Query 026473
Match_columns 238
No_of_seqs 262 out of 2342
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 08:26:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026473.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026473hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0462 PrsA Phosphoribosylpyr 100.0 5.2E-80 1.1E-84 535.7 26.2 234 1-236 24-258 (314)
2 PRK04923 ribose-phosphate pyro 100.0 6.8E-71 1.5E-75 487.9 27.3 235 1-236 26-261 (319)
3 PRK02269 ribose-phosphate pyro 100.0 1.2E-70 2.6E-75 487.3 27.0 235 1-236 25-261 (320)
4 PRK03092 ribose-phosphate pyro 100.0 2.5E-70 5.5E-75 482.2 27.5 235 1-236 9-245 (304)
5 PRK00553 ribose-phosphate pyro 100.0 3E-70 6.6E-75 486.1 28.0 234 1-236 29-262 (332)
6 PRK02458 ribose-phosphate pyro 100.0 1.3E-69 2.9E-74 480.7 27.1 234 1-236 29-262 (323)
7 PTZ00145 phosphoribosylpyropho 100.0 1.1E-69 2.4E-74 492.0 26.7 234 1-236 139-379 (439)
8 PRK02812 ribose-phosphate pyro 100.0 9.8E-69 2.1E-73 475.8 27.7 234 1-236 41-274 (330)
9 PRK07199 phosphoribosylpyropho 100.0 1.4E-68 2.9E-73 470.7 27.4 230 1-236 22-255 (301)
10 PLN02369 ribose-phosphate pyro 100.0 2.5E-68 5.4E-73 469.2 27.6 235 1-235 11-245 (302)
11 KOG1448 Ribose-phosphate pyrop 100.0 1.5E-68 3.3E-73 454.9 18.8 235 1-236 23-258 (316)
12 PRK01259 ribose-phosphate pyro 100.0 5.3E-67 1.2E-71 462.3 27.3 233 1-236 20-252 (309)
13 PRK00934 ribose-phosphate pyro 100.0 8E-66 1.7E-70 450.7 27.4 230 1-236 19-248 (285)
14 PRK06827 phosphoribosylpyropho 100.0 1.5E-65 3.3E-70 461.4 26.9 229 3-234 52-306 (382)
15 PLN02297 ribose-phosphate pyro 100.0 6.3E-65 1.4E-69 448.9 26.4 228 2-236 38-274 (326)
16 TIGR01251 ribP_PPkin ribose-ph 100.0 1.3E-64 2.9E-69 447.6 28.2 233 1-236 20-254 (308)
17 KOG1503 Phosphoribosylpyrophos 100.0 6.5E-51 1.4E-55 337.7 20.2 234 1-236 28-291 (354)
18 PF13793 Pribosyltran_N: N-ter 100.0 2.7E-37 6E-42 236.0 11.3 97 1-98 20-116 (116)
19 PF14572 Pribosyl_synth: Phosp 99.9 3.5E-24 7.5E-29 174.2 8.8 96 140-236 2-127 (184)
20 PRK13811 orotate phosphoribosy 99.9 1.5E-20 3.3E-25 153.1 13.7 136 88-227 3-139 (170)
21 PRK13812 orotate phosphoribosy 99.7 7E-17 1.5E-21 132.2 12.4 135 86-227 2-142 (176)
22 PRK13809 orotate phosphoribosy 99.7 1.1E-15 2.5E-20 127.8 14.2 138 88-228 11-154 (206)
23 TIGR01203 HGPRTase hypoxanthin 99.7 6.3E-16 1.4E-20 125.5 11.3 103 125-229 11-121 (166)
24 PRK09162 hypoxanthine-guanine 99.7 1.5E-15 3.2E-20 125.0 12.3 103 125-229 25-134 (181)
25 PRK15423 hypoxanthine phosphor 99.7 2.8E-15 6.1E-20 122.9 13.5 103 125-228 17-128 (178)
26 PLN02293 adenine phosphoribosy 99.6 6E-15 1.3E-19 121.8 13.8 93 141-234 62-167 (187)
27 COG0634 Hpt Hypoxanthine-guani 99.6 5.9E-15 1.3E-19 118.5 12.8 101 125-227 20-128 (178)
28 PF00156 Pribosyltran: Phospho 99.6 8.1E-15 1.8E-19 112.5 12.1 102 125-229 13-125 (125)
29 TIGR01367 pyrE_Therm orotate p 99.6 2.4E-14 5.1E-19 118.4 15.5 131 90-228 2-141 (187)
30 PRK07322 adenine phosphoribosy 99.6 1.8E-14 3.8E-19 118.3 13.1 116 111-227 19-155 (178)
31 PRK08525 amidophosphoribosyltr 99.6 9.6E-15 2.1E-19 135.3 12.4 107 128-236 263-384 (445)
32 PRK02304 adenine phosphoribosy 99.6 3.3E-14 7.1E-19 116.3 13.1 109 122-231 28-153 (175)
33 PLN02238 hypoxanthine phosphor 99.6 3.4E-14 7.3E-19 117.6 13.2 101 125-227 20-132 (189)
34 PRK05205 bifunctional pyrimidi 99.6 3.4E-14 7.5E-19 116.3 12.4 105 125-229 15-133 (176)
35 PRK13810 orotate phosphoribosy 99.6 7.9E-14 1.7E-18 115.1 14.1 137 86-227 15-157 (187)
36 PRK00455 pyrE orotate phosphor 99.6 5.9E-14 1.3E-18 117.4 13.0 139 86-229 4-150 (202)
37 TIGR01090 apt adenine phosphor 99.5 1.7E-13 3.7E-18 111.4 12.4 99 129-228 34-145 (169)
38 PRK12560 adenine phosphoribosy 99.5 1.4E-13 3.1E-18 113.7 11.9 122 101-227 11-149 (187)
39 TIGR00336 pyrE orotate phospho 99.5 1.3E-13 2.7E-18 112.7 11.3 84 141-227 54-143 (173)
40 PTZ00271 hypoxanthine-guanine 99.5 2.8E-13 6E-18 113.6 13.4 103 125-227 36-153 (211)
41 PRK02277 orotate phosphoribosy 99.5 2.7E-13 5.8E-18 113.3 12.0 87 141-228 85-176 (200)
42 PRK05793 amidophosphoribosyltr 99.5 2.3E-13 5.1E-18 126.8 12.5 107 127-235 275-396 (469)
43 PRK00129 upp uracil phosphorib 99.5 3.2E-13 6.9E-18 113.5 12.1 88 141-228 70-160 (209)
44 PTZ00149 hypoxanthine phosphor 99.5 4.6E-13 1E-17 114.2 12.7 103 125-228 66-186 (241)
45 PRK05500 bifunctional orotidin 99.5 1.4E-12 3.1E-17 121.2 16.1 173 42-227 248-428 (477)
46 COG0461 PyrE Orotate phosphori 99.5 2.1E-12 4.5E-17 107.0 14.5 136 88-227 4-147 (201)
47 TIGR01744 XPRTase xanthine pho 99.4 2.6E-12 5.7E-17 106.4 13.5 100 127-227 36-152 (191)
48 TIGR01091 upp uracil phosphori 99.4 2E-12 4.3E-17 108.6 12.6 88 141-228 68-158 (207)
49 PRK09219 xanthine phosphoribos 99.4 3.6E-12 7.9E-17 105.4 12.7 98 129-227 38-152 (189)
50 PRK11595 DNA utilization prote 99.4 1.5E-13 3.3E-18 116.9 3.9 145 62-227 63-222 (227)
51 PRK08558 adenine phosphoribosy 99.4 7.3E-12 1.6E-16 107.2 12.8 99 128-227 98-211 (238)
52 COG0503 Apt Adenine/guanine ph 99.3 1.7E-11 3.8E-16 100.6 11.9 95 132-227 44-151 (179)
53 PRK09123 amidophosphoribosyltr 99.3 1.9E-11 4.2E-16 114.2 13.3 105 127-234 282-407 (479)
54 TIGR01743 purR_Bsub pur operon 99.3 3.8E-11 8.2E-16 104.0 12.7 162 48-227 42-229 (268)
55 COG0856 Orotate phosphoribosyl 99.3 2.6E-11 5.6E-16 97.0 10.6 99 127-227 73-176 (203)
56 PRK06031 phosphoribosyltransfe 99.3 5.3E-11 1.1E-15 101.5 13.2 100 127-227 70-189 (233)
57 TIGR00201 comF comF family pro 99.3 7.4E-11 1.6E-15 97.7 12.7 121 83-228 57-188 (190)
58 PLN02440 amidophosphoribosyltr 99.3 5.3E-11 1.1E-15 111.4 12.3 101 126-229 261-377 (479)
59 COG1040 ComFC Predicted amidop 99.3 1.6E-11 3.4E-16 104.3 7.7 143 62-228 67-220 (225)
60 PRK09213 pur operon repressor; 99.3 8.8E-11 1.9E-15 101.9 12.4 98 129-227 118-231 (271)
61 PRK08341 amidophosphoribosyltr 99.2 5.2E-11 1.1E-15 110.2 10.7 102 127-230 258-372 (442)
62 PRK07272 amidophosphoribosyltr 99.2 7.6E-11 1.6E-15 110.1 11.4 106 127-234 272-392 (484)
63 PRK09177 xanthine-guanine phos 99.2 1.3E-10 2.9E-15 93.3 11.3 87 126-217 19-109 (156)
64 COG1926 Predicted phosphoribos 99.2 2.2E-10 4.7E-15 94.6 10.8 104 122-227 7-159 (220)
65 COG2236 Predicted phosphoribos 99.2 1.4E-10 3E-15 95.7 9.3 100 125-226 15-121 (192)
66 PRK09246 amidophosphoribosyltr 99.2 2.2E-10 4.8E-15 107.8 11.6 101 127-228 279-394 (501)
67 PRK07349 amidophosphoribosyltr 99.1 9.8E-10 2.1E-14 103.0 11.9 101 126-228 298-413 (500)
68 TIGR01134 purF amidophosphorib 99.1 8.9E-10 1.9E-14 102.3 11.2 101 126-228 259-374 (442)
69 KOG3367 Hypoxanthine-guanine p 99.1 8.6E-10 1.9E-14 88.1 8.5 101 126-227 46-160 (216)
70 PRK06781 amidophosphoribosyltr 99.0 1.4E-09 3.1E-14 101.4 11.4 102 127-230 270-386 (471)
71 KOG1712 Adenine phosphoribosyl 99.0 2.2E-09 4.7E-14 85.0 9.4 101 127-229 46-159 (183)
72 PRK07631 amidophosphoribosyltr 99.0 2.4E-09 5.2E-14 99.9 11.0 103 126-230 269-386 (475)
73 COG2065 PyrR Pyrimidine operon 99.0 8.4E-09 1.8E-13 82.0 10.9 102 126-227 16-132 (179)
74 PRK06388 amidophosphoribosyltr 98.9 7.7E-09 1.7E-13 96.6 10.9 102 127-230 278-394 (474)
75 PRK07847 amidophosphoribosyltr 98.9 1.6E-08 3.5E-13 95.1 11.0 102 127-230 289-405 (510)
76 COG0035 Upp Uracil phosphoribo 98.8 5.1E-08 1.1E-12 81.0 10.2 88 141-228 70-161 (210)
77 PF14681 UPRTase: Uracil phosp 98.7 1.4E-07 3.1E-12 79.2 11.7 88 141-228 67-159 (207)
78 PLN02541 uracil phosphoribosyl 98.7 1.9E-07 4.1E-12 80.1 11.4 86 142-227 103-194 (244)
79 COG0034 PurF Glutamine phospho 98.6 1.2E-07 2.6E-12 86.6 7.6 102 126-229 269-385 (470)
80 TIGR01251 ribP_PPkin ribose-ph 98.1 3.8E-05 8.2E-10 68.3 11.9 116 1-137 181-298 (308)
81 KOG0572 Glutamine phosphoribos 98.1 6.9E-06 1.5E-10 73.6 6.8 87 142-229 292-393 (474)
82 PF15609 PRTase_2: Phosphoribo 97.3 0.0018 3.8E-08 53.4 9.0 103 123-228 37-157 (191)
83 PF13793 Pribosyltran_N: N-ter 97.3 0.0088 1.9E-07 45.6 12.0 84 145-230 2-89 (116)
84 PRK02812 ribose-phosphate pyro 96.4 0.069 1.5E-06 48.0 12.3 85 144-230 22-110 (330)
85 PRK00553 ribose-phosphate pyro 96.3 0.086 1.9E-06 47.5 12.4 85 144-230 10-98 (332)
86 PTZ00145 phosphoribosylpyropho 96.3 0.074 1.6E-06 49.5 12.1 87 141-230 118-208 (439)
87 PRK02269 ribose-phosphate pyro 96.1 0.11 2.4E-06 46.5 12.2 87 141-230 4-94 (320)
88 PRK04923 ribose-phosphate pyro 96.1 0.14 3.1E-06 45.8 12.4 85 144-230 7-95 (319)
89 PRK07199 phosphoribosylpyropho 96.1 0.13 2.8E-06 45.7 12.1 83 147-231 6-91 (301)
90 PRK00934 ribose-phosphate pyro 95.8 0.19 4E-06 44.3 11.7 80 149-230 5-87 (285)
91 PRK01259 ribose-phosphate pyro 95.7 0.19 4E-06 44.8 11.8 80 149-230 6-89 (309)
92 PRK02458 ribose-phosphate pyro 95.6 0.32 6.9E-06 43.6 12.8 85 144-230 10-98 (323)
93 PLN02369 ribose-phosphate pyro 95.5 0.16 3.5E-06 45.1 10.3 75 154-230 2-80 (302)
94 PRK06827 phosphoribosylpyropho 95.4 0.36 7.9E-06 44.3 12.7 88 142-232 8-134 (382)
95 COG0462 PrsA Phosphoribosylpyr 95.4 0.25 5.4E-06 44.0 11.1 79 150-230 11-93 (314)
96 PLN02297 ribose-phosphate pyro 95.3 0.39 8.5E-06 43.1 12.3 86 143-230 16-106 (326)
97 PRK03092 ribose-phosphate pyro 94.9 0.28 6.1E-06 43.6 10.1 73 156-230 2-78 (304)
98 KOG1017 Predicted uracil phosp 94.5 0.069 1.5E-06 44.3 4.8 37 185-221 182-218 (267)
99 PF14572 Pribosyl_synth: Phosp 93.9 0.21 4.5E-06 41.1 6.4 97 20-136 75-173 (184)
100 PF15610 PRTase_3: PRTase ComF 89.3 0.53 1.2E-05 40.9 4.1 38 189-226 135-172 (274)
101 COG2179 Predicted hydrolase of 86.9 13 0.00029 30.2 10.5 113 91-213 20-152 (175)
102 TIGR02990 ectoine_eutA ectoine 85.1 6.8 0.00015 33.6 8.6 99 50-168 110-209 (239)
103 PF01488 Shikimate_DH: Shikima 80.2 5.1 0.00011 30.9 5.5 36 188-227 8-43 (135)
104 PLN02501 digalactosyldiacylgly 78.0 16 0.00036 36.4 9.3 130 28-164 322-460 (794)
105 TIGR01091 upp uracil phosphori 73.9 8.1 0.00018 32.2 5.4 47 18-68 112-158 (207)
106 COG0634 Hpt Hypoxanthine-guani 72.7 22 0.00048 29.1 7.4 61 3-67 61-128 (178)
107 PRK00129 upp uracil phosphorib 70.0 12 0.00027 31.1 5.7 47 18-68 114-160 (209)
108 PRK09162 hypoxanthine-guanine 67.8 20 0.00043 29.2 6.3 42 24-69 93-134 (181)
109 smart00450 RHOD Rhodanese Homo 67.3 12 0.00027 25.8 4.5 34 190-226 54-87 (100)
110 PRK09123 amidophosphoribosyltr 66.5 23 0.00051 33.6 7.3 73 25-104 357-437 (479)
111 PRK15423 hypoxanthine phosphor 66.5 48 0.001 27.0 8.3 61 5-69 62-129 (178)
112 TIGR01203 HGPRTase hypoxanthin 64.9 33 0.00072 27.4 7.0 61 5-69 54-121 (166)
113 PF06300 Tsp45I: Tsp45I type I 64.7 1 2.2E-05 38.3 -2.0 60 67-136 70-130 (261)
114 cd00158 RHOD Rhodanese Homolog 64.1 16 0.00035 24.8 4.5 34 190-226 48-81 (89)
115 cd01529 4RHOD_Repeats Member o 63.9 15 0.00032 26.0 4.4 33 191-226 55-87 (96)
116 PLN02440 amidophosphoribosyltr 63.0 29 0.00063 32.9 7.2 76 24-106 336-419 (479)
117 cd01444 GlpE_ST GlpE sulfurtra 61.9 15 0.00032 25.8 4.0 31 191-224 55-85 (96)
118 PRK07272 amidophosphoribosyltr 61.6 32 0.00069 32.7 7.2 78 23-107 345-430 (484)
119 COG3473 Maleate cis-trans isom 61.2 99 0.0021 26.3 9.1 98 50-168 108-207 (238)
120 PTZ00271 hypoxanthine-guanine 60.8 43 0.00092 28.2 7.1 61 4-68 87-154 (211)
121 PLN02238 hypoxanthine phosphor 59.0 50 0.0011 27.1 7.2 60 6-69 67-134 (189)
122 KOG0814 Glyoxylase [General fu 58.8 9.6 0.00021 31.4 2.7 44 184-230 23-66 (237)
123 PF06574 FAD_syn: FAD syntheta 58.2 18 0.00039 28.8 4.3 77 84-172 61-144 (157)
124 cd01523 RHOD_Lact_B Member of 57.0 20 0.00044 25.5 4.1 28 191-221 60-87 (100)
125 PF00156 Pribosyltran: Phospho 56.4 35 0.00076 25.1 5.5 45 20-68 80-124 (125)
126 TIGR01809 Shik-DH-AROM shikima 55.8 26 0.00056 30.6 5.2 35 189-227 122-156 (282)
127 PRK05205 bifunctional pyrimidi 55.7 51 0.0011 26.5 6.6 62 4-69 62-133 (176)
128 KOG4203 Armadillo/beta-Catenin 55.5 24 0.00053 33.4 5.3 77 144-221 336-415 (473)
129 PLN02962 hydroxyacylglutathion 54.7 21 0.00044 30.8 4.4 40 190-232 33-72 (251)
130 cd01528 RHOD_2 Member of the R 53.9 28 0.00062 24.8 4.5 33 191-226 57-89 (101)
131 cd01518 RHOD_YceA Member of th 53.6 30 0.00064 24.7 4.5 32 191-225 60-91 (101)
132 cd01532 4RHOD_Repeat_1 Member 53.0 24 0.00051 24.9 3.8 32 191-225 49-82 (92)
133 cd01519 RHOD_HSP67B2 Member of 52.9 27 0.00058 25.0 4.2 33 191-226 65-97 (106)
134 PF01012 ETF: Electron transfe 52.7 1.1E+02 0.0024 23.9 8.7 105 41-168 13-117 (164)
135 COG0034 PurF Glutamine phospho 51.4 28 0.0006 32.8 4.8 40 24-67 344-383 (470)
136 PRK13811 orotate phosphoribosy 51.3 68 0.0015 25.8 6.7 64 2-71 79-142 (170)
137 PF14681 UPRTase: Uracil phosp 51.2 77 0.0017 26.3 7.2 60 3-66 92-157 (207)
138 COG2185 Sbm Methylmalonyl-CoA 51.0 44 0.00096 26.4 5.3 33 29-64 64-96 (143)
139 KOG1448 Ribose-phosphate pyrop 50.0 69 0.0015 28.5 6.8 72 154-227 14-89 (316)
140 cd01527 RHOD_YgaP Member of th 47.7 33 0.00072 24.2 4.0 31 191-224 53-83 (99)
141 cd01524 RHOD_Pyr_redox Member 47.4 41 0.00089 23.4 4.3 30 192-225 51-80 (90)
142 PF02633 Creatininase: Creatin 46.3 84 0.0018 26.5 6.8 81 42-136 37-126 (237)
143 PRK00676 hemA glutamyl-tRNA re 45.9 47 0.001 30.0 5.4 36 188-227 170-205 (338)
144 KOG1503 Phosphoribosylpyrophos 45.6 2E+02 0.0044 24.9 9.5 79 153-233 18-100 (354)
145 COG2820 Udp Uridine phosphoryl 45.5 1.5E+02 0.0033 25.5 8.0 79 149-236 22-100 (248)
146 PLN02160 thiosulfate sulfurtra 44.9 39 0.00085 26.0 4.2 33 191-226 80-112 (136)
147 PRK02304 adenine phosphoribosy 44.3 1.1E+02 0.0023 24.6 6.8 52 16-72 100-153 (175)
148 PTZ00149 hypoxanthine phosphor 43.6 94 0.002 26.7 6.6 60 6-69 122-187 (241)
149 PF02006 DUF137: Protein of un 43.5 60 0.0013 26.5 5.0 83 50-135 48-149 (178)
150 cd04814 PA_M28_1 PA_M28_1: Pro 43.3 58 0.0013 25.6 4.9 40 189-228 45-98 (142)
151 cd04820 PA_M28_1_1 PA_M28_1_1: 43.2 57 0.0012 25.5 4.8 39 189-227 47-93 (137)
152 TIGR01134 purF amidophosphorib 43.1 1.1E+02 0.0023 28.8 7.5 41 24-68 334-374 (442)
153 cd01525 RHOD_Kc Member of the 42.9 48 0.001 23.5 4.2 32 191-225 64-95 (105)
154 TIGR02981 phageshock_pspE phag 42.7 62 0.0013 23.6 4.8 32 191-225 57-88 (101)
155 PRK00455 pyrE orotate phosphor 42.5 1.2E+02 0.0025 25.0 6.9 38 25-66 110-147 (202)
156 PF04914 DltD_C: DltD C-termin 42.4 1.3E+02 0.0028 23.2 6.7 73 43-124 33-112 (130)
157 TIGR01367 pyrE_Therm orotate p 42.3 1.3E+02 0.0029 24.5 7.2 46 16-65 92-138 (187)
158 cd01533 4RHOD_Repeat_2 Member 42.2 53 0.0012 23.7 4.4 31 191-224 65-96 (109)
159 cd01447 Polysulfide_ST Polysul 42.0 30 0.00066 24.4 3.0 32 191-225 60-91 (103)
160 PRK05320 rhodanese superfamily 41.7 52 0.0011 28.4 4.8 32 190-224 173-204 (257)
161 COG0169 AroE Shikimate 5-dehyd 40.6 65 0.0014 28.4 5.3 35 189-227 123-157 (283)
162 PLN02469 hydroxyacylglutathion 39.9 46 0.001 28.7 4.3 38 189-231 19-56 (258)
163 PRK00258 aroE shikimate 5-dehy 39.8 74 0.0016 27.6 5.6 36 189-228 120-155 (278)
164 cd01080 NAD_bind_m-THF_DH_Cycl 39.5 76 0.0016 25.5 5.2 35 188-227 40-75 (168)
165 PRK11070 ssDNA exonuclease Rec 38.5 1.9E+02 0.0041 28.2 8.5 39 27-68 68-106 (575)
166 cd01449 TST_Repeat_2 Thiosulfa 38.4 61 0.0013 23.5 4.3 33 191-226 77-109 (118)
167 PRK13671 hypothetical protein; 38.3 2E+02 0.0044 25.5 8.1 67 33-107 5-71 (298)
168 cd01534 4RHOD_Repeat_3 Member 38.2 65 0.0014 22.6 4.2 30 191-224 55-84 (95)
169 TIGR01090 apt adenine phosphor 38.1 1.3E+02 0.0028 23.9 6.4 38 25-66 106-143 (169)
170 PRK10287 thiosulfate:cyanide s 37.7 85 0.0018 23.0 4.9 32 191-225 59-90 (104)
171 cd01526 RHOD_ThiF Member of th 37.7 51 0.0011 24.5 3.7 33 191-226 71-104 (122)
172 COG1926 Predicted phosphoribos 37.4 78 0.0017 26.8 5.0 64 25-109 121-184 (220)
173 PRK08525 amidophosphoribosyltr 36.8 78 0.0017 29.7 5.5 46 24-73 336-381 (445)
174 PRK14027 quinate/shikimate deh 36.4 70 0.0015 28.0 4.9 35 189-227 124-158 (283)
175 PF05728 UPF0227: Uncharacteri 36.1 2.4E+02 0.0052 23.0 8.1 75 82-171 12-87 (187)
176 PRK13940 glutamyl-tRNA reducta 35.8 68 0.0015 29.8 4.9 37 187-227 176-212 (414)
177 PRK12749 quinate/shikimate deh 34.9 84 0.0018 27.6 5.2 35 189-227 121-155 (288)
178 PRK12548 shikimate 5-dehydroge 34.6 1E+02 0.0022 27.0 5.6 35 189-227 123-157 (289)
179 cd01522 RHOD_1 Member of the R 34.4 74 0.0016 23.5 4.2 33 191-226 63-95 (117)
180 PRK13812 orotate phosphoribosy 34.3 1.6E+02 0.0036 23.7 6.4 58 2-64 81-139 (176)
181 PF10662 PduV-EutP: Ethanolami 33.7 56 0.0012 25.8 3.4 29 200-228 100-128 (143)
182 PF14502 HTH_41: Helix-turn-he 33.6 46 0.001 21.2 2.4 21 204-224 19-39 (48)
183 COG1134 TagH ABC-type polysacc 33.2 53 0.0011 28.4 3.5 38 193-230 166-206 (249)
184 TIGR03581 EF_0839 conserved hy 33.1 46 0.00099 28.3 3.0 26 206-231 135-160 (236)
185 PRK02277 orotate phosphoribosy 33.0 1.6E+02 0.0034 24.3 6.3 40 24-67 136-175 (200)
186 PRK00162 glpE thiosulfate sulf 32.9 61 0.0013 23.4 3.4 30 192-224 58-87 (108)
187 PF02875 Mur_ligase_C: Mur lig 32.8 77 0.0017 22.2 3.8 34 194-227 13-47 (91)
188 smart00166 UBX Domain present 32.8 99 0.0021 21.3 4.3 29 41-69 23-51 (80)
189 PF07931 CPT: Chloramphenicol 32.7 45 0.00096 27.1 2.8 23 194-216 84-107 (174)
190 TIGR00336 pyrE orotate phospho 32.4 1.5E+02 0.0033 23.7 6.0 51 16-71 96-146 (173)
191 KOG1643 Triosephosphate isomer 32.0 17 0.00036 30.6 0.2 45 67-113 44-99 (247)
192 PRK04194 hypothetical protein; 31.8 4.2E+02 0.0091 24.5 13.0 124 93-226 137-281 (392)
193 PRK05793 amidophosphoribosyltr 30.9 93 0.002 29.4 5.0 44 24-71 349-392 (469)
194 cd01715 ETF_alpha The electron 30.8 1.8E+02 0.0039 22.9 6.1 67 91-168 44-110 (168)
195 COG2072 TrkA Predicted flavopr 30.5 85 0.0018 29.3 4.7 41 188-233 171-211 (443)
196 cd03412 CbiK_N Anaerobic cobal 30.4 64 0.0014 24.5 3.3 28 206-234 56-83 (127)
197 PRK14453 chloramphenicol/florf 30.2 3.3E+02 0.0072 24.6 8.3 61 39-100 257-321 (347)
198 TIGR03413 GSH_gloB hydroxyacyl 30.0 72 0.0016 27.1 3.9 33 193-230 20-52 (248)
199 PRK11194 ribosomal RNA large s 29.9 2.8E+02 0.0062 25.4 7.9 68 29-100 261-328 (372)
200 PRK02122 glucosamine-6-phospha 29.9 78 0.0017 31.3 4.5 38 190-231 367-409 (652)
201 cd01714 ETF_beta The electron 29.6 2.8E+02 0.006 22.8 7.2 68 90-168 68-138 (202)
202 PRK10241 hydroxyacylglutathion 29.3 61 0.0013 27.7 3.3 33 193-230 22-54 (251)
203 PF13738 Pyr_redox_3: Pyridine 28.8 87 0.0019 24.9 4.0 37 189-230 164-200 (203)
204 PF11382 DUF3186: Protein of u 28.7 1.5E+02 0.0032 26.4 5.7 43 186-228 77-119 (308)
205 PLN02293 adenine phosphoribosy 28.5 3.1E+02 0.0068 22.4 7.2 38 25-66 121-159 (187)
206 PRK14463 ribosomal RNA large s 28.2 3.1E+02 0.0067 24.8 7.8 59 41-103 261-319 (349)
207 PRK14462 ribosomal RNA large s 28.2 3.2E+02 0.0069 24.9 7.8 31 41-73 274-304 (356)
208 TIGR01697 PNPH-PUNA-XAPA inosi 28.1 1.1E+02 0.0025 26.0 4.7 51 187-237 45-100 (248)
209 PRK13374 purine nucleoside pho 27.9 3.7E+02 0.008 22.6 9.1 84 142-236 15-99 (233)
210 TIGR03865 PQQ_CXXCW PQQ-depend 27.9 1.2E+02 0.0025 24.1 4.5 33 191-226 115-148 (162)
211 COG0031 CysK Cysteine synthase 27.8 72 0.0016 28.4 3.5 27 202-229 177-203 (300)
212 PRK11595 DNA utilization prote 27.5 1.2E+02 0.0026 25.5 4.7 41 22-66 181-221 (227)
213 COG0035 Upp Uracil phosphoribo 27.4 81 0.0018 26.6 3.6 46 17-66 113-159 (210)
214 PRK12549 shikimate 5-dehydroge 27.4 1.2E+02 0.0027 26.4 4.9 35 189-227 124-158 (284)
215 PRK14467 ribosomal RNA large s 27.3 3.7E+02 0.0079 24.4 8.1 59 39-100 261-320 (348)
216 PRK14093 UDP-N-acetylmuramoyla 27.2 5.2E+02 0.011 24.2 9.8 71 30-111 338-413 (479)
217 PRK09246 amidophosphoribosyltr 27.0 1.3E+02 0.0027 28.8 5.2 41 23-67 353-393 (501)
218 COG1402 Uncharacterized protei 26.9 2.8E+02 0.0061 24.0 6.9 70 41-113 39-118 (250)
219 KOG2355 Predicted ABC-type tra 26.7 1E+02 0.0022 26.5 3.9 75 155-234 129-210 (291)
220 PF00581 Rhodanese: Rhodanese- 26.6 1.4E+02 0.0031 20.9 4.5 35 191-225 66-102 (113)
221 cd04725 OMP_decarboxylase_like 26.5 40 0.00088 28.1 1.6 81 145-230 2-84 (216)
222 COG0287 TyrA Prephenate dehydr 26.2 45 0.00097 29.3 1.9 32 203-234 96-127 (279)
223 TIGR01143 murF UDP-N-acetylmur 25.8 4E+02 0.0087 24.3 8.2 53 49-112 313-369 (417)
224 PF00977 His_biosynth: Histidi 25.5 2.8E+02 0.006 23.2 6.6 113 28-161 95-208 (229)
225 PRK07349 amidophosphoribosyltr 25.3 1.3E+02 0.0029 28.7 5.0 41 23-67 372-412 (500)
226 cd01520 RHOD_YbbB Member of th 25.1 1.5E+02 0.0033 22.1 4.6 29 191-221 85-113 (128)
227 PF02225 PA: PA domain; Inter 25.0 1.6E+02 0.0035 20.5 4.4 35 189-227 31-65 (101)
228 PF13241 NAD_binding_7: Putati 24.8 1.2E+02 0.0026 21.9 3.7 36 189-229 4-39 (103)
229 PRK06781 amidophosphoribosyltr 24.7 1.4E+02 0.003 28.3 5.0 42 23-68 343-384 (471)
230 TIGR00259 thylakoid_BtpA membr 24.6 3.7E+02 0.0081 23.3 7.3 66 91-168 34-105 (257)
231 PRK05562 precorrin-2 dehydroge 24.2 1.4E+02 0.003 25.3 4.5 39 185-229 18-57 (223)
232 cd05191 NAD_bind_amino_acid_DH 24.2 2.5E+02 0.0053 19.4 5.3 35 189-227 20-54 (86)
233 PF02698 DUF218: DUF218 domain 24.2 90 0.002 24.0 3.2 36 193-228 71-106 (155)
234 PRK05819 deoD purine nucleosid 24.0 4.4E+02 0.0094 22.2 9.4 80 149-236 18-98 (235)
235 PF02153 PDH: Prephenate dehyd 23.8 36 0.00077 29.2 0.8 31 204-234 78-108 (258)
236 PHA01634 hypothetical protein 23.6 77 0.0017 24.9 2.5 32 189-226 26-57 (156)
237 cd04821 PA_M28_1_2 PA_M28_1_2: 23.5 2E+02 0.0044 22.9 5.1 40 189-228 47-101 (157)
238 PRK08341 amidophosphoribosyltr 23.4 1.3E+02 0.0028 28.2 4.5 40 24-67 330-369 (442)
239 PF09861 DUF2088: Domain of un 23.3 1.6E+02 0.0035 24.5 4.7 39 192-230 55-98 (204)
240 PRK08202 purine nucleoside pho 23.3 1.3E+02 0.0028 26.2 4.2 51 187-237 67-122 (272)
241 PRK08373 aspartate kinase; Val 22.9 5.7E+02 0.012 23.1 8.9 28 75-102 102-129 (341)
242 COG0373 HemA Glutamyl-tRNA red 22.8 1.8E+02 0.0038 27.2 5.2 37 186-226 172-208 (414)
243 PF04298 Zn_peptidase_2: Putat 22.6 1.2E+02 0.0025 25.9 3.7 35 204-238 35-70 (222)
244 PRK03803 murD UDP-N-acetylmura 22.5 2.5E+02 0.0054 25.9 6.2 134 10-161 299-434 (448)
245 PRK12769 putative oxidoreducta 22.3 1.9E+02 0.0041 28.4 5.7 37 189-229 465-501 (654)
246 cd04822 PA_M28_1_3 PA_M28_1_3: 22.2 2E+02 0.0043 22.8 4.7 39 189-227 45-97 (151)
247 cd04908 ACT_Bt0572_1 N-termina 21.7 2.2E+02 0.0048 18.4 4.3 27 201-227 8-34 (66)
248 KOG1481 Cysteine synthase [Ami 21.6 1E+02 0.0022 27.5 3.1 32 202-233 221-252 (391)
249 COG4122 Predicted O-methyltran 21.2 3E+02 0.0064 23.3 5.9 50 43-109 45-94 (219)
250 TIGR03455 HisG_C-term ATP phos 21.1 1.4E+02 0.003 21.9 3.4 23 205-227 73-95 (100)
251 TIGR00048 radical SAM enzyme, 21.1 4.4E+02 0.0096 23.9 7.4 58 40-101 268-325 (355)
252 PRK11024 colicin uptake protei 20.6 3E+02 0.0066 21.1 5.5 35 193-227 104-138 (141)
253 PRK14457 ribosomal RNA large s 20.6 5.2E+02 0.011 23.4 7.7 21 88-109 274-294 (345)
254 PF03681 UPF0150: Uncharacteri 20.5 40 0.00087 20.8 0.4 19 200-218 23-41 (48)
255 COG0540 PyrB Aspartate carbamo 20.4 2.1E+02 0.0045 25.7 4.9 176 26-233 5-197 (316)
256 cd05008 SIS_GlmS_GlmD_1 SIS (S 20.3 1.7E+02 0.0037 21.4 3.9 34 190-225 44-79 (126)
257 cd04819 PA_2 PA_2: Protease-as 20.3 2.6E+02 0.0057 21.0 5.0 39 189-229 42-80 (127)
258 PLN02398 hydroxyacylglutathion 20.2 1.5E+02 0.0033 26.6 4.2 37 189-230 94-130 (329)
259 PRK07631 amidophosphoribosyltr 20.2 2.1E+02 0.0045 27.2 5.2 42 23-68 343-384 (475)
260 TIGR01740 pyrF orotidine 5'-ph 20.1 61 0.0013 26.9 1.5 77 145-230 2-84 (213)
261 PF03195 DUF260: Protein of un 20.1 25 0.00055 26.0 -0.7 43 54-97 7-49 (101)
No 1
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=100.00 E-value=5.2e-80 Score=535.68 Aligned_cols=234 Identities=63% Similarity=0.991 Sum_probs=225.7
Q ss_pred CCCceeeeeeeeeCCCceEEEecCCcCCCcEEEEecCCCCCchhHHHHHHHHHHHHhcCCCeEEEEecccCccccccccC
Q 026473 1 MGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVIPYFGYARADRKTQ 80 (238)
Q Consensus 1 l~~~~~~~~~~~F~dGE~~v~i~~~v~g~~v~ivqs~~~~~~~~l~ell~~~~a~~~~~a~~i~~viPY~~YsRqdr~~~ 80 (238)
||++++++++++|||||++|+|.|+|||+||||+||+++|+||+|||||+|+||||++||++||+|+||||||||||+++
T Consensus 24 l~~~l~~~~~~rF~DGE~~V~i~EsVrg~dVfI~qs~~~pvnd~lmELLi~idA~k~asA~~It~ViPY~gYARQDk~~~ 103 (314)
T COG0462 24 LGIPLGKVEVKRFPDGEIYVRIEESVRGKDVFIIQSTSPPVNDNLMELLIMIDALKRASAKRITAVIPYFGYARQDKAFK 103 (314)
T ss_pred hCCCcccceeEEcCCCcEEEEecccccCCeEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCceEEEEeecchhhccCcccC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999998889
Q ss_pred CCCchhHHHHHHHHHHhCCCEEEEEecCChhccCccCccCccccccHHHHHHHHhccCCCCCeEEEEeCCCchHHHHHHH
Q 026473 81 GRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFA 160 (238)
Q Consensus 81 ~~~~~~~~~~a~ll~~~g~~~vi~vdlHs~~~~~~f~~~~~~l~~~~~la~~i~~~~~~~~~~viv~pd~g~~~~a~~~a 160 (238)
+|||+|+|++|+||+.+|+|+|+|+|+|++|+|+||++|++|+++.|.+++|+.+.+ ..++++||+||.||+.||+.+|
T Consensus 104 ~repIsaklvA~lL~~aG~drv~TvDlH~~qiqgfFdipvdnl~a~p~l~~~~~~~~-~~~d~vVVSPD~Ggv~RAr~~A 182 (314)
T COG0462 104 PREPISAKLVANLLETAGADRVLTVDLHAPQIQGFFDIPVDNLYAAPLLAEYIREKY-DLDDPVVVSPDKGGVKRARALA 182 (314)
T ss_pred CCCCEeHHHHHHHHHHcCCCeEEEEcCCchhhcccCCCccccccchHHHHHHHHHhc-CCCCcEEECCCccHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999875 4567999999999999999999
Q ss_pred HHcCCCCEEEEEEEeC-CCCcEEEEEeccCCCCCEEEEEeCcccchHHHHHHHHHHHHCCCCEEEEEEEcccccCCC
Q 026473 161 KKLSDAPLAIVDKRRH-GHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHAVFRLDY 236 (238)
Q Consensus 161 ~~l~~~~~~~~~k~r~-~~~~~~~~~~~~~v~gk~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~~fs~~~ 236 (238)
+.|+ .++++++|+|. ..+..+.+.+.||++||+|+||||||+||+|+.+|++.|+++||++|+++||||+|++++
T Consensus 183 ~~L~-~~~a~i~K~R~~~~~~v~~~~~~gdV~gk~~iiVDDiIdTgGTi~~Aa~~Lk~~GAk~V~a~~tH~vfs~~a 258 (314)
T COG0462 183 DRLG-APLAIIDKRRDSSPNVVEVMNLIGDVEGKDVVIVDDIIDTGGTIAKAAKALKERGAKKVYAAATHGVFSGAA 258 (314)
T ss_pred HHhC-CCEEEEEEeecCCCCeEEEeecccccCCCEEEEEeccccccHHHHHHHHHHHHCCCCeEEEEEEchhhChHH
Confidence 9999 89999999995 777788888999999999999999999999999999999999999999999999999754
No 2
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=100.00 E-value=6.8e-71 Score=487.87 Aligned_cols=235 Identities=55% Similarity=0.897 Sum_probs=220.3
Q ss_pred CCCceeeeeeeeeCCCceEEEecCCcCCCcEEEEecCCCCCchhHHHHHHHHHHHHhcCCCeEEEEecccCccccccccC
Q 026473 1 MGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVIPYFGYARADRKTQ 80 (238)
Q Consensus 1 l~~~~~~~~~~~F~dGE~~v~i~~~v~g~~v~ivqs~~~~~~~~l~ell~~~~a~~~~~a~~i~~viPY~~YsRqdr~~~ 80 (238)
||++++++++++|||||++|++.+++||++||++||++.|+||++||||++++|||++||++|++|+|||||+||||++.
T Consensus 26 lg~~l~~~~~~~FpdGE~~v~i~~~v~g~~V~iiqs~~~p~nd~lmeLl~~~~alr~~~a~~i~~ViPYl~YaRQDr~~~ 105 (319)
T PRK04923 26 LGVRMGKALVTRFSDGEVQVEIEESVRRQEVFVIQPTCAPSAENLMELLVLIDALKRASAASVTAVIPYFGYSRQDRRMR 105 (319)
T ss_pred hCCceeeeEEEECCCCCEEEEECCCcCCCeEEEEecCCCCCchHHHHHHHHHHHHHHcCCcEEEEEeecccccccccccc
Confidence 68999999999999999999999999999999999999899999999999999999999999999999999999999995
Q ss_pred -CCCchhHHHHHHHHHHhCCCEEEEEecCChhccCccCccCccccccHHHHHHHHhccCCCCCeEEEEeCCCchHHHHHH
Q 026473 81 -GRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLASKTVSSNDLVVVSPDVGGVARARAF 159 (238)
Q Consensus 81 -~~~~~~~~~~a~ll~~~g~~~vi~vdlHs~~~~~~f~~~~~~l~~~~~la~~i~~~~~~~~~~viv~pd~g~~~~a~~~ 159 (238)
++||+++|.+|+||+.+|+|+|+++|+|+.++++||++|++|+++.+.+++|+.+.+ +.+++++|+||.||.+||+.+
T Consensus 106 ~~~~~isak~va~ll~~~g~d~vitvD~H~~~~~~~f~~p~~~l~~~~~l~~~i~~~~-~~~~~vVVsPD~Ga~~rA~~l 184 (319)
T PRK04923 106 SSRVPITAKVAAKMISAMGADRVLTVDLHADQIQGFFDVPVDNVYASPLLLADIWRAY-GTDNLIVVSPDVGGVVRARAV 184 (319)
T ss_pred CCCCCccHHHHHHHHHhcCCCEEEEEeCChHHHHhhcCCCceeeeChHHHHHHHHHhc-CCCCCEEEEECCchHHHHHHH
Confidence 578999999999999999999999999999999999999999999999999997643 346889999999999999999
Q ss_pred HHHcCCCCEEEEEEEeCCCCcEEEEEeccCCCCCEEEEEeCcccchHHHHHHHHHHHHCCCCEEEEEEEcccccCCC
Q 026473 160 AKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHAVFRLDY 236 (238)
Q Consensus 160 a~~l~~~~~~~~~k~r~~~~~~~~~~~~~~v~gk~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~~fs~~~ 236 (238)
|+.|+..++.++.|+|...+..+.....|+++||+|+|||||+|||+|+.++++.||++||++|+++||||+|++++
T Consensus 185 A~~L~~~~~~~~~K~R~~~~~~~~~~~~gdv~Gr~viIVDDIidTG~Tl~~aa~~Lk~~GA~~V~~~~THgvfs~~a 261 (319)
T PRK04923 185 AKRLDDADLAIIDKRRPRANVATVMNIIGDVQGKTCVLVDDLVDTAGTLCAAAAALKQRGALKVVAYITHPVLSGPA 261 (319)
T ss_pred HHHcCCCCEEEeccccCCCCceEEEecccCCCCCEEEEEecccCchHHHHHHHHHHHHCCCCEEEEEEECcccCchH
Confidence 99996469999999997655445556778999999999999999999999999999999999999999999999865
No 3
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=100.00 E-value=1.2e-70 Score=487.35 Aligned_cols=235 Identities=54% Similarity=0.925 Sum_probs=220.8
Q ss_pred CCCceeeeeeeeeCCCceEEEecCCcCCCcEEEEecCCCCCchhHHHHHHHHHHHHhcCCCeEEEEecccCccccccccC
Q 026473 1 MGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVIPYFGYARADRKTQ 80 (238)
Q Consensus 1 l~~~~~~~~~~~F~dGE~~v~i~~~v~g~~v~ivqs~~~~~~~~l~ell~~~~a~~~~~a~~i~~viPY~~YsRqdr~~~ 80 (238)
||++++++++++|||||++|++.+++||+||||+||++.|+||++||||++++|||++||++|++|+|||||+||||+++
T Consensus 25 lg~~l~~~~~~~FpdGE~~v~i~~~vrg~dV~iv~s~~~~~nd~lmelll~~~alr~~~a~~i~~V~PYl~YaRQDr~~~ 104 (320)
T PRK02269 25 IGIELGKSSVRQFSDGEIQVNIEESIRGHHVFILQSTSSPVNDNLMEILIMVDALKRASAESINVVMPYYGYARQDRKAR 104 (320)
T ss_pred hCCceeeeEEEECCCCCEEEEECCCCCCCEEEEEecCCCCccchHHHHHHHHHHHHHhCCCeEEEEEeccccchhhcccC
Confidence 68999999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHhCCCEEEEEecCChhccCccCccCccccccHHHHHHHHhccCCCCCeEEEEeCCCchHHHHHHH
Q 026473 81 GRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFA 160 (238)
Q Consensus 81 ~~~~~~~~~~a~ll~~~g~~~vi~vdlHs~~~~~~f~~~~~~l~~~~~la~~i~~~~~~~~~~viv~pd~g~~~~a~~~a 160 (238)
+|||+++|.+|+||+.+|+|+|+++|+|+.++++||++|++++.+.|.+++++.++.++.+++++|+||.||++||+.+|
T Consensus 105 ~~e~isak~~a~ll~~~g~d~vit~D~H~~~~~~~f~~p~~~l~~~p~l~~~i~~~~~~~~~~vvVsPd~G~~~~A~~lA 184 (320)
T PRK02269 105 SREPITSKLVANMLEVAGVDRLLTVDLHAAQIQGFFDIPVDHLMGAPLIADYFDRRGLVGDDVVVVSPDHGGVTRARKLA 184 (320)
T ss_pred CCCCchHHHHHHHHhhcCCCEEEEECCChHHHhccccCCchhhhhHHHHHHHHHHhCCCCCCcEEEEECccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999876444578899999999999999999
Q ss_pred HHcCCCCEEEEEEEeCCC--CcEEEEEeccCCCCCEEEEEeCcccchHHHHHHHHHHHHCCCCEEEEEEEcccccCCC
Q 026473 161 KKLSDAPLAIVDKRRHGH--NVAEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHAVFRLDY 236 (238)
Q Consensus 161 ~~l~~~~~~~~~k~r~~~--~~~~~~~~~~~v~gk~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~~fs~~~ 236 (238)
+.|+ .|+.+++|+|... +..+...+.|+++||+|||||||+|||+|+.++++.|+++||++|+++||||+|++++
T Consensus 185 ~~lg-~~~~~~~k~r~~~~~~~~~~~~~~gdv~Gr~viIVDDIidTG~Tl~~aa~~Lk~~GA~~V~~~~tHglf~~~a 261 (320)
T PRK02269 185 QFLK-TPIAIIDKRRSVDKMNTSEVMNIIGNVKGKKCILIDDMIDTAGTICHAADALAEAGATEVYASCTHPVLSGPA 261 (320)
T ss_pred HHhC-CCEEEEEecccCCCCceeEEEEeccccCCCEEEEEeeecCcHHHHHHHHHHHHHCCCCEEEEEEECcccCchH
Confidence 9999 8999989887632 3333446778999999999999999999999999999999999999999999999975
No 4
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=100.00 E-value=2.5e-70 Score=482.23 Aligned_cols=235 Identities=48% Similarity=0.796 Sum_probs=220.6
Q ss_pred CCCceeeeeeeeeCCCceEEEecCCcCCCcEEEEecCCCCCchhHHHHHHHHHHHHhcCCCeEEEEecccCccccccccC
Q 026473 1 MGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVIPYFGYARADRKTQ 80 (238)
Q Consensus 1 l~~~~~~~~~~~F~dGE~~v~i~~~v~g~~v~ivqs~~~~~~~~l~ell~~~~a~~~~~a~~i~~viPY~~YsRqdr~~~ 80 (238)
||++++++++++|||||+++++.++|||+||||+||+++|+||++||||++++|||++||++|++|+||||||||||+++
T Consensus 9 l~~~l~~~~~~~F~DGE~~vri~~~v~g~~v~ii~s~~~p~nd~l~ell~~~~a~r~~~a~~i~~ViPYl~YaRQDr~~~ 88 (304)
T PRK03092 9 LGVEVTPTTAYDFANGEIYVRFEESVRGCDAFVLQSHTAPINKWLMEQLIMIDALKRASAKRITVVLPFYPYARQDKKHR 88 (304)
T ss_pred hCCceeeeEEEECCCCCEEEEECCCCCCCEEEEEeCCCCCCcHHHHHHHHHHHHHHHcCCCeEEEEEecccccccccccC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHhCCCEEEEEecCChhccCccCccCccccccHHHHHHHHhccCCCCCeEEEEeCCCchHHHHHHH
Q 026473 81 GRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFA 160 (238)
Q Consensus 81 ~~~~~~~~~~a~ll~~~g~~~vi~vdlHs~~~~~~f~~~~~~l~~~~~la~~i~~~~~~~~~~viv~pd~g~~~~a~~~a 160 (238)
+|||+++|.+|+||+.+|+|+|+++|+|+.++++||++|++|+++.+.++++|.+.+ +.+++++|+||.||++||+.++
T Consensus 89 ~~e~isak~va~lL~~~g~d~vitvD~H~~~~~~~f~~p~~~l~~~~~la~~i~~~~-~~~~~vvVspd~Ga~~~a~~la 167 (304)
T PRK03092 89 GREPISARLVADLFKTAGADRIMTVDLHTAQIQGFFDGPVDHLFAMPLLADYVRDKY-DLDNVTVVSPDAGRVRVAEQWA 167 (304)
T ss_pred CCCCccHHHHHHHHHhcCCCeEEEEecChHHHHhhcCCCeeeEechHHHHHHHHHhc-CCCCcEEEEecCchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999997753 3578899999999999999999
Q ss_pred HHcCCCCEEEEEEEeCCC--CcEEEEEeccCCCCCEEEEEeCcccchHHHHHHHHHHHHCCCCEEEEEEEcccccCCC
Q 026473 161 KKLSDAPLAIVDKRRHGH--NVAEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHAVFRLDY 236 (238)
Q Consensus 161 ~~l~~~~~~~~~k~r~~~--~~~~~~~~~~~v~gk~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~~fs~~~ 236 (238)
+.|+..|+.+++|+|+.. +..+...+.++++||+|+|||||++||+|+.++++.|+++||++|+++||||+|++++
T Consensus 168 ~~L~~~~~~~i~k~R~~~~~~~~~~~~~~~dv~gr~viIVDDIi~TG~Tl~~aa~~Lk~~Ga~~I~~~~tH~v~~~~a 245 (304)
T PRK03092 168 DRLGGAPLAFIHKTRDPTVPNQVVANRVVGDVEGRTCVLVDDMIDTGGTIAGAVRALKEAGAKDVIIAATHGVLSGPA 245 (304)
T ss_pred HHcCCCCEEEEEEEcccCCCCceEEEecCcCCCCCEEEEEccccCcHHHHHHHHHHHHhcCCCeEEEEEEcccCChHH
Confidence 999756999999999643 3334446778999999999999999999999999999999999999999999999753
No 5
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=100.00 E-value=3e-70 Score=486.12 Aligned_cols=234 Identities=53% Similarity=0.841 Sum_probs=221.5
Q ss_pred CCCceeeeeeeeeCCCceEEEecCCcCCCcEEEEecCCCCCchhHHHHHHHHHHHHhcCCCeEEEEecccCccccccccC
Q 026473 1 MGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVIPYFGYARADRKTQ 80 (238)
Q Consensus 1 l~~~~~~~~~~~F~dGE~~v~i~~~v~g~~v~ivqs~~~~~~~~l~ell~~~~a~~~~~a~~i~~viPY~~YsRqdr~~~ 80 (238)
||++++++++++|||||+++++.+++||+||||+||++.|+||++||||++++|||++||++|++|+|||||+||||++.
T Consensus 29 lg~~l~~~~~~~FpdGE~~v~i~~~vrg~dV~ivqs~~~p~nd~l~eLll~~~alr~~~a~~i~~ViPYl~YaRQDr~~~ 108 (332)
T PRK00553 29 LSMKPGEIVIQKFADGETYIRFDESVRNKDVVIFQSTCSPVNDSLMELLIAIDALKRGSAKSITAILPYYGYARQDRKTA 108 (332)
T ss_pred hCCceeeeEEEECCCCCEEEEECCCCCCCEEEEEcCCCCCCchHHHHHHHHHHHHHHcCCCeEEEEeeccccchhhcccC
Confidence 68999999999999999999999999999999999999899999999999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHhCCCEEEEEecCChhccCccCccCccccccHHHHHHHHhccCCCCCeEEEEeCCCchHHHHHHH
Q 026473 81 GRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFA 160 (238)
Q Consensus 81 ~~~~~~~~~~a~ll~~~g~~~vi~vdlHs~~~~~~f~~~~~~l~~~~~la~~i~~~~~~~~~~viv~pd~g~~~~a~~~a 160 (238)
+|||+++|.+|+||+.+|+|+|+++|+|+.++++||++|++++++.+.+++|+.+.. +.+++++|+||.||++||+.+|
T Consensus 109 ~~e~isak~vA~ll~~~g~d~vit~DlH~~~i~~~F~ipv~~l~a~~~~~~~~~~~~-~~~~~vvVsPD~gg~~rA~~lA 187 (332)
T PRK00553 109 GREPITSKLVADLLTKAGVTRVTLTDIHSDQTQGFFDIPVDILRTYHVFLSRVLELL-GKKDLVVVSPDYGGVKRARLIA 187 (332)
T ss_pred CCCCccHHHHHHHHHhcCCCEEEEEeCChHHHHhhcCCCcceeechHHHHHHHHHhc-CCCCeEEEEECCCcHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999997642 3468899999999999999999
Q ss_pred HHcCCCCEEEEEEEeCCCCcEEEEEeccCCCCCEEEEEeCcccchHHHHHHHHHHHHCCCCEEEEEEEcccccCCC
Q 026473 161 KKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHAVFRLDY 236 (238)
Q Consensus 161 ~~l~~~~~~~~~k~r~~~~~~~~~~~~~~v~gk~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~~fs~~~ 236 (238)
+.++ .|+.+++|+|...+..+...+.|+++||+|+|||||++||+|+.++++.|+++||++|+++||||+|++++
T Consensus 188 ~~lg-~~~~vi~K~r~~~~~~~~~~~~gdv~Gk~VIIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~~atHglf~~~a 262 (332)
T PRK00553 188 ESLE-LPLAIIDKRRPKHNVAESINVLGEVKNKNCLIVDDMIDTGGTVIAAAKLLKKQKAKKVCVMATHGLFNKNA 262 (332)
T ss_pred HHhC-CCEEEEEEecCCcceEeeEEeeccCCCCEEEEEeccccchHHHHHHHHHHHHcCCcEEEEEEEeeecCchH
Confidence 9999 89999999987655545556678999999999999999999999999999999999999999999999875
No 6
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=100.00 E-value=1.3e-69 Score=480.68 Aligned_cols=234 Identities=48% Similarity=0.822 Sum_probs=219.3
Q ss_pred CCCceeeeeeeeeCCCceEEEecCCcCCCcEEEEecCCCCCchhHHHHHHHHHHHHhcCCCeEEEEecccCccccccccC
Q 026473 1 MGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVIPYFGYARADRKTQ 80 (238)
Q Consensus 1 l~~~~~~~~~~~F~dGE~~v~i~~~v~g~~v~ivqs~~~~~~~~l~ell~~~~a~~~~~a~~i~~viPY~~YsRqdr~~~ 80 (238)
||++++++++++|||||.++++.+++||++|++|||++.|+||++|||+++++|||++||++|++|+|||||+||||+++
T Consensus 29 lg~~l~~~~~~~FpdGE~~v~i~~~v~g~dV~ii~s~~~~~nd~l~eLll~~~alr~~~a~~i~lViPYl~YaRQDr~~~ 108 (323)
T PRK02458 29 AGVPLGKLSSRQFSDGEIMINIEESVRGDDIYIIQSTSFPVNDHLWELLIMIDACKRASANTVNVVLPYFGYARQDRIAK 108 (323)
T ss_pred hCCceeeeEEEECCCCCEEEEecCCcCCCeEEEEecCCCCCchHHHHHHHHHHHHHHcCCceEEEEEeccccchhhcccC
Confidence 68999999999999999999999999999999999999899999999999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHhCCCEEEEEecCChhccCccCccCccccccHHHHHHHHhccCCCCCeEEEEeCCCchHHHHHHH
Q 026473 81 GRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFA 160 (238)
Q Consensus 81 ~~~~~~~~~~a~ll~~~g~~~vi~vdlHs~~~~~~f~~~~~~l~~~~~la~~i~~~~~~~~~~viv~pd~g~~~~a~~~a 160 (238)
+|||+++|.+|+||+.+|+|+|+++|+|+.++++||++|++++++.|.+++|+.+..++.+++++|+||.||++||+.++
T Consensus 109 ~ge~isak~~a~lL~~~g~d~vitvD~H~~~i~~~F~~p~~nl~~~p~~~~~l~~~~~~~~~~vvV~pd~Ga~~~A~~la 188 (323)
T PRK02458 109 PREPITAKLVANMLVKAGVDRVLTLDLHAVQVQGFFDIPVDNLFTVPLFAKHYCKKGLSGSDVVVVSPKNSGIKRARSLA 188 (323)
T ss_pred CCCCchHHHHHHHHhhcCCCeEEEEecCcHHhhccccCCceEEEEHHHHHHHHHHhCCCCCceEEEEECCChHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999776444578999999999999999999
Q ss_pred HHcCCCCEEEEEEEeCCCCcEEEEEeccCCCCCEEEEEeCcccchHHHHHHHHHHHHCCCCEEEEEEEcccccCCC
Q 026473 161 KKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHAVFRLDY 236 (238)
Q Consensus 161 ~~l~~~~~~~~~k~r~~~~~~~~~~~~~~v~gk~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~~fs~~~ 236 (238)
+.|+ .|+.++++.|..... +...+.++++||+|+|||||+|||+|+.++++.|+++||++|+++||||+|++++
T Consensus 189 ~~L~-~~~~~~~~~r~~~~~-~~~~i~gdV~gk~viIVDDIidTG~Tl~~aa~~Lk~~GA~~V~~~~tHgif~~~a 262 (323)
T PRK02458 189 EYLD-APIAIIDYAQDDSER-EEGYIIGDVAGKKAILIDDILNTGKTFAEAAKIVEREGATEIYAVASHGLFAGGA 262 (323)
T ss_pred HHhC-CCEEEEEEecCCCcc-eeeccccccCCCEEEEEcceeCcHHHHHHHHHHHHhCCCCcEEEEEEChhcCchH
Confidence 9998 899988887754322 2234678999999999999999999999999999999999999999999999975
No 7
>PTZ00145 phosphoribosylpyrophosphate synthetase; Provisional
Probab=100.00 E-value=1.1e-69 Score=491.98 Aligned_cols=234 Identities=52% Similarity=0.848 Sum_probs=221.4
Q ss_pred CCCceeeeeeeeeCCCceEEEecCCcCCCcEEEEecCCCCCchhHHHHHHHHHHHHhcCCCeEEEEecccCccccccccC
Q 026473 1 MGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVIPYFGYARADRKTQ 80 (238)
Q Consensus 1 l~~~~~~~~~~~F~dGE~~v~i~~~v~g~~v~ivqs~~~~~~~~l~ell~~~~a~~~~~a~~i~~viPY~~YsRqdr~~~ 80 (238)
||++++++++++|||||++|++.++|||+|||||||+++|+||++||||++++|||++||++|++|+|||||+||||++.
T Consensus 139 Lg~~l~~~~~~rFpDGE~~Vri~e~VrG~dV~IVqS~~~pvNd~LmELLllidAlr~agAkrItlViPYl~YaRQDR~~~ 218 (439)
T PTZ00145 139 LGTILGRVHLKRFADGEVSMQFLESIRGKDVYIIQPTCPPVNENLIELLLMISTCRRASAKKITAVIPYYGYARQDRKLS 218 (439)
T ss_pred hCCCceeeEEEECCCCCEEEEECCCcCCCeEEEEecCCCCCcHHHHHHHHHHHHHHHhccCeEEEEeecccchheecccC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHhCCCEEEEEecCChhccCccC--ccCccccccHHHHHHHHhccCCCCCeEEEEeCCCchHHHHH
Q 026473 81 GRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFD--IPVDHVYCQPVILDYLASKTVSSNDLVVVSPDVGGVARARA 158 (238)
Q Consensus 81 ~~~~~~~~~~a~ll~~~g~~~vi~vdlHs~~~~~~f~--~~~~~l~~~~~la~~i~~~~~~~~~~viv~pd~g~~~~a~~ 158 (238)
+|||++++.+|+||+.+|+|+|+++|+|+.++++||+ +|++++.+.+.+++|+.+. +..++++|+||.||.+||+.
T Consensus 219 ~gepIsak~vA~lL~~~G~d~VitvDlHs~~i~~fF~~~iPvdnl~a~~~~a~~i~~~--~l~~pVVVsPD~Ga~~RAr~ 296 (439)
T PTZ00145 219 SRVPISAADVARMIEAMGVDRVVAIDLHSGQIQGFFGPRVPVDNLEAQLIGLDYFTKK--DLYKPVIVSPDAGGVYRARK 296 (439)
T ss_pred CCCChhHHHHHHHHHHcCCCeEEEEecChHHHHhhcCCCcccccccccHHHHHHHhhc--CCCccEEEccCcchHHHHHH
Confidence 9999999999999999999999999999999999996 8999999999999999764 23678999999999999999
Q ss_pred HHHHcCC-----CCEEEEEEEeCCCCcEEEEEeccCCCCCEEEEEeCcccchHHHHHHHHHHHHCCCCEEEEEEEccccc
Q 026473 159 FAKKLSD-----APLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHAVFR 233 (238)
Q Consensus 159 ~a~~l~~-----~~~~~~~k~r~~~~~~~~~~~~~~v~gk~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~~fs 233 (238)
+++.|+. .++.++.|+|...+..+...+.|+++||+|||||||||||+|+.++++.|+++||++|+++||||+|+
T Consensus 297 ~A~~L~~~~~~~~~~avl~K~R~~~~~v~~~~lvgdV~Gk~vIIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~~~~THglfs 376 (439)
T PTZ00145 297 FQDGLNHRGISDCGIAMLIKQRTKPNEIEKMDLVGNVYDSDVIIVDDMIDTSGTLCEAAKQLKKHGARRVFAFATHGLFS 376 (439)
T ss_pred HHHHhccccccCCCEEEEEeecCCCCceEEEeccCCCCCCEEEEEcceeCcHHHHHHHHHHHHHcCCCEEEEEEEcccCC
Confidence 9999962 58899999998766666667789999999999999999999999999999999999999999999999
Q ss_pred CCC
Q 026473 234 LDY 236 (238)
Q Consensus 234 ~~~ 236 (238)
+++
T Consensus 377 ~~A 379 (439)
T PTZ00145 377 GPA 379 (439)
T ss_pred hhH
Confidence 874
No 8
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=100.00 E-value=9.8e-69 Score=475.75 Aligned_cols=234 Identities=76% Similarity=1.199 Sum_probs=220.6
Q ss_pred CCCceeeeeeeeeCCCceEEEecCCcCCCcEEEEecCCCCCchhHHHHHHHHHHHHhcCCCeEEEEecccCccccccccC
Q 026473 1 MGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVIPYFGYARADRKTQ 80 (238)
Q Consensus 1 l~~~~~~~~~~~F~dGE~~v~i~~~v~g~~v~ivqs~~~~~~~~l~ell~~~~a~~~~~a~~i~~viPY~~YsRqdr~~~ 80 (238)
||++++++++++|||||++|++.++|||++||||||++.|+||++||||++++|||++||++|++|+|||||+||||+++
T Consensus 41 lg~~l~~~~~~~FpDGE~~v~i~~~vrg~~V~ivqs~~~p~nd~l~eLll~~~alr~~ga~ri~~ViPYl~YaRQDr~~~ 120 (330)
T PRK02812 41 LGMDLGPMIRKRFADGELYVQIQESIRGCDVYLIQPTCAPVNDHLMELLIMVDACRRASARQITAVIPYYGYARADRKTA 120 (330)
T ss_pred hCCCceeeEEEECCCCCEEEEeCCCCCCCEEEEECCCCCCccHHHHHHHHHHHHHHHhCCceEEEEEecccccccccccC
Confidence 68999999999999999999999999999999999999899999999999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHhCCCEEEEEecCChhccCccCccCccccccHHHHHHHHhccCCCCCeEEEEeCCCchHHHHHHH
Q 026473 81 GRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFA 160 (238)
Q Consensus 81 ~~~~~~~~~~a~ll~~~g~~~vi~vdlHs~~~~~~f~~~~~~l~~~~~la~~i~~~~~~~~~~viv~pd~g~~~~a~~~a 160 (238)
+|||+++|.+|+||+.+|+|+|+++|+|+.++++||++|++++++.+.+++|+.+.. .+++++|+||.||.+||+.++
T Consensus 121 ~~e~isak~vA~lL~~~g~d~vitvDlH~~~~~~fF~ipv~nl~~~~~l~~~i~~~~--~~~~vvVsPD~gg~~ra~~~A 198 (330)
T PRK02812 121 GRESITAKLVANLITKAGADRVLAMDLHSAQIQGYFDIPCDHVYGSPVLLDYLASKN--LEDIVVVSPDVGGVARARAFA 198 (330)
T ss_pred CCCCchHHHHHHHHHhcCCCEEEEEECCchHHcCccCCCceeeeChHHHHHHHHhcC--CCCeEEEEECCccHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999997652 468999999999999999999
Q ss_pred HHcCCCCEEEEEEEeCCCCcEEEEEeccCCCCCEEEEEeCcccchHHHHHHHHHHHHCCCCEEEEEEEcccccCCC
Q 026473 161 KKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHAVFRLDY 236 (238)
Q Consensus 161 ~~l~~~~~~~~~k~r~~~~~~~~~~~~~~v~gk~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~~fs~~~ 236 (238)
+.|+..|+.+++|+|...+........++++||+|+|||||++||+|+.++++.|+++||++|++++|||+|++++
T Consensus 199 ~~L~~~~~~~~~k~R~~~~~~~~~~~~~~v~g~~viiVDDii~TG~T~~~a~~~L~~~Ga~~v~~~~tH~v~s~~a 274 (330)
T PRK02812 199 KKLNDAPLAIIDKRRQAHNVAEVLNVIGDVKGKTAILVDDMIDTGGTICEGARLLRKEGAKQVYACATHAVFSPPA 274 (330)
T ss_pred HHhCCCCEEEEEeeccCCceeeeEeccccCCCCEEEEEccccCcHHHHHHHHHHHhccCCCeEEEEEEcccCChHH
Confidence 9995479999999987655444456678999999999999999999999999999999999999999999999874
No 9
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=100.00 E-value=1.4e-68 Score=470.66 Aligned_cols=230 Identities=31% Similarity=0.489 Sum_probs=214.3
Q ss_pred CCCceeeeeeeeeCCCceEEEecCCcCCCcEEEEecCCCCCchhHHHHHHHHHHHHhcCCCeEEEEecccCccccccccC
Q 026473 1 MGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVIPYFGYARADRKTQ 80 (238)
Q Consensus 1 l~~~~~~~~~~~F~dGE~~v~i~~~v~g~~v~ivqs~~~~~~~~l~ell~~~~a~~~~~a~~i~~viPY~~YsRqdr~~~ 80 (238)
||++++++++++|||||.+|++.+++||+||||+||+++| ||++|||+++++|||++||++||+|+||||||||||+++
T Consensus 22 lg~~~~~~~~~~F~dGE~~v~i~~~v~g~~V~ivqs~~~~-n~~l~elll~~~alr~~~a~~i~~ViPY~~YaRqDr~~~ 100 (301)
T PRK07199 22 LGVEVGRIELHRFPDGESYVRLDSPVAGRTVVLVCSLDRP-DEKLLPLLFAAEAARELGARRVGLVAPYLAYMRQDIAFH 100 (301)
T ss_pred hCCceeeeEEEECCCCCEEEEECCCCCCCEEEEECCCCCC-cHHHHHHHHHHHHHHHcCCCeEEEEeecccccccccccC
Confidence 6899999999999999999999999999999999999887 999999999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHhCCCEEEEEecCC---hhccCccCccCccccccHHHHHHHHhccCCCCCeEEEEeCCCchHHHH
Q 026473 81 GRESIAAKLVANLITEAGADRVLACDLHS---GQSMGYFDIPVDHVYCQPVILDYLASKTVSSNDLVVVSPDVGGVARAR 157 (238)
Q Consensus 81 ~~~~~~~~~~a~ll~~~g~~~vi~vdlHs---~~~~~~f~~~~~~l~~~~~la~~i~~~~~~~~~~viv~pd~g~~~~a~ 157 (238)
+|||+++|.+|+||+. |+|+|+++|+|+ .++++||++|++++++.+.+++++.+. .+++++|+||.||.+|++
T Consensus 101 ~ge~isak~vA~ll~~-~~d~vit~DlH~~~~~~~~~~f~ip~~nl~~~~~la~~l~~~---~~~~vVVsPd~g~~~~a~ 176 (301)
T PRK07199 101 PGEAISQRHFARLLSG-SFDRLVTVDPHLHRYPSLSEVYPIPAVVLSAAPAIAAWIRAH---VPRPLLIGPDEESEQWVA 176 (301)
T ss_pred CCCCccHHHHHHHHHh-hcCeEEEEeccchhhHHhcCcccCCccccchHHHHHHHHHhc---CCCcEEEEeCCChHHHHH
Confidence 9999999999999985 899999999998 577899999999999999999999765 357899999999999999
Q ss_pred HHHHHcCCCCEEEEEEEeCCCCcEEEEEe-ccCCCCCEEEEEeCcccchHHHHHHHHHHHHCCCCEEEEEEEcccccCCC
Q 026473 158 AFAKKLSDAPLAIVDKRRHGHNVAEVMNL-IGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHAVFRLDY 236 (238)
Q Consensus 158 ~~a~~l~~~~~~~~~k~r~~~~~~~~~~~-~~~v~gk~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~~fs~~~ 236 (238)
.+++.++ .|+.+++|+|...+..+.... .++++||+|+|||||+|||+|+.++++.||++||++|+++||||+|++++
T Consensus 177 ~la~~l~-~~~~~~~K~R~~~~~~~~~~~~~~~v~Gr~vIIVDDIidTG~Tl~~aa~~Lk~~GA~~V~~~~tHgvfs~~a 255 (301)
T PRK07199 177 AVAERAG-APHAVLRKTRHGDRDVEISLPDAAPWAGRTPVLVDDIVSTGRTLIEAARQLRAAGAASPDCVVVHALFAGDA 255 (301)
T ss_pred HHHHHhC-CCEEEEEEEecCCCeEEEEeccCcccCCCEEEEEecccCcHHHHHHHHHHHHHCCCcEEEEEEEeeeCChHH
Confidence 9999999 899999999976655444322 34689999999999999999999999999999999999999999999874
No 10
>PLN02369 ribose-phosphate pyrophosphokinase
Probab=100.00 E-value=2.5e-68 Score=469.18 Aligned_cols=235 Identities=94% Similarity=1.365 Sum_probs=220.8
Q ss_pred CCCceeeeeeeeeCCCceEEEecCCcCCCcEEEEecCCCCCchhHHHHHHHHHHHHhcCCCeEEEEecccCccccccccC
Q 026473 1 MGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVIPYFGYARADRKTQ 80 (238)
Q Consensus 1 l~~~~~~~~~~~F~dGE~~v~i~~~v~g~~v~ivqs~~~~~~~~l~ell~~~~a~~~~~a~~i~~viPY~~YsRqdr~~~ 80 (238)
||++++++++++|||||+++++.+++||++|+|+||+++|+||++|||+++++|||++||++|++|+|||||+||||++.
T Consensus 11 lg~~l~~~~~~~FpdGE~~v~i~~~v~g~~V~iv~s~~~p~nd~l~eLl~~~~a~r~~~a~~i~~ViPYl~YsRQDr~~~ 90 (302)
T PLN02369 11 LGLELGKITIKRFADGEIYVQLQESVRGCDVFLVQPTCPPANENLMELLIMIDACRRASAKRITAVIPYFGYARADRKTQ 90 (302)
T ss_pred hCCceeeeEEEECCCCCEEEEECCCCCCCeEEEEecCCCCcchHHHHHHHHHHHHHHcCCCeEEEEeecccccccccccC
Confidence 68999999999999999999999999999999999999899999999999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHhCCCEEEEEecCChhccCccCccCccccccHHHHHHHHhccCCCCCeEEEEeCCCchHHHHHHH
Q 026473 81 GRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFA 160 (238)
Q Consensus 81 ~~~~~~~~~~a~ll~~~g~~~vi~vdlHs~~~~~~f~~~~~~l~~~~~la~~i~~~~~~~~~~viv~pd~g~~~~a~~~a 160 (238)
+|||+++|.+|+||+.+|+|+|+++|+|+.++++||++|++++++.+.+++|+.+.....+++++|+||.||.+||+.++
T Consensus 91 ~~e~isak~va~lL~~~g~d~vi~vDlHs~~i~~~F~ip~~~l~~~~~~~~~i~~~~~~~~~~vvVspd~gg~~~a~~~a 170 (302)
T PLN02369 91 GRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYGQPVILDYLASKTISSPDLVVVSPDVGGVARARAFA 170 (302)
T ss_pred CCCCchHHHHHHHHHhcCCCEEEEEECCchHHhhccCCceecccchHHHHHHHHHhCCCCCceEEEEECcChHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999775333367899999999999999999
Q ss_pred HHcCCCCEEEEEEEeCCCCcEEEEEeccCCCCCEEEEEeCcccchHHHHHHHHHHHHCCCCEEEEEEEcccccCC
Q 026473 161 KKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHAVFRLD 235 (238)
Q Consensus 161 ~~l~~~~~~~~~k~r~~~~~~~~~~~~~~v~gk~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~~fs~~ 235 (238)
+.++..|+.++.|+|.+.+......+.++++||+|+|||||++||+|+.++++.|++.||++|++++|||+|+++
T Consensus 171 ~~l~~~~~~~l~k~R~~~~~~~~~~~~~~v~g~~viivDDii~TG~Tl~~a~~~l~~~Ga~~v~~~~tH~v~~~~ 245 (302)
T PLN02369 171 KKLSDAPLAIVDKRRQGHNVAEVMNLIGDVKGKVAIMVDDMIDTAGTITKGAALLHQEGAREVYACATHAVFSPP 245 (302)
T ss_pred HHcCCCCEEEEEEecCCcceeeeEecCCCCCCCEEEEEcCcccchHHHHHHHHHHHhCCCCEEEEEEEeeeeCHH
Confidence 999438999999999765554445677899999999999999999999999999999999999999999999985
No 11
>KOG1448 consensus Ribose-phosphate pyrophosphokinase [Nucleotide transport and metabolism; Amino acid transport and metabolism]
Probab=100.00 E-value=1.5e-68 Score=454.90 Aligned_cols=235 Identities=53% Similarity=0.877 Sum_probs=223.9
Q ss_pred CCCceeeeeeeeeCCCceEEEecCCcCCCcEEEEecCCCCCchhHHHHHHHHHHHHhcCCCeEEEEecccCccccccccC
Q 026473 1 MGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVIPYFGYARADRKTQ 80 (238)
Q Consensus 1 l~~~~~~~~~~~F~dGE~~v~i~~~v~g~~v~ivqs~~~~~~~~l~ell~~~~a~~~~~a~~i~~viPY~~YsRqdr~~~ 80 (238)
||++++++.+++|+|||++|++.+++||+|||++||.|.|.||+|||||.|++|||+++|++||+|+|||||+||||+.+
T Consensus 23 lgi~l~~v~~kkf~nge~~v~i~esvR~~dV~iiqsgsg~ind~lmELLI~I~ac~~asa~~vTaViP~Fpyarq~~k~~ 102 (316)
T KOG1448|consen 23 LGIELGKVNLKKFSNGETSVQIGESVRGEDVYIIQSGSGPINDNLMELLIMINACKRASASRVTAVIPYFPYARQDKKDK 102 (316)
T ss_pred hCCCcceeeeEEccCCcEEEecccccccCcEEEeccCCCcchHHHHHHHHHHHhcchhhhheeEEeccCCccccchhhhh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHhCCCEEEEEecCChhccCccCccCccccccHHHHHHHHhccCCCCCeEEEEeCCCchHHHHHHH
Q 026473 81 GRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFA 160 (238)
Q Consensus 81 ~~~~~~~~~~a~ll~~~g~~~vi~vdlHs~~~~~~f~~~~~~l~~~~~la~~i~~~~~~~~~~viv~pd~g~~~~a~~~a 160 (238)
.+.+++||++|+||...|+|++||+|+|..|.++||++|++|+++.|.+.+|++....+.++.++|+||.||.+|++.+|
T Consensus 103 ~r~~i~aklVanlls~aG~dhvItmDlHa~Q~qgfF~ipVdnly~~p~~l~~ir~~~~~~~~~vivSPdaGgaKR~~s~a 182 (316)
T KOG1448|consen 103 SRAPILAKLVANLLSSAGADHVITMDLHASQIQGFFDIPVDNLYAEPAVLNYIRENIPDSENAVIVSPDAGGAKRVTSLA 182 (316)
T ss_pred hhhhHHHHHHHhhhhccCCceEEEecccchhhCceeeccchhhccchHHHHHHHhhCCCccceEEECCCcchhhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999987767889999999999999999999
Q ss_pred HHcCCCCEEEEEEEeCCCCcEE-EEEeccCCCCCEEEEEeCcccchHHHHHHHHHHHHCCCCEEEEEEEcccccCCC
Q 026473 161 KKLSDAPLAIVDKRRHGHNVAE-VMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHAVFRLDY 236 (238)
Q Consensus 161 ~~l~~~~~~~~~k~r~~~~~~~-~~~~~~~v~gk~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~~fs~~~ 236 (238)
+.|+ ..++.+.|.|...+.+. .+.+.||++||.++|||||++|++|+.++++.|.++||++|++++|||+||+++
T Consensus 183 d~l~-~~fali~ker~k~~~v~~~m~LVGDv~gkvailVDDm~dt~GTl~~aa~~L~~~GA~kV~a~~THgVfs~~a 258 (316)
T KOG1448|consen 183 DRLN-LDFALIHKERRKANEVDIRMVLVGDVKGKVAILVDDMADTCGTLIKAADKLLEHGAKKVYAIVTHGVFSGPA 258 (316)
T ss_pred Hhhc-chhhhhhhhhhcccccceEEEEEeccCCcEEEEecccccccchHHHHHHHHHhcCCceEEEEEcceeccccH
Confidence 9998 77777777776555554 578899999999999999999999999999999999999999999999999864
No 12
>PRK01259 ribose-phosphate pyrophosphokinase; Provisional
Probab=100.00 E-value=5.3e-67 Score=462.29 Aligned_cols=233 Identities=61% Similarity=0.961 Sum_probs=220.1
Q ss_pred CCCceeeeeeeeeCCCceEEEecCCcCCCcEEEEecCCCCCchhHHHHHHHHHHHHhcCCCeEEEEecccCccccccccC
Q 026473 1 MGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVIPYFGYARADRKTQ 80 (238)
Q Consensus 1 l~~~~~~~~~~~F~dGE~~v~i~~~v~g~~v~ivqs~~~~~~~~l~ell~~~~a~~~~~a~~i~~viPY~~YsRqdr~~~ 80 (238)
||++++++++++|||||+++|+.++++|++|+|+||++.|+||++|||+++++|||++||++|++|+||||||||||+++
T Consensus 20 lg~~~~~~~~~~FpdGE~~vri~~~v~g~~V~ii~s~~~~~nd~l~eLll~~~alr~~ga~~i~lViPYl~YsRQDr~~~ 99 (309)
T PRK01259 20 LGIPLGKASVGRFSDGEISVEINENVRGKDVFIIQSTCAPTNDNLMELLIMIDALKRASAGRITAVIPYFGYARQDRKAR 99 (309)
T ss_pred hCCceeeeEEEECCCCCEEEEeCCCCCCCEEEEECCCCCCCcHHHHHHHHHHHHHHHcCCceEEEEeeccccchhhhhhc
Confidence 68999999999999999999999999999999999998888999999999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHhCCCEEEEEecCChhccCccCccCccccccHHHHHHHHhccCCCCCeEEEEeCCCchHHHHHHH
Q 026473 81 GRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFA 160 (238)
Q Consensus 81 ~~~~~~~~~~a~ll~~~g~~~vi~vdlHs~~~~~~f~~~~~~l~~~~~la~~i~~~~~~~~~~viv~pd~g~~~~a~~~a 160 (238)
+|||+++|.+|+||+.+|+|+|+++|+|+.++++||++|++++.+.+.+++++.+.. .+++++++|+.||.+||+.++
T Consensus 100 ~ge~isak~~a~lL~~~g~d~vitvD~H~~~~~~~f~~p~~~l~~~~~l~~~i~~~~--~~~~vvv~pd~Gg~~~A~~la 177 (309)
T PRK01259 100 SRVPITAKLVANLLETAGADRVLTMDLHADQIQGFFDIPVDNLYGSPILLEDIKQKN--LENLVVVSPDVGGVVRARALA 177 (309)
T ss_pred cCCCchHHHHHHHHhhcCCCEEEEEcCChHHHcCcCCCCceeeeecHHHHHHHHhcC--CCCcEEEEECCCcHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998753 468899999999999999999
Q ss_pred HHcCCCCEEEEEEEeCCCCcEEEEEeccCCCCCEEEEEeCcccchHHHHHHHHHHHHCCCCEEEEEEEcccccCCC
Q 026473 161 KKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHAVFRLDY 236 (238)
Q Consensus 161 ~~l~~~~~~~~~k~r~~~~~~~~~~~~~~v~gk~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~~fs~~~ 236 (238)
+.|| .|+.++.|.|...+........++++||+|+|||||++||+|+.++++.|+++||++|+++||||+|++++
T Consensus 178 ~~Lg-~~~~~~~k~r~~~~~~~~~~~~~~~~g~~vliVDDii~TG~T~~~a~~~l~~~Ga~~v~~~~tH~i~~~~a 252 (309)
T PRK01259 178 KRLD-ADLAIIDKRRPRANVSEVMNIIGDVEGRDCILVDDMIDTAGTLCKAAEALKERGAKSVYAYATHPVLSGGA 252 (309)
T ss_pred HHhC-CCEEEEEeecccceeEEEEeecccCCCCEEEEEecccCcHHHHHHHHHHHHccCCCEEEEEEEeeeCChHH
Confidence 9999 89999999887655444445677899999999999999999999999999999999999999999999864
No 13
>PRK00934 ribose-phosphate pyrophosphokinase; Provisional
Probab=100.00 E-value=8e-66 Score=450.73 Aligned_cols=230 Identities=37% Similarity=0.650 Sum_probs=213.6
Q ss_pred CCCceeeeeeeeeCCCceEEEecCCcCCCcEEEEecCCCCCchhHHHHHHHHHHHHhcCCCeEEEEecccCccccccccC
Q 026473 1 MGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVIPYFGYARADRKTQ 80 (238)
Q Consensus 1 l~~~~~~~~~~~F~dGE~~v~i~~~v~g~~v~ivqs~~~~~~~~l~ell~~~~a~~~~~a~~i~~viPY~~YsRqdr~~~ 80 (238)
||++++++++++|||||.+|++.+++||++|+|+|++. |+||++||||++++|||++||++|++|+|||||+||||+++
T Consensus 19 l~~~~~~~~~~~FpdGE~~v~i~~~v~g~~v~i~~~~~-~~~d~l~ell~~~~alr~~ga~~i~~v~PY~~YaRqDr~~~ 97 (285)
T PRK00934 19 LNTELALVETKRFPDGELYVRILGEIDGEDVVIISTTY-PQDENLVELLLLIDALRDEGAKSITLVIPYLGYARQDKRFK 97 (285)
T ss_pred HCCceEeeEEEECCCCCEEEEECCCcCCCEEEEEeCCC-CCcHHHHHHHHHHHHHHHcCCCeEEEEecCCcccccccccC
Confidence 68999999999999999999999999999999999964 67899999999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHhCCCEEEEEecCChhccCccCccCccccccHHHHHHHHhccCCCCCeEEEEeCCCchHHHHHHH
Q 026473 81 GRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFA 160 (238)
Q Consensus 81 ~~~~~~~~~~a~ll~~~g~~~vi~vdlHs~~~~~~f~~~~~~l~~~~~la~~i~~~~~~~~~~viv~pd~g~~~~a~~~a 160 (238)
+|||+++|.+|+||+.+| |+|+|+|+|+.++++||++|++++++.+.+++++.+. .+++++++|+.||.+||..+|
T Consensus 98 ~ge~isak~~a~ll~~~~-d~vitvD~H~~~~~~~f~~~~~~l~a~~~la~~i~~~---~~~~vvv~pd~Ga~~~a~~lA 173 (285)
T PRK00934 98 PGEPISARAIAKIISAYY-DRIITINIHEPSILEFFPIPFINLDAAPLIAEYIGDK---LDDPLVLAPDKGALELAKEAA 173 (285)
T ss_pred CCCCccHHHHHHHHHHhc-CEEEEEcCChHHHcCcCCCcEeEeecHHHHHHHHHhc---CCCCEEEEeCCchHHHHHHHH
Confidence 999999999999999998 9999999999999999999999999999999999553 356799999999999999999
Q ss_pred HHcCCCCEEEEEEEeCCCCcEEEEEeccCCCCCEEEEEeCcccchHHHHHHHHHHHHCCCCEEEEEEEcccccCCC
Q 026473 161 KKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHAVFRLDY 236 (238)
Q Consensus 161 ~~l~~~~~~~~~k~r~~~~~~~~~~~~~~v~gk~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~~fs~~~ 236 (238)
+.++ .|+.+++|.|......+.....++++||+|+|||||+|||+|+.++++.|+++||++|+++|+||+|++++
T Consensus 174 ~~l~-~~~~~i~k~r~~~~~~~~~~~~~~v~Gk~VlIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~~~~H~i~~~~a 248 (285)
T PRK00934 174 EILG-CEYDYLEKTRISPTEVEIAPKNLDVKGKDVLIVDDIISTGGTMATAIKILKEQGAKKVYVACVHPVLVGDA 248 (285)
T ss_pred HHhC-CCEEEEEEEecCCCeEEEeccccccCCCEEEEEcCccccHHHHHHHHHHHHHCCCCEEEEEEEeeccCcHH
Confidence 9999 89999999987654444333345899999999999999999999999999999999999999999999864
No 14
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=100.00 E-value=1.5e-65 Score=461.39 Aligned_cols=229 Identities=30% Similarity=0.502 Sum_probs=209.8
Q ss_pred CceeeeeeeeeCCCceEEEecCCcCCCcEEEEecCCC--------------CCchhHHHHHHHHHHHHhcCCCeEEEEec
Q 026473 3 VELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCP--------------PANENLMELLIMIDACRRASAKNITAVIP 68 (238)
Q Consensus 3 ~~~~~~~~~~F~dGE~~v~i~~~v~g~~v~ivqs~~~--------------~~~~~l~ell~~~~a~~~~~a~~i~~viP 68 (238)
++++++++++|||||++|++.++|||+||||+||++. |+||++||||++++||| +||++|++|+|
T Consensus 52 ~~l~~~~~~~FpDGE~~vri~~~Vrg~dV~ivqs~~~~~v~~~~~~~~~~~p~nd~lmeLll~idalr-agA~rIt~ViP 130 (382)
T PRK06827 52 SYLIPAKFIRFSNGEAKGEILESVRGKDIYILQDVGNYSVTYNMFGEKNHMSPDDHFQDLKRTIDAIR-GKARRITVIMP 130 (382)
T ss_pred ceeeeeEEEECCCCCEEEEECCCCCCCeEEEEecCCcccccccccccccCCCCcHHHHHHHHHHHHHh-cCCCeEEEEee
Confidence 4599999999999999999999999999999999874 78999999999999999 99999999999
Q ss_pred ccCccccccccCCCCchhHHHHHHHHHHhCCCEEEEEecCChhccCccC-ccCccccccHHHHHHHHhcc--C--CCCCe
Q 026473 69 YFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFD-IPVDHVYCQPVILDYLASKT--V--SSNDL 143 (238)
Q Consensus 69 Y~~YsRqdr~~~~~~~~~~~~~a~ll~~~g~~~vi~vdlHs~~~~~~f~-~~~~~l~~~~~la~~i~~~~--~--~~~~~ 143 (238)
||||+||||+ .+|||+|+|.+|+||+.+|+|+|+++|+|+.++++||+ .|++++++.+.+++|+.+.. . +.+++
T Consensus 131 Y~~YaRQDr~-~~~e~itak~vA~lL~~~G~d~vitvDlHs~~i~~~F~~~pvdnl~a~~~l~~~i~~~i~~l~~d~~~~ 209 (382)
T PRK06827 131 FLYESRQHKR-KGRESLDCALALQELEELGVDNIITFDAHDPRIENAIPLMGFENLYPSYQIIKALLKNEKDLEIDKDHL 209 (382)
T ss_pred cccccccccc-cCCCCccHHHHHHHHHHcCCCeEEEecCChHHhcccCCCCCcCCcCchHHHHHHHHHhcccccccCCCc
Confidence 9999999999 79999999999999999999999999999999999998 47999999999999997542 1 23678
Q ss_pred EEEEeCCCchHHHHHHHHHcCCCCEEEEEEEeCCCCc------EEEEEecc-CCCCCEEEEEeCcccchHHHHHHHHHHH
Q 026473 144 VVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNV------AEVMNLIG-DVKGKVAVMVDDMIDTAGTIAKGAALLH 216 (238)
Q Consensus 144 viv~pd~g~~~~a~~~a~~l~~~~~~~~~k~r~~~~~------~~~~~~~~-~v~gk~vlIVDDii~TG~Tl~~a~~~Lk 216 (238)
++|+||.||++||+.+|+.|+ .|+.+++|+|...+. .......| +++||+|||||||++||+|+.++++.|+
T Consensus 210 VVVsPD~Gg~~rA~~~A~~Lg-~~~ai~~K~R~~~~~~~g~~~~~~~~~~g~dV~gr~vIIVDDII~TG~Tl~~aa~~Lk 288 (382)
T PRK06827 210 MVISPDTGAMDRAKYYASVLG-VDLGLFYKRRDYSRVVNGRNPIVAHEFLGRDVEGKDVLIVDDMIASGGSMIDAAKELK 288 (382)
T ss_pred EEEEECccchHHHHHHHHHhC-CCEEEEEcccCCcccccCCCceEEEecCCcccCCCEEEEEeCCcCcHHHHHHHHHHHH
Confidence 999999999999999999999 899999999864321 12335567 8999999999999999999999999999
Q ss_pred HCCCCEEEEEEEcccccC
Q 026473 217 QEGAREVYACCTHAVFRL 234 (238)
Q Consensus 217 ~~Ga~~V~~~~tH~~fs~ 234 (238)
++||++|+++||||+|++
T Consensus 289 ~~GA~~V~~~~tH~vf~~ 306 (382)
T PRK06827 289 SRGAKKIIVAATFGFFTN 306 (382)
T ss_pred HcCCCEEEEEEEeecChH
Confidence 999999999999999983
No 15
>PLN02297 ribose-phosphate pyrophosphokinase
Probab=100.00 E-value=6.3e-65 Score=448.91 Aligned_cols=228 Identities=26% Similarity=0.395 Sum_probs=206.2
Q ss_pred CCceeeeeeeeeCCCceEEEe--cCCcCCCcEEEEecCCCCCchhHHHHHHHHHHHHhcCCCeEEEEecccCcccccccc
Q 026473 2 GVELGKINIKRFADGEIYVQL--QESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVIPYFGYARADRKT 79 (238)
Q Consensus 2 ~~~~~~~~~~~F~dGE~~v~i--~~~v~g~~v~ivqs~~~~~~~~l~ell~~~~a~~~~~a~~i~~viPY~~YsRqdr~~ 79 (238)
|++++++++++|||||.++++ ++++||++|||+||++.| |++||||++++|||++||++|++|+|||||+||||++
T Consensus 38 g~~l~~~~~~~FpDGE~~v~v~~~~~vrg~~V~ivqs~~~p--d~lmELLl~~dAlr~~ga~~i~~ViPY~~YaRQDr~~ 115 (326)
T PLN02297 38 AIELGSINWRKFPDGFPNLFINNAHGIRGQHVAFLASFSSP--AVIFEQLSVIYALPKLFVASFTLVLPFFPTGTSERVE 115 (326)
T ss_pred CCceeeeEEEECCCCCEEEEEcCCCCcCCCeEEEECCCCCC--hHHHHHHHHHHHHHHcCCCEEEEEeeCChhhcCCCCC
Confidence 799999999999999755555 699999999999999866 7899999999999999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHH-----hCCCEEEEEecCChhccCccCccCccc--cccHHHHHHHHhccCCCCCeEEEEeCCCc
Q 026473 80 QGRESIAAKLVANLITE-----AGADRVLACDLHSGQSMGYFDIPVDHV--YCQPVILDYLASKTVSSNDLVVVSPDVGG 152 (238)
Q Consensus 80 ~~~~~~~~~~~a~ll~~-----~g~~~vi~vdlHs~~~~~~f~~~~~~l--~~~~~la~~i~~~~~~~~~~viv~pd~g~ 152 (238)
++|||+++|.+|+||+. +|+|+|+++|+|+.++++||+.|+.++ ++.+.+++|+.+.. +.+++++|+||.||
T Consensus 116 ~~ge~isak~vA~ll~~~~~~~~g~d~vitvDlH~~~~~~fF~~~~~~l~l~a~~~l~~~i~~~~-~~~~~vvVsPD~Ga 194 (326)
T PLN02297 116 REGDVATAFTLARILSNIPISRGGPTSLVIFDIHALQERFYFGDNVLPCFESGIPLLKKRLQQLP-DSDNIVIAFPDDGA 194 (326)
T ss_pred CCCCCchHHHHHHHHhcccccccCCCEEEEEeCCChHHCCccCCcccchhhccHHHHHHHHHhcc-ccCCcEEEecCccH
Confidence 99999999999999999 799999999999999999999888865 89999999997641 23678999999999
Q ss_pred hHHHHHHHHHcCCCCEEEEEEEeCCCCcEEEEEeccCCCCCEEEEEeCcccchHHHHHHHHHHHHCCCCEEEEEEEcccc
Q 026473 153 VARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHAVF 232 (238)
Q Consensus 153 ~~~a~~~a~~l~~~~~~~~~k~r~~~~~~~~~~~~~~v~gk~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~~f 232 (238)
.+|+..++ ++ .|+.+++|+|.+... ......++++||+|+|||||+|||+|+.++++.|+++||++|+++||||+|
T Consensus 195 ~~ra~~~a--~~-~~~~~~~K~R~g~~~-~~~~~~~dv~gr~vlIVDDIidTG~Tl~~aa~~L~~~Ga~~V~~~~THglf 270 (326)
T PLN02297 195 WKRFHKQF--EH-FPMVVCTKVREGDKR-IVRIKEGNPAGRHVVIVDDLVQSGGTLIECQKVLAAHGAAKVSAYVTHGVF 270 (326)
T ss_pred HHHHHHHc--CC-CCEEEEEeEECCCce-EEEecccccCCCeEEEEecccCcHHHHHHHHHHHHHCCCcEEEEEEECccc
Confidence 99988876 45 899999999975332 223567899999999999999999999999999999999999999999999
Q ss_pred cCCC
Q 026473 233 RLDY 236 (238)
Q Consensus 233 s~~~ 236 (238)
++++
T Consensus 271 s~~a 274 (326)
T PLN02297 271 PNES 274 (326)
T ss_pred ChhH
Confidence 9864
No 16
>TIGR01251 ribP_PPkin ribose-phosphate pyrophosphokinase. In some systems, close homologs lacking enzymatic activity exist and perform regulatory functions. The model is designated subfamily rather than equivalog for this reason.
Probab=100.00 E-value=1.3e-64 Score=447.60 Aligned_cols=233 Identities=60% Similarity=0.950 Sum_probs=219.6
Q ss_pred CCCceeeeeeeeeCCCceEEEecCCcCCCcEEEE-ecCCCCCchhHHHHHHHHHHHHhcCCCeEEEEecccCcccccccc
Q 026473 1 MGVELGKINIKRFADGEIYVQLQESVRGCDVYLV-QPTCPPANENLMELLIMIDACRRASAKNITAVIPYFGYARADRKT 79 (238)
Q Consensus 1 l~~~~~~~~~~~F~dGE~~v~i~~~v~g~~v~iv-qs~~~~~~~~l~ell~~~~a~~~~~a~~i~~viPY~~YsRqdr~~ 79 (238)
||++++++++++|||||+++++.++++|+||+|+ ||+++|+||++|||+++++|||++||++|++|+|||||+||||++
T Consensus 20 lg~~~~~~~~~~FpdGE~~v~i~~~v~g~~v~iv~~s~~~~~~~~l~el~~~~~a~r~~ga~~i~~v~PYl~Y~RqDr~~ 99 (308)
T TIGR01251 20 LGLPLGDVEVKRFPDGELYVRINESVRGKDVFIIQQSTSAPVNDNLMELLIMIDALKRASAKSITAVIPYYGYARQDKKF 99 (308)
T ss_pred hCCeeeeeEEEECCCCCEEEEECCCCCCCeEEEEeCCCCCCccHHHHHHHHHHHHHHHcCCCeEEEEEEecccchhcccc
Confidence 6899999999999999999999999999999999 999888899999999999999999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHHhCCCEEEEEecCChhccCccCccCccccccHHHHHHHHhccCCCCCeEEEEeCCCchHHHHHH
Q 026473 80 QGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLASKTVSSNDLVVVSPDVGGVARARAF 159 (238)
Q Consensus 80 ~~~~~~~~~~~a~ll~~~g~~~vi~vdlHs~~~~~~f~~~~~~l~~~~~la~~i~~~~~~~~~~viv~pd~g~~~~a~~~ 159 (238)
++|||+++|.+|+||+.+|+|+++++|+|+.+.++||++|++++++.+.+++++.+.. .+++++++|+.||.+||..+
T Consensus 100 ~~ge~is~~~~a~ll~~~g~d~vit~DlHs~~~~~~f~ip~~~l~a~~~l~~~i~~~~--~~~~viv~pd~g~~~~A~~l 177 (308)
T TIGR01251 100 KSREPISAKLVANLLETAGADRVLTVDLHSPQIQGFFDVPVDNLYASPVLAEYLKKKI--LDNPVVVSPDAGGVERAKKV 177 (308)
T ss_pred CCCCCchHHHHHHHHHHcCCCEEEEecCChHHhcCcCCCceecccCHHHHHHHHHhhC--CCCCEEEEECCchHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998763 36789999999999999999
Q ss_pred HHHcCCCCEEEEEEEeC-CCCcEEEEEeccCCCCCEEEEEeCcccchHHHHHHHHHHHHCCCCEEEEEEEcccccCCC
Q 026473 160 AKKLSDAPLAIVDKRRH-GHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHAVFRLDY 236 (238)
Q Consensus 160 a~~l~~~~~~~~~k~r~-~~~~~~~~~~~~~v~gk~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~~fs~~~ 236 (238)
|+.++ .|+.++.|.|. ..+........++++||+|+||||+++||+|+.++++.|+++||++|++++|||+|+++.
T Consensus 178 A~~Lg-~~~~~i~k~r~~~~~~~~~~~~~~~v~g~~vliVDDii~tG~Tl~~a~~~l~~~ga~~v~~~~th~v~~~~a 254 (308)
T TIGR01251 178 ADALG-CPLAIIDKRRISATNEVEVMNLVGDVEGKDVVIVDDIIDTGGTIAKAAEILKSAGAKRVIAAATHGVFSGPA 254 (308)
T ss_pred HHHhC-CCEEEEEEEecCCCCEEEEEecccccCCCEEEEEccccCCHHHHHHHHHHHHhcCCCEEEEEEEeeecCcHH
Confidence 99999 89999999997 444444445677899999999999999999999999999999999999999999999863
No 17
>KOG1503 consensus Phosphoribosylpyrophosphate synthetase-associated protein [Amino acid transport and metabolism; Nucleotide transport and metabolism]
Probab=100.00 E-value=6.5e-51 Score=337.68 Aligned_cols=234 Identities=35% Similarity=0.644 Sum_probs=212.9
Q ss_pred CCCceeeeeeeeeCCCceEEEecCCcCCCcEEEEecCCCCCchhHHHHHHHHHHHHhcCCCeEEEEecccCccccccccC
Q 026473 1 MGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVIPYFGYARADRKTQ 80 (238)
Q Consensus 1 l~~~~~~~~~~~F~dGE~~v~i~~~v~g~~v~ivqs~~~~~~~~l~ell~~~~a~~~~~a~~i~~viPY~~YsRqdr~~~ 80 (238)
||+++++..+.+-+|+|+.|+|.++|||+||||+|+.+..+|.++||||.|+.|||.++|++|+.||||||||+|-|. +
T Consensus 28 lgi~~g~~~vy~~tnret~vei~~svrgkdvfiiqt~skdvn~~vmellim~yackts~aksiigvipy~pyskqckm-r 106 (354)
T KOG1503|consen 28 LGIELGKATVYQKTNRETRVEIKESVRGKDVFIIQTGSKDVNNDVMELLIMAYACKTSCAKSIIGVIPYLPYSKQCKM-R 106 (354)
T ss_pred hcccccceEEEecCCCceEEEhhhhccCceEEEEEecCcccchHHHHHHHHHHHHhhhhhhceEEEeecCccchhhhh-h
Confidence 689999999999999999999999999999999999999999999999999999999999999999999999999654 5
Q ss_pred CCCchhHHHHHHHHHHhCCCEEEEEecCChhccCccCccCccccccHHHHHHHHhccCCCCCeEEEEeCCCchHHHHHHH
Q 026473 81 GRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFA 160 (238)
Q Consensus 81 ~~~~~~~~~~a~ll~~~g~~~vi~vdlHs~~~~~~f~~~~~~l~~~~~la~~i~~~~~~~~~~viv~pd~g~~~~a~~~a 160 (238)
.+.++..|++|.|+.++|..+++++|||...+|+||++|++|+.++|.+.+||.+..++++|.+||+-.+|..++|..+|
T Consensus 107 krgsiv~klla~mmckaglthlitmdlhqkeiqgff~~pvdnlraspfllqyiqe~ipdyrnavivaksp~~akka~sya 186 (354)
T KOG1503|consen 107 KRGSIVSKLLASMMCKAGLTHLITMDLHQKEIQGFFSIPVDNLRASPFLLQYIQEEIPDYRNAVIVAKSPGVAKKAQSYA 186 (354)
T ss_pred hcccHHHHHHHHHHHhcccceEEeehhhhHhhcceecccccccccCHHHHHHHHHhCccccceEEEecCcchhhHHHhHH
Confidence 67789999999999999999999999999999999999999999999999999998888899999999999999999999
Q ss_pred HHcCCCCEEEEEEEe-----------CCCC---------cEE----------EEEeccCCCCCEEEEEeCcccchHHHHH
Q 026473 161 KKLSDAPLAIVDKRR-----------HGHN---------VAE----------VMNLIGDVKGKVAVMVDDMIDTAGTIAK 210 (238)
Q Consensus 161 ~~l~~~~~~~~~k~r-----------~~~~---------~~~----------~~~~~~~v~gk~vlIVDDii~TG~Tl~~ 210 (238)
++|. +.+++++-.. .+.. ..+ ...+.||+.||-.|+|||+||.-.++.+
T Consensus 187 erlr-lglavihge~k~~e~d~~dgr~spp~~~~~t~~~~~~lp~~~~k~kppltvvgdvggriaimvddiiddvqsfva 265 (354)
T KOG1503|consen 187 ERLR-LGLAVIHGEQKDTESDLVDGRHSPPPVVTATTHPSLELPAQISKEKPPLTVVGDVGGRIAIMVDDIIDDVQSFVA 265 (354)
T ss_pred HHHh-hceeEeeccccccccccccCCcCCCCccccccCccccCchhhcccCCCeEEEeccCceEEEEehhhHHhHHHHHH
Confidence 9987 6666665321 1110 000 0246789999999999999999999999
Q ss_pred HHHHHHHCCCCEEEEEEEcccccCCC
Q 026473 211 GAALLHQEGAREVYACCTHAVFRLDY 236 (238)
Q Consensus 211 a~~~Lk~~Ga~~V~~~~tH~~fs~~~ 236 (238)
|++.||+.||-+|++++|||++|.|+
T Consensus 266 aae~lkergaykiyv~athgllssda 291 (354)
T KOG1503|consen 266 AAEVLKERGAYKIYVMATHGLLSSDA 291 (354)
T ss_pred HHHHHHhcCceEEEEEeecccccccc
Confidence 99999999999999999999999886
No 18
>PF13793 Pribosyltran_N: N-terminal domain of ribose phosphate pyrophosphokinase; PDB: 2JI4_A 1DKU_B 1IBS_B 1DKR_B 3MBI_C 3LRT_B 3LPN_B 3NAG_B 2H07_B 2H06_B ....
Probab=100.00 E-value=2.7e-37 Score=235.98 Aligned_cols=97 Identities=60% Similarity=0.995 Sum_probs=83.2
Q ss_pred CCCceeeeeeeeeCCCceEEEecCCcCCCcEEEEecCCCCCchhHHHHHHHHHHHHhcCCCeEEEEecccCccccccccC
Q 026473 1 MGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVIPYFGYARADRKTQ 80 (238)
Q Consensus 1 l~~~~~~~~~~~F~dGE~~v~i~~~v~g~~v~ivqs~~~~~~~~l~ell~~~~a~~~~~a~~i~~viPY~~YsRqdr~~~ 80 (238)
||++++++++++|||||.+|++++++||+||||||++++|+||++||||++++|+|++||++|++|+|||||+||||+ .
T Consensus 20 L~~~~~~~~~~~F~dGE~~v~i~~~v~g~dv~iiqs~~~~~nd~lmeLll~i~a~r~~~a~~i~~ViPYl~YaRQDr~-~ 98 (116)
T PF13793_consen 20 LGIPLGKVETKRFPDGETYVRIPESVRGKDVFIIQSTSPPVNDNLMELLLLIDALRRAGAKRITLVIPYLPYARQDRR-K 98 (116)
T ss_dssp TTS-EE-EEEEE-TTS-EEEEESS--TTSEEEEE---SSSHHHHHHHHHHHHHHHHHTTBSEEEEEESS-TTTTSSSS-S
T ss_pred hCCceeeeEEEEcCCCCEEEEecccccCCceEEEEecCCchhHHHHHHHHHHHHHHHcCCcEEEEeccchhhhhhccC-C
Confidence 689999999999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred CCCchhHHHHHHHHHHhC
Q 026473 81 GRESIAAKLVANLITEAG 98 (238)
Q Consensus 81 ~~~~~~~~~~a~ll~~~g 98 (238)
+|||+|++.+|+||+++|
T Consensus 99 ~ge~isak~~a~lL~~~G 116 (116)
T PF13793_consen 99 PGEPISAKVVAKLLSAAG 116 (116)
T ss_dssp TTC--HHHHHHHHHHHHT
T ss_pred CCCcchHHHHHHHHHhcC
Confidence 999999999999999987
No 19
>PF14572 Pribosyl_synth: Phosphoribosyl synthetase-associated domain; PDB: 2H07_B 2H06_B 3S5J_B 2HCR_A 3EFH_A 2H08_A 1DKR_B 1DKU_B 1IBS_B 2JI4_A ....
Probab=99.90 E-value=3.5e-24 Score=174.21 Aligned_cols=96 Identities=45% Similarity=0.756 Sum_probs=73.8
Q ss_pred CCCeEEEEeCCCchHHHHHHHHHcCCCCEEEEEEEeCCC-----------C-------------------cEEEEEeccC
Q 026473 140 SNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGH-----------N-------------------VAEVMNLIGD 189 (238)
Q Consensus 140 ~~~~viv~pd~g~~~~a~~~a~~l~~~~~~~~~k~r~~~-----------~-------------------~~~~~~~~~~ 189 (238)
++|.|||+|++||.+||+.+|+.|+ +.++++++.|... . ....+.+.||
T Consensus 2 y~naVIVa~~~g~akRAts~Ad~L~-l~~avih~e~~~~~~~~~~~~~s~p~~~~~~~~~~~~~~~~~~~e~~~~~vVGD 80 (184)
T PF14572_consen 2 YRNAVIVAKDPGGAKRATSFADRLR-LGFAVIHGERRDSESDGVDGRHSPPMSRSAAVSSSEEIPEMTPKEKPPMNVVGD 80 (184)
T ss_dssp GGGEEEEESSGGGHHHHHHHHHHCT--EEEEE------------------------------------------EEEES-
T ss_pred CCCCEEEeCCCCchHhHHHHHHHhC-CCeeEecCccccccccccccccCCCccccccccccchhhhcccCcccceEEEEE
Confidence 4688999999999999999999999 8998888765310 0 0012467899
Q ss_pred CCCCEEEEEeCcccchHHHHHHHHHHHHCCCCEEEEEEEcccccCCC
Q 026473 190 VKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHAVFRLDY 236 (238)
Q Consensus 190 v~gk~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~~fs~~~ 236 (238)
|+||+|||||||||||+|+.++++.||++||++|++++|||+||+++
T Consensus 81 V~gk~~IIvDDiIdtg~Tl~~aA~~Lk~~GA~~V~~~aTHgvfs~~A 127 (184)
T PF14572_consen 81 VKGKICIIVDDIIDTGGTLIKAAELLKERGAKKVYACATHGVFSGDA 127 (184)
T ss_dssp -TTSEEEEEEEEESSTHHHHHHHHHHHHTTESEEEEEEEEE---TTH
T ss_pred ccCCeEeeecccccchHHHHHHHHHHHHcCCCEEEEEEeCcccCchH
Confidence 99999999999999999999999999999999999999999999974
No 20
>PRK13811 orotate phosphoribosyltransferase; Provisional
Probab=99.85 E-value=1.5e-20 Score=153.05 Aligned_cols=136 Identities=29% Similarity=0.378 Sum_probs=111.5
Q ss_pred HHHHHHHHHhCCCEEEEEecCChhccCccCccCccccccHHHHHHHHhccCC-CCCeEEEEeCCCchHHHHHHHHHcCCC
Q 026473 88 KLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLASKTVS-SNDLVVVSPDVGGVARARAFAKKLSDA 166 (238)
Q Consensus 88 ~~~a~ll~~~g~~~vi~vdlHs~~~~~~f~~~~~~l~~~~~la~~i~~~~~~-~~~~viv~pd~g~~~~a~~~a~~l~~~ 166 (238)
..++++|...|+.++.++++||++.++|| +++..+...|.+.+++.+.... .+..+|++|+.||+++|..+|..++ .
T Consensus 3 ~~~~~~l~~~ga~~~g~f~L~SG~~s~~y-~d~~~l~~~p~~~~~l~~~l~~~~~~d~Vvg~~~gGi~~A~~~a~~l~-~ 80 (170)
T PRK13811 3 NTIAELLISYKAIEFGDFTLASGAKSRYY-IDIKTAITHPALLKEIAAEVAKRYDFDVVAGVAVGGVPLAVAVSLAAG-K 80 (170)
T ss_pred HHHHHHHHHCCCEEECCEEEccCCcCCEE-EeCchhccCHHHHHHHHHHHHhhCCCCEEEecCcCcHHHHHHHHHHHC-C
Confidence 46799999999999999999999999887 2344566677777777654311 2345899999999999999999998 8
Q ss_pred CEEEEEEEeCCCCcEEEEEeccCCCCCEEEEEeCcccchHHHHHHHHHHHHCCCCEEEEEE
Q 026473 167 PLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACC 227 (238)
Q Consensus 167 ~~~~~~k~r~~~~~~~~~~~~~~v~gk~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~ 227 (238)
|+.+++|.+...+... ...++++|++|+||||+++||+|+.++++.|+++||+.+.++|
T Consensus 81 p~~~~rK~~k~~g~~~--~~~g~~~g~~VlIVDDvi~TG~T~~~~~~~l~~~Ga~v~~~~~ 139 (170)
T PRK13811 81 PYAIIRKEAKDHGKAG--LIIGDVKGKRVLLVEDVTTSGGSALYGIEQLRAAGAVVDDVVT 139 (170)
T ss_pred CEEEEecCCCCCCCcc--eEEcccCCCEEEEEEecccccHHHHHHHHHHHHCCCeEEEEEE
Confidence 9999998865444322 2346789999999999999999999999999999999877776
No 21
>PRK13812 orotate phosphoribosyltransferase; Provisional
Probab=99.72 E-value=7e-17 Score=132.18 Aligned_cols=135 Identities=17% Similarity=0.232 Sum_probs=103.3
Q ss_pred hHHHHHHHHHHhCCCEEEEEecCChhccCcc-CccCccccc----cHHHHHHHHhccCCCCCeEEEEeCCCchHHHHHHH
Q 026473 86 AAKLVANLITEAGADRVLACDLHSGQSMGYF-DIPVDHVYC----QPVILDYLASKTVSSNDLVVVSPDVGGVARARAFA 160 (238)
Q Consensus 86 ~~~~~a~ll~~~g~~~vi~vdlHs~~~~~~f-~~~~~~l~~----~~~la~~i~~~~~~~~~~viv~pd~g~~~~a~~~a 160 (238)
+.+.+.+.|...|+=+.-.+.+-|++.+.|| +.. .+.. .+.+++++.+... +.++|++|+.||+++|..+|
T Consensus 2 ~~~~l~~~l~~~~a~~~g~f~l~SG~~S~~yid~~--~~~~~p~~~~~i~~~l~~~i~--~~d~ivg~~~ggi~lA~~lA 77 (176)
T PRK13812 2 ATDDLIAALRDADAVQFGEFELSHGGTSEYYVDKY--LFETDPDCLRLIAEAFADRID--EDTKLAGVALGAVPLVAVTS 77 (176)
T ss_pred cHHHHHHHHHHCCCEEeCCEEECcCCcCCEEEeCe--eccCCHHHHHHHHHHHHHHhc--cCCEEEEeecchHHHHHHHH
Confidence 3456788888888766666778888876554 432 2322 3455666655532 23799999999999999999
Q ss_pred HHcCCCCEEEEEEEeCCCCcEEEEEeccCC-CCCEEEEEeCcccchHHHHHHHHHHHHCCCCEEEEEE
Q 026473 161 KKLSDAPLAIVDKRRHGHNVAEVMNLIGDV-KGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACC 227 (238)
Q Consensus 161 ~~l~~~~~~~~~k~r~~~~~~~~~~~~~~v-~gk~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~ 227 (238)
..++ .|+.+.+|.+...+..+. ..+++ +|++|+||||+++||+|+.++++.|+++|++.+.+++
T Consensus 78 ~~l~-~p~~~~rk~~k~yg~~~~--~~g~~~~g~~VlIVDDvitTG~Tl~~~~~~l~~~Ga~vv~~~v 142 (176)
T PRK13812 78 VETG-VPYVIARKQAKEYGTGNR--IEGRLDEGEEVVVLEDIATTGQSAVDAVEALREAGATVNRVLV 142 (176)
T ss_pred HHHC-CCEEEEeccCCcCCCCCe--EEecCCCcCEEEEEEEeeCCCHHHHHHHHHHHHCCCeEEEEEE
Confidence 9999 899999998765443222 33566 8999999999999999999999999999999888776
No 22
>PRK13809 orotate phosphoribosyltransferase; Provisional
Probab=99.68 E-value=1.1e-15 Score=127.83 Aligned_cols=138 Identities=18% Similarity=0.249 Sum_probs=102.0
Q ss_pred HHHHHHHHHhCCCEEEEEecCChhccCcc-CccCccccccHHHHHH----HHhccCCCCCeEEEEeCCCchHHHHHHHHH
Q 026473 88 KLVANLITEAGADRVLACDLHSGQSMGYF-DIPVDHVYCQPVILDY----LASKTVSSNDLVVVSPDVGGVARARAFAKK 162 (238)
Q Consensus 88 ~~~a~ll~~~g~~~vi~vdlHs~~~~~~f-~~~~~~l~~~~~la~~----i~~~~~~~~~~viv~pd~g~~~~a~~~a~~ 162 (238)
+.+.++|...|+=+.-.+-+-|++.+.+| + +..+...|.+.+. +.+.....+.++|++|+.+|+++|..+|.+
T Consensus 11 ~~l~~~l~~~gal~~g~F~L~SG~~S~~y~D--~~~i~~~p~~l~~i~~~l~~~~~~~~~d~IvG~~~~Gi~~A~~vA~~ 88 (206)
T PRK13809 11 DQAVAILYQIGAIKFGKFILASGEETPIYVD--MRLVISSPEVLQTIATLIWRLRPSFNSSLLCGVPYTALTLATSISLK 88 (206)
T ss_pred HHHHHHHHHcCCEEECCEEECCcCCCCEEEE--ChhhccCHHHHHHHHHHHHHHhccCCCCEEEEecCccHHHHHHHHHH
Confidence 44666777788767677888888876554 4 3334334444333 333322234579999999999999999999
Q ss_pred cCCCCEEEEEEEeCCCCcEEEEEeccC-CCCCEEEEEeCcccchHHHHHHHHHHHHCCCCEEEEEEE
Q 026473 163 LSDAPLAIVDKRRHGHNVAEVMNLIGD-VKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCT 228 (238)
Q Consensus 163 l~~~~~~~~~k~r~~~~~~~~~~~~~~-v~gk~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~t 228 (238)
++ .|+.+.+|.++.++........+. .+|++|+||||+++||+|+.++++.|+++|++.+.++|.
T Consensus 89 l~-~p~~~~RK~~K~~G~~~~~~~~g~~~~g~~VlIVDDViTTG~Ti~~a~~~L~~~G~~vv~v~vl 154 (206)
T PRK13809 89 YN-IPMVLRRKELKNVDPSDAIKVEGLFTPGQTCLVINDMVSSGKSIIETAVALEEEGLVVREALVF 154 (206)
T ss_pred hC-CCEEEEeCCCCCCCCcCEEEEccccCCCCEEEEEEeccccCHHHHHHHHHHHHCCCEEEEEEEE
Confidence 98 899999887765554333333444 489999999999999999999999999999997777663
No 23
>TIGR01203 HGPRTase hypoxanthine phosphoribosyltransferase. Sequence differences as small as a single residue can affect whether members of this family act on hypoxanthine and guanine or hypoxanthine only. The designation of this model as equivalog reflects hypoxanthine specificity and does not reflect whether or not guanine can replace hypoxanthine.
Probab=99.67 E-value=6.3e-16 Score=125.46 Aligned_cols=103 Identities=16% Similarity=0.215 Sum_probs=80.2
Q ss_pred ccHHHHHHHHhccCCCCCeEEEEeCCCchHHHHHHHHHcCCCC--EEEEEEE--eCC-C--CcEEE-EEeccCCCCCEEE
Q 026473 125 CQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAP--LAIVDKR--RHG-H--NVAEV-MNLIGDVKGKVAV 196 (238)
Q Consensus 125 ~~~~la~~i~~~~~~~~~~viv~pd~g~~~~a~~~a~~l~~~~--~~~~~k~--r~~-~--~~~~~-~~~~~~v~gk~vl 196 (238)
....+|++|.+.+ ..+++++++|++||+.+|+.+++.|+ .| +.++.-. |.. . +.... .....+++||+|+
T Consensus 11 ~i~~lA~~I~~~~-~~~~~vvv~i~~GG~~~a~~l~~~L~-~~~~v~~i~~~~Y~~~~~~~~~~~~~~~~~~~~~gk~vl 88 (166)
T TIGR01203 11 RIAELAKQITEDY-AGKPLVLLCVLKGSFPFFADLIRYIA-VPVQVDFMAVSSYGNGMQSSGDVKILKDLDLSIKGKDVL 88 (166)
T ss_pred HHHHHHHHHHHHc-CCCCeEEEEEccCCHHHHHHHHHhcC-CCceeeEEEEeeccCCCcccCceEEecCCCCCCCCCEEE
Confidence 4577888887764 34678999999999999999999998 65 4444433 211 1 12222 2345578999999
Q ss_pred EEeCcccchHHHHHHHHHHHHCCCCEEEEEEEc
Q 026473 197 MVDDMIDTAGTIAKGAALLHQEGAREVYACCTH 229 (238)
Q Consensus 197 IVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH 229 (238)
|||||++||+|+.++++.|++.||++|+++|.+
T Consensus 89 ivDDii~TG~Tl~~~~~~l~~~g~~~i~~~~l~ 121 (166)
T TIGR01203 89 IVEDIVDTGLTLQYLLDLLKARKPKSLKIVTLL 121 (166)
T ss_pred EEeeeeCcHHHHHHHHHHHHHCCCCEEEEEEEE
Confidence 999999999999999999999999999999854
No 24
>PRK09162 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=99.65 E-value=1.5e-15 Score=124.99 Aligned_cols=103 Identities=20% Similarity=0.278 Sum_probs=82.0
Q ss_pred ccHHHHHHHHhccCCCCCeEEEEeCCCchHHHHHHHHHcCCCCE--EEEEEEeCCCCc----EEE-EEeccCCCCCEEEE
Q 026473 125 CQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPL--AIVDKRRHGHNV----AEV-MNLIGDVKGKVAVM 197 (238)
Q Consensus 125 ~~~~la~~i~~~~~~~~~~viv~pd~g~~~~a~~~a~~l~~~~~--~~~~k~r~~~~~----~~~-~~~~~~v~gk~vlI 197 (238)
....++++|.+.+ ..+++++|++++||..+|+.+++.|+ .|+ .++.+.|..... ... .....+++||+|||
T Consensus 25 ~i~~la~~i~~~~-~~~~~viV~i~~gg~~~A~~La~~l~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~gk~VLI 102 (181)
T PRK09162 25 AIDRMADEITADL-ADENPLVLCVMGGGLVFTGQLLPRLD-FPLEFDYLHATRYRNETTGGELVWKVKPRESLKGRTVLV 102 (181)
T ss_pred HHHHHHHHHHHHc-CCCCeEEEEECCCcHHHHHHHHHHcC-CCcccCEEEEEecCCCccCCceeEecCCCCCCCCCEEEE
Confidence 4678888888764 34567999999999999999999998 775 456666653321 111 12345789999999
Q ss_pred EeCcccchHHHHHHHHHHHHCCCCEEEEEEEc
Q 026473 198 VDDMIDTAGTIAKGAALLHQEGAREVYACCTH 229 (238)
Q Consensus 198 VDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH 229 (238)
||||+|||.|+.++++.|+++||++|++++..
T Consensus 103 VDDIidTG~Tl~~~~~~Lk~~Ga~~V~~avL~ 134 (181)
T PRK09162 103 VDDILDEGHTLAAIRDRCLEMGAAEVYSAVLV 134 (181)
T ss_pred EccccCcHHHHHHHHHHHHhCCCCEEEEEEEE
Confidence 99999999999999999999999999999854
No 25
>PRK15423 hypoxanthine phosphoribosyltransferase; Provisional
Probab=99.65 E-value=2.8e-15 Score=122.86 Aligned_cols=103 Identities=17% Similarity=0.312 Sum_probs=82.6
Q ss_pred ccHHHHHHHHhccCC-CCCeEEEEeCCCchHHHHHHHHHcCCCC--EEEEEEEeCCC-----CcEEEE-EeccCCCCCEE
Q 026473 125 CQPVILDYLASKTVS-SNDLVVVSPDVGGVARARAFAKKLSDAP--LAIVDKRRHGH-----NVAEVM-NLIGDVKGKVA 195 (238)
Q Consensus 125 ~~~~la~~i~~~~~~-~~~~viv~pd~g~~~~a~~~a~~l~~~~--~~~~~k~r~~~-----~~~~~~-~~~~~v~gk~v 195 (238)
....+|++|.+.+.+ ..+++++++++||+.+|..+++.|+ .| +.+++..+.+. +..++. ....+++||+|
T Consensus 17 ~i~~lA~~I~~~~~~~~~~~vvvgI~~Gg~~fa~~L~~~L~-~~~~v~~l~~ssY~~~~~~~~~v~i~~~~~~~v~gk~V 95 (178)
T PRK15423 17 RIAELGRQITERYKDSGSDMVLVGLLRGSFMFMADLCREVQ-VSHEVDFMTASSYGSGMSTTRDVKILKDLDEDIRGKDV 95 (178)
T ss_pred HHHHHHHHHHHHhcccCCCeEEEEEecCChHHHHHHHHHhC-CCcceeEEEEEEecCCCcccCceEEecCCCCCCCCCEE
Confidence 467788888876532 2468999999999999999999998 66 55777776542 222332 23457899999
Q ss_pred EEEeCcccchHHHHHHHHHHHHCCCCEEEEEEE
Q 026473 196 VMVDDMIDTAGTIAKGAALLHQEGAREVYACCT 228 (238)
Q Consensus 196 lIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~t 228 (238)
||||||+|||.|+.++.+.|++.||++|.+++.
T Consensus 96 LlVDDIiDTG~TL~~l~~~l~~~~~~~v~~avL 128 (178)
T PRK15423 96 LIVEDIIDSGNTLSKVREILSLREPKSLAICTL 128 (178)
T ss_pred EEEeeecCchHHHHHHHHHHHhCCCCEEEEEEE
Confidence 999999999999999999999999999999883
No 26
>PLN02293 adenine phosphoribosyltransferase
Probab=99.63 E-value=6e-15 Score=121.80 Aligned_cols=93 Identities=25% Similarity=0.353 Sum_probs=77.5
Q ss_pred CCeEEEEeCCCchHHHHHHHHHcCCCCEEEEEEEeCCCCcE-----------EEEE-eccCC-CCCEEEEEeCcccchHH
Q 026473 141 NDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVA-----------EVMN-LIGDV-KGKVAVMVDDMIDTAGT 207 (238)
Q Consensus 141 ~~~viv~pd~g~~~~a~~~a~~l~~~~~~~~~k~r~~~~~~-----------~~~~-~~~~v-~gk~vlIVDDii~TG~T 207 (238)
+..+|++|+.+|+++|..+|..|+ .|+.+++|.++..+.. .... ..+.+ +|++|+||||+++||+|
T Consensus 62 ~~d~Ivg~e~~Gi~lA~~lA~~Lg-~p~v~~rK~~k~~~~~~~~~~~~~~g~~~l~l~~~~i~~G~rVlIVDDvitTG~T 140 (187)
T PLN02293 62 GISVVAGIEARGFIFGPPIALAIG-AKFVPLRKPGKLPGEVISEEYVLEYGTDCLEMHVGAVEPGERALVIDDLIATGGT 140 (187)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHC-CCEEEEEecCCCCCceEEEEEeccCCceEEEEEcCccCCCCEEEEEeccccchHH
Confidence 456899999999999999999999 8999999877532211 1111 12556 79999999999999999
Q ss_pred HHHHHHHHHHCCCCEEEEEEEcccccC
Q 026473 208 IAKGAALLHQEGAREVYACCTHAVFRL 234 (238)
Q Consensus 208 l~~a~~~Lk~~Ga~~V~~~~tH~~fs~ 234 (238)
+.++++.|+++|++.+.++|.|.++..
T Consensus 141 ~~~~~~~l~~~Ga~~v~~~~~~~~~~~ 167 (187)
T PLN02293 141 LCAAINLLERAGAEVVECACVIELPEL 167 (187)
T ss_pred HHHHHHHHHHCCCEEEEEEEEEEcCCc
Confidence 999999999999999999999997764
No 27
>COG0634 Hpt Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=99.63 E-value=5.9e-15 Score=118.46 Aligned_cols=101 Identities=21% Similarity=0.326 Sum_probs=83.6
Q ss_pred ccHHHHHHHHhccCCCCCeEEEEeCCCchHHHHHHHHHcCCCC--EEEEEEEeCCC-----CcEEEE-EeccCCCCCEEE
Q 026473 125 CQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAP--LAIVDKRRHGH-----NVAEVM-NLIGDVKGKVAV 196 (238)
Q Consensus 125 ~~~~la~~i~~~~~~~~~~viv~pd~g~~~~a~~~a~~l~~~~--~~~~~k~r~~~-----~~~~~~-~~~~~v~gk~vl 196 (238)
...+++++|.+.+ .++++++|+..+|+++|+..+.+++. .| +.++.-.+.+. +..++. .+..+++||+||
T Consensus 20 ri~ela~~I~~~y-~g~~~~vv~iLkGs~~F~~dL~r~i~-~~~e~dFm~vSSYg~~t~ssg~v~i~kDld~di~grdVL 97 (178)
T COG0634 20 RIKELAAQITEDY-GGKDPLVVGVLKGSFPFMADLIRAID-FPLEVDFMHVSSYGGGTSSSGEVKILKDLDEDIKGRDVL 97 (178)
T ss_pred HHHHHHHHHHHhh-CCCceEEEEEcccchhhHHHHHHhcC-CCceeEEEEEeccCCCcccCCceEEecccccCCCCCeEE
Confidence 3578889998876 45889999999999999999999997 55 45666555432 223332 456789999999
Q ss_pred EEeCcccchHHHHHHHHHHHHCCCCEEEEEE
Q 026473 197 MVDDMIDTAGTIAKGAALLHQEGAREVYACC 227 (238)
Q Consensus 197 IVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~ 227 (238)
|||||+|||.||.++.+.|+.+||+++.+++
T Consensus 98 iVeDIiDsG~TLs~i~~~l~~r~a~sv~i~t 128 (178)
T COG0634 98 IVEDIIDSGLTLSKVRDLLKERGAKSVRIAT 128 (178)
T ss_pred EEecccccChhHHHHHHHHHhCCCCeEEEEE
Confidence 9999999999999999999999999999987
No 28
>PF00156 Pribosyltran: Phosphoribosyl transferase domain; InterPro: IPR000836 The name PRT comes from phosphoribosyltransferase (PRTase) enzymes, which carry out phosphoryl transfer reactions on 5-phosphoribosyl-alpha1-pyrophosphate PRPP, an activated form of ribose-5-phosphate. Members of Phosphoribosyltransferase (PRT) are catalytic and are regulatory proteins involved in nucleotide synthesis and salvage []. This includes a range of diverse phosphoribosyl transferase enzymes including adenine phosphoribosyltransferase (2.4.2.7 from EC); hypoxanthine-guanine-xanthine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase (2.4.2.8 from EC); ribose-phosphate pyrophosphokinase (2.7.6.1 from EC); amidophosphoribosyltransferase (2.4.2.14 from EC); orotate phosphoribosyltransferase (2.4.2.10 from EC);uracil phosphoribosyltransferase (2.4.2.9 from EC); and xanthine-guanine phosphoribosyltransferase (2.4.2.22 from EC). Not all PRT proteins are enzymes. For example, in some bacteria PRT proteins regulate the expression of purine and pyrimidine synthetic genes. Members of PRT are defined by the protein fold and by a short 13-residue sequence motif, The motif consists of four hydrophobic amino acids, two acidic amino acids and seven amino acids of variable character, usually including glycine and threonine. The motif has been predicted to be a PRPP-binding site in advance of structural information [, ]. Apart of this motif, different PRT proteins have a low level of sequence identity, less than 15%. The PRT sequence motif is only found in PRTases from the nucleotide synthesis and salvage pathways. Other PRTases, from the tryptophan, histidine and nicotinamide synthetic and salvage pathways, lack the PRT sequence motif and appear to be unrelated to each other and unrelated to the PRT family.; GO: 0009116 nucleoside metabolic process; PDB: 2JBH_A 1Y0B_D 2FXV_B 1GPH_1 1AO0_D 1ORO_B 1VCH_C 2WNS_A 2PRZ_B 2PS1_A ....
Probab=99.62 E-value=8.1e-15 Score=112.53 Aligned_cols=102 Identities=31% Similarity=0.422 Sum_probs=78.5
Q ss_pred ccHHHHHHHHhccCCCCCeEEEEeCCCchHHHHHHHHHcCCCCEEEEEEEeC----------CCCcEEE-EEeccCCCCC
Q 026473 125 CQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRH----------GHNVAEV-MNLIGDVKGK 193 (238)
Q Consensus 125 ~~~~la~~i~~~~~~~~~~viv~pd~g~~~~a~~~a~~l~~~~~~~~~k~r~----------~~~~~~~-~~~~~~v~gk 193 (238)
....++++|.+.. .+...+++++.||+++|..++..++ .|+.+..+... ....... ......++||
T Consensus 13 ~~~~la~~i~~~~--~~~~~ivgi~~~G~~~a~~la~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk 89 (125)
T PF00156_consen 13 LAERLAEQIKESG--FDFDVIVGIPRGGIPLAAALARALG-IPLVFVRKRKSYYPGSDKTSREKNNQELFIIDKEDIKGK 89 (125)
T ss_dssp HHHHHHHHHHHHT--TTSSEEEEETTTTHHHHHHHHHHHT-HEEEEEEEEEEEESEEEEEEEETEEEEEEEEESSSGTTS
T ss_pred HHHHHHHHHHHhC--CCCCEEEeehhccHHHHHHHHHHhC-CCccceeeeecccccchhhhhccCceEEeecccccccce
Confidence 3566777777764 3445699999999999999999998 78765543211 1111111 2334578999
Q ss_pred EEEEEeCcccchHHHHHHHHHHHHCCCCEEEEEEEc
Q 026473 194 VAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTH 229 (238)
Q Consensus 194 ~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH 229 (238)
+|+||||+++||+|+.++++.|+++|+++|.+++.|
T Consensus 90 ~vliVDDvi~tG~Tl~~~~~~L~~~g~~~v~~~vl~ 125 (125)
T PF00156_consen 90 RVLIVDDVIDTGGTLKEAIELLKEAGAKVVGVAVLV 125 (125)
T ss_dssp EEEEEEEEESSSHHHHHHHHHHHHTTBSEEEEEEEE
T ss_pred eEEEEeeeEcccHHHHHHHHHHHhCCCcEEEEEEEC
Confidence 999999999999999999999999999999999875
No 29
>TIGR01367 pyrE_Therm orotate phosphoribosyltransferase, Thermus family. This model represents a distinct clade of orotate phosphoribosyltransferases. Members include the experimentally determined example from Thermus aquaticus and additional examples from Caulobacter crescentus, Helicobacter pylori, Mesorhizobium loti, and related species.
Probab=99.61 E-value=2.4e-14 Score=118.35 Aligned_cols=131 Identities=18% Similarity=0.247 Sum_probs=91.1
Q ss_pred HHHHHHHhCCCEEEEEecCChhccC-ccCccCcccc--------ccHHHHHHHHhccCCCCCeEEEEeCCCchHHHHHHH
Q 026473 90 VANLITEAGADRVLACDLHSGQSMG-YFDIPVDHVY--------CQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFA 160 (238)
Q Consensus 90 ~a~ll~~~g~~~vi~vdlHs~~~~~-~f~~~~~~l~--------~~~~la~~i~~~~~~~~~~viv~pd~g~~~~a~~~a 160 (238)
+++++...|+=+.-.+.+-|++... ||+. ..+. ....+++++.+. ..+.++|++++.||+++|..++
T Consensus 2 ~~~~~~~~~~~~~g~f~l~sg~~s~~yid~--~~l~~~p~~~~~~~~~La~~i~~~--~~~~d~Ivgi~~gGi~~A~~la 77 (187)
T TIGR01367 2 VLDIYKQAGALHEGHFLLSSGKHSPYFLQS--ATLLEHPEALMELGGELAQKILDY--GLKVDFIVGPAMGGVILGYEVA 77 (187)
T ss_pred HHHHHHHcCCeeeceEEecCCCcCCeeEec--hhhhcCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEccCcHHHHHHHH
Confidence 4566667777555566666665543 4432 1222 233444444332 2356799999999999999999
Q ss_pred HHcCCCCEEEEEEEeCCCCcEEEEEeccCCCCCEEEEEeCcccchHHHHHHHHHHHHCCCCEEEEEEE
Q 026473 161 KKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCT 228 (238)
Q Consensus 161 ~~l~~~~~~~~~k~r~~~~~~~~~~~~~~v~gk~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~t 228 (238)
..++ .|+.+.+|.+ +......-....+|++|+||||+++||+|+.++++.|+++||+.+.+++.
T Consensus 78 ~~L~-~~~i~~~k~~---~~~~~~~~~~l~~G~~VLIVDDIi~TG~Tl~~a~~~l~~~Ga~vv~~~vl 141 (187)
T TIGR01367 78 RQLS-VRSIFAEREG---GGMKLRRGFAVKPGEKFVAVEDVVTTGGSLLEAIRAIEGQGGQVVGLACI 141 (187)
T ss_pred HHhC-CCeEEEEEeC---CcEEEeecccCCCCCEEEEEEeeecchHHHHHHHHHHHHcCCeEEEEEEE
Confidence 9998 8987776554 22222111112489999999999999999999999999999999888773
No 30
>PRK07322 adenine phosphoribosyltransferase; Provisional
Probab=99.60 E-value=1.8e-14 Score=118.27 Aligned_cols=116 Identities=22% Similarity=0.346 Sum_probs=86.6
Q ss_pred hccCccCccCccccccHHHHHHHHhcc---CCCCCeEEEEeCCCchHHHHHHHHHcCCCCEEEEEEEeCCC--Cc-E---
Q 026473 111 QSMGYFDIPVDHVYCQPVILDYLASKT---VSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGH--NV-A--- 181 (238)
Q Consensus 111 ~~~~~f~~~~~~l~~~~~la~~i~~~~---~~~~~~viv~pd~g~~~~a~~~a~~l~~~~~~~~~k~r~~~--~~-~--- 181 (238)
+.++.|+++..++...+.+++.+.+.. ...+..+|++++.||+++|..+|..++ .|+.++.|.+... .. .
T Consensus 19 ~~~~~~~i~~~k~~~dp~l~~~~~~~La~~l~~~~d~Iv~v~~gGiplA~~lA~~L~-~p~~~~~k~~~~~~~~~~~~~~ 97 (178)
T PRK07322 19 RVGPDLAIALFVILGDTELTEAAAEALAKRLPTEVDVLVTPETKGIPLAHALSRRLG-KPYVVARKSRKPYMQDPIIQEV 97 (178)
T ss_pred EeCCCCEEEEEhhhCCHHHHHHHHHHHHHHcCCCCCEEEEeccCCHHHHHHHHHHHC-CCEEEEEEeCCCCCCCceEEEE
Confidence 345566777777777777666665431 122456999999999999999999999 8987777665421 10 0
Q ss_pred --------EEEEe----ccCCCCCEEEEEeCcccchHHHHHHHHHHHHCCCCEEEEEE
Q 026473 182 --------EVMNL----IGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACC 227 (238)
Q Consensus 182 --------~~~~~----~~~v~gk~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~ 227 (238)
+.... ..+++||+|+||||+++||+|+.++++.|+++||+.|.+++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~gk~VLIVDDiitTG~Tl~aa~~~L~~~GA~~V~~~~ 155 (178)
T PRK07322 98 VSITTGKPQLLVLDGADAEKLKGKRVAIVDDVVSTGGTLTALERLVERAGGQVVAKAA 155 (178)
T ss_pred EEEEeccceEEEecCccccccCCCEEEEEeccccccHHHHHHHHHHHHcCCEEEEEEE
Confidence 00111 12468999999999999999999999999999999998877
No 31
>PRK08525 amidophosphoribosyltransferase; Provisional
Probab=99.59 E-value=9.6e-15 Score=135.34 Aligned_cols=107 Identities=29% Similarity=0.377 Sum_probs=77.9
Q ss_pred HHHHHHHhccCCCCCeEEEEeCCCchHHHHHHHHHcCCCCE--EEEEEEeCCC-----Cc------EEE-EEecc-CCCC
Q 026473 128 VILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPL--AIVDKRRHGH-----NV------AEV-MNLIG-DVKG 192 (238)
Q Consensus 128 ~la~~i~~~~~~~~~~viv~pd~g~~~~a~~~a~~l~~~~~--~~~~k~r~~~-----~~------~~~-~~~~~-~v~g 192 (238)
.+.+.|.+......+.++..|+ +|..+|..+|+.++ +|+ .+++|++... .+ ... ....+ .++|
T Consensus 263 ~~G~~La~~~~~~~d~Vv~vPd-~g~~~A~~~A~~lg-ip~~~~l~rk~~~~r~~i~~~qr~rn~~~~~~~~~~~~~v~g 340 (445)
T PRK08525 263 KMGEELAKKFPIKADFVVPVPD-SGVPAAIGYAQESG-IPFEMAIVRNHYVGRTFIEPTQEMRNLKVKLKLNPMSKVLEG 340 (445)
T ss_pred HHHHHHHHHhcccCCeEEECCc-hHHHHHHHHHHHhC-CCccceEEEeeccccccCCHHHHHHhhheeEEecccccccCC
Confidence 4555555443222345666666 56999999999999 887 4555543211 10 111 12223 4899
Q ss_pred CEEEEEeCcccchHHHHHHHHHHHHCCCCEEEEEEEcccccCCC
Q 026473 193 KVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHAVFRLDY 236 (238)
Q Consensus 193 k~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~~fs~~~ 236 (238)
|+|+||||+++||+|+.++++.|+++||++|++++|||+|+++.
T Consensus 341 K~VlLVDDvitTG~Tl~~a~~~Lr~aGA~~V~v~~~hp~~~~~~ 384 (445)
T PRK08525 341 KRIVVIDDSIVRGTTSKKIVSLLRAAGAKEIHLRIACPEIKFPC 384 (445)
T ss_pred CeEEEEecccCcHHHHHHHHHHHHhcCCCEEEEEEECCCcCCch
Confidence 99999999999999999999999999999999999999999853
No 32
>PRK02304 adenine phosphoribosyltransferase; Provisional
Probab=99.58 E-value=3.3e-14 Score=116.31 Aligned_cols=109 Identities=20% Similarity=0.229 Sum_probs=80.1
Q ss_pred cccccHHHHHHHHh----ccCCCCCeEEEEeCCCchHHHHHHHHHcCCCCEEEEEEEeCCCCcE-----------EEEEe
Q 026473 122 HVYCQPVILDYLAS----KTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVA-----------EVMNL 186 (238)
Q Consensus 122 ~l~~~~~la~~i~~----~~~~~~~~viv~pd~g~~~~a~~~a~~l~~~~~~~~~k~r~~~~~~-----------~~~~~ 186 (238)
++...|.+.+++.+ .+.+.+.++|++|+.||+.+|..+|..++ .|+.+++|.+...... +...+
T Consensus 28 ~l~~~p~~~~~~~~~la~~~~~~~~d~Ivgv~~~Gi~~a~~la~~l~-~p~~~~rk~~~~~~~~~~~~~~~~~~~~~l~l 106 (175)
T PRK02304 28 PLLADPEAFREVIDALVERYKDADIDKIVGIEARGFIFGAALAYKLG-IGFVPVRKPGKLPRETISESYELEYGTDTLEI 106 (175)
T ss_pred hHhcCHHHHHHHHHHHHHHhccCCCCEEEEEccchHHHHHHHHHHhC-CCEEEEEcCCCCCCceEeEEEecccCceEEEE
Confidence 34334544444433 32222457999999999999999999998 8998887765321110 11122
Q ss_pred cc--CCCCCEEEEEeCcccchHHHHHHHHHHHHCCCCEEEEEEEccc
Q 026473 187 IG--DVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHAV 231 (238)
Q Consensus 187 ~~--~v~gk~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~~ 231 (238)
.+ .++|++|+||||+++||+|+.++++.|+++||+.+.++|.+..
T Consensus 107 ~~~~~~~g~~VLIVDDivtTG~Tl~~~~~~l~~~Ga~~v~v~vl~~~ 153 (175)
T PRK02304 107 HKDAIKPGDRVLIVDDLLATGGTLEAAIKLLERLGAEVVGAAFVIEL 153 (175)
T ss_pred chhhcCCCCEEEEEeCCccccHHHHHHHHHHHHcCCEEEEEEEEEEc
Confidence 22 3789999999999999999999999999999999999986653
No 33
>PLN02238 hypoxanthine phosphoribosyltransferase
Probab=99.58 E-value=3.4e-14 Score=117.62 Aligned_cols=101 Identities=27% Similarity=0.370 Sum_probs=80.3
Q ss_pred ccHHHHHHHHhccCCCCCeEEEEeCCCchHHHHHHHHHcCCC---CE--EEEEEEeCCC-----CcEEEE--EeccCCCC
Q 026473 125 CQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDA---PL--AIVDKRRHGH-----NVAEVM--NLIGDVKG 192 (238)
Q Consensus 125 ~~~~la~~i~~~~~~~~~~viv~pd~g~~~~a~~~a~~l~~~---~~--~~~~k~r~~~-----~~~~~~--~~~~~v~g 192 (238)
....+|++|.+.+ ...+++++++.+||+.+|..+++.|+ . |+ .+++..+... +..++. ....+++|
T Consensus 20 ~i~~lA~~I~~~~-~~~~~vivgi~~Gg~~fa~~L~~~L~-~~~~~~~i~fi~~~sy~~~~~~~g~~~i~~~~~~~~v~g 97 (189)
T PLN02238 20 RVAELAAQIASDY-AGKSPVVLGVATGAFMFLADLVRAIQ-PLPRGLTVDFIRASSYGGGTESSGVAKVSGADLKIDVKG 97 (189)
T ss_pred HHHHHHHHHHHHc-CCCCcEEEEEccCCHHHHHHHHHHhC-ccCCCeEEEEEEeeecCCCccccCceeEecCCCCCCCCC
Confidence 3566888888764 34568999999999999999999998 5 54 4566555432 122222 23357899
Q ss_pred CEEEEEeCcccchHHHHHHHHHHHHCCCCEEEEEE
Q 026473 193 KVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACC 227 (238)
Q Consensus 193 k~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~ 227 (238)
|+|+|||||+|||.|+.++++.|++.||++|.++|
T Consensus 98 k~VliVDDIidTG~Tl~~~~~~l~~~g~~~v~~av 132 (189)
T PLN02238 98 KHVLLVEDIVDTGNTLSALVAHLEAKGAASVSVCA 132 (189)
T ss_pred CEEEEEecccchHHHHHHHHHHHHhCCCCEEEEEE
Confidence 99999999999999999999999999999999998
No 34
>PRK05205 bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase; Provisional
Probab=99.57 E-value=3.4e-14 Score=116.31 Aligned_cols=105 Identities=23% Similarity=0.285 Sum_probs=78.7
Q ss_pred ccHHHHHHHHhccCCCCCeEEEEeCCCchHHHHHHHHHcC---CCC--EEEEEEE--eCCC---CcEE-E--EEeccCCC
Q 026473 125 CQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLS---DAP--LAIVDKR--RHGH---NVAE-V--MNLIGDVK 191 (238)
Q Consensus 125 ~~~~la~~i~~~~~~~~~~viv~pd~g~~~~a~~~a~~l~---~~~--~~~~~k~--r~~~---~~~~-~--~~~~~~v~ 191 (238)
....+++++.+.+.+.++++++++++||+.++..+++.|+ +.| +.++... |... +... . ..+.++++
T Consensus 15 ~i~~la~~i~~~~~~~~~~viv~il~gG~~~a~~La~~L~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~l~~~v~ 94 (176)
T PRK05205 15 ALTRIAHEIIERNKGLDNLVLVGIKTRGVWLAERLAERLEQLEGVDVPVGELDITLYRDDLTKKGLHPQVKPTDIPFDIE 94 (176)
T ss_pred HHHHHHHHHHHHcCCCCCeEEEEEccCCHHHHHHHHHHHHHHcCCCCccceEEEEEeecCccccCcccccccccCCCCCC
Confidence 3567788887654333578999999999999999999994 133 4555433 4321 1111 1 23456799
Q ss_pred CCEEEEEeCcccchHHHHHHHHHHHHCC-CCEEEEEEEc
Q 026473 192 GKVAVMVDDMIDTAGTIAKGAALLHQEG-AREVYACCTH 229 (238)
Q Consensus 192 gk~vlIVDDii~TG~Tl~~a~~~Lk~~G-a~~V~~~~tH 229 (238)
||+|||||||+|||+|+.++++.|++.| +++|.+++..
T Consensus 95 gr~VLIVDDIidTG~Tl~~~~~~L~~~G~~~~v~~avL~ 133 (176)
T PRK05205 95 GKRVILVDDVLYTGRTIRAALDALFDYGRPARVQLAVLV 133 (176)
T ss_pred CCEEEEEecccCcHHHHHHHHHHHHhcCCCcEEEEEEEE
Confidence 9999999999999999999999999999 7899888854
No 35
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=99.57 E-value=7.9e-14 Score=115.13 Aligned_cols=137 Identities=23% Similarity=0.356 Sum_probs=101.5
Q ss_pred hHHHHHHHHHHhCCCEEEEEecCChhccCcc-CccCccccccHHHHHHHH----hccCCCCCeEEEEeCCCchHHHHHHH
Q 026473 86 AAKLVANLITEAGADRVLACDLHSGQSMGYF-DIPVDHVYCQPVILDYLA----SKTVSSNDLVVVSPDVGGVARARAFA 160 (238)
Q Consensus 86 ~~~~~a~ll~~~g~~~vi~vdlHs~~~~~~f-~~~~~~l~~~~~la~~i~----~~~~~~~~~viv~pd~g~~~~a~~~a 160 (238)
..+.+.++|...|+-+.-.+-+-|++...+| | ...+...|.+.+.+. +...+.+-..|++|..+|+++|..+|
T Consensus 15 ~~~~l~~~l~~~ga~~~g~F~L~SG~~s~~yiD--~~~~~~~p~~~~~i~~~la~~~~~~~~d~I~g~~~~GiplA~~vA 92 (187)
T PRK13810 15 QKQELIAALKACGAVRYGDFTLSSGKKSKYYID--IKKASTDPKTLKLIARQAALRIKEMDVDTVAGVELGGVPLATAVS 92 (187)
T ss_pred HHHHHHHHHHHCCCeEecCEEEcCCCcCCEEEE--CchhcCCHHHHHHHHHHHHHHhccCCCCEEEEEccchHHHHHHHH
Confidence 3445778888888766667777888876554 4 334444455444443 33322344689999999999999999
Q ss_pred HHcCCCCEEEEEEEeCCCCcEEEEEeccCC-CCCEEEEEeCcccchHHHHHHHHHHHHCCCCEEEEEE
Q 026473 161 KKLSDAPLAIVDKRRHGHNVAEVMNLIGDV-KGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACC 227 (238)
Q Consensus 161 ~~l~~~~~~~~~k~r~~~~~~~~~~~~~~v-~gk~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~ 227 (238)
.+++ .|+.+++|.....+.... ..+.+ +|++|+||||+++||+|+.++++.++++|+..+.+++
T Consensus 93 ~~l~-~p~v~vRK~~k~~g~~~~--~~g~~~~g~rVlIVDDVitTGgS~~~~i~~l~~~Ga~V~~v~v 157 (187)
T PRK13810 93 LETG-LPLLIVRKSVKDYGTGSR--FVGDLKPEDRIVMLEDVTTSGGSVREAIEVVREAGAYIKYVIT 157 (187)
T ss_pred HHhC-CCEEEEecCCCccCCCce--EEccCCCcCEEEEEEeccCCChHHHHHHHHHHHCCCEEEEEEE
Confidence 9999 999999887654433221 23443 7999999999999999999999999999999877776
No 36
>PRK00455 pyrE orotate phosphoribosyltransferase; Validated
Probab=99.56 E-value=5.9e-14 Score=117.36 Aligned_cols=139 Identities=24% Similarity=0.320 Sum_probs=95.4
Q ss_pred hHHHHHHHHHHhCCCEEEEEecCChhccC-ccCcc--Ccccc----ccHHHHHHHHhccCCCCCeEEEEeCCCchHHHHH
Q 026473 86 AAKLVANLITEAGADRVLACDLHSGQSMG-YFDIP--VDHVY----CQPVILDYLASKTVSSNDLVVVSPDVGGVARARA 158 (238)
Q Consensus 86 ~~~~~a~ll~~~g~~~vi~vdlHs~~~~~-~f~~~--~~~l~----~~~~la~~i~~~~~~~~~~viv~pd~g~~~~a~~ 158 (238)
..+.+++.|...|+=+.-.+-+-|++... ||+.. ..+-. ....+++.+.+.. .+..+|++++.||+++|..
T Consensus 4 ~~~~~~~~~~~~~a~~~G~f~l~SG~~s~~y~d~~~i~~~p~~~~~~~~~la~~i~~~~--~~~d~Ivgi~~gG~~~A~~ 81 (202)
T PRK00455 4 YAREFIEFLLEIGALLFGHFTLSSGRKSPYYFDCRKLLSYPEALALLGRFLAEAIKDSG--IEFDVVAGPATGGIPLAAA 81 (202)
T ss_pred HHHHHHHHHHHcCCeeCCCEEECCCCcCCeeEeChhhhcCHHHHHHHHHHHHHHHHhcC--CCCCEEEecccCcHHHHHH
Confidence 45667888888776433334445555543 33431 11111 2233444444321 1445899999999999999
Q ss_pred HHHHcCCCCEEEEEEEeCCCCcEEEEEecc-CCCCCEEEEEeCcccchHHHHHHHHHHHHCCCCEEEEEEEc
Q 026473 159 FAKKLSDAPLAIVDKRRHGHNVAEVMNLIG-DVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTH 229 (238)
Q Consensus 159 ~a~~l~~~~~~~~~k~r~~~~~~~~~~~~~-~v~gk~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH 229 (238)
+|..|+ .|+.+.+|.+...+... .+.+ ..+|++|+||||+++||+|+.++++.|+++||+.+.++|..
T Consensus 82 la~~L~-~~~~~~rk~~~~~g~~~--~~~~~~~~g~~VliVDDvi~tG~Tl~~~~~~l~~~Ga~~v~~~vlv 150 (202)
T PRK00455 82 VARALD-LPAIFVRKEAKDHGEGG--QIEGRRLFGKRVLVVEDVITTGGSVLEAVEAIRAAGAEVVGVAVIV 150 (202)
T ss_pred HHHHhC-CCEEEEecccCCCCCCc--eEEccCCCCCEEEEEecccCCcHHHHHHHHHHHHcCCEEEEEEEEE
Confidence 999998 89988887654332211 1222 45899999999999999999999999999999998888854
No 37
>TIGR01090 apt adenine phosphoribosyltransferase. A phylogenetic analysis suggested omitting the bi-directional best hit homologs from the spirochetes from the seed for this model and making only tentative predictions of adenine phosphoribosyltransferase function for this lineage.
Probab=99.52 E-value=1.7e-13 Score=111.45 Aligned_cols=99 Identities=23% Similarity=0.293 Sum_probs=72.7
Q ss_pred HHHHHHhccCCCCCeEEEEeCCCchHHHHHHHHHcCCCCEEEEEEEeCCCCc-----------EEEEEe--ccCCCCCEE
Q 026473 129 ILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNV-----------AEVMNL--IGDVKGKVA 195 (238)
Q Consensus 129 la~~i~~~~~~~~~~viv~pd~g~~~~a~~~a~~l~~~~~~~~~k~r~~~~~-----------~~~~~~--~~~v~gk~v 195 (238)
+++.+.+++.+.+..+|++|+.+|+.+|..++..|+ .|+..++|.+..... ...... ....+||+|
T Consensus 34 ~~~~la~~i~~~~~d~ivgi~~~G~~~A~~la~~L~-~~~~~i~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~V 112 (169)
T TIGR01090 34 LIDLLVERYKDANIDYIVGPEARGFIFGAALAYKLG-VGFVPVRKPGKLPGETISASYDLEYGKDQLEIHKDAIKPGQRV 112 (169)
T ss_pred HHHHHHHHhccCCCCEEEeehhccHHHHHHHHHHHC-CCEEEEEeCCCCCCceeeeEEeeccCceEEEEehhhcCCcCEE
Confidence 333343333223456999999999999999999998 898776655421110 011111 123599999
Q ss_pred EEEeCcccchHHHHHHHHHHHHCCCCEEEEEEE
Q 026473 196 VMVDDMIDTAGTIAKGAALLHQEGAREVYACCT 228 (238)
Q Consensus 196 lIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~t 228 (238)
+||||+++||+|+.++++.|+++||+.+.+++.
T Consensus 113 LIVDDIitTG~Tl~~a~~~L~~~Ga~~v~~~~l 145 (169)
T TIGR01090 113 LIVDDLLATGGTAEATDELIRKLGGEVVEAAFL 145 (169)
T ss_pred EEEeccccchHHHHHHHHHHHHcCCEEEEEEEE
Confidence 999999999999999999999999999888874
No 38
>PRK12560 adenine phosphoribosyltransferase; Provisional
Probab=99.52 E-value=1.4e-13 Score=113.72 Aligned_cols=122 Identities=20% Similarity=0.192 Sum_probs=88.0
Q ss_pred EEEEEecCChhccCccCccCccccccHHHHH----HHHhccCCCCCeEEEEeCCCchHHHHHHHHHcCCCCEEEEEEEeC
Q 026473 101 RVLACDLHSGQSMGYFDIPVDHVYCQPVILD----YLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRH 176 (238)
Q Consensus 101 ~vi~vdlHs~~~~~~f~~~~~~l~~~~~la~----~i~~~~~~~~~~viv~pd~g~~~~a~~~a~~l~~~~~~~~~k~r~ 176 (238)
+++.--+|+.....|+++ ..+.. |.+.+ .+.+.. +.+..+|++|+.||+++|..+|..++ .|+.+++|.|.
T Consensus 11 ~~~~~~~~~~~~~~~~D~--~~~l~-P~~l~~~~~~l~~~~-~~~~D~Ivg~e~~Gi~lA~~vA~~l~-~p~~~~rk~~~ 85 (187)
T PRK12560 11 RVVNSGKALTTVNEFTDQ--LPALR-PKVLKETAKEIIKYI-DKDIDKIVTEEDKGAPLATPVSLLSG-KPLAMARWYPY 85 (187)
T ss_pred CccCCCCCCCcceeEEeC--hhhcC-HHHHHHHHHHHHHHh-CCCCCEEEEEccccHHHHHHHHHhhC-CCEEEeccCCC
Confidence 556655666665566653 23333 43333 444433 44557999999999999999999998 89998888764
Q ss_pred CCCc------------EE-EEEeccCCCCCEEEEEeCcccchHHHHHHHHHHHHCCCCEEEEEE
Q 026473 177 GHNV------------AE-VMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACC 227 (238)
Q Consensus 177 ~~~~------------~~-~~~~~~~v~gk~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~ 227 (238)
.... .+ .....+..+|++|+||||+++||+|+.++++.++++||..+.++|
T Consensus 86 ~~~~~~~~~~~~~~~~~eg~~~~~~~~~G~rVlIVDDvitTG~T~~~ai~ll~~aGa~vv~v~~ 149 (187)
T PRK12560 86 SLSELNYNVVEIGSEYFEGVVYLNGIEKGDRVAIIDDTLSTGGTVIALIKAIENSGGIVSDVIC 149 (187)
T ss_pred cccceeEEeeeeeccceeeeeEccCCCCcCEEEEEEeccccCHHHHHHHHHHHHCCCEEEEEEE
Confidence 3211 11 012233468999999999999999999999999999999888776
No 39
>TIGR00336 pyrE orotate phosphoribosyltransferase. The conserved Lys (K) residue at position 101 of the seed alignment has been proposed as the active site for the enzyme.
Probab=99.52 E-value=1.3e-13 Score=112.69 Aligned_cols=84 Identities=26% Similarity=0.444 Sum_probs=69.8
Q ss_pred CCeEEEEeCCCchHHHHHHHHHcCCCC-----EEEEEEEeCCCCcEEEEEeccCC-CCCEEEEEeCcccchHHHHHHHHH
Q 026473 141 NDLVVVSPDVGGVARARAFAKKLSDAP-----LAIVDKRRHGHNVAEVMNLIGDV-KGKVAVMVDDMIDTAGTIAKGAAL 214 (238)
Q Consensus 141 ~~~viv~pd~g~~~~a~~~a~~l~~~~-----~~~~~k~r~~~~~~~~~~~~~~v-~gk~vlIVDDii~TG~Tl~~a~~~ 214 (238)
+..+|++|+.||+++|..+|..++ .| +.+.+|.+...+... ...+.+ +|++|+||||+++||+|+.++++.
T Consensus 54 ~~d~Ivg~~~gG~~~A~~la~~l~-~~~~~~~~~~~rk~~k~~g~~~--~~~g~~~~g~~VlIVDDvi~TG~Tl~~a~~~ 130 (173)
T TIGR00336 54 EFDVIAGPALGGIPIATAVSVKLA-KPGGDIPLCFNRKEAKDHGEGG--NIEGELLEGDKVVVVEDVITTGTSILEAVEI 130 (173)
T ss_pred CCCEEEccccChHHHHHHHHHHhc-CcCCCceEEEEcCCcccCCCCC--ceecCCCCCCEEEEEeccccChHHHHHHHHH
Confidence 467999999999999999999998 88 777777664433211 123444 899999999999999999999999
Q ss_pred HHHCCCCEEEEEE
Q 026473 215 LHQEGAREVYACC 227 (238)
Q Consensus 215 Lk~~Ga~~V~~~~ 227 (238)
|+++|++.+.++|
T Consensus 131 l~~~Ga~v~~~~v 143 (173)
T TIGR00336 131 IQAAGGQVAGVII 143 (173)
T ss_pred HHHcCCeEEEEEE
Confidence 9999999888777
No 40
>PTZ00271 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=99.51 E-value=2.8e-13 Score=113.64 Aligned_cols=103 Identities=15% Similarity=0.207 Sum_probs=80.1
Q ss_pred ccHHHHHHHHhccCC-----CCCeEEEEeCCCchHHHHHHHHHcC--CCC--EEEEEEEeCCC-----CcEEEE-EeccC
Q 026473 125 CQPVILDYLASKTVS-----SNDLVVVSPDVGGVARARAFAKKLS--DAP--LAIVDKRRHGH-----NVAEVM-NLIGD 189 (238)
Q Consensus 125 ~~~~la~~i~~~~~~-----~~~~viv~pd~g~~~~a~~~a~~l~--~~~--~~~~~k~r~~~-----~~~~~~-~~~~~ 189 (238)
+...+|++|.+.+.+ .++++++++.+||+.+|..++++|+ ..| +.+++-.+.+. +..++. .+..+
T Consensus 36 ~i~~LA~~I~~~~~~~~~~~~~~~vivgVlkGg~~fa~dL~r~L~~~~~~~~vdfi~vssY~~~~~s~g~~~i~~~~~~~ 115 (211)
T PTZ00271 36 ATAKCAKKIAEDYRSFKLTTENPLYLLCVLKGSFIFTADLARFLADEGVPVKVEFICASSYGTGVETSGQVRMLLDVRDS 115 (211)
T ss_pred HHHHHHHHHHHHhhhccccCCCCeEEEEEcCCCHHHHHHHHHHhcccCCCeeEEEEEEEecCCCCcccCceEEecCCCCC
Confidence 467888888876531 3467999999999999999999995 134 45665444321 222222 34457
Q ss_pred CCCCEEEEEeCcccchHHHHHHHHHHHHCCCCEEEEEE
Q 026473 190 VKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACC 227 (238)
Q Consensus 190 v~gk~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~ 227 (238)
++||+|||||||+|||.||.++.+.|++.||++|.+++
T Consensus 116 i~gk~VLIVDDIvDTG~TL~~v~~~l~~~~p~svk~av 153 (211)
T PTZ00271 116 VENRHILIVEDIVDSAITLQYLMRFMLAKKPASLKTVV 153 (211)
T ss_pred CCCCEEEEEecccCCHHHHHHHHHHHHhcCCCEEEEEE
Confidence 99999999999999999999999999999999999998
No 41
>PRK02277 orotate phosphoribosyltransferase-like protein; Provisional
Probab=99.50 E-value=2.7e-13 Score=113.26 Aligned_cols=87 Identities=28% Similarity=0.349 Sum_probs=70.1
Q ss_pred CCeEEEEeCCCchHHHHHHHHHcCCCCEEEEEEEeCCCCc---EE--EEEeccCCCCCEEEEEeCcccchHHHHHHHHHH
Q 026473 141 NDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNV---AE--VMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALL 215 (238)
Q Consensus 141 ~~~viv~pd~g~~~~a~~~a~~l~~~~~~~~~k~r~~~~~---~~--~~~~~~~v~gk~vlIVDDii~TG~Tl~~a~~~L 215 (238)
+..+|++++.||+++|..+|..|+ .|+.+.++.+...+. .+ .....++++||+|+||||+++||+|+.++++.|
T Consensus 85 ~~D~Ivgi~~gG~~~A~~lA~~L~-~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~gk~VlIVDDVitTG~Tl~~ai~~l 163 (200)
T PRK02277 85 EVDVVVGIAKSGVPLATLVADELG-KDLAIYHPKKWDHGEGEKKTGSFSRNFASVEGKRCVIVDDVITSGTTMKETIEYL 163 (200)
T ss_pred CCCEEEeeccCCHHHHHHHHHHhC-CCcEEEecccccccccccccceeccccccCCcCEEEEEeeccCchHHHHHHHHHH
Confidence 446999999999999999999998 898777655432211 11 111124689999999999999999999999999
Q ss_pred HHCCCCEEEEEEE
Q 026473 216 HQEGAREVYACCT 228 (238)
Q Consensus 216 k~~Ga~~V~~~~t 228 (238)
+++||+.+.++|.
T Consensus 164 ~~~Ga~~v~v~vl 176 (200)
T PRK02277 164 KEHGGKPVAVVVL 176 (200)
T ss_pred HHcCCEEEEEEEE
Confidence 9999999998883
No 42
>PRK05793 amidophosphoribosyltransferase; Provisional
Probab=99.49 E-value=2.3e-13 Score=126.84 Aligned_cols=107 Identities=21% Similarity=0.200 Sum_probs=77.8
Q ss_pred HHHHHHHHhccCCCCCeEEEEeCCCchHHHHHHHHHcCCCCEEE-EEEEeCC--------------CCcEEEEEeccCCC
Q 026473 127 PVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAI-VDKRRHG--------------HNVAEVMNLIGDVK 191 (238)
Q Consensus 127 ~~la~~i~~~~~~~~~~viv~pd~g~~~~a~~~a~~l~~~~~~~-~~k~r~~--------------~~~~~~~~~~~~v~ 191 (238)
..+.+.|.+... .+..+|++...+|..+|..+|+.++ +|+.. +.+.|.. ....+.....++++
T Consensus 275 ~~~G~~La~~~~-~~~D~Vv~vPdsg~~~A~~~A~~lg-ip~~~~l~r~~~~~rtfi~~~q~~R~~~~~~k~~~~~~~v~ 352 (469)
T PRK05793 275 VRAGRQLYKEYP-VDADIVIGVPDSGIPAAIGYAEASG-IPYGIGFIKNKYVGRTFIAPSQELRERAVRVKLNPLKVNVE 352 (469)
T ss_pred HHHHHHHHHhcC-CCCCEEEEcCccHHHHHHHHHHHhC-CCEeeeEEEeeeccccccChhHhhhhhhheEecccCccccC
Confidence 355566655532 2333555555557999999999999 89854 2333310 01111112335689
Q ss_pred CCEEEEEeCcccchHHHHHHHHHHHHCCCCEEEEEEEcccccCC
Q 026473 192 GKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHAVFRLD 235 (238)
Q Consensus 192 gk~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~~fs~~ 235 (238)
||+|+||||+++||+|+.++++.|+++||++|+++++||.|..+
T Consensus 353 gk~VlLVDD~ItTGtTl~~~~~~Lr~aGAk~V~~~~~~p~~~~p 396 (469)
T PRK05793 353 GKRVVLIDDSIVRGTTSKRLVELLRKAGAKEVHFRVSSPPVKYP 396 (469)
T ss_pred CCEEEEEccccCchHHHHHHHHHHHHcCCCEEEEEEECCCcCcc
Confidence 99999999999999999999999999999999999999999874
No 43
>PRK00129 upp uracil phosphoribosyltransferase; Reviewed
Probab=99.49 E-value=3.2e-13 Score=113.52 Aligned_cols=88 Identities=23% Similarity=0.391 Sum_probs=76.3
Q ss_pred CCeEEEEeCCCchHHHHHHHHHcCCCCEEEEEEEeCCCCc--EE-EEEeccCCCCCEEEEEeCcccchHHHHHHHHHHHH
Q 026473 141 NDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNV--AE-VMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQ 217 (238)
Q Consensus 141 ~~~viv~pd~g~~~~a~~~a~~l~~~~~~~~~k~r~~~~~--~~-~~~~~~~v~gk~vlIVDDii~TG~Tl~~a~~~Lk~ 217 (238)
+++++|++++||+.++..+++.++.+++.++.++|+..+. .. ...++.+++||+|||+|||++||+|+..+++.|++
T Consensus 70 ~~~vvV~IlrgG~~~~~~l~~~l~~~~~~~i~~~r~~~t~~~~~~~~~lp~~i~~~~VllvDd~laTG~Tl~~ai~~L~~ 149 (209)
T PRK00129 70 KKLVIVPILRAGLGMVDGVLKLIPSARVGHIGLYRDEETLEPVEYYVKLPEDIDERTVIVVDPMLATGGSAIAAIDLLKK 149 (209)
T ss_pred CeEEEEEEeCCCHHHHHHHHHhCCcCeeeeEEEEeCCCCCCCEEEEeeCCCcCCCCEEEEECCcccchHHHHHHHHHHHH
Confidence 4689999999999999999999986788888888864321 11 23567789999999999999999999999999999
Q ss_pred CCCCEEEEEEE
Q 026473 218 EGAREVYACCT 228 (238)
Q Consensus 218 ~Ga~~V~~~~t 228 (238)
+|+++|.++|.
T Consensus 150 ~G~~~I~~~~l 160 (209)
T PRK00129 150 RGAKNIKVLCL 160 (209)
T ss_pred cCCCEEEEEEE
Confidence 99999999986
No 44
>PTZ00149 hypoxanthine phosphoribosyltransferase; Provisional
Probab=99.49 E-value=4.6e-13 Score=114.25 Aligned_cols=103 Identities=17% Similarity=0.170 Sum_probs=79.5
Q ss_pred ccHHHHHHHHhccCCCCCeEEEEeCCCchHHHHHHHHHcCC----------CCE---EEEEEEeCCC----CcEEEE-Ee
Q 026473 125 CQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSD----------APL---AIVDKRRHGH----NVAEVM-NL 186 (238)
Q Consensus 125 ~~~~la~~i~~~~~~~~~~viv~pd~g~~~~a~~~a~~l~~----------~~~---~~~~k~r~~~----~~~~~~-~~ 186 (238)
....+|++|.+.+ ..++++++++.+||+.|+..+.+.|.. .+. .+++-.+... +..++. ..
T Consensus 66 rI~~LA~~I~~dy-~~~~~vilgILkGg~~FaadL~~~L~~~~~~~~~~~~~~~~~~dfi~vsSY~~~~s~g~v~i~~~~ 144 (241)
T PTZ00149 66 RVEKLAYDIKQVY-GNEELHILCILKGSRGFFSALVDYLNRIHNYSSTESPKPPYQEHYVRVKSYCNDESTGKLEIVSDD 144 (241)
T ss_pred HHHHHHHHHHHHc-CCCCeEEEEECCCCHHHHHHHHHHHhhhhhccccccCcccccccEEEEEEccCCCcCCceEEeccc
Confidence 4677888888765 467899999999999999999998862 123 5555433321 222322 22
Q ss_pred ccCCCCCEEEEEeCcccchHHHHHHHHHHHHCCCCEEEEEEE
Q 026473 187 IGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCT 228 (238)
Q Consensus 187 ~~~v~gk~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~t 228 (238)
..+++||+|||||||+|||.|+.++.+.|++.|+++|.++|.
T Consensus 145 ~~~l~gk~VLIVDDIidTG~Tl~~~~~~L~~~g~~~V~va~L 186 (241)
T PTZ00149 145 LSCLKDKHVLIVEDIIDTGNTLVKFCEYLKKFEPKTIRIATL 186 (241)
T ss_pred ccccCCCEEEEEEeEeChHHHHHHHHHHHHhcCCCEEEEEEE
Confidence 346899999999999999999999999999999999999984
No 45
>PRK05500 bifunctional orotidine 5'-phosphate decarboxylase/orotate phosphoribosyltransferase protein; Validated
Probab=99.47 E-value=1.4e-12 Score=121.16 Aligned_cols=173 Identities=17% Similarity=0.229 Sum_probs=123.9
Q ss_pred chhHHHHHHHHHHHHhc---CCCeEEEEecccCccccccccCCCCchhHHHHHHHHHHhCCCEEEEEecCChhccCccCc
Q 026473 42 NENLMELLIMIDACRRA---SAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDI 118 (238)
Q Consensus 42 ~~~l~ell~~~~a~~~~---~a~~i~~viPY~~YsRqdr~~~~~~~~~~~~~a~ll~~~g~~~vi~vdlHs~~~~~~f~~ 118 (238)
.+...+|---++..|.. +..+..+..|-.+...|+.. +.++++|-..|+-+.-.+-+-|++.+.+| +
T Consensus 248 ~~~a~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~l~~~l~~~~al~fG~F~L~SG~~S~~Y-i 317 (477)
T PRK05500 248 KEQVKSLREEINQIRQQIVQESSSCDLWTPDVCLLNQHPH---------QDLILQLYDIGCLLFGEYVQASGATFSYY-I 317 (477)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCcccccCccccccccCcH---------HHHHHHHHHCCCeEeCcEEECCcCcCCEE-E
Confidence 34555666666666553 23567888888888777433 45777777778766666777888876554 2
Q ss_pred cCccccccHHHHHH----HHhccCCCCCeEEEEeCCCchHHHHHHHHHcCCCCEEEEEEEeCCCCcEEEEEeccCC-CCC
Q 026473 119 PVDHVYCQPVILDY----LASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDV-KGK 193 (238)
Q Consensus 119 ~~~~l~~~~~la~~----i~~~~~~~~~~viv~pd~g~~~~a~~~a~~l~~~~~~~~~k~r~~~~~~~~~~~~~~v-~gk 193 (238)
....+...|.+.+. +.+.....+-..|++|..||+++|..+|..++ .|+.+.+|..+.++.... +.|.+ +|+
T Consensus 318 D~~~lls~P~~l~~v~~~la~~l~~~~~D~I~Gia~gGiPlAt~lA~~lg-~p~v~vRKe~K~~G~~~~--ieG~~~~G~ 394 (477)
T PRK05500 318 DLRKIISNPQLFHQVLSAYAEILKNLTFDRIAGIPYGSLPTATGLALHLH-HPMIFPRKEVKAHGTRRL--IEGNFHPGE 394 (477)
T ss_pred EChhhhcCHHHHHHHHHHHHHHhccCCCCEEEEEccchHHHHHHHHHHhC-CCEEEEecCcCccCCCce--EecCCCCcC
Confidence 23344434444443 33332223346899999999999999999998 899999888765554332 34555 799
Q ss_pred EEEEEeCcccchHHHHHHHHHHHHCCCCEEEEEE
Q 026473 194 VAVMVDDMIDTAGTIAKGAALLHQEGAREVYACC 227 (238)
Q Consensus 194 ~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~ 227 (238)
+|+||||+++||+|+.++++.|+++|++.+.++|
T Consensus 395 rVlIVDDViTTGgSi~eaie~l~~aG~~V~~v~v 428 (477)
T PRK05500 395 TVVVVDDILITGKSVMEGAEKLKSAGLNVRDIVV 428 (477)
T ss_pred EEEEEEeccccCHHHHHHHHHHHHCCCEEEEEEE
Confidence 9999999999999999999999999999877766
No 46
>COG0461 PyrE Orotate phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=99.46 E-value=2.1e-12 Score=107.03 Aligned_cols=136 Identities=31% Similarity=0.435 Sum_probs=97.3
Q ss_pred HHHHHHHHHhCCCEEEEEecCChhccCcc-CccCccccccHHHHHHHHh----ccCC-CCCeEEEEeCCCchHHHHHHHH
Q 026473 88 KLVANLITEAGADRVLACDLHSGQSMGYF-DIPVDHVYCQPVILDYLAS----KTVS-SNDLVVVSPDVGGVARARAFAK 161 (238)
Q Consensus 88 ~~~a~ll~~~g~~~vi~vdlHs~~~~~~f-~~~~~~l~~~~~la~~i~~----~~~~-~~~~viv~pd~g~~~~a~~~a~ 161 (238)
+.+++++-..++-+.--+.+-|++.+.|| |. ..+...|.+++.+.. ...+ .+..+|++|..||++.|..+|.
T Consensus 4 ~~~~~~l~~~~a~~fG~f~LsSG~~SpyY~d~--~~~~~~p~~~~~i~~~~a~~~~~~~~~d~v~G~a~ggiP~A~~~a~ 81 (201)
T COG0461 4 RELAELLLEKGALKFGEFTLSSGRKSPYYVDL--RLFLTGPELLQLIAFALAEIIKEALEFDVVAGPALGGIPLAAATAL 81 (201)
T ss_pred HHHHHHHHHcCCeecCceeecCCCcCCeEEec--ccccCCHHHHHHHHHHHHHHhhccCCCcEEEeccccchHHHHHHHH
Confidence 45677666677766666668888887655 43 333334444444433 2212 2456999999999999999999
Q ss_pred HcCCCC-EEEEEEEeCCCCcEEEEEecc-CCCCCEEEEEeCcccchHHHHHHHHHHHHCCCCEEEEEE
Q 026473 162 KLSDAP-LAIVDKRRHGHNVAEVMNLIG-DVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACC 227 (238)
Q Consensus 162 ~l~~~~-~~~~~k~r~~~~~~~~~~~~~-~v~gk~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~ 227 (238)
.|...| +.+.+|..+.++... .+.| ..+|++|+||||++|||+++.++++.|+++|+..+.++|
T Consensus 82 ~l~~~~~~~~~Rke~K~hG~~~--~ieG~~~~G~kVvvVEDViTTG~Si~eai~~l~~~G~~V~gv~~ 147 (201)
T COG0461 82 ALAHLPPMAYVRKEAKDHGTGG--LIEGGEVKGEKVVVVEDVITTGGSILEAVEALREAGAEVVGVAV 147 (201)
T ss_pred HhccCCcEEEEeceeccCCCcc--eeEecCCCCCEEEEEEecccCCHhHHHHHHHHHHcCCeEEEEEE
Confidence 983023 778888766665421 1222 348999999999999999999999999999999877776
No 47
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=99.44 E-value=2.6e-12 Score=106.42 Aligned_cols=100 Identities=15% Similarity=0.203 Sum_probs=76.4
Q ss_pred HHHHHHHHhccCCCCCeEEEEeCCCchHHHHHHHHHcCCCCEEEEEEEeCCCC---cEE------------EEEeccC-C
Q 026473 127 PVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHN---VAE------------VMNLIGD-V 190 (238)
Q Consensus 127 ~~la~~i~~~~~~~~~~viv~pd~g~~~~a~~~a~~l~~~~~~~~~k~r~~~~---~~~------------~~~~~~~-v 190 (238)
..+++.+.+++.+.+..+|++|+.+|+++|..+|..|+ .|+.+++|...... ..+ ...+.++ +
T Consensus 36 ~~v~~~l~~~~~~~~~d~Vv~~ea~Gi~la~~lA~~Lg-~p~v~vRK~~k~~~~~~~~~~~~~s~~~~~~~~l~i~~~~l 114 (191)
T TIGR01744 36 QEVGEEFARRFADDGITKIVTIEASGIAPAIMTGLKLG-VPVVFARKKKPLTLTDNLLTASVHSFTKQTTSTVAVSGEFL 114 (191)
T ss_pred HHHHHHHHHHhccCCCCEEEEEccccHHHHHHHHHHHC-CCEEEEEeCCCCCCCCcceEEEEEEeecCccEEEEEEHHhC
Confidence 44455555544333456899999999999999999998 99999998754221 011 1123332 4
Q ss_pred -CCCEEEEEeCcccchHHHHHHHHHHHHCCCCEEEEEE
Q 026473 191 -KGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACC 227 (238)
Q Consensus 191 -~gk~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~ 227 (238)
+|++|+||||+++||+|+.++++.++++||..+.++|
T Consensus 115 ~~G~rVLIVDDvvtTGgT~~a~~~ll~~aGa~Vvgv~~ 152 (191)
T TIGR01744 115 SDQDRVLIIDDFLANGQAAHGLVDIAKQAGAKIAGIGI 152 (191)
T ss_pred CCcCEEEEEEehhccChHHHHHHHHHHHCCCEEEEEEE
Confidence 8999999999999999999999999999999888777
No 48
>TIGR01091 upp uracil phosphoribosyltransferase. that includes uracil phosphoribosyltransferase, uridine kinases, and other, uncharacterized proteins.
Probab=99.43 E-value=2e-12 Score=108.58 Aligned_cols=88 Identities=20% Similarity=0.344 Sum_probs=75.8
Q ss_pred CCeEEEEeCCCchHHHHHHHHHcCCCCEEEEEEEeCCCCc--EE-EEEeccCCCCCEEEEEeCcccchHHHHHHHHHHHH
Q 026473 141 NDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNV--AE-VMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQ 217 (238)
Q Consensus 141 ~~~viv~pd~g~~~~a~~~a~~l~~~~~~~~~k~r~~~~~--~~-~~~~~~~v~gk~vlIVDDii~TG~Tl~~a~~~Lk~ 217 (238)
+++++|++.+||..++..+.+.++.+++.++.++|+.... .. ...++.+++||+|+|+|||++||+|+..+++.|++
T Consensus 68 ~~i~~V~ILrgg~~~~~~l~~~l~~~~v~~i~~~r~~~t~~~~~~~~~lp~~i~~~~VllvDd~laTG~Tl~~ai~~L~~ 147 (207)
T TIGR01091 68 KKIVLVPILRAGLGMVDGVLKLIPEAKVGHVGAYRNEETLKPVPYYSKLPEDIDERTVIVLDPMLATGGTMIAALDLLKK 147 (207)
T ss_pred CcEEEEEEeCCcHHHHHHHHHhCCcCceeEEEEEeCCCCCCCEEEEecCCCCCCCCEEEEECCCccchHHHHHHHHHHHH
Confidence 4689999999999999999999986788888888864321 11 23566789999999999999999999999999999
Q ss_pred CCCCEEEEEEE
Q 026473 218 EGAREVYACCT 228 (238)
Q Consensus 218 ~Ga~~V~~~~t 228 (238)
.|+++|.++|.
T Consensus 148 ~G~~~I~v~~l 158 (207)
T TIGR01091 148 RGAKKIKVLSI 158 (207)
T ss_pred cCCCEEEEEEE
Confidence 99999999886
No 49
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=99.41 E-value=3.6e-12 Score=105.40 Aligned_cols=98 Identities=15% Similarity=0.191 Sum_probs=73.8
Q ss_pred HHHHHHhccCCCCCeEEEEeCCCchHHHHHHHHHcCCCCEEEEEEEeCCC--Cc-E------------EEEEecc-CC-C
Q 026473 129 ILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGH--NV-A------------EVMNLIG-DV-K 191 (238)
Q Consensus 129 la~~i~~~~~~~~~~viv~pd~g~~~~a~~~a~~l~~~~~~~~~k~r~~~--~~-~------------~~~~~~~-~v-~ 191 (238)
+++.+.+.+.+.+..+|++|+.+|+++|..+|.+++ .|+.+++|..+.. +. . ....+.. .+ +
T Consensus 38 i~~~la~~~~~~~~D~Ivg~e~~GiplA~~lA~~Lg-~p~v~vRK~~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~i~~ 116 (189)
T PRK09219 38 IGKEFARRFKDEGITKILTIEASGIAPAVMAALALG-VPVVFAKKKKSLTLTDDVYTATVYSFTKQVTSTVSVSKKFLSE 116 (189)
T ss_pred HHHHHHHHhccCCCCEEEEEccccHHHHHHHHHHHC-CCEEEEEECCCCCCCCceEEEEEeeeccCceEEEEEEhhhCCC
Confidence 333343333233456899999999999999999999 9999999876432 11 1 0112222 23 7
Q ss_pred CCEEEEEeCcccchHHHHHHHHHHHHCCCCEEEEEE
Q 026473 192 GKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACC 227 (238)
Q Consensus 192 gk~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~ 227 (238)
|++|+||||+++||+|+.++++.++++||+.+.+++
T Consensus 117 G~rVlIVDDviaTGgT~~a~~~lv~~aGa~vvgv~~ 152 (189)
T PRK09219 117 GDRVLIIDDFLANGQAALGLIDIIEQAGAKVAGIGI 152 (189)
T ss_pred CCEEEEEeehhhcChHHHHHHHHHHHCCCEEEEEEE
Confidence 999999999999999999999999999999877776
No 50
>PRK11595 DNA utilization protein GntX; Provisional
Probab=99.40 E-value=1.5e-13 Score=116.90 Aligned_cols=145 Identities=26% Similarity=0.299 Sum_probs=88.0
Q ss_pred eEEEEecccCcccc---ccccCCCCchhHHHHHHHHHH-----------hCCCEEEEEecCChhc-cCccCccCcccccc
Q 026473 62 NITAVIPYFGYARA---DRKTQGRESIAAKLVANLITE-----------AGADRVLACDLHSGQS-MGYFDIPVDHVYCQ 126 (238)
Q Consensus 62 ~i~~viPY~~YsRq---dr~~~~~~~~~~~~~a~ll~~-----------~g~~~vi~vdlHs~~~-~~~f~~~~~~l~~~ 126 (238)
+..++.+|-+..|+ .-|+. |..--++.++++|.. ...|.|++|++|..+. +.-||+ .
T Consensus 63 ~~~a~~~Y~g~~r~lI~~~Ky~-~~~~l~~~l~~~l~~~~~~~~~~~~~~~~d~ivpVPl~~~r~~~RGfnq-------~ 134 (227)
T PRK11595 63 RLVFVSDYAPPLSGLIHQLKFS-RRSELASVLARLLLLEWLQARRSTGLQKPDRIISVPLHQRRHWRRGFNQ-------S 134 (227)
T ss_pred heeeeeecccHHHHHHHHHHHC-ccHHHHHHHHHHHHHHHHHHhhhhcccCCCeEEecCCCHHHHHHCCCCH-------H
Confidence 45566666665554 23333 333445666666632 1458899999999875 455786 6
Q ss_pred HHHHHHHHhccCCCCCeEEEEeCCCchHHHHHHHHHcCCCCEEEEEEEeCCCCcEEEEEeccCCCCCEEEEEeCcccchH
Q 026473 127 PVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAG 206 (238)
Q Consensus 127 ~~la~~i~~~~~~~~~~viv~pd~g~~~~a~~~a~~l~~~~~~~~~k~r~~~~~~~~~~~~~~v~gk~vlIVDDii~TG~ 206 (238)
..+++.+.+.. +. + ++.+.+.+.+..+.+.+ .. .++|.. +......+.++++|++|+|||||+|||.
T Consensus 135 ~~la~~la~~~-~~--~----~~~~~l~r~~~~~~q~~-l~----~~~R~~-n~~~~f~~~~~~~~~~vllvDDv~tTG~ 201 (227)
T PRK11595 135 DLLCRPLARWL-GC--D----YDSEALTRTRATATQHF-LS----ARLRKR-NLKNAFRLELPVQGQHMAIVDDVVTTGS 201 (227)
T ss_pred HHHHHHHHHHH-CC--C----CcccceEEecCCCCccc-CC----HHHHhh-hhhhhhccCCCCCCCEEEEEeeeecchH
Confidence 77787776653 11 0 11122222222222211 11 111211 1111123345789999999999999999
Q ss_pred HHHHHHHHHHHCCCCEEEEEE
Q 026473 207 TIAKGAALLHQEGAREVYACC 227 (238)
Q Consensus 207 Tl~~a~~~Lk~~Ga~~V~~~~ 227 (238)
|+.++++.|+++|+++|++++
T Consensus 202 Tl~~~~~~L~~~g~~~V~~~~ 222 (227)
T PRK11595 202 TVAEIAQLLLRNGAASVQVWC 222 (227)
T ss_pred HHHHHHHHHHHcCCcEEEEEE
Confidence 999999999999999999987
No 51
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=99.38 E-value=7.3e-12 Score=107.18 Aligned_cols=99 Identities=24% Similarity=0.256 Sum_probs=74.2
Q ss_pred HHHHHHHhccCCCCCeEEEEeCCCchHHHHHHHHHcCCCCEEEEEEEeCCC-C------------cEEEEEec-cC-CCC
Q 026473 128 VILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGH-N------------VAEVMNLI-GD-VKG 192 (238)
Q Consensus 128 ~la~~i~~~~~~~~~~viv~pd~g~~~~a~~~a~~l~~~~~~~~~k~r~~~-~------------~~~~~~~~-~~-v~g 192 (238)
.+++.+.+.+.+.+.++|+++..+|+++|..+|..|+ .|+.+++|.+... . ....+.+. .. .+|
T Consensus 98 ~v~~~la~~~~~~~~D~Vvtv~~~GI~lA~~lA~~L~-~p~vi~Rk~~~~~~~~~v~~y~s~s~~~~~~~~l~~~~l~~G 176 (238)
T PRK08558 98 LIAPVVAERFMGLRVDVVLTAATDGIPLAVAIASYFG-ADLVYAKKSKETGVEKFYEEYQRLASGIEVTLYLPASALKKG 176 (238)
T ss_pred HHHHHHHHHccCCCCCEEEEECcccHHHHHHHHHHHC-cCEEEEEecCCCCCcceEEEeeccCCCceeEEEecHHHcCCc
Confidence 3344444444233446899999999999999999999 8999888765311 0 11111222 12 589
Q ss_pred CEEEEEeCcccchHHHHHHHHHHHHCCCCEEEEEE
Q 026473 193 KVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACC 227 (238)
Q Consensus 193 k~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~ 227 (238)
++|+||||+++||+|+.++++.++++||+.+.++|
T Consensus 177 ~rVLIVDDvi~TG~Tl~~~~~ll~~~ga~vvgv~v 211 (238)
T PRK08558 177 DRVLIVDDIIRSGETQRALLDLARQAGADVVGVFF 211 (238)
T ss_pred CEEEEEecccccCHHHHHHHHHHHHcCCEEEEEEE
Confidence 99999999999999999999999999999888877
No 52
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=99.33 E-value=1.7e-11 Score=100.57 Aligned_cols=95 Identities=29% Similarity=0.340 Sum_probs=73.3
Q ss_pred HHHhccCCCCCeEEEEeCCCchHHHHHHHHHcCCCCEEEEEEEeCCCCc-----------EEEEEeccC-C-CCCEEEEE
Q 026473 132 YLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNV-----------AEVMNLIGD-V-KGKVAVMV 198 (238)
Q Consensus 132 ~i~~~~~~~~~~viv~pd~g~~~~a~~~a~~l~~~~~~~~~k~r~~~~~-----------~~~~~~~~~-v-~gk~vlIV 198 (238)
++.+.+...+-..|+++..+|+.+|..+|.+|| .|+..++|.+..... .+...+..+ + +|++|+||
T Consensus 44 ~~~~~~~~~~id~Iv~iea~Gi~~a~~vA~~Lg-vp~v~vRK~~kl~~~~~~~~~~~~~~~~~l~~~~~~l~~G~rVlIV 122 (179)
T COG0503 44 ELAERYKDDGIDKIVTIEARGIPLAAAVALELG-VPFVPVRKKGKLPEESVVETYYLEYGSETLELHKDALKPGDRVLIV 122 (179)
T ss_pred HHHHHhcccCCCEEEEEccccchhHHHHHHHhC-CCEEEEEecCCCCCcceeEEEEEeccceEEEEEhhhCCCCCEEEEE
Confidence 444443223356999999999999999999999 999999987642210 111222222 3 69999999
Q ss_pred eCcccchHHHHHHHHHHHHCCCCEEEEEE
Q 026473 199 DDMIDTAGTIAKGAALLHQEGAREVYACC 227 (238)
Q Consensus 199 DDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~ 227 (238)
||+++||+|+.++.+++.++|+.-+.+++
T Consensus 123 DDllaTGgT~~a~~~Ll~~~ga~vvg~~~ 151 (179)
T COG0503 123 DDLLATGGTALALIELLEQAGAEVVGAAF 151 (179)
T ss_pred ecchhcChHHHHHHHHHHHCCCEEEEEEE
Confidence 99999999999999999999999888776
No 53
>PRK09123 amidophosphoribosyltransferase; Provisional
Probab=99.33 E-value=1.9e-11 Score=114.16 Aligned_cols=105 Identities=29% Similarity=0.286 Sum_probs=80.3
Q ss_pred HHHHHHHHhccCCCCCeEEEEeCCCchHHHHHHHHHcCCCCEE--EEEEEeCC------------CCcEEEE-Eecc-CC
Q 026473 127 PVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLA--IVDKRRHG------------HNVAEVM-NLIG-DV 190 (238)
Q Consensus 127 ~~la~~i~~~~~~~~~~viv~pd~g~~~~a~~~a~~l~~~~~~--~~~k~r~~------------~~~~~~~-~~~~-~v 190 (238)
..+.+.|.+.. +.+..+++++..+|...|..+++.++ .|+. ++ |.|.. ....+.. +... .+
T Consensus 282 ~~~g~~La~~~-~~~~D~Vv~VP~sg~~~A~~la~~lg-ip~~~~li-r~~y~grt~i~~~q~~r~~~v~~k~~~~~~~~ 358 (479)
T PRK09123 282 KNIGRELARES-PVDADVVVPVPDSGVPAAIGYAQESG-IPFELGII-RNHYVGRTFIQPTQQIRNLGVKLKHNANRAVI 358 (479)
T ss_pred HHHHHHHHHhC-CCCCeEEEEcCccHHHHHHHHHHhcC-CCeeheEE-EEeecCccccccccccccccEEEEeccccccc
Confidence 45666666554 23456899999999999999999999 8875 33 33321 0111211 1122 37
Q ss_pred CCCEEEEEeCcccchHHHHHHHHHHHHCCCCEEEEEE-----EcccccC
Q 026473 191 KGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACC-----THAVFRL 234 (238)
Q Consensus 191 ~gk~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~-----tH~~fs~ 234 (238)
+||+|+||||+++||.|+.++++.|+++||++|++++ +|+.|.+
T Consensus 359 ~gk~vvlvDD~i~tG~Tl~~~~~~l~~~Ga~~v~~~~~~p~~~~~~~~g 407 (479)
T PRK09123 359 EGKRVVLVDDSIVRGTTSRKIVQMLRDAGAKEVHLRIASPPITHPCFYG 407 (479)
T ss_pred CCCEEEEEeceeCchHHHHHHHHHHHHcCCCEEEEEEcCCCCccceeec
Confidence 8999999999999999999999999999999999999 9999998
No 54
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=99.30 E-value=3.8e-11 Score=103.98 Aligned_cols=162 Identities=22% Similarity=0.305 Sum_probs=102.8
Q ss_pred HHHHHHHHHhcCCCeEEEE------ecccCccccccccCCCCchhHHHHHHHHHHhCCCEEEEEecCChhccCccCccCc
Q 026473 48 LLIMIDACRRASAKNITAV------IPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVD 121 (238)
Q Consensus 48 ll~~~~a~~~~~a~~i~~v------iPY~~YsRqdr~~~~~~~~~~~~~a~ll~~~g~~~vi~vdlHs~~~~~~f~~~~~ 121 (238)
|.++-+++...|.-++..+ +-|.|+...+.. .+ -...+++.|+..+ ++.+= +|+. ..
T Consensus 42 ~~i~~~~~~~~~~g~~~t~~ga~ggv~~~p~~~~~~~---~~--~~~~l~~~l~~~~--rilpg--------g~~~--~s 104 (268)
T TIGR01743 42 IVIIKETFEKFGIGKLLTVPGAAGGVKYIPKMSQAEA---EE--FVEELCQSLSEPE--RILPG--------GYLY--LT 104 (268)
T ss_pred HHHHHHHHHhcCCceEEEeCCCCCCeEEEeCCCHHHH---HH--HHHHHHHHHHHCC--CcccC--------CeEE--ec
Confidence 5678888888887776654 234444332211 00 1234566666543 33320 1111 11
Q ss_pred cccccHHH----HHHHHhccCCCCCeEEEEeCCCchHHHHHHHHHcCCCCEEEEEEEeCC-CC-------------cEEE
Q 026473 122 HVYCQPVI----LDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHG-HN-------------VAEV 183 (238)
Q Consensus 122 ~l~~~~~l----a~~i~~~~~~~~~~viv~pd~g~~~~a~~~a~~l~~~~~~~~~k~r~~-~~-------------~~~~ 183 (238)
.+...|.+ ++.+.+.+.+.+..+|+++..+|+++|..+|..|+ .|+.+++|..+. .+ .++.
T Consensus 105 ~ll~~P~~l~~ig~~la~~~~~~~iD~VvgvetkGIpLA~avA~~L~-vp~vivRK~~K~t~g~~vs~nY~sgs~~~ie~ 183 (268)
T TIGR01743 105 DILGKPSILSKIGKILASVFAEREIDAVMTVATKGIPLAYAVASVLN-VPLVIVRKDSKVTEGSTVSINYVSGSSNRIQT 183 (268)
T ss_pred hhhcCHHHHHHHHHHHHHHhcCCCCCEEEEEccchHHHHHHHHHHHC-CCEEEEEECCCCCCCCcEEEEEEcccCccceE
Confidence 12223333 33333333233456999999999999999999999 999999887642 11 1112
Q ss_pred EEecc-CC-CCCEEEEEeCcccchHHHHHHHHHHHHCCCCEEEEEE
Q 026473 184 MNLIG-DV-KGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACC 227 (238)
Q Consensus 184 ~~~~~-~v-~gk~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~ 227 (238)
+.+.. .+ +|++|+||||+++||+|+.+++++++++||+-+.+++
T Consensus 184 m~l~k~~l~~G~rVLIVDDv~~TGgTi~a~i~Ll~e~Ga~VvGv~v 229 (268)
T TIGR01743 184 MSLAKRSLKTGSKVLIIDDFMKAGGTINGMINLLDEFDAEVAGIGV 229 (268)
T ss_pred EEEehhhCCCcCEEEEEeeecccCHHHHHHHHHHHHCCCEEEEEEE
Confidence 22221 33 7999999999999999999999999999999887776
No 55
>COG0856 Orotate phosphoribosyltransferase homologs [Nucleotide transport and metabolism]
Probab=99.30 E-value=2.6e-11 Score=97.03 Aligned_cols=99 Identities=31% Similarity=0.403 Sum_probs=74.4
Q ss_pred HHHHHHHHhccCCCCCeEEEEeCCCchHHHHHHHHHcCCCCEEEEE--EEeCCCCcE---EEEEeccCCCCCEEEEEeCc
Q 026473 127 PVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVD--KRRHGHNVA---EVMNLIGDVKGKVAVMVDDM 201 (238)
Q Consensus 127 ~~la~~i~~~~~~~~~~viv~pd~g~~~~a~~~a~~l~~~~~~~~~--k~r~~~~~~---~~~~~~~~v~gk~vlIVDDi 201 (238)
..+++.+.++. ..+-+++|++...|+++|..+|..|| .++.+.+ |.|...+.- .+..-.+.|+||+|+||||+
T Consensus 73 ~am~Dm~m~~~-~~evDvVvGIa~sGvPlAtmvA~elg-~elaiY~PrK~~~de~~~~~G~iS~NFa~V~gK~cvIVDDv 150 (203)
T COG0856 73 EAMADMIMEKV-SFEVDVVVGIAISGVPLATMVAYELG-KELAIYHPRKHRKDEGAGKGGSISSNFASVEGKRCVIVDDV 150 (203)
T ss_pred HHHHHHHHHhc-cceeEEEEEEeecCccHHHHHHHHhC-CceEEEecccccccccCCcCceeecccccccCceEEEEecc
Confidence 44555332322 24567999999999999999999999 8886554 444332211 11233457999999999999
Q ss_pred ccchHHHHHHHHHHHHCCCCEEEEEE
Q 026473 202 IDTAGTIAKGAALLHQEGAREVYACC 227 (238)
Q Consensus 202 i~TG~Tl~~a~~~Lk~~Ga~~V~~~~ 227 (238)
++||.|+.++++.|++.|++.+.+.+
T Consensus 151 ittG~Ti~E~Ie~lke~g~kpv~v~V 176 (203)
T COG0856 151 ITTGSTIKETIEQLKEEGGKPVLVVV 176 (203)
T ss_pred cccChhHHHHHHHHHHcCCCcEEEEE
Confidence 99999999999999999999877765
No 56
>PRK06031 phosphoribosyltransferase; Provisional
Probab=99.30 E-value=5.3e-11 Score=101.45 Aligned_cols=100 Identities=21% Similarity=0.240 Sum_probs=70.1
Q ss_pred HHHHHHHHhccCCCCCeEEEEeCCCchHHHHHHHHHcCCCC-EEEEEEEeCC---C------------CcEEEEEec---
Q 026473 127 PVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAP-LAIVDKRRHG---H------------NVAEVMNLI--- 187 (238)
Q Consensus 127 ~~la~~i~~~~~~~~~~viv~pd~g~~~~a~~~a~~l~~~~-~~~~~k~r~~---~------------~~~~~~~~~--- 187 (238)
..+++.+.+++...+..+|+++..+|+.+|..+|..|+ .+ +..+.+.|+. . +..+...+.
T Consensus 70 ~~la~~La~~~~~~~~DvIVgv~~~Gi~lA~~lA~~Lg-~~~~vpl~~~rK~~~~~~l~~~~~sitt~~~~~~~~l~~~~ 148 (233)
T PRK06031 70 DALAEHLAEKARAFDPDVVAGLPTLGLTLAAAVARKLG-HTRYVPLGTSRKFWYRDELSVPLSSITTPDQGKRLYIDPRM 148 (233)
T ss_pred HHHHHHHHHHcccCCCcEEEEeccCCHHHHHHHHHHHC-CCCceEEEEccccccccccccceeeeeccCccceEEecccc
Confidence 34666666654333457999999999999999999998 43 2223322211 0 010111111
Q ss_pred -cCCCCCEEEEEeCcccchHHHHHHHHHHHHCCCCEEEEEE
Q 026473 188 -GDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACC 227 (238)
Q Consensus 188 -~~v~gk~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~ 227 (238)
..++|++|+||||+++||+|+.++++.|+++|++.+.+++
T Consensus 149 ~~~~~GkrVLIVDDVitTG~Tl~aa~~lL~~~Ga~Vvgv~v 189 (233)
T PRK06031 149 LPLLEGRRVALIDDVISSGASIVAGLRLLAACGIEPAGIGA 189 (233)
T ss_pred cccCCCCEEEEEEeEccccHHHHHHHHHHHHcCCeEEEEEE
Confidence 2368999999999999999999999999999998776665
No 57
>TIGR00201 comF comF family protein. This protein is found in species that do (Bacillus subtilis, Haemophilus influenzae) or do not (E. coli, Borrelia burgdorferi) have described systems for natural transformation with exogenous DNA. It is involved in competence for transformation in Bacillus subtilis.
Probab=99.27 E-value=7.4e-11 Score=97.71 Aligned_cols=121 Identities=21% Similarity=0.259 Sum_probs=73.7
Q ss_pred CchhHHHHHHHHHH----h---CCCEEEEEecCChhc-cCccCccCccccccHHHHHHHHhccCCCCCeEEEEeCCCchH
Q 026473 83 ESIAAKLVANLITE----A---GADRVLACDLHSGQS-MGYFDIPVDHVYCQPVILDYLASKTVSSNDLVVVSPDVGGVA 154 (238)
Q Consensus 83 ~~~~~~~~a~ll~~----~---g~~~vi~vdlHs~~~-~~~f~~~~~~l~~~~~la~~i~~~~~~~~~~viv~pd~g~~~ 154 (238)
+.--++.+++++.. . ..+.|++|++|..+. +.-||+ ...+++.+.+......+ .+.
T Consensus 57 ~~~l~~~l~~~l~~~~~~~~~~~~~~ivpVP~~~~r~~~RGfnq-------~~~la~~l~~~~~~~~~-~l~-------- 120 (190)
T TIGR00201 57 QAEIIRALASLLSLTVSKAYRDLPDVIVPVPLSKEREWRRGFNQ-------ADLLAQCLSRWLFNYHN-IVI-------- 120 (190)
T ss_pred ChHHHHHHHHHHHHHHHhhccCCCCEEEeCCCCHHHHHHhCCCH-------HHHHHHHHHHHhCCCcc-eEE--------
Confidence 33345566665532 1 247899999999765 455786 67888887654210011 111
Q ss_pred HHHHHHHHcCCCCEEEEEEEeCC--CCcEEEEEecc-CCCCCEEEEEeCcccchHHHHHHHHHHHHCCCCEEEEEEE
Q 026473 155 RARAFAKKLSDAPLAIVDKRRHG--HNVAEVMNLIG-DVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCT 228 (238)
Q Consensus 155 ~a~~~a~~l~~~~~~~~~k~r~~--~~~~~~~~~~~-~v~gk~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~t 228 (238)
+.+. ..+-+ +. .+.|.. .+.+ .+.. +++||+|+|||||+|||.|+.++++.|+++||++|++++.
T Consensus 121 r~~~-~~Q~~-l~----~~~R~~n~~~~f---~~~~~~~~~~~vllvDDV~TTGaTl~~~~~~L~~~Ga~~V~~~~l 188 (190)
T TIGR00201 121 RLNN-ETQSK-LK----ATLRFLNLENAF---DLKNNSFQGRNIVLVDDVVTTGATLHEIARLLLELGAASVQVWTL 188 (190)
T ss_pred Eecc-ccccc-CC----HHHHHHHHhCcE---EccCCCCCCCEEEEEeeeeccHHHHHHHHHHHHHcCCCEEEEEEE
Confidence 1111 11111 00 011111 1122 2222 4789999999999999999999999999999999999873
No 58
>PLN02440 amidophosphoribosyltransferase
Probab=99.26 E-value=5.3e-11 Score=111.40 Aligned_cols=101 Identities=25% Similarity=0.282 Sum_probs=74.5
Q ss_pred cHHHHHHHHhccCCCCCeEEEEeCCCchHHHHHHHHHcCCCCEE--EEEEEeCCC------------CcEEE-EE-eccC
Q 026473 126 QPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLA--IVDKRRHGH------------NVAEV-MN-LIGD 189 (238)
Q Consensus 126 ~~~la~~i~~~~~~~~~~viv~pd~g~~~~a~~~a~~l~~~~~~--~~~k~r~~~------------~~~~~-~~-~~~~ 189 (238)
...+++.|.+... .+.++++++..++..+|..+++.++ +|+. ++ |.|... ...+. .. ....
T Consensus 261 r~~~g~~La~~~~-~~~d~vvpVP~s~~~~A~~la~~lg-iP~~~~lv-r~ry~~rt~i~~~q~~r~~~~~~k~~~~~~~ 337 (479)
T PLN02440 261 RLEFGEILATEIP-VDCDVVIPVPDSGRVAALGYAAKLG-VPFQQGLI-RSHYVGRTFIEPSQKIRDFSVKLKLNPVRSV 337 (479)
T ss_pred HHHHHHHHHHhcC-CCCCEEEEeCCcHHHHHHHHHHHhC-CCchhheE-EEeeccccccCcchhhhhhhheeeeeccccc
Confidence 3456666666542 2445788888889999999999998 8874 33 333210 01111 11 2246
Q ss_pred CCCCEEEEEeCcccchHHHHHHHHHHHHCCCCEEEEEEEc
Q 026473 190 VKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTH 229 (238)
Q Consensus 190 v~gk~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH 229 (238)
++||+|+||||+++||.|+.++++.|+++||++|++++.=
T Consensus 338 v~gk~VlLVDDiittGtTl~~i~~~L~~aGa~~V~v~v~~ 377 (479)
T PLN02440 338 LEGKRVVVVDDSIVRGTTSSKIVRMLREAGAKEVHMRIAS 377 (479)
T ss_pred ccCceEEEEeceeCcHHHHHHHHHHHHhcCCCEEEEEEEC
Confidence 8999999999999999999999999999999999998863
No 59
>COG1040 ComFC Predicted amidophosphoribosyltransferases [General function prediction only]
Probab=99.25 E-value=1.6e-11 Score=104.32 Aligned_cols=143 Identities=22% Similarity=0.320 Sum_probs=87.8
Q ss_pred eEEEEecccCcccc---ccccCCCCchhHHHHHHHHHHh------CCCEEEEEecCChhc-cCccCccCccccccHHHHH
Q 026473 62 NITAVIPYFGYARA---DRKTQGRESIAAKLVANLITEA------GADRVLACDLHSGQS-MGYFDIPVDHVYCQPVILD 131 (238)
Q Consensus 62 ~i~~viPY~~YsRq---dr~~~~~~~~~~~~~a~ll~~~------g~~~vi~vdlHs~~~-~~~f~~~~~~l~~~~~la~ 131 (238)
+...+-.|-+-.|+ .-|+. ++..-++.+|++|... -++.|++|++|..+. +.-||+ +..+++
T Consensus 67 ~~~~~~~Y~~~l~~~i~~~Kf~-~~~~l~~~la~~l~~~~~~~~~~~~~iVpVPls~~r~~~RGFNQ-------~~~la~ 138 (225)
T COG1040 67 RLRSLGSYNGPLRELISQLKFQ-GDLDLAKLLARLLAKALDDFLEKPDLIVPVPLSPSRLLERGFNQ-------SELLAR 138 (225)
T ss_pred eEEEEEEccHHHHHHHHHhhhC-CchhHHHHHHHHHHHHHhhccccCCeEEEecCCHHHHHHcCCCH-------HHHHHH
Confidence 34455555554443 12322 3344556677666442 357999999997765 667897 788999
Q ss_pred HHHhccCCCCCeEEEEeCCCchHHHHHHHHHcCCCCEEEEEEEeCCCCcEEEEEeccCCCC-CEEEEEeCcccchHHHHH
Q 026473 132 YLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKG-KVAVMVDDMIDTAGTIAK 210 (238)
Q Consensus 132 ~i~~~~~~~~~~viv~pd~g~~~~a~~~a~~l~~~~~~~~~k~r~~~~~~~~~~~~~~v~g-k~vlIVDDii~TG~Tl~~ 210 (238)
.+...+ +.+. ...+.+.-..+-+ .-.+.|.. +......+.+..+. |+|+|||||+|||.|+.+
T Consensus 139 ~l~~~~---~~~~-------~~~r~k~~~~q~~-----l~~~~rr~-nl~~aF~~~~~~~~~~~vlLvDDV~TTGaTl~~ 202 (225)
T COG1040 139 ALARRL---GKPI-------ALRRVKDTSPQQG-----LKALERRR-NLKGAFRLKKGIEEPKNVLLVDDVYTTGATLKE 202 (225)
T ss_pred HHHHHh---CchH-------HHHHHhccccccc-----cchHHHHH-hccCCeecCCCCCCCCeEEEEecccccHHHHHH
Confidence 987764 1111 2222222222222 00111211 11112334445544 999999999999999999
Q ss_pred HHHHHHHCCCCEEEEEEE
Q 026473 211 GAALLHQEGAREVYACCT 228 (238)
Q Consensus 211 a~~~Lk~~Ga~~V~~~~t 228 (238)
+++.|+++||++|.+++.
T Consensus 203 ~~~~L~~~Ga~~v~~~~l 220 (225)
T COG1040 203 AAKLLREAGAKRVFVLTL 220 (225)
T ss_pred HHHHHHHcCCceEEEEEE
Confidence 999999999999999873
No 60
>PRK09213 pur operon repressor; Provisional
Probab=99.25 E-value=8.8e-11 Score=101.92 Aligned_cols=98 Identities=27% Similarity=0.305 Sum_probs=73.3
Q ss_pred HHHHHHhccCCCCCeEEEEeCCCchHHHHHHHHHcCCCCEEEEEEEeCC-CCc-------------EEEEEecc-CC-CC
Q 026473 129 ILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHG-HNV-------------AEVMNLIG-DV-KG 192 (238)
Q Consensus 129 la~~i~~~~~~~~~~viv~pd~g~~~~a~~~a~~l~~~~~~~~~k~r~~-~~~-------------~~~~~~~~-~v-~g 192 (238)
+++.+.+.+.+.+..+|+++..+|+++|..+|..|+ .|+.+++|..+. ++. ++.+.+.. .+ +|
T Consensus 118 i~~~la~~~~~~~iD~Vvtvet~GIplA~~vA~~L~-vp~vivRK~~K~~~G~~vs~~y~sgs~~~ie~m~L~~~~l~~G 196 (271)
T PRK09213 118 IGRIIASAFADKKIDAVMTVETKGIPLAYAVANYLN-VPFVIVRRDSKVTEGSTVSINYVSGSSKRIETMSLSKRSLKEG 196 (271)
T ss_pred HHHHHHHHhcccCCCEEEEEccccHHHHHHHHHHHC-CCEEEEEECCCCCCCCcEEEEEEecccccceEEEEeHhhcCCc
Confidence 333344433233456999999999999999999999 999999886542 111 11112211 34 79
Q ss_pred CEEEEEeCcccchHHHHHHHHHHHHCCCCEEEEEE
Q 026473 193 KVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACC 227 (238)
Q Consensus 193 k~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~ 227 (238)
++|+||||+++||+|+.+++++++++||.-+.+++
T Consensus 197 ~rVLIVDDv~~TGgTi~a~i~Ll~e~Ga~VvGv~v 231 (271)
T PRK09213 197 SRVLIVDDFMKAGGTINGMISLLKEFDAEVVGIGV 231 (271)
T ss_pred CEEEEEeeecccCHhHHHHHHHHHHCCCEEEEEEE
Confidence 99999999999999999999999999999877766
No 61
>PRK08341 amidophosphoribosyltransferase; Provisional
Probab=99.23 E-value=5.2e-11 Score=110.19 Aligned_cols=102 Identities=26% Similarity=0.284 Sum_probs=72.5
Q ss_pred HHHHHHHHhccCCCCCeEEEEeCCCchHHHHHHHHHcCCCCEEE-EEEEeCC------CCc------EEEEEeccCCCCC
Q 026473 127 PVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAI-VDKRRHG------HNV------AEVMNLIGDVKGK 193 (238)
Q Consensus 127 ~~la~~i~~~~~~~~~~viv~pd~g~~~~a~~~a~~l~~~~~~~-~~k~r~~------~~~------~~~~~~~~~v~gk 193 (238)
..+.+.|++......+.++..|+.|. .+|..+|+.+| .|+.. +.|.|.. ..+ .+.....+.++||
T Consensus 258 ~~~G~~La~~~~~~~D~Vv~VPdsg~-~~A~~~a~~lg-ip~~~~l~k~r~~~rtfi~~~qr~~~~~~k~~~~~~~v~gk 335 (442)
T PRK08341 258 YRMGVELARESPAEGDVVIAVPDSGR-TAALGFAHESG-IPYMEGLIKNRYIGRTFIMPSGRELKVKLKLSPVREVINGK 335 (442)
T ss_pred HHHHHHhhcccCCCCceEEEecCchH-HHHHHHHHHhC-CCchheEEEeccccccccCcCchhhhheeeecccccccCCC
Confidence 45666666554222344555555555 79999999999 89853 5666531 111 1111334568999
Q ss_pred EEEEEeCcccchHHHHHHHHHHHHCCCCEEEEEEEcc
Q 026473 194 VAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHA 230 (238)
Q Consensus 194 ~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~ 230 (238)
+|+||||+++||+|+.++++.|+++||++|++.++-+
T Consensus 336 ~VlLVDD~IttGtTl~~~~~~L~~aGAk~V~~~~~sp 372 (442)
T PRK08341 336 RVVLVDDSIVRGTTMKRIVKMLRDAGAREVHVRIASP 372 (442)
T ss_pred EEEEEeeeeccHHHHHHHHHHHHhcCCcEEEEEEcCC
Confidence 9999999999999999999999999999999987544
No 62
>PRK07272 amidophosphoribosyltransferase; Provisional
Probab=99.22 E-value=7.6e-11 Score=110.12 Aligned_cols=106 Identities=24% Similarity=0.280 Sum_probs=79.6
Q ss_pred HHHHHHHHhccCCCCCeEEEEeCCCchHHHHHHHHHcCCCCEEE-EEEEeCCC------Cc------EE-EEE-eccCCC
Q 026473 127 PVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAI-VDKRRHGH------NV------AE-VMN-LIGDVK 191 (238)
Q Consensus 127 ~~la~~i~~~~~~~~~~viv~pd~g~~~~a~~~a~~l~~~~~~~-~~k~r~~~------~~------~~-~~~-~~~~v~ 191 (238)
..+++.|.+... .+.++|+++...|...|..+|+.+| +|+.. +.|.|... +. .+ ... ....++
T Consensus 272 ~~lg~~La~~~~-~~~D~VvpVPnqa~~lA~~la~~lg-ip~~~~lvk~~~~~rt~~~~~q~~R~~~vr~~f~~~~~~~~ 349 (484)
T PRK07272 272 KRMGKRLAQEFP-HDADIVIGVPNSSLSAASGYAEESG-LPYEMGLVKNQYVARTFIQPTQELREQGVRMKLSAVSGVVK 349 (484)
T ss_pred HHHHHHHHhhcC-CCCCEEEEecHHHHHHHHHHHHHHC-CCcccCeEEEccCCccccCCCHHHHHHHHhhCccccccccC
Confidence 466777766542 2345788888899999999999998 88732 22333211 00 00 111 234689
Q ss_pred CCEEEEEeCcccchHHHHHHHHHHHHCCCCEEEEEEEcccccC
Q 026473 192 GKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHAVFRL 234 (238)
Q Consensus 192 gk~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~~fs~ 234 (238)
||+|+||||+++||.|+.++++.|+++||++|+++++|+.|..
T Consensus 350 gk~vllVDDvittG~T~~~~~~~L~~~Ga~~v~~~~~~p~~~~ 392 (484)
T PRK07272 350 GKRVVMVDDSIVRGTTSRRIVQLLKEAGAKEVHVAIASPELKY 392 (484)
T ss_pred CCEEEEEccccCchHHHHHHHHHHHhcCCcEEEEEEeCCcccc
Confidence 9999999999999999999999999999999999999998875
No 63
>PRK09177 xanthine-guanine phosphoribosyltransferase; Validated
Probab=99.22 E-value=1.3e-10 Score=93.31 Aligned_cols=87 Identities=20% Similarity=0.230 Sum_probs=63.6
Q ss_pred cHHHHHHHHhccCCCCCeEEEEeCCCchHHHHHHHHHcCCCCEE-EEEEEeC---CCCcEEEEEeccCCCCCEEEEEeCc
Q 026473 126 QPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLA-IVDKRRH---GHNVAEVMNLIGDVKGKVAVMVDDM 201 (238)
Q Consensus 126 ~~~la~~i~~~~~~~~~~viv~pd~g~~~~a~~~a~~l~~~~~~-~~~k~r~---~~~~~~~~~~~~~v~gk~vlIVDDi 201 (238)
...+++.|.+. .+.++++++.+||+.+|..++.+|+ .|+. ++.-.+. ..+..+.... ...+||+||||||+
T Consensus 19 i~~la~~I~~~---~~~d~vvgv~~GG~~fa~~L~~~L~-~~~v~~i~~ssY~~~~~~~~~~~~~-~~~~gk~VLIVDDI 93 (156)
T PRK09177 19 ARALAWRLLPA---GQWKGIIAVTRGGLVPAAILARELG-IRLVDTVCISSYDHDNQGELKVLKR-AEGDGEGFLVVDDL 93 (156)
T ss_pred HHHHHHHHHhh---CCCCEEEEEecCCeehHHHHHHHcC-CCceeEEEEEEECCCcCCcEEEecC-CCcCcCEEEEEeee
Confidence 56677777653 2457999999999999999999998 7752 3332221 1122222221 14699999999999
Q ss_pred ccchHHHHHHHHHHHH
Q 026473 202 IDTAGTIAKGAALLHQ 217 (238)
Q Consensus 202 i~TG~Tl~~a~~~Lk~ 217 (238)
+|||.|+.++.+.+++
T Consensus 94 iDTG~Tl~~v~~~l~~ 109 (156)
T PRK09177 94 VDTGGTARAVREMYPK 109 (156)
T ss_pred eCCHHHHHHHHHHHhh
Confidence 9999999999999975
No 64
>COG1926 Predicted phosphoribosyltransferases [General function prediction only]
Probab=99.18 E-value=2.2e-10 Score=94.61 Aligned_cols=104 Identities=25% Similarity=0.340 Sum_probs=80.6
Q ss_pred cccccHHHHHHHHhccCCCCCeEEEEeCCCchHHHHHHHHHcCCCCEEEE--EEEeCCC------------Cc-------
Q 026473 122 HVYCQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIV--DKRRHGH------------NV------- 180 (238)
Q Consensus 122 ~l~~~~~la~~i~~~~~~~~~~viv~pd~g~~~~a~~~a~~l~~~~~~~~--~k~r~~~------------~~------- 180 (238)
.-++...|++.|.+.. ..+++++.+...||++.|..+|+.|| +|+.++ +|--... +.
T Consensus 7 R~dAGr~La~~l~~~~-~~~~~iVlaLpRGGvpva~evA~~lg-a~ldvliVrKiG~P~n~E~aiGAvae~g~~v~n~~~ 84 (220)
T COG1926 7 RTDAGRKLAQELAALR-DLKDVIVLALPRGGVPVAFEVAQALG-APLDVLIVRKIGAPGNPELAIGAVAEGGDVVLNYDV 84 (220)
T ss_pred HHHHHHHHHHHHHhhc-cCCCcEEEEecCCCchHHHHHHHHhC-CCeeEEEEeecCCCCCchhceeeeccCCcEecchhh
Confidence 4457788999998753 24678999999999999999999999 898654 3332100 00
Q ss_pred -------------------EEE---------EEeccCCCCCEEEEEeCcccchHHHHHHHHHHHHCCCCEEEEEE
Q 026473 181 -------------------AEV---------MNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACC 227 (238)
Q Consensus 181 -------------------~~~---------~~~~~~v~gk~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~ 227 (238)
.++ .+..-+++||+||||||-+.||.||..+++.++++|+++|.+++
T Consensus 85 ~~~~~i~~~~i~~~~~~e~~El~rrr~~yr~~~~~~~~~g~~VIlVDDGiATGatm~aAi~~~r~~~~~~IviAV 159 (220)
T COG1926 85 VRSLGIDDAYIEAAAARERKELLRRREAYRGGRPVPSLKGRTVILVDDGIATGATMKAAVRALRAKGPKEIVIAV 159 (220)
T ss_pred hhhccCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEEeCCcchhHHHHHHHHHHHhcCCceEEEEc
Confidence 000 11223689999999999999999999999999999999999887
No 65
>COG2236 Predicted phosphoribosyltransferases [General function prediction only]
Probab=99.17 E-value=1.4e-10 Score=95.68 Aligned_cols=100 Identities=23% Similarity=0.281 Sum_probs=74.1
Q ss_pred ccHHHHHHHHhccCCCCCeEEEEeCCCchHHHHHHHHHcCCCCEEEEEEEeCCC-----CcEEEE-EeccC-CCCCEEEE
Q 026473 125 CQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGH-----NVAEVM-NLIGD-VKGKVAVM 197 (238)
Q Consensus 125 ~~~~la~~i~~~~~~~~~~viv~pd~g~~~~a~~~a~~l~~~~~~~~~k~r~~~-----~~~~~~-~~~~~-v~gk~vlI 197 (238)
....+|+.|.+.. .++.+|+++.+||+..|+.++..|+..|+..+.-..... +...+. ...-+ +.||+|||
T Consensus 15 ~~~~lA~kI~~s~--~~PDvIiaiaRGG~~pariLsd~L~~~~l~~i~v~~y~~~~~~~~~~~v~~~~~~d~l~GkkVLI 92 (192)
T COG2236 15 LCRALAEKIRASG--FKPDVIVAIARGGLIPARILSDFLGVKPLYSIKVEHYDETAERDGEAKVKYPITIDPLSGKKVLI 92 (192)
T ss_pred HHHHHHHHHHHcC--CCCCEEEEEcCCceehHHHHHHHhCCCceEEEEEEEehhhcccCCcceeecCccccccCCCeEEE
Confidence 4677888887653 467799999999999999999999944776554333211 122221 23335 89999999
Q ss_pred EeCcccchHHHHHHHHHHHHCCCCEEEEE
Q 026473 198 VDDMIDTAGTIAKGAALLHQEGAREVYAC 226 (238)
Q Consensus 198 VDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~ 226 (238)
||||.|||.||..|.+.|++..+..+..+
T Consensus 93 VDDI~DTG~Tl~~a~~~l~~~~p~e~rta 121 (192)
T COG2236 93 VDDIVDTGETLELALEELKKLAPAEVRTA 121 (192)
T ss_pred EecccCchHhHHHHHHHHHhhCchhhhhh
Confidence 99999999999999999999666555433
No 66
>PRK09246 amidophosphoribosyltransferase; Provisional
Probab=99.17 E-value=2.2e-10 Score=107.82 Aligned_cols=101 Identities=21% Similarity=0.209 Sum_probs=71.0
Q ss_pred HHHHHHHHhccCCCCCeEEEEeCCCchHHHHHHHHHcCCCCEEE-EEEEeCCC-C-----c------EE-EEE-eccCCC
Q 026473 127 PVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAI-VDKRRHGH-N-----V------AE-VMN-LIGDVK 191 (238)
Q Consensus 127 ~~la~~i~~~~~~~~~~viv~pd~g~~~~a~~~a~~l~~~~~~~-~~k~r~~~-~-----~------~~-~~~-~~~~v~ 191 (238)
..|++++.+.....+.++|++....+...|..+++.++ +|+.. +.|.|... . . ++ ... ....++
T Consensus 279 ~~LA~~l~~~~~~~~~D~VvpVP~s~~~~A~~la~~lg-ip~~~~l~k~~~~~rt~i~~~q~~R~~~vr~~f~~~~~~v~ 357 (501)
T PRK09246 279 EKLAEKIKREWPDLDIDVVIPIPDTSRDAALEIARILG-VPYREGFVKNRYVGRTFIMPGQAQRKKSVRQKLNAIRAEFK 357 (501)
T ss_pred HHHHHHHHHHhcCCCCcEEEEeCccHHHHHHHHHHHHC-CCccceEEEEecccccccCcCHHHHHHHHHhhcCCcccccc
Confidence 45555554443212235677777778999999999998 88742 22332210 0 0 00 112 234689
Q ss_pred CCEEEEEeCcccchHHHHHHHHHHHHCCCCEEEEEEE
Q 026473 192 GKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCT 228 (238)
Q Consensus 192 gk~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~t 228 (238)
||+|+||||+++||.|+.++++.|+++||++|++++.
T Consensus 358 gK~VlLVDDvitTGaTl~~~~~~L~~aGA~~V~v~v~ 394 (501)
T PRK09246 358 GKNVLLVDDSIVRGTTSEQIVQMAREAGAKKVYFASA 394 (501)
T ss_pred CCeEEEEeccccccHHHHHHHHHHHHcCCCEEEEEEE
Confidence 9999999999999999999999999999999999985
No 67
>PRK07349 amidophosphoribosyltransferase; Provisional
Probab=99.08 E-value=9.8e-10 Score=103.02 Aligned_cols=101 Identities=24% Similarity=0.223 Sum_probs=75.3
Q ss_pred cHHHHHHHHhccCCCCCeEEEEeCCCchHHHHHHHHHcCCCCEEE-EEEEeCC------CC--------cEEEEEeccCC
Q 026473 126 QPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAI-VDKRRHG------HN--------VAEVMNLIGDV 190 (238)
Q Consensus 126 ~~~la~~i~~~~~~~~~~viv~pd~g~~~~a~~~a~~l~~~~~~~-~~k~r~~------~~--------~~~~~~~~~~v 190 (238)
-..++++|++.. ..+.++|+++...|...|..+|+.+| +|+.. +.|.|.. .. ..+...+...+
T Consensus 298 R~~~G~~La~~~-~~~~DvVv~VP~sg~~~A~g~A~~lg-ip~~~~L~r~~y~grtfi~p~q~~R~~~~~~kl~~~~~~~ 375 (500)
T PRK07349 298 RQRLGQQLAKES-PVDADLVIGVPDSGIPAAIGFSQASG-IPYAEGLIKNRYVGRTFIQPTQSMRESGIRMKLNPLKDVL 375 (500)
T ss_pred HHHHHHHHhhhc-ccCCcEEEEeccccHHHHHHHHHHHC-CCchhceEEEeccCccccCCCHHHHHhhhheeeecccccc
Confidence 446777777654 23456888888889999999999999 89742 3344422 10 01111233457
Q ss_pred CCCEEEEEeCcccchHHHHHHHHHHHHCCCCEEEEEEE
Q 026473 191 KGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCT 228 (238)
Q Consensus 191 ~gk~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~t 228 (238)
+||+|+||||+++||.|+.++++.|+++||++|++..+
T Consensus 376 ~gkrVlLVDDvIttGtTl~~~~~~Lr~aGAkeV~~~i~ 413 (500)
T PRK07349 376 AGKRIIIVDDSIVRGTTSRKIVKALRDAGATEVHMRIS 413 (500)
T ss_pred CCCEEEEEeceeCCcHHHHHHHHHHHHhCCeEEEEEeC
Confidence 99999999999999999999999999999999999853
No 68
>TIGR01134 purF amidophosphoribosyltransferase. Alternate name: glutamine phosphoribosylpyrophosphate (PRPP) amidotransferase.
Probab=99.08 E-value=8.9e-10 Score=102.32 Aligned_cols=101 Identities=24% Similarity=0.222 Sum_probs=73.7
Q ss_pred cHHHHHHHHhccCCCCCeEEEEeCCCchHHHHHHHHHcCCCCEEE-EEEEeCC------CCc------E--EEEEeccCC
Q 026473 126 QPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAI-VDKRRHG------HNV------A--EVMNLIGDV 190 (238)
Q Consensus 126 ~~~la~~i~~~~~~~~~~viv~pd~g~~~~a~~~a~~l~~~~~~~-~~k~r~~------~~~------~--~~~~~~~~v 190 (238)
-..+.+.|+++.. .+.++|+++...|...|..+|+.++ .|+.. +.|.|.. ..+ . +.......+
T Consensus 259 R~~~g~~La~~~~-~~~D~Vv~VP~sg~~~A~~la~~lg-ip~~~~l~r~~~~~r~~i~~~q~~R~~~v~~k~~~~~~~~ 336 (442)
T TIGR01134 259 RKRMGEKLARESP-VEADVVIPVPDSGRSAALGFAQASG-IPYREGLIKNRYVGRTFIMPTQELRELSVRLKLNPIREVF 336 (442)
T ss_pred HHHHHHHHHHhcC-CCCEEEEEccCCHHHHHHHHHHHhC-CCchHHeEEeccccccccCCCHHHHHHHHhhhcccccccC
Confidence 3456677766542 3455677766678999999999998 88753 3343321 000 0 111233467
Q ss_pred CCCEEEEEeCcccchHHHHHHHHHHHHCCCCEEEEEEE
Q 026473 191 KGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCT 228 (238)
Q Consensus 191 ~gk~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~t 228 (238)
+||+|+||||+++||.|+.++++.|+++||++|++++.
T Consensus 337 ~gk~v~lvDD~ittG~T~~~~~~~l~~~ga~~v~~~~~ 374 (442)
T TIGR01134 337 RGKRVVLVDDSIVRGTTSRQIVKMLRDAGAKEVHVRIA 374 (442)
T ss_pred CCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEEEc
Confidence 99999999999999999999999999999999998876
No 69
>KOG3367 consensus Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=99.05 E-value=8.6e-10 Score=88.13 Aligned_cols=101 Identities=12% Similarity=0.226 Sum_probs=74.8
Q ss_pred cHHHHHHHHhccCCCCCeEEEEeCCCchHHHHHHHHHcCC------CCE--EEEEEEeCC----CCcEEEEE--eccCCC
Q 026473 126 QPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSD------APL--AIVDKRRHG----HNVAEVMN--LIGDVK 191 (238)
Q Consensus 126 ~~~la~~i~~~~~~~~~~viv~pd~g~~~~a~~~a~~l~~------~~~--~~~~k~r~~----~~~~~~~~--~~~~v~ 191 (238)
.+.||+-+.+.. ...+.++++..+||.+|..++.++|.+ .|+ ++++.+... .+.++++. ...+++
T Consensus 46 ~~rlakDi~~~~-g~~~i~~lcVlkG~ykF~adLve~l~n~~s~~~~pmtvDFIR~kSY~n~~stg~iqiig~d~l~~lt 124 (216)
T KOG3367|consen 46 VERLAKDIMKEI-GNKPIIFLCVLKGGYKFFADLVERLKNRNSDRPLPMTVDFIRAKSYCNDQSTGDIQIIGGDDLSTLT 124 (216)
T ss_pred HHHhhhhhhhcc-CCCceEEEEEecchhHHHHHHHHHHhhcccCCCcceeeeeeehhhhcCCcccCCceeecCCCHHHhc
Confidence 455666665553 456789999999999999999998753 343 344433221 12333331 223589
Q ss_pred CCEEEEEeCcccchHHHHHHHHHHHHCCCCEEEEEE
Q 026473 192 GKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACC 227 (238)
Q Consensus 192 gk~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~ 227 (238)
||+|+|||||++||.||......+++.+++.|.++.
T Consensus 125 gK~VliVeDIvdTGrTl~~Lls~~~~~k~~~v~vas 160 (216)
T KOG3367|consen 125 GKNVLIVEDIVDTGRTLSTLLSHMKAYKPSMVKVAS 160 (216)
T ss_pred CCcEEEEEeeccccchHHHHHHHHHhcCccceeeee
Confidence 999999999999999999999999999999999887
No 70
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=99.05 E-value=1.4e-09 Score=101.43 Aligned_cols=102 Identities=24% Similarity=0.247 Sum_probs=74.9
Q ss_pred HHHHHHHHhccCCCCCeEEEEeCCCchHHHHHHHHHcCCCCEEE-EEEEeCCC------Cc------EE-EEE-eccCCC
Q 026473 127 PVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAI-VDKRRHGH------NV------AE-VMN-LIGDVK 191 (238)
Q Consensus 127 ~~la~~i~~~~~~~~~~viv~pd~g~~~~a~~~a~~l~~~~~~~-~~k~r~~~------~~------~~-~~~-~~~~v~ 191 (238)
..+.+.|+++.. .+.++++++...|...|..+|+.+| +|+.. +.|+|... +. .+ ... ....++
T Consensus 270 ~~~G~~La~~~~-~~~D~vv~VP~s~~~~A~~~a~~~g-ip~~~~lik~~~~~rt~~~~~~~~R~~~v~~~f~~~~~~i~ 347 (471)
T PRK06781 270 KNMGKRLAAEAP-IEADVVTGVPDSSISAAIGYAEATG-IPYELGLIKNRYVGRTFIQPSQELREQGVKMKLSAVRGVVE 347 (471)
T ss_pred HHHHHHHhhhCC-CCCcEEEEcChhHHHHHHHHHHHhC-CCcccceEEEccCCCCCcCCCHHHHHHHHhcceeccccccC
Confidence 456666766542 3445777777788999999999999 88743 33333211 10 11 122 234579
Q ss_pred CCEEEEEeCcccchHHHHHHHHHHHHCCCCEEEEEEEcc
Q 026473 192 GKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHA 230 (238)
Q Consensus 192 gk~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~ 230 (238)
||+|+||||+++||.|+.++++.|+++||++|++..+-+
T Consensus 348 gk~VlLVDDvittGtTl~~~~~~Lk~aGA~eV~v~i~sP 386 (471)
T PRK06781 348 GKRVVMIDDSIVRGTTSKRIVRMLREAGATEVHVRIASP 386 (471)
T ss_pred CceEEEEeceeccchHHHHHHHHHHHcCCcEEEEEECCC
Confidence 999999999999999999999999999999999998655
No 71
>KOG1712 consensus Adenine phosphoribosyl transferases [Nucleotide transport and metabolism]
Probab=99.02 E-value=2.2e-09 Score=85.01 Aligned_cols=101 Identities=24% Similarity=0.307 Sum_probs=77.5
Q ss_pred HHHHHHHHhccCCCCCeEEEEeCCCchHHHHHHHHHcCCCCEEEEEEEeCCCCcE-------EE----EE-eccCC-CCC
Q 026473 127 PVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVA-------EV----MN-LIGDV-KGK 193 (238)
Q Consensus 127 ~~la~~i~~~~~~~~~~viv~pd~g~~~~a~~~a~~l~~~~~~~~~k~r~~~~~~-------~~----~~-~~~~v-~gk 193 (238)
..+++.+++.. ..+-.+|++.+..|+.|.-.+|-++| +.+.-++|..+-.+.. +. .. ..+.+ .|.
T Consensus 46 dlf~~h~~~~~-~~~Id~iaGlEaRGFLFGP~iAlalG-~~fVPiRK~gKLPG~~i~~~Y~lEYg~d~~Emq~~Ai~~g~ 123 (183)
T KOG1712|consen 46 DLFVDHYRETF-EMKIDVIAGLEARGFLFGPSIALALG-AGFVPIRKPGKLPGEVISESYELEYGEDRFEMQKGAIKPGQ 123 (183)
T ss_pred HHHHHHHHHHh-cCcceEEEeeeecceecCcHHHHHhC-CCeeecccCCCCCCceeEEEEeeecCccceeeeccccCCCC
Confidence 44555555543 34467999999999999999999999 8888888765433321 00 11 12345 589
Q ss_pred EEEEEeCcccchHHHHHHHHHHHHCCCCEEEEEEEc
Q 026473 194 VAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTH 229 (238)
Q Consensus 194 ~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH 229 (238)
+|+||||++.||+|+.+|.+++.+.||+-+.+.|.-
T Consensus 124 rvvvVDDllATGGTl~AA~~Ll~r~ga~vvE~~~vi 159 (183)
T KOG1712|consen 124 RVVVVDDLLATGGTLAAATELLERVGAEVVECACVI 159 (183)
T ss_pred eEEEEechhhcCccHHHHHHHHHHhccEEEEEEEEE
Confidence 999999999999999999999999999999988854
No 72
>PRK07631 amidophosphoribosyltransferase; Provisional
Probab=99.01 E-value=2.4e-09 Score=99.92 Aligned_cols=103 Identities=24% Similarity=0.243 Sum_probs=74.0
Q ss_pred cHHHHHHHHhccCCCCCeEEEEeCCCchHHHHHHHHHcCCCCEEE-EEEEeCCC-Cc-----------E-EEEE-eccCC
Q 026473 126 QPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAI-VDKRRHGH-NV-----------A-EVMN-LIGDV 190 (238)
Q Consensus 126 ~~~la~~i~~~~~~~~~~viv~pd~g~~~~a~~~a~~l~~~~~~~-~~k~r~~~-~~-----------~-~~~~-~~~~v 190 (238)
-..+.+.|++... .+.+++++....|...|..+|+.+| .|+.. +.|+|... .. . .... ..+.+
T Consensus 269 R~~~G~~La~~~~-~~~D~VvpVP~s~~~~A~gla~~~g-ip~~~~lik~~~~~Rt~i~~~~~~R~~nv~~~f~~~~~~v 346 (475)
T PRK07631 269 RKNLGKRLALEAP-VEADVVTGVPDSSISAAIGYAEATG-IPYELGLIKNRYVGRTFIQPSQALREQGVKMKLSPVRGVV 346 (475)
T ss_pred HHHHHHHHHhhCC-CCCcEEEEechhHHHHHHHHHHHHC-CCcccceEEEecCCCCCcCCCHHHHHHHHhhhhhhccccc
Confidence 3456666766542 3445777766678889999999998 88743 33433211 00 0 0111 23457
Q ss_pred CCCEEEEEeCcccchHHHHHHHHHHHHCCCCEEEEEEEcc
Q 026473 191 KGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHA 230 (238)
Q Consensus 191 ~gk~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~ 230 (238)
+||+|+||||+++||.|+.++++.|+++||++|++..+-+
T Consensus 347 ~gk~VlLVDDsittGtTl~~~~~~L~~aGA~eV~v~~~sP 386 (475)
T PRK07631 347 EGKRVVMVDDSIVRGTTSRRIVTMLREAGATEVHVRISSP 386 (475)
T ss_pred CCceEEEEeeeeccHHHHHHHHHHHHHcCCCEEEEEEeCC
Confidence 9999999999999999999999999999999999988655
No 73
>COG2065 PyrR Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=98.96 E-value=8.4e-09 Score=82.01 Aligned_cols=102 Identities=24% Similarity=0.314 Sum_probs=77.1
Q ss_pred cHHHHHHHHhccCCCCCeEEEEeCCCchHHHHHHHHHcCC-----CCEEEEE--EEeCCC---C----cEEEEEeccCCC
Q 026473 126 QPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSD-----APLAIVD--KRRHGH---N----VAEVMNLIGDVK 191 (238)
Q Consensus 126 ~~~la~~i~~~~~~~~~~viv~pd~g~~~~a~~~a~~l~~-----~~~~~~~--k~r~~~---~----~~~~~~~~~~v~ 191 (238)
..-++.+|.++....++++++++-.+|+..|..+++.++. .|+..++ -+|+.- + ..+...+..++.
T Consensus 16 itRia~eIiErnk~~~~~vlvGIktrGv~lA~rl~~~i~~~Eg~~vp~g~lDIt~yRDDl~~~~~~~p~~~~t~~~~di~ 95 (179)
T COG2065 16 ITRIAHEIIERNKGLDNLVLVGIKTRGVPLAERLAERIEELEGIEVPVGELDITLYRDDLTQKGPLRPQAKTTILPFDIT 95 (179)
T ss_pred HHHHHHHHHHHhCCCCceEEEeEecCCHHHHHHHHHHHHHHhCCCCCeeeEEeEEeechhhhcCccCCcccCccCccccc
Confidence 4456777777655567999999999999999999998752 3554443 345321 1 111123556899
Q ss_pred CCEEEEEeCcccchHHHHHHHHHHHHCC-CCEEEEEE
Q 026473 192 GKVAVMVDDMIDTAGTIAKGAALLHQEG-AREVYACC 227 (238)
Q Consensus 192 gk~vlIVDDii~TG~Tl~~a~~~Lk~~G-a~~V~~~~ 227 (238)
||+|++|||++-||.|+.+|.+.|...| +.+|..+|
T Consensus 96 ~k~VILVDDVLytGRTIRAAldal~d~GRPa~I~Lav 132 (179)
T COG2065 96 GKRVILVDDVLYTGRTIRAALDALVDYGRPAKIQLAV 132 (179)
T ss_pred CCEEEEEeeecccCccHHHHHHHHHhcCCcceEEEEE
Confidence 9999999999999999999999999999 66787776
No 74
>PRK06388 amidophosphoribosyltransferase; Provisional
Probab=98.92 E-value=7.7e-09 Score=96.59 Aligned_cols=102 Identities=23% Similarity=0.199 Sum_probs=71.2
Q ss_pred HHHHHHHHhccCCCCCeEEEEeCCCchHHHHHHHHHcCCCCEEE-EEEEeCCC------C------cEEEE--EeccCCC
Q 026473 127 PVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAI-VDKRRHGH------N------VAEVM--NLIGDVK 191 (238)
Q Consensus 127 ~~la~~i~~~~~~~~~~viv~pd~g~~~~a~~~a~~l~~~~~~~-~~k~r~~~------~------~~~~~--~~~~~v~ 191 (238)
..+.+.|.+... .+.++|+++...+...|..+|+.++ .|+.. +.|.|... . ..+.. .....++
T Consensus 278 ~~~G~~La~~~~-~~~D~VvpVP~s~~~~A~g~a~~~g-ip~~~~L~r~r~~~r~fi~~~q~~R~~~~~~kl~~~~~~i~ 355 (474)
T PRK06388 278 VRMGMRLAKESP-VEADVVVPVPDSGRSQAIGFSMASG-IPYTEGLIKNRYSERTFIMPTQSDRKAAIKLKLNPIREVIS 355 (474)
T ss_pred HHHHHHHHhhcc-CCCcEEEeeCCCcHHHHHHHHHHhC-CCchhheEEecccCCcccCCchhhhhhceeEEecccccccc
Confidence 456666666542 2344566655556778999999998 88742 34444321 0 01111 1223568
Q ss_pred CCEEEEEeCcccchHHHHHHHHHHHHCCCCEEEEEEEcc
Q 026473 192 GKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHA 230 (238)
Q Consensus 192 gk~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~ 230 (238)
||+|+||||+++||+|+.++++.|+++||++|++..+-+
T Consensus 356 gk~VlLVDDsittGtTl~~~~~~L~~aGak~V~~ri~sP 394 (474)
T PRK06388 356 GKRIVLVDDSIVRGNTMRFIVKIMRKYGAKEVHVRIGSP 394 (474)
T ss_pred CceEEEEeCeECcHHHHHHHHHHHHHcCCCEEEEEeCCC
Confidence 999999999999999999999999999999999987654
No 75
>PRK07847 amidophosphoribosyltransferase; Provisional
Probab=98.86 E-value=1.6e-08 Score=95.09 Aligned_cols=102 Identities=23% Similarity=0.192 Sum_probs=71.5
Q ss_pred HHHHHHHHhccCCCCCeEEEEeCCCchHHHHHHHHHcCCCCEEE-EEEEeCC------CC------cEEEE--EeccCCC
Q 026473 127 PVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAI-VDKRRHG------HN------VAEVM--NLIGDVK 191 (238)
Q Consensus 127 ~~la~~i~~~~~~~~~~viv~pd~g~~~~a~~~a~~l~~~~~~~-~~k~r~~------~~------~~~~~--~~~~~v~ 191 (238)
..+.+.|.++.. .+.++++++...|...|..+|+.+| .|+.. +.|.|.. .. ..+.. .+...++
T Consensus 289 ~~~G~~La~~~~-~~~D~VvpVP~sG~~~A~g~a~~~g-ip~~~~l~kn~~~grtfi~~~q~~r~~~~r~k~~~~~~~~~ 366 (510)
T PRK07847 289 VEIGRRLAREHP-VEADLVIPVPESGTPAAVGYAQESG-IPFGQGLVKNAYVGRTFIQPSQTIRQLGIRLKLNPLREVIR 366 (510)
T ss_pred HHHHHHHHhhCC-CCCeEEEeccCchHHHHHHHHHHhC-CChhhceEeecccccCccCcchhhhhhceeeecCccccccC
Confidence 456666766542 3445666644457999999999998 88743 3343211 00 11111 1223479
Q ss_pred CCEEEEEeCcccchHHHHHHHHHHHHCCCCEEEEEEEcc
Q 026473 192 GKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHA 230 (238)
Q Consensus 192 gk~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~ 230 (238)
||+|+||||+++||.|+.++++.|+++||++|++..+-+
T Consensus 367 gk~vllVDD~ittG~T~~~~~~~L~~~ga~~v~~ri~sP 405 (510)
T PRK07847 367 GKRLVVVDDSIVRGNTQRALVRMLREAGAAEVHVRISSP 405 (510)
T ss_pred CCEEEEEecccCchHHHHHHHHHHHHcCCCEEEEEECCC
Confidence 999999999999999999999999999999999887544
No 76
>COG0035 Upp Uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=98.79 E-value=5.1e-08 Score=81.03 Aligned_cols=88 Identities=17% Similarity=0.321 Sum_probs=74.8
Q ss_pred CCeEEEEeCCCchHHHHHHHHHcCCCCEEEEEEEeCCCCcE-EE--EEeccCCCCCEEEEEeCcccchHHHHHHHHHHHH
Q 026473 141 NDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVA-EV--MNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQ 217 (238)
Q Consensus 141 ~~~viv~pd~g~~~~a~~~a~~l~~~~~~~~~k~r~~~~~~-~~--~~~~~~v~gk~vlIVDDii~TG~Tl~~a~~~Lk~ 217 (238)
++.++|++.++|+.+...+.+.+..+.+..+--+|+.+... .. .+++.++++++|+|+|.|+.||+|+..|++.|++
T Consensus 70 ~~i~~V~ILRAGl~m~~gl~~~~P~a~vG~ig~~Rdeet~~p~~yy~KLP~~~~~~~viv~DPMLATG~s~i~ai~~L~~ 149 (210)
T COG0035 70 KKIVIVPILRAGLGMVEGLLKLIPSARVGHIGIYRDEETLEPVLYYEKLPEDIDERTVIVLDPMLATGGSAIAAIDLLKK 149 (210)
T ss_pred CcEEEEEEeeccccHHHHHHHhCCcceEEEEEEEecCccCceehhHHhCCCcccCCeEEEECchhhccHhHHHHHHHHHH
Confidence 45899999999999999999999877888888888765321 11 2566689999999999999999999999999999
Q ss_pred C-CCCEEEEEEE
Q 026473 218 E-GAREVYACCT 228 (238)
Q Consensus 218 ~-Ga~~V~~~~t 228 (238)
. |+++|.++|.
T Consensus 150 ~G~~~~I~~v~~ 161 (210)
T COG0035 150 RGGPKNIKVVSL 161 (210)
T ss_pred hCCCceEEEEEE
Confidence 9 8999988873
No 77
>PF14681 UPRTase: Uracil phosphoribosyltransferase; PDB: 1V9S_B 1UPF_A 1UPU_D 1JLR_B 1BD4_A 1BD3_C 1JLS_D 1XTV_C 1XTU_H 3G6W_C ....
Probab=98.74 E-value=1.4e-07 Score=79.18 Aligned_cols=88 Identities=16% Similarity=0.334 Sum_probs=72.7
Q ss_pred CCeEEEEeCCCchHHHHHHHHHcCCCCEEEEEEEeCCCC-cEEE--EEeccCCCCCEEEEEeCcccchHHHHHHHHHHHH
Q 026473 141 NDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHN-VAEV--MNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQ 217 (238)
Q Consensus 141 ~~~viv~pd~g~~~~a~~~a~~l~~~~~~~~~k~r~~~~-~~~~--~~~~~~v~gk~vlIVDDii~TG~Tl~~a~~~Lk~ 217 (238)
++.++|++.++|..+...+.+.+..+++..+.-+|+..+ ..+. .+++.++++++|+|+|.|++||+|+.++++.|++
T Consensus 67 ~~i~~V~IlRaG~~m~~~~~~~~p~a~~g~i~i~r~~~t~~p~~~y~~LP~~i~~~~VillDpmlaTG~s~~~ai~~L~~ 146 (207)
T PF14681_consen 67 DKICIVPILRAGLPMLEGFREVFPDARVGHIGIQRDEETLEPVLYYNKLPEDIENRKVILLDPMLATGGSAIAAIEILKE 146 (207)
T ss_dssp GCEEEEEETTTHHHHHHHHHHHSTTSEEEEEEEEEETTTSSEEEEEEE--TTGTTSEEEEEESEESSSHHHHHHHHHHHH
T ss_pred ccEEEEEEeCCcHHHHHHHHHhCCCcceEEEEEEEcCCccceeeeHhhCCCCccCCEEEEEeccccchhhHHHHHHHHHH
Confidence 478999999999999999999998788888877776542 2222 3677788999999999999999999999999999
Q ss_pred CCC--CEEEEEEE
Q 026473 218 EGA--REVYACCT 228 (238)
Q Consensus 218 ~Ga--~~V~~~~t 228 (238)
+|+ ++|.+++.
T Consensus 147 ~G~~~~~I~~v~~ 159 (207)
T PF14681_consen 147 HGVPEENIIIVSV 159 (207)
T ss_dssp TTG-GGEEEEEEE
T ss_pred cCCCcceEEEEEE
Confidence 987 67777764
No 78
>PLN02541 uracil phosphoribosyltransferase
Probab=98.70 E-value=1.9e-07 Score=80.08 Aligned_cols=86 Identities=21% Similarity=0.249 Sum_probs=68.6
Q ss_pred CeEEEEeCCCchHHHHHHHHHcCCCCEEEEEEEeCCCC-cEEE--EEeccCCC-CCEEEEEeCcccchHHHHHHHHHHHH
Q 026473 142 DLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHN-VAEV--MNLIGDVK-GKVAVMVDDMIDTAGTIAKGAALLHQ 217 (238)
Q Consensus 142 ~~viv~pd~g~~~~a~~~a~~l~~~~~~~~~k~r~~~~-~~~~--~~~~~~v~-gk~vlIVDDii~TG~Tl~~a~~~Lk~ 217 (238)
+.++|++.+.|..+...+.+.+.......+.-+|+..+ ..+. .+++.+++ +++|+|+|||+.||+|+.++++.|++
T Consensus 103 ~i~~V~ILRAGl~m~~g~~~~~P~a~vg~i~~~rd~~t~e~~~yy~kLP~~i~~~~~VlllDpmLATGgS~~~ai~~L~~ 182 (244)
T PLN02541 103 PVAVVPILRAGLVLLEHASSVLPATKTYHLGFVRDEETLQPSMYLNKLPDKFPEGSRVLVVDPMLATGGTIVAAIDELVS 182 (244)
T ss_pred cEEEEeEeCCcHhHHHHHHhhCCCCeeEEEEEEEcccccceEEeeccCchhcCCCCEEEEECcchhhhHHHHHHHHHHHH
Confidence 48999999999999999998887667777777776432 1111 24555675 68999999999999999999999999
Q ss_pred CCCC--EEEEEE
Q 026473 218 EGAR--EVYACC 227 (238)
Q Consensus 218 ~Ga~--~V~~~~ 227 (238)
+|++ +|.+++
T Consensus 183 ~Gv~~~~I~~v~ 194 (244)
T PLN02541 183 RGASVEQIRVVC 194 (244)
T ss_pred cCCCcccEEEEE
Confidence 9997 666665
No 79
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=98.60 E-value=1.2e-07 Score=86.58 Aligned_cols=102 Identities=25% Similarity=0.219 Sum_probs=75.9
Q ss_pred cHHHHHHHHhccCCCCCeEEEEeCCCchHHHHHHHHHcCCCCEEE-EEEEeCCCC--------------cEEEEEeccCC
Q 026473 126 QPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAI-VDKRRHGHN--------------VAEVMNLIGDV 190 (238)
Q Consensus 126 ~~~la~~i~~~~~~~~~~viv~pd~g~~~~a~~~a~~l~~~~~~~-~~k~r~~~~--------------~~~~~~~~~~v 190 (238)
-..+.+.|.++.. -+-++|++....|...|-.+|+.+| +|+.. +-|.|.... ..+...+...+
T Consensus 269 R~~mG~~La~e~~-~eaDvVipVPDSg~~aAig~A~~sG-iPy~~GliKNrYvgRTFI~P~q~~R~~~Vr~KLnpvr~~v 346 (470)
T COG0034 269 RKRMGEKLAEEIP-VEADVVIPVPDSGRPAAIGYARASG-IPYEEGLIKNRYVGRTFIMPTQELREKGVRLKLNPVREVV 346 (470)
T ss_pred HHHHHHHHHHhCC-ccccEEEecCCCChHHHHHHHHHhC-CchhhccccccccceeeeCCcHHHHHhhhhhhcCchHHHh
Confidence 3456666766642 3445888888889999999999999 88743 335553211 11111334468
Q ss_pred CCCEEEEEeCcccchHHHHHHHHHHHHCCCCEEEEEEEc
Q 026473 191 KGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTH 229 (238)
Q Consensus 191 ~gk~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH 229 (238)
+||+|++|||-|-.|.|+.+.+++|+++||++|++...-
T Consensus 347 ~GKrVvlVDDSIVRGTTsr~IV~mlReAGAkEVHvrias 385 (470)
T COG0034 347 KGKRVVLVDDSIVRGTTSRRIVQMLREAGAKEVHVRIAS 385 (470)
T ss_pred CCCeEEEEccccccCccHHHHHHHHHHhCCCEEEEEecC
Confidence 999999999999999999999999999999999987643
No 80
>TIGR01251 ribP_PPkin ribose-phosphate pyrophosphokinase. In some systems, close homologs lacking enzymatic activity exist and perform regulatory functions. The model is designated subfamily rather than equivalog for this reason.
Probab=98.12 E-value=3.8e-05 Score=68.30 Aligned_cols=116 Identities=20% Similarity=0.243 Sum_probs=87.3
Q ss_pred CCCceeeeeeeee-CCCceEEE-ecCCcCCCcEEEEecCCCCCchhHHHHHHHHHHHHhcCCCeEEEEecccCccccccc
Q 026473 1 MGVELGKINIKRF-ADGEIYVQ-LQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVIPYFGYARADRK 78 (238)
Q Consensus 1 l~~~~~~~~~~~F-~dGE~~v~-i~~~v~g~~v~ivqs~~~~~~~~l~ell~~~~a~~~~~a~~i~~viPY~~YsRqdr~ 78 (238)
||.++..++..++ ++||.... +.++++|++|+|+..+..+-. .++..++++++.||++|.++.+.--
T Consensus 181 Lg~~~~~i~k~r~~~~~~~~~~~~~~~v~g~~vliVDDii~tG~----Tl~~a~~~l~~~ga~~v~~~~th~v------- 249 (308)
T TIGR01251 181 LGCPLAIIDKRRISATNEVEVMNLVGDVEGKDVVIVDDIIDTGG----TIAKAAEILKSAGAKRVIAAATHGV------- 249 (308)
T ss_pred hCCCEEEEEEEecCCCCEEEEEecccccCCCEEEEEccccCCHH----HHHHHHHHHHhcCCCEEEEEEEeee-------
Confidence 5677888888888 78886665 356899999999999876532 5778889999999999999998311
Q ss_pred cCCCCchhHHHHHHHHHHhCCCEEEEEecCChhccCccCccCccccccHHHHHHHHhcc
Q 026473 79 TQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLASKT 137 (238)
Q Consensus 79 ~~~~~~~~~~~~a~ll~~~g~~~vi~vdlHs~~~~~~f~~~~~~l~~~~~la~~i~~~~ 137 (238)
..+ ..+.++. ..|++++++.|.|... .+|+ +...++..+.+++.|.+..
T Consensus 250 -~~~-----~a~~~l~-~~~~~~iv~tdt~~~~--~~~~-~~~~v~va~~la~~i~~~~ 298 (308)
T TIGR01251 250 -FSG-----PAIERIA-NAGVEEVIVTNTIPHE--KHKP-KVSVISVAPLIAEAIRRIH 298 (308)
T ss_pred -cCc-----HHHHHHH-hCCCCEEEEeCCCCcc--ccCC-CcEEEEhHHHHHHHHHHHh
Confidence 112 2234444 4689999999999764 3444 5778888999999997753
No 81
>KOG0572 consensus Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=98.11 E-value=6.9e-06 Score=73.55 Aligned_cols=87 Identities=26% Similarity=0.261 Sum_probs=64.3
Q ss_pred CeEEEEeCCCchHHHHHHHHHcCCCCEEE-EEEEeCCC------C--------cEEEEEeccCCCCCEEEEEeCcccchH
Q 026473 142 DLVVVSPDVGGVARARAFAKKLSDAPLAI-VDKRRHGH------N--------VAEVMNLIGDVKGKVAVMVDDMIDTAG 206 (238)
Q Consensus 142 ~~viv~pd~g~~~~a~~~a~~l~~~~~~~-~~k~r~~~------~--------~~~~~~~~~~v~gk~vlIVDDii~TG~ 206 (238)
-+++++....|..-|-.+|...| +|+.- +.|.|.-. + ..+...+...++||+|+||||-|--|.
T Consensus 292 ~DvVi~VPdS~~~aAlgyA~~sG-~py~e~l~rnrYvGRTFI~P~q~iR~~~V~~Kl~~l~~~~~GKrvvlVDDSIVRGt 370 (474)
T KOG0572|consen 292 ADVVIPVPDSGTTAALGYAAKSG-LPYQEVLIRNRYVGRTFIEPNQRIRQLGVKKKLGPLRQNFEGKRVVLVDDSIVRGT 370 (474)
T ss_pred cceEEecCCchhHHHHHHHHHhC-CchhhhhhhcccccceecCccHHHHHhhhhhhcccchhhcCCceEEEEecceeccC
Confidence 34556655566777888999998 88742 33444311 1 111224556789999999999999999
Q ss_pred HHHHHHHHHHHCCCCEEEEEEEc
Q 026473 207 TIAKGAALLHQEGAREVYACCTH 229 (238)
Q Consensus 207 Tl~~a~~~Lk~~Ga~~V~~~~tH 229 (238)
|+...+++||++||++|+....-
T Consensus 371 Ts~~IVkmlreaGAkeVh~riAs 393 (474)
T KOG0572|consen 371 TSSPIVKMLREAGAKEVHIRIAS 393 (474)
T ss_pred chHHHHHHHHHcCCcEEEEEecC
Confidence 99999999999999999987643
No 82
>PF15609 PRTase_2: Phosphoribosyl transferase
Probab=97.32 E-value=0.0018 Score=53.39 Aligned_cols=103 Identities=15% Similarity=0.102 Sum_probs=71.2
Q ss_pred ccccHHHHHHHHhccCCCCCeEEEEeCCCchHHHHHHHHHcCCCCEEEEEEEeCCCCc----EEE---------EE-ecc
Q 026473 123 VYCQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNV----AEV---------MN-LIG 188 (238)
Q Consensus 123 l~~~~~la~~i~~~~~~~~~~viv~pd~g~~~~a~~~a~~l~~~~~~~~~k~r~~~~~----~~~---------~~-~~~ 188 (238)
+.+...|++.+.+.. ..+.++++-..-+.-....+++.++. ...|+...|..-.. .+. .. ...
T Consensus 37 ~~~~~~La~~~~~~~--~~~~lvIGfAETATgLG~~V~~~~~~-~~~ylhTTR~~v~~~~~~~~F~E~HSHAt~h~ly~~ 113 (191)
T PF15609_consen 37 RDAGRLLAAQVPEAL--PGPVLVIGFAETATGLGHGVFDALGA-ACLYLHTTREPVPGVPPLLEFEEEHSHATDHLLYPP 113 (191)
T ss_pred HHHHHHHHHHHHHhC--CCCeEEEEEhHHHHHHHHHHHHHhhh-ccceeeeccccCCCCccceeeeccccccccceecCC
Confidence 345667777777654 35678999888888889999998873 33467766642111 100 01 111
Q ss_pred ---C-CCCCEEEEEeCcccchHHHHHHHHHHHHCCCCEEEEEEE
Q 026473 189 ---D-VKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCT 228 (238)
Q Consensus 189 ---~-v~gk~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~t 228 (238)
. -..+.+++|||=++||.|+..+++.|++.-+.+=+++++
T Consensus 114 ~~~~l~~~~~lVLVDDEiSTG~T~lnli~al~~~~p~~~yvvas 157 (191)
T PF15609_consen 114 DPDLLRNARTLVLVDDEISTGNTFLNLIRALHAKYPRKRYVVAS 157 (191)
T ss_pred ChHHhcCCCCEEEEecCccchHHHHHHHHHHHHhCCCceEEEEE
Confidence 1 246799999999999999999999999987776555554
No 83
>PF13793 Pribosyltran_N: N-terminal domain of ribose phosphate pyrophosphokinase; PDB: 2JI4_A 1DKU_B 1IBS_B 1DKR_B 3MBI_C 3LRT_B 3LPN_B 3NAG_B 2H07_B 2H06_B ....
Probab=97.28 E-value=0.0088 Score=45.62 Aligned_cols=84 Identities=18% Similarity=0.224 Sum_probs=57.2
Q ss_pred EEEeCCCchHHHHHHHHHcCCCCEEEEEEEeCCCCcEEEEEeccCCCCCEEEEEeCcccc--hH--HHHHHHHHHHHCCC
Q 026473 145 VVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDT--AG--TIAKGAALLHQEGA 220 (238)
Q Consensus 145 iv~pd~g~~~~a~~~a~~l~~~~~~~~~k~r~~~~~~~~~~~~~~v~gk~vlIVDDii~T--G~--Tl~~a~~~Lk~~Ga 220 (238)
++-...+.-.+|+.+++.|| .++..+.-.|-.+++..+ .+.++++|++|+||=.+... -. -+.-+++.+|+.||
T Consensus 2 ~I~~g~~~~~La~~ia~~L~-~~~~~~~~~~F~dGE~~v-~i~~~v~g~dv~iiqs~~~~~nd~lmeLll~i~a~r~~~a 79 (116)
T PF13793_consen 2 VIFSGSSSQDLAERIAEALG-IPLGKVETKRFPDGETYV-RIPESVRGKDVFIIQSTSPPVNDNLMELLLLIDALRRAGA 79 (116)
T ss_dssp EEEESSSGHHHHHHHHHHTT-S-EE-EEEEE-TTS-EEE-EESS--TTSEEEEE---SSSHHHHHHHHHHHHHHHHHTTB
T ss_pred EEEECCCCHHHHHHHHHHhC-CceeeeEEEEcCCCCEEE-EecccccCCceEEEEecCCchhHHHHHHHHHHHHHHHcCC
Confidence 34456778889999999999 888777767766666443 56778999999999998865 22 34566789999999
Q ss_pred CEEEEEEEcc
Q 026473 221 REVYACCTHA 230 (238)
Q Consensus 221 ~~V~~~~tH~ 230 (238)
++|.++..+-
T Consensus 80 ~~i~~ViPYl 89 (116)
T PF13793_consen 80 KRITLVIPYL 89 (116)
T ss_dssp SEEEEEESS-
T ss_pred cEEEEeccch
Confidence 9999988654
No 84
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=96.40 E-value=0.069 Score=48.01 Aligned_cols=85 Identities=13% Similarity=0.117 Sum_probs=64.9
Q ss_pred EEEEeCCCchHHHHHHHHHcCCCCEEEEEEEeCCCCcEEEEEeccCCCCCEEEEEeCcccc-hHH---HHHHHHHHHHCC
Q 026473 144 VVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDT-AGT---IAKGAALLHQEG 219 (238)
Q Consensus 144 viv~pd~g~~~~a~~~a~~l~~~~~~~~~k~r~~~~~~~~~~~~~~v~gk~vlIVDDii~T-G~T---l~~a~~~Lk~~G 219 (238)
+.+-.-.+...+|+.+|+.|| .++.-+..+|-.+++..+ .+..++.|++|+||-..... ... +.-+++.||++|
T Consensus 22 ~~i~~g~~~~~la~~ia~~lg-~~l~~~~~~~FpDGE~~v-~i~~~vrg~~V~ivqs~~~p~nd~l~eLll~~~alr~~g 99 (330)
T PRK02812 22 LRLFSGSSNPALAQEVARYLG-MDLGPMIRKRFADGELYV-QIQESIRGCDVYLIQPTCAPVNDHLMELLIMVDACRRAS 99 (330)
T ss_pred EEEEECCCCHHHHHHHHHHhC-CCceeeEEEECCCCCEEE-EeCCCCCCCEEEEECCCCCCccHHHHHHHHHHHHHHHhC
Confidence 344446778899999999999 888777777766666443 56678999999999986543 233 456678899999
Q ss_pred CCEEEEEEEcc
Q 026473 220 AREVYACCTHA 230 (238)
Q Consensus 220 a~~V~~~~tH~ 230 (238)
|++|.++..+-
T Consensus 100 a~ri~~ViPYl 110 (330)
T PRK02812 100 ARQITAVIPYY 110 (330)
T ss_pred CceEEEEEecc
Confidence 99999888654
No 85
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=96.31 E-value=0.086 Score=47.45 Aligned_cols=85 Identities=12% Similarity=0.087 Sum_probs=64.3
Q ss_pred EEEEeCCCchHHHHHHHHHcCCCCEEEEEEEeCCCCcEEEEEeccCCCCCEEEEEeCcccc-hHH---HHHHHHHHHHCC
Q 026473 144 VVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDT-AGT---IAKGAALLHQEG 219 (238)
Q Consensus 144 viv~pd~g~~~~a~~~a~~l~~~~~~~~~k~r~~~~~~~~~~~~~~v~gk~vlIVDDii~T-G~T---l~~a~~~Lk~~G 219 (238)
.++-...+...+|..+|+.|| .++.-+..+|-.+++..+ .+..+++|++|+||=++... -.. +.-.++.|+++|
T Consensus 10 ~~i~~~~~~~~La~~ia~~lg-~~l~~~~~~~FpdGE~~v-~i~~~vrg~dV~ivqs~~~p~nd~l~eLll~~~alr~~~ 87 (332)
T PRK00553 10 HVIFSLSKAKKLVDSICRKLS-MKPGEIVIQKFADGETYI-RFDESVRNKDVVIFQSTCSPVNDSLMELLIAIDALKRGS 87 (332)
T ss_pred eEEEECCCCHHHHHHHHHHhC-CceeeeEEEECCCCCEEE-EECCCCCCCEEEEEcCCCCCCchHHHHHHHHHHHHHHcC
Confidence 344445677889999999998 898888777777666443 55678999999999887543 222 456678899999
Q ss_pred CCEEEEEEEcc
Q 026473 220 AREVYACCTHA 230 (238)
Q Consensus 220 a~~V~~~~tH~ 230 (238)
|++|.++..+-
T Consensus 88 a~~i~~ViPYl 98 (332)
T PRK00553 88 AKSITAILPYY 98 (332)
T ss_pred CCeEEEEeecc
Confidence 99999888654
No 86
>PTZ00145 phosphoribosylpyrophosphate synthetase; Provisional
Probab=96.29 E-value=0.074 Score=49.48 Aligned_cols=87 Identities=10% Similarity=0.172 Sum_probs=66.0
Q ss_pred CCeEEEEeCCCchHHHHHHHHHcCCCCEEEEEEEeCCCCcEEEEEeccCCCCCEEEEEeCcccc-hH---HHHHHHHHHH
Q 026473 141 NDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDT-AG---TIAKGAALLH 216 (238)
Q Consensus 141 ~~~viv~pd~g~~~~a~~~a~~l~~~~~~~~~k~r~~~~~~~~~~~~~~v~gk~vlIVDDii~T-G~---Tl~~a~~~Lk 216 (238)
++.+|+ ...+...+|..+|+.|| .++.-+..+|-.+++..+ .+..++.|++|+||-..... -. -+.-+++.||
T Consensus 118 ~~m~I~-sgs~~~~LA~~IA~~Lg-~~l~~~~~~rFpDGE~~V-ri~e~VrG~dV~IVqS~~~pvNd~LmELLllidAlr 194 (439)
T PTZ00145 118 ENAILF-SGSSNPLLSKNIADHLG-TILGRVHLKRFADGEVSM-QFLESIRGKDVYIIQPTCPPVNENLIELLLMISTCR 194 (439)
T ss_pred CCeEEE-ECCCCHHHHHHHHHHhC-CCceeeEEEECCCCCEEE-EECCCcCCCeEEEEecCCCCCcHHHHHHHHHHHHHH
Confidence 344444 56777899999999999 898888877877776543 46678999999999986543 22 2445668899
Q ss_pred HCCCCEEEEEEEcc
Q 026473 217 QEGAREVYACCTHA 230 (238)
Q Consensus 217 ~~Ga~~V~~~~tH~ 230 (238)
++||++|.++..+-
T Consensus 195 ~agAkrItlViPYl 208 (439)
T PTZ00145 195 RASAKKITAVIPYY 208 (439)
T ss_pred HhccCeEEEEeecc
Confidence 99999999988654
No 87
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=96.15 E-value=0.11 Score=46.54 Aligned_cols=87 Identities=14% Similarity=0.145 Sum_probs=64.7
Q ss_pred CCeEEEEeCCCchHHHHHHHHHcCCCCEEEEEEEeCCCCcEEEEEeccCCCCCEEEEEeCcccc----hHHHHHHHHHHH
Q 026473 141 NDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDT----AGTIAKGAALLH 216 (238)
Q Consensus 141 ~~~viv~pd~g~~~~a~~~a~~l~~~~~~~~~k~r~~~~~~~~~~~~~~v~gk~vlIVDDii~T----G~Tl~~a~~~Lk 216 (238)
++..++ ...+...+|+.+|+.|| .++..+...|-.+++..+ .+..+++|++|+||-.+... =--+.-+++.||
T Consensus 4 ~~~~i~-~~~~~~~la~~ia~~lg-~~l~~~~~~~FpdGE~~v-~i~~~vrg~dV~iv~s~~~~~nd~lmelll~~~alr 80 (320)
T PRK02269 4 SDLKLF-ALSSNKELAEKVAQEIG-IELGKSSVRQFSDGEIQV-NIEESIRGHHVFILQSTSSPVNDNLMEILIMVDALK 80 (320)
T ss_pred CCeEEE-ECCCCHHHHHHHHHHhC-CceeeeEEEECCCCCEEE-EECCCCCCCEEEEEecCCCCccchHHHHHHHHHHHH
Confidence 344444 45677889999999998 888777777766666433 56678999999999876432 223566778999
Q ss_pred HCCCCEEEEEEEcc
Q 026473 217 QEGAREVYACCTHA 230 (238)
Q Consensus 217 ~~Ga~~V~~~~tH~ 230 (238)
++||++|.++..+-
T Consensus 81 ~~~a~~i~~V~PYl 94 (320)
T PRK02269 81 RASAESINVVMPYY 94 (320)
T ss_pred HhCCCeEEEEEecc
Confidence 99999999888654
No 88
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=96.06 E-value=0.14 Score=45.81 Aligned_cols=85 Identities=13% Similarity=0.116 Sum_probs=63.1
Q ss_pred EEEEeCCCchHHHHHHHHHcCCCCEEEEEEEeCCCCcEEEEEeccCCCCCEEEEEeCcccchH----HHHHHHHHHHHCC
Q 026473 144 VVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAG----TIAKGAALLHQEG 219 (238)
Q Consensus 144 viv~pd~g~~~~a~~~a~~l~~~~~~~~~k~r~~~~~~~~~~~~~~v~gk~vlIVDDii~TG~----Tl~~a~~~Lk~~G 219 (238)
+++-...+...+|+.+|+.|| .++..+..+|-.+++..+ .+..++.|++|+||=....... -+.-+++.||++|
T Consensus 7 ~~i~~g~~~~~La~~ia~~lg-~~l~~~~~~~FpdGE~~v-~i~~~v~g~~V~iiqs~~~p~nd~lmeLl~~~~alr~~~ 84 (319)
T PRK04923 7 LLVFSGNANKPLAQSICKELG-VRMGKALVTRFSDGEVQV-EIEESVRRQEVFVIQPTCAPSAENLMELLVLIDALKRAS 84 (319)
T ss_pred eEEEECCCCHHHHHHHHHHhC-CceeeeEEEECCCCCEEE-EECCCcCCCeEEEEecCCCCCchHHHHHHHHHHHHHHcC
Confidence 344455677889999999999 898877777776666543 5567899999999966543221 2455678889999
Q ss_pred CCEEEEEEEcc
Q 026473 220 AREVYACCTHA 230 (238)
Q Consensus 220 a~~V~~~~tH~ 230 (238)
|++|.++..+-
T Consensus 85 a~~i~~ViPYl 95 (319)
T PRK04923 85 AASVTAVIPYF 95 (319)
T ss_pred CcEEEEEeecc
Confidence 99999887653
No 89
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=96.05 E-value=0.13 Score=45.66 Aligned_cols=83 Identities=20% Similarity=0.166 Sum_probs=62.8
Q ss_pred EeCCCchHHHHHHHHHcCCCCEEEEEEEeCCCCcEEEEEeccCCCCCEEEEEeCcccchH---HHHHHHHHHHHCCCCEE
Q 026473 147 SPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAG---TIAKGAALLHQEGAREV 223 (238)
Q Consensus 147 ~pd~g~~~~a~~~a~~l~~~~~~~~~k~r~~~~~~~~~~~~~~v~gk~vlIVDDii~TG~---Tl~~a~~~Lk~~Ga~~V 223 (238)
-...+...+|..+|+.|| .++..+...|..+++..+ .+..+++|++|+||-....--. -+.-.++.||++||++|
T Consensus 6 ~~~~~~~~la~~ia~~lg-~~~~~~~~~~F~dGE~~v-~i~~~v~g~~V~ivqs~~~~n~~l~elll~~~alr~~~a~~i 83 (301)
T PRK07199 6 LALPGNEAAAGRLAAALG-VEVGRIELHRFPDGESYV-RLDSPVAGRTVVLVCSLDRPDEKLLPLLFAAEAARELGARRV 83 (301)
T ss_pred EECCCCHHHHHHHHHHhC-CceeeeEEEECCCCCEEE-EECCCCCCCEEEEECCCCCCcHHHHHHHHHHHHHHHcCCCeE
Confidence 345667889999999999 898888777776666543 4566899999999998764322 24456678899999999
Q ss_pred EEEEEccc
Q 026473 224 YACCTHAV 231 (238)
Q Consensus 224 ~~~~tH~~ 231 (238)
.++...--
T Consensus 84 ~~ViPY~~ 91 (301)
T PRK07199 84 GLVAPYLA 91 (301)
T ss_pred EEEeeccc
Confidence 98876543
No 90
>PRK00934 ribose-phosphate pyrophosphokinase; Provisional
Probab=95.76 E-value=0.19 Score=44.28 Aligned_cols=80 Identities=19% Similarity=0.270 Sum_probs=60.4
Q ss_pred CCCchHHHHHHHHHcCCCCEEEEEEEeCCCCcEEEEEeccCCCCCEEEEEeCcccchH---HHHHHHHHHHHCCCCEEEE
Q 026473 149 DVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAG---TIAKGAALLHQEGAREVYA 225 (238)
Q Consensus 149 d~g~~~~a~~~a~~l~~~~~~~~~k~r~~~~~~~~~~~~~~v~gk~vlIVDDii~TG~---Tl~~a~~~Lk~~Ga~~V~~ 225 (238)
..+...+|+.+|+.|| .++..+..+|-.+++..+ .+..+++|++|+|+-..-+-.. -+.-.++.||++||++|.+
T Consensus 5 ~~~~~~la~~ia~~l~-~~~~~~~~~~FpdGE~~v-~i~~~v~g~~v~i~~~~~~~~d~l~ell~~~~alr~~ga~~i~~ 82 (285)
T PRK00934 5 GSASQLLASEVARLLN-TELALVETKRFPDGELYV-RILGEIDGEDVVIISTTYPQDENLVELLLLIDALRDEGAKSITL 82 (285)
T ss_pred CCCCHHHHHHHHHHHC-CceEeeEEEECCCCCEEE-EECCCcCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCCeEEE
Confidence 3556788999999998 898888888877776543 4566899999999887543233 2445678899999999998
Q ss_pred EEEcc
Q 026473 226 CCTHA 230 (238)
Q Consensus 226 ~~tH~ 230 (238)
+..+-
T Consensus 83 v~PY~ 87 (285)
T PRK00934 83 VIPYL 87 (285)
T ss_pred EecCC
Confidence 87653
No 91
>PRK01259 ribose-phosphate pyrophosphokinase; Provisional
Probab=95.74 E-value=0.19 Score=44.83 Aligned_cols=80 Identities=18% Similarity=0.172 Sum_probs=59.8
Q ss_pred CCCchHHHHHHHHHcCCCCEEEEEEEeCCCCcEEEEEeccCCCCCEEEEEeCcccc-hHH---HHHHHHHHHHCCCCEEE
Q 026473 149 DVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDT-AGT---IAKGAALLHQEGAREVY 224 (238)
Q Consensus 149 d~g~~~~a~~~a~~l~~~~~~~~~k~r~~~~~~~~~~~~~~v~gk~vlIVDDii~T-G~T---l~~a~~~Lk~~Ga~~V~ 224 (238)
..+...+|..+|+.|| .++..+..++-.+++..+ .+..++.|++|+|+=.+... -.. +.-+++.+|++||++|.
T Consensus 6 ~~~~~~la~~ia~~lg-~~~~~~~~~~FpdGE~~v-ri~~~v~g~~V~ii~s~~~~~nd~l~eLll~~~alr~~ga~~i~ 83 (309)
T PRK01259 6 GNANPELAEKIAKYLG-IPLGKASVGRFSDGEISV-EINENVRGKDVFIIQSTCAPTNDNLMELLIMIDALKRASAGRIT 83 (309)
T ss_pred CCCCHHHHHHHHHHhC-CceeeeEEEECCCCCEEE-EeCCCCCCCEEEEECCCCCCCcHHHHHHHHHHHHHHHcCCceEE
Confidence 5667789999999999 888777767766666433 45668999999999765322 222 55677889999999999
Q ss_pred EEEEcc
Q 026473 225 ACCTHA 230 (238)
Q Consensus 225 ~~~tH~ 230 (238)
++..+-
T Consensus 84 lViPYl 89 (309)
T PRK01259 84 AVIPYF 89 (309)
T ss_pred EEeecc
Confidence 887653
No 92
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=95.60 E-value=0.32 Score=43.65 Aligned_cols=85 Identities=12% Similarity=0.097 Sum_probs=63.6
Q ss_pred EEEEeCCCchHHHHHHHHHcCCCCEEEEEEEeCCCCcEEEEEeccCCCCCEEEEEeCcccc-hHH---HHHHHHHHHHCC
Q 026473 144 VVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDT-AGT---IAKGAALLHQEG 219 (238)
Q Consensus 144 viv~pd~g~~~~a~~~a~~l~~~~~~~~~k~r~~~~~~~~~~~~~~v~gk~vlIVDDii~T-G~T---l~~a~~~Lk~~G 219 (238)
+++-...+...+|..+|+.|| .++..+..+|-.+++..+ .+..+++|++|+||-..... -.. +.-.++.||++|
T Consensus 10 ~~i~~~~~~~~la~~ia~~lg-~~l~~~~~~~FpdGE~~v-~i~~~v~g~dV~ii~s~~~~~nd~l~eLll~~~alr~~~ 87 (323)
T PRK02458 10 IKLFSLNSNLEIAEKIAQAAG-VPLGKLSSRQFSDGEIMI-NIEESVRGDDIYIIQSTSFPVNDHLWELLIMIDACKRAS 87 (323)
T ss_pred eEEEECCCCHHHHHHHHHHhC-CceeeeEEEECCCCCEEE-EecCCcCCCeEEEEecCCCCCchHHHHHHHHHHHHHHcC
Confidence 455556777889999999999 898888777776666433 55668999999999876432 223 445567889999
Q ss_pred CCEEEEEEEcc
Q 026473 220 AREVYACCTHA 230 (238)
Q Consensus 220 a~~V~~~~tH~ 230 (238)
|++|.++...-
T Consensus 88 a~~i~lViPYl 98 (323)
T PRK02458 88 ANTVNVVLPYF 98 (323)
T ss_pred CceEEEEEecc
Confidence 99999887653
No 93
>PLN02369 ribose-phosphate pyrophosphokinase
Probab=95.46 E-value=0.16 Score=45.08 Aligned_cols=75 Identities=16% Similarity=0.113 Sum_probs=57.3
Q ss_pred HHHHHHHHHcCCCCEEEEEEEeCCCCcEEEEEeccCCCCCEEEEEeCcccc-hH---HHHHHHHHHHHCCCCEEEEEEEc
Q 026473 154 ARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDT-AG---TIAKGAALLHQEGAREVYACCTH 229 (238)
Q Consensus 154 ~~a~~~a~~l~~~~~~~~~k~r~~~~~~~~~~~~~~v~gk~vlIVDDii~T-G~---Tl~~a~~~Lk~~Ga~~V~~~~tH 229 (238)
.+|..+|+.|| .++..+..+|-.+++..+ .+..+++|++|+||-..... -. -+.-.++.||++||++|.++..+
T Consensus 2 ~lA~~ia~~lg-~~l~~~~~~~FpdGE~~v-~i~~~v~g~~V~iv~s~~~p~nd~l~eLl~~~~a~r~~~a~~i~~ViPY 79 (302)
T PLN02369 2 ALSQEIACYLG-LELGKITIKRFADGEIYV-QLQESVRGCDVFLVQPTCPPANENLMELLIMIDACRRASAKRITAVIPY 79 (302)
T ss_pred hHHHHHHHHhC-CceeeeEEEECCCCCEEE-EECCCCCCCeEEEEecCCCCcchHHHHHHHHHHHHHHcCCCeEEEEeec
Confidence 46889999998 898887777777666543 45678999999999986632 22 24566789999999999888765
Q ss_pred c
Q 026473 230 A 230 (238)
Q Consensus 230 ~ 230 (238)
-
T Consensus 80 l 80 (302)
T PLN02369 80 F 80 (302)
T ss_pred c
Confidence 4
No 94
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=95.42 E-value=0.36 Score=44.27 Aligned_cols=88 Identities=14% Similarity=0.121 Sum_probs=60.2
Q ss_pred CeEEEEeCCCchHHHHHHHHHc---------------C----CCC--EEEEEEEeCCCCcEEEEEeccCCCCCEEEEEeC
Q 026473 142 DLVVVSPDVGGVARARAFAKKL---------------S----DAP--LAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDD 200 (238)
Q Consensus 142 ~~viv~pd~g~~~~a~~~a~~l---------------~----~~~--~~~~~k~r~~~~~~~~~~~~~~v~gk~vlIVDD 200 (238)
+..+++ ..++..+|+.+|+.| | +.+ +.-+...|-.+++..+ .+..+++|++|+||-.
T Consensus 8 ~~~i~~-~~~~~~la~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~FpDGE~~v-ri~~~Vrg~dV~ivqs 85 (382)
T PRK06827 8 SLGIIA-LPSCRELADKVDEHLVRIRERKENENIESLAFKGYSRESYLIPAKFIRFSNGEAKG-EILESVRGKDIYILQD 85 (382)
T ss_pred ceEEEE-CCCCHHHHHHHHHHHHHhhhhccccccccccccccCCcceeeeeEEEECCCCCEEE-EECCCCCCCeEEEEec
Confidence 434444 567788899999888 2 134 5555556666565433 5667899999999999
Q ss_pred ccc---------------chHHHHH---HHHHHHHCCCCEEEEEEEcccc
Q 026473 201 MID---------------TAGTIAK---GAALLHQEGAREVYACCTHAVF 232 (238)
Q Consensus 201 ii~---------------TG~Tl~~---a~~~Lk~~Ga~~V~~~~tH~~f 232 (238)
+.. .-..+.+ +++.|| +||++|.++..+--.
T Consensus 86 ~~~~~v~~~~~~~~~~~p~nd~lmeLll~idalr-agA~rIt~ViPY~~Y 134 (382)
T PRK06827 86 VGNYSVTYNMFGEKNHMSPDDHFQDLKRTIDAIR-GKARRITVIMPFLYE 134 (382)
T ss_pred CCcccccccccccccCCCCcHHHHHHHHHHHHHh-cCCCeEEEEeecccc
Confidence 752 2333444 778999 999999998866433
No 95
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=95.38 E-value=0.25 Score=43.96 Aligned_cols=79 Identities=18% Similarity=0.214 Sum_probs=61.6
Q ss_pred CCchHHHHHHHHHcCCCCEEEEEEEeCCCCcEEEEEeccCCCCCEEEEEeCcccchH-H---HHHHHHHHHHCCCCEEEE
Q 026473 150 VGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAG-T---IAKGAALLHQEGAREVYA 225 (238)
Q Consensus 150 ~g~~~~a~~~a~~l~~~~~~~~~k~r~~~~~~~~~~~~~~v~gk~vlIVDDii~TG~-T---l~~a~~~Lk~~Ga~~V~~ 225 (238)
...-.+|+.+++.|+ .|+.-+...|-.+++.. ..+.++++|++|.|+........ . +.-.++.||++||++|.+
T Consensus 11 ~s~~~La~~ia~~l~-~~l~~~~~~rF~DGE~~-V~i~EsVrg~dVfI~qs~~~pvnd~lmELLi~idA~k~asA~~It~ 88 (314)
T COG0462 11 SSNPELAEKIAKRLG-IPLGKVEVKRFPDGEIY-VRIEESVRGKDVFIIQSTSPPVNDNLMELLIMIDALKRASAKRITA 88 (314)
T ss_pred CCCHHHHHHHHHHhC-CCcccceeEEcCCCcEE-EEecccccCCeEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCceEEE
Confidence 666778999999998 88877777777666643 36677999999999988877444 2 444568899999999998
Q ss_pred EEEcc
Q 026473 226 CCTHA 230 (238)
Q Consensus 226 ~~tH~ 230 (238)
+...-
T Consensus 89 ViPY~ 93 (314)
T COG0462 89 VIPYF 93 (314)
T ss_pred Eeecc
Confidence 87543
No 96
>PLN02297 ribose-phosphate pyrophosphokinase
Probab=95.31 E-value=0.39 Score=43.13 Aligned_cols=86 Identities=12% Similarity=0.037 Sum_probs=63.5
Q ss_pred eEEEEeCCCchHHHHHHHHHc-CCCCEEEEEEEeCCCCcEEEE-EeccCCCCCEEEEEeCcccchHHH---HHHHHHHHH
Q 026473 143 LVVVSPDVGGVARARAFAKKL-SDAPLAIVDKRRHGHNVAEVM-NLIGDVKGKVAVMVDDMIDTAGTI---AKGAALLHQ 217 (238)
Q Consensus 143 ~viv~pd~g~~~~a~~~a~~l-~~~~~~~~~k~r~~~~~~~~~-~~~~~v~gk~vlIVDDii~TG~Tl---~~a~~~Lk~ 217 (238)
.+++-...+...+|+.+|+.+ | .++.-+..+|-.+++.++. ....+++|++|+||=-.... .-+ .-+++.|++
T Consensus 16 ~~~i~~g~~~~~LA~~ia~~l~g-~~l~~~~~~~FpDGE~~v~v~~~~~vrg~~V~ivqs~~~p-d~lmELLl~~dAlr~ 93 (326)
T PLN02297 16 QVHLFYCEETEELARKIAAESDA-IELGSINWRKFPDGFPNLFINNAHGIRGQHVAFLASFSSP-AVIFEQLSVIYALPK 93 (326)
T ss_pred CeEEEECCCCHHHHHHHHHHhCC-CceeeeEEEECCCCCEEEEEcCCCCcCCCeEEEECCCCCC-hHHHHHHHHHHHHHH
Confidence 345555677789999999986 6 8988888888777754432 34568999999999775543 333 345678899
Q ss_pred CCCCEEEEEEEcc
Q 026473 218 EGAREVYACCTHA 230 (238)
Q Consensus 218 ~Ga~~V~~~~tH~ 230 (238)
+||++|.++...-
T Consensus 94 ~ga~~i~~ViPY~ 106 (326)
T PLN02297 94 LFVASFTLVLPFF 106 (326)
T ss_pred cCCCEEEEEeeCC
Confidence 9999999988654
No 97
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=94.88 E-value=0.28 Score=43.62 Aligned_cols=73 Identities=14% Similarity=0.076 Sum_probs=55.3
Q ss_pred HHHHHHHcCCCCEEEEEEEeCCCCcEEEEEeccCCCCCEEEEEeCcccc-hHH---HHHHHHHHHHCCCCEEEEEEEcc
Q 026473 156 ARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDT-AGT---IAKGAALLHQEGAREVYACCTHA 230 (238)
Q Consensus 156 a~~~a~~l~~~~~~~~~k~r~~~~~~~~~~~~~~v~gk~vlIVDDii~T-G~T---l~~a~~~Lk~~Ga~~V~~~~tH~ 230 (238)
|+.+|+.|| .++.-+..+|-.+++..+ .+..+++|++|+||--.... ... +.-.++.||++||++|.++...-
T Consensus 2 a~~ia~~l~-~~l~~~~~~~F~DGE~~v-ri~~~v~g~~v~ii~s~~~p~nd~l~ell~~~~a~r~~~a~~i~~ViPYl 78 (304)
T PRK03092 2 AEEVAKELG-VEVTPTTAYDFANGEIYV-RFEESVRGCDAFVLQSHTAPINKWLMEQLIMIDALKRASAKRITVVLPFY 78 (304)
T ss_pred HHHHHHHhC-CceeeeEEEECCCCCEEE-EECCCCCCCEEEEEeCCCCCCcHHHHHHHHHHHHHHHcCCCeEEEEEecc
Confidence 678899998 888877777776666433 55678999999998876543 222 45677889999999999887654
No 98
>KOG1017 consensus Predicted uracil phosphoribosyltransferase [General function prediction only]
Probab=94.50 E-value=0.069 Score=44.33 Aligned_cols=37 Identities=19% Similarity=0.402 Sum_probs=34.3
Q ss_pred EeccCCCCCEEEEEeCcccchHHHHHHHHHHHHCCCC
Q 026473 185 NLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAR 221 (238)
Q Consensus 185 ~~~~~v~gk~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~ 221 (238)
.++.|+-.|+|++.=.+++||.|+.+|++.|+++|..
T Consensus 182 rfppDI~sR~VLLmYPi~stGnTV~~Av~VL~EhgVp 218 (267)
T KOG1017|consen 182 RFPPDITSRRVLLMYPIISTGNTVCKAVEVLKEHGVP 218 (267)
T ss_pred ecCCcccceeEEEEeeeecCCccHHHHHHHHHHcCCC
Confidence 5667899999999999999999999999999999965
No 99
>PF14572 Pribosyl_synth: Phosphoribosyl synthetase-associated domain; PDB: 2H07_B 2H06_B 3S5J_B 2HCR_A 3EFH_A 2H08_A 1DKR_B 1DKU_B 1IBS_B 2JI4_A ....
Probab=93.88 E-value=0.21 Score=41.13 Aligned_cols=97 Identities=12% Similarity=0.152 Sum_probs=63.1
Q ss_pred EEecCCcCCCcEEEEecCCCCCchhHHHHHHHHHHHHhcCCCeEEEEecccCccccccccCCCCchhHHHHHHHHHHhCC
Q 026473 20 VQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGA 99 (238)
Q Consensus 20 v~i~~~v~g~~v~ivqs~~~~~~~~l~ell~~~~a~~~~~a~~i~~viPY~~YsRqdr~~~~~~~~~~~~~a~ll~~~g~ 99 (238)
+.+-.+|.|++++|+..+..... -+.-.++.||+.||++|.++..+-=++.. -.+.|+...+
T Consensus 75 ~~vVGDV~gk~~IIvDDiIdtg~----Tl~~aA~~Lk~~GA~~V~~~aTHgvfs~~--------------A~~~l~~s~I 136 (184)
T PF14572_consen 75 MNVVGDVKGKICIIVDDIIDTGG----TLIKAAELLKERGAKKVYACATHGVFSGD--------------APERLEESPI 136 (184)
T ss_dssp EEEES--TTSEEEEEEEEESSTH----HHHHHHHHHHHTTESEEEEEEEEE---TT--------------HHHHHHHSSE
T ss_pred eEEEEEccCCeEeeecccccchH----HHHHHHHHHHHcCCCEEEEEEeCcccCch--------------HHHHHhhcCC
Confidence 45568999999999988764332 36778889999999999998877655531 2345677789
Q ss_pred CEEEEEecC--ChhccCccCccCccccccHHHHHHHHhc
Q 026473 100 DRVLACDLH--SGQSMGYFDIPVDHVYCQPVILDYLASK 136 (238)
Q Consensus 100 ~~vi~vdlH--s~~~~~~f~~~~~~l~~~~~la~~i~~~ 136 (238)
++|++-|-. ..+... .-.+..++-++.|++.|.+-
T Consensus 137 d~vvvTnTIp~~~~~~~--~~Ki~vldis~llaeaI~ri 173 (184)
T PF14572_consen 137 DEVVVTNTIPQEEQKLQ--CPKIKVLDISPLLAEAIRRI 173 (184)
T ss_dssp SEEEEETTS--HHHHHH---TTEEEE--HHHHHHHHHHH
T ss_pred eEEEEeccccCchhhhc--CCCEeEeehHHHHHHHHHHH
Confidence 999998843 222111 12355677788999988764
No 100
>PF15610 PRTase_3: PRTase ComF-like
Probab=89.25 E-value=0.53 Score=40.94 Aligned_cols=38 Identities=21% Similarity=0.260 Sum_probs=33.9
Q ss_pred CCCCCEEEEEeCcccchHHHHHHHHHHHHCCCCEEEEE
Q 026473 189 DVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYAC 226 (238)
Q Consensus 189 ~v~gk~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~ 226 (238)
.++||.||.+|||--||++=....+.+++.|++...++
T Consensus 135 ~l~gk~lIflDDIkITGshE~~V~~~~~~~~~~~~~~y 172 (274)
T PF15610_consen 135 FLSGKHLIFLDDIKITGSHEDKVRKILKEYGLENDFIY 172 (274)
T ss_pred HhCCcEEEEeccEEecCcHHHHHHHHHHHcCccccEEE
Confidence 47999999999999999999999999999999874443
No 101
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=86.92 E-value=13 Score=30.15 Aligned_cols=113 Identities=22% Similarity=0.308 Sum_probs=70.5
Q ss_pred HHHHHHhCCCEEEEEecCChhccCccCccCccccccHHHHHHHHhccCCCCCeEEEEeCCCchHHHHHHHHHcCCCCEEE
Q 026473 91 ANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAI 170 (238)
Q Consensus 91 a~ll~~~g~~~vi~vdlHs~~~~~~f~~~~~~l~~~~~la~~i~~~~~~~~~~viv~pd~g~~~~a~~~a~~l~~~~~~~ 170 (238)
.+.|...|+..+++ |+-+- =+|.++-++.|++-+|+.+.-..+-..+|+ .++.-.|+..+++.|+ .|+.+
T Consensus 20 ~~~L~~~Gikgvi~-DlDNT------Lv~wd~~~~tpe~~~W~~e~k~~gi~v~vv--SNn~e~RV~~~~~~l~-v~fi~ 89 (175)
T COG2179 20 PDILKAHGIKGVIL-DLDNT------LVPWDNPDATPELRAWLAELKEAGIKVVVV--SNNKESRVARAAEKLG-VPFIY 89 (175)
T ss_pred HHHHHHcCCcEEEE-eccCc------eecccCCCCCHHHHHHHHHHHhcCCEEEEE--eCCCHHHHHhhhhhcC-Cceee
Confidence 45677788888775 21110 057788889999999997742112223444 5688889999999998 78654
Q ss_pred EEEEeC-------------CCCcEEE-----E--EeccCCCCCEEEEEeCcccchHHHHHHHH
Q 026473 171 VDKRRH-------------GHNVAEV-----M--NLIGDVKGKVAVMVDDMIDTAGTIAKGAA 213 (238)
Q Consensus 171 ~~k~r~-------------~~~~~~~-----~--~~~~~v~gk~vlIVDDii~TG~Tl~~a~~ 213 (238)
-.+.-. ...+.-. + .+-|+-.|-++|+|..+..+.+-.....+
T Consensus 90 ~A~KP~~~~fr~Al~~m~l~~~~vvmVGDqL~TDVlggnr~G~~tIlV~Pl~~~d~~~t~~nR 152 (175)
T COG2179 90 RAKKPFGRAFRRALKEMNLPPEEVVMVGDQLFTDVLGGNRAGMRTILVEPLVAPDGWITKINR 152 (175)
T ss_pred cccCccHHHHHHHHHHcCCChhHEEEEcchhhhhhhcccccCcEEEEEEEeccccchhhhhhH
Confidence 332211 0011111 0 12335678899999999999985444443
No 102
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=85.06 E-value=6.8 Score=33.58 Aligned_cols=99 Identities=12% Similarity=0.159 Sum_probs=58.3
Q ss_pred HHHHHHHhcCCCeEEEEecccCccccccccCCCCchhHHHHHHHHHHhCCCEEEEEecCChhccCccCccCccccccHHH
Q 026473 50 IMIDACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVI 129 (238)
Q Consensus 50 ~~~~a~~~~~a~~i~~viPY~~YsRqdr~~~~~~~~~~~~~a~ll~~~g~~~vi~vdlHs~~~~~~f~~~~~~l~~~~~l 129 (238)
-+++||+..|++||-++-||.+.-- ..+.++|+..|++-+-..- -.... +..+-.+. ...+
T Consensus 110 A~~~AL~alg~~RIalvTPY~~~v~-------------~~~~~~l~~~G~eV~~~~~---~~~~~--~~~ia~i~-p~~i 170 (239)
T TIGR02990 110 AAVDGLAALGVRRISLLTPYTPETS-------------RPMAQYFAVRGFEIVNFTC---LGLTD--DREMARIS-PDCI 170 (239)
T ss_pred HHHHHHHHcCCCEEEEECCCcHHHH-------------HHHHHHHHhCCcEEeeeec---cCCCC--CceeeecC-HHHH
Confidence 4678999999999999999975432 3678888888865333211 01110 00111222 2233
Q ss_pred HHHHHhcc-CCCCCeEEEEeCCCchHHHHHHHHHcCCCCE
Q 026473 130 LDYLASKT-VSSNDLVVVSPDVGGVARARAFAKKLSDAPL 168 (238)
Q Consensus 130 a~~i~~~~-~~~~~~viv~pd~g~~~~a~~~a~~l~~~~~ 168 (238)
.+.+.+.. .+.+-.++.+..-..+.....+-+.+| .|+
T Consensus 171 ~~~~~~~~~~~aDAifisCTnLrt~~vi~~lE~~lG-kPV 209 (239)
T TIGR02990 171 VEAALAAFDPDADALFLSCTALRAATCAQRIEQAIG-KPV 209 (239)
T ss_pred HHHHHHhcCCCCCEEEEeCCCchhHHHHHHHHHHHC-CCE
Confidence 33443321 122234566667778888888888898 785
No 103
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=80.18 E-value=5.1 Score=30.90 Aligned_cols=36 Identities=33% Similarity=0.480 Sum_probs=32.3
Q ss_pred cCCCCCEEEEEeCcccchHHHHHHHHHHHHCCCCEEEEEE
Q 026473 188 GDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACC 227 (238)
Q Consensus 188 ~~v~gk~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~ 227 (238)
++++|++++|+ -+|++-..++..|.+.|+++|+++.
T Consensus 8 ~~l~~~~vlvi----GaGg~ar~v~~~L~~~g~~~i~i~n 43 (135)
T PF01488_consen 8 GDLKGKRVLVI----GAGGAARAVAAALAALGAKEITIVN 43 (135)
T ss_dssp STGTTSEEEEE----SSSHHHHHHHHHHHHTTSSEEEEEE
T ss_pred CCcCCCEEEEE----CCHHHHHHHHHHHHHcCCCEEEEEE
Confidence 57899999986 5799999999999999999998874
No 104
>PLN02501 digalactosyldiacylglycerol synthase
Probab=78.04 E-value=16 Score=36.44 Aligned_cols=130 Identities=12% Similarity=0.193 Sum_probs=72.3
Q ss_pred CCcEEEEecCCCC--CchhHHHHHHHHHHHHhcCCCeEEEEecccCccccccccCCCCchh-----HHHHHHHH-HHhCC
Q 026473 28 GCDVYLVQPTCPP--ANENLMELLIMIDACRRASAKNITAVIPYFGYARADRKTQGRESIA-----AKLVANLI-TEAGA 99 (238)
Q Consensus 28 g~~v~ivqs~~~~--~~~~l~ell~~~~a~~~~~a~~i~~viPY~~YsRqdr~~~~~~~~~-----~~~~a~ll-~~~g~ 99 (238)
+++|.||.+-+-| .-..+.-|+..+.-.+. |-.+||+|+|+++-+-|...+...-.+. -..+-++| +.+|+
T Consensus 322 ~r~~~ivTtAslPWmTGtavnpL~rAayLa~~-~~~~VtlviPWl~~~dq~~vy~~~~~F~~p~eQe~~ir~wl~~r~g~ 400 (794)
T PLN02501 322 KRHVAIVTTASLPWMTGTAVNPLFRAAYLAKS-AKQNVTLLVPWLCKSDQELVYPNNLTFSSPEEQESYIRNWLEERIGF 400 (794)
T ss_pred CCeEEEEEcccCcccccccccHHHHHHHhccc-CCceEEEEEecCCccccccccCCCcccCCHHHHHHHHHHHHHHhcCC
Confidence 5789999885544 12233345555555543 5689999999999776655443221221 13577888 55676
Q ss_pred CEEEEEecCChhccCccCccCccccccHHHHHHHHhccCCCCCeEEEEeCCCchH-HHHHHHHHcC
Q 026473 100 DRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLASKTVSSNDLVVVSPDVGGVA-RARAFAKKLS 164 (238)
Q Consensus 100 ~~vi~vdlHs~~~~~~f~~~~~~l~~~~~la~~i~~~~~~~~~~viv~pd~g~~~-~a~~~a~~l~ 164 (238)
..-..+...- +-|......|.+...+.+.|... +.+-..+..|..=|.. -+...|++++
T Consensus 401 ~~~~~i~fYp----g~~~~~~~SI~p~gdI~~~L~~f--~PDVVHLatP~~LGw~~~Glr~ArKl~ 460 (794)
T PLN02501 401 KADFKISFYP----GKFSKERRSIIPAGDTSQFIPSK--DADIAILEEPEHLNWYHHGKRWTDKFN 460 (794)
T ss_pred CCCceEEeec----chhccCCccccchHHHHHHhhcc--CCCEEEECCchhhccHHHHHHHHHHcC
Confidence 5322222111 22333345566677777777753 2222334445433333 2556677776
No 105
>TIGR01091 upp uracil phosphoribosyltransferase. that includes uracil phosphoribosyltransferase, uridine kinases, and other, uncharacterized proteins.
Probab=73.94 E-value=8.1 Score=32.23 Aligned_cols=47 Identities=19% Similarity=0.365 Sum_probs=37.2
Q ss_pred eEEEecCCcCCCcEEEEecCCCCCchhHHHHHHHHHHHHhcCCCeEEEEec
Q 026473 18 IYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVIP 68 (238)
Q Consensus 18 ~~v~i~~~v~g~~v~ivqs~~~~~~~~l~ell~~~~a~~~~~a~~i~~viP 68 (238)
.+.++++++.|++|+++..+...-+ -+..+++.|++.|+++|.++..
T Consensus 112 ~~~~lp~~i~~~~VllvDd~laTG~----Tl~~ai~~L~~~G~~~I~v~~l 158 (207)
T TIGR01091 112 YYSKLPEDIDERTVIVLDPMLATGG----TMIAALDLLKKRGAKKIKVLSI 158 (207)
T ss_pred EEecCCCCCCCCEEEEECCCccchH----HHHHHHHHHHHcCCCEEEEEEE
Confidence 4677888999999999988754322 2667888999999999987776
No 106
>COG0634 Hpt Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=72.69 E-value=22 Score=29.06 Aligned_cols=61 Identities=20% Similarity=0.356 Sum_probs=40.8
Q ss_pred CceeeeeeeeeCC-----CceEEEe--cCCcCCCcEEEEecCCCCCchhHHHHHHHHHHHHhcCCCeEEEEe
Q 026473 3 VELGKINIKRFAD-----GEIYVQL--QESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVI 67 (238)
Q Consensus 3 ~~~~~~~~~~F~d-----GE~~v~i--~~~v~g~~v~ivqs~~~~~~~~l~ell~~~~a~~~~~a~~i~~vi 67 (238)
.++..+.++.|-+ |+.++.- .++++|+||.+|...-..- . -|-.+.+-|+..||+++..+.
T Consensus 61 ~e~dFm~vSSYg~~t~ssg~v~i~kDld~di~grdVLiVeDIiDsG--~--TLs~i~~~l~~r~a~sv~i~t 128 (178)
T COG0634 61 LEVDFMHVSSYGGGTSSSGEVKILKDLDEDIKGRDVLIVEDIIDSG--L--TLSKVRDLLKERGAKSVRIAT 128 (178)
T ss_pred ceeEEEEEeccCCCcccCCceEEecccccCCCCCeEEEEecccccC--h--hHHHHHHHHHhCCCCeEEEEE
Confidence 3445566666655 4566653 5889999999998764321 1 245566777788999988654
No 107
>PRK00129 upp uracil phosphoribosyltransferase; Reviewed
Probab=70.00 E-value=12 Score=31.13 Aligned_cols=47 Identities=28% Similarity=0.418 Sum_probs=36.2
Q ss_pred eEEEecCCcCCCcEEEEecCCCCCchhHHHHHHHHHHHHhcCCCeEEEEec
Q 026473 18 IYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVIP 68 (238)
Q Consensus 18 ~~v~i~~~v~g~~v~ivqs~~~~~~~~l~ell~~~~a~~~~~a~~i~~viP 68 (238)
.+.+++.++.|++|+++..+...-+ -+...++.|+..|+++|.++.-
T Consensus 114 ~~~~lp~~i~~~~VllvDd~laTG~----Tl~~ai~~L~~~G~~~I~~~~l 160 (209)
T PRK00129 114 YYVKLPEDIDERTVIVVDPMLATGG----SAIAAIDLLKKRGAKNIKVLCL 160 (209)
T ss_pred EEeeCCCcCCCCEEEEECCcccchH----HHHHHHHHHHHcCCCEEEEEEE
Confidence 3667888999999999987754322 2566778888999999987765
No 108
>PRK09162 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=67.78 E-value=20 Score=29.19 Aligned_cols=42 Identities=21% Similarity=0.318 Sum_probs=31.1
Q ss_pred CCcCCCcEEEEecCCCCCchhHHHHHHHHHHHHhcCCCeEEEEecc
Q 026473 24 ESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVIPY 69 (238)
Q Consensus 24 ~~v~g~~v~ivqs~~~~~~~~l~ell~~~~a~~~~~a~~i~~viPY 69 (238)
.+++|++|+||...... -.. |...++.|++.||++|.+...+
T Consensus 93 ~~v~gk~VLIVDDIidT--G~T--l~~~~~~Lk~~Ga~~V~~avL~ 134 (181)
T PRK09162 93 ESLKGRTVLVVDDILDE--GHT--LAAIRDRCLEMGAAEVYSAVLV 134 (181)
T ss_pred CCCCCCEEEEEccccCc--HHH--HHHHHHHHHhCCCCEEEEEEEE
Confidence 57899999999876532 233 4466778999999999877643
No 109
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=67.30 E-value=12 Score=25.76 Aligned_cols=34 Identities=32% Similarity=0.310 Sum_probs=28.2
Q ss_pred CCCCEEEEEeCcccchHHHHHHHHHHHHCCCCEEEEE
Q 026473 190 VKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYAC 226 (238)
Q Consensus 190 v~gk~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~ 226 (238)
-+++.+++++ .+|.....++..|++.|-+.|+++
T Consensus 54 ~~~~~iv~~c---~~g~~a~~~~~~l~~~G~~~v~~l 87 (100)
T smart00450 54 DKDKPVVVYC---RSGNRSAKAAWLLRELGFKNVYLL 87 (100)
T ss_pred CCCCeEEEEe---CCCcHHHHHHHHHHHcCCCceEEe
Confidence 3678999998 578888999999999999886643
No 110
>PRK09123 amidophosphoribosyltransferase; Provisional
Probab=66.50 E-value=23 Score=33.56 Aligned_cols=73 Identities=21% Similarity=0.188 Sum_probs=43.7
Q ss_pred CcCCCcEEEEecCCCCCchhHHHHHHHHHHHHhcCCCeEEEEe-----cccCccc---cccccCCCCchhHHHHHHHHHH
Q 026473 25 SVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVI-----PYFGYAR---ADRKTQGRESIAAKLVANLITE 96 (238)
Q Consensus 25 ~v~g~~v~ivqs~~~~~~~~l~ell~~~~a~~~~~a~~i~~vi-----PY~~YsR---qdr~~~~~~~~~~~~~a~ll~~ 96 (238)
.++|++|++|...... -.. +.-+++.||++||++|.+.+ -|-.|.. .++...-..-.+...+++.|
T Consensus 357 ~~~gk~vvlvDD~i~t--G~T--l~~~~~~l~~~Ga~~v~~~~~~p~~~~~~~~gid~~~~~~l~~~~~~~~ei~~~i-- 430 (479)
T PRK09123 357 VIEGKRVVLVDDSIVR--GTT--SRKIVQMLRDAGAKEVHLRIASPPITHPCFYGIDTPERSKLLAATHSLEEMAEYI-- 430 (479)
T ss_pred ccCCCEEEEEeceeCc--hHH--HHHHHHHHHHcCCCEEEEEEcCCCCccceeecCCCCCHHHHHHcCCCHHHHHHHh--
Confidence 4789999999775322 222 44688999999999999888 3444444 22221111113444555544
Q ss_pred hCCCEEEE
Q 026473 97 AGADRVLA 104 (238)
Q Consensus 97 ~g~~~vi~ 104 (238)
|+|.+.-
T Consensus 431 -gadsl~y 437 (479)
T PRK09123 431 -GADSLAF 437 (479)
T ss_pred -CCCeEec
Confidence 6666653
No 111
>PRK15423 hypoxanthine phosphoribosyltransferase; Provisional
Probab=66.47 E-value=48 Score=27.00 Aligned_cols=61 Identities=13% Similarity=0.230 Sum_probs=41.7
Q ss_pred eeeeeeeeeC-----CCceEEEe--cCCcCCCcEEEEecCCCCCchhHHHHHHHHHHHHhcCCCeEEEEecc
Q 026473 5 LGKINIKRFA-----DGEIYVQL--QESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVIPY 69 (238)
Q Consensus 5 ~~~~~~~~F~-----dGE~~v~i--~~~v~g~~v~ivqs~~~~~~~~l~ell~~~~a~~~~~a~~i~~viPY 69 (238)
+..+..+.|- +|+..+.. +.+++|++|+||...... -..|. .+.+.++..|++++..+.-+
T Consensus 62 v~~l~~ssY~~~~~~~~~v~i~~~~~~~v~gk~VLlVDDIiDT--G~TL~--~l~~~l~~~~~~~v~~avL~ 129 (178)
T PRK15423 62 VDFMTASSYGSGMSTTRDVKILKDLDEDIRGKDVLIVEDIIDS--GNTLS--KVREILSLREPKSLAICTLL 129 (178)
T ss_pred eeEEEEEEecCCCcccCceEEecCCCCCCCCCEEEEEeeecCc--hHHHH--HHHHHHHhCCCCEEEEEEEE
Confidence 4567778886 35555553 357899999999887543 23333 66677888899988655544
No 112
>TIGR01203 HGPRTase hypoxanthine phosphoribosyltransferase. Sequence differences as small as a single residue can affect whether members of this family act on hypoxanthine and guanine or hypoxanthine only. The designation of this model as equivalog reflects hypoxanthine specificity and does not reflect whether or not guanine can replace hypoxanthine.
Probab=64.94 E-value=33 Score=27.45 Aligned_cols=61 Identities=18% Similarity=0.384 Sum_probs=38.7
Q ss_pred eeeeeeeeeCCC-----ceEE--EecCCcCCCcEEEEecCCCCCchhHHHHHHHHHHHHhcCCCeEEEEecc
Q 026473 5 LGKINIKRFADG-----EIYV--QLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVIPY 69 (238)
Q Consensus 5 ~~~~~~~~F~dG-----E~~v--~i~~~v~g~~v~ivqs~~~~~~~~l~ell~~~~a~~~~~a~~i~~viPY 69 (238)
+..+.++.|.++ +..+ .+..++.|++|+||......- .. +.-.+++|+..|+++|..+.-+
T Consensus 54 v~~i~~~~Y~~~~~~~~~~~~~~~~~~~~~gk~vlivDDii~TG-~T---l~~~~~~l~~~g~~~i~~~~l~ 121 (166)
T TIGR01203 54 VDFMAVSSYGNGMQSSGDVKILKDLDLSIKGKDVLIVEDIVDTG-LT---LQYLLDLLKARKPKSLKIVTLL 121 (166)
T ss_pred eeEEEEeeccCCCcccCceEEecCCCCCCCCCEEEEEeeeeCcH-HH---HHHHHHHHHHCCCCEEEEEEEE
Confidence 444555655533 2332 245678899999998875432 22 4456677888899998866644
No 113
>PF06300 Tsp45I: Tsp45I type II restriction enzyme; InterPro: IPR010443 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry represents type II restriction endonucleases such as Tsp45I, which recognises the DNA sequence 5' GTSAC, cleaving prior to G-1 [].
Probab=64.67 E-value=1 Score=38.26 Aligned_cols=60 Identities=15% Similarity=0.276 Sum_probs=44.2
Q ss_pred ecccCccccccccCCCCchhHHHHHHHHHHhCCCEEEEEecCChhccCccCc-cCccccccHHHHHHHHhc
Q 026473 67 IPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDI-PVDHVYCQPVILDYLASK 136 (238)
Q Consensus 67 iPY~~YsRqdr~~~~~~~~~~~~~a~ll~~~g~~~vi~vdlHs~~~~~~f~~-~~~~l~~~~~la~~i~~~ 136 (238)
=||.||-+.|+....+.|-+.+-+|..|.++|.+.|+- .. .. +..|-.-.|++-+|+.+.
T Consensus 70 dsYvayLkrdksAlernP~Ti~ri~g~l~emGl~~i~e---------k~-t~PkEtNRQIGPlFk~W~~~~ 130 (261)
T PF06300_consen 70 DSYVAYLKRDKSALERNPETINRICGRLYEMGLDKIYE---------KC-TEPKETNRQIGPLFKNWINSG 130 (261)
T ss_pred cchHHHHHhhHHHHhcCcHHHHHHHHHHHHHhHHHHHH---------Hc-CCCchhcchhhHHHHHHHhcc
Confidence 47999999999988999999999999999999887762 11 11 223444456777777654
No 114
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=64.05 E-value=16 Score=24.81 Aligned_cols=34 Identities=29% Similarity=0.333 Sum_probs=28.4
Q ss_pred CCCCEEEEEeCcccchHHHHHHHHHHHHCCCCEEEEE
Q 026473 190 VKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYAC 226 (238)
Q Consensus 190 v~gk~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~ 226 (238)
-+++.|+++++- |.....++..|++.|-..++++
T Consensus 48 ~~~~~vv~~c~~---~~~a~~~~~~l~~~G~~~v~~l 81 (89)
T cd00158 48 DKDKPIVVYCRS---GNRSARAAKLLRKAGGTNVYNL 81 (89)
T ss_pred CCCCeEEEEeCC---CchHHHHHHHHHHhCcccEEEe
Confidence 467899998875 7888999999999998888754
No 115
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=63.92 E-value=15 Score=26.04 Aligned_cols=33 Identities=18% Similarity=0.035 Sum_probs=26.8
Q ss_pred CCCEEEEEeCcccchHHHHHHHHHHHHCCCCEEEEE
Q 026473 191 KGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYAC 226 (238)
Q Consensus 191 ~gk~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~ 226 (238)
++++++++++ +|.+...++..|++.|-..|+.+
T Consensus 55 ~~~~ivv~c~---~g~~s~~~~~~l~~~G~~~v~~l 87 (96)
T cd01529 55 RATRYVLTCD---GSLLARFAAQELLALGGKPVALL 87 (96)
T ss_pred CCCCEEEEeC---ChHHHHHHHHHHHHcCCCCEEEe
Confidence 5678999864 78888889999999999877543
No 116
>PLN02440 amidophosphoribosyltransferase
Probab=62.97 E-value=29 Score=32.87 Aligned_cols=76 Identities=17% Similarity=0.238 Sum_probs=45.9
Q ss_pred CCcCCCcEEEEecCCCCCchhHHHHHHHHHHHHhcCCCeEEEEecc--------cCccccccccCCCCchhHHHHHHHHH
Q 026473 24 ESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVIPY--------FGYARADRKTQGRESIAAKLVANLIT 95 (238)
Q Consensus 24 ~~v~g~~v~ivqs~~~~~~~~l~ell~~~~a~~~~~a~~i~~viPY--------~~YsRqdr~~~~~~~~~~~~~a~ll~ 95 (238)
..++|++|+||...-- .-.. |--+++.|+++||++|.+++.- ++..=.||.+.-+.-++...+++.|
T Consensus 336 ~~v~gk~VlLVDDiit--tGtT--l~~i~~~L~~aGa~~V~v~v~~p~~~~p~~~G~d~p~~~~li~~~~~~~ei~~~~- 410 (479)
T PLN02440 336 SVLEGKRVVVVDDSIV--RGTT--SSKIVRMLREAGAKEVHMRIASPPIIASCYYGVDTPSREELISNRMSVEEIRKFI- 410 (479)
T ss_pred ccccCceEEEEeceeC--cHHH--HHHHHHHHHhcCCCEEEEEEECCcccccceeeccCCCHHHHhhcCCCHHHHHHHh-
Confidence 4589999999976532 2223 4447789999999998866542 2223334444333334445555554
Q ss_pred HhCCCEEEEEe
Q 026473 96 EAGADRVLACD 106 (238)
Q Consensus 96 ~~g~~~vi~vd 106 (238)
|+|.+.-+.
T Consensus 411 --~~dsl~~l~ 419 (479)
T PLN02440 411 --GCDSLAFLP 419 (479)
T ss_pred --CCCEEEEec
Confidence 677776543
No 117
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=61.85 E-value=15 Score=25.77 Aligned_cols=31 Identities=19% Similarity=0.187 Sum_probs=27.2
Q ss_pred CCCEEEEEeCcccchHHHHHHHHHHHHCCCCEEE
Q 026473 191 KGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVY 224 (238)
Q Consensus 191 ~gk~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~ 224 (238)
+++.++++.. +|.+...++..|++.|-..|+
T Consensus 55 ~~~~ivv~c~---~g~~s~~a~~~l~~~G~~~v~ 85 (96)
T cd01444 55 RDRPVVVYCY---HGNSSAQLAQALREAGFTDVR 85 (96)
T ss_pred CCCCEEEEeC---CCChHHHHHHHHHHcCCceEE
Confidence 5778888877 899999999999999998876
No 118
>PRK07272 amidophosphoribosyltransferase; Provisional
Probab=61.61 E-value=32 Score=32.73 Aligned_cols=78 Identities=17% Similarity=0.274 Sum_probs=46.1
Q ss_pred cCCcCCCcEEEEecCCCCCchhHHHHHHHHHHHHhcCCCeEEEEec--------ccCccccccccCCCCchhHHHHHHHH
Q 026473 23 QESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVIP--------YFGYARADRKTQGRESIAAKLVANLI 94 (238)
Q Consensus 23 ~~~v~g~~v~ivqs~~~~~~~~l~ell~~~~a~~~~~a~~i~~viP--------Y~~YsRqdr~~~~~~~~~~~~~a~ll 94 (238)
...++|++|++|...-- .-.. +--++.+||++||+.|.+.+. |++..++.|...-..-.+...+++.
T Consensus 345 ~~~~~gk~vllVDDvit--tG~T--~~~~~~~L~~~Ga~~v~~~~~~p~~~~~c~ygid~~~~~~lia~~~~~~ei~~~- 419 (484)
T PRK07272 345 SGVVKGKRVVMVDDSIV--RGTT--SRRIVQLLKEAGAKEVHVAIASPELKYPCFYGIDIQTRRELISANHSVEEICDI- 419 (484)
T ss_pred ccccCCCEEEEEccccC--chHH--HHHHHHHHHhcCCcEEEEEEeCCccccChhhhccCcCHHHHHhcCCCHHHHHHH-
Confidence 35678999999876421 2233 335788999999999998877 5555555443211111233344443
Q ss_pred HHhCCCEEEEEec
Q 026473 95 TEAGADRVLACDL 107 (238)
Q Consensus 95 ~~~g~~~vi~vdl 107 (238)
.|+|.+..+.+
T Consensus 420 --~~~dsl~~~~~ 430 (484)
T PRK07272 420 --IGADSLTYLSV 430 (484)
T ss_pred --hCCCEEEEecH
Confidence 46666665443
No 119
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=61.25 E-value=99 Score=26.26 Aligned_cols=98 Identities=8% Similarity=0.202 Sum_probs=57.2
Q ss_pred HHHHHHHhcCCCeEEEEecccCccccccccCCCCchhHHHHHHHHHHhCCCEEEEEecCChhccCccCccCcccc--ccH
Q 026473 50 IMIDACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVY--CQP 127 (238)
Q Consensus 50 ~~~~a~~~~~a~~i~~viPY~~YsRqdr~~~~~~~~~~~~~a~ll~~~g~~~vi~vdlHs~~~~~~f~~~~~~l~--~~~ 127 (238)
-.+++|+..|++||.+.-||.---- +...++|+.-|++ .+|.-+-.+.+ |..+-.+. ...
T Consensus 108 Avv~aL~al~a~ri~vlTPY~~evn-------------~~e~ef~~~~Gfe---iv~~~~Lgi~d--n~eigr~~P~~~y 169 (238)
T COG3473 108 AVVEALNALGAQRISVLTPYIDEVN-------------QREIEFLEANGFE---IVDFKGLGITD--NLEIGRQEPWAVY 169 (238)
T ss_pred HHHHHHHhhCcceEEEeccchhhhh-------------hHHHHHHHhCCeE---EEEeeccCCcc--cchhcccChHHHH
Confidence 4678999999999999999974322 3577888887753 22322222221 11122222 123
Q ss_pred HHHHHHHhccCCCCCeEEEEeCCCchHHHHHHHHHcCCCCE
Q 026473 128 VILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPL 168 (238)
Q Consensus 128 ~la~~i~~~~~~~~~~viv~pd~g~~~~a~~~a~~l~~~~~ 168 (238)
.+|+.+..- +.+-..|=|..-.++.....+-+.+| .|.
T Consensus 170 ~lAk~~~~~--~~DaiFiSCTnlRt~eii~~lE~~~G-~PV 207 (238)
T COG3473 170 RLAKEVFTP--DADAIFISCTNLRTFEIIEKLERDTG-VPV 207 (238)
T ss_pred HHHHHhcCC--CCCeEEEEeeccccHHHHHHHHHHhC-Cce
Confidence 344444321 22333444567777888888888888 775
No 120
>PTZ00271 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=60.82 E-value=43 Score=28.18 Aligned_cols=61 Identities=11% Similarity=0.250 Sum_probs=41.4
Q ss_pred ceeeeeeeeeCCC-----ceEEE--ecCCcCCCcEEEEecCCCCCchhHHHHHHHHHHHHhcCCCeEEEEec
Q 026473 4 ELGKINIKRFADG-----EIYVQ--LQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVIP 68 (238)
Q Consensus 4 ~~~~~~~~~F~dG-----E~~v~--i~~~v~g~~v~ivqs~~~~~~~~l~ell~~~~a~~~~~a~~i~~viP 68 (238)
++..+.+..|-+| ++.+. +..+++|++|+||...-.. =.-|..+.+.|+..+++++..+.-
T Consensus 87 ~vdfi~vssY~~~~~s~g~~~i~~~~~~~i~gk~VLIVDDIvDT----G~TL~~v~~~l~~~~p~svk~avL 154 (211)
T PTZ00271 87 KVEFICASSYGTGVETSGQVRMLLDVRDSVENRHILIVEDIVDS----AITLQYLMRFMLAKKPASLKTVVL 154 (211)
T ss_pred eEEEEEEEecCCCCcccCceEEecCCCCCCCCCEEEEEecccCC----HHHHHHHHHHHHhcCCCEEEEEEE
Confidence 4667777888654 34443 3468999999999876432 123566777888889999865553
No 121
>PLN02238 hypoxanthine phosphoribosyltransferase
Probab=58.95 E-value=50 Score=27.09 Aligned_cols=60 Identities=17% Similarity=0.164 Sum_probs=40.9
Q ss_pred eeeeeeeeCC-----CceEEEe---cCCcCCCcEEEEecCCCCCchhHHHHHHHHHHHHhcCCCeEEEEecc
Q 026473 6 GKINIKRFAD-----GEIYVQL---QESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVIPY 69 (238)
Q Consensus 6 ~~~~~~~F~d-----GE~~v~i---~~~v~g~~v~ivqs~~~~~~~~l~ell~~~~a~~~~~a~~i~~viPY 69 (238)
..+..+++.+ |+..+.. ..+++|++|+||...... =--+..+++.++..|++++.++.-+
T Consensus 67 ~fi~~~sy~~~~~~~g~~~i~~~~~~~~v~gk~VliVDDIidT----G~Tl~~~~~~l~~~g~~~v~~avL~ 134 (189)
T PLN02238 67 DFIRASSYGGGTESSGVAKVSGADLKIDVKGKHVLLVEDIVDT----GNTLSALVAHLEAKGAASVSVCALL 134 (189)
T ss_pred EEEEeeecCCCccccCceeEecCCCCCCCCCCEEEEEecccch----HHHHHHHHHHHHhCCCCEEEEEEEE
Confidence 3455666754 4555554 357899999999876432 2235566788999999999877543
No 122
>KOG0814 consensus Glyoxylase [General function prediction only]
Probab=58.78 E-value=9.6 Score=31.38 Aligned_cols=44 Identities=34% Similarity=0.561 Sum_probs=37.5
Q ss_pred EEeccCCCCCEEEEEeCcccchHHHHHHHHHHHHCCCCEEEEEEEcc
Q 026473 184 MNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHA 230 (238)
Q Consensus 184 ~~~~~~v~gk~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~ 230 (238)
.-+.++.+.+..+|||.+..| ..+-++++++.|-+-+|++-||-
T Consensus 23 tYll~d~~~~~AviIDPV~et---~~RD~qlikdLgl~LiYa~NTH~ 66 (237)
T KOG0814|consen 23 TYLLGDHKTGKAVIIDPVLET---VSRDAQLIKDLGLDLIYALNTHV 66 (237)
T ss_pred EEEeeeCCCCceEEecchhhc---ccchHHHHHhcCceeeeeeccee
Confidence 346688999999999999975 56778889999999999999984
No 123
>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents prokaryotic-type FAD synthetase, which occurs primarily as part of a bifunctional enzyme.; GO: 0003919 FMN adenylyltransferase activity, 0009231 riboflavin biosynthetic process; PDB: 2X0K_B 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A 1MRZ_A.
Probab=58.18 E-value=18 Score=28.82 Aligned_cols=77 Identities=19% Similarity=0.240 Sum_probs=43.8
Q ss_pred chhHHHHHHHHHHhCCCEEEEEecCChhccCccCccCccccccHHHHHHHHhccCCCCCeEEEEeC-------CCchHHH
Q 026473 84 SIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLASKTVSSNDLVVVSPD-------VGGVARA 156 (238)
Q Consensus 84 ~~~~~~~a~ll~~~g~~~vi~vdlHs~~~~~~f~~~~~~l~~~~~la~~i~~~~~~~~~~viv~pd-------~g~~~~a 156 (238)
-.+.+.-.++|+.+|+|.++.+| |+....++++..-+-..|.+.. .-.-++|+.| .|.....
T Consensus 61 l~s~~ek~~~l~~~Gvd~~~~~~---------F~~~~~~ls~~~Fi~~iL~~~l--~~~~ivvG~DfrFG~~~~G~~~~L 129 (157)
T PF06574_consen 61 LTSLEEKLELLESLGVDYVIVIP---------FTEEFANLSPEDFIEKILKEKL--NVKHIVVGEDFRFGKNRSGDVELL 129 (157)
T ss_dssp SS-HHHHHHHHHHTTESEEEEE----------CCCHHCCS-HHHHHHHHCCCHC--TEEEEEEETT-EESGGGEEEHHHH
T ss_pred CCCHHHHHHHHHHcCCCEEEEec---------chHHHHcCCHHHHHHHHHHhcC--CccEEEEccCccCCCCCCCCHHHH
Confidence 45777889999999999999987 4433345554333333344232 1234777777 5666666
Q ss_pred HHHHHHcCCCCEEEEE
Q 026473 157 RAFAKKLSDAPLAIVD 172 (238)
Q Consensus 157 ~~~a~~l~~~~~~~~~ 172 (238)
+.+++..| ..+..+.
T Consensus 130 ~~~~~~~g-~~v~~v~ 144 (157)
T PF06574_consen 130 KELGKEYG-FEVEVVP 144 (157)
T ss_dssp HHCTTTT--SEEEEE-
T ss_pred HHhcccCc-eEEEEEC
Confidence 66665555 4444443
No 124
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=56.97 E-value=20 Score=25.48 Aligned_cols=28 Identities=18% Similarity=0.228 Sum_probs=23.8
Q ss_pred CCCEEEEEeCcccchHHHHHHHHHHHHCCCC
Q 026473 191 KGKVAVMVDDMIDTAGTIAKGAALLHQEGAR 221 (238)
Q Consensus 191 ~gk~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~ 221 (238)
+++.++++ |.+|..-..+++.|++.|-.
T Consensus 60 ~~~~ivv~---C~~G~rs~~aa~~L~~~G~~ 87 (100)
T cd01523 60 DDQEVTVI---CAKEGSSQFVAELLAERGYD 87 (100)
T ss_pred CCCeEEEE---cCCCCcHHHHHHHHHHcCce
Confidence 56677775 78999999999999999987
No 125
>PF00156 Pribosyltran: Phosphoribosyl transferase domain; InterPro: IPR000836 The name PRT comes from phosphoribosyltransferase (PRTase) enzymes, which carry out phosphoryl transfer reactions on 5-phosphoribosyl-alpha1-pyrophosphate PRPP, an activated form of ribose-5-phosphate. Members of Phosphoribosyltransferase (PRT) are catalytic and are regulatory proteins involved in nucleotide synthesis and salvage []. This includes a range of diverse phosphoribosyl transferase enzymes including adenine phosphoribosyltransferase (2.4.2.7 from EC); hypoxanthine-guanine-xanthine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase (2.4.2.8 from EC); ribose-phosphate pyrophosphokinase (2.7.6.1 from EC); amidophosphoribosyltransferase (2.4.2.14 from EC); orotate phosphoribosyltransferase (2.4.2.10 from EC);uracil phosphoribosyltransferase (2.4.2.9 from EC); and xanthine-guanine phosphoribosyltransferase (2.4.2.22 from EC). Not all PRT proteins are enzymes. For example, in some bacteria PRT proteins regulate the expression of purine and pyrimidine synthetic genes. Members of PRT are defined by the protein fold and by a short 13-residue sequence motif, The motif consists of four hydrophobic amino acids, two acidic amino acids and seven amino acids of variable character, usually including glycine and threonine. The motif has been predicted to be a PRPP-binding site in advance of structural information [, ]. Apart of this motif, different PRT proteins have a low level of sequence identity, less than 15%. The PRT sequence motif is only found in PRTases from the nucleotide synthesis and salvage pathways. Other PRTases, from the tryptophan, histidine and nicotinamide synthetic and salvage pathways, lack the PRT sequence motif and appear to be unrelated to each other and unrelated to the PRT family.; GO: 0009116 nucleoside metabolic process; PDB: 2JBH_A 1Y0B_D 2FXV_B 1GPH_1 1AO0_D 1ORO_B 1VCH_C 2WNS_A 2PRZ_B 2PS1_A ....
Probab=56.42 E-value=35 Score=25.09 Aligned_cols=45 Identities=20% Similarity=0.271 Sum_probs=32.8
Q ss_pred EEecCCcCCCcEEEEecCCCCCchhHHHHHHHHHHHHhcCCCeEEEEec
Q 026473 20 VQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVIP 68 (238)
Q Consensus 20 v~i~~~v~g~~v~ivqs~~~~~~~~l~ell~~~~a~~~~~a~~i~~viP 68 (238)
....+.++|++|+||......-+ . +..+++.+++.|++.+.++.+
T Consensus 80 ~~~~~~~~gk~vliVDDvi~tG~-T---l~~~~~~L~~~g~~~v~~~vl 124 (125)
T PF00156_consen 80 IIDKEDIKGKRVLIVDDVIDTGG-T---LKEAIELLKEAGAKVVGVAVL 124 (125)
T ss_dssp EEESSSGTTSEEEEEEEEESSSH-H---HHHHHHHHHHTTBSEEEEEEE
T ss_pred ecccccccceeEEEEeeeEcccH-H---HHHHHHHHHhCCCcEEEEEEE
Confidence 34457889999999987654322 2 556778899999999887654
No 126
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=55.75 E-value=26 Score=30.60 Aligned_cols=35 Identities=14% Similarity=0.210 Sum_probs=30.6
Q ss_pred CCCCCEEEEEeCcccchHHHHHHHHHHHHCCCCEEEEEE
Q 026473 189 DVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACC 227 (238)
Q Consensus 189 ~v~gk~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~ 227 (238)
+++||+|+|+ -+|++-..++..|.+.|+++|.++.
T Consensus 122 ~~~~k~vlvl----GaGGaarai~~aL~~~G~~~i~I~n 156 (282)
T TIGR01809 122 PLAGFRGLVI----GAGGTSRAAVYALASLGVTDITVIN 156 (282)
T ss_pred ccCCceEEEE----cCcHHHHHHHHHHHHcCCCeEEEEe
Confidence 4678999865 7899999999999999999998875
No 127
>PRK05205 bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase; Provisional
Probab=55.67 E-value=51 Score=26.52 Aligned_cols=62 Identities=15% Similarity=0.197 Sum_probs=38.6
Q ss_pred ceeeeeeeeeCCCc-----e-E---EEecCCcCCCcEEEEecCCCCCchhHHHHHHHHHHHHhcC-CCeEEEEecc
Q 026473 4 ELGKINIKRFADGE-----I-Y---VQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRAS-AKNITAVIPY 69 (238)
Q Consensus 4 ~~~~~~~~~F~dGE-----~-~---v~i~~~v~g~~v~ivqs~~~~~~~~l~ell~~~~a~~~~~-a~~i~~viPY 69 (238)
++..+....|-|+. . . ..+..++.|++|+||......- . -|..+++.|++.| ++++..+.-+
T Consensus 62 ~~~~l~~~~y~~~~~~~~~~~~~~~~~l~~~v~gr~VLIVDDIidTG--~--Tl~~~~~~L~~~G~~~~v~~avL~ 133 (176)
T PRK05205 62 PVGELDITLYRDDLTKKGLHPQVKPTDIPFDIEGKRVILVDDVLYTG--R--TIRAALDALFDYGRPARVQLAVLV 133 (176)
T ss_pred ccceEEEEEeecCccccCcccccccccCCCCCCCCEEEEEecccCcH--H--HHHHHHHHHHhcCCCcEEEEEEEE
Confidence 34555556665532 1 1 2244578999999998865432 2 2556678888888 6777655543
No 128
>KOG4203 consensus Armadillo/beta-Catenin/plakoglobin [Signal transduction mechanisms; Cytoskeleton]
Probab=55.54 E-value=24 Score=33.38 Aligned_cols=77 Identities=17% Similarity=0.210 Sum_probs=50.7
Q ss_pred EEEEeCCCchHHHHHHHHHcCCCCEEEEEEEeCCCCc-EEE--EEeccCCCCCEEEEEeCcccchHHHHHHHHHHHHCCC
Q 026473 144 VVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNV-AEV--MNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGA 220 (238)
Q Consensus 144 viv~pd~g~~~~a~~~a~~l~~~~~~~~~k~r~~~~~-~~~--~~~~~~v~gk~vlIVDDii~TG~Tl~~a~~~Lk~~Ga 220 (238)
..++....|-.....+.....+.++..+--+|.++.. .+. ..++.++... |++.|-+++||++...|...|.+.|.
T Consensus 336 ~gv~i~r~g~~~~~alr~~~~~vri~~il~qr~~~t~~~~l~~~~lP~~is~~-V~ll~p~~~tg~~~~~a~~~ll~~gv 414 (473)
T KOG4203|consen 336 CGVSIPRSGESMETALRAACKGVRIGKILIQRDEETGEPELHYEKLPKDISDR-VLLLDPVLATGNSAMMAIILLLDHGV 414 (473)
T ss_pred ccCCCCcchhHHHHHHHHHcCCceeeeeEeechhhccchhhhhhhCccccccc-eeeecchhhcchhHHHHHHHHHhCCC
Confidence 3355566666666666665544666555445654322 111 1344456555 99999999999999999999999994
Q ss_pred C
Q 026473 221 R 221 (238)
Q Consensus 221 ~ 221 (238)
.
T Consensus 415 ~ 415 (473)
T KOG4203|consen 415 P 415 (473)
T ss_pred c
Confidence 3
No 129
>PLN02962 hydroxyacylglutathione hydrolase
Probab=54.74 E-value=21 Score=30.82 Aligned_cols=40 Identities=25% Similarity=0.361 Sum_probs=29.2
Q ss_pred CCCCEEEEEeCcccchHHHHHHHHHHHHCCCCEEEEEEEcccc
Q 026473 190 VKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHAVF 232 (238)
Q Consensus 190 v~gk~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~~f 232 (238)
..++.++|||-.- .......+.+++.|.+-..+++||+=+
T Consensus 33 ~~~~~avlIDP~~---~~~~~~l~~l~~~g~~i~~Il~TH~H~ 72 (251)
T PLN02962 33 HPDKPALLIDPVD---KTVDRDLSLVKELGLKLIYAMNTHVHA 72 (251)
T ss_pred CCCCEEEEECCCC---CcHHHHHHHHHHCCCeeEEEEcCCCCc
Confidence 3467899999632 233455678888999888999999843
No 130
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=53.89 E-value=28 Score=24.78 Aligned_cols=33 Identities=24% Similarity=0.275 Sum_probs=26.6
Q ss_pred CCCEEEEEeCcccchHHHHHHHHHHHHCCCCEEEEE
Q 026473 191 KGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYAC 226 (238)
Q Consensus 191 ~gk~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~ 226 (238)
+++.++++.+ +|.....++..|++.|-..|+.+
T Consensus 57 ~~~~vv~~c~---~g~rs~~~~~~l~~~G~~~v~~l 89 (101)
T cd01528 57 PDKDIVVLCH---HGGRSMQVAQWLLRQGFENVYNL 89 (101)
T ss_pred CCCeEEEEeC---CCchHHHHHHHHHHcCCccEEEe
Confidence 4678888854 78888999999999999877643
No 131
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=53.55 E-value=30 Score=24.68 Aligned_cols=32 Identities=31% Similarity=0.414 Sum_probs=26.2
Q ss_pred CCCEEEEEeCcccchHHHHHHHHHHHHCCCCEEEE
Q 026473 191 KGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYA 225 (238)
Q Consensus 191 ~gk~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~ 225 (238)
+++.++++. .+|..-..++..|++.|.+.|+.
T Consensus 60 ~~~~ivvyC---~~G~rs~~a~~~L~~~G~~~v~~ 91 (101)
T cd01518 60 KGKKVLMYC---TGGIRCEKASAYLKERGFKNVYQ 91 (101)
T ss_pred CCCEEEEEC---CCchhHHHHHHHHHHhCCcceee
Confidence 567888886 48888888999999999987754
No 132
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=53.02 E-value=24 Score=24.90 Aligned_cols=32 Identities=19% Similarity=0.260 Sum_probs=24.6
Q ss_pred CCCEEEEEeCcccchHH--HHHHHHHHHHCCCCEEEE
Q 026473 191 KGKVAVMVDDMIDTAGT--IAKGAALLHQEGAREVYA 225 (238)
Q Consensus 191 ~gk~vlIVDDii~TG~T--l~~a~~~Lk~~Ga~~V~~ 225 (238)
+++.++++. .+|.+ ...+++.|++.|-+.|+.
T Consensus 49 ~~~~ivl~c---~~G~~~~s~~aa~~L~~~G~~~v~~ 82 (92)
T cd01532 49 RDTPIVVYG---EGGGEDLAPRAARRLSELGYTDVAL 82 (92)
T ss_pred CCCeEEEEe---CCCCchHHHHHHHHHHHcCccCEEE
Confidence 467888885 46654 578889999999998873
No 133
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=52.91 E-value=27 Score=24.96 Aligned_cols=33 Identities=18% Similarity=0.076 Sum_probs=27.4
Q ss_pred CCCEEEEEeCcccchHHHHHHHHHHHHCCCCEEEEE
Q 026473 191 KGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYAC 226 (238)
Q Consensus 191 ~gk~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~ 226 (238)
+++.+++++ .+|.+...++..|+..|-+.|+.+
T Consensus 65 ~~~~ivv~c---~~g~~s~~~~~~l~~~G~~~v~~~ 97 (106)
T cd01519 65 KDKELIFYC---KAGVRSKAAAELARSLGYENVGNY 97 (106)
T ss_pred CCCeEEEEC---CCcHHHHHHHHHHHHcCCccceec
Confidence 577888884 578888899999999999888754
No 134
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=52.71 E-value=1.1e+02 Score=23.92 Aligned_cols=105 Identities=25% Similarity=0.287 Sum_probs=65.6
Q ss_pred CchhHHHHHHHHHHHHhcCCCeEEEEecccCccccccccCCCCchhHHHHHHHHHHhCCCEEEEEecCChhccCccCccC
Q 026473 41 ANENLMELLIMIDACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPV 120 (238)
Q Consensus 41 ~~~~l~ell~~~~a~~~~~a~~i~~viPY~~YsRqdr~~~~~~~~~~~~~a~ll~~~g~~~vi~vdlHs~~~~~~f~~~~ 120 (238)
.++.-.|++-....+++..-..+++++ ++ .. +=....+.+.+...|+|+++.++- +.... |+
T Consensus 13 l~~~~~e~l~~A~~La~~~g~~v~av~--~G-~~---------~~~~~~l~~~l~~~G~d~v~~~~~--~~~~~-~~--- 74 (164)
T PF01012_consen 13 LNPVSLEALEAARRLAEALGGEVTAVV--LG-PA---------EEAAEALRKALAKYGADKVYHIDD--PALAE-YD--- 74 (164)
T ss_dssp E-HHHHHHHHHHHHHHHCTTSEEEEEE--EE-TC---------CCHHHHHHHHHHSTTESEEEEEE---GGGTT-C----
T ss_pred cCHHHHHHHHHHHHHHhhcCCeEEEEE--Ee-cc---------hhhHHHHhhhhhhcCCcEEEEecC--ccccc-cC---
Confidence 466677888888888876545787775 22 10 113356677788799999999871 11111 11
Q ss_pred ccccccHHHHHHHHhccCCCCCeEEEEeCCCchHHHHHHHHHcCCCCE
Q 026473 121 DHVYCQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPL 168 (238)
Q Consensus 121 ~~l~~~~~la~~i~~~~~~~~~~viv~pd~g~~~~a~~~a~~l~~~~~ 168 (238)
.......+++.+.+. .-+.++++....|-..+..+|.+|+ .++
T Consensus 75 -~~~~a~~l~~~~~~~---~~~lVl~~~t~~g~~la~~lA~~L~-~~~ 117 (164)
T PF01012_consen 75 -PEAYADALAELIKEE---GPDLVLFGSTSFGRDLAPRLAARLG-APL 117 (164)
T ss_dssp -HHHHHHHHHHHHHHH---T-SEEEEESSHHHHHHHHHHHHHHT--EE
T ss_pred -HHHHHHHHHHHHHhc---CCCEEEEcCcCCCCcHHHHHHHHhC-CCc
Confidence 111245566666553 2356777778888889999999998 776
No 135
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=51.38 E-value=28 Score=32.78 Aligned_cols=40 Identities=28% Similarity=0.320 Sum_probs=26.7
Q ss_pred CCcCCCcEEEEecCCCCCchhHHHHHHHHHHHHhcCCCeEEEEe
Q 026473 24 ESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVI 67 (238)
Q Consensus 24 ~~v~g~~v~ivqs~~~~~~~~l~ell~~~~a~~~~~a~~i~~vi 67 (238)
+.++||.|++|..-- +--.. .-.+++.+|++||+.|.+-+
T Consensus 344 ~~v~GKrVvlVDDSI--VRGTT--sr~IV~mlReAGAkEVHvri 383 (470)
T COG0034 344 EVVKGKRVVLVDDSI--VRGTT--SRRIVQMLREAGAKEVHVRI 383 (470)
T ss_pred HHhCCCeEEEEcccc--ccCcc--HHHHHHHHHHhCCCEEEEEe
Confidence 567899999886410 11111 34567788999999988653
No 136
>PRK13811 orotate phosphoribosyltransferase; Provisional
Probab=51.29 E-value=68 Score=25.75 Aligned_cols=64 Identities=22% Similarity=0.253 Sum_probs=39.4
Q ss_pred CCceeeeeeeeeCCCceEEEecCCcCCCcEEEEecCCCCCchhHHHHHHHHHHHHhcCCCeEEEEecccC
Q 026473 2 GVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVIPYFG 71 (238)
Q Consensus 2 ~~~~~~~~~~~F~dGE~~v~i~~~v~g~~v~ivqs~~~~~~~~l~ell~~~~a~~~~~a~~i~~viPY~~ 71 (238)
|.+..-+.-.+...|+..... ..++|++|+||...... -. -+.-.++.++++|| ++..++-.+.
T Consensus 79 ~~p~~~~rK~~k~~g~~~~~~-g~~~g~~VlIVDDvi~T-G~---T~~~~~~~l~~~Ga-~v~~~~~~vd 142 (170)
T PRK13811 79 GKPYAIIRKEAKDHGKAGLII-GDVKGKRVLLVEDVTTS-GG---SALYGIEQLRAAGA-VVDDVVTVVD 142 (170)
T ss_pred CCCEEEEecCCCCCCCcceEE-cccCCCEEEEEEecccc-cH---HHHHHHHHHHHCCC-eEEEEEEEEE
Confidence 455544444444556654433 35899999999876432 12 25667788899997 5555555554
No 137
>PF14681 UPRTase: Uracil phosphoribosyltransferase; PDB: 1V9S_B 1UPF_A 1UPU_D 1JLR_B 1BD4_A 1BD3_C 1JLS_D 1XTV_C 1XTU_H 3G6W_C ....
Probab=51.20 E-value=77 Score=26.32 Aligned_cols=60 Identities=23% Similarity=0.388 Sum_probs=39.3
Q ss_pred CceeeeeeeeeCCC----ceEEEecCCcCCCcEEEEecCCCCCchhHHHHHHHHHHHHhcCC--CeEEEE
Q 026473 3 VELGKINIKRFADG----EIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASA--KNITAV 66 (238)
Q Consensus 3 ~~~~~~~~~~F~dG----E~~v~i~~~v~g~~v~ivqs~~~~~~~~l~ell~~~~a~~~~~a--~~i~~v 66 (238)
.+.+.+.+.+=++. +.|.++++++.++.|+++.++...-+. +...++.|++.|+ ++|.++
T Consensus 92 a~~g~i~i~r~~~t~~p~~~y~~LP~~i~~~~VillDpmlaTG~s----~~~ai~~L~~~G~~~~~I~~v 157 (207)
T PF14681_consen 92 ARVGHIGIQRDEETLEPVLYYNKLPEDIENRKVILLDPMLATGGS----AIAAIEILKEHGVPEENIIIV 157 (207)
T ss_dssp SEEEEEEEEEETTTSSEEEEEEE--TTGTTSEEEEEESEESSSHH----HHHHHHHHHHTTG-GGEEEEE
T ss_pred cceEEEEEEEcCCccceeeeHhhCCCCccCCEEEEEeccccchhh----HHHHHHHHHHcCCCcceEEEE
Confidence 34566666664432 467788999988999999887665433 4566777888776 677644
No 138
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=51.03 E-value=44 Score=26.40 Aligned_cols=33 Identities=24% Similarity=0.209 Sum_probs=26.1
Q ss_pred CcEEEEecCCCCCchhHHHHHHHHHHHHhcCCCeEE
Q 026473 29 CDVYLVQPTCPPANENLMELLIMIDACRRASAKNIT 64 (238)
Q Consensus 29 ~~v~ivqs~~~~~~~~l~ell~~~~a~~~~~a~~i~ 64 (238)
-+|+.+.|+.. .+.-..--++++||+.|+..|.
T Consensus 64 v~vIgvSsl~g---~h~~l~~~lve~lre~G~~~i~ 96 (143)
T COG2185 64 VDVIGVSSLDG---GHLTLVPGLVEALREAGVEDIL 96 (143)
T ss_pred CCEEEEEeccc---hHHHHHHHHHHHHHHhCCcceE
Confidence 47888888743 3455567889999999999998
No 139
>KOG1448 consensus Ribose-phosphate pyrophosphokinase [Nucleotide transport and metabolism; Amino acid transport and metabolism]
Probab=50.04 E-value=69 Score=28.52 Aligned_cols=72 Identities=14% Similarity=0.125 Sum_probs=44.9
Q ss_pred HHHHHHHHHcCCCCEEEEEEEeCCCCcEEEEEeccCCCCCEEEEEeCcccc----hHHHHHHHHHHHHCCCCEEEEEE
Q 026473 154 ARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDT----AGTIAKGAALLHQEGAREVYACC 227 (238)
Q Consensus 154 ~~a~~~a~~l~~~~~~~~~k~r~~~~~~~~~~~~~~v~gk~vlIVDDii~T----G~Tl~~a~~~Lk~~Ga~~V~~~~ 227 (238)
.+++.++.+|| +++.-+.-+|..++. ...++..+++|++|.|+---+.+ =-++.-.+..++.+-|++|.++-
T Consensus 14 ~La~~I~~~lg-i~l~~v~~kkf~nge-~~v~i~esvR~~dV~iiqsgsg~ind~lmELLI~I~ac~~asa~~vTaVi 89 (316)
T KOG1448|consen 14 ELAERIAARLG-IELGKVNLKKFSNGE-TSVQIGESVRGEDVYIIQSGSGPINDNLMELLIMINACKRASASRVTAVI 89 (316)
T ss_pred HHHHHHHHHhC-CCcceeeeEEccCCc-EEEecccccccCcEEEeccCCCcchHHHHHHHHHHHhcchhhhheeEEec
Confidence 46788888888 787666655554444 23456668999999999433322 11344445556666677766554
No 140
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=47.71 E-value=33 Score=24.21 Aligned_cols=31 Identities=16% Similarity=0.160 Sum_probs=24.9
Q ss_pred CCCEEEEEeCcccchHHHHHHHHHHHHCCCCEEE
Q 026473 191 KGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVY 224 (238)
Q Consensus 191 ~gk~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~ 224 (238)
+++.+++ +|.+|.+...++..|++.|...++
T Consensus 53 ~~~~iv~---~c~~g~~s~~~~~~L~~~g~~~v~ 83 (99)
T cd01527 53 GANAIIF---HCRSGMRTQQNAERLAAISAGEAY 83 (99)
T ss_pred CCCcEEE---EeCCCchHHHHHHHHHHcCCccEE
Confidence 4566766 578999999999999999988655
No 141
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=47.36 E-value=41 Score=23.39 Aligned_cols=30 Identities=20% Similarity=0.077 Sum_probs=23.5
Q ss_pred CCEEEEEeCcccchHHHHHHHHHHHHCCCCEEEE
Q 026473 192 GKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYA 225 (238)
Q Consensus 192 gk~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~ 225 (238)
+++++++. ++|.....++..|++.|. .|..
T Consensus 51 ~~~vvl~c---~~g~~a~~~a~~L~~~G~-~v~~ 80 (90)
T cd01524 51 DKEIIVYC---AVGLRGYIAARILTQNGF-KVKN 80 (90)
T ss_pred CCcEEEEc---CCChhHHHHHHHHHHCCC-CEEE
Confidence 56788884 468888889999999998 5543
No 142
>PF02633 Creatininase: Creatinine amidohydrolase; InterPro: IPR003785 This family includes the enzymes creatininase and 2-amino-5-formylamino-6-ribosylaminopyrimidin-4(3H)-one 5'-monophosphate deformylase, also known as formamide hydrolase. Creatinase or creatinine amidohydrolase (3.5.2.10 from EC) catalyses the hydrolysis of creatinine to creatine, which can then be metabolised to urea and sarcosine by creatinase (3.5.3.3 from EC). Creatininase is a member of the urease-related amidohydrolase superfamily []. Formamide hydrolase catalyzes the hydrolysis of the formamide of 2-amino-5-formylamino-6-ribosylamino-4(3H)-pyrimidinone 5'-monophosphate (FAPy) to form 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (APy) (3.5.1.102 from EC). ; PDB: 3A6K_F 3A6F_A 3A6D_B 1J2U_B 3A6J_C 1J2T_A 3A6G_C 3A6H_F 1Q3K_E 3A6L_C ....
Probab=46.28 E-value=84 Score=26.49 Aligned_cols=81 Identities=16% Similarity=0.231 Sum_probs=46.3
Q ss_pred chhHHHHHHHHHHHHhcCCCeEEEEecccCcccccccc-CCC-CchhHHHHHHH-------HHHhCCCEEEEEecCChhc
Q 026473 42 NENLMELLIMIDACRRASAKNITAVIPYFGYARADRKT-QGR-ESIAAKLVANL-------ITEAGADRVLACDLHSGQS 112 (238)
Q Consensus 42 ~~~l~ell~~~~a~~~~~a~~i~~viPY~~YsRqdr~~-~~~-~~~~~~~~a~l-------l~~~g~~~vi~vdlHs~~~ 112 (238)
.|.++--.+...+.++.+. .+|.|-++|.-..-.. -+| =.++...+..+ |...|+.+++.++=|-++.
T Consensus 37 tD~~ia~~~a~~~a~~~~~---~lv~P~i~yG~s~~h~~fpGTisl~~~t~~~~l~di~~sl~~~Gf~~ivivngHgGN~ 113 (237)
T PF02633_consen 37 TDTLIAEAVAERAAERLGE---ALVLPPIPYGCSPHHMGFPGTISLSPETLIALLRDILRSLARHGFRRIVIVNGHGGNI 113 (237)
T ss_dssp HHHHHHHHHHHHHHHHHTH---EEE---B--BB-GCCTTSTT-BBB-HHHHHHHHHHHHHHHHHHT--EEEEEESSTTHH
T ss_pred HHHHHHHHHHHHHHHHCCc---EEEeCCCccccCcccCCCCCeEEeCHHHHHHHHHHHHHHHHHcCCCEEEEEECCHhHH
Confidence 4888888889999999886 7899988887643221 233 23444444333 3456999999999987643
Q ss_pred cCccCccCccccccHHHHHHHHhc
Q 026473 113 MGYFDIPVDHVYCQPVILDYLASK 136 (238)
Q Consensus 113 ~~~f~~~~~~l~~~~~la~~i~~~ 136 (238)
. +....++.+..+
T Consensus 114 ~-----------~l~~~~~~l~~~ 126 (237)
T PF02633_consen 114 A-----------ALEAAARELRQE 126 (237)
T ss_dssp H-----------HHHHHHHHHHHH
T ss_pred H-----------HHHHHHHHHHhh
Confidence 2 145556666554
No 143
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=45.94 E-value=47 Score=30.05 Aligned_cols=36 Identities=17% Similarity=0.211 Sum_probs=31.8
Q ss_pred cCCCCCEEEEEeCcccchHHHHHHHHHHHHCCCCEEEEEE
Q 026473 188 GDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACC 227 (238)
Q Consensus 188 ~~v~gk~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~ 227 (238)
++++||+|+|| -+|.+-..+++.|.++|++.|.++-
T Consensus 170 ~~l~~k~vLvI----GaGem~~l~a~~L~~~g~~~i~v~n 205 (338)
T PRK00676 170 QKSKKASLLFI----GYSEINRKVAYYLQRQGYSRITFCS 205 (338)
T ss_pred CCccCCEEEEE----cccHHHHHHHHHHHHcCCCEEEEEc
Confidence 67899999976 6899999999999999999888765
No 144
>KOG1503 consensus Phosphoribosylpyrophosphate synthetase-associated protein [Amino acid transport and metabolism; Nucleotide transport and metabolism]
Probab=45.65 E-value=2e+02 Score=24.94 Aligned_cols=79 Identities=11% Similarity=0.107 Sum_probs=45.6
Q ss_pred hHHHHHHHHHcCCCCEEEEEEEeCCCCcEEEEEeccCCCCCEEEEEeCcccchH----HHHHHHHHHHHCCCCEEEEEEE
Q 026473 153 VARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAG----TIAKGAALLHQEGAREVYACCT 228 (238)
Q Consensus 153 ~~~a~~~a~~l~~~~~~~~~k~r~~~~~~~~~~~~~~v~gk~vlIVDDii~TG~----Tl~~a~~~Lk~~Ga~~V~~~~t 228 (238)
-.+|+.++++|| ..+.-..-+...+.+ ....+...++||+|.|+.-.--.-+ -+.-.+-.+|..-|++|..+..
T Consensus 18 ~elak~vaerlg-i~~g~~~vy~~tnre-t~vei~~svrgkdvfiiqt~skdvn~~vmellim~yackts~aksiigvip 95 (354)
T KOG1503|consen 18 PELAKMVAERLG-IELGKATVYQKTNRE-TRVEIKESVRGKDVFIIQTGSKDVNNDVMELLIMAYACKTSCAKSIIGVIP 95 (354)
T ss_pred HHHHHHHHHHhc-ccccceEEEecCCCc-eEEEhhhhccCceEEEEEecCcccchHHHHHHHHHHHHhhhhhhceEEEee
Confidence 367888888888 665332222221111 1234566899999999874433222 2333344667777888877665
Q ss_pred ccccc
Q 026473 229 HAVFR 233 (238)
Q Consensus 229 H~~fs 233 (238)
..-+|
T Consensus 96 y~pys 100 (354)
T KOG1503|consen 96 YLPYS 100 (354)
T ss_pred cCccc
Confidence 44433
No 145
>COG2820 Udp Uridine phosphorylase [Nucleotide transport and metabolism]
Probab=45.50 E-value=1.5e+02 Score=25.55 Aligned_cols=79 Identities=24% Similarity=0.299 Sum_probs=51.7
Q ss_pred CCCchHHHHHHHHHcCCCCEEEEEEEeCCCCcEEEEEeccCCCCCEEEEEeCcccchHHHHHHHHHHHHCCCCEEEEEEE
Q 026473 149 DVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCT 228 (238)
Q Consensus 149 d~g~~~~a~~~a~~l~~~~~~~~~k~r~~~~~~~~~~~~~~v~gk~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~t 228 (238)
..|--.|+..+|+.+.+ +- .+...| +.....|.++|+.|.+.---|- |-+..=|++.|.+.|++...=+-|
T Consensus 22 lpGdP~R~~~iA~lld~-~~-~va~~R------ef~~~~g~~~g~~v~v~StGIG-gPSaaIAvEEL~~lGa~tfiRVGT 92 (248)
T COG2820 22 LPGDPERVEKIAKLLDN-PV-LVASNR------EFRTYTGTYNGKPVTVCSTGIG-GPSAAIAVEELARLGAKTFIRVGT 92 (248)
T ss_pred ecCCHHHHHHHHHHhcc-ch-hhhhcc------ceEEEEEEEcCeEEEEEecCCC-CchHHHHHHHHHhcCCeEEEEeec
Confidence 35555678889998873 21 122222 2334567788999987665553 345666788899999998766667
Q ss_pred cccccCCC
Q 026473 229 HAVFRLDY 236 (238)
Q Consensus 229 H~~fs~~~ 236 (238)
-|-+..+.
T Consensus 93 ~Galq~~i 100 (248)
T COG2820 93 TGALQPDI 100 (248)
T ss_pred cccccCCC
Confidence 77665543
No 146
>PLN02160 thiosulfate sulfurtransferase
Probab=44.93 E-value=39 Score=26.01 Aligned_cols=33 Identities=12% Similarity=0.069 Sum_probs=27.2
Q ss_pred CCCEEEEEeCcccchHHHHHHHHHHHHCCCCEEEEE
Q 026473 191 KGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYAC 226 (238)
Q Consensus 191 ~gk~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~ 226 (238)
++++++++ |.+|.+-..+++.|++.|.+.|+.+
T Consensus 80 ~~~~Iivy---C~sG~RS~~Aa~~L~~~G~~~v~~l 112 (136)
T PLN02160 80 PADDILVG---CQSGARSLKATTELVAAGYKKVRNK 112 (136)
T ss_pred CCCcEEEE---CCCcHHHHHHHHHHHHcCCCCeeec
Confidence 45677776 7899999999999999999887643
No 147
>PRK02304 adenine phosphoribosyltransferase; Provisional
Probab=44.30 E-value=1.1e+02 Score=24.56 Aligned_cols=52 Identities=15% Similarity=0.109 Sum_probs=32.7
Q ss_pred CceEEEec--CCcCCCcEEEEecCCCCCchhHHHHHHHHHHHHhcCCCeEEEEecccCc
Q 026473 16 GEIYVQLQ--ESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVIPYFGY 72 (238)
Q Consensus 16 GE~~v~i~--~~v~g~~v~ivqs~~~~~~~~l~ell~~~~a~~~~~a~~i~~viPY~~Y 72 (238)
|+..+.+. ..++|++|+||......- . - +.-+++.++++|++.+. +.-.+..
T Consensus 100 ~~~~l~l~~~~~~~g~~VLIVDDivtTG-~-T--l~~~~~~l~~~Ga~~v~-v~vl~~~ 153 (175)
T PRK02304 100 GTDTLEIHKDAIKPGDRVLIVDDLLATG-G-T--LEAAIKLLERLGAEVVG-AAFVIEL 153 (175)
T ss_pred CceEEEEchhhcCCCCEEEEEeCCcccc-H-H--HHHHHHHHHHcCCEEEE-EEEEEEc
Confidence 34444444 337899999998875432 2 2 56677888999997553 4344433
No 148
>PTZ00149 hypoxanthine phosphoribosyltransferase; Provisional
Probab=43.57 E-value=94 Score=26.71 Aligned_cols=60 Identities=13% Similarity=0.282 Sum_probs=39.7
Q ss_pred eeeeeeeeCC----CceEEEec--CCcCCCcEEEEecCCCCCchhHHHHHHHHHHHHhcCCCeEEEEecc
Q 026473 6 GKINIKRFAD----GEIYVQLQ--ESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVIPY 69 (238)
Q Consensus 6 ~~~~~~~F~d----GE~~v~i~--~~v~g~~v~ivqs~~~~~~~~l~ell~~~~a~~~~~a~~i~~viPY 69 (238)
..+.++.|.| ||+.+.-. .++.|++|+||...... -.. +..+++.|++.|++++.++.-.
T Consensus 122 dfi~vsSY~~~~s~g~v~i~~~~~~~l~gk~VLIVDDIidT--G~T--l~~~~~~L~~~g~~~V~va~L~ 187 (241)
T PTZ00149 122 HYVRVKSYCNDESTGKLEIVSDDLSCLKDKHVLIVEDIIDT--GNT--LVKFCEYLKKFEPKTIRIATLF 187 (241)
T ss_pred cEEEEEEccCCCcCCceEEecccccccCCCEEEEEEeEeCh--HHH--HHHHHHHHHhcCCCEEEEEEEE
Confidence 5556666644 66666532 46899999999876432 222 4455578899999998766543
No 149
>PF02006 DUF137: Protein of unknown function DUF137; InterPro: IPR002855 The archaeal proteins in this family have no known function.
Probab=43.53 E-value=60 Score=26.47 Aligned_cols=83 Identities=20% Similarity=0.334 Sum_probs=51.2
Q ss_pred HHHHHHHhcCCCeEEEE-------ecccCccccccccCCCCchhHH---------HHHHHHHHhCCCEEEEEecCC-hhc
Q 026473 50 IMIDACRRASAKNITAV-------IPYFGYARADRKTQGRESIAAK---------LVANLITEAGADRVLACDLHS-GQS 112 (238)
Q Consensus 50 ~~~~a~~~~~a~~i~~v-------iPY~~YsRqdr~~~~~~~~~~~---------~~a~ll~~~g~~~vi~vdlHs-~~~ 112 (238)
-+.+-|++.||+.+-.+ +|=+.-.|. +....| ..+|. .-++.|..+| ..+|++||.- ++.
T Consensus 48 ~I~~~L~~~Ga~~vlG~~~d~~~~ip~L~~~R~-~v~~~G-Iy~ADVVLVPLEDGDR~EAL~~mG-K~VIaIDLNPLSRT 124 (178)
T PF02006_consen 48 KIAELLREHGAEEVLGVNPDASERIPGLDHERA-KVSKEG-IYSADVVLVPLEDGDRTEALVKMG-KTVIAIDLNPLSRT 124 (178)
T ss_pred HHHHHHHHcCCCEeeccCCcccccCCCCCCccc-eECccc-ceeccEEEeccCCCcHHHHHHHcC-CeEEEEeCCCcccc
Confidence 45678899999988766 666666653 222222 12222 3467788887 8999999974 233
Q ss_pred cCccCcc-Ccccc-ccHHHHHHHHh
Q 026473 113 MGYFDIP-VDHVY-CQPVILDYLAS 135 (238)
Q Consensus 113 ~~~f~~~-~~~l~-~~~~la~~i~~ 135 (238)
...=+++ ++|+. +.|.+.++..+
T Consensus 125 ar~AtitIVDni~RA~p~~~~~~~~ 149 (178)
T PF02006_consen 125 ARTATITIVDNITRAIPNMIEFARE 149 (178)
T ss_pred cccCceeeehhHHHHHHHHHHHHHH
Confidence 2222333 46664 77877777655
No 150
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a
Probab=43.30 E-value=58 Score=25.61 Aligned_cols=40 Identities=28% Similarity=0.273 Sum_probs=29.7
Q ss_pred CCCCCEEEEEeCccc-------chH-------HHHHHHHHHHHCCCCEEEEEEE
Q 026473 189 DVKGKVAVMVDDMID-------TAG-------TIAKGAALLHQEGAREVYACCT 228 (238)
Q Consensus 189 ~v~gk~vlIVDDii~-------TG~-------Tl~~a~~~Lk~~Ga~~V~~~~t 228 (238)
|++||-|++..+-++ +|+ ++..=.+..+++||.-|.++..
T Consensus 45 DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~gvIii~~ 98 (142)
T cd04814 45 DVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGAAGVLIVHE 98 (142)
T ss_pred CCCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHHHCCCcEEEEEeC
Confidence 899999999876552 112 5666777888999998877653
No 151
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=43.19 E-value=57 Score=25.48 Aligned_cols=39 Identities=23% Similarity=0.242 Sum_probs=29.7
Q ss_pred CCCCCEEEEEeCcccch--------HHHHHHHHHHHHCCCCEEEEEE
Q 026473 189 DVKGKVAVMVDDMIDTA--------GTIAKGAALLHQEGAREVYACC 227 (238)
Q Consensus 189 ~v~gk~vlIVDDii~TG--------~Tl~~a~~~Lk~~Ga~~V~~~~ 227 (238)
|++||-||+.....+.. ++...=.+...++||.-|.++.
T Consensus 47 DVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~ 93 (137)
T cd04820 47 DVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLT 93 (137)
T ss_pred CCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEEe
Confidence 89999998888776421 3466667788899999887765
No 152
>TIGR01134 purF amidophosphoribosyltransferase. Alternate name: glutamine phosphoribosylpyrophosphate (PRPP) amidotransferase.
Probab=43.10 E-value=1.1e+02 Score=28.77 Aligned_cols=41 Identities=27% Similarity=0.284 Sum_probs=30.0
Q ss_pred CCcCCCcEEEEecCCCCCchhHHHHHHHHHHHHhcCCCeEEEEec
Q 026473 24 ESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVIP 68 (238)
Q Consensus 24 ~~v~g~~v~ivqs~~~~~~~~l~ell~~~~a~~~~~a~~i~~viP 68 (238)
..++|++|++|...-- .-.. +--++.+|+++||+.|.+.+.
T Consensus 334 ~~~~gk~v~lvDD~it--tG~T--~~~~~~~l~~~ga~~v~~~~~ 374 (442)
T TIGR01134 334 EVFRGKRVVLVDDSIV--RGTT--SRQIVKMLRDAGAKEVHVRIA 374 (442)
T ss_pred ccCCCCEEEEEecccc--ccHH--HHHHHHHHHHcCCcEEEEEEc
Confidence 4578999999976432 1222 345679999999999998877
No 153
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=42.91 E-value=48 Score=23.54 Aligned_cols=32 Identities=34% Similarity=0.363 Sum_probs=25.4
Q ss_pred CCCEEEEEeCcccchHHHHHHHHHHHHCCCCEEEE
Q 026473 191 KGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYA 225 (238)
Q Consensus 191 ~gk~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~ 225 (238)
+++.+++++ ++|.+...++..|+..|...|+.
T Consensus 64 ~~~~vv~~c---~~g~~s~~~a~~L~~~G~~~v~~ 95 (105)
T cd01525 64 KGKIIVIVS---HSHKHAALFAAFLVKCGVPRVCI 95 (105)
T ss_pred cCCeEEEEe---CCCccHHHHHHHHHHcCCCCEEE
Confidence 367788875 57778888888999999988764
No 154
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=42.73 E-value=62 Score=23.59 Aligned_cols=32 Identities=9% Similarity=0.086 Sum_probs=26.5
Q ss_pred CCCEEEEEeCcccchHHHHHHHHHHHHCCCCEEEE
Q 026473 191 KGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYA 225 (238)
Q Consensus 191 ~gk~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~ 225 (238)
+++.++++ |.+|.....++..|++.|-..|+.
T Consensus 57 ~~~~vvly---C~~G~rS~~aa~~L~~~G~~~v~~ 88 (101)
T TIGR02981 57 KNDTVKLY---CNAGRQSGMAKDILLDMGYTHAEN 88 (101)
T ss_pred CCCeEEEE---eCCCHHHHHHHHHHHHcCCCeEEe
Confidence 34567776 778999999999999999998875
No 155
>PRK00455 pyrE orotate phosphoribosyltransferase; Validated
Probab=42.45 E-value=1.2e+02 Score=24.97 Aligned_cols=38 Identities=21% Similarity=0.275 Sum_probs=26.0
Q ss_pred CcCCCcEEEEecCCCCCchhHHHHHHHHHHHHhcCCCeEEEE
Q 026473 25 SVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAV 66 (238)
Q Consensus 25 ~v~g~~v~ivqs~~~~~~~~l~ell~~~~a~~~~~a~~i~~v 66 (238)
..+|++|+||...-..- .. +.-+++.+++.|++.+.++
T Consensus 110 ~~~g~~VliVDDvi~tG-~T---l~~~~~~l~~~Ga~~v~~~ 147 (202)
T PRK00455 110 RLFGKRVLVVEDVITTG-GS---VLEAVEAIRAAGAEVVGVA 147 (202)
T ss_pred CCCCCEEEEEecccCCc-HH---HHHHHHHHHHcCCEEEEEE
Confidence 45799999998764332 22 4556788899998765543
No 156
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=42.39 E-value=1.3e+02 Score=23.22 Aligned_cols=73 Identities=16% Similarity=0.261 Sum_probs=42.6
Q ss_pred hhHHHHHHHHHHHHhcCCCeEEEEecccC-------ccccccccCCCCchhHHHHHHHHHHhCCCEEEEEecCChhccCc
Q 026473 43 ENLMELLIMIDACRRASAKNITAVIPYFG-------YARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGY 115 (238)
Q Consensus 43 ~~l~ell~~~~a~~~~~a~~i~~viPY~~-------YsRqdr~~~~~~~~~~~~~a~ll~~~g~~~vi~vdlHs~~~~~~ 115 (238)
...=.|-++++.|++.|++-.-+++|--+ ++++.|. -.-+-+..++.+.|+ =.+|+.+..-..+
T Consensus 33 pEy~Dl~l~L~~~k~~g~~~lfVi~PvNg~wydytG~~~~~r~------~~y~kI~~~~~~~gf---~v~D~s~~~y~~y 103 (130)
T PF04914_consen 33 PEYDDLQLLLDVCKELGIDVLFVIQPVNGKWYDYTGLSKEMRQ------EYYKKIKYQLKSQGF---NVADFSDDEYEPY 103 (130)
T ss_dssp THHHHHHHHHHHHHHTT-EEEEEE----HHHHHHTT--HHHHH------HHHHHHHHHHHTTT-----EEE-TTGTTSTT
T ss_pred ccHHHHHHHHHHHHHcCCceEEEecCCcHHHHHHhCCCHHHHH------HHHHHHHHHHHHCCC---EEEecccCCCCCc
Confidence 35677899999999999988888888544 3443332 123457778888886 4568888777666
Q ss_pred cCccCcccc
Q 026473 116 FDIPVDHVY 124 (238)
Q Consensus 116 f~~~~~~l~ 124 (238)
|=..+.++.
T Consensus 104 fm~D~iHlg 112 (130)
T PF04914_consen 104 FMQDTIHLG 112 (130)
T ss_dssp SBSSSSSB-
T ss_pred eeeecccCc
Confidence 644444443
No 157
>TIGR01367 pyrE_Therm orotate phosphoribosyltransferase, Thermus family. This model represents a distinct clade of orotate phosphoribosyltransferases. Members include the experimentally determined example from Thermus aquaticus and additional examples from Caulobacter crescentus, Helicobacter pylori, Mesorhizobium loti, and related species.
Probab=42.31 E-value=1.3e+02 Score=24.52 Aligned_cols=46 Identities=15% Similarity=0.125 Sum_probs=30.4
Q ss_pred CceEEEecCC-cCCCcEEEEecCCCCCchhHHHHHHHHHHHHhcCCCeEEE
Q 026473 16 GEIYVQLQES-VRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITA 65 (238)
Q Consensus 16 GE~~v~i~~~-v~g~~v~ivqs~~~~~~~~l~ell~~~~a~~~~~a~~i~~ 65 (238)
|+..+.-... .+|++|+||...-.. -. -+..+++.+++.|++.+.+
T Consensus 92 ~~~~~~~~~~l~~G~~VLIVDDIi~T--G~--Tl~~a~~~l~~~Ga~vv~~ 138 (187)
T TIGR01367 92 GGMKLRRGFAVKPGEKFVAVEDVVTT--GG--SLLEAIRAIEGQGGQVVGL 138 (187)
T ss_pred CcEEEeecccCCCCCEEEEEEeeecc--hH--HHHHHHHHHHHcCCeEEEE
Confidence 6666654433 479999999876432 12 2455667789999986643
No 158
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=42.25 E-value=53 Score=23.72 Aligned_cols=31 Identities=19% Similarity=0.060 Sum_probs=24.8
Q ss_pred CCCEEEEEeCcccchHHHHHHHHHHHHCCCCE-EE
Q 026473 191 KGKVAVMVDDMIDTAGTIAKGAALLHQEGARE-VY 224 (238)
Q Consensus 191 ~gk~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~-V~ 224 (238)
+++.++++ |.+|..-..++..|++.|-+. |+
T Consensus 65 ~~~~ivv~---C~~G~rs~~a~~~L~~~G~~~~v~ 96 (109)
T cd01533 65 PRTPIVVN---CAGRTRSIIGAQSLINAGLPNPVA 96 (109)
T ss_pred CCCeEEEE---CCCCchHHHHHHHHHHCCCCccee
Confidence 45678887 678888888899999999875 54
No 159
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=42.02 E-value=30 Score=24.40 Aligned_cols=32 Identities=22% Similarity=0.200 Sum_probs=25.8
Q ss_pred CCCEEEEEeCcccchHHHHHHHHHHHHCCCCEEEE
Q 026473 191 KGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYA 225 (238)
Q Consensus 191 ~gk~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~ 225 (238)
+++.+++++ .+|.+...++..|++.|...|+.
T Consensus 60 ~~~~ivv~c---~~g~~s~~~~~~l~~~G~~~v~~ 91 (103)
T cd01447 60 EDKPFVFYC---ASGWRSALAGKTLQDMGLKPVYN 91 (103)
T ss_pred CCCeEEEEc---CCCCcHHHHHHHHHHcChHHhEe
Confidence 567899986 46877788899999999887763
No 160
>PRK05320 rhodanese superfamily protein; Provisional
Probab=41.72 E-value=52 Score=28.44 Aligned_cols=32 Identities=25% Similarity=0.321 Sum_probs=29.0
Q ss_pred CCCCEEEEEeCcccchHHHHHHHHHHHHCCCCEEE
Q 026473 190 VKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVY 224 (238)
Q Consensus 190 v~gk~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~ 224 (238)
+++|.++++ |++|.....|+..|++.|-+.|+
T Consensus 173 ~kdk~Ivvy---C~~G~Rs~~Aa~~L~~~Gf~~V~ 204 (257)
T PRK05320 173 LAGKTVVSF---CTGGIRCEKAAIHMQEVGIDNVY 204 (257)
T ss_pred cCCCeEEEE---CCCCHHHHHHHHHHHHcCCcceE
Confidence 478999998 89999999999999999998886
No 161
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=40.64 E-value=65 Score=28.36 Aligned_cols=35 Identities=26% Similarity=0.391 Sum_probs=30.7
Q ss_pred CCCCCEEEEEeCcccchHHHHHHHHHHHHCCCCEEEEEE
Q 026473 189 DVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACC 227 (238)
Q Consensus 189 ~v~gk~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~ 227 (238)
+++|++++|+ -.||+-.+++-.|++.|+++|.++.
T Consensus 123 ~~~~~~vlil----GAGGAarAv~~aL~~~g~~~i~V~N 157 (283)
T COG0169 123 DVTGKRVLIL----GAGGAARAVAFALAEAGAKRITVVN 157 (283)
T ss_pred ccCCCEEEEE----CCcHHHHHHHHHHHHcCCCEEEEEe
Confidence 5678999975 6899999999999999999998875
No 162
>PLN02469 hydroxyacylglutathione hydrolase
Probab=39.87 E-value=46 Score=28.66 Aligned_cols=38 Identities=29% Similarity=0.233 Sum_probs=28.7
Q ss_pred CCCCCEEEEEeCcccchHHHHHHHHHHHHCCCCEEEEEEEccc
Q 026473 189 DVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHAV 231 (238)
Q Consensus 189 ~v~gk~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~~ 231 (238)
+-.++.+++||- | ......+.+++.|.+--++++||+=
T Consensus 19 d~~~~~~vlIDp----~-~~~~il~~l~~~g~~l~~Il~TH~H 56 (258)
T PLN02469 19 DESTKDAAVVDP----V-DPEKVLQAAHEHGAKIKLVLTTHHH 56 (258)
T ss_pred eCCCCeEEEECC----C-ChHHHHHHHHHcCCcccEEEecCCC
Confidence 334568999994 3 3566777888889888899999974
No 163
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=39.81 E-value=74 Score=27.56 Aligned_cols=36 Identities=22% Similarity=0.280 Sum_probs=30.1
Q ss_pred CCCCCEEEEEeCcccchHHHHHHHHHHHHCCCCEEEEEEE
Q 026473 189 DVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCT 228 (238)
Q Consensus 189 ~v~gk~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~t 228 (238)
++++|+|+|+ -+|++-..++..|.+.|+.+|.++.-
T Consensus 120 ~~~~k~vlVl----GaGg~a~ai~~aL~~~g~~~V~v~~R 155 (278)
T PRK00258 120 DLKGKRILIL----GAGGAARAVILPLLDLGVAEITIVNR 155 (278)
T ss_pred CCCCCEEEEE----cCcHHHHHHHHHHHHcCCCEEEEEeC
Confidence 5788898876 57999999999999999888888753
No 164
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=39.46 E-value=76 Score=25.54 Aligned_cols=35 Identities=37% Similarity=0.457 Sum_probs=25.4
Q ss_pred cCCCCCEEEEEeCcccchHHHHH-HHHHHHHCCCCEEEEEE
Q 026473 188 GDVKGKVAVMVDDMIDTAGTIAK-GAALLHQEGAREVYACC 227 (238)
Q Consensus 188 ~~v~gk~vlIVDDii~TG~Tl~~-a~~~Lk~~Ga~~V~~~~ 227 (238)
++++||+|+|| -.|.+... +++.|++.|+ +|.++.
T Consensus 40 ~~l~gk~vlVi----G~G~~~G~~~a~~L~~~g~-~V~v~~ 75 (168)
T cd01080 40 IDLAGKKVVVV----GRSNIVGKPLAALLLNRNA-TVTVCH 75 (168)
T ss_pred CCCCCCEEEEE----CCcHHHHHHHHHHHhhCCC-EEEEEE
Confidence 47889999986 35766555 8888988988 455443
No 165
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=38.51 E-value=1.9e+02 Score=28.24 Aligned_cols=39 Identities=15% Similarity=0.268 Sum_probs=28.8
Q ss_pred CCCcEEEEecCCCCCchhHHHHHHHHHHHHhcCCCeEEEEec
Q 026473 27 RGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVIP 68 (238)
Q Consensus 27 ~g~~v~ivqs~~~~~~~~l~ell~~~~a~~~~~a~~i~~viP 68 (238)
+++.+.|+... .-|=+--..+|..+|++.|+..+...||
T Consensus 68 ~~e~I~I~gDy---D~DGitstail~~~L~~~g~~~~~~~IP 106 (575)
T PRK11070 68 EGTRIIVVGDF---DADGATSTALSVLALRSLGCSNVDYLVP 106 (575)
T ss_pred CCCEEEEEEec---CccHHHHHHHHHHHHHHcCCCceEEEeC
Confidence 45667776542 2356778888999999999977777777
No 166
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=38.42 E-value=61 Score=23.55 Aligned_cols=33 Identities=15% Similarity=0.009 Sum_probs=26.8
Q ss_pred CCCEEEEEeCcccchHHHHHHHHHHHHCCCCEEEEE
Q 026473 191 KGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYAC 226 (238)
Q Consensus 191 ~gk~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~ 226 (238)
+++.+++++ .+|.....++..|+..|-+.++.+
T Consensus 77 ~~~~iv~yc---~~g~~s~~~~~~l~~~G~~~v~~l 109 (118)
T cd01449 77 PDKPVIVYC---GSGVTACVLLLALELLGYKNVRLY 109 (118)
T ss_pred CCCCEEEEC---CcHHHHHHHHHHHHHcCCCCeeee
Confidence 678899985 568888888999999998877654
No 167
>PRK13671 hypothetical protein; Provisional
Probab=38.26 E-value=2e+02 Score=25.51 Aligned_cols=67 Identities=10% Similarity=0.105 Sum_probs=46.1
Q ss_pred EEecCCCCCchhHHHHHHHHHHHHhcCCCeEEEEecccCccccccccCCCCchhHHHHHHHHHHhCCCEEEEEec
Q 026473 33 LVQPTCPPANENLMELLIMIDACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDL 107 (238)
Q Consensus 33 ivqs~~~~~~~~l~ell~~~~a~~~~~a~~i~~viPY~~YsRqdr~~~~~~~~~~~~~a~ll~~~g~~~vi~vdl 107 (238)
||.+..|.=|. .+.++-.+.+..+...+.+++..-|.-|.. -..++...-++|....|+|-|+-++.
T Consensus 5 IIaeFNP~H~G---Hl~~~~~a~~~~~~d~vi~vpSg~~~qrg~-----pa~~~~~~R~~ma~~~G~DLViELP~ 71 (298)
T PRK13671 5 IIAEYNPFHNG---HIYQINYIKNKFPNEKIIVILSGKYTQRGE-----IAVASFEKRKKIALKYGVDKVIKLPF 71 (298)
T ss_pred EEeeeCCccHH---HHHHHHHHHHhcCCCEEEEEECcCCCCCCC-----CCCCCHHHHHHHHHHcCCCEEEeccH
Confidence 67666544233 456667777778888998887777754431 11236778889999999999996664
No 168
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=38.22 E-value=65 Score=22.59 Aligned_cols=30 Identities=33% Similarity=0.407 Sum_probs=23.9
Q ss_pred CCCEEEEEeCcccchHHHHHHHHHHHHCCCCEEE
Q 026473 191 KGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVY 224 (238)
Q Consensus 191 ~gk~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~ 224 (238)
+++.++++. .+|.....++..|++.|-+ |+
T Consensus 55 ~~~~iv~~c---~~G~rs~~aa~~L~~~G~~-v~ 84 (95)
T cd01534 55 RGARIVLAD---DDGVRADMTASWLAQMGWE-VY 84 (95)
T ss_pred CCCeEEEEC---CCCChHHHHHHHHHHcCCE-EE
Confidence 467788875 5788888889999999987 64
No 169
>TIGR01090 apt adenine phosphoribosyltransferase. A phylogenetic analysis suggested omitting the bi-directional best hit homologs from the spirochetes from the seed for this model and making only tentative predictions of adenine phosphoribosyltransferase function for this lineage.
Probab=38.09 E-value=1.3e+02 Score=23.93 Aligned_cols=38 Identities=13% Similarity=0.073 Sum_probs=26.8
Q ss_pred CcCCCcEEEEecCCCCCchhHHHHHHHHHHHHhcCCCeEEEE
Q 026473 25 SVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAV 66 (238)
Q Consensus 25 ~v~g~~v~ivqs~~~~~~~~l~ell~~~~a~~~~~a~~i~~v 66 (238)
..+|++|+||...... -.. +.-+++.|+++|++.+.++
T Consensus 106 ~~~gk~VLIVDDIitT--G~T--l~~a~~~L~~~Ga~~v~~~ 143 (169)
T TIGR01090 106 IKPGQRVLIVDDLLAT--GGT--AEATDELIRKLGGEVVEAA 143 (169)
T ss_pred cCCcCEEEEEeccccc--hHH--HHHHHHHHHHcCCEEEEEE
Confidence 4589999999876532 222 5567788999999766544
No 170
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=37.72 E-value=85 Score=23.02 Aligned_cols=32 Identities=9% Similarity=0.145 Sum_probs=26.0
Q ss_pred CCCEEEEEeCcccchHHHHHHHHHHHHCCCCEEEE
Q 026473 191 KGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYA 225 (238)
Q Consensus 191 ~gk~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~ 225 (238)
+++.++++ |++|.....+++.|++.|-..|+.
T Consensus 59 ~~~~IVly---C~~G~rS~~aa~~L~~~G~~~v~~ 90 (104)
T PRK10287 59 KNDTVKLY---CNAGRQSGQAKEILSEMGYTHAEN 90 (104)
T ss_pred CCCeEEEE---eCCChHHHHHHHHHHHcCCCeEEe
Confidence 34667777 568999999999999999988754
No 171
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=37.69 E-value=51 Score=24.51 Aligned_cols=33 Identities=18% Similarity=0.102 Sum_probs=26.3
Q ss_pred CCCEEEEEeCcccchHHHHHHHHHHHHCCC-CEEEEE
Q 026473 191 KGKVAVMVDDMIDTAGTIAKGAALLHQEGA-REVYAC 226 (238)
Q Consensus 191 ~gk~vlIVDDii~TG~Tl~~a~~~Lk~~Ga-~~V~~~ 226 (238)
+++.++++ |.+|.....++..|++.|- +.|+.+
T Consensus 71 ~~~~ivv~---C~~G~rs~~aa~~L~~~G~~~~v~~l 104 (122)
T cd01526 71 KDSPIYVV---CRRGNDSQTAVRKLKELGLERFVRDI 104 (122)
T ss_pred CCCcEEEE---CCCCCcHHHHHHHHHHcCCccceeee
Confidence 56788887 5688888889999999999 566544
No 172
>COG1926 Predicted phosphoribosyltransferases [General function prediction only]
Probab=37.39 E-value=78 Score=26.77 Aligned_cols=64 Identities=22% Similarity=0.231 Sum_probs=45.8
Q ss_pred CcCCCcEEEEecCCCCCchhHHHHHHHHHHHHhcCCCeEEEEecccCccccccccCCCCchhHHHHHHHHHHhCCCEEEE
Q 026473 25 SVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLA 104 (238)
Q Consensus 25 ~v~g~~v~ivqs~~~~~~~~l~ell~~~~a~~~~~a~~i~~viPY~~YsRqdr~~~~~~~~~~~~~a~ll~~~g~~~vi~ 104 (238)
+.+|+.|+||...... -.- ....+.+||..++++|.+..|-.|- ..+..|++ -+|.++.
T Consensus 121 ~~~g~~VIlVDDGiAT--Gat--m~aAi~~~r~~~~~~IviAVPV~p~----------------~a~~~l~s-~~D~vvc 179 (220)
T COG1926 121 SLKGRTVILVDDGIAT--GAT--MKAAVRALRAKGPKEIVIAVPVAPE----------------DAAAELES-EADEVVC 179 (220)
T ss_pred CCCCCEEEEEeCCcch--hHH--HHHHHHHHHhcCCceEEEEcccCCH----------------HHHHHHHh-hcCeEEE
Confidence 6779999999875332 223 4567899999999999999998763 34555654 4688887
Q ss_pred EecCC
Q 026473 105 CDLHS 109 (238)
Q Consensus 105 vdlHs 109 (238)
+..-.
T Consensus 180 ~~~P~ 184 (220)
T COG1926 180 LYMPA 184 (220)
T ss_pred EcCCc
Confidence 76543
No 173
>PRK08525 amidophosphoribosyltransferase; Provisional
Probab=36.83 E-value=78 Score=29.69 Aligned_cols=46 Identities=15% Similarity=0.143 Sum_probs=32.6
Q ss_pred CCcCCCcEEEEecCCCCCchhHHHHHHHHHHHHhcCCCeEEEEecccCcc
Q 026473 24 ESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVIPYFGYA 73 (238)
Q Consensus 24 ~~v~g~~v~ivqs~~~~~~~~l~ell~~~~a~~~~~a~~i~~viPY~~Ys 73 (238)
+.+.|++|+||...-. .-.. +.-++++||++||++|.+.+..=+.+
T Consensus 336 ~~v~gK~VlLVDDvit--TG~T--l~~a~~~Lr~aGA~~V~v~~~hp~~~ 381 (445)
T PRK08525 336 KVLEGKRIVVIDDSIV--RGTT--SKKIVSLLRAAGAKEIHLRIACPEIK 381 (445)
T ss_pred cccCCCeEEEEecccC--cHHH--HHHHHHHHHhcCCCEEEEEEECCCcC
Confidence 4588999999987532 2233 33578999999999999876554433
No 174
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=36.41 E-value=70 Score=28.04 Aligned_cols=35 Identities=17% Similarity=0.134 Sum_probs=29.5
Q ss_pred CCCCCEEEEEeCcccchHHHHHHHHHHHHCCCCEEEEEE
Q 026473 189 DVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACC 227 (238)
Q Consensus 189 ~v~gk~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~ 227 (238)
+++||+|+| +-+||+-.+++-.|.+.|+++|+++.
T Consensus 124 ~~~~k~vli----lGaGGaarAi~~aL~~~g~~~i~i~n 158 (283)
T PRK14027 124 NAKLDSVVQ----VGAGGVGNAVAYALVTHGVQKLQVAD 158 (283)
T ss_pred CcCCCeEEE----ECCcHHHHHHHHHHHHCCCCEEEEEc
Confidence 467888874 57899999999999999999998874
No 175
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=36.06 E-value=2.4e+02 Score=23.02 Aligned_cols=75 Identities=17% Similarity=0.275 Sum_probs=41.8
Q ss_pred CCchhHHHHHHHHHHhCCCE-EEEEecCChhccCccCccCccccccHHHHHHHHhccCCCCCeEEEEeCCCchHHHHHHH
Q 026473 82 RESIAAKLVANLITEAGADR-VLACDLHSGQSMGYFDIPVDHVYCQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFA 160 (238)
Q Consensus 82 ~~~~~~~~~a~ll~~~g~~~-vi~vdlHs~~~~~~f~~~~~~l~~~~~la~~i~~~~~~~~~~viv~pd~g~~~~a~~~a 160 (238)
+++.-++.+.+.+...+.+- +.+-+ . |...-.+...+.+.|.+. ..+++++|+-..||. .|..+|
T Consensus 12 p~S~Ka~~l~~~~~~~~~~~~~~~p~-----l------~~~p~~a~~~l~~~i~~~--~~~~~~liGSSlGG~-~A~~La 77 (187)
T PF05728_consen 12 PQSFKAQALKQYFAEHGPDIQYPCPD-----L------PPFPEEAIAQLEQLIEEL--KPENVVLIGSSLGGF-YATYLA 77 (187)
T ss_pred CCCHHHHHHHHHHHHhCCCceEECCC-----C------CcCHHHHHHHHHHHHHhC--CCCCeEEEEEChHHH-HHHHHH
Confidence 34455667778887766442 22211 1 111111223333444433 234579999999997 677888
Q ss_pred HHcCCCCEEEE
Q 026473 161 KKLSDAPLAIV 171 (238)
Q Consensus 161 ~~l~~~~~~~~ 171 (238)
.+.+ +|...+
T Consensus 78 ~~~~-~~avLi 87 (187)
T PF05728_consen 78 ERYG-LPAVLI 87 (187)
T ss_pred HHhC-CCEEEE
Confidence 8887 676444
No 176
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=35.81 E-value=68 Score=29.81 Aligned_cols=37 Identities=8% Similarity=0.084 Sum_probs=31.8
Q ss_pred ccCCCCCEEEEEeCcccchHHHHHHHHHHHHCCCCEEEEEE
Q 026473 187 IGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACC 227 (238)
Q Consensus 187 ~~~v~gk~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~ 227 (238)
.++++|++|+| +-+|+.-..+++.|.+.|+..|.++.
T Consensus 176 ~~~l~~kkvlv----iGaG~~a~~va~~L~~~g~~~I~V~n 212 (414)
T PRK13940 176 LDNISSKNVLI----IGAGQTGELLFRHVTALAPKQIMLAN 212 (414)
T ss_pred hcCccCCEEEE----EcCcHHHHHHHHHHHHcCCCEEEEEC
Confidence 35788999985 57899999999999999999988875
No 177
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=34.91 E-value=84 Score=27.57 Aligned_cols=35 Identities=29% Similarity=0.355 Sum_probs=29.1
Q ss_pred CCCCCEEEEEeCcccchHHHHHHHHHHHHCCCCEEEEEE
Q 026473 189 DVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACC 227 (238)
Q Consensus 189 ~v~gk~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~ 227 (238)
+++||+++|+ -+|++-.+++-.|.+.|+++|.++.
T Consensus 121 ~~~~k~vlvl----GaGGaarAi~~~l~~~g~~~i~i~n 155 (288)
T PRK12749 121 DIKGKTMVLL----GAGGASTAIGAQGAIEGLKEIKLFN 155 (288)
T ss_pred CcCCCEEEEE----CCcHHHHHHHHHHHHCCCCEEEEEe
Confidence 5788888865 6899988888888899999998875
No 178
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=34.60 E-value=1e+02 Score=26.97 Aligned_cols=35 Identities=26% Similarity=0.348 Sum_probs=28.5
Q ss_pred CCCCCEEEEEeCcccchHHHHHHHHHHHHCCCCEEEEEE
Q 026473 189 DVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACC 227 (238)
Q Consensus 189 ~v~gk~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~ 227 (238)
+++||+++|+ -+|++-.+++..|.+.|+++|.++.
T Consensus 123 ~~~~k~vlI~----GAGGagrAia~~La~~G~~~V~I~~ 157 (289)
T PRK12548 123 DVKGKKLTVI----GAGGAATAIQVQCALDGAKEITIFN 157 (289)
T ss_pred CcCCCEEEEE----CCcHHHHHHHHHHHHCCCCEEEEEe
Confidence 4678888865 5688888888899999999888765
No 179
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=34.38 E-value=74 Score=23.49 Aligned_cols=33 Identities=18% Similarity=0.272 Sum_probs=26.0
Q ss_pred CCCEEEEEeCcccchHHHHHHHHHHHHCCCCEEEEE
Q 026473 191 KGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYAC 226 (238)
Q Consensus 191 ~gk~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~ 226 (238)
+++.++++ |.+|.+...++..|++.|-..++.+
T Consensus 63 ~~~~ivv~---C~~G~rs~~aa~~L~~~G~~~v~~l 95 (117)
T cd01522 63 KDRPVLLL---CRSGNRSIAAAEAAAQAGFTNVYNV 95 (117)
T ss_pred CCCeEEEE---cCCCccHHHHHHHHHHCCCCeEEEC
Confidence 45677776 4688888899999999999887643
No 180
>PRK13812 orotate phosphoribosyltransferase; Provisional
Probab=34.30 E-value=1.6e+02 Score=23.73 Aligned_cols=58 Identities=16% Similarity=0.142 Sum_probs=32.8
Q ss_pred CCceeeeeeeeeCCCceEEEecCCc-CCCcEEEEecCCCCCchhHHHHHHHHHHHHhcCCCeEE
Q 026473 2 GVELGKINIKRFADGEIYVQLQESV-RGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNIT 64 (238)
Q Consensus 2 ~~~~~~~~~~~F~dGE~~v~i~~~v-~g~~v~ivqs~~~~~~~~l~ell~~~~a~~~~~a~~i~ 64 (238)
|+++.-..-.+-..|+... +...+ +|++|+||...-..- . -+.-++++++++|++-+.
T Consensus 81 ~~p~~~~rk~~k~yg~~~~-~~g~~~~g~~VlIVDDvitTG-~---Tl~~~~~~l~~~Ga~vv~ 139 (176)
T PRK13812 81 GVPYVIARKQAKEYGTGNR-IEGRLDEGEEVVVLEDIATTG-Q---SAVDAVEALREAGATVNR 139 (176)
T ss_pred CCCEEEEeccCCcCCCCCe-EEecCCCcCEEEEEEEeeCCC-H---HHHHHHHHHHHCCCeEEE
Confidence 4444433333333354332 22344 899999998764322 2 256677888899976443
No 181
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=33.70 E-value=56 Score=25.77 Aligned_cols=29 Identities=17% Similarity=0.449 Sum_probs=24.0
Q ss_pred CcccchHHHHHHHHHHHHCCCCEEEEEEE
Q 026473 200 DMIDTAGTIAKGAALLHQEGAREVYACCT 228 (238)
Q Consensus 200 Dii~TG~Tl~~a~~~Lk~~Ga~~V~~~~t 228 (238)
|...+..-+..+.+.|+.+|++.|+.+.+
T Consensus 100 Dl~~~~~~i~~a~~~L~~aG~~~if~vS~ 128 (143)
T PF10662_consen 100 DLPSDDANIERAKKWLKNAGVKEIFEVSA 128 (143)
T ss_pred cCccchhhHHHHHHHHHHcCCCCeEEEEC
Confidence 55556788999999999999999976664
No 182
>PF14502 HTH_41: Helix-turn-helix domain
Probab=33.64 E-value=46 Score=21.19 Aligned_cols=21 Identities=29% Similarity=0.468 Sum_probs=17.7
Q ss_pred chHHHHHHHHHHHHCCCCEEE
Q 026473 204 TAGTIAKGAALLHQEGAREVY 224 (238)
Q Consensus 204 TG~Tl~~a~~~Lk~~Ga~~V~ 224 (238)
+=+|+..|.+.|++.||-++.
T Consensus 19 s~GtiQ~Alk~Le~~gaI~Le 39 (48)
T PF14502_consen 19 SRGTIQNALKFLEENGAIKLE 39 (48)
T ss_pred chhHHHHHHHHHHHCCcEEee
Confidence 568999999999999986553
No 183
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=33.23 E-value=53 Score=28.40 Aligned_cols=38 Identities=11% Similarity=0.179 Sum_probs=30.1
Q ss_pred CEEEEEeCcccchHH--HHHHHHHHHHC-CCCEEEEEEEcc
Q 026473 193 KVAVMVDDMIDTAGT--IAKGAALLHQE-GAREVYACCTHA 230 (238)
Q Consensus 193 k~vlIVDDii~TG~T--l~~a~~~Lk~~-Ga~~V~~~~tH~ 230 (238)
-+++|+|-+++.|-. ..+|.+.+.+. .-....++++|-
T Consensus 166 pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd 206 (249)
T COG1134 166 PDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHD 206 (249)
T ss_pred CCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECC
Confidence 489999999999976 67788777665 444788889994
No 184
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=33.05 E-value=46 Score=28.30 Aligned_cols=26 Identities=19% Similarity=0.153 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHCCCCEEEEEEEccc
Q 026473 206 GTIAKGAALLHQEGAREVYACCTHAV 231 (238)
Q Consensus 206 ~Tl~~a~~~Lk~~Ga~~V~~~~tH~~ 231 (238)
-++..|+.+|++.|+.+|..+-.+|+
T Consensus 135 V~vetAiaml~dmG~~SiKffPM~Gl 160 (236)
T TIGR03581 135 VPIETAIAMLKDMGGSSVKFFPMGGL 160 (236)
T ss_pred eeHHHHHHHHHHcCCCeeeEeecCCc
Confidence 67889999999999999999988875
No 185
>PRK02277 orotate phosphoribosyltransferase-like protein; Provisional
Probab=33.04 E-value=1.6e+02 Score=24.27 Aligned_cols=40 Identities=18% Similarity=0.262 Sum_probs=27.8
Q ss_pred CCcCCCcEEEEecCCCCCchhHHHHHHHHHHHHhcCCCeEEEEe
Q 026473 24 ESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVI 67 (238)
Q Consensus 24 ~~v~g~~v~ivqs~~~~~~~~l~ell~~~~a~~~~~a~~i~~vi 67 (238)
..++|++|+||...... -.. +.-.++.++++|++.+.++.
T Consensus 136 ~~~~gk~VlIVDDVitT-G~T---l~~ai~~l~~~Ga~~v~v~v 175 (200)
T PRK02277 136 ASVEGKRCVIVDDVITS-GTT---MKETIEYLKEHGGKPVAVVV 175 (200)
T ss_pred ccCCcCEEEEEeeccCc-hHH---HHHHHHHHHHcCCEEEEEEE
Confidence 35789999999876432 223 44556788899998776544
No 186
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=32.89 E-value=61 Score=23.37 Aligned_cols=30 Identities=20% Similarity=0.234 Sum_probs=22.1
Q ss_pred CCEEEEEeCcccchHHHHHHHHHHHHCCCCEEE
Q 026473 192 GKVAVMVDDMIDTAGTIAKGAALLHQEGAREVY 224 (238)
Q Consensus 192 gk~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~ 224 (238)
++.++++ |.+|.+...++..|++.|...|+
T Consensus 58 ~~~ivv~---c~~g~~s~~a~~~L~~~G~~~v~ 87 (108)
T PRK00162 58 DTPVMVM---CYHGNSSQGAAQYLLQQGFDVVY 87 (108)
T ss_pred CCCEEEE---eCCCCCHHHHHHHHHHCCchheE
Confidence 4455555 45677777888899999998776
No 187
>PF02875 Mur_ligase_C: Mur ligase family, glutamate ligase domain This Prosite entry is a subset of the Pfam family.; InterPro: IPR004101 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes the C-terminal domain of folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) []. The C-terminal domain is almost always associated with the cytoplasmic peptidoglycan synthetases, N-terminal domain (see IPR000713 from INTERPRO).; GO: 0005524 ATP binding, 0016874 ligase activity, 0009058 biosynthetic process; PDB: 2Y68_A 3UAG_A 4UAG_A 2UAG_A 1E0D_A 2XPC_A 2WJP_A 2VTE_A 2Y67_A 1EEH_A ....
Probab=32.85 E-value=77 Score=22.16 Aligned_cols=34 Identities=15% Similarity=0.139 Sum_probs=22.9
Q ss_pred EEEEEeCcccchHHHHHHHHHHHHC-CCCEEEEEE
Q 026473 194 VAVMVDDMIDTAGTIAKGAALLHQE-GAREVYACC 227 (238)
Q Consensus 194 ~vlIVDDii~TG~Tl~~a~~~Lk~~-Ga~~V~~~~ 227 (238)
.+.+++|.-.+=..+.++.+.|++. +.+++.++.
T Consensus 13 ~~~vi~D~ahNp~s~~a~l~~l~~~~~~~~~i~V~ 47 (91)
T PF02875_consen 13 GPTVIDDYAHNPDSIRALLEALKELYPKGRIIAVF 47 (91)
T ss_dssp TEEEEEET--SHHHHHHHHHHHHHHCTTSEEEEEE
T ss_pred CcEEEEECCCCHHHHHHHHHHHHHhccCCcEEEEE
Confidence 4566666888888899999999886 445555444
No 188
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=32.78 E-value=99 Score=21.25 Aligned_cols=29 Identities=14% Similarity=0.261 Sum_probs=20.7
Q ss_pred CchhHHHHHHHHHHHHhcCCCeEEEEecc
Q 026473 41 ANENLMELLIMIDACRRASAKNITAVIPY 69 (238)
Q Consensus 41 ~~~~l~ell~~~~a~~~~~a~~i~~viPY 69 (238)
.++.+-++.-.++.+...+....+++.||
T Consensus 23 ~~~tl~~v~~~v~~~~~~~~~~f~L~t~~ 51 (80)
T smart00166 23 SSDTLRTVYEFVSAALTDGNDPFTLNSPF 51 (80)
T ss_pred CCCcHHHHHHHHHHcccCCCCCEEEEeCC
Confidence 46778888888877766666677777664
No 189
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=32.75 E-value=45 Score=27.12 Aligned_cols=23 Identities=26% Similarity=0.234 Sum_probs=14.7
Q ss_pred EEEEEeCcccchHHHHHHH-HHHH
Q 026473 194 VAVMVDDMIDTAGTIAKGA-ALLH 216 (238)
Q Consensus 194 ~vlIVDDii~TG~Tl~~a~-~~Lk 216 (238)
.=+||||++.++..+.... +.|.
T Consensus 84 ~~VIvD~v~~~~~~l~d~l~~~L~ 107 (174)
T PF07931_consen 84 NNVIVDDVFLGPRWLQDCLRRLLA 107 (174)
T ss_dssp -EEEEEE--TTTHHHHHHHHHHHT
T ss_pred CCEEEecCccCcHHHHHHHHHHhC
Confidence 4467899999998877776 5554
No 190
>TIGR00336 pyrE orotate phosphoribosyltransferase. The conserved Lys (K) residue at position 101 of the seed alignment has been proposed as the active site for the enzyme.
Probab=32.39 E-value=1.5e+02 Score=23.67 Aligned_cols=51 Identities=20% Similarity=0.195 Sum_probs=31.4
Q ss_pred CceEEEecCCcCCCcEEEEecCCCCCchhHHHHHHHHHHHHhcCCCeEEEEecccC
Q 026473 16 GEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVIPYFG 71 (238)
Q Consensus 16 GE~~v~i~~~v~g~~v~ivqs~~~~~~~~l~ell~~~~a~~~~~a~~i~~viPY~~ 71 (238)
|+......+..+|+.|+||......- . -+.-.++.++++|++ +..++-.+.
T Consensus 96 g~~~~~~g~~~~g~~VlIVDDvi~TG-~---Tl~~a~~~l~~~Ga~-v~~~~vlvd 146 (173)
T TIGR00336 96 GEGGNIEGELLEGDKVVVVEDVITTG-T---SILEAVEIIQAAGGQ-VAGVIIAVD 146 (173)
T ss_pred CCCCceecCCCCCCEEEEEeccccCh-H---HHHHHHHHHHHcCCe-EEEEEEEEe
Confidence 54443333445899999998865321 2 255667889999974 444444443
No 191
>KOG1643 consensus Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=31.97 E-value=17 Score=30.62 Aligned_cols=45 Identities=22% Similarity=0.432 Sum_probs=32.8
Q ss_pred ecccCcccccc-----------ccCCCCchhHHHHHHHHHHhCCCEEEEEecCChhcc
Q 026473 67 IPYFGYARADR-----------KTQGRESIAAKLVANLITEAGADRVLACDLHSGQSM 113 (238)
Q Consensus 67 iPY~~YsRqdr-----------~~~~~~~~~~~~~a~ll~~~g~~~vi~vdlHs~~~~ 113 (238)
.||+.|+||-- -..++.+++...=+.||..+|++.+|. =||++..
T Consensus 44 ~~Yl~~ak~~l~~~i~v~aQn~~~~k~GafTGEiS~~mlkd~G~~wVIl--GHSERR~ 99 (247)
T KOG1643|consen 44 APYLDYAKSKLKPDIGVAAQNCYKVKSGAFTGEISAEMLKDLGAEWVIL--GHSERRH 99 (247)
T ss_pred hhHHHHHHHhCCccceeecceeeeccCccccCccCHHHHHhCCCCEEEe--cchhhhh
Confidence 57888888731 122445788888899999999999886 4776653
No 192
>PRK04194 hypothetical protein; Provisional
Probab=31.84 E-value=4.2e+02 Score=24.54 Aligned_cols=124 Identities=21% Similarity=0.305 Sum_probs=68.4
Q ss_pred HHHHhCCCEEEEEecCChh--c---cCccCccCccccccHHHHHHHHhcc-CCCC-CeEEEEeCCCchHHHHHHHHHcCC
Q 026473 93 LITEAGADRVLACDLHSGQ--S---MGYFDIPVDHVYCQPVILDYLASKT-VSSN-DLVVVSPDVGGVARARAFAKKLSD 165 (238)
Q Consensus 93 ll~~~g~~~vi~vdlHs~~--~---~~~f~~~~~~l~~~~~la~~i~~~~-~~~~-~~viv~pd~g~~~~a~~~a~~l~~ 165 (238)
.|...|+++|+.-+++.+. + .|.+++| .|..++-++... ...+ +-=.+ -+-|....+.+++.++.
T Consensus 137 ~l~~L~~~~i~~sp~~~G~G~V~~aHG~lPVP------aPAt~eil~~~~~~~~~~~~EL~--TPTGAAil~~l~~~f~~ 208 (392)
T PRK04194 137 ALDYLGVDKVYCSPLPLGGGFVKTAHGILPVP------APATLELLKGIPVYGGDVEGELT--TPTGAAILAALADEFGP 208 (392)
T ss_pred HHHHcCCCeEEEcCCccCCeEEEeccCCCCCC------HHHHHHHHcCCCccCCCCCcccc--ChHHHHHHHHHHhhcCC
Confidence 3566799999998888643 2 2555554 555555443221 0001 00011 23344556677777753
Q ss_pred CCEEEEEEEeCC--------CCcEEEEE--eccCCCCCEEEE----EeCcccchHHHHHHHHHHHHCCCCEEEEE
Q 026473 166 APLAIVDKRRHG--------HNVAEVMN--LIGDVKGKVAVM----VDDMIDTAGTIAKGAALLHQEGAREVYAC 226 (238)
Q Consensus 166 ~~~~~~~k~r~~--------~~~~~~~~--~~~~v~gk~vlI----VDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~ 226 (238)
.|...+.+.-.+ .|..+..- ........+|.+ |||+ ||.-+..+.+.|.++||..|++.
T Consensus 209 ~p~~~~~~iGyGaG~rd~~~pNvLR~~l~~~~~~~~~d~v~vlEtniDD~--t~E~lg~~~e~L~~~GAlDV~~t 281 (392)
T PRK04194 209 PPSMTIEKVGYGAGTRDLPIPNVLRLVLGEAEEGPEREEVVVLETNIDDL--SPEVLGYLFERLLEAGALDVFIT 281 (392)
T ss_pred CCCeeEEEEEEecCCCCCCCCcEEEEEecccCCCCCCceEEEEEecCcCC--CHHHHHHHHHHHHHCCCceeeec
Confidence 454444444322 12222221 111223345555 4665 89999999999999999988754
No 193
>PRK05793 amidophosphoribosyltransferase; Provisional
Probab=30.93 E-value=93 Score=29.43 Aligned_cols=44 Identities=18% Similarity=0.183 Sum_probs=31.5
Q ss_pred CCcCCCcEEEEecCCCCCchhHHHHHHHHHHHHhcCCCeEEEEecccC
Q 026473 24 ESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVIPYFG 71 (238)
Q Consensus 24 ~~v~g~~v~ivqs~~~~~~~~l~ell~~~~a~~~~~a~~i~~viPY~~ 71 (238)
..++|++|++|...-- .-.. +.-++.+||++||++|.+.+.-=|
T Consensus 349 ~~v~gk~VlLVDD~It--TGtT--l~~~~~~Lr~aGAk~V~~~~~~p~ 392 (469)
T PRK05793 349 VNVEGKRVVLIDDSIV--RGTT--SKRLVELLRKAGAKEVHFRVSSPP 392 (469)
T ss_pred cccCCCEEEEEccccC--chHH--HHHHHHHHHHcCCCEEEEEEECCC
Confidence 4678999999976432 2233 334889999999999998765433
No 194
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=30.84 E-value=1.8e+02 Score=22.93 Aligned_cols=67 Identities=19% Similarity=0.193 Sum_probs=40.7
Q ss_pred HHHHHHhCCCEEEEEecCChhccCccCccCccccccHHHHHHHHhccCCCCCeEEEEeCCCchHHHHHHHHHcCCCCE
Q 026473 91 ANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPL 168 (238)
Q Consensus 91 a~ll~~~g~~~vi~vdlHs~~~~~~f~~~~~~l~~~~~la~~i~~~~~~~~~~viv~pd~g~~~~a~~~a~~l~~~~~ 168 (238)
++-+..+|+|+++.++-. .... |+ .......+++.+.+. .-+.++++-..-|-.++..+|.+|+ .++
T Consensus 44 ~~~~~~~Gad~v~~~~~~--~~~~-~~----~~~~a~al~~~i~~~---~p~~Vl~~~t~~g~~la~rlAa~L~-~~~ 110 (168)
T cd01715 44 AAALKAYGADKVLVAEDP--ALAH-YL----AEPYAPALVALAKKE---KPSHILAGATSFGKDLAPRVAAKLD-VGL 110 (168)
T ss_pred HHHHHhcCCCEEEEecCh--hhcc-cC----hHHHHHHHHHHHHhc---CCCEEEECCCccccchHHHHHHHhC-CCc
Confidence 333446899999997621 2211 22 111244555555543 1345666667778899999999998 665
No 195
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=30.54 E-value=85 Score=29.32 Aligned_cols=41 Identities=17% Similarity=0.197 Sum_probs=34.8
Q ss_pred cCCCCCEEEEEeCcccchHHHHHHHHHHHHCCCCEEEEEEEccccc
Q 026473 188 GDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHAVFR 233 (238)
Q Consensus 188 ~~v~gk~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~~fs 233 (238)
.+.+||+|++| -+|.|-...+..|.+.| ++|..++-++.+.
T Consensus 171 ~~~~GKrV~VI----G~GaSA~di~~~l~~~g-a~vt~~qRs~~~~ 211 (443)
T COG2072 171 EDLRGKRVLVI----GAGASAVDIAPELAEVG-ASVTLSQRSPPHI 211 (443)
T ss_pred cccCCCeEEEE----CCCccHHHHHHHHHhcC-CeeEEEecCCCce
Confidence 36899999975 79999999999999998 8899998776543
No 196
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=30.35 E-value=64 Score=24.55 Aligned_cols=28 Identities=25% Similarity=0.220 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHCCCCEEEEEEEcccccC
Q 026473 206 GTIAKGAALLHQEGAREVYACCTHAVFRL 234 (238)
Q Consensus 206 ~Tl~~a~~~Lk~~Ga~~V~~~~tH~~fs~ 234 (238)
-|+.++.+.|.+.|.+.|.+.-+| +|.|
T Consensus 56 p~~~eaL~~l~~~G~~~V~V~Pl~-l~~G 83 (127)
T cd03412 56 DTPEEALAKLAADGYTEVIVQSLH-IIPG 83 (127)
T ss_pred CCHHHHHHHHHHCCCCEEEEEeCe-eECc
Confidence 367888889999999999988887 5544
No 197
>PRK14453 chloramphenicol/florfenicol resistance protein; Provisional
Probab=30.16 E-value=3.3e+02 Score=24.63 Aligned_cols=61 Identities=16% Similarity=0.185 Sum_probs=32.3
Q ss_pred CCCchhHHHHHHHHHHHHhcC----CCeEEEEecccCccccccccCCCCchhHHHHHHHHHHhCCC
Q 026473 39 PPANENLMELLIMIDACRRAS----AKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGAD 100 (238)
Q Consensus 39 ~~~~~~l~ell~~~~a~~~~~----a~~i~~viPY~~YsRqdr~~~~~~~~~~~~~a~ll~~~g~~ 100 (238)
+.+||+.=+.--+++-++..+ ..+| -+|||.|+......+.+-+.=....+.++|...|+.
T Consensus 257 ~GvNDs~e~a~~L~~~lk~l~~~~~~~~V-nLIPyn~~~~~~~~~~~ps~e~v~~f~~~L~~~Gi~ 321 (347)
T PRK14453 257 EGVNDSKEHAEAVVGLLRNRGSWEHLYHV-NLIPYNSTDKTPFKFQSSSAGQIKQFCSTLKSAGIS 321 (347)
T ss_pred CCCCCCHHHHHHHHHHHhhccccCCcceE-EEecCCCCCCCCccCCCCCHHHHHHHHHHHHHCCCc
Confidence 345666666666666666542 2333 478888876532112222112334566677777754
No 198
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753).
Probab=30.04 E-value=72 Score=27.14 Aligned_cols=33 Identities=21% Similarity=0.116 Sum_probs=24.8
Q ss_pred CEEEEEeCcccchHHHHHHHHHHHHCCCCEEEEEEEcc
Q 026473 193 KVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHA 230 (238)
Q Consensus 193 k~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~ 230 (238)
+.+++||- |.. ....+.|++.|.+--++++||.
T Consensus 20 ~~~ilID~----g~~-~~i~~~l~~~g~~l~~Il~TH~ 52 (248)
T TIGR03413 20 GQAAVVDP----GEA-EPVLDALEARGLTLTAILLTHH 52 (248)
T ss_pred CCEEEEcC----CCh-HHHHHHHHHcCCeeeEEEeCCC
Confidence 47888883 432 4567788888887778999996
No 199
>PRK11194 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=29.89 E-value=2.8e+02 Score=25.38 Aligned_cols=68 Identities=12% Similarity=0.119 Sum_probs=33.3
Q ss_pred CcEEEEecCCCCCchhHHHHHHHHHHHHhcCCCeEEEEecccCccccccccCCCCchhHHHHHHHHHHhCCC
Q 026473 29 CDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGAD 100 (238)
Q Consensus 29 ~~v~ivqs~~~~~~~~l~ell~~~~a~~~~~a~~i~~viPY~~YsRqdr~~~~~~~~~~~~~a~ll~~~g~~ 100 (238)
+.|.|=..+-+.+||+.=+.-.+++-++..+. +| =+|||-||...+ +.+-+.=....+.+.|...|+.
T Consensus 261 rrI~irypLIpGvNDs~e~a~~La~ll~~l~~-~V-nLIPYN~~~~~~--~~~ps~e~v~~f~~~L~~~Gi~ 328 (372)
T PRK11194 261 GRVTVEYVMLDHVNDGTEHAHQLAELLKDTPC-KI-NLIPWNPFPGAP--YGRSSNSRIDRFSKVLMEYGFT 328 (372)
T ss_pred CeEEEEEEeECCCCCCHHHHHHHHHHHhcCCc-eE-EEecCCCCCCCC--CCCCCHHHHHHHHHHHHHCCCe
Confidence 34443333333455555555555555555432 44 477888877432 2111112234456666666653
No 200
>PRK02122 glucosamine-6-phosphate deaminase-like protein; Validated
Probab=29.89 E-value=78 Score=31.31 Aligned_cols=38 Identities=26% Similarity=0.309 Sum_probs=30.6
Q ss_pred CCCCEEEEE-----eCcccchHHHHHHHHHHHHCCCCEEEEEEEccc
Q 026473 190 VKGKVAVMV-----DDMIDTAGTIAKGAALLHQEGAREVYACCTHAV 231 (238)
Q Consensus 190 v~gk~vlIV-----DDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~~ 231 (238)
...++||+| ||++.-|||+.+ |.++|.....++.|-|-
T Consensus 367 ~~~~rvLv~spHPDDevi~~GGTlar----l~~~G~~V~vv~~TsG~ 409 (652)
T PRK02122 367 PYPKRVIIFSPHPDDDVISMGGTFRR----LVEQGHDVHVAYQTSGN 409 (652)
T ss_pred cCCceEEEEEeCCCchHhhhHHHHHH----HHHCCCcEEEEEecCCc
Confidence 346888888 889999999965 45689888888888875
No 201
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=29.61 E-value=2.8e+02 Score=22.82 Aligned_cols=68 Identities=15% Similarity=0.088 Sum_probs=38.6
Q ss_pred HHHHHHHhCCCEEEEEecCChhccCccCccCccccccHHHHHHHHhccCCCCCeEEEEeCC---CchHHHHHHHHHcCCC
Q 026473 90 VANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLASKTVSSNDLVVVSPDV---GGVARARAFAKKLSDA 166 (238)
Q Consensus 90 ~a~ll~~~g~~~vi~vdlHs~~~~~~f~~~~~~l~~~~~la~~i~~~~~~~~~~viv~pd~---g~~~~a~~~a~~l~~~ 166 (238)
.++.+...|+++|+.++-.. . ..|+. ......+++.+.+.. -+.++++-.. +|-.++..+|.+|+ .
T Consensus 68 ~~~~l~~~G~d~V~~~~~~~--~-~~~~~----e~~a~al~~~i~~~~---p~lVL~~~t~~~~~grdlaprlAarLg-a 136 (202)
T cd01714 68 ALREALAMGADRAILVSDRA--F-AGADT----LATAKALAAAIKKIG---VDLILTGKQSIDGDTGQVGPLLAELLG-W 136 (202)
T ss_pred HHHHHHHcCCCEEEEEeccc--c-cCCCh----HHHHHHHHHHHHHhC---CCEEEEcCCcccCCcCcHHHHHHHHhC-C
Confidence 34444567999999976432 1 11220 111344555554431 2344444333 38889999999998 6
Q ss_pred CE
Q 026473 167 PL 168 (238)
Q Consensus 167 ~~ 168 (238)
++
T Consensus 137 ~l 138 (202)
T cd01714 137 PQ 138 (202)
T ss_pred Cc
Confidence 65
No 202
>PRK10241 hydroxyacylglutathione hydrolase; Provisional
Probab=29.31 E-value=61 Score=27.68 Aligned_cols=33 Identities=12% Similarity=0.046 Sum_probs=24.2
Q ss_pred CEEEEEeCcccchHHHHHHHHHHHHCCCCEEEEEEEcc
Q 026473 193 KVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHA 230 (238)
Q Consensus 193 k~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~ 230 (238)
+.+++||. |. -....+.|++.|.+--.+++||+
T Consensus 22 ~~~ilIDp----g~-~~~vl~~l~~~g~~l~~IllTH~ 54 (251)
T PRK10241 22 GRCLIVDP----GE-AEPVLNAIAENNWQPEAIFLTHH 54 (251)
T ss_pred CcEEEECC----CC-hHHHHHHHHHcCCccCEEEeCCC
Confidence 46788884 43 35667788888877678999996
No 203
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=28.78 E-value=87 Score=24.91 Aligned_cols=37 Identities=27% Similarity=0.307 Sum_probs=28.7
Q ss_pred CCCCCEEEEEeCcccchHHHHHHHHHHHHCCCCEEEEEEEcc
Q 026473 189 DVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHA 230 (238)
Q Consensus 189 ~v~gk~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~ 230 (238)
+.+||+|+|| -+|.|-..++..|.+.| ++|.++.-++
T Consensus 164 ~~~~k~V~VV----G~G~SA~d~a~~l~~~g-~~V~~~~R~~ 200 (203)
T PF13738_consen 164 DFKGKRVVVV----GGGNSAVDIAYALAKAG-KSVTLVTRSP 200 (203)
T ss_dssp GCTTSEEEEE------SHHHHHHHHHHTTTC-SEEEEEESS-
T ss_pred hcCCCcEEEE----cChHHHHHHHHHHHhhC-CEEEEEecCC
Confidence 5789999965 68999999999999888 8898876543
No 204
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=28.66 E-value=1.5e+02 Score=26.36 Aligned_cols=43 Identities=19% Similarity=0.152 Sum_probs=35.0
Q ss_pred eccCCCCCEEEEEeCcccchHHHHHHHHHHHHCCCCEEEEEEE
Q 026473 186 LIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCT 228 (238)
Q Consensus 186 ~~~~v~gk~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~t 228 (238)
+.+.++||+|+||--==..........+.|+++||.....+..
T Consensus 77 v~g~L~g~~V~vV~~p~a~~~~~~~v~~~L~~AGA~v~g~i~l 119 (308)
T PF11382_consen 77 VAGRLTGRSVAVVTLPGADDEDVDAVRELLEQAGATVTGRITL 119 (308)
T ss_pred hcCccCCCEEEEEEcCCCChHHHHHHHHHHHHCCCeEEEEEEE
Confidence 4567899999999965567888999999999999997655543
No 205
>PLN02293 adenine phosphoribosyltransferase
Probab=28.51 E-value=3.1e+02 Score=22.37 Aligned_cols=38 Identities=18% Similarity=0.239 Sum_probs=25.9
Q ss_pred Cc-CCCcEEEEecCCCCCchhHHHHHHHHHHHHhcCCCeEEEE
Q 026473 25 SV-RGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAV 66 (238)
Q Consensus 25 ~v-~g~~v~ivqs~~~~~~~~l~ell~~~~a~~~~~a~~i~~v 66 (238)
.+ +|++|+||...-..- . -+.-+++.++++|++.+.++
T Consensus 121 ~i~~G~rVlIVDDvitTG-~---T~~~~~~~l~~~Ga~~v~~~ 159 (187)
T PLN02293 121 AVEPGERALVIDDLIATG-G---TLCAAINLLERAGAEVVECA 159 (187)
T ss_pred ccCCCCEEEEEeccccch-H---HHHHHHHHHHHCCCEEEEEE
Confidence 45 799999998764321 2 25556689999999755433
No 206
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=28.21 E-value=3.1e+02 Score=24.81 Aligned_cols=59 Identities=10% Similarity=0.142 Sum_probs=31.2
Q ss_pred CchhHHHHHHHHHHHHhcCCCeEEEEecccCccccccccCCCCchhHHHHHHHHHHhCCCEEE
Q 026473 41 ANENLMELLIMIDACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVL 103 (238)
Q Consensus 41 ~~~~l~ell~~~~a~~~~~a~~i~~viPY~~YsRqdr~~~~~~~~~~~~~a~ll~~~g~~~vi 103 (238)
+||+.=++--+++-++.... +|.+ |||-|+...+ +++-..=..+.+.+.|...|+.-.+
T Consensus 261 vNDs~e~~~~L~~ll~~l~~-~vnl-IPyn~~~~~~--~~~ps~e~i~~f~~~L~~~gi~v~v 319 (349)
T PRK14463 261 LNDSLEDAKRLVRLLSDIPS-KVNL-IPFNEHEGCD--FRSPTQEAIDRFHKYLLDKHVTVIT 319 (349)
T ss_pred CCCCHHHHHHHHHHHhccCc-eEEE-EecCCCCCCC--CCCCCHHHHHHHHHHHHHCCceEEE
Confidence 45555555556666665543 5554 8888876432 2222222334456667666754433
No 207
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=28.21 E-value=3.2e+02 Score=24.90 Aligned_cols=31 Identities=13% Similarity=0.176 Sum_probs=14.4
Q ss_pred CchhHHHHHHHHHHHHhcCCCeEEEEecccCcc
Q 026473 41 ANENLMELLIMIDACRRASAKNITAVIPYFGYA 73 (238)
Q Consensus 41 ~~~~l~ell~~~~a~~~~~a~~i~~viPY~~Ys 73 (238)
+||+.=++-.+++-++.... +| -+|||-||.
T Consensus 274 vNDs~e~a~~La~llk~l~~-~V-nLIPyn~~~ 304 (356)
T PRK14462 274 VNDDLKSAKKLVKLLNGIKA-KV-NLILFNPHE 304 (356)
T ss_pred CCCCHHHHHHHHHHHhhcCc-EE-EEEeCCCCC
Confidence 44444444444444444332 33 255666554
No 208
>TIGR01697 PNPH-PUNA-XAPA inosine guanosine and xanthosine phosphorylase family. Sequences from Clostridium and Thermotoga fall between these last two clades and are uncharacterized with respect to substrate range and operon.
Probab=28.06 E-value=1.1e+02 Score=26.01 Aligned_cols=51 Identities=16% Similarity=0.230 Sum_probs=36.4
Q ss_pred ccCCCCCEEEEEeCcc----c-chHHHHHHHHHHHHCCCCEEEEEEEcccccCCCC
Q 026473 187 IGDVKGKVAVMVDDMI----D-TAGTIAKGAALLHQEGAREVYACCTHAVFRLDYK 237 (238)
Q Consensus 187 ~~~v~gk~vlIVDDii----~-TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~~fs~~~~ 237 (238)
.|.++|+.|+++-=-+ - .-..+....++|++.|++.|....+=|-+.++++
T Consensus 45 ~G~~~g~~Vv~~~~gih~~~Gk~~~a~~~~~~~l~~~Gv~~II~~GsaGsl~~~l~ 100 (248)
T TIGR01697 45 FGRLGGKPVVCMQGRFHYYEGYDMATVTFPVRVMKLLGVEILVVTNAAGGLNPDFK 100 (248)
T ss_pred EEEECCEEEEEEcCCCcccCCCCHHHHHHHHHHHHHcCCCEEEEecccccCCCCCC
Confidence 4567899999887211 0 1123555578999999999999888888777654
No 209
>PRK13374 purine nucleoside phosphorylase; Provisional
Probab=27.88 E-value=3.7e+02 Score=22.62 Aligned_cols=84 Identities=19% Similarity=0.244 Sum_probs=53.5
Q ss_pred CeEEEEeCCCchHHHHHHHH-HcCCCCEEEEEEEeCCCCcEEEEEeccCCCCCEEEEEeCcccchHHHHHHHHHHHHCCC
Q 026473 142 DLVVVSPDVGGVARARAFAK-KLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGA 220 (238)
Q Consensus 142 ~~viv~pd~g~~~~a~~~a~-~l~~~~~~~~~k~r~~~~~~~~~~~~~~v~gk~vlIVDDii~TG~Tl~~a~~~Lk~~Ga 220 (238)
+.+++ .|--.|++.+|+ .++... .+...| . ..-..|..+|++|.++-=-+-.-++-..+.+++.+.|+
T Consensus 15 ~~vi~---~Gdp~R~~~~a~~~~~~~~--~~~~~~----~--~~~~~G~~~g~~v~v~~~GiG~~~Aai~~~eLi~~~g~ 83 (233)
T PRK13374 15 ETVLM---PGDPLRAKYIAETYLEDVV--QVTDVR----N--MFGFTGTYKGKKVSVMGHGMGIPSMVIYVHELIATFGV 83 (233)
T ss_pred CeEEe---cCCHHHHHHHHHHHhcCce--eeeccc----c--eEEEEEEECCEEEEEEeCCCCHhHHHHHHHHHHHHcCC
Confidence 34554 556667888885 565222 222222 1 12234677999999987777655555555666667899
Q ss_pred CEEEEEEEcccccCCC
Q 026473 221 REVYACCTHAVFRLDY 236 (238)
Q Consensus 221 ~~V~~~~tH~~fs~~~ 236 (238)
+.+.-+-|=|-+.++.
T Consensus 84 ~~iI~~GtaG~l~~~l 99 (233)
T PRK13374 84 KNIIRVGSCGATQDDV 99 (233)
T ss_pred cEEEEEeccccCCCCC
Confidence 9988888877776654
No 210
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=27.86 E-value=1.2e+02 Score=24.12 Aligned_cols=33 Identities=18% Similarity=-0.004 Sum_probs=26.0
Q ss_pred CCCEEEEEeCcccchH-HHHHHHHHHHHCCCCEEEEE
Q 026473 191 KGKVAVMVDDMIDTAG-TIAKGAALLHQEGAREVYAC 226 (238)
Q Consensus 191 ~gk~vlIVDDii~TG~-Tl~~a~~~Lk~~Ga~~V~~~ 226 (238)
+++.|++++. +|. .-..++..|++.|-+.|+.+
T Consensus 115 ~d~~IVvYC~---~G~~~S~~aa~~L~~~G~~~V~~l 148 (162)
T TIGR03865 115 KDRPLVFYCL---ADCWMSWNAAKRALAYGYSNVYWY 148 (162)
T ss_pred CCCEEEEEEC---CCCHHHHHHHHHHHhcCCcceEEe
Confidence 6789999965 675 46668889999999988754
No 211
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=27.77 E-value=72 Score=28.40 Aligned_cols=27 Identities=26% Similarity=0.331 Sum_probs=22.0
Q ss_pred ccchHHHHHHHHHHHHCCCCEEEEEEEc
Q 026473 202 IDTAGTIAKGAALLHQEGAREVYACCTH 229 (238)
Q Consensus 202 i~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH 229 (238)
+.||+|+.-+++.||+..++ +.+++.-
T Consensus 177 vGTGGTitGvar~Lk~~~p~-i~iv~vd 203 (300)
T COG0031 177 VGTGGTITGVARYLKERNPN-VRIVAVD 203 (300)
T ss_pred CCcchhHHHHHHHHHhhCCC-cEEEEEC
Confidence 56999999999999999886 5555543
No 212
>PRK11595 DNA utilization protein GntX; Provisional
Probab=27.51 E-value=1.2e+02 Score=25.47 Aligned_cols=41 Identities=15% Similarity=0.177 Sum_probs=29.1
Q ss_pred ecCCcCCCcEEEEecCCCCCchhHHHHHHHHHHHHhcCCCeEEEE
Q 026473 22 LQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAV 66 (238)
Q Consensus 22 i~~~v~g~~v~ivqs~~~~~~~~l~ell~~~~a~~~~~a~~i~~v 66 (238)
+..++.|++|+||...... -.. +.-.+++|+++|+++|.++
T Consensus 181 ~~~~~~~~~vllvDDv~tT--G~T--l~~~~~~L~~~g~~~V~~~ 221 (227)
T PRK11595 181 LELPVQGQHMAIVDDVVTT--GST--VAEIAQLLLRNGAASVQVW 221 (227)
T ss_pred cCCCCCCCEEEEEeeeecc--hHH--HHHHHHHHHHcCCcEEEEE
Confidence 3456789999999875432 222 4557788999999998764
No 213
>COG0035 Upp Uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=27.44 E-value=81 Score=26.56 Aligned_cols=46 Identities=24% Similarity=0.378 Sum_probs=33.8
Q ss_pred ceEEEecCCcCCCcEEEEecCCCCCchhHHHHHHHHHHHHhc-CCCeEEEE
Q 026473 17 EIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRA-SAKNITAV 66 (238)
Q Consensus 17 E~~v~i~~~v~g~~v~ivqs~~~~~~~~l~ell~~~~a~~~~-~a~~i~~v 66 (238)
+-|.+++++..++.|+++.++-..-+. ++..++.|+.. |+++|.++
T Consensus 113 ~yy~KLP~~~~~~~viv~DPMLATG~s----~i~ai~~L~~~G~~~~I~~v 159 (210)
T COG0035 113 LYYEKLPEDIDERTVIVLDPMLATGGS----AIAAIDLLKKRGGPKNIKVV 159 (210)
T ss_pred hhHHhCCCcccCCeEEEECchhhccHh----HHHHHHHHHHhCCCceEEEE
Confidence 456678888889999999887554444 45667778888 88888743
No 214
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=27.38 E-value=1.2e+02 Score=26.42 Aligned_cols=35 Identities=20% Similarity=0.097 Sum_probs=28.8
Q ss_pred CCCCCEEEEEeCcccchHHHHHHHHHHHHCCCCEEEEEE
Q 026473 189 DVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACC 227 (238)
Q Consensus 189 ~v~gk~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~ 227 (238)
++++++|+| +-+|++-..++..|.+.|+++|.++-
T Consensus 124 ~~~~k~vlI----lGaGGaaraia~aL~~~G~~~I~I~n 158 (284)
T PRK12549 124 DASLERVVQ----LGAGGAGAAVAHALLTLGVERLTIFD 158 (284)
T ss_pred CccCCEEEE----ECCcHHHHHHHHHHHHcCCCEEEEEC
Confidence 467788875 57899999999999999998888763
No 215
>PRK14467 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=27.31 E-value=3.7e+02 Score=24.39 Aligned_cols=59 Identities=10% Similarity=0.112 Sum_probs=27.5
Q ss_pred CCCchhHHHHHHHHHHHHhcC-CCeEEEEecccCccccccccCCCCchhHHHHHHHHHHhCCC
Q 026473 39 PPANENLMELLIMIDACRRAS-AKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGAD 100 (238)
Q Consensus 39 ~~~~~~l~ell~~~~a~~~~~-a~~i~~viPY~~YsRqdr~~~~~~~~~~~~~a~ll~~~g~~ 100 (238)
+..||+.=++--+++-++... ..+| -++||-||.-.+ +.+-+.=..+.+.+.|...|+.
T Consensus 261 pGvNDs~e~a~~La~~l~~l~~~~~V-nLIPynp~~~~~--~~~ps~e~i~~f~~~L~~~gi~ 320 (348)
T PRK14467 261 KGVNDSPEDALRLAQLIGKNKKKFKV-NLIPFNPDPELP--YERPELERVYKFQKILWDNGIS 320 (348)
T ss_pred CCccCCHHHHHHHHHHHhcCCCceEE-EEecCCCCCCCC--CCCCCHHHHHHHHHHHHHCCCc
Confidence 334555555555555555442 1223 357777766432 2111112233455566665644
No 216
>PRK14093 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase; Provisional
Probab=27.24 E-value=5.2e+02 Score=24.18 Aligned_cols=71 Identities=15% Similarity=0.156 Sum_probs=40.7
Q ss_pred cEEEEecCCCCCchhHHHHHHHHHHHHhc---CCCeEEEEeccc--CccccccccCCCCchhHHHHHHHHHHhCCCEEEE
Q 026473 30 DVYLVQPTCPPANENLMELLIMIDACRRA---SAKNITAVIPYF--GYARADRKTQGRESIAAKLVANLITEAGADRVLA 104 (238)
Q Consensus 30 ~v~ivqs~~~~~~~~l~ell~~~~a~~~~---~a~~i~~viPY~--~YsRqdr~~~~~~~~~~~~~a~ll~~~g~~~vi~ 104 (238)
.+.+|........+.+. -.++++++. ...++.+|+.=+ -|+|.++.+ +.+++.+...++|.|+.
T Consensus 338 ~~~iIDDsYahnP~s~~---aaL~~l~~~~~~~~~r~i~V~G~m~elg~~~~~~h--------~~~~~~~~~~~~d~v~~ 406 (479)
T PRK14093 338 EATLIDESYNANPASMA---AALGVLGRAPVGPQGRRIAVLGDMLELGPRGPELH--------RGLAEAIRANAIDLVFC 406 (479)
T ss_pred CEEEEECCCCCCHHHHH---HHHHHHHhhhccCCCCEEEEECChHHcCcHHHHHH--------HHHHHHHHHcCCCEEEE
Confidence 45666642222234444 444555553 234566666432 355543321 57888888889999999
Q ss_pred EecCChh
Q 026473 105 CDLHSGQ 111 (238)
Q Consensus 105 vdlHs~~ 111 (238)
+..++..
T Consensus 407 ~G~~~~~ 413 (479)
T PRK14093 407 CGPLMRN 413 (479)
T ss_pred EchhHHH
Confidence 9876543
No 217
>PRK09246 amidophosphoribosyltransferase; Provisional
Probab=26.98 E-value=1.3e+02 Score=28.78 Aligned_cols=41 Identities=20% Similarity=0.244 Sum_probs=29.1
Q ss_pred cCCcCCCcEEEEecCCCCCchhHHHHHHHHHHHHhcCCCeEEEEe
Q 026473 23 QESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVI 67 (238)
Q Consensus 23 ~~~v~g~~v~ivqs~~~~~~~~l~ell~~~~a~~~~~a~~i~~vi 67 (238)
...++|++|++|....- .-.. +--++.+||++||++|.+.+
T Consensus 353 ~~~v~gK~VlLVDDvit--TGaT--l~~~~~~L~~aGA~~V~v~v 393 (501)
T PRK09246 353 RAEFKGKNVLLVDDSIV--RGTT--SEQIVQMAREAGAKKVYFAS 393 (501)
T ss_pred cccccCCeEEEEecccc--ccHH--HHHHHHHHHHcCCCEEEEEE
Confidence 34688999999976432 2223 33477999999999988654
No 218
>COG1402 Uncharacterized protein, putative amidase [General function prediction only]
Probab=26.93 E-value=2.8e+02 Score=23.97 Aligned_cols=70 Identities=16% Similarity=0.259 Sum_probs=46.9
Q ss_pred CchhHHHHHHHHHHHHhcCCCeEEEEecccCcccc--ccccCCCC-chhHHHH-------HHHHHHhCCCEEEEEecCCh
Q 026473 41 ANENLMELLIMIDACRRASAKNITAVIPYFGYARA--DRKTQGRE-SIAAKLV-------ANLITEAGADRVLACDLHSG 110 (238)
Q Consensus 41 ~~~~l~ell~~~~a~~~~~a~~i~~viPY~~YsRq--dr~~~~~~-~~~~~~~-------a~ll~~~g~~~vi~vdlHs~ 110 (238)
.-|+++--.+.-.+..+.+++ ..++|-++|.-. -+.| +|. .++...+ ++=|...|+++++.++=|-.
T Consensus 39 gTD~~ia~~ia~~~~~~~~~~--a~vlP~i~yG~s~eH~~f-pGTitl~~~t~~~~~~~~~~Sl~~~Gfrk~v~vNgHGG 115 (250)
T COG1402 39 GTDALIAEAIAEKVAERLGAE--ALVLPTIYYGVSLEHMGF-PGTITLSPETLIALLVELVESLARHGFRKFVIVNGHGG 115 (250)
T ss_pred chhHHHHHHHHHHHHHHhCCC--eEEeCccccccchhhcCC-CceEEccHHHHHHHHHHHHHHHHhcCccEEEEEecCCC
Confidence 457888888888888888877 678887777654 2332 332 2333333 33344569999999999976
Q ss_pred hcc
Q 026473 111 QSM 113 (238)
Q Consensus 111 ~~~ 113 (238)
+..
T Consensus 116 N~~ 118 (250)
T COG1402 116 NSA 118 (250)
T ss_pred cHH
Confidence 643
No 219
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=26.72 E-value=1e+02 Score=26.49 Aligned_cols=75 Identities=24% Similarity=0.288 Sum_probs=41.1
Q ss_pred HHHHHHHHcCCCCEEE-EEEEeCCCCcEEEEEeccCCCCCEEEEEeC------cccchHHHHHHHHHHHHCCCCEEEEEE
Q 026473 155 RARAFAKKLSDAPLAI-VDKRRHGHNVAEVMNLIGDVKGKVAVMVDD------MIDTAGTIAKGAALLHQEGAREVYACC 227 (238)
Q Consensus 155 ~a~~~a~~l~~~~~~~-~~k~r~~~~~~~~~~~~~~v~gk~vlIVDD------ii~TG~Tl~~a~~~Lk~~Ga~~V~~~~ 227 (238)
|-..+-+.|. +++.+ ++|..++... .+.-.-|-++--+|+++|. ++.-..-+.-.-+.+.+.||.-|| +
T Consensus 129 Rre~LI~iLD-Idl~WRmHkvSDGqrR-RVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVY--A 204 (291)
T KOG2355|consen 129 RREKLIDILD-IDLRWRMHKVSDGQRR-RVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVY--A 204 (291)
T ss_pred Hhhhhhhhee-ccceEEEeeccccchh-hhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEE--E
Confidence 4555556665 55432 3343332211 1111224456678999885 444444455555666778887665 8
Q ss_pred EcccccC
Q 026473 228 THAVFRL 234 (238)
Q Consensus 228 tH~~fs~ 234 (238)
|| +|.|
T Consensus 205 TH-IFDG 210 (291)
T KOG2355|consen 205 TH-IFDG 210 (291)
T ss_pred ee-eccc
Confidence 88 7765
No 220
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=26.57 E-value=1.4e+02 Score=20.87 Aligned_cols=35 Identities=29% Similarity=0.257 Sum_probs=20.5
Q ss_pred CCCEEEEEeCcccchHHHHHH--HHHHHHCCCCEEEE
Q 026473 191 KGKVAVMVDDMIDTAGTIAKG--AALLHQEGAREVYA 225 (238)
Q Consensus 191 ~gk~vlIVDDii~TG~Tl~~a--~~~Lk~~Ga~~V~~ 225 (238)
++++|++.+.--..+.....+ ...|++.|.+.|++
T Consensus 66 ~~~~iv~yc~~~~~~~~~~~~~~~~~l~~~g~~~v~~ 102 (113)
T PF00581_consen 66 KDKDIVFYCSSGWRSGSAAAARVAWILKKLGFKNVYI 102 (113)
T ss_dssp TTSEEEEEESSSCHHHHHHHHHHHHHHHHTTTSSEEE
T ss_pred ccccceeeeecccccchhHHHHHHHHHHHcCCCCEEE
Confidence 566888888433333333333 22388889887754
No 221
>cd04725 OMP_decarboxylase_like Orotidine 5'-phosphate decarboxylase (ODCase) is a dimeric enzyme that decarboxylates orotidine 5'-monophosphate (OMP) to form uridine 5'-phosphate (UMP), an essential step in the pyrimidine biosynthetic pathway. In mammals, UMP synthase contains two domains: the orotate phosphoribosyltransferase (OPRTase) domain that catalyzes the transfer of phosphoribosyl 5'-pyrophosphate (PRPP) to orotate to form OMP, and the orotidine-5'-phosphate decarboxylase (ODCase) domain that decarboxylates OMP to form UMP.
Probab=26.50 E-value=40 Score=28.13 Aligned_cols=81 Identities=21% Similarity=0.145 Sum_probs=40.6
Q ss_pred EEEeCCCchHHHHHHHHHcCCCCEEEEEEEeCCCCcEEEEEeccCCCCCEEEEEeCc--ccchHHHHHHHHHHHHCCCCE
Q 026473 145 VVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDM--IDTAGTIAKGAALLHQEGARE 222 (238)
Q Consensus 145 iv~pd~g~~~~a~~~a~~l~~~~~~~~~k~r~~~~~~~~~~~~~~v~gk~vlIVDDi--i~TG~Tl~~a~~~Lk~~Ga~~ 222 (238)
+|+.|.--..++..+++.++ +...+.|--..--...-......++.....|+=|. .|.|.|+..+++.+.+.|+.-
T Consensus 2 ivALD~~~~~~a~~i~~~~~--~~v~~iKvg~~l~~~~g~~~i~~l~~~~~~i~~DlK~~DIg~tv~~~~~~~~~~gad~ 79 (216)
T cd04725 2 IVALDPPDEEFALALIDALG--PYVCAVKVGLELFEAAGPEIVKELRELGFLVFLDLKLGDIPNTVAAAAEALLGLGADA 79 (216)
T ss_pred EEEeCCCCHHHHHHHHHhcC--CcccEEEECHHHHHhcCHHHHHHHHHCCCcEEEEeecCchHHHHHHHHHHHHhcCCCE
Confidence 56777777777888888776 32222222110000000001111221123344443 677888888888777776554
Q ss_pred EEEEEEcc
Q 026473 223 VYACCTHA 230 (238)
Q Consensus 223 V~~~~tH~ 230 (238)
++.|+
T Consensus 80 ---~Tvh~ 84 (216)
T cd04725 80 ---VTVHP 84 (216)
T ss_pred ---EEECC
Confidence 44554
No 222
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=26.22 E-value=45 Score=29.27 Aligned_cols=32 Identities=13% Similarity=0.083 Sum_probs=27.5
Q ss_pred cchHHHHHHHHHHHHCCCCEEEEEEEcccccC
Q 026473 203 DTAGTIAKGAALLHQEGAREVYACCTHAVFRL 234 (238)
Q Consensus 203 ~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~~fs~ 234 (238)
|.|+|-...++..++.+++.+.++..|+.|-+
T Consensus 96 Dv~S~K~~v~~a~~~~~~~~~~~vg~HPM~G~ 127 (279)
T COG0287 96 DVGSVKSSVVEAMEKYLPGDVRFVGGHPMFGP 127 (279)
T ss_pred ecccccHHHHHHHHHhccCCCeeEecCCCCCC
Confidence 46888888888999998886799999999976
No 223
>TIGR01143 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase. This family consists of the strictly bacterial MurF gene of peptidoglycan biosynthesis. This enzyme is almost always UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase, but in a few species, MurE adds lysine rather than diaminopimelate. This enzyme acts on the product from MurE activity, and so is also subfamily rather than equivalog. Staphylococcus aureus is an example of species in this MurF protein would differ.
Probab=25.77 E-value=4e+02 Score=24.33 Aligned_cols=53 Identities=17% Similarity=0.115 Sum_probs=31.0
Q ss_pred HHHHHHHHhcCCCeEEEEeccc----CccccccccCCCCchhHHHHHHHHHHhCCCEEEEEecCChhc
Q 026473 49 LIMIDACRRASAKNITAVIPYF----GYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQS 112 (238)
Q Consensus 49 l~~~~a~~~~~a~~i~~viPY~----~YsRqdr~~~~~~~~~~~~~a~ll~~~g~~~vi~vdlHs~~~ 112 (238)
.-.+++++... .++.+|+-=+ .|++.. -+.+++++....+|.++.+.-+...+
T Consensus 313 ~~al~~l~~~~-~r~i~VlG~~~e~G~~~~~~----------~~~l~~~~~~~~~d~vi~~g~~~~~~ 369 (417)
T TIGR01143 313 RAALDALARFP-GKKILVLGDMAELGEYSEEL----------HAEVGRYANSLGIDLVFLVGEEAAVI 369 (417)
T ss_pred HHHHHHHHhCC-CCEEEEEcCchhcChHHHHH----------HHHHHHHHHHcCCCEEEEECHHHHHH
Confidence 34456666543 4666776433 122211 13578888777789999987665444
No 224
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=25.52 E-value=2.8e+02 Score=23.24 Aligned_cols=113 Identities=19% Similarity=0.205 Sum_probs=63.1
Q ss_pred CCcEEEEecCCCCCchhHHHHHHHHHHHHhcCCCeEEEEecccCc-cccccccCCCCchhHHHHHHHHHHhCCCEEEEEe
Q 026473 28 GCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVIPYFGY-ARADRKTQGRESIAAKLVANLITEAGADRVLACD 106 (238)
Q Consensus 28 g~~v~ivqs~~~~~~~~l~ell~~~~a~~~~~a~~i~~viPY~~Y-sRqdr~~~~~~~~~~~~~a~ll~~~g~~~vi~vd 106 (238)
|.+-+++.|... -..=++-+.+++.|..++.+-+.+..= .=..+-......++...+++.++..|+.+++..|
T Consensus 95 Ga~~Vvigt~~~------~~~~~l~~~~~~~g~~~ivvslD~~~g~~v~~~gw~~~~~~~~~~~~~~~~~~g~~~ii~td 168 (229)
T PF00977_consen 95 GADRVVIGTEAL------EDPELLEELAERYGSQRIVVSLDARDGYKVATNGWQESSGIDLEEFAKRLEELGAGEIILTD 168 (229)
T ss_dssp T-SEEEESHHHH------HCCHHHHHHHHHHGGGGEEEEEEEEETEEEEETTTTEEEEEEHHHHHHHHHHTT-SEEEEEE
T ss_pred CCCEEEeChHHh------hchhHHHHHHHHcCcccEEEEEEeeeceEEEecCccccCCcCHHHHHHHHHhcCCcEEEEee
Confidence 555556665322 112235556677788888888887641 0001111112246788899999999999999999
Q ss_pred cCChhccCccCccCccccccHHHHHHHHhccCCCCCeEEEEeCCCchHHHHHHHH
Q 026473 107 LHSGQSMGYFDIPVDHVYCQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAK 161 (238)
Q Consensus 107 lHs~~~~~~f~~~~~~l~~~~~la~~i~~~~~~~~~~viv~pd~g~~~~a~~~a~ 161 (238)
+.+.-...-+| ..+.+.+.+.. +-++++ .||+.=..++..
T Consensus 169 i~~dGt~~G~d---------~~~~~~l~~~~---~~~via---sGGv~~~~Dl~~ 208 (229)
T PF00977_consen 169 IDRDGTMQGPD---------LELLKQLAEAV---NIPVIA---SGGVRSLEDLRE 208 (229)
T ss_dssp TTTTTTSSS-----------HHHHHHHHHHH---SSEEEE---ESS--SHHHHHH
T ss_pred ccccCCcCCCC---------HHHHHHHHHHc---CCCEEE---ecCCCCHHHHHH
Confidence 99876643344 24455565543 345666 455544445444
No 225
>PRK07349 amidophosphoribosyltransferase; Provisional
Probab=25.28 E-value=1.3e+02 Score=28.70 Aligned_cols=41 Identities=17% Similarity=0.240 Sum_probs=29.3
Q ss_pred cCCcCCCcEEEEecCCCCCchhHHHHHHHHHHHHhcCCCeEEEEe
Q 026473 23 QESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVI 67 (238)
Q Consensus 23 ~~~v~g~~v~ivqs~~~~~~~~l~ell~~~~a~~~~~a~~i~~vi 67 (238)
.+.++|+.|++|....- .-.. +.-++.+||++||+.|.+-+
T Consensus 372 ~~~~~gkrVlLVDDvIt--tGtT--l~~~~~~Lr~aGAkeV~~~i 412 (500)
T PRK07349 372 KDVLAGKRIIIVDDSIV--RGTT--SRKIVKALRDAGATEVHMRI 412 (500)
T ss_pred ccccCCCEEEEEeceeC--CcHH--HHHHHHHHHHhCCeEEEEEe
Confidence 45678999999976432 1222 45577999999999988764
No 226
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=25.09 E-value=1.5e+02 Score=22.10 Aligned_cols=29 Identities=14% Similarity=-0.018 Sum_probs=22.8
Q ss_pred CCCEEEEEeCcccchHHHHHHHHHHHHCCCC
Q 026473 191 KGKVAVMVDDMIDTAGTIAKGAALLHQEGAR 221 (238)
Q Consensus 191 ~gk~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~ 221 (238)
+++.+++.++ .+|.+-..++..|+..|-+
T Consensus 85 ~~~~vvvyC~--~~G~rs~~a~~~L~~~G~~ 113 (128)
T cd01520 85 RDPKLLIYCA--RGGMRSQSLAWLLESLGID 113 (128)
T ss_pred CCCeEEEEeC--CCCccHHHHHHHHHHcCCc
Confidence 5778999887 4566777788999999984
No 227
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=25.03 E-value=1.6e+02 Score=20.55 Aligned_cols=35 Identities=23% Similarity=0.318 Sum_probs=25.8
Q ss_pred CCCCCEEEEEeCcccchHHHHHHHHHHHHCCCCEEEEEE
Q 026473 189 DVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACC 227 (238)
Q Consensus 189 ~v~gk~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~ 227 (238)
+++||-||+-..-+ ++..-++..+++||.-+.++-
T Consensus 31 ~~~gkIvlv~rg~~----~~~~k~~~a~~~GA~gvIi~~ 65 (101)
T PF02225_consen 31 DVKGKIVLVERGSC----SFDDKVRNAQKAGAKGVIIYN 65 (101)
T ss_dssp TCTTSEEEEESTSS----CHHHHHHHHHHTTESEEEEE-
T ss_pred cccceEEEEecCCC----CHHHHHHHHHHcCCEEEEEEe
Confidence 68998888732222 677777888899999988877
No 228
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=24.79 E-value=1.2e+02 Score=21.94 Aligned_cols=36 Identities=33% Similarity=0.431 Sum_probs=26.2
Q ss_pred CCCCCEEEEEeCcccchHHHHHHHHHHHHCCCCEEEEEEEc
Q 026473 189 DVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTH 229 (238)
Q Consensus 189 ~v~gk~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH 229 (238)
+++||+|+||= .|..-..-++.|.+.|| +|.+++..
T Consensus 4 ~l~~~~vlVvG----gG~va~~k~~~Ll~~gA-~v~vis~~ 39 (103)
T PF13241_consen 4 DLKGKRVLVVG----GGPVAARKARLLLEAGA-KVTVISPE 39 (103)
T ss_dssp --TT-EEEEEE----ESHHHHHHHHHHCCCTB-EEEEEESS
T ss_pred EcCCCEEEEEC----CCHHHHHHHHHHHhCCC-EEEEECCc
Confidence 67899999874 48888888888999995 67777755
No 229
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=24.72 E-value=1.4e+02 Score=28.29 Aligned_cols=42 Identities=17% Similarity=0.206 Sum_probs=29.8
Q ss_pred cCCcCCCcEEEEecCCCCCchhHHHHHHHHHHHHhcCCCeEEEEec
Q 026473 23 QESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVIP 68 (238)
Q Consensus 23 ~~~v~g~~v~ivqs~~~~~~~~l~ell~~~~a~~~~~a~~i~~viP 68 (238)
.+.++|+.|++|....- .-+. +--++.+||++||++|.+.+.
T Consensus 343 ~~~i~gk~VlLVDDvit--tGtT--l~~~~~~Lk~aGA~eV~v~i~ 384 (471)
T PRK06781 343 RGVVEGKRVVMIDDSIV--RGTT--SKRIVRMLREAGATEVHVRIA 384 (471)
T ss_pred ccccCCceEEEEeceec--cchH--HHHHHHHHHHcCCcEEEEEEC
Confidence 35578999999876421 2223 335788999999999987763
No 230
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=24.59 E-value=3.7e+02 Score=23.32 Aligned_cols=66 Identities=26% Similarity=0.288 Sum_probs=39.7
Q ss_pred HHHHHHhCCCEEEEEecCChhccCccCccC------ccccccHHHHHHHHhccCCCCCeEEEEeCCCchHHHHHHHHHcC
Q 026473 91 ANLITEAGADRVLACDLHSGQSMGYFDIPV------DHVYCQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLS 164 (238)
Q Consensus 91 a~ll~~~g~~~vi~vdlHs~~~~~~f~~~~------~~l~~~~~la~~i~~~~~~~~~~viv~pd~g~~~~a~~~a~~l~ 164 (238)
|+.|+..|+|-|+. +.||+.|. +.+.+...++.++++.. .-++=|-.....-.-+-.+|...|
T Consensus 34 a~~l~~~GvD~viv--------eN~~d~P~~~~~~p~tva~m~~i~~~v~~~~---~~p~GvnvL~nd~~aal~iA~a~g 102 (257)
T TIGR00259 34 AMALEEGGVDAVMF--------ENFFDAPFLKEVDPETVAAMAVIAGQLKSDV---SIPLGINVLRNDAVAALAIAMAVG 102 (257)
T ss_pred HHHHHhCCCCEEEE--------ecCCCCCