~~~f~~ar~~gl~~t~HAGE~~ 229 (238)
++++..++.++..+....+++||.. .+.+ .-+...+..+++.|++.|.+++.|+-+..
T Consensus 164 t~~el~~m~~ll~~al~~Ga~gis~~~~y~p-~~~~~eL~~l~~~A~~~g~~v~~H~e~~~ 223 (509)
T PRK09061 164 TPAELAEILELLEQGLDEGALGIGIGAGYAP-GTGHKEYLELARLAARAGVPTYTHVRYLS 223 (509)
T ss_pred CHHHHHHHHHHHHHHHHCCCCEEecCCccCC-CCCHHHHHHHHHHHHHcCCEEEEEecCcc
Confidence 4566555555554333446888875 2332 23557789999999999999999998754
No 121
>PLN02428 lipoic acid synthase
Probab=41.61 E-value=2.7e+02 Score=25.62 Aligned_cols=71 Identities=23% Similarity=0.200 Sum_probs=44.9
Q ss_pred CCCcEEEEEEEEeCCCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCC--C------CcccHHHHHHHHHHcCC-------
Q 026472 155 GKKIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTK--G------EWTTFLPALKFAREQGL------- 219 (238)
Q Consensus 155 ~~~i~vrlI~~~~R~~~~e~~~~~~~la~~~~~~~vvG~dL~G~E~~--~------~~~~f~~~f~~ar~~gl------- 219 (238)
+..+...+|+.+ +.+.++..+.++.+.+..-+ ++-|+-.=.+.. . +|.+|...=+.|.+.|+
T Consensus 246 Gi~tkSg~MvGL--GET~Edv~e~l~~Lrelgvd-~vtigqyL~Ps~~h~~v~~~v~p~~f~~~~~~~~~~gf~~v~sgp 322 (349)
T PLN02428 246 GLLTKTSIMLGL--GETDEEVVQTMEDLRAAGVD-VVTFGQYLRPTKRHLPVKEYVTPEKFEFWREYGEEMGFRYVASGP 322 (349)
T ss_pred CCeEEEeEEEec--CCCHHHHHHHHHHHHHcCCC-EEeeccccCCCcceeeeecccCHHHHHHHHHHHHHcCCceEEecC
Confidence 334556788877 68889999999988877654 555544323332 1 34556555556666664
Q ss_pred --CeeEecCCC
Q 026472 220 --QITLHCGEV 228 (238)
Q Consensus 220 --~~t~HAGE~ 228 (238)
+-..||+|.
T Consensus 323 ~vrssy~a~~~ 333 (349)
T PLN02428 323 LVRSSYKAGEF 333 (349)
T ss_pred cccchhhhHHH
Confidence 445677764
No 122
>PRK06151 N-ethylammeline chlorohydrolase; Provisional
Probab=40.99 E-value=94 Score=29.46 Aligned_cols=28 Identities=25% Similarity=0.298 Sum_probs=23.8
Q ss_pred CCcccHHHHHHHHHHcCCCeeEecCCCC
Q 026472 202 GEWTTFLPALKFAREQGLQITLHCGEVH 229 (238)
Q Consensus 202 ~~~~~f~~~f~~ar~~gl~~t~HAGE~~ 229 (238)
.+...+..+++.|++.|+++.+|+.|..
T Consensus 218 ~s~e~l~~~~~~A~~~g~~v~~H~~e~~ 245 (488)
T PRK06151 218 CTVDLLRRTAAAARELGCPVRLHCAQGV 245 (488)
T ss_pred CCHHHHHHHHHHHHHCCCcEEEEECCch
Confidence 4557788899999999999999998843
No 123
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=40.64 E-value=3.7e+02 Score=26.52 Aligned_cols=111 Identities=18% Similarity=0.114 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHhcCCeEEEEeecCCCCccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCC
Q 026472 76 RITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRG 155 (238)
Q Consensus 76 ~~~~~~~~~~a~dgV~Y~Elr~~P~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (238)
.+.+..++.+++.|+..+=+..+... ++-+..+++.++ +
T Consensus 96 ~vv~~~v~~A~~~Gvd~irif~~lnd-----------~~n~~~~i~~ak------------------------------~ 134 (592)
T PRK09282 96 DVVEKFVEKAAENGIDIFRIFDALND-----------VRNMEVAIKAAK------------------------------K 134 (592)
T ss_pred hhhHHHHHHHHHCCCCEEEEEEecCh-----------HHHHHHHHHHHH------------------------------H
Confidence 46777888889999987555433221 233444454443 2
Q ss_pred CCcEEEEEEEEeCC--CCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCCCcccHHHHHHHHHHc-CCCeeEecCCCCC
Q 026472 156 KKIYVRLLLSIDRR--ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ-GLQITLHCGEVHM 230 (238)
Q Consensus 156 ~~i~vrlI~~~~R~--~~~e~~~~~~~la~~~~~~~vvG~dL~G~E~~~~~~~f~~~f~~ar~~-gl~~t~HAGE~~~ 230 (238)
.|..+..-+|.... .+++...+.++.+.+..-+.|+==|.+|- ..|.....+++..++. ++++-+|+--+.|
T Consensus 135 ~G~~v~~~i~~t~~p~~t~~~~~~~a~~l~~~Gad~I~i~Dt~G~---~~P~~~~~lv~~lk~~~~~pi~~H~Hnt~G 209 (592)
T PRK09282 135 AGAHVQGTISYTTSPVHTIEKYVELAKELEEMGCDSICIKDMAGL---LTPYAAYELVKALKEEVDLPVQLHSHCTSG 209 (592)
T ss_pred cCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEECCcCCC---cCHHHHHHHHHHHHHhCCCeEEEEEcCCCC
Confidence 35555544444442 35666666666666554455666677774 3456667777777664 7999999988887
No 124
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=39.98 E-value=2.4e+02 Score=24.24 Aligned_cols=72 Identities=17% Similarity=0.020 Sum_probs=49.2
Q ss_pred CCcEEEEEEEEeCCCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCCCcccHHHHHHHHHHc-CC-CeeEecCCCCC
Q 026472 156 KKIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ-GL-QITLHCGEVHM 230 (238)
Q Consensus 156 ~~i~vrlI~~~~R~~~~e~~~~~~~la~~~~~~~vvG~dL~G~E~~~~~~~f~~~f~~ar~~-gl-~~t~HAGE~~~ 230 (238)
.|+++.+-++..-..+++...+.++.+.+...+.|.=-|..| ...|.+....++..++. +. ++-+|+--+.|
T Consensus 124 ~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i~l~DT~G---~~~P~~v~~lv~~l~~~~~~~~l~~H~Hn~~G 197 (263)
T cd07943 124 LGMDVVGFLMMSHMASPEELAEQAKLMESYGADCVYVTDSAG---AMLPDDVRERVRALREALDPTPVGFHGHNNLG 197 (263)
T ss_pred CCCeEEEEEEeccCCCHHHHHHHHHHHHHcCCCEEEEcCCCC---CcCHHHHHHHHHHHHHhCCCceEEEEecCCcc
Confidence 366666544322236788888888877776555565556666 44567788888888764 65 89999988776
No 125
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=39.83 E-value=1.1e+02 Score=24.36 Aligned_cols=51 Identities=25% Similarity=0.283 Sum_probs=36.3
Q ss_pred CCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCCCcccHHHHHHHHHHcCCCeeEecC
Q 026472 170 ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCG 226 (238)
Q Consensus 170 ~~~e~~~~~~~la~~~~~~~vvG~dL~G~E~~~~~~~f~~~f~~ar~~gl~~t~HAG 226 (238)
.+.++..+.++. ..+ .+-|+-+.|.| -.+....++++.+++.|+++.+.-|
T Consensus 46 lt~eel~~~I~~---~~~-~~~gVt~SGGE--l~~~~l~~ll~~lk~~Gl~i~l~Tg 96 (147)
T TIGR02826 46 LTPEYLTKTLDK---YRS-LISCVLFLGGE--WNREALLSLLKIFKEKGLKTCLYTG 96 (147)
T ss_pred CCHHHHHHHHHH---hCC-CCCEEEEechh--cCHHHHHHHHHHHHHCCCCEEEECC
Confidence 455555555443 322 25699999999 4446678889999999999988876
No 126
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=39.52 E-value=28 Score=30.15 Aligned_cols=37 Identities=24% Similarity=0.487 Sum_probs=31.5
Q ss_pred cEEEEeccCCCCC--------CCcccHHHHHHHHHHcCCCeeEec
Q 026472 189 GVVGIDLSGNPTK--------GEWTTFLPALKFAREQGLQITLHC 225 (238)
Q Consensus 189 ~vvG~dL~G~E~~--------~~~~~f~~~f~~ar~~gl~~t~HA 225 (238)
.||-+|++|+++- ....+|...|...++.|+++++|-
T Consensus 112 dvvsLDfvgDn~vIk~vy~l~ksv~dyl~~l~~L~e~~irvvpHi 156 (275)
T COG1856 112 DVVSLDFVGDNDVIKRVYKLPKSVEDYLRSLLLLKENGIRVVPHI 156 (275)
T ss_pred cEEEEeecCChHHHHHHHcCCccHHHHHHHHHHHHHcCceeceeE
Confidence 3999999999984 134789999999999999999995
No 127
>TIGR02491 NrdG anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055) and utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin ) to produce a glycine-centered radical in the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487). The two components form an alpha-2/beta-2 heterodimer.
Probab=39.15 E-value=1e+02 Score=24.41 Aligned_cols=55 Identities=18% Similarity=0.128 Sum_probs=36.7
Q ss_pred CCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCCCc--ccHHHHHHHHHHc-CCC-eeEecC
Q 026472 170 ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEW--TTFLPALKFAREQ-GLQ-ITLHCG 226 (238)
Q Consensus 170 ~~~e~~~~~~~la~~~~~~~vvG~dL~G~E~~~~~--~~f~~~f~~ar~~-gl~-~t~HAG 226 (238)
.+.+...++++.+.+.+ .+-||-+.|.|.--.+ ..+.++++.+++. |++ +....|
T Consensus 46 ~~~~~~~~i~~~l~~~~--~~~gVt~sGGEPllq~~~~~l~~ll~~~k~~~~~~~~~~~tG 104 (154)
T TIGR02491 46 FTEALEKEIIRDLNDNP--LIDGLTLSGGDPLYPRNVEELIELVKKIKAEFPEKDIWLWTG 104 (154)
T ss_pred CCHHHHHHHHHHHHhcC--CcCeEEEeChhhCCCCCHHHHHHHHHHHHHhCCCCCEEEeeC
Confidence 45555666666655443 3668999999976544 6778888999876 665 444444
No 128
>PRK01060 endonuclease IV; Provisional
Probab=38.87 E-value=2e+02 Score=24.58 Aligned_cols=43 Identities=12% Similarity=0.097 Sum_probs=28.3
Q ss_pred HHHHHHHHHhcCCeEEEEeec-CCCCccCCCCHHHHHHHHHHHHH
Q 026472 78 TQEVVEDFASENIVYLELRTT-PKRNESIGMSKRSYMDAVVEGLR 121 (238)
Q Consensus 78 ~~~~~~~~a~dgV~Y~Elr~~-P~~~~~~~~~~~~~l~~v~~~~~ 121 (238)
+.++++.+++-|..++||... |.......++.++ ++.+.+.++
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~~p~~~~~~~~~~~~-~~~lk~~~~ 57 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTGNPQQWKRKPLEELN-IEAFKAACE 57 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCcCCCCCHHH-HHHHHHHHH
Confidence 557889999999999999887 5443333344333 455555544
No 129
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=37.64 E-value=3.8e+02 Score=25.73 Aligned_cols=111 Identities=14% Similarity=0.074 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHhcCCeEEEEeecCCCCccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCC
Q 026472 76 RITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRG 155 (238)
Q Consensus 76 ~~~~~~~~~~a~dgV~Y~Elr~~P~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (238)
.+++.+++.+++.|+..+=+.... +. ++.+...++.++ +
T Consensus 105 dvv~~fv~~a~~~Gidi~Rifd~l--------nd---~~n~~~ai~~ak------------------------------~ 143 (468)
T PRK12581 105 DIVDKFISLSAQNGIDVFRIFDAL--------ND---PRNIQQALRAVK------------------------------K 143 (468)
T ss_pred hHHHHHHHHHHHCCCCEEEEcccC--------CC---HHHHHHHHHHHH------------------------------H
Confidence 466777999999999985442211 11 344444444432 1
Q ss_pred CCcEE--EEEEEEeCCCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCCCcccHHHHHHHHHHc-CCCeeEecCCCCC
Q 026472 156 KKIYV--RLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ-GLQITLHCGEVHM 230 (238)
Q Consensus 156 ~~i~v--rlI~~~~R~~~~e~~~~~~~la~~~~~~~vvG~dL~G~E~~~~~~~f~~~f~~ar~~-gl~~t~HAGE~~~ 230 (238)
.|..+ -+-++..-..+.+...+.++.+.+.--+.|+=-|.+|-= .|......++..++. ++++-+|+--+.|
T Consensus 144 ~G~~~~~~i~yt~sp~~t~~y~~~~a~~l~~~Gad~I~IkDtaG~l---~P~~v~~Lv~alk~~~~~pi~~H~Hnt~G 218 (468)
T PRK12581 144 TGKEAQLCIAYTTSPVHTLNYYLSLVKELVEMGADSICIKDMAGIL---TPKAAKELVSGIKAMTNLPLIVHTHATSG 218 (468)
T ss_pred cCCEEEEEEEEEeCCcCcHHHHHHHHHHHHHcCCCEEEECCCCCCc---CHHHHHHHHHHHHhccCCeEEEEeCCCCc
Confidence 24443 333333333344556666666655544556666777743 445555666666553 6999999988887
No 130
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=37.10 E-value=2.7e+02 Score=23.89 Aligned_cols=22 Identities=9% Similarity=0.046 Sum_probs=17.4
Q ss_pred HHHHHHHHHhcCCeEEEEeecC
Q 026472 78 TQEVVEDFASENIVYLELRTTP 99 (238)
Q Consensus 78 ~~~~~~~~a~dgV~Y~Elr~~P 99 (238)
..+.++.+++-|..++|+...+
T Consensus 18 ~~e~l~~~~~~G~~~VEl~~~~ 39 (279)
T TIGR00542 18 WLERLQLAKTCGFDFVEMSVDE 39 (279)
T ss_pred HHHHHHHHHHcCCCEEEEecCC
Confidence 3466788889999999997654
No 131
>PF07969 Amidohydro_3: Amidohydrolase family; InterPro: IPR013108 Amidohydrolases are a diverse superfamily of enzymes which catalyse the hydrolysis of amide or amine bonds in a large number of different substrates including urea, cytosine, AMP, formylmethanofuran, etc [, ]. Also included in this superfamily are the phopshotriesterase enzymes, which hydrolyse P-O bonds. Members participate in a large number of processes including nucleotide metabolism, detoxification and neuronal development. They use a variety of divalent metal cofactors for catalysis: for example adenosine deaminase binds a single zinc ion, phopsphotriesterase binds two, while urease binds nickel. It has been postulated that since some of these proteins, such as those some of those involved in neuronal devlopment, appear to have lost their metal-binding centres, their function may simply be to bind, but not hydrolyse, their target molecules. This entry represents a subset of amidohydrolase domains that participate in different functions including cytosine degradation, atrazine degradation and other metabolic processes. The structure of the domain from Escherichia coli has been studied, and like other amidohydrolases it forms a classical alpha-beta TIM-barrel fold []. The active site is located in the mouth of the enzyme barrel and contains a bound iron ion that coordinates a hydroxyl nucleophile. Substrate binding involves a significant conformational change that sequesters the reaction complex from solvent.; PDB: 4F0R_A 4F0S_A 1V4Y_A 1M7J_A 1RK5_A 1RJP_A 1RJR_A 1RJQ_A 1RK6_A 1V51_A ....
Probab=36.82 E-value=2e+02 Score=26.00 Aligned_cols=31 Identities=10% Similarity=0.067 Sum_probs=23.4
Q ss_pred HHHhhcCChHHHHHHHHHHHHHHHhcCCeEE
Q 026472 63 LIHVLTTDHATVTRITQEVVEDFASENIVYL 93 (238)
Q Consensus 63 ~~~~l~~~~~~~~~~~~~~~~~~a~dgV~Y~ 93 (238)
.+.....+.+.+.+.++...+.+.+-||.-+
T Consensus 117 ~~~~~~~~~~~~~~~l~~~~~~~~a~GiTt~ 147 (404)
T PF07969_consen 117 AIPATAAELEEMREALREAAMAAGAYGITTV 147 (404)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHCHTCEEEE
T ss_pred hCccccCCHHHHHHHHHHHHHHhcCCCeEEe
Confidence 4455456677788888888999999998644
No 132
>COG0613 Predicted metal-dependent phosphoesterases (PHP family) [General function prediction only]
Probab=36.18 E-value=26 Score=30.62 Aligned_cols=28 Identities=36% Similarity=0.582 Sum_probs=22.9
Q ss_pred Chhhhcccc---CCCCCHHHHHHHHHHhccCCCC
Q 026472 8 PKVELHAHL---NGSIRDSTLLELARVLGEKGVI 38 (238)
Q Consensus 8 PK~eLH~HL---~Gsi~~~tl~~la~~~~~~~~~ 38 (238)
-|+|||||= +|+.+|.-+++.|.. .|+.
