BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026473
(238 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1DKR|A Chain A, Crystal Structures Of Bacillus Subtilis
Phosphoribosylpyrophosphate Synthetase: Molecular Basis
Of Allosteric Inhibition And Activation.
pdb|1DKR|B Chain B, Crystal Structures Of Bacillus Subtilis
Phosphoribosylpyrophosphate Synthetase: Molecular Basis
Of Allosteric Inhibition And Activation.
pdb|1DKU|A Chain A, Crystal Structures Of Bacillus Subtilis
Phosphoribosylpyrophosphate Synthetase: Molecular Basis
Of Allosteric Inhibition And Activation.
pdb|1DKU|B Chain B, Crystal Structures Of Bacillus Subtilis
Phosphoribosylpyrophosphate Synthetase: Molecular Basis
Of Allosteric Inhibition And Activation.
pdb|1IBS|A Chain A, Phosphoribosyldiphosphate Synthetase In Complex With
Cadmium Ions
pdb|1IBS|B Chain B, Phosphoribosyldiphosphate Synthetase In Complex With
Cadmium Ions
Length = 317
Score = 281 bits (720), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 131/232 (56%), Positives = 175/232 (75%), Gaps = 3/232 (1%)
Query: 1 MGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASA 60
+GV+LGK ++ RF+DGE+ + ++ES+RGCD Y++Q T P NE++MELLIM+DA +RASA
Sbjct: 29 VGVQLGKCSVTRFSDGEVQINIEESIRGCDCYIIQSTSDPVNEHIMELLIMVDALKRASA 88
Query: 61 KNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPV 120
K I VIPY+GYAR DRK + RE I AKL ANL+ AGA RV+A DLH+ Q G+FDIP+
Sbjct: 89 KTINIVIPYYGYARQDRKARSREPITAKLFANLLETAGATRVIALDLHAPQIQGFFDIPI 148
Query: 121 DHVYCQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNV 180
DH+ P++ +Y K + D+V+VSPD GGV RAR A +L AP+AI+DKRR NV
Sbjct: 149 DHLMGVPILGEYFEGKNLE--DIVIVSPDHGGVTRARKLADRLK-APIAIIDKRRPRPNV 205
Query: 181 AEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHAVF 232
AEVMN++G+++GK A+++DD+IDTAGTI A L + GA+EVYACCTH V
Sbjct: 206 AEVMNIVGNIEGKTAILIDDIIDTAGTITLAANALVENGAKEVYACCTHPVL 257
>pdb|3DAH|A Chain A, 2.3 A Crystal Structure Of Ribose-Phosphate
Pyrophosphokinase From Burkholderia Pseudomallei
pdb|3DAH|B Chain B, 2.3 A Crystal Structure Of Ribose-Phosphate
Pyrophosphokinase From Burkholderia Pseudomallei
pdb|3DAH|C Chain C, 2.3 A Crystal Structure Of Ribose-Phosphate
Pyrophosphokinase From Burkholderia Pseudomallei
Length = 319
Score = 266 bits (679), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 129/233 (55%), Positives = 177/233 (75%), Gaps = 4/233 (1%)
Query: 1 MGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASA 60
+G+ LGK + RF+DGEI V++QE+VRG DV+++Q TC P N+NLMEL+IM+DA +RASA
Sbjct: 27 LGIPLGKAMVSRFSDGEIQVEIQENVRGKDVFVLQSTCAPTNDNLMELMIMVDALKRASA 86
Query: 61 KNITAVIPYFGYARADRKTQ-GRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIP 119
ITA IPYFGYAR DR+ + R +I+AK+VAN++ AG +R++ DLH+ Q G+FDIP
Sbjct: 87 GRITAAIPYFGYARQDRRPRSARVAISAKVVANMLEIAGVERIITMDLHADQIQGFFDIP 146
Query: 120 VDHVYCQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHN 179
VD++Y P++L L + DL+VVSPDVGGV RARA AK+L + LAI+DKRR N
Sbjct: 147 VDNIYATPILLGDLRKQNYP--DLLVVSPDVGGVVRARALAKQL-NCDLAIIDKRRPKAN 203
Query: 180 VAEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHAVF 232
VAEVMN+IG+V+G+ V++DDM+DTAGT+ K A +L + GA++V+A TH V
Sbjct: 204 VAEVMNIIGEVEGRTCVIMDDMVDTAGTLCKAAQVLKERGAKQVFAYATHPVL 256
>pdb|2H06|A Chain A, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1
pdb|2H06|B Chain B, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1
pdb|2HCR|A Chain A, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1 In Complex With Amp(Atp), Cadmium And
Sulfate Ion
pdb|2HCR|B Chain B, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1 In Complex With Amp(Atp), Cadmium And
Sulfate Ion
pdb|3EFH|A Chain A, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1
pdb|3EFH|B Chain B, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1
pdb|3S5J|B Chain B, 2.0a Crystal Structure Of Human Phosphoribosyl
Pyrophosphate Synthetase 1
pdb|3S5J|A Chain A, 2.0a Crystal Structure Of Human Phosphoribosyl
Pyrophosphate Synthetase 1
Length = 326
Score = 225 bits (574), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 112/232 (48%), Positives = 154/232 (66%), Gaps = 1/232 (0%)
Query: 1 MGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASA 60
+G+ELGK+ K+F++ E V++ ESVRG DVY+VQ C N+NLMELLIMI+AC+ ASA
Sbjct: 23 LGLELGKVVTKKFSNQETCVEIGESVRGEDVYIVQSGCGEINDNLMELLIMINACKIASA 82
Query: 61 KNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPV 120
+TAVIP F YAR D+K + R I+AKLVAN+++ AGAD ++ DLH+ Q G+FDIPV
Sbjct: 83 SRVTAVIPCFPYARQDKKDKSRAPISAKLVANMLSVAGADHIITMDLHASQIQGFFDIPV 142
Query: 121 DHVYCQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNV 180
D++Y +P +L ++ + +VSPD GG R + A +L + A++ K R N
Sbjct: 143 DNLYAEPAVLKWIRENISEWRNCTIVSPDAGGAKRVTSIADRL-NVDFALIHKERKKANE 201
Query: 181 AEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHAVF 232
+ M L+GDVK +VA++VDDM DT GTI A L GA VYA TH +F
Sbjct: 202 VDRMVLVGDVKDRVAILVDDMADTCGTICHAADKLLSAGATRVYAILTHGIF 253
>pdb|2H07|A Chain A, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1 Mutant S132a
pdb|2H07|B Chain B, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1 Mutant S132a
Length = 326
Score = 225 bits (574), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 112/232 (48%), Positives = 154/232 (66%), Gaps = 1/232 (0%)
Query: 1 MGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASA 60
+G+ELGK+ K+F++ E V++ ESVRG DVY+VQ C N+NLMELLIMI+AC+ ASA
Sbjct: 23 LGLELGKVVTKKFSNQETCVEIGESVRGEDVYIVQSGCGEINDNLMELLIMINACKIASA 82
Query: 61 KNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPV 120
+TAVIP F YAR D+K + R I+AKLVAN+++ AGAD ++ DLH+ Q G+FDIPV
Sbjct: 83 SRVTAVIPCFPYARQDKKDKSRAPISAKLVANMLSVAGADHIITMDLHAAQIQGFFDIPV 142
Query: 121 DHVYCQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNV 180
D++Y +P +L ++ + +VSPD GG R + A +L + A++ K R N
Sbjct: 143 DNLYAEPAVLKWIRENISEWRNCTIVSPDAGGAKRVTSIADRL-NVDFALIHKERKKANE 201
Query: 181 AEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHAVF 232
+ M L+GDVK +VA++VDDM DT GTI A L GA VYA TH +F
Sbjct: 202 VDRMVLVGDVKDRVAILVDDMADTCGTICHAADKLLSAGATRVYAILTHGIF 253
>pdb|2H08|A Chain A, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1 Mutant Y146m
pdb|2H08|B Chain B, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1 Mutant Y146m
Length = 326
Score = 222 bits (566), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 111/232 (47%), Positives = 153/232 (65%), Gaps = 1/232 (0%)
Query: 1 MGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASA 60
+G+ELGK+ K+F++ E V++ ESVRG DVY+VQ C N+NLMELLIMI+AC+ ASA
Sbjct: 23 LGLELGKVVTKKFSNQETCVEIGESVRGEDVYIVQSGCGEINDNLMELLIMINACKIASA 82
Query: 61 KNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPV 120
+TAVIP F YAR D+K + R I+AKLVAN+++ AGAD ++ DLH+ Q G+FDIPV
Sbjct: 83 SRVTAVIPCFPYARQDKKDKSRAPISAKLVANMLSVAGADHIITMDLHASQIQGFFDIPV 142
Query: 121 DHVYCQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNV 180
D++ +P +L ++ + +VSPD GG R + A +L + A++ K R N
Sbjct: 143 DNLMAEPAVLKWIRENISEWRNCTIVSPDAGGAKRVTSIADRL-NVDFALIHKERKKANE 201
Query: 181 AEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHAVF 232
+ M L+GDVK +VA++VDDM DT GTI A L GA VYA TH +F
Sbjct: 202 VDRMVLVGDVKDRVAILVDDMADTCGTICHAADKLLSAGATRVYAILTHGIF 253
>pdb|2JI4|A Chain A, Human Phosphoribosylpyrophosphate Synthetase - Associated
Protein 41 (Pap41)
Length = 379
Score = 137 bits (346), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 87/265 (32%), Positives = 143/265 (53%), Gaps = 31/265 (11%)
Query: 1 MGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASA 60
+GVE+GK+ + + + E VQ+QESVRG DV+++Q N +MELLIM+ AC+ + A
Sbjct: 52 LGVEMGKVQVYQEPNRETRVQIQESVRGKDVFIIQTVSKDVNTTIMELLIMVYACKTSCA 111
Query: 61 KNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPV 120
K+I VIPYF Y++ K + R SI +KL+A+++ +AG ++ DLH + G+F+IPV
Sbjct: 112 KSIIGVIPYFPYSK-QCKMRKRGSIVSKLLASMMCKAGLTHLITMDLHQKEIQGFFNIPV 170
Query: 121 DHVYCQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKL-----------SDAPLA 169
D++ P +L Y+ + + V+V+ RA++FA++L DA
Sbjct: 171 DNLRASPFLLQYIQEEIPDYRNAVIVAKSPASAKRAQSFAERLRLGIAVIHGEAQDAESD 230
Query: 170 IVDKRRHGHNVAEV-------------------MNLIGDVKGKVAVMVDDMIDTAGTIAK 210
+VD R V V + ++GDV G++A++VDD+ID +
Sbjct: 231 LVDGRHSPPMVRSVAAIHPSLEIPMLIPKEKPPITVVGDVGGRIAIIVDDIIDDVDSFLA 290
Query: 211 GAALLHQEGAREVYACCTHAVFRLD 235
A L + GA +++ TH + D
Sbjct: 291 AAETLKERGAYKIFVMATHGLLSSD 315
>pdb|2C4K|A Chain A, Crystal Structure Of Human Phosphoribosylpyrophosphate
Synthetase-Associated Protein 39 (Pap39)
pdb|2C4K|B Chain B, Crystal Structure Of Human Phosphoribosylpyrophosphate
Synthetase-Associated Protein 39 (Pap39)
pdb|2C4K|C Chain C, Crystal Structure Of Human Phosphoribosylpyrophosphate
Synthetase-Associated Protein 39 (Pap39)
pdb|2C4K|D Chain D, Crystal Structure Of Human Phosphoribosylpyrophosphate
Synthetase-Associated Protein 39 (Pap39)
pdb|2C4K|E Chain E, Crystal Structure Of Human Phosphoribosylpyrophosphate
Synthetase-Associated Protein 39 (Pap39)
pdb|2C4K|F Chain F, Crystal Structure Of Human Phosphoribosylpyrophosphate
Synthetase-Associated Protein 39 (Pap39)
Length = 370
Score = 128 bits (321), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 83/262 (31%), Positives = 140/262 (53%), Gaps = 32/262 (12%)
Query: 1 MGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASA 60
+G ELGK + + +GE V+++ESVRG D++++Q N +MELLIM A + A A
Sbjct: 49 LGAELGKSVVYQETNGETRVEIKESVRGQDIFIIQTIPRDVNTAVMELLIMAYALKTACA 108
Query: 61 KNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPV 120
+NI VIPYF Y++ K + R SI KL+A+++ +AG ++ DLH + G+F PV
Sbjct: 109 RNIIGVIPYFPYSKQS-KMRKRGSIVCKLLASMLAKAGLTHIITMDLHQKEIQGFFSFPV 167
Query: 121 DHVYCQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIV--------- 171
D++ P +L Y+ + + + V+V+ RA+++A++L LA++
Sbjct: 168 DNLRASPFLLQYIQEEIPNYRNAVIVAKSPDAAKRAQSYAERLRLG-LAVIHGEAQCTEL 226
Query: 172 --DKRRHG---------HNVAEV----------MNLIGDVKGKVAVMVDDMIDTAGTIAK 210
D RH H E+ + ++GDV G++A++VDD+ID +
Sbjct: 227 DMDDGRHSPPMVKNATVHPGLELPLMMAKEKPPITVVGDVGGRIAIIVDDIIDDVESFVA 286
Query: 211 GAALLHQEGAREVYACCTHAVF 232
A +L + GA ++Y TH +
Sbjct: 287 AAEILKERGAYKIYVMATHGIL 308
>pdb|3MBI|A Chain A, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp-Mg2+ And Ribose 5- Phosphate
pdb|3MBI|B Chain B, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp-Mg2+ And Ribose 5- Phosphate
pdb|3MBI|C Chain C, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp-Mg2+ And Ribose 5- Phosphate
pdb|3MBI|D Chain D, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp-Mg2+ And Ribose 5- Phosphate
Length = 287
Score = 117 bits (293), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 67/223 (30%), Positives = 121/223 (54%), Gaps = 10/223 (4%)
Query: 11 KRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVIPYF 70
+RF DGE+Y++ E + G +++++ T A +ME+++ + A + K++ + PY+
Sbjct: 32 RRFPDGELYLRYDEDLTGHNIFIIGNTHSDAE--VMEMILTLSAIQDYRTKSVNIIAPYY 89
Query: 71 GYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVIL 130
GYAR ++ + E I+++++ I + ++ + D+H +++ Y + ++ I+
Sbjct: 90 GYARQHQRYKNGEPISSQILTE-IYSSYSNSIATVDIHDEKTLSYSKVKFSDLHANDAIV 148
Query: 131 DYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVA-EVMNLIGD 189
Y + V VVSPD GG+AR + KL I KR V +V N+ D
Sbjct: 149 RYYKNVDVD----YVVSPDDGGLARVADISAKLGKKHFFIEKKRIDDRTVEMKVPNV--D 202
Query: 190 VKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHAVF 232
V GK ++VDD+I T GTIAK + LL ++GA ++Y H +F
Sbjct: 203 VNGKKLLIVDDIISTGGTIAKSSGLLREKGASKIYVSAVHGLF 245
>pdb|3LPN|A Chain A, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With An Atp Analog (Ampcpp).
pdb|3LPN|B Chain B, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With An Atp Analog (Ampcpp).
pdb|3LRT|A Chain A, Crystal Structure Of The Phosphoribosyl Pyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp.
pdb|3LRT|B Chain B, Crystal Structure Of The Phosphoribosyl Pyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp.
pdb|3NAG|A Chain A, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp
pdb|3NAG|B Chain B, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp
Length = 286
Score = 117 bits (293), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 67/223 (30%), Positives = 121/223 (54%), Gaps = 10/223 (4%)
Query: 11 KRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVIPYF 70
+RF DGE+Y++ E + G +++++ T A +ME+++ + A + K++ + PY+
Sbjct: 30 RRFPDGELYLRYDEDLTGHNIFIIGNTHSDAE--VMEMILTLSAIQDYRTKSVNIIAPYY 87
Query: 71 GYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVIL 130
GYAR ++ + E I+++++ I + ++ + D+H +++ Y + ++ I+
Sbjct: 88 GYARQHQRYKNGEPISSQILTE-IYSSYSNSIATVDIHDEKTLSYSKVKFSDLHANDAIV 146
Query: 131 DYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVA-EVMNLIGD 189
Y + V VVSPD GG+AR + KL I KR V +V N+ D
Sbjct: 147 RYYKNVDVD----YVVSPDDGGLARVADISAKLGKKHFFIEKKRIDDRTVEMKVPNV--D 200
Query: 190 VKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHAVF 232
V GK ++VDD+I T GTIAK + LL ++GA ++Y H +F
Sbjct: 201 VNGKKLLIVDDIISTGGTIAKSSGLLREKGASKIYVSAVHGLF 243
>pdb|1U9Y|A Chain A, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
From Methanocaldococcus Jannaschii
pdb|1U9Y|B Chain B, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
From Methanocaldococcus Jannaschii
pdb|1U9Y|C Chain C, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
From Methanocaldococcus Jannaschii
pdb|1U9Y|D Chain D, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
From Methanocaldococcus Jannaschii
pdb|1U9Z|A Chain A, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
Complexed With Amp And Ribose 5-Phosphate
pdb|1U9Z|B Chain B, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
Complexed With Amp And Ribose 5-Phosphate
pdb|1U9Z|C Chain C, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
Complexed With Amp And Ribose 5-Phosphate
pdb|1U9Z|D Chain D, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
Complexed With Amp And Ribose 5-Phosphate
Length = 284
Score = 113 bits (282), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 67/232 (28%), Positives = 120/232 (51%), Gaps = 6/232 (2%)
Query: 1 MGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASA 60
+ +L ++ KRF D EIYV++ + + + ++ T N+ ++E +++ DA R
Sbjct: 20 LNTKLTRVEYKRFPDNEIYVRIVDEINDDEAVIIN-TQKNQNDAIVETILLCDALRDEGV 78
Query: 61 KNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPV 120
K IT V PY YAR D+K E+I+ + +A + + D+++ + H +F IP
Sbjct: 79 KKITLVAPYLAYARQDKKFNPGEAISIRALAKIYSNI-VDKLITINPHETHIKDFFTIPF 137
Query: 121 DHVYCQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNV 180
+ P + +Y+ K ND +V++PD G + A+ A K+ +A ++K R
Sbjct: 138 IYGDAVPKLAEYVKDKL---NDPIVLAPDKGALEFAKT-ASKILNAEYDYLEKTRLSPTE 193
Query: 181 AEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHAVF 232
++ D K + +VDD+I T GT+A LL ++GA+++ A C H V
Sbjct: 194 IQIAPKTLDAKDRDVFIVDDIISTGGTMATAVKLLKEQGAKKIIAACVHPVL 245
>pdb|1VDM|A Chain A, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|B Chain B, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|C Chain C, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|D Chain D, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|E Chain E, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|F Chain F, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|G Chain G, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|H Chain H, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|I Chain I, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|J Chain J, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|K Chain K, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|L Chain L, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
Length = 153
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 6/101 (5%)
Query: 133 LASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRH------GHNVAEVMNL 186
LA K V++ GG+ A + L D PL ++D + + G + +
Sbjct: 18 LAEKLREYKPDVIIGVARGGLIPAVRLSHILGDIPLKVIDVKFYKGIDERGEKPVITIPI 77
Query: 187 IGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACC 227
GD+K K V+VDD+ DT T+ + + GA+E+ C
Sbjct: 78 HGDLKDKRVVIVDDVSDTGKTLEVVIEEVKKLGAKEIKIAC 118
>pdb|3HPV|A Chain A, Crystal Structure Analysis Of The 2,3-dioxygenase Lapb
From Pseudomonas Sp. Kl28
pdb|3HPV|B Chain B, Crystal Structure Analysis Of The 2,3-dioxygenase Lapb
From Pseudomonas Sp. Kl28
pdb|3HPV|C Chain C, Crystal Structure Analysis Of The 2,3-dioxygenase Lapb
From Pseudomonas Sp. Kl28
pdb|3HPV|D Chain D, Crystal Structure Analysis Of The 2,3-dioxygenase Lapb
From Pseudomonas Sp. Kl28
pdb|3HPY|A Chain A, Crystal Structure Analysis Of The 2,3-Dioxygenase Lapb
From Pseudomonas In The Complex With 4-Methylcatechol
pdb|3HPY|B Chain B, Crystal Structure Analysis Of The 2,3-Dioxygenase Lapb
From Pseudomonas In The Complex With 4-Methylcatechol
pdb|3HPY|C Chain C, Crystal Structure Analysis Of The 2,3-Dioxygenase Lapb
From Pseudomonas In The Complex With 4-Methylcatechol
pdb|3HPY|D Chain D, Crystal Structure Analysis Of The 2,3-Dioxygenase Lapb
From Pseudomonas In The Complex With 4-Methylcatechol
pdb|3HQ0|A Chain A, Crystal Structure Analysis Of The 2,3-Dioxygenase Lapb
From Pseudomonas In Complex With A Product
pdb|3HQ0|B Chain B, Crystal Structure Analysis Of The 2,3-Dioxygenase Lapb
From Pseudomonas In Complex With A Product
pdb|3HQ0|C Chain C, Crystal Structure Analysis Of The 2,3-Dioxygenase Lapb
From Pseudomonas In Complex With A Product
pdb|3HQ0|D Chain D, Crystal Structure Analysis Of The 2,3-Dioxygenase Lapb
From Pseudomonas In Complex With A Product
Length = 309
Score = 32.3 bits (72), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 54/129 (41%), Gaps = 17/129 (13%)
Query: 64 TAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHV 123
TA I +FG+ D+ T E + A L A +T R+ A ++ F++P H
Sbjct: 63 TAGIDFFGFKVLDKAT--LEKLDADLQAYGLTTT---RIPAGEMLETGERVRFELPSGH- 116
Query: 124 YCQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEV 183
+++ A KT N + V+P R A P+ + +G N+AEV
Sbjct: 117 -----LIELYAEKTCVGNGISEVNPAPWNAQREHGIA------PIQLDHCLLYGPNIAEV 165
Query: 184 MNLIGDVKG 192
+ +V G
Sbjct: 166 QKIFTEVLG 174
>pdb|3OHP|A Chain A, Crystal Structure Of Hgprt From Vibrio Cholerae
pdb|3OHP|B Chain B, Crystal Structure Of Hgprt From Vibrio Cholerae
pdb|3OHP|C Chain C, Crystal Structure Of Hgprt From Vibrio Cholerae
pdb|3OHP|D Chain D, Crystal Structure Of Hgprt From Vibrio Cholerae
Length = 177
Score = 30.8 bits (68), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 185 NLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACC 227
+L D+KGK ++V+D+IDT T+ K +L + + C
Sbjct: 84 DLDDDIKGKDVLLVEDIIDTGNTLNKVKEILALREPKSIRICT 126
>pdb|1FLG|A Chain A, Crystal Structure Of The Quinoprotein Ethanol
Dehydrogenase From Pseudomonas Aeruginosa
pdb|1FLG|B Chain B, Crystal Structure Of The Quinoprotein Ethanol
Dehydrogenase From Pseudomonas Aeruginosa
Length = 582
Score = 30.4 bits (67), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 31/62 (50%)
Query: 56 RRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGY 115
++ +A N+ + P + Y+ D K +G+ES A + A R+ A D +G+ +
Sbjct: 34 KQVNADNVFKLTPAWSYSFGDEKQRGQESQAIVSDGVIYVTASYSRLFALDAKTGKRLWT 93
Query: 116 FD 117
++
Sbjct: 94 YN 95
>pdb|3E90|B Chain B, West Nile Vi Rus Ns2b-Ns3protease In Complexed With
Inhibitor Naph-Kkr-H
pdb|3E90|D Chain D, West Nile Vi Rus Ns2b-Ns3protease In Complexed With
Inhibitor Naph-Kkr-H
Length = 198
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 7/60 (11%)
Query: 185 NLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYA-------CCTHAVFRLDYK 237
L+G + VMV+ + T KGAAL+ EG + Y C ++L +K
Sbjct: 33 GLLGSYQAGAGVMVEGVFHTLWHTTKGAALMSGEGRLDPYWGSVKEDRLCYGGPWKLQHK 92
>pdb|2GGV|B Chain B, Crystal Structure Of The West Nile Virus Ns2b-Ns3
Protease, His51ala Mutant
Length = 185
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 7/60 (11%)
Query: 185 NLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYA-------CCTHAVFRLDYK 237
L+G + VMV+ + T KGAAL+ EG + Y C ++L +K
Sbjct: 28 GLLGSYQAGAGVMVEGVFHTLWATTKGAALMSGEGRLDPYWGSVKEDRLCYGGPWQLQHK 87
>pdb|2FP7|B Chain B, West Nile Virus Ns2bNS3PROTEASE IN COMPLEX WITH
BZ-Nle-Lys-Arg-Arg-H
Length = 172
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 7/60 (11%)
Query: 185 NLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYA-------CCTHAVFRLDYK 237
L+G + VMV+ + T KGAAL+ EG + Y C ++L +K
Sbjct: 14 GLLGSYQAGAGVMVEGVFHTLWHTTKGAALMSGEGRLDPYWGSVKEDRLCYGGPWKLQHK 73
>pdb|3DEZ|A Chain A, Crystal Structure Of Orotate Phosphoribosyltransferase
From Streptococcus Mutans
pdb|3DEZ|B Chain B, Crystal Structure Of Orotate Phosphoribosyltransferase
From Streptococcus Mutans
Length = 243
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 44/106 (41%), Gaps = 16/106 (15%)
Query: 128 VILDYLASKTVSSNDLV------------VVSPDVGGVARARAFAKKLSDAPLAIVDKRR 175
+ L Y ++T+ N V + G+ A K+ + PLA + +
Sbjct: 75 ITLSYPETRTLIENGFVETIKEAFPEVEVIAGTATAGIPHGAIIADKM-NLPLAYIRSKP 133
Query: 176 HGHNVAEVMNLIGDV-KGKVAVMVDDMIDTAGTIAKGAALLHQEGA 220
H + G V KG+ V+++D+I T G++ A +EGA
Sbjct: 134 KDHGAGNQIE--GRVTKGQKMVIIEDLISTGGSVLDAVAAAQREGA 177
>pdb|1J7J|A Chain A, Crystal Structure Of The Hprt From Salmonella Typhimurium
pdb|1J7J|B Chain B, Crystal Structure Of The Hprt From Salmonella Typhimurium
Length = 178
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Query: 178 HNVAEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGARE--VYACCT 228
+V + +L D++GK ++V+D+ID+ T++K +L G RE A CT
Sbjct: 78 RDVKILKDLDEDIRGKDVLIVEDIIDSGNTLSKVREIL---GLREPKSLAICT 127
>pdb|2IJO|B Chain B, Crystal Structure Of The West Nile Virus Ns2b-Ns3 Protease
Complexed With Bovine Pancreatic Trypsin Inhibitor
Length = 192
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 7/60 (11%)
Query: 185 NLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYA-------CCTHAVFRLDYK 237
L+G + VMV+ + T KGAAL+ EG + Y C ++L +K
Sbjct: 29 GLLGSYQAGAGVMVEGVFHTLWHTTKGAALMSGEGRLDPYWGSVKEDRLCYGGPWQLQHK 88
>pdb|1G9S|A Chain A, Crystal Structure Of A Complex Between E.Coli Hprt And Imp
pdb|1G9S|B Chain B, Crystal Structure Of A Complex Between E.Coli Hprt And Imp
pdb|1G9T|A Chain A, Crystal Structure Of E.Coli Hprt-Gmp Complex
pdb|1G9T|B Chain B, Crystal Structure Of E.Coli Hprt-Gmp Complex
pdb|1GRV|A Chain A, Hypoxanthine Phosphoribosyltransferase From E. Coli
pdb|1GRV|B Chain B, Hypoxanthine Phosphoribosyltransferase From E. Coli
Length = 182
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 185 NLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCT 228
+L D++GK ++V+D+ID+ T++K +L + + A CT
Sbjct: 89 DLDEDIRGKDVLIVEDIIDSGNTLSKVREILSLREPKSL-AICT 131
>pdb|3M3H|A Chain A, 1.75 Angstrom Resolution Crystal Structure Of An Orotate
Phosphoribosyltransferase From Bacillus Anthracis Str.
'ames Ancestor'
pdb|3OSC|A Chain A, 2.65 Angstrom Resolution Crystal Structure Of An Orotate
Phosphoribosyltransferase From Bacillus Anthracis Str.
'ames Ancestor' In Complex With
5-Phospho-Alpha-D-Ribosyl Diphosphate (Prpp)
pdb|3OSC|B Chain B, 2.65 Angstrom Resolution Crystal Structure Of An Orotate
Phosphoribosyltransferase From Bacillus Anthracis Str.
'ames Ancestor' In Complex With
5-Phospho-Alpha-D-Ribosyl Diphosphate (Prpp)
pdb|3OSC|C Chain C, 2.65 Angstrom Resolution Crystal Structure Of An Orotate
Phosphoribosyltransferase From Bacillus Anthracis Str.
'ames Ancestor' In Complex With
5-Phospho-Alpha-D-Ribosyl Diphosphate (Prpp)
Length = 234
Score = 27.7 bits (60), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 144 VVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMID 203
V+ G+A A + ++ D P+ V + GH + + KG+ V+V+D+I
Sbjct: 91 VIAGTATAGIAHAAWVSDRM-DLPMCYVRSKAKGHGKGNQIEGKAE-KGQKVVVVEDLIS 148
Query: 204 TAGT 207
T G+
Sbjct: 149 TGGS 152
>pdb|1AO0|A Chain A, Glutamine Phosphoribosylpyrophosphate (Prpp)
Amidotransferase From B. Subtilis Complexed With Adp And
Gmp
pdb|1AO0|B Chain B, Glutamine Phosphoribosylpyrophosphate (Prpp)
Amidotransferase From B. Subtilis Complexed With Adp And
Gmp
pdb|1AO0|C Chain C, Glutamine Phosphoribosylpyrophosphate (Prpp)
Amidotransferase From B. Subtilis Complexed With Adp And
Gmp
pdb|1AO0|D Chain D, Glutamine Phosphoribosylpyrophosphate (Prpp)
Amidotransferase From B. Subtilis Complexed With Adp And
Gmp
Length = 459
Score = 27.7 bits (60), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 188 GDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVY 224
G V+GK VMVDD I T + +L + GA EV+
Sbjct: 334 GVVEGKRVVMVDDSIVRGTTSRRIVTMLREAGATEVH 370
>pdb|1GPH|1 Chain 1, Structure Of The Allosteric Regulatory Enzyme Of Purine
Biosynthesis
pdb|1GPH|2 Chain 2, Structure Of The Allosteric Regulatory Enzyme Of Purine
Biosynthesis
pdb|1GPH|3 Chain 3, Structure Of The Allosteric Regulatory Enzyme Of Purine
Biosynthesis
pdb|1GPH|4 Chain 4, Structure Of The Allosteric Regulatory Enzyme Of Purine
Biosynthesis
Length = 465
Score = 27.7 bits (60), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 188 GDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVY 224
G V+GK VMVDD I T + +L + GA EV+
Sbjct: 334 GVVEGKRVVMVDDSIVRGTTSRRIVTMLREAGATEVH 370
>pdb|1CJB|A Chain A, Malarial Purine Phosphoribosyltransferase
pdb|1CJB|B Chain B, Malarial Purine Phosphoribosyltransferase
pdb|1CJB|C Chain C, Malarial Purine Phosphoribosyltransferase
pdb|1CJB|D Chain D, Malarial Purine Phosphoribosyltransferase
Length = 231
Score = 26.9 bits (58), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 190 VKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACC 227
+KGK ++V+D+IDT T+ K L + + V C
Sbjct: 135 LKGKHVLIVEDIIDTGKTLVKFCEYLKKFEIKTVAIAC 172
>pdb|3OZF|A Chain A, Crystal Structure Of Plasmodium Falciparum
Hypoxanthine-Guanine- Xanthine Phosphoribosyltransferase
In Complex With Hypoxanthine
pdb|3OZF|B Chain B, Crystal Structure Of Plasmodium Falciparum
Hypoxanthine-Guanine- Xanthine Phosphoribosyltransferase
In Complex With Hypoxanthine
pdb|3OZF|C Chain C, Crystal Structure Of Plasmodium Falciparum
Hypoxanthine-Guanine- Xanthine Phosphoribosyltransferase
In Complex With Hypoxanthine
pdb|3OZF|D Chain D, Crystal Structure Of Plasmodium Falciparum
Hypoxanthine-Guanine- Xanthine Phosphoribosyltransferase
In Complex With Hypoxanthine
pdb|3OZG|A Chain A, Crystal Structure Of Plasmodium Falciparum
Hypoxanthine-Guanine- Xanthine Phosphoribosyltransferase
In Complex With S-Serme-Immh Phosphonate
pdb|3OZG|B Chain B, Crystal Structure Of Plasmodium Falciparum
Hypoxanthine-Guanine- Xanthine Phosphoribosyltransferase
In Complex With S-Serme-Immh Phosphonate
pdb|3OZG|C Chain C, Crystal Structure Of Plasmodium Falciparum
Hypoxanthine-Guanine- Xanthine Phosphoribosyltransferase
In Complex With S-Serme-Immh Phosphonate
pdb|3OZG|D Chain D, Crystal Structure Of Plasmodium Falciparum
Hypoxanthine-Guanine- Xanthine Phosphoribosyltransferase
In Complex With S-Serme-Immh Phosphonate
Length = 250
Score = 26.9 bits (58), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 190 VKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACC 227
+KGK ++V+D+IDT T+ K L + + V C
Sbjct: 154 LKGKHVLIVEDIIDTGKTLVKFCEYLKKFEIKTVAIAC 191
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,394,192
Number of Sequences: 62578
Number of extensions: 234129
Number of successful extensions: 684
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 636
Number of HSP's gapped (non-prelim): 40
length of query: 238
length of database: 14,973,337
effective HSP length: 96
effective length of query: 142
effective length of database: 8,965,849
effective search space: 1273150558
effective search space used: 1273150558
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)