T Consensus 2 ~~~DLHvHSt~Sdg~~~p~~vv~~A~~---~g~~ 32 (258)
T COG0613 2 MKADLHVHTTASDGGLTPREVVERAKA---KGVD 32 (258)
T ss_pred cceeeeEecccCCCCCCHHHHHHHHHH---cCCC
Confidence 369999997 588999999999985 5654
No 133
>COG2918 GshA Gamma-glutamylcysteine synthetase [Coenzyme metabolism]
Probab=36.04 E-value=51 Score=31.37 Aligned_cols=33 Identities=21% Similarity=0.337 Sum_probs=24.4
Q ss_pred HHHHHHHhcCCeEEEEeec-CCCCccCCCCHHHH
Q 026472 80 EVVEDFASENIVYLELRTT-PKRNESIGMSKRSY 112 (238)
Q Consensus 80 ~~~~~~a~dgV~Y~Elr~~-P~~~~~~~~~~~~~ 112 (238)
.-++.+++-||.|+|+|.- -.-+...|++.+++
T Consensus 314 ~~~~aL~~~GiEYiEvRslDiNPF~piGIs~~q~ 347 (518)
T COG2918 314 SPSDALLRRGIEYIEVRSLDINPFSPIGISEDQA 347 (518)
T ss_pred ChHHHHHhcCceEEEEEeeccCCCCcCCCCHHHH
Confidence 4567899999999999953 22235678888774
No 134
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=35.24 E-value=67 Score=27.94 Aligned_cols=53 Identities=34% Similarity=0.433 Sum_probs=39.1
Q ss_pred HHHHHHHhcCCCcEEEEeccCCCCC-C--CcccHHHHHHHHHHc-CCCeeEecCCCC
Q 026472 177 ETVKLALEMRDLGVVGIDLSGNPTK-G--EWTTFLPALKFAREQ-GLQITLHCGEVH 229 (238)
Q Consensus 177 ~~~~la~~~~~~~vvG~dL~G~E~~-~--~~~~f~~~f~~ar~~-gl~~t~HAGE~~ 229 (238)
..++-+.++...+.-|+=|+|.-+. + |.-.|.+..+..++. |+.+++|.|=..
T Consensus 43 ~l~k~~~el~kkGy~g~llSGGm~srg~VPl~kf~d~lK~lke~~~l~inaHvGfvd 99 (275)
T COG1856 43 SLLKRCMELEKKGYEGCLLSGGMDSRGKVPLWKFKDELKALKERTGLLINAHVGFVD 99 (275)
T ss_pred HHHHHHHHHHhcCceeEEEeCCcCCCCCccHHHHHHHHHHHHHhhCeEEEEEeeecc
Confidence 3445555666678999999986664 2 557788888877754 999999999765
No 135
>PRK14453 chloramphenicol/florfenicol resistance protein; Provisional
Probab=35.21 E-value=3.5e+02 Score=24.68 Aligned_cols=69 Identities=13% Similarity=0.209 Sum_probs=42.8
Q ss_pred CCcEEEEEEEEeCCCCHHHHHHHHHHHHhcCC-CcEEEEecc-----CCC---CCCCcccHHHHHH-HHHHcCCCeeEe
Q 026472 156 KKIYVRLLLSIDRRETTEAAMETVKLALEMRD-LGVVGIDLS-----GNP---TKGEWTTFLPALK-FAREQGLQITLH 224 (238)
Q Consensus 156 ~~i~vrlI~~~~R~~~~e~~~~~~~la~~~~~-~~vvG~dL~-----G~E---~~~~~~~f~~~f~-~ar~~gl~~t~H 224 (238)
..|.+++++.-.-+.+++++.+.++++..... +.++.++|- |.. ...|..+.+..|. ..++.|+++|+=
T Consensus 247 ~~V~iry~LI~GvNDs~e~a~~L~~~lk~l~~~~~~~~VnLIPyn~~~~~~~~~~~ps~e~v~~f~~~L~~~Gi~vtiR 325 (347)
T PRK14453 247 RKVYIAYIMLEGVNDSKEHAEAVVGLLRNRGSWEHLYHVNLIPYNSTDKTPFKFQSSSAGQIKQFCSTLKSAGISVTVR 325 (347)
T ss_pred CcEEEEEEeECCCCCCHHHHHHHHHHHhhccccCCcceEEEecCCCCCCCCccCCCCCHHHHHHHHHHHHHCCCcEEEe
Confidence 35777776666566788899999998876531 235666662 221 1223344444444 466779988864
No 136
>cd08627 PI-PLCc_gamma1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw
Probab=35.06 E-value=3e+02 Score=23.79 Aligned_cols=72 Identities=11% Similarity=0.069 Sum_probs=44.9
Q ss_pred HHHHHHHhcCCeEEEEeecCCCC------c----cCCCCHHHHHHHHHHHHHhhhhcccccccccccccccccccccccc
Q 026472 80 EVVEDFASENIVYLELRTTPKRN------E----SIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDA 149 (238)
Q Consensus 80 ~~~~~~a~dgV~Y~Elr~~P~~~------~----~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (238)
+...++...|++++|+-.-+... + ...+++++++.+|.+-. |.
T Consensus 33 e~y~~aL~~GcR~vElD~wdg~dgePvV~Hg~tlts~i~f~dv~~~I~~~A--F~------------------------- 85 (229)
T cd08627 33 EAYARCLRMGCRCIELDCWDGPDGMPVIYHGHTLTTKIKFSDVLHTIKEHA--FV------------------------- 85 (229)
T ss_pred HHHHHHHHhCCCEEEEEeecCCCCCEEEEeCCcCCCceEHHHHHHHHHHhh--cc-------------------------
Confidence 44555666899999999765421 1 12356677777765431 11
Q ss_pred ccCCCCCCcEEEEEEEEeCCCCHHHHHHHHHHHHhc
Q 026472 150 CNGTRGKKIYVRLLLSIDRRETTEAAMETVKLALEM 185 (238)
Q Consensus 150 ~~~~~~~~i~vrlI~~~~R~~~~e~~~~~~~la~~~ 185 (238)
..+++ +|+++.-+.+++.=..+++...+.
T Consensus 86 ---~S~yP----vIlslE~Hcs~~qQ~~ma~~l~~~ 114 (229)
T cd08627 86 ---TSEYP----IILSIEDHCSIVQQRNMAQHFKKV 114 (229)
T ss_pred ---CCCCC----EEEEEcccCCHHHHHHHHHHHHHH
Confidence 13445 889999999987755555555543
No 137
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=34.85 E-value=3.5e+02 Score=24.77 Aligned_cols=65 Identities=20% Similarity=0.217 Sum_probs=37.3
Q ss_pred EEEEEEEEeC--CCCHHHHHHHHHHHHhcCCCcEEEEec---cCCCCCCCcccHHHHHH-HHHHcCCCeeEe
Q 026472 159 YVRLLLSIDR--RETTEAAMETVKLALEMRDLGVVGIDL---SGNPTKGEWTTFLPALK-FAREQGLQITLH 224 (238)
Q Consensus 159 ~vrlI~~~~R--~~~~e~~~~~~~la~~~~~~~vvG~dL---~G~E~~~~~~~f~~~f~-~ar~~gl~~t~H 224 (238)
.+.+=+.+++ +.++++|.+.++++..... .|-=|-+ .|.+-..|..+-+..|. ..++.|+.+|+-
T Consensus 250 ri~~Ey~Li~gvND~~e~a~~L~~ll~~~~~-~VNLIp~Np~~~~~~~~~s~~~~~~F~~~L~~~gi~~tvR 320 (345)
T PRK14466 250 RVSFEYIVFKGLNDSLKHAKELVKLLRGIDC-RVNLIRFHAIPGVDLEGSDMARMEAFRDYLTSHGVFTTIR 320 (345)
T ss_pred EEEEEEEEeCCCCCCHHHHHHHHHHHcCCCc-eEEEEecCCCCCCCCcCCCHHHHHHHHHHHHHCCCcEEEe
Confidence 3445555555 5678899999998875532 2222222 23222334444554444 477889988874
No 138
>cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon. PTE exists as a homodimer with one active site per monomer. The active site is located next to a binuclear metal center, at the C-terminal end of a TIM alpha- beta barrel motif. The native enzyme contains two zinc ions at the active site however these can be replaced with other metals such as cobalt, cadmium, nickel or manganese and the enzyme remains active.
Probab=34.11 E-value=44 Score=29.04 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=17.1
Q ss_pred cHHHHHHHHHHcCCCeeEecCCC
Q 026472 206 TFLPALKFAREQGLQITLHCGEV 228 (238)
Q Consensus 206 ~f~~~f~~ar~~gl~~t~HAGE~ 228 (238)
.|....+.|++.|+|+++|+++.
T Consensus 137 ~f~~~~~lA~~~~~Pv~iH~~~~ 159 (293)
T cd00530 137 VLRAAARAQKETGVPISTHTQAG 159 (293)
T ss_pred HHHHHHHHHHHHCCeEEEcCCCC
Confidence 45566677778888888888774
No 139
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=33.97 E-value=3.4e+02 Score=24.25 Aligned_cols=71 Identities=17% Similarity=0.129 Sum_probs=44.0
Q ss_pred CCCcEEEEEEEEeCCCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCC--C------CcccHHHHHHHHHHcCC-------
Q 026472 155 GKKIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTK--G------EWTTFLPALKFAREQGL------- 219 (238)
Q Consensus 155 ~~~i~vrlI~~~~R~~~~e~~~~~~~la~~~~~~~vvG~dL~G~E~~--~------~~~~f~~~f~~ar~~gl------- 219 (238)
+..+...+|+.+ +.+.++..+.++...+...+ ++.|+=-=.++. . +|.+|...=..|.+.|+
T Consensus 206 gi~~~TgiIVGl--GETeee~~etl~~Lrelg~d-~v~igqYl~p~~~~~~v~~~~~p~~f~~~~~~a~~~gf~~v~~~p 282 (302)
T TIGR00510 206 NLPTKSGIMVGL--GETNEEIKQTLKDLRDHGVT-MVTLGQYLRPSRRHLPVKRYVSPEEFDYYRSVALEMGFLHAACGP 282 (302)
T ss_pred CCeecceEEEEC--CCCHHHHHHHHHHHHhcCCC-EEEeecccCCCCCCCccccCCCHHHHHHHHHHHHHcCChheEecc
Confidence 456677888888 88888989999888877554 444443323322 1 33445444445556664
Q ss_pred --CeeEecCCC
Q 026472 220 --QITLHCGEV 228 (238)
Q Consensus 220 --~~t~HAGE~ 228 (238)
+-..||+|.
T Consensus 283 ~vrssy~a~~~ 293 (302)
T TIGR00510 283 FVRSSYHADSL 293 (302)
T ss_pred cchhhhhHHHH
Confidence 445677764
No 140
>PRK12394 putative metallo-dependent hydrolase; Provisional
Probab=33.62 E-value=1.1e+02 Score=27.90 Aligned_cols=27 Identities=11% Similarity=0.192 Sum_probs=23.2
Q ss_pred CcccHHHHHHHHHHcCCCeeEecCCCC
Q 026472 203 EWTTFLPALKFAREQGLQITLHCGEVH 229 (238)
Q Consensus 203 ~~~~f~~~f~~ar~~gl~~t~HAGE~~ 229 (238)
....+....+.|++.|+++.+|++|..
T Consensus 171 ~~~~l~~~~~~A~~~g~~v~iH~~e~~ 197 (379)
T PRK12394 171 GLKPLTETLRIANDLRCPVAVHSTHPV 197 (379)
T ss_pred chHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 356788889999999999999999865
No 141
>TIGR03178 allantoinase allantoinase. This enzyme carries out the first step in the degradation of allantoin, a ring-opening hydrolysis. The seed members of this model are all in the vicinity of other genes involved in the processes of xanthine/urate/allantoin catabolism. Although not included in the seed, many eukaryotic homologs of this family are included above the trusted cutoff. Below the noise cutoff are related hydantoinases.
Probab=33.38 E-value=3.2e+02 Score=25.38 Aligned_cols=33 Identities=24% Similarity=0.386 Sum_probs=20.8
Q ss_pred cCCh-hhhccccC--CCCCHHHHHHHHHHhccCCCC
Q 026472 6 SMPK-VELHAHLN--GSIRDSTLLELARVLGEKGVI 38 (238)
Q Consensus 6 ~lPK-~eLH~HL~--Gsi~~~tl~~la~~~~~~~~~ 38 (238)
-||- +|+|+|+. |....+++...++.....|+.
T Consensus 49 v~PG~ID~H~H~~~~~~~~~~~~~~~~~~~~~gGvT 84 (443)
T TIGR03178 49 VFPGVVDTHVHINEPGRTEWEGFETGTRAAAAGGIT 84 (443)
T ss_pred EeccEeccccccCCCCccccchHHHHHHHHHcCCeE
Confidence 4788 99999996 344456666554443335553
No 142
>cd01306 PhnM PhnM is believed to be a subunit of the membrane associated C-P lyase complex. C-P lyase is thought to catalyze the direct cleavage of inactivated C-P bonds to yield inorganic phosphate and the corresponding hydrocarbons. It is responsible for cleavage of alkylphosphonates, which are utilized as sole phosphorus sources by many bacteria.
Probab=33.35 E-value=1.2e+02 Score=27.41 Aligned_cols=26 Identities=15% Similarity=0.170 Sum_probs=22.1
Q ss_pred cccHHHHHHHHHHcCCCeeEecCCCC
Q 026472 204 WTTFLPALKFAREQGLQITLHCGEVH 229 (238)
Q Consensus 204 ~~~f~~~f~~ar~~gl~~t~HAGE~~ 229 (238)
......+++.|++.|+++..|+.++.
T Consensus 162 ~~~~~~iv~~A~~~gl~vasH~d~~~ 187 (325)
T cd01306 162 PANRSELAALARARGIPLASHDDDTP 187 (325)
T ss_pred HHHHHHHHHHHHHCCCcEEEecCCCh
Confidence 36677889999999999999998863
No 143
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=33.26 E-value=2.8e+02 Score=22.92 Aligned_cols=134 Identities=19% Similarity=0.152 Sum_probs=81.3
Q ss_pred HHHHHHhHH-HHhhcCChHHHHHHHHHHHHHHHhcCCeEEEEeecCCCCccCCCCHHHHHHHHHHHHHhhhhcccccccc
Q 026472 55 HEVFKLFDL-IHVLTTDHATVTRITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASR 133 (238)
Q Consensus 55 ~~f~~~f~~-~~~l~~~~~~~~~~~~~~~~~~a~dgV~Y~Elr~~P~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~ 133 (238)
++|.+.... ...+-...+.+..++..+++.+...|-+-+ -..|=|..+...-+.+-+.+++.+
T Consensus 7 ~~~~es~~~~~~~~~~l~~~I~~aa~~i~~~l~~G~Kvl~---------cGNGgSaadAqHfaael~gRf~~e------- 70 (176)
T COG0279 7 SEFTESIQTQIAALEALIEAIERAAQLLVQSLLNGNKVLA---------CGNGGSAADAQHFAAELTGRFEKE------- 70 (176)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEE---------ECCCcchhhHHHHHHHHhhHHHhc-------
Confidence 445555543 222334466788888888888888887644 122335555444455555555431
Q ss_pred ccccccccccccccccccCCCCCCcEEE-------EEEEEeCCCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCCCccc
Q 026472 134 SIDVRRPVNTKNMNDACNGTRGKKIYVR-------LLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTT 206 (238)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~i~vr-------lI~~~~R~~~~e~~~~~~~la~~~~~~~vvG~dL~G~E~~~~~~~ 206 (238)
+.++.+= .+-++--+.+.+....---.|....++.++||.-+|+. ..
T Consensus 71 ---------------------R~~lpaIaLt~dsS~lTai~NDy~yd~vFsRqveA~g~~GDvLigISTSGNS-----~n 124 (176)
T COG0279 71 ---------------------RPSLPAIALSTDSSVLTAIANDYGYDEVFSRQVEALGQPGDVLIGISTSGNS-----KN 124 (176)
T ss_pred ---------------------CCCCCeeEeecccHHHhhhhccccHHHHHHHHHHhcCCCCCEEEEEeCCCCC-----HH
Confidence 2222211 11122334455554433333444567889999999987 45
Q ss_pred HHHHHHHHHHcCCCeeEecCCCCC
Q 026472 207 FLPALKFAREQGLQITLHCGEVHM 230 (238)
Q Consensus 207 f~~~f~~ar~~gl~~t~HAGE~~~ 230 (238)
-+.+++.|++.|+.+..=.|..+|
T Consensus 125 Vl~Ai~~Ak~~gm~vI~ltG~~GG 148 (176)
T COG0279 125 VLKAIEAAKEKGMTVIALTGKDGG 148 (176)
T ss_pred HHHHHHHHHHcCCEEEEEecCCCc
Confidence 788999999999999999999887
No 144
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=33.21 E-value=1.8e+02 Score=25.97 Aligned_cols=128 Identities=16% Similarity=0.216 Sum_probs=67.8
Q ss_pred CCCHHHHHHHHHHhccCCCCC--chhhhHHHhcCCCCHHHHHHHhHH---H-HhhcCChHHHHHHHHHHHHHHHhcCCeE
Q 026472 19 SIRDSTLLELARVLGEKGVIV--FSDVEHVIMKSDRSLHEVFKLFDL---I-HVLTTDHATVTRITQEVVEDFASENIVY 92 (238)
Q Consensus 19 si~~~tl~~la~~~~~~~~~~--~~~~~~~~~~~~~~l~~f~~~f~~---~-~~l~~~~~~~~~~~~~~~~~~a~dgV~Y 92 (238)
.++.+.+..+++...+.|+.. +.--|-+ -..++.++++.... + ...+.|...+ +.+.++++.+.|+.+
T Consensus 44 ~ls~eei~~li~~~~~~Gv~~I~~tGGEPl---lr~dl~~li~~i~~~~~l~~i~itTNG~l---l~~~~~~L~~aGl~~ 117 (329)
T PRK13361 44 VLSLEELAWLAQAFTELGVRKIRLTGGEPL---VRRGCDQLVARLGKLPGLEELSLTTNGSR---LARFAAELADAGLKR 117 (329)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEECcCCC---ccccHHHHHHHHHhCCCCceEEEEeChhH---HHHHHHHHHHcCCCe
Confidence 477888888776543344421 1100001 12345555544321 1 1122333222 235778888889988
Q ss_pred EEEeec---CCCCcc--CCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCCCc-EEEEEEEE
Q 026472 93 LELRTT---PKRNES--IGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKI-YVRLLLSI 166 (238)
Q Consensus 93 ~Elr~~---P~~~~~--~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~vrlI~~~ 166 (238)
+=+.+. |..+.. ++-+ ++.+.++++.+. +.|+ .+++-..+
T Consensus 118 v~ISlDs~~~e~~~~i~~~g~----~~~vl~~i~~~~------------------------------~~Gi~~v~in~v~ 163 (329)
T PRK13361 118 LNISLDTLRPELFAALTRNGR----LERVIAGIDAAK------------------------------AAGFERIKLNAVI 163 (329)
T ss_pred EEEEeccCCHHHhhhhcCCCC----HHHHHHHHHHHH------------------------------HcCCCceEEEEEE
Confidence 777654 222211 1223 344555555442 1244 45555566
Q ss_pred eCCCCHHHHHHHHHHHHhcC
Q 026472 167 DRRETTEAAMETVKLALEMR 186 (238)
Q Consensus 167 ~R~~~~e~~~~~~~la~~~~ 186 (238)
++..+.++..+.++++.+..
T Consensus 164 ~~g~N~~ei~~~~~~~~~~g 183 (329)
T PRK13361 164 LRGQNDDEVLDLVEFCRERG 183 (329)
T ss_pred ECCCCHHHHHHHHHHHHhcC
Confidence 78888889999999998764
No 145
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=33.03 E-value=1.7e+02 Score=25.90 Aligned_cols=69 Identities=12% Similarity=0.127 Sum_probs=46.3
Q ss_pred CCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCCCcccHHHHHHH-HHHcC-CCeeEecCCCCChhHHHhhC
Q 026472 170 ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKF-AREQG-LQITLHCGEVHMSFECLLLL 238 (238)
Q Consensus 170 ~~~e~~~~~~~la~~~~~~~vvG~dL~G~E~~~~~~~f~~~f~~-ar~~g-l~~t~HAGE~~~~~~i~~~~ 238 (238)
.+.+.+..+++-|.+.+.+.+..+.-..-...+....+.+..+. |++.+ +|+.+|--.....+.|+.+|
T Consensus 24 ~n~e~~~avi~aAe~~~~PvIl~~~~~~~~~~~~~~~~~~~~~~~a~~~~~vpv~lhlDH~~~~e~i~~ai 94 (282)
T TIGR01859 24 NNLEWTQAILEAAEEENSPVIIQVSEGAIKYMGGYKMAVAMVKTLIERMSIVPVALHLDHGSSYESCIKAI 94 (282)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEcCcchhhccCcHHHHHHHHHHHHHHCCCCeEEEECCCCCCHHHHHHHH
Confidence 46788999999998888776666533322211224556666554 55668 99999987666777777653
No 146
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=32.94 E-value=2.9e+02 Score=22.97 Aligned_cols=60 Identities=10% Similarity=0.120 Sum_probs=32.9
Q ss_pred CcEEEEEEEEeCCCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCCCcccHHHHHHHHHHcCCCeeEe
Q 026472 157 KIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLH 224 (238)
Q Consensus 157 ~i~vrlI~~~~R~~~~e~~~~~~~la~~~~~~~vvG~dL~G~E~~~~~~~f~~~f~~ar~~gl~~t~H 224 (238)
|+.+.+++.-.. .+++...+.++.+...+-++|+..... .....+.++.+++.|+|+++-
T Consensus 32 g~~~~l~i~~~~-~~~~~~~~~~~~~~~~~vdgiIi~~~~-------~~~~~~~l~~~~~~~iPvv~~ 91 (272)
T cd06300 32 GLISEFIVTSAD-GDVAQQIADIRNLIAQGVDAIIINPAS-------PTALNPVIEEACEAGIPVVSF 91 (272)
T ss_pred CCeeEEEEecCC-CCHHHHHHHHHHHHHcCCCEEEEeCCC-------hhhhHHHHHHHHHCCCeEEEE
Confidence 555555554333 345555666666666555555554321 112334667777778886653
No 147
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=32.76 E-value=1e+02 Score=26.80 Aligned_cols=44 Identities=23% Similarity=0.240 Sum_probs=33.1
Q ss_pred cEEEEeccCCCCCCCcccHHHHHHHHHHcCCCeeEecCCCCChh
Q 026472 189 GVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEVHMSF 232 (238)
Q Consensus 189 ~vvG~dL~G~E~~~~~~~f~~~f~~ar~~gl~~t~HAGE~~~~~ 232 (238)
.+-||-++|+|.--.+....++|+.||+.||+++++--=...++
T Consensus 83 ~~~gvt~SGGEP~~q~e~~~~~~~~ake~Gl~~~l~TnG~~~~~ 126 (260)
T COG1180 83 SGGGVTFSGGEPTLQAEFALDLLRAAKERGLHVALDTNGFLPPE 126 (260)
T ss_pred CCCEEEEECCcchhhHHHHHHHHHHHHHCCCcEEEEcCCCCCHH
Confidence 57788899999755556667889999999999999854333333
No 148
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=32.72 E-value=1.6e+02 Score=26.23 Aligned_cols=68 Identities=12% Similarity=0.016 Sum_probs=47.8
Q ss_pred CCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCCCcccHHHHHH-HHHHcCCCeeEecCCCCChhHHHhhC
Q 026472 170 ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALK-FAREQGLQITLHCGEVHMSFECLLLL 238 (238)
Q Consensus 170 ~~~e~~~~~~~la~~~~~~~vvG~dL~G~E~~~~~~~f~~~f~-~ar~~gl~~t~HAGE~~~~~~i~~~~ 238 (238)
.+.+.++.+++-|.+.+.+.|+.+.-..-.. .+...+.+..+ .|++.++|+.+|---..+.+.|+.++
T Consensus 24 ~n~e~~~avi~AAee~~sPvIlq~s~~~~~~-~~~~~~~~~~~~~a~~~~VPValHLDHg~~~e~i~~ai 92 (282)
T TIGR01858 24 HNLETIQAVVETAAEMRSPVILAGTPGTFKH-AGTEYIVALCSAASTTYNMPLALHLDHHESLDDIRQKV 92 (282)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEeCccHHhh-CCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHH
Confidence 4678899999999888887777664322211 23344555555 45667999999998888888887753
No 149
>PRK06801 hypothetical protein; Provisional
Probab=32.41 E-value=1.7e+02 Score=26.00 Aligned_cols=68 Identities=12% Similarity=-0.027 Sum_probs=47.8
Q ss_pred CCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCCCcccHHHHHH-HHHHcCCCeeEecCCCCChhHHHhhC
Q 026472 170 ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALK-FAREQGLQITLHCGEVHMSFECLLLL 238 (238)
Q Consensus 170 ~~~e~~~~~~~la~~~~~~~vvG~dL~G~E~~~~~~~f~~~f~-~ar~~gl~~t~HAGE~~~~~~i~~~~ 238 (238)
.+.+.++.+++-|.+.+.+.|+.+.-.... -.+...+.+... .|++..+|+.+|--.....+.|.++|
T Consensus 26 ~n~e~~~avi~AAe~~~~PvIl~~~~~~~~-~~~~~~~~~~~~~~a~~~~vpV~lHlDH~~~~e~i~~Ai 94 (286)
T PRK06801 26 LDSHFLRALFAAAKQERSPFIINIAEVHFK-YISLESLVEAVKFEAARHDIPVVLNLDHGLHFEAVVRAL 94 (286)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEeCcchhh-cCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHH
Confidence 478899999999988887777766443221 123355666554 45567999999998877788877654
No 150
>CHL00040 rbcL ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit
Probab=31.84 E-value=4.7e+02 Score=25.13 Aligned_cols=105 Identities=14% Similarity=0.070 Sum_probs=61.2
Q ss_pred HHHHHHHHHhcCCeEE---EEeecCCCCccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCC
Q 026472 78 TQEVVEDFASENIVYL---ELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTR 154 (238)
Q Consensus 78 ~~~~~~~~a~dgV~Y~---Elr~~P~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (238)
+.+++.+++.-||-++ |.-.++.. .++++.+.++.++++++.+
T Consensus 185 ~A~~~y~~~~GGvD~IKDDE~l~dq~~-----~p~~eRv~~~~~a~~~a~~----------------------------- 230 (475)
T CHL00040 185 YGRAVYECLRGGLDFTKDDENVNSQPF-----MRWRDRFLFCAEAIYKAQA----------------------------- 230 (475)
T ss_pred HHHHHHHHHcCCCcccccCccCCCCCC-----CCHHHHHHHHHHHHHHHHH-----------------------------
Confidence 3344555667777765 44444433 3788999999999998753
Q ss_pred CCCcEEEEEEEEeCC-CCHHHHHHHHHHHHhcCCC-cEEEEeccCCCCCCCcccHHHHHHHHHHcCCCeeEe
Q 026472 155 GKKIYVRLLLSIDRR-ETTEAAMETVKLALEMRDL-GVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLH 224 (238)
Q Consensus 155 ~~~i~vrlI~~~~R~-~~~e~~~~~~~la~~~~~~-~vvG~dL~G~E~~~~~~~f~~~f~~ar~~gl~~t~H 224 (238)
++|- +-++.++=. -++++..+..+.+.+.-.+ ..+-+.++|-.. +..+=+.+++.++++-.|
T Consensus 231 eTG~--~~~y~~NiTa~~~~em~~ra~~a~e~G~~~~mv~~~~~G~~a------l~~l~~~~~~~~l~IhaH 294 (475)
T CHL00040 231 ETGE--IKGHYLNATAGTCEEMYKRAVFARELGVPIVMHDYLTGGFTA------NTSLAHYCRDNGLLLHIH 294 (475)
T ss_pred hhCC--cceeeeccCCCCHHHHHHHHHHHHHcCCceEEEeccccccch------HHHHHHHhhhcCceEEec
Confidence 3342 234455444 4688888888888875432 133333344321 222222234567777777
No 151
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=31.36 E-value=3.9e+02 Score=23.99 Aligned_cols=63 Identities=5% Similarity=-0.112 Sum_probs=42.6
Q ss_pred CCCcEEEEEEEEeCC--CCHHHHHHHHHHHHhcC--CCcEEEEeccCCCCCC--CcccHHHHHHHHHHc
Q 026472 155 GKKIYVRLLLSIDRR--ETTEAAMETVKLALEMR--DLGVVGIDLSGNPTKG--EWTTFLPALKFAREQ 217 (238)
Q Consensus 155 ~~~i~vrlI~~~~R~--~~~e~~~~~~~la~~~~--~~~vvG~dL~G~E~~~--~~~~f~~~f~~ar~~ 217 (238)
+.|+.+..-..++|+ .+.+...++.+.+.+.. +-.+--++.+|.-... ++.+...+++.+++.
T Consensus 231 ~~Gi~v~~qtvllkgiNDn~~~l~~L~~~l~~~gv~pyyl~~~~p~gg~~~f~v~~~~~~~i~~~l~~~ 299 (321)
T TIGR03821 231 NAGITLLNQSVLLRGVNDNADTLAALSERLFDAGVLPYYLHLLDKVQGAAHFDVDDERARALMAELLAR 299 (321)
T ss_pred HcCCEEEecceeeCCCCCCHHHHHHHHHHHHHcCCeeCcccccCCCCCcccccCCHHHHHHHHHHHHHh
Confidence 358888888888886 46777788888777653 3334455556643333 567888899988874
No 152
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=31.01 E-value=99 Score=26.99 Aligned_cols=56 Identities=23% Similarity=0.264 Sum_probs=35.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCCCcccH-HHHHHHHHHcCCCeeEe
Q 026472 168 RRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTF-LPALKFAREQGLQITLH 224 (238)
Q Consensus 168 R~~~~e~~~~~~~la~~~~~~~vvG~dL~G~E~~~~~~~f-~~~f~~ar~~gl~~t~H 224 (238)
+..+.+...+.++....+.....-||-+.|.|.--. .+| .++++.+++.|+++++-
T Consensus 104 ~~~t~eel~~~i~~~~~~~~~~~~~V~~sGGEPll~-~~~l~~l~~~~k~~g~~~~i~ 160 (295)
T TIGR02494 104 EEMTVEEVMRVVLRDSIFYRNSGGGVTLSGGEPLLQ-PEFALALLQACHERGIHTAVE 160 (295)
T ss_pred cCCcHHHHHHHHHHHHHhcccCCCcEEeeCcchhch-HHHHHHHHHHHHHcCCcEeee
Confidence 345566666666554433322234677888776433 345 57889999999887763
No 153
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=30.46 E-value=3.3e+02 Score=24.35 Aligned_cols=64 Identities=14% Similarity=0.085 Sum_probs=36.6
Q ss_pred CCCcEEEEEEEEeCCCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCCCcccHHHHHHHHHHcCCCeeEecCC
Q 026472 155 GKKIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGE 227 (238)
Q Consensus 155 ~~~i~vrlI~~~~R~~~~e~~~~~~~la~~~~~~~vvG~dL~G~E~~~~~~~f~~~f~~ar~~gl~~t~HAGE 227 (238)
+.|+.+ ++...-..+.+.-.+.++.++..+.+ ||=++.. .+....+.+++|++.|+|++.+-..
T Consensus 51 ~~G~~v--~~~~~~~~d~~~q~~~i~~li~~~vd---gIiv~~~----d~~al~~~l~~a~~~gIpVV~~d~~ 114 (336)
T PRK15408 51 ELGVDV--TYDGPTEPSVSGQVQLINNFVNQGYN---AIIVSAV----SPDGLCPALKRAMQRGVKVLTWDSD 114 (336)
T ss_pred HhCCEE--EEECCCCCCHHHHHHHHHHHHHcCCC---EEEEecC----CHHHHHHHHHHHHHCCCeEEEeCCC
Confidence 356554 34222223344334566666665444 3333322 2244668899999999999888654
No 154
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=30.44 E-value=1.5e+02 Score=27.03 Aligned_cols=52 Identities=23% Similarity=0.289 Sum_probs=37.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCCCcccHHHHHHHHHHcCCCeeE
Q 026472 168 RRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITL 223 (238)
Q Consensus 168 R~~~~e~~~~~~~la~~~~~~~vvG~dL~G~E~~~~~~~f~~~f~~ar~~gl~~t~ 223 (238)
+..+.+...++++.+.+. ++..|.+.|.|.--. .++.++++.+++.|+.+++
T Consensus 44 ~~~~~e~~~~ii~~~~~~---g~~~v~~~GGEPll~-~~~~~il~~~~~~g~~~~i 95 (378)
T PRK05301 44 AELSTEEWIRVLREARAL---GALQLHFSGGEPLLR-KDLEELVAHARELGLYTNL 95 (378)
T ss_pred CCCCHHHHHHHHHHHHHc---CCcEEEEECCccCCc-hhHHHHHHHHHHcCCcEEE
Confidence 346677777777776543 467888888886433 4688999999988876544
No 155
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=29.76 E-value=4.3e+02 Score=24.04 Aligned_cols=158 Identities=13% Similarity=0.108 Sum_probs=86.5
Q ss_pred CCCCCHHHHHHHHHHhccCCCCC-----chh----hhH-HHhcCCCCHHHHHHHhHHHHhhcCChHHHHHHHHHHHHHHH
Q 026472 17 NGSIRDSTLLELARVLGEKGVIV-----FSD----VEH-VIMKSDRSLHEVFKLFDLIHVLTTDHATVTRITQEVVEDFA 86 (238)
Q Consensus 17 ~Gsi~~~tl~~la~~~~~~~~~~-----~~~----~~~-~~~~~~~~l~~f~~~f~~~~~l~~~~~~~~~~~~~~~~~~a 86 (238)
.|....+..+++|+|..+.|..+ |++ +.. ..++.+.+++ +-++ ..+++.+++++++.+.
T Consensus 52 ~g~~~~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~~P~aW~~~~-~~~l----------~~~v~~yT~~vl~~l~ 120 (332)
T PF07745_consen 52 GGYNDLEDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQNKPAAWANLS-FDQL----------AKAVYDYTKDVLQALK 120 (332)
T ss_dssp TTTTSHHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B--TTCTSSS-HHHH----------HHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCCCCccCCCCC-HHHH----------HHHHHHHHHHHHHHHH
Confidence 48889999999999876667543 332 211 1222233221 1111 3458999999999999
Q ss_pred hcCCe--EEEEe--ecCCCC--ccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCCCcEE
Q 026472 87 SENIV--YLELR--TTPKRN--ESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYV 160 (238)
Q Consensus 87 ~dgV~--Y~Elr--~~P~~~--~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 160 (238)
+.||. ++.+= +++.+. ....-.++.+...+..|++..+. .+-.+
T Consensus 121 ~~G~~pd~VQVGNEin~Gmlwp~g~~~~~~~~a~ll~ag~~AVr~------------------------------~~p~~ 170 (332)
T PF07745_consen 121 AAGVTPDMVQVGNEINNGMLWPDGKPSNWDNLAKLLNAGIKAVRE------------------------------VDPNI 170 (332)
T ss_dssp HTT--ESEEEESSSGGGESTBTTTCTT-HHHHHHHHHHHHHHHHT------------------------------HSSTS
T ss_pred HCCCCccEEEeCccccccccCcCCCccCHHHHHHHHHHHHHHHHh------------------------------cCCCC
Confidence 99985 22221 111111 11223455566666666655432 12346
Q ss_pred EEEEEEeCCCCHHHHHHHHHHHHhcCC-CcEEEEeccCCCCCCCcccHHHHHHHHHH
Q 026472 161 RLLLSIDRRETTEAAMETVKLALEMRD-LGVVGIDLSGNPTKGEWTTFLPALKFARE 216 (238)
Q Consensus 161 rlI~~~~R~~~~e~~~~~~~la~~~~~-~~vvG~dL~G~E~~~~~~~f~~~f~~ar~ 216 (238)
++++.+....+.+.....++......- -.|+|+..--.=. +....+...++..++
T Consensus 171 kV~lH~~~~~~~~~~~~~f~~l~~~g~d~DviGlSyYP~w~-~~l~~l~~~l~~l~~ 226 (332)
T PF07745_consen 171 KVMLHLANGGDNDLYRWFFDNLKAAGVDFDVIGLSYYPFWH-GTLEDLKNNLNDLAS 226 (332)
T ss_dssp EEEEEES-TTSHHHHHHHHHHHHHTTGG-SEEEEEE-STTS-T-HHHHHHHHHHHHH
T ss_pred cEEEEECCCCchHHHHHHHHHHHhcCCCcceEEEecCCCCc-chHHHHHHHHHHHHH
Confidence 788999888887777777777766432 2377776653222 255667777766543
No 156
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=29.68 E-value=1.9e+02 Score=25.83 Aligned_cols=68 Identities=9% Similarity=0.047 Sum_probs=46.8
Q ss_pred CCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCCCcccHHHHHH-HHHHcCCCeeEecCCCCChhHHHhhC
Q 026472 170 ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALK-FAREQGLQITLHCGEVHMSFECLLLL 238 (238)
Q Consensus 170 ~~~e~~~~~~~la~~~~~~~vvG~dL~G~E~~~~~~~f~~~f~-~ar~~gl~~t~HAGE~~~~~~i~~~~ 238 (238)
.+.+.++.+++-|.+.+.+.|..+.-..-. ..+...+.+..+ .|++.++|+.+|---..+.+.|+.+|
T Consensus 26 ~n~e~~~avi~AAee~~sPvIlq~s~~~~~-~~~~~~~~~~~~~~a~~~~VPValHLDHg~~~e~i~~ai 94 (286)
T PRK12738 26 HNAETIQAILEVCSEMRSPVILAGTPGTFK-HIALEEIYALCSAYSTTYNMPLALHLDHHESLDDIRRKV 94 (286)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEcCcchhh-hCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHH
Confidence 468889999999988887777765322211 123344455444 46667999999998888888887764
No 157
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=29.65 E-value=4.6e+02 Score=24.36 Aligned_cols=50 Identities=12% Similarity=0.155 Sum_probs=28.7
Q ss_pred CChHHHHHHHHHHHHHHHhcCCeEEEEeec-CCCCccCC--CC---HHHHHHHHHHHHHh
Q 026472 69 TDHATVTRITQEVVEDFASENIVYLELRTT-PKRNESIG--MS---KRSYMDAVVEGLRA 122 (238)
Q Consensus 69 ~~~~~~~~~~~~~~~~~a~dgV~Y~Elr~~-P~~~~~~~--~~---~~~~l~~v~~~~~~ 122 (238)
.+++++.+++.. +.+-|+.|+||=++ |.....++ .. ..+.+..+.+.+++
T Consensus 124 ~s~~~~~~~a~~----~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~Vk~ 179 (385)
T PLN02495 124 YNKDAWEEIIER----VEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWINA 179 (385)
T ss_pred CCHHHHHHHHHH----HHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHHHHH
Confidence 366666666654 33458999999877 76432222 11 13455555555544
No 158
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=29.57 E-value=2.3e+02 Score=25.11 Aligned_cols=67 Identities=15% Similarity=0.078 Sum_probs=46.2
Q ss_pred CCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCC-CcccHHHHHH-HHHHcCCCeeEecCCCCChhHHHhhC
Q 026472 170 ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKG-EWTTFLPALK-FAREQGLQITLHCGEVHMSFECLLLL 238 (238)
Q Consensus 170 ~~~e~~~~~~~la~~~~~~~vvG~dL~G~E~~~-~~~~f~~~f~-~ar~~gl~~t~HAGE~~~~~~i~~~~ 238 (238)
.+.+.+..+++-|.+.+.+.+..+.- .+..+ +...+.+... .|++..+|+.+|---..+.+.|+.+|
T Consensus 26 ~n~e~~~avi~aAe~~~~Pvii~~~~--~~~~~~~~~~~~~~~~~~a~~~~vpv~lHlDH~~~~e~i~~Al 94 (281)
T PRK06806 26 ANMEMVMGAIKAAEELNSPIILQIAE--VRLNHSPLHLIGPLMVAAAKQAKVPVAVHFDHGMTFEKIKEAL 94 (281)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEcCc--chhccCChHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHH
Confidence 46888999999998888776665543 22222 3334444443 56677999999998877888777654
No 159
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=29.36 E-value=88 Score=26.50 Aligned_cols=57 Identities=19% Similarity=0.225 Sum_probs=32.7
Q ss_pred CCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCCCcccH-HHHHHHHHHcCCCeeEec-CC
Q 026472 170 ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTF-LPALKFAREQGLQITLHC-GE 227 (238)
Q Consensus 170 ~~~e~~~~~~~la~~~~~~~vvG~dL~G~E~~~~~~~f-~~~f~~ar~~gl~~t~HA-GE 227 (238)
.++++..+.+.....+.....-||.++|.|.--. .+| .++++.+++.|+++++.- |-
T Consensus 51 lt~eei~~~i~~~~~~~~~~~~~V~~sGGEPll~-~~~~~~l~~~~k~~g~~i~l~TNG~ 109 (246)
T PRK11145 51 VTVEELMKEVVTYRHFMNASGGGVTASGGEAILQ-AEFVRDWFRACKKEGIHTCLDTNGF 109 (246)
T ss_pred cCHHHHHHHHHHhHHHHhcCCCeEEEeCccHhcC-HHHHHHHHHHHHHcCCCEEEECCCC
Confidence 4555554444333222111123666888886433 344 478888999999988763 53
No 160
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=29.06 E-value=3.6e+02 Score=22.87 Aligned_cols=62 Identities=8% Similarity=-0.021 Sum_probs=35.6
Q ss_pred CCcEEEEEEEEeCCCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCCCcccHHHHHHHHHHcCCCeeEecCC
Q 026472 156 KKIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGE 227 (238)
Q Consensus 156 ~~i~vrlI~~~~R~~~~e~~~~~~~la~~~~~~~vvG~dL~G~E~~~~~~~f~~~f~~ar~~gl~~t~HAGE 227 (238)
.|+.+.+ +.. ..+++...+.++.++..+.++|+ +.+.. .....+.++.+++.|+|++..-..
T Consensus 28 ~g~~~~~--~~~-~~~~~~~~~~i~~~~~~~vdgii---i~~~~----~~~~~~~l~~l~~~~ipvV~~~~~ 89 (288)
T cd01538 28 LGAEVIV--QNA-NGDPAKQISQIENMIAKGVDVLV---IAPVD----GEALASAVEKAADAGIPVIAYDRL 89 (288)
T ss_pred cCCEEEE--ECC-CCCHHHHHHHHHHHHHcCCCEEE---EecCC----hhhHHHHHHHHHHCCCCEEEECCC
Confidence 4666443 222 23566666777777766555544 33211 122456778888889998776443
No 161
>PF10901 DUF2690: Protein of unknown function (DUF2690); InterPro: IPR021224 This bacterial family of proteins has no known function.
Probab=28.69 E-value=40 Score=25.32 Aligned_cols=15 Identities=27% Similarity=0.189 Sum_probs=12.2
Q ss_pred cCCeEEEEeecCCCC
Q 026472 88 ENIVYLELRTTPKRN 102 (238)
Q Consensus 88 dgV~Y~Elr~~P~~~ 102 (238)
-++.++|||+||.-.
T Consensus 28 ~~~~~VELRyS~~C~ 42 (103)
T PF10901_consen 28 VGGGTVELRYSPTCG 42 (103)
T ss_pred ccceEEEEEECChhc
Confidence 467899999999753
No 162
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=28.50 E-value=84 Score=27.16 Aligned_cols=29 Identities=24% Similarity=0.468 Sum_probs=23.3
Q ss_pred hhhcccc-----CCCCCHHHHHHHHHHhccCCCC
Q 026472 10 VELHAHL-----NGSIRDSTLLELARVLGEKGVI 38 (238)
Q Consensus 10 ~eLH~HL-----~Gsi~~~tl~~la~~~~~~~~~ 38 (238)
+|+|+|+ +|+-+.++-+.|++..-+.|+.
T Consensus 2 IDIH~HIlp~iDDGp~s~eesl~ml~~A~~qGvt 35 (254)
T COG4464 2 IDIHSHILPDIDDGPKSLEESLAMLREAVRQGVT 35 (254)
T ss_pred ccccccccCCCCCCCCcHHHHHHHHHHHHHcCce
Confidence 6899997 8999999998887765456764
No 163
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M
Probab=28.46 E-value=4.2e+02 Score=23.49 Aligned_cols=101 Identities=6% Similarity=0.086 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHhcCCeEEEEeecCCCCccC---CCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccC
Q 026472 76 RITQEVVEDFASENIVYLELRTTPKRNESI---GMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNG 152 (238)
Q Consensus 76 ~~~~~~~~~~a~dgV~Y~Elr~~P~~~~~~---~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (238)
..+...++.+.+.|.. +.+.|...... .-+.++-.+.+.+++.+
T Consensus 18 ~~~~~~~~~L~~~G~~---v~~~~~~~~~~~~~ag~~~~Ra~dL~~a~~D------------------------------ 64 (308)
T cd07062 18 HRLERAKKRLENLGFE---VVEGPNALKGDKYLSASPEERAEELMAAFAD------------------------------ 64 (308)
T ss_pred HHHHHHHHHHHhCCCE---EEEecccccccccccCCHHHHHHHHHHHhcC------------------------------
Confidence 3444555566666655 44555543322 23667777777777743
Q ss_pred CCCCCcEEEEEEEEeCCCCHHHHHHHHHH-HHhcCCCcEEEEeccCCCCCCCcccHHHHHHHH-HHcCCCeeEecC
Q 026472 153 TRGKKIYVRLLLSIDRRETTEAAMETVKL-ALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFA-REQGLQITLHCG 226 (238)
Q Consensus 153 ~~~~~i~vrlI~~~~R~~~~e~~~~~~~l-a~~~~~~~vvG~dL~G~E~~~~~~~f~~~f~~a-r~~gl~~t~HAG 226 (238)
. .++.|+|+-=+.+.-.....++. .++..++.++|+ +|...+.... ++.|+ .|+|..
T Consensus 65 ---p--~i~aI~~~rGG~g~~rlL~~lD~~~i~~~PK~fiGy-----------SDiTaL~~al~~~~g~-~t~hGp 123 (308)
T cd07062 65 ---P--SIKAIIPTIGGDDSNELLPYLDYELIKKNPKIFIGY-----------SDITALHLAIYKKTGL-VTYYGP 123 (308)
T ss_pred ---C--CCCEEEECCcccCHhhhhhhcCHHHHhhCCCEEEec-----------cHHHHHHHHHHHhcCC-eEEECc
Confidence 2 36788888666676666666653 234456789998 5555444333 33476 667753
No 164
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=28.31 E-value=1.9e+02 Score=25.77 Aligned_cols=68 Identities=12% Similarity=0.016 Sum_probs=48.4
Q ss_pred CCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCCCcccHHHHHH-HHHHcCCCeeEecCCCCChhHHHhhC
Q 026472 170 ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALK-FAREQGLQITLHCGEVHMSFECLLLL 238 (238)
Q Consensus 170 ~~~e~~~~~~~la~~~~~~~vvG~dL~G~E~~~~~~~f~~~f~-~ar~~gl~~t~HAGE~~~~~~i~~~~ 238 (238)
.+.+.++.+++-|.+.+.+.|+.+.-..-.. .+...+.+... .|++..+|+.+|---..+.+.|..+|
T Consensus 26 ~n~e~~~avi~AAee~~sPvIiq~~~~~~~~-~g~~~~~~~~~~~A~~~~VPV~lHLDHg~~~e~i~~Ai 94 (284)
T PRK09195 26 HNLETMQVVVETAAELHSPVIIAGTPGTFSY-AGTEYLLAIVSAAAKQYHHPLALHLDHHEKFDDIAQKV 94 (284)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEcChhHHhh-CCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHH
Confidence 4678899999999888887777764432211 22345666555 46667999999998888888888764
No 165
>PLN02321 2-isopropylmalate synthase
Probab=28.27 E-value=5.5e+02 Score=25.66 Aligned_cols=92 Identities=10% Similarity=0.031 Sum_probs=62.1
Q ss_pred CCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCCCc-EEEEEE-EEeCCCCHHHHHHHHHHH
Q 026472 105 IGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKI-YVRLLL-SIDRRETTEAAMETVKLA 182 (238)
Q Consensus 105 ~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~vrlI~-~~~R~~~~e~~~~~~~la 182 (238)
-+.+.+++++.+.+.++.+++ .|. .+.+=. ...| .+++.+.++++.+
T Consensus 201 l~~t~ee~l~~~~~~V~~Ak~------------------------------~G~~~v~fs~EDa~r-td~d~l~~~~~~a 249 (632)
T PLN02321 201 LRKTPDEVVEIARDMVKYARS------------------------------LGCEDVEFSPEDAGR-SDPEFLYRILGEV 249 (632)
T ss_pred hCCCHHHHHHHHHHHHHHHHH------------------------------cCCceEEEecccCCC-CCHHHHHHHHHHH
Confidence 478999999999999988753 222 233211 1223 5688898898888
Q ss_pred HhcCCCcEEEEeccCCCCCCCcccHHHHHHHHHHc-----CCCeeEecCCCCC
Q 026472 183 LEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ-----GLQITLHCGEVHM 230 (238)
Q Consensus 183 ~~~~~~~vvG~dL~G~E~~~~~~~f~~~f~~ar~~-----gl~~t~HAGE~~~ 230 (238)
.+...+.|+==|-+| ...|.++...++..++. ++++-+|+--+.|
T Consensus 250 ~~aGa~~I~L~DTvG---~~~P~~v~~li~~l~~~~~~~~~v~i~vH~HND~G 299 (632)
T PLN02321 250 IKAGATTLNIPDTVG---YTLPSEFGQLIADIKANTPGIENVIISTHCQNDLG 299 (632)
T ss_pred HHcCCCEEEeccccc---CCCHHHHHHHHHHHHHhcCCCCCceEEEEeCCCCC
Confidence 876544444445555 34567888888887764 4669999977665
No 166
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=27.98 E-value=1.9e+02 Score=25.84 Aligned_cols=68 Identities=13% Similarity=0.134 Sum_probs=47.0
Q ss_pred CCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCCCcccHHH-HHHHHHHcCCCeeEecCCCCChhHHHhh
Q 026472 170 ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLP-ALKFAREQGLQITLHCGEVHMSFECLLL 237 (238)
Q Consensus 170 ~~~e~~~~~~~la~~~~~~~vvG~dL~G~E~~~~~~~f~~-~f~~ar~~gl~~t~HAGE~~~~~~i~~~ 237 (238)
.+.|+..++++-|.+.+.+.|+.+.-.+..-.+-...... +-..|.+.++|+.+|---..+.+.+..+
T Consensus 26 ~nlE~~~AileaA~e~~sPvIiq~S~g~~~y~gg~~~~~~~v~~~a~~~~vPV~lHlDHg~~~~~~~~a 94 (286)
T COG0191 26 NNLETLQAILEAAEEEKSPVIIQFSEGAAKYAGGADSLAHMVKALAEKYGVPVALHLDHGASFEDCKQA 94 (286)
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEecccHHHHhchHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHH
Confidence 4578999999999999988888886554433321122222 2345667799999998777777777654
No 167
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional
Probab=27.79 E-value=90 Score=31.68 Aligned_cols=61 Identities=16% Similarity=0.158 Sum_probs=38.4
Q ss_pred CCCHHHHHHHhHH--HHhhcCChHHHHHHHH----HHHHHHHhcCCeEEEEeec-CCCCccCCCCHHH
Q 026472 51 DRSLHEVFKLFDL--IHVLTTDHATVTRITQ----EVVEDFASENIVYLELRTT-PKRNESIGMSKRS 111 (238)
Q Consensus 51 ~~~l~~f~~~f~~--~~~l~~~~~~~~~~~~----~~~~~~a~dgV~Y~Elr~~-P~~~~~~~~~~~~ 111 (238)
+.+|.+|.+.... -..+++++..++--+| .-++.+.+.||-|+|+|.. -......|++.++
T Consensus 235 ~~s~~~Y~~~l~~~i~~g~l~~~~e~y~~iRpk~~~~~~~l~~~Gv~yiEvR~~D~~p~~~~GI~~~~ 302 (752)
T PRK02471 235 YNSLEDYVSSLENAVESGQLISEKEFYSPVRLRGAKQDRSLLEKGITYLEFRLFDLNPFEPYGISQET 302 (752)
T ss_pred cCCHHHHHHHHHHHHHcCCccccccceeccCCCCCCchHHHHhcCCCEEEEecccCCCCCccCCCHHH
Confidence 5678888876652 3345555544432222 2466888999999999976 2223456777666
No 168
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=27.77 E-value=3.6e+02 Score=22.45 Aligned_cols=59 Identities=14% Similarity=0.110 Sum_probs=34.8
Q ss_pred cEEEEEEEEeCCCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCCCcccHHHHHHHHHHcCCCeeEe
Q 026472 158 IYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLH 224 (238)
Q Consensus 158 i~vrlI~~~~R~~~~e~~~~~~~la~~~~~~~vvG~dL~G~E~~~~~~~f~~~f~~ar~~gl~~t~H 224 (238)
..+.+++.... .+++.....++..+..+.++++-. +.. +..+.+.++.+++.|+|++.-
T Consensus 33 ~g~~~~~~~~~-~~~~~~~~~~~~l~~~~vDgiii~---~~~----~~~~~~~i~~~~~~gIpvV~~ 91 (274)
T cd06311 33 PDVEFILVTAS-NDTEQQNAQQDLLINRKIDALVIL---PFE----SAPLTQPVAKAKKAGIFVVVV 91 (274)
T ss_pred CCeEEEEEcCC-CCHHHHHHHHHHHHHcCCCEEEEe---CCC----chhhHHHHHHHHHCCCeEEEE
Confidence 34556665443 345555666776766655555433 211 123556788888899998775
No 169
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=27.61 E-value=2.5e+02 Score=24.58 Aligned_cols=42 Identities=26% Similarity=0.310 Sum_probs=29.6
Q ss_pred CcEEEEeccCCCCCCCc--------ccHHHHHHHHHHcCCCeeEecCCCC
Q 026472 188 LGVVGIDLSGNPTKGEW--------TTFLPALKFAREQGLQITLHCGEVH 229 (238)
Q Consensus 188 ~~vvG~dL~G~E~~~~~--------~~f~~~f~~ar~~gl~~t~HAGE~~ 229 (238)
+.||+||=.|=.-.... .-|...++.|++.++|+.+|+-++.
T Consensus 87 ~~vvaIGEiGLDy~~~~~~~~~~Q~~~F~~ql~lA~~~~lPviIH~R~A~ 136 (256)
T COG0084 87 PKVVAIGEIGLDYYWDKEPDKERQEEVFEAQLELAKELNLPVIIHTRDAH 136 (256)
T ss_pred CCeEEEEecccCccccccccHHHHHHHHHHHHHHHHHcCCCEEEEccccH
Confidence 46888887776543221 2355566789999999999997743
No 170
>cd08208 RLP_Photo Ribulose bisphosphate carboxylase like proteins from phototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=27.51 E-value=5.3e+02 Score=24.37 Aligned_cols=72 Identities=10% Similarity=-0.008 Sum_probs=47.3
Q ss_pred HHHHHHHHhcCCeEE---EEeecCCCCccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCC
Q 026472 79 QEVVEDFASENIVYL---ELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRG 155 (238)
Q Consensus 79 ~~~~~~~a~dgV~Y~---Elr~~P~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (238)
.+++.+++.-||-++ |...+|.. .++++.+.++.++++++.+ +
T Consensus 179 a~~~y~~~~GGvD~IKDDE~l~~q~f-----~p~~eRv~~~~~ai~~a~~-----------------------------e 224 (424)
T cd08208 179 AELGYQSWLGGLDIAKDDEMLADVDW-----CPLEERAALLGKARRRAEA-----------------------------E 224 (424)
T ss_pred HHHHHHHHcCCcccccccccccCCCC-----CCHHHHHHHHHHHHHHHHH-----------------------------h
Confidence 345556667787776 66565544 3778999999999998864 2
Q ss_pred CCcEEEEEEEEeCCCCHHHHHHHHHHHHhcC
Q 026472 156 KKIYVRLLLSIDRRETTEAAMETVKLALEMR 186 (238)
Q Consensus 156 ~~i~vrlI~~~~R~~~~e~~~~~~~la~~~~ 186 (238)
+|-.. ++.++=+-+.++..+..+.+.+.-
T Consensus 225 TG~~~--~ya~NiT~~~~em~~ra~~a~~~G 253 (424)
T cd08208 225 TGVPK--IYLANITDEVDRLMELHDVAVRNG 253 (424)
T ss_pred hCCcc--eEEEEccCCHHHHHHHHHHHHHhC
Confidence 34222 344433456788888888887753
No 171
>PRK08185 hypothetical protein; Provisional
Probab=27.12 E-value=2.2e+02 Score=25.24 Aligned_cols=67 Identities=9% Similarity=0.011 Sum_probs=48.0
Q ss_pred CCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCCCcccHHHHHH-HHHHcCCCeeEecCCCCChhHHHhhC
Q 026472 170 ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALK-FAREQGLQITLHCGEVHMSFECLLLL 238 (238)
Q Consensus 170 ~~~e~~~~~~~la~~~~~~~vvG~dL~G~E~~~~~~~f~~~f~-~ar~~gl~~t~HAGE~~~~~~i~~~~ 238 (238)
.+.+.++.+++-|.+.+.+.|+.+.-..-. +....+.+..+ .|++..+|+.+|.--..+.+.|..+|
T Consensus 21 ~n~e~~~avi~AAee~~sPvIl~~~~~~~~--~~~~~~~~~~~~~a~~~~vPV~lHLDHg~~~e~i~~ai 88 (283)
T PRK08185 21 ADSCFLRAVVEEAEANNAPAIIAIHPNELD--FLGDNFFAYVRERAKRSPVPFVIHLDHGATIEDVMRAI 88 (283)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEeCcchhh--hccHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHH
Confidence 468899999999988888777777543322 11233666554 46677999999998888888887654
No 172
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=27.03 E-value=2.5e+02 Score=26.49 Aligned_cols=68 Identities=13% Similarity=0.151 Sum_probs=40.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCCcEEEEeccC-CCCCCCcccHHHHHHHHHHc--CCCeeEe-cCCCCChhHHHhh
Q 026472 168 RRETTEAAMETVKLALEMRDLGVVGIDLSG-NPTKGEWTTFLPALKFAREQ--GLQITLH-CGEVHMSFECLLL 237 (238)
Q Consensus 168 R~~~~e~~~~~~~la~~~~~~~vvG~dL~G-~E~~~~~~~f~~~f~~ar~~--gl~~t~H-AGE~~~~~~i~~~ 237 (238)
+..+++++.+.++......+. +-++.++| .|.--.+..-...+..+++. |+++++- .| ...|+.+.++
T Consensus 58 ~~Ltpee~~~~i~~v~~~~~~-~~~V~iaG~GEPLl~~e~~~~~l~~~~~~~~~i~i~lsTNG-~~l~e~i~~L 129 (442)
T TIGR01290 58 ELLTPEQALRKARQVAAEIPQ-LSVVGIAGPGDPLANIGKTFQTLELVARQLPDVKLCLSTNG-LMLPEHVDRL 129 (442)
T ss_pred ccCCHHHHHHHHHHHHHhcCC-CCEEEEecCCCcccCccccHHHHHHHHHhcCCCeEEEECCC-CCCHHHHHHH
Confidence 457888888888766654322 23344567 55444334445677777776 7888775 34 2235555443
No 173
>cd08206 RuBisCO_large_I_II_III Ribulose bisphosphate carboxylase large chain, Form I,II,III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubico-like proteins (RLP), are missing critical active site residues.
Probab=26.85 E-value=4.9e+02 Score=24.52 Aligned_cols=95 Identities=12% Similarity=0.118 Sum_probs=55.8
Q ss_pred CCHHHHHHHhHH--HHhhc-----CChHHHHHHHHHHHHHHHhcCCeEE---EEeecCCCCccCCCCHHHHHHHHHHHHH
Q 026472 52 RSLHEVFKLFDL--IHVLT-----TDHATVTRITQEVVEDFASENIVYL---ELRTTPKRNESIGMSKRSYMDAVVEGLR 121 (238)
Q Consensus 52 ~~l~~f~~~f~~--~~~l~-----~~~~~~~~~~~~~~~~~a~dgV~Y~---Elr~~P~~~~~~~~~~~~~l~~v~~~~~ 121 (238)
.++.+.+.++++ +..++ -+++.+.++ +.+++.-|+-++ |...++.. .++++.+.++.++++
T Consensus 121 ~GiR~~lgv~~RPL~~tiiKP~~Glsp~~~a~~----~y~~~~GGiD~IKDDE~l~~q~~-----~p~~eRv~~~~~a~~ 191 (414)
T cd08206 121 QGEREILGKYGRPLLGTIVKPKLGLSPKEYARV----VYEALRGGLDFVKDDENQNSQPF-----MRFEDRILFVAEAMD 191 (414)
T ss_pred hhHHHHhCCCCCceEEEecccccCCCHHHHHHH----HHHHHhcCCcccccCccCCCCCC-----CcHHHHHHHHHHHHH
Confidence 345555555542 22222 234455554 445555666655 55555443 378899999999999
Q ss_pred hhhhccccccccccccccccccccccccccCCCCCCcEEEEEEEEeCCCC-HHHHHHHHHHHHhcC
Q 026472 122 AVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYVRLLLSIDRRET-TEAAMETVKLALEMR 186 (238)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vrlI~~~~R~~~-~e~~~~~~~la~~~~ 186 (238)
++.+ ++|-. -++..+=+-+ +++..+..+.+.+.-
T Consensus 192 ~a~~-----------------------------eTG~~--~~y~~NiT~~~~~em~~ra~~~~~~G 226 (414)
T cd08206 192 KAEA-----------------------------ETGEA--KGHYLNITADTPEEMIKRAEFAKELG 226 (414)
T ss_pred HHHH-----------------------------hhCCc--ceEEeccCCCcHHHHHHHHHHHHHhC
Confidence 8854 23422 3455544455 778888888877653
No 174
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=26.54 E-value=2.3e+02 Score=23.04 Aligned_cols=60 Identities=20% Similarity=0.245 Sum_probs=41.6
Q ss_pred CCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCCCcccHHHHHHHHHHcCCCeeEecCCCCChhHHHh
Q 026472 169 RETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEVHMSFECLL 236 (238)
Q Consensus 169 ~~~~e~~~~~~~la~~~~~~~vvG~dL~G~E~~~~~~~f~~~f~~ar~~gl~~t~HAGE~~~~~~i~~ 236 (238)
..+.+-+...++++.. +.+-+|=|+... ++|.++..++|+.|..++.=..|...|+..+.
T Consensus 88 ~~Dv~laIDame~~~~---~~iD~~vLvSgD-----~DF~~Lv~~lre~G~~V~v~g~~~~ts~~L~~ 147 (160)
T TIGR00288 88 DVDVRMAVEAMELIYN---PNIDAVALVTRD-----ADFLPVINKAKENGKETIVIGAEPGFSTALQN 147 (160)
T ss_pred cccHHHHHHHHHHhcc---CCCCEEEEEecc-----HhHHHHHHHHHHCCCEEEEEeCCCCChHHHHH
Confidence 4555666666666542 235555554333 68999999999999999987768777776654
No 175
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=26.41 E-value=2.4e+02 Score=25.01 Aligned_cols=67 Identities=15% Similarity=0.088 Sum_probs=47.3
Q ss_pred CCHHHHHHHHHHHHhcCCCcEEEEeccCCCCC-CCcccHHHHHHH-HHHcCCCeeEecCCCCChhHHHhhC
Q 026472 170 ETTEAAMETVKLALEMRDLGVVGIDLSGNPTK-GEWTTFLPALKF-AREQGLQITLHCGEVHMSFECLLLL 238 (238)
Q Consensus 170 ~~~e~~~~~~~la~~~~~~~vvG~dL~G~E~~-~~~~~f~~~f~~-ar~~gl~~t~HAGE~~~~~~i~~~~ 238 (238)
.+.+.+..+++-|.+.+.+.+..+.-. +.. .+...+.+..+. |++..+|+.+|.--..+++.|+.+|
T Consensus 21 ~n~e~~~avi~AAe~~~sPvIi~~~~~--~~~~~~~~~~~~~~~~~a~~~~VPV~lHLDH~~~~~~i~~ai 89 (276)
T cd00947 21 NNLETLKAILEAAEETRSPVILQISEG--AIKYAGLELLVAMVKAAAERASVPVALHLDHGSSFELIKRAI 89 (276)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEcCcc--hhhhCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHH
Confidence 357888889998888887767666432 222 233556666654 5566999999998888888888764
No 176
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=25.96 E-value=4.7e+02 Score=23.64 Aligned_cols=70 Identities=17% Similarity=0.035 Sum_probs=42.3
Q ss_pred CcEEEEEEEEeCCCCHHHHHHHHHHHHhcC---------CC---------cEEEEeccCCCCCCC---------------
Q 026472 157 KIYVRLLLSIDRRETTEAAMETVKLALEMR---------DL---------GVVGIDLSGNPTKGE--------------- 203 (238)
Q Consensus 157 ~i~vrlI~~~~R~~~~e~~~~~~~la~~~~---------~~---------~vvG~dL~G~E~~~~--------------- 203 (238)
|=.+.+.+..+...+++.|.+.++...++. .+ .=..+-++++|....
T Consensus 161 G~~~~l~vDaN~~w~~~~A~~~~~~l~~~~l~~iEeP~~~~d~~~~~~L~~~~~~pia~gE~~~~~~~~~~~i~~~a~di 240 (361)
T cd03322 161 GFEFHLLHDVHHRLTPNQAARFGKDVEPYRLFWMEDPTPAENQEAFRLIRQHTATPLAVGEVFNSIWDWQNLIQERLIDY 240 (361)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhhhcCCCEEECCCCcccHHHHHHHHhcCCCCEEeccCCcCHHHHHHHHHhCCCCE
Confidence 334667788888888888777766543321 00 012233455554322
Q ss_pred ----------cccHHHHHHHHHHcCCCeeEecC
Q 026472 204 ----------WTTFLPALKFAREQGLQITLHCG 226 (238)
Q Consensus 204 ----------~~~f~~~f~~ar~~gl~~t~HAG 226 (238)
...+..+-+.|+++|+++.+|++
T Consensus 241 ~~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~~ 273 (361)
T cd03322 241 IRTTVSHAGGITPARKIADLASLYGVRTGWHGP 273 (361)
T ss_pred EecCccccCCHHHHHHHHHHHHHcCCeeeccCC
Confidence 24455566678888999999975
No 177
>TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III. Members of this protein family are the archaeal, single chain, type III form of ribulose bisphosphate carboxylase, or RuBisCO. Members act is a three-step pathway for conversion of the sugar moiety of AMP to two molecules of 3-phosphoglycerate. Many of these species use ADP-dependent sugar kinases, which form AMP, for glycolysis.
Probab=25.89 E-value=5.5e+02 Score=24.14 Aligned_cols=73 Identities=11% Similarity=-0.007 Sum_probs=48.1
Q ss_pred HHHHHHHHHhcCCeEE---EEeecCCCCccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCC
Q 026472 78 TQEVVEDFASENIVYL---ELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTR 154 (238)
Q Consensus 78 ~~~~~~~~a~dgV~Y~---Elr~~P~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (238)
+.+++.+++.-||-++ |.-.+|.. .++++.+.++.++++++.+
T Consensus 162 ~a~~~~~~~~GGvD~IKDDE~l~~q~~-----~p~~eRv~~~~~a~~~a~~----------------------------- 207 (412)
T TIGR03326 162 HAKVAYELWSGGVDLLKDDENLTSQPF-----NRFEERVEKLYKVRDKVEA----------------------------- 207 (412)
T ss_pred HHHHHHHHHhcCCceeecCCCCCCCCC-----ccHHHHHHHHHHHHHHHHH-----------------------------
Confidence 3455666777787766 44444333 3788999999999998754
Q ss_pred CCCcEEEEEEEEeCCCCHHHHHHHHHHHHhcC
Q 026472 155 GKKIYVRLLLSIDRRETTEAAMETVKLALEMR 186 (238)
Q Consensus 155 ~~~i~vrlI~~~~R~~~~e~~~~~~~la~~~~ 186 (238)
++|-. -++..+=+-++++..+..+.+.+.-
T Consensus 208 eTG~~--~~ya~NiT~~~~em~~ra~~~~~~G 237 (412)
T TIGR03326 208 ETGER--KEYLANITAPVREMERRAELVADLG 237 (412)
T ss_pred HhCCc--ceEEEEecCCHHHHHHHHHHHHHhC
Confidence 23432 3455555566788888888887753
No 178
>KOG4013 consensus Predicted Cu2+ homeostasis protein CutC [Inorganic ion transport and metabolism]
Probab=25.59 E-value=2.8e+02 Score=23.59 Aligned_cols=60 Identities=25% Similarity=0.264 Sum_probs=30.2
Q ss_pred EEEEeCCCC------HH---HHHHHHHHHHhcCCCcEEEEeccCCCCCC-CcccHHHHHHHHHHcCCCeeEecC
Q 026472 163 LLSIDRRET------TE---AAMETVKLALEMRDLGVVGIDLSGNPTKG-EWTTFLPALKFAREQGLQITLHCG 226 (238)
Q Consensus 163 I~~~~R~~~------~e---~~~~~~~la~~~~~~~vvG~dL~G~E~~~-~~~~f~~~f~~ar~~gl~~t~HAG 226 (238)
|+|+.|... .+ ..++-++++.++--+++|==-| .+++. +-..-+.+...+ .++|+|+|-.
T Consensus 62 ~ycMiRpR~GDFvYsd~Em~a~~~Dv~llk~~GAdGfVFGaL--t~dgsid~~~C~si~~~~--rplPVTFHRA 131 (255)
T KOG4013|consen 62 LYCMIRPRAGDFVYSDDEMAANMEDVELLKKAGADGFVFGAL--TSDGSIDRTSCQSIIETA--RPLPVTFHRA 131 (255)
T ss_pred eEEEEecCCCCcccchHHHHHHHHHHHHHHHcCCCceEEeec--CCCCCcCHHHHHHHHHhc--CCCceeeeee
Confidence 688888543 22 2444456666554444441111 22221 223344455444 4899999954
No 179
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=25.26 E-value=2.1e+02 Score=26.17 Aligned_cols=50 Identities=28% Similarity=0.417 Sum_probs=34.9
Q ss_pred CHHHHHHHHHHHHhc-CCCcEEEEeccCCCCCCCcccHHHHHHHHHHcCCCeeEecCCC
Q 026472 171 TTEAAMETVKLALEM-RDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEV 228 (238)
Q Consensus 171 ~~e~~~~~~~la~~~-~~~~vvG~dL~G~E~~~~~~~f~~~f~~ar~~gl~~t~HAGE~ 228 (238)
+++.+ +++|.++ +..+..|+.|-|.. ...++..+.+-+.|+|+..|-|=+
T Consensus 111 s~e~a---v~nA~rl~~eaGa~aVKlEGg~-----~~~~~~I~~l~~~GIPV~gHiGLt 161 (332)
T PLN02424 111 STDQA---VESAVRMLKEGGMDAVKLEGGS-----PSRVTAAKAIVEAGIAVMGHVGLT 161 (332)
T ss_pred CHHHH---HHHHHHHHHHhCCcEEEECCCc-----HHHHHHHHHHHHcCCCEEEeeccc
Confidence 45554 5555555 34568899987752 235677777778999999999864
No 180
>cd08592 PI-PLCc_gamma Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain.The PLC catalytic core domain is a TIM barrel with two highl
Probab=24.78 E-value=4.5e+02 Score=22.64 Aligned_cols=71 Identities=13% Similarity=0.066 Sum_probs=43.8
Q ss_pred HHHHHHHhcCCeEEEEeecCCCC------c----cCCCCHHHHHHHHHHHHHhhhhcccccccccccccccccccccccc
Q 026472 80 EVVEDFASENIVYLELRTTPKRN------E----SIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDA 149 (238)
Q Consensus 80 ~~~~~~a~dgV~Y~Elr~~P~~~------~----~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (238)
+...++...|++++|+-.-+... + ...+++++++++|.+-. |.
T Consensus 33 eay~~AL~~GcR~vElDvwdg~dgePvV~HG~tlts~i~f~dv~~~I~~~a--F~------------------------- 85 (229)
T cd08592 33 EAYARCLRMGCRCIELDCWDGPDGMPIIYHGHTLTSKIKFMDVLKTIKEHA--FV------------------------- 85 (229)
T ss_pred HHHHHHHHhCCCEEEEEeecCCCCCEEEEeCCcCCCCcCHHHHHHHHHHHh--cc-------------------------
Confidence 45555677999999998764321 1 12366677777665432 11
Q ss_pred ccCCCCCCcEEEEEEEEeCCCCHHHHHHHHHHHHh
Q 026472 150 CNGTRGKKIYVRLLLSIDRRETTEAAMETVKLALE 184 (238)
Q Consensus 150 ~~~~~~~~i~vrlI~~~~R~~~~e~~~~~~~la~~ 184 (238)
..+++ +|+++.=+.+++.-..+++...+
T Consensus 86 ---~s~yP----vIlslE~Hcs~~qQ~~ma~il~~ 113 (229)
T cd08592 86 ---TSEYP----VILSIENHCSLPQQRNMAQAFKE 113 (229)
T ss_pred ---CCCCC----EEEEEecCCCHHHHHHHHHHHHH
Confidence 13444 88999988888765555544444
No 181
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=24.78 E-value=2.7e+02 Score=24.73 Aligned_cols=68 Identities=9% Similarity=0.020 Sum_probs=47.2
Q ss_pred CCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCCCcccHHHHHH-HHHHcCCCeeEecCCCCChhHHHhhC
Q 026472 170 ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALK-FAREQGLQITLHCGEVHMSFECLLLL 238 (238)
Q Consensus 170 ~~~e~~~~~~~la~~~~~~~vvG~dL~G~E~~~~~~~f~~~f~-~ar~~gl~~t~HAGE~~~~~~i~~~~ 238 (238)
.+.+.+..+++-|.+.+.+.|+.+.-..-.. .+...+.+..+ .|++..+|+.+|---..+.+.|..+|
T Consensus 26 ~n~e~~~avi~AAee~~sPvIlq~~~~~~~~-~g~~~~~~~~~~~A~~~~VPValHLDH~~~~e~i~~ai 94 (284)
T PRK12857 26 NNMEIVQAIVAAAEAEKSPVIIQASQGAIKY-AGIEYISAMVRTAAEKASVPVALHLDHGTDFEQVMKCI 94 (284)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEechhHhhh-CCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHH
Confidence 3678889999989888877777764332211 22344555444 56677999999998888888877653
No 182
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=24.54 E-value=2.5e+02 Score=24.91 Aligned_cols=68 Identities=13% Similarity=0.030 Sum_probs=46.8
Q ss_pred CCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCCCcccHHHHHH-HHHHcCCCeeEecCCCCChhHHHhhC
Q 026472 170 ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALK-FAREQGLQITLHCGEVHMSFECLLLL 238 (238)
Q Consensus 170 ~~~e~~~~~~~la~~~~~~~vvG~dL~G~E~~~~~~~f~~~f~-~ar~~gl~~t~HAGE~~~~~~i~~~~ 238 (238)
.+.+.+..+++-|.+.+.+.++.+.-..-.. .+...+.+... .|++.++|+.+|---..+.+.|..+|
T Consensus 26 ~n~e~~~avi~AAee~~sPvIiq~~~~~~~~-~g~~~~~~~~~~~a~~~~VPValHLDH~~~~e~i~~ai 94 (284)
T PRK12737 26 HNLETLQVVVETAAELRSPVILAGTPGTFSY-AGTDYIVAIAEVAARKYNIPLALHLDHHEDLDDIKKKV 94 (284)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEcCccHHhh-CCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHH
Confidence 4678899999999888877777654332211 12244555443 56677999999998888888887653
No 183
>KOG3968 consensus Atrazine chlorohydrolase/guanine deaminase [Nucleotide transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=24.54 E-value=84 Score=29.65 Aligned_cols=10 Identities=50% Similarity=0.816 Sum_probs=8.9
Q ss_pred CCh-hhhcccc
Q 026472 7 MPK-VELHAHL 16 (238)
Q Consensus 7 lPK-~eLH~HL 16 (238)
||- +|.|.|.
T Consensus 72 mPGfVdtH~H~ 82 (439)
T KOG3968|consen 72 MPGFVDTHIHP 82 (439)
T ss_pred ecceeecccch
Confidence 788 9999996
No 184
>TIGR03583 EF_0837 probable amidohydrolase EF_0837/AHA_3915. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. These proteins resemble aminohydrolases (see pfam01979), including dihydroorotases. The function is unknown.
Probab=24.45 E-value=3.1e+02 Score=24.61 Aligned_cols=43 Identities=16% Similarity=0.090 Sum_probs=25.3
Q ss_pred CCcEEEEec----cC-CCCCCCcccHHHHHHHHHHcCCCeeEecCCCCC
Q 026472 187 DLGVVGIDL----SG-NPTKGEWTTFLPALKFAREQGLQITLHCGEVHM 230 (238)
Q Consensus 187 ~~~vvG~dL----~G-~E~~~~~~~f~~~f~~ar~~gl~~t~HAGE~~~ 230 (238)
+..++||.. ++ .|.+-.+..+...+..+ +.|+++.+|++++..
T Consensus 143 ~~~vv~~~~~~t~~~i~E~gl~~~~~~~~l~~~-~~~~pv~vH~~~a~~ 190 (365)
T TIGR03583 143 PDFIVGLKARMSKSVVGDNGIEPLEIAKQIQQE-NLELPLMVHIGSAPP 190 (365)
T ss_pred cCcEEEEEEeecccccccCCcCHHHHHHHHHHh-cCCCcEEEEeCCCcc
Confidence 445777542 22 34322234555555444 578999999998764
No 185
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=24.27 E-value=4.4e+02 Score=22.32 Aligned_cols=21 Identities=10% Similarity=0.022 Sum_probs=18.0
Q ss_pred HHHHHHHHHhcCCeEEEEeec
Q 026472 78 TQEVVEDFASENIVYLELRTT 98 (238)
Q Consensus 78 ~~~~~~~~a~dgV~Y~Elr~~ 98 (238)
+.+.++.+++-|..++|+...
T Consensus 15 l~~~l~~~~~~G~~~vEl~~~ 35 (275)
T PRK09856 15 IEHAFRDASELGYDGIEIWGG 35 (275)
T ss_pred HHHHHHHHHHcCCCEEEEccC
Confidence 567888999999999999754
No 186
>PLN02610 probable methionyl-tRNA synthetase
Probab=24.25 E-value=82 Score=32.24 Aligned_cols=86 Identities=17% Similarity=0.231 Sum_probs=47.7
Q ss_pred hhhcc-ccCCC-CCHHHHHHHHHHhccCCCCC---chh---------------hhHHHhcCCCCHHHHHHHhHHHHh-h-
Q 026472 10 VELHA-HLNGS-IRDSTLLELARVLGEKGVIV---FSD---------------VEHVIMKSDRSLHEVFKLFDLIHV-L- 67 (238)
Q Consensus 10 ~eLH~-HL~Gs-i~~~tl~~la~~~~~~~~~~---~~~---------------~~~~~~~~~~~l~~f~~~f~~~~~-l- 67 (238)
+.||+ |+-|+ ++.+.+.+..+..| +++.. .++ ++++..+....+.+.++.|..-.. .
T Consensus 30 g~~HlGH~~~~~l~aDv~aRy~r~~G-~~v~f~~GtDehG~~i~~~A~~~g~~p~e~~d~~~~~~~~~~~~l~i~~D~f~ 108 (801)
T PLN02610 30 NVPHLGNIIGCVLSADVFARYCRLRG-YNAIYICGTDEYGTATETKALEENCTPKEICDKYHAIHKEVYDWFDISFDKFG 108 (801)
T ss_pred CCcccchhhhhHHHHHHHHHHHHhCC-CceEecccccCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCccccCc
Confidence 68887 88885 77888888777533 12211 111 111111111112222232221111 1
Q ss_pred cCChHHHHHHHHHHHHHHHhcCCeEEEEe
Q 026472 68 TTDHATVTRITQEVVEDFASENIVYLELR 96 (238)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~a~dgV~Y~Elr 96 (238)
-++.+.....+++++..+.+.|.+|.--.
T Consensus 109 rT~~~~h~~~vq~~f~~L~~~G~Iy~~~~ 137 (801)
T PLN02610 109 RTSTPQQTEICQAIFKKLMENNWLSENTM 137 (801)
T ss_pred cCCCHHHHHHHHHHHHHHHHCCCEEEeeE
Confidence 23456789999999999999999987554
No 187
>cd01294 DHOase Dihydroorotase (DHOase) catalyzes the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in the pyrimidine biosynthesis. In contrast to the large polyfunctional CAD proteins of higher organisms, this group of DHOases is monofunctional and mainly dimeric.
Probab=24.15 E-value=1e+02 Score=27.50 Aligned_cols=24 Identities=17% Similarity=0.335 Sum_probs=15.1
Q ss_pred ccHHHHHHHHHHcCCCeeEecCCC
Q 026472 205 TTFLPALKFAREQGLQITLHCGEV 228 (238)
Q Consensus 205 ~~f~~~f~~ar~~gl~~t~HAGE~ 228 (238)
..+.++|+.+++.|+++.+||+..
T Consensus 113 ~~l~~~~e~~~~~g~~V~vHaE~~ 136 (335)
T cd01294 113 EKIYPVLEAMQKLGMPLLVHGEVP 136 (335)
T ss_pred HHHHHHHHHHHHcCCeEEEecCCC
Confidence 345666666666666666776653
No 188
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=23.70 E-value=5.8e+02 Score=23.48 Aligned_cols=73 Identities=15% Similarity=0.058 Sum_probs=47.9
Q ss_pred HHHHHHHHHHhcCCeEE---EEeecCCCCccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCC
Q 026472 77 ITQEVVEDFASENIVYL---ELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGT 153 (238)
Q Consensus 77 ~~~~~~~~~a~dgV~Y~---Elr~~P~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (238)
.+.+++.+++.-||-.+ |.-.++.. .++++-+.++.++++++.+
T Consensus 142 ~~a~~~~~~~~gGvD~IKdDe~l~~~~~-----~p~~eRv~~v~~av~~a~~---------------------------- 188 (364)
T cd08210 142 ELAELAYAFALGGIDIIKDDHGLADQPF-----APFEERVKACQEAVAEANA---------------------------- 188 (364)
T ss_pred HHHHHHHHHHhcCCCeeecCccccCccC-----CCHHHHHHHHHHHHHHHHh----------------------------
Confidence 44455666777888887 66554433 4889999999999998753
Q ss_pred CCCCcEEEEEEEEeCCCCHHHHHHHHHHHHhc
Q 026472 154 RGKKIYVRLLLSIDRRETTEAAMETVKLALEM 185 (238)
Q Consensus 154 ~~~~i~vrlI~~~~R~~~~e~~~~~~~la~~~ 185 (238)
++|=.+ ++..+=.-+..++.+..+.|.+.
T Consensus 189 -eTG~~~--~y~~Nita~~~em~~ra~~a~~~ 217 (364)
T cd08210 189 -ETGGRT--LYAPNVTGPPTQLLERARFAKEA 217 (364)
T ss_pred -hcCCcc--eEEEecCCCHHHHHHHHHHHHHc
Confidence 344333 33333334566788888888764
No 189
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=23.57 E-value=2.9e+02 Score=24.60 Aligned_cols=69 Identities=9% Similarity=0.108 Sum_probs=47.5
Q ss_pred CCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCCCcccHHHHHHH-HHHcC--CCeeEecCCCCChhHHHhhC
Q 026472 170 ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKF-AREQG--LQITLHCGEVHMSFECLLLL 238 (238)
Q Consensus 170 ~~~e~~~~~~~la~~~~~~~vvG~dL~G~E~~~~~~~f~~~f~~-ar~~g--l~~t~HAGE~~~~~~i~~~~ 238 (238)
.+.+.+..+++-|-+.+.+.++.+.-..-...++...+.+..+. |++.. +|+.+|---..+.+.|..+|
T Consensus 26 ~n~e~~~avi~AAee~~sPvIl~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~vPV~lHLDHg~~~e~i~~ai 97 (286)
T PRK08610 26 NNLEFTQAILEASQEENAPVILGVSEGAARYMSGFYTVVKMVEGLMHDLNITIPVAIHLDHGSSFEKCKEAI 97 (286)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEcCccHHhhcCcHHHHHHHHHHHHHHcCCCCCEEEECCCCCCHHHHHHHH
Confidence 46888899999888888777776644332222224446666654 44445 89999998888888887654
No 190
>cd08148 RuBisCO_large Ribulose bisphosphate carboxylase large chain. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions.
Probab=23.47 E-value=5.9e+02 Score=23.52 Aligned_cols=74 Identities=20% Similarity=0.130 Sum_probs=48.8
Q ss_pred HHHHHHHHHHhcCCeEE---EEeecCCCCccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCC
Q 026472 77 ITQEVVEDFASENIVYL---ELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGT 153 (238)
Q Consensus 77 ~~~~~~~~~a~dgV~Y~---Elr~~P~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (238)
-+.+++.+++.-||-++ |...++.. .++++.+.++.++++++.+
T Consensus 144 ~~a~~~y~~~~GG~D~IKDDE~l~~q~~-----~p~~eRv~~~~~a~~~a~~---------------------------- 190 (366)
T cd08148 144 YTAEAAYAAALGGLDLIKDDETLTDQPF-----CPLRDRITEVAAALDRVQE---------------------------- 190 (366)
T ss_pred HHHHHHHHHHhCCCCccccccccCCCCC-----CcHHHHHHHHHHHHHHHHH----------------------------
Confidence 34455666777787776 56555443 3778999999999998864
Q ss_pred CCCCcEEEEEEEEeCCCCHHHHHHHHHHHHhcC
Q 026472 154 RGKKIYVRLLLSIDRRETTEAAMETVKLALEMR 186 (238)
Q Consensus 154 ~~~~i~vrlI~~~~R~~~~e~~~~~~~la~~~~ 186 (238)
++|-. -++..+=.-+.++..+..+.+.+.-
T Consensus 191 -eTG~~--~~y~~NiT~~~~em~~ra~~~~~~G 220 (366)
T cd08148 191 -ETGEK--KLYAVNVTAGTFEIIERAERALELG 220 (366)
T ss_pred -hhCCc--ceEEEEccCCHHHHHHHHHHHHHhC
Confidence 23422 3455555566677788888887653
No 191
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=23.47 E-value=2.8e+02 Score=24.71 Aligned_cols=68 Identities=7% Similarity=0.094 Sum_probs=45.0
Q ss_pred CCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCCCcccHHHHHH-HHHHc--CCCeeEecCCCCChhHHHhhC
Q 026472 170 ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALK-FAREQ--GLQITLHCGEVHMSFECLLLL 238 (238)
Q Consensus 170 ~~~e~~~~~~~la~~~~~~~vvG~dL~G~E~~~~~~~f~~~f~-~ar~~--gl~~t~HAGE~~~~~~i~~~~ 238 (238)
.+.+.+..+++-|.+.+.+.|+.+.-....-.+....+.+..+ .|++. ++|+.+|---. +.+.|+++|
T Consensus 26 ~n~e~~~avi~aAe~~~sPvIlq~s~~~~~~~~~~~~~~~~~~~~a~~~~~~vPV~lHLDH~-~~~~i~~ai 96 (293)
T PRK07315 26 NNLEWTQAILRAAEAKKAPVLIQTSMGAAKYMGGYKVCKNLIENLVESMGITVPVAIHLDHG-HYEDALECI 96 (293)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEcCccHHhhcCcHHHHHHHHHHHHHHcCCCCcEEEECCCC-CHHHHHHHH
Confidence 4688899999999888887777764432221122344455444 35556 77999999877 677777654
No 192
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=23.06 E-value=2.2e+02 Score=25.54 Aligned_cols=52 Identities=27% Similarity=0.362 Sum_probs=37.1
Q ss_pred CCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCCCcccHHHHHHHHHHcCCCeeEe
Q 026472 169 RETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLH 224 (238)
Q Consensus 169 ~~~~e~~~~~~~la~~~~~~~vvG~dL~G~E~~~~~~~f~~~f~~ar~~gl~~t~H 224 (238)
..+.+...++++.+.+. ++..|.+.|.|.--. .+|.++++.+++.|+.+++-
T Consensus 36 ~l~~e~~~~ii~~~~~~---g~~~v~~~GGEPll~-~~~~~ii~~~~~~g~~~~l~ 87 (358)
T TIGR02109 36 ELTTEEWTDVLTQAAEL---GVLQLHFSGGEPLAR-PDLVELVAHARRLGLYTNLI 87 (358)
T ss_pred CCCHHHHHHHHHHHHhc---CCcEEEEeCcccccc-ccHHHHHHHHHHcCCeEEEE
Confidence 45677777777776554 355677888776533 46889999999988876553
No 193
>cd08209 RLP_DK-MTP-1-P-enolase 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Ribulose bisphosphate carboxylase like proteins (RLPs) similar to B. subtilis YkrW protein, have been identified as 2,3-diketo-5-methylthiopentyl-1-phosphate enolases. They catalyze the tautomerization of 2,3-diketo-5-methylthiopentane 1-phosphate (DK-MTP 1-P). This is an important step in the methionine salvage pathway in which 5-methylthio-D-ribose (MTR) derived from 5'-methylthioadenosine is converted to methionine.
Probab=23.03 E-value=6.2e+02 Score=23.61 Aligned_cols=94 Identities=12% Similarity=0.087 Sum_probs=55.9
Q ss_pred CHHHHHHHhHH--HHhhc-----CChHHHHHHHHHHHHHHHhcCCeEE---EEeecCCCCccCCCCHHHHHHHHHHHHHh
Q 026472 53 SLHEVFKLFDL--IHVLT-----TDHATVTRITQEVVEDFASENIVYL---ELRTTPKRNESIGMSKRSYMDAVVEGLRA 122 (238)
Q Consensus 53 ~l~~f~~~f~~--~~~l~-----~~~~~~~~~~~~~~~~~a~dgV~Y~---Elr~~P~~~~~~~~~~~~~l~~v~~~~~~ 122 (238)
+..+.+..+++ +..++ -+++.+.++ +.+++.-||-++ |+-.++.. .++++-+.++.+++++
T Consensus 114 G~R~~lgv~~RPL~~tiiKP~~Glsp~~~a~~----~y~~~~GGvD~IKDDE~l~~q~~-----~p~~eRv~a~~~a~~~ 184 (391)
T cd08209 114 GIRQRLGVHDRPLLMSIFKGVLGLDLDDLAEQ----LREQALGGVDLIKDDEILFDNPL-----APALERIRACRPVLQE 184 (391)
T ss_pred HHHHHhCCCCCceEEeeeccccCCCHHHHHHH----HHHHHhCCCCcccccccCCCCCC-----CCHHHHHHHHHHHHHH
Confidence 45555555542 22222 234445544 455556666554 44444443 3788999999999998
Q ss_pred hhhccccccccccccccccccccccccccCCCCCCcEEEEEEEEeCCCCHHHHHHHHHHHHhcC
Q 026472 123 VSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYVRLLLSIDRRETTEAAMETVKLALEMR 186 (238)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vrlI~~~~R~~~~e~~~~~~~la~~~~ 186 (238)
+.+ ++|- +-++..+=+-+.++..+..+.+.+.-
T Consensus 185 a~~-----------------------------eTG~--~~~ya~NiT~~~~em~~ra~~~~~~G 217 (391)
T cd08209 185 VYE-----------------------------QTGR--RTLYAVNLTGPVFTLKEKARRLVEAG 217 (391)
T ss_pred HHH-----------------------------hhCC--cceEEEEcCCCHHHHHHHHHHHHHhC
Confidence 754 2342 23455555566788888888887753
No 194
>PRK05451 dihydroorotase; Provisional
Probab=23.00 E-value=1.2e+02 Score=27.30 Aligned_cols=25 Identities=16% Similarity=0.322 Sum_probs=21.6
Q ss_pred cccHHHHHHHHHHcCCCeeEecCCC
Q 026472 204 WTTFLPALKFAREQGLQITLHCGEV 228 (238)
Q Consensus 204 ~~~f~~~f~~ar~~gl~~t~HAGE~ 228 (238)
...+.++|+.+.+.|+++.+||+..
T Consensus 117 d~~l~~~~e~~~~~g~~V~vHaE~~ 141 (345)
T PRK05451 117 IEKIYPVLEAMQKLGMPLLVHGEVT 141 (345)
T ss_pred HHHHHHHHHHHHHcCCEEEEecCCC
Confidence 3568899999999999999999963
No 195
>PF01026 TatD_DNase: TatD related DNase The Pfam entry finds members not in the Prosite definition.; InterPro: IPR001130 This family of proteins are related to a large superfamily of metalloenzymes []. TatD, a member of this family has been shown experimentally to be a DNase enzyme []. Allantoinase 3.5.2.5 from EC, N-isopropylammelide isopropyl amidohydrolase 3.5.1 from EC and the SCN1 protein from fission yeast belong to this family.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters; PDB: 3E2V_B 1XWY_A 3GUW_D 3RCM_A 1ZZM_A 2XIO_A 1J6O_A 2GZX_A 3IPW_A 2Y1H_A ....
Probab=22.39 E-value=1.8e+02 Score=24.90 Aligned_cols=23 Identities=30% Similarity=0.676 Sum_probs=18.0
Q ss_pred ccHHHHHHHHHHcCCCeeEecCC
Q 026472 205 TTFLPALKFAREQGLQITLHCGE 227 (238)
Q Consensus 205 ~~f~~~f~~ar~~gl~~t~HAGE 227 (238)
.-|...++.|++.++|+.+|+--
T Consensus 111 ~vF~~ql~lA~~~~~pv~iH~r~ 133 (255)
T PF01026_consen 111 EVFERQLELAKELNLPVSIHCRK 133 (255)
T ss_dssp HHHHHHHHHHHHHTCEEEEEEES
T ss_pred HHHHHHHHHHHHhCCcEEEecCC
Confidence 34666677899999999999744
No 196
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=22.17 E-value=2.6e+02 Score=22.37 Aligned_cols=50 Identities=18% Similarity=0.249 Sum_probs=32.3
Q ss_pred CCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCCCcccHHHHHHHHHHcCCCeeEe
Q 026472 170 ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLH 224 (238)
Q Consensus 170 ~~~e~~~~~~~la~~~~~~~vvG~dL~G~E~~~~~~~f~~~f~~ar~~gl~~t~H 224 (238)
.+++...+.+. +..+ .+.+|.+.|.|.--.+ ++.++.+.+++.|+.+.+.
T Consensus 47 ~~~~~i~~~i~---~~~~-~~~~i~~sGGEPll~~-~l~~li~~~~~~g~~v~i~ 96 (191)
T TIGR02495 47 IEVEFLLEFLR---SRQG-LIDGVVITGGEPTLQA-GLPDFLRKVRELGFEVKLD 96 (191)
T ss_pred CCHHHHHHHHH---HhcC-CCCeEEEECCcccCcH-hHHHHHHHHHHCCCeEEEE
Confidence 45555544444 3322 3567888888865433 3888889998888877665
No 197
>cd00453 FTBP_aldolase_II Fructose/tagarose-bisphosphate aldolase class II. This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to yield fructose-1,6-bisphosphate. TBP-aldolase is tetrameric and produces tagarose-1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. Although structurally similar, the class I aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=22.02 E-value=2.7e+02 Score=25.52 Aligned_cols=69 Identities=14% Similarity=0.074 Sum_probs=46.3
Q ss_pred CCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCCC---------------cccHHHHHH-HHHHcCCCeeEecCCCC--Ch
Q 026472 170 ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGE---------------WTTFLPALK-FAREQGLQITLHCGEVH--MS 231 (238)
Q Consensus 170 ~~~e~~~~~~~la~~~~~~~vvG~dL~G~E~~~~---------------~~~f~~~f~-~ar~~gl~~t~HAGE~~--~~ 231 (238)
.+.+.+..+++-|.+.+.+.|+.+.-.|...... ...+.+... .|++.++|+.+|---.. ..
T Consensus 21 ~n~e~~~Avi~aAee~~sPvIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~VPV~lHLDH~~~~~~ 100 (340)
T cd00453 21 VGTDSINAVLETAAKVKAPVIVQFSNGGASFIAGKGVKSDVPQGAAILGAISGAHHVHQMAEHYGVPVILHTDHCAKKLL 100 (340)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEcCcchHHHhCCCcccccccchhhhhhHHHHHHHHHHHHHHCCCCEEEEcCCCCCCCH
Confidence 4678888999989888887777775533322111 233444443 46677999999987776 77
Q ss_pred hHHHhhC
Q 026472 232 FECLLLL 238 (238)
Q Consensus 232 ~~i~~~~ 238 (238)
+.|+.+|
T Consensus 101 e~i~~ai 107 (340)
T cd00453 101 PWIDGLL 107 (340)
T ss_pred HHHHHHH
Confidence 7777653
No 198
>cd01317 DHOase_IIa Dihydroorotase (DHOase), subgroup IIa; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis. This subgroup also contains proteins that lack the active site, like unc-33, a C.elegans protein involved in axon growth.
Probab=21.73 E-value=3.8e+02 Score=24.21 Aligned_cols=39 Identities=31% Similarity=0.391 Sum_probs=28.0
Q ss_pred CcEEEEeccCCCCCCCcccHHHHHHHHHHcCCCeeEecCCC
Q 026472 188 LGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEV 228 (238)
Q Consensus 188 ~~vvG~dL~G~E~~~~~~~f~~~f~~ar~~gl~~t~HAGE~ 228 (238)
.++++|-..+.. ..+...+..+|+.+++.|.++.+|+ |.
T Consensus 104 ~G~~~~k~~~~~-~~~~~~l~~~~~~~~~~g~~v~~H~-E~ 142 (374)
T cd01317 104 AGAVGFSDDGKP-IQDAELLRRALEYAAMLDLPIIVHP-ED 142 (374)
T ss_pred CCcEEEEcCCcC-CCCHHHHHHHHHHHHhcCCeEEEec-CC
Confidence 468888753321 1234567789999999999999999 54
No 199
>PLN02599 dihydroorotase
Probab=21.49 E-value=1.3e+02 Score=27.57 Aligned_cols=42 Identities=29% Similarity=0.461 Sum_probs=29.7
Q ss_pred CcEE-EEecc--C--CCCC---CCcccHHHHHHHHHHcCCCeeEecCCCC
Q 026472 188 LGVV-GIDLS--G--NPTK---GEWTTFLPALKFAREQGLQITLHCGEVH 229 (238)
Q Consensus 188 ~~vv-G~dL~--G--~E~~---~~~~~f~~~f~~ar~~gl~~t~HAGE~~ 229 (238)
.+++ ||-+- | ..+. .+...+.++|+.+++.|+++.+|+....
T Consensus 111 ~Gvv~gfKlyp~~~tt~s~~gv~d~~~l~~~le~~~e~G~~L~vH~E~~~ 160 (364)
T PLN02599 111 SGVVFAVKLYPAGATTNSQAGVTDLGKCLPVLEEMAEQGMPLLVHGEVTD 160 (364)
T ss_pred CCCcEEEEECcccCcCCCccccCCHHHHHHHHHHHHhcCCEEEEecCCCc
Confidence 3677 99863 1 1111 1236788999999999999999998743
No 200
>cd03330 Macro_2 Macro domain, Unknown family 2. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins containing a stand-alone macro domain.
Probab=21.33 E-value=3e+02 Score=20.81 Aligned_cols=48 Identities=17% Similarity=0.169 Sum_probs=34.6
Q ss_pred ChHHHHHHHHHHHHHHHhcCCeEEEEeecCCCCc-cCCCCHHHHHHHHHHHH
Q 026472 70 DHATVTRITQEVVEDFASENIVYLELRTTPKRNE-SIGMSKRSYMDAVVEGL 120 (238)
Q Consensus 70 ~~~~~~~~~~~~~~~~a~dgV~Y~Elr~~P~~~~-~~~~~~~~~l~~v~~~~ 120 (238)
+.+.++..++.+++.+.+.|+.-+ .-|.... ..|++++++.+.+.+++
T Consensus 84 ~~~~l~~~~~~~l~~a~~~~~~sI---A~P~igtG~~g~~~~~~a~i~~~~i 132 (133)
T cd03330 84 SEESVRKATRAALALADELGIESV---AFPAMGTGVGGLPKEDVARLMVEVI 132 (133)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEE---EECcccccCCCCCHHHHHHHHHHHh
Confidence 456788888888888887776521 2276654 46799999988888775
No 201
>PRK05672 dnaE2 error-prone DNA polymerase; Validated
Probab=21.30 E-value=66 Score=33.95 Aligned_cols=24 Identities=42% Similarity=0.573 Sum_probs=20.5
Q ss_pred hhhhccc-----cCCCCCHHHHHHHHHHh
Q 026472 9 KVELHAH-----LNGSIRDSTLLELARVL 32 (238)
Q Consensus 9 K~eLH~H-----L~Gsi~~~tl~~la~~~ 32 (238)
.+|||+| |+|+++++.+.+.|++.
T Consensus 5 fv~LHvHT~ySlLdg~~~~~elv~~A~~~ 33 (1046)
T PRK05672 5 YAELHCHSNFSFLDGASHPEELVERAARL 33 (1046)
T ss_pred eeeccccccCcccccCCCHHHHHHHHHHc
Confidence 5999999 46779999999999863
No 202
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=21.23 E-value=5.3e+02 Score=22.21 Aligned_cols=77 Identities=14% Similarity=0.170 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCeE----EEEeecCCCCcc--CCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccC
Q 026472 79 QEVVEDFASENIVY----LELRTTPKRNES--IGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNG 152 (238)
Q Consensus 79 ~~~~~~~a~dgV~Y----~Elr~~P~~~~~--~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (238)
.+.++.+..-|+.. +| .+|..+.. .+.+++++++++....+
T Consensus 123 ~e~l~~Lk~aG~~~v~i~~E--~~~~~~~~i~~~~s~~~~~~ai~~l~~------------------------------- 169 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHNLD--TSQEFYSNIISTHTYDDRVDTLENAKK------------------------------- 169 (296)
T ss_pred HHHHHHHHHcCCCEEEEccc--CCHHHHhhccCCCCHHHHHHHHHHHHH-------------------------------
Q ss_pred CCCCCcEEEEEEEEeCCCCHHHHHHHHHHHHhcCCCcEE
Q 026472 153 TRGKKIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVV 191 (238)
Q Consensus 153 ~~~~~i~vrlI~~~~R~~~~e~~~~~~~la~~~~~~~vv 191 (238)
....+.+.+|+.. ..+.++..+.++.+.++..+.+.
T Consensus 170 -~Gi~v~~~~i~Gl--~et~~d~~~~~~~l~~l~~~~i~ 205 (296)
T TIGR00433 170 -AGLKVCSGGIFGL--GETVEDRIGLALALANLPPESVP 205 (296)
T ss_pred -cCCEEEEeEEEeC--CCCHHHHHHHHHHHHhCCCCEEE
No 203
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=21.18 E-value=2.4e+02 Score=24.52 Aligned_cols=45 Identities=27% Similarity=0.536 Sum_probs=30.2
Q ss_pred HHHHHHHHhcCCCcEE-------------EEeccCCCCCCCcccHHHHHHHHHHcCCCeeEec
Q 026472 176 METVKLALEMRDLGVV-------------GIDLSGNPTKGEWTTFLPALKFAREQGLQITLHC 225 (238)
Q Consensus 176 ~~~~~la~~~~~~~vv-------------G~dL~G~E~~~~~~~f~~~f~~ar~~gl~~t~HA 225 (238)
.+++++|.+.+|+.|+ |+|+.++. ....++.+..++.|+++.+-.
T Consensus 76 ~em~~ia~~~kP~~vtLVPE~r~E~TTegGldv~~~~-----~~l~~~i~~L~~~gIrVSLFi 133 (239)
T PRK05265 76 EEMLDIALEVKPHQVTLVPEKREELTTEGGLDVAGQF-----DKLKPAIARLKDAGIRVSLFI 133 (239)
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCccCCccchhhcCH-----HHHHHHHHHHHHCCCEEEEEe
Confidence 4588889998876544 55555444 345566777778888877665
No 204
>COG1964 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=21.16 E-value=2.5e+02 Score=26.89 Aligned_cols=49 Identities=20% Similarity=0.328 Sum_probs=39.1
Q ss_pred CCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCCCcccHHHHHHHHHHcCC
Q 026472 170 ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGL 219 (238)
Q Consensus 170 ~~~e~~~~~~~la~~~~~~~vvG~dL~G~E~~~~~~~f~~~f~~ar~~gl 219 (238)
-+.++..+++++....++..-++|+++|.|.- -..+...+-+.|++.|+
T Consensus 91 pt~eqi~~Ml~~lk~e~p~~~~aIq~tGGEPT-vr~DL~eiv~~a~e~g~ 139 (475)
T COG1964 91 PTLEQIREMLRNLKKEHPVGANAVQFTGGEPT-LRDDLIEIIKIAREEGY 139 (475)
T ss_pred CCHHHHHHHHHHHHhcCCCCCceeEecCCCcc-chhhHHHHHHHHhhcCc
Confidence 45788899999988888777889999998853 23677788888888876
No 205
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=21.14 E-value=4e+02 Score=20.68 Aligned_cols=62 Identities=15% Similarity=0.004 Sum_probs=39.7
Q ss_pred EEEeCCCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCCCcccHHHHHHHHHHcCCCeeEecCC
Q 026472 164 LSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGE 227 (238)
Q Consensus 164 ~~~~R~~~~e~~~~~~~la~~~~~~~vvG~dL~G~E~~~~~~~f~~~f~~ar~~gl~~t~HAGE 227 (238)
++++.......+.++++...+.....+ -+-+.|...- +..++......+++.|+...++.|.
T Consensus 60 lS~~~~~~~~~~~~~~~~L~~~~~~~~-~i~vGG~~~~-~~~~~~~~~~~l~~~G~~~vf~~~~ 121 (137)
T PRK02261 60 VSSLYGHGEIDCRGLREKCIEAGLGDI-LLYVGGNLVV-GKHDFEEVEKKFKEMGFDRVFPPGT 121 (137)
T ss_pred EcCccccCHHHHHHHHHHHHhcCCCCC-eEEEECCCCC-CccChHHHHHHHHHcCCCEEECcCC
Confidence 455556677778888877765522221 2333343322 3356777888899999999999887
No 206
>COG1228 HutI Imidazolonepropionase and related amidohydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=21.12 E-value=1.1e+02 Score=28.61 Aligned_cols=35 Identities=11% Similarity=-0.024 Sum_probs=27.8
Q ss_pred CCcccHHHHHHHHHHcCCCeeEecCCCCChhHHHh
Q 026472 202 GEWTTFLPALKFAREQGLQITLHCGEVHMSFECLL 236 (238)
Q Consensus 202 ~~~~~f~~~f~~ar~~gl~~t~HAGE~~~~~~i~~ 236 (238)
+.+.+-..+|..|.+.|+++++||-+..+.....+
T Consensus 217 fs~~e~~~~l~~a~~~g~~v~~HA~~~~g~~~A~~ 251 (406)
T COG1228 217 FSPEEIRAVLAAALKAGIPVKAHAHGADGIKLAIR 251 (406)
T ss_pred cCHHHHHHHHHHHHHCCCceEEEecccchHHHHHH
Confidence 34455678999999999999999999887665443
No 207
>cd08619 PI-PLCXDc_plant Catalytic domain of phosphatidylinositol-specific phospholipase C, X domain containing proteins found in plants. The CD corresponds to the catalytic domain present in uncharacterized plant phosphatidylinositol-specific phospholipase C, X domain containing proteins (PI-PLCXD). The typical eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) has a multidomain organization that consists of a PLC catalytic core domain, and various regulatory domains. The catalytic core domain is assembled from two highly conserved X- and Y-regions split by a divergent linker sequence. In contrast, plant PI-PLCXDs contain a single TIM-barrel type catalytic domain, X domain, and are more closely related to bacterial PI-PLCs, which participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG). Although the biological function of plant PI-PLCXDs still remains u
Probab=21.08 E-value=2.2e+02 Score=25.39 Aligned_cols=19 Identities=16% Similarity=0.202 Sum_probs=14.1
Q ss_pred HHHHhcCCeEEEEeecCCC
Q 026472 83 EDFASENIVYLELRTTPKR 101 (238)
Q Consensus 83 ~~~a~dgV~Y~Elr~~P~~ 101 (238)
.+.-..||+|+++|..-..
T Consensus 63 ~~QL~~GiRyfDiRv~~~~ 81 (285)
T cd08619 63 YNQLCSGARVLDIRVQEDR 81 (285)
T ss_pred HHHHhCCceEEEEEecCCe
Confidence 3444589999999987543
No 208
>PRK04208 rbcL ribulose bisophosphate carboxylase; Reviewed
Probab=21.08 E-value=7.4e+02 Score=23.75 Aligned_cols=70 Identities=14% Similarity=0.047 Sum_probs=44.2
Q ss_pred HHHHHHHhcCCeEE---EEeecCCCCccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCC
Q 026472 80 EVVEDFASENIVYL---ELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGK 156 (238)
Q Consensus 80 ~~~~~~a~dgV~Y~---Elr~~P~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (238)
+++.+++.-||-++ |...++.. .++++.+.++.++++++.+ ++
T Consensus 180 ~~~y~~~~GGvD~IKDDE~l~~q~f-----~p~~~Rv~~~~~a~~~a~~-----------------------------eT 225 (468)
T PRK04208 180 RVVYEALRGGLDFTKDDENLNSQPF-----NRWRDRFLFVMEAIDKAEA-----------------------------ET 225 (468)
T ss_pred HHHHHHHhcCCceeeCCCCCCCCCC-----ccHHHHHHHHHHHHHHHHH-----------------------------hh
Confidence 44455556676666 45444433 3778899999999998753 33
Q ss_pred CcEEEEEEEEeCCCC-HHHHHHHHHHHHhc
Q 026472 157 KIYVRLLLSIDRRET-TEAAMETVKLALEM 185 (238)
Q Consensus 157 ~i~vrlI~~~~R~~~-~e~~~~~~~la~~~ 185 (238)
|-. -++.++=.-+ +++..+..+.+.+.
T Consensus 226 G~~--k~y~~NiT~~~~~em~~ra~~~~e~ 253 (468)
T PRK04208 226 GER--KGHYLNVTAPTMEEMYKRAEFAKEL 253 (468)
T ss_pred CCc--ceEEEecCCCCHHHHHHHHHHHHHh
Confidence 432 2344443444 78888888888775
No 209
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=20.76 E-value=5.8e+02 Score=22.39 Aligned_cols=68 Identities=19% Similarity=0.101 Sum_probs=38.1
Q ss_pred EEEEEEEEeCCCCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCCCcccHHHHHHHHHH-cCCCeeEecCCCC-ChhHHHh
Q 026472 159 YVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFARE-QGLQITLHCGEVH-MSFECLL 236 (238)
Q Consensus 159 ~vrlI~~~~R~~~~e~~~~~~~la~~~~~~~vvG~dL~G~E~~~~~~~f~~~f~~ar~-~gl~~t~HAGE~~-~~~~i~~ 236 (238)
.+++-+.++...+.+.+.+.++.+.++.-.++ |...++.++. .+++.++ .++|+. +||.. +++.++.
T Consensus 177 ~~~l~vD~n~~~~~~~A~~~~~~l~~~~l~~i--------EeP~~~~d~~-~~~~L~~~~~ipIa--~~E~~~~~~~~~~ 245 (316)
T cd03319 177 DARLRVDANQGWTPEEAVELLRELAELGVELI--------EQPVPAGDDD-GLAYLRDKSPLPIM--ADESCFSAADAAR 245 (316)
T ss_pred CCeEEEeCCCCcCHHHHHHHHHHHHhcCCCEE--------ECCCCCCCHH-HHHHHHhcCCCCEE--EeCCCCCHHHHHH
Confidence 56677888888888888777776654421112 5554444433 3444443 356654 46643 5655544
Q ss_pred h
Q 026472 237 L 237 (238)
Q Consensus 237 ~ 237 (238)
+
T Consensus 246 ~ 246 (316)
T cd03319 246 L 246 (316)
T ss_pred H
Confidence 3
No 210
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=20.66 E-value=4.6e+02 Score=21.22 Aligned_cols=23 Identities=13% Similarity=0.134 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHhcCCeEEEEeec
Q 026472 76 RITQEVVEDFASENIVYLELRTT 98 (238)
Q Consensus 76 ~~~~~~~~~~a~dgV~Y~Elr~~ 98 (238)
.-+.++++.+.+-|+..+|+|++
T Consensus 16 ~~~~~~~~~l~~~G~~~vev~~~ 38 (190)
T cd00452 16 EDALALAEALIEGGIRAIEITLR 38 (190)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCC
Confidence 34557788888999999999986
No 211
>TIGR03332 salvage_mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Members of this family are the methionine salvage pathway enzyme 2,3-diketo-5-methylthiopentyl-1-phosphate enolase, a homolog of RuBisCO. This protein family seems restricted to Bacillus subtilis and close relatives, where two separate proteins carry the enolase and phosphatase activities that in other species occur in a single protein, MtnC (TIGR01691).
Probab=20.59 E-value=7e+02 Score=23.44 Aligned_cols=94 Identities=14% Similarity=0.126 Sum_probs=54.4
Q ss_pred CCHHHHHHHhH--HHHhhcC-----ChHHHHHHHHHHHHHHHhcCCeEE---EEeecCCCCccCCCCHHHHHHHHHHHHH
Q 026472 52 RSLHEVFKLFD--LIHVLTT-----DHATVTRITQEVVEDFASENIVYL---ELRTTPKRNESIGMSKRSYMDAVVEGLR 121 (238)
Q Consensus 52 ~~l~~f~~~f~--~~~~l~~-----~~~~~~~~~~~~~~~~a~dgV~Y~---Elr~~P~~~~~~~~~~~~~l~~v~~~~~ 121 (238)
.++.+.+..++ .+..+++ +++.+. +++.+++.-||-.+ |.-.+|.. .++++-+.++.++++
T Consensus 128 ~G~R~~lgv~~RPL~~tiiKp~~Gl~~~~~A----~~~y~~~~GGvD~IKDDE~l~dq~~-----~p~~~Rv~~~~~a~~ 198 (407)
T TIGR03332 128 DGIRKLLGVHERPLLMSIFKGMIGRDLGYLK----EQLRQQALGGVDLVKDDEILFETGL-----APFEKRITEGKEVLQ 198 (407)
T ss_pred hHHHHHhCCCCCceeEeEeCCccCCCHHHHH----HHHHHHhccCcccccCCCCCCCCCC-----CCHHHHHHHHHHHHH
Confidence 35555666554 2333333 344333 44555566666554 44344333 367889999999999
Q ss_pred hhhhccccccccccccccccccccccccccCCCCCCcEEEEEEEEeCCCCHHHHHHHHHHHHhc
Q 026472 122 AVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYVRLLLSIDRRETTEAAMETVKLALEM 185 (238)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vrlI~~~~R~~~~e~~~~~~~la~~~ 185 (238)
++.+ ++|- +-++..+=+-+..+..+..+.+.+.
T Consensus 199 ~a~~-----------------------------eTG~--~~~y~~NiT~~~~em~~ra~~a~~~ 231 (407)
T TIGR03332 199 EVYE-----------------------------QTGH--KTLYAVNLTGRTFDLKDKAKRAAEL 231 (407)
T ss_pred HHHH-----------------------------HHCC--cceEeecCCCCHHHHHHHHHHHHHh
Confidence 8864 2342 2345555555666677777777664
No 212
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=20.02 E-value=4.5e+02 Score=23.33 Aligned_cols=69 Identities=13% Similarity=0.147 Sum_probs=46.5
Q ss_pred CCHHHHHHHHHHHHhcCCCcEEEEeccCCCCCCCcccHHHHHHHH-HHcC--CCeeEecCCCCChhHHHhhC
Q 026472 170 ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFA-REQG--LQITLHCGEVHMSFECLLLL 238 (238)
Q Consensus 170 ~~~e~~~~~~~la~~~~~~~vvG~dL~G~E~~~~~~~f~~~f~~a-r~~g--l~~t~HAGE~~~~~~i~~~~ 238 (238)
.+.+.++.+++-|.+.+.+.++.+.-..-....+...+.+..+.+ ++.. +|+.+|---..+.+.|..+|
T Consensus 26 ~n~e~~~avi~AAe~~~sPvIiq~~~~~~~~~~~~~~~~~~~~~~a~~~~~~VPV~lHLDHg~~~e~i~~ai 97 (285)
T PRK07709 26 NNLEWTQAILAAAEEEKSPVILGVSEGAARHMTGFKTVVAMVKALIEEMNITVPVAIHLDHGSSFEKCKEAI 97 (285)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEcCcchhhhcCCHHHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHH
Confidence 468889999999988888777766332221112334455555543 3444 89999998888888887764
Done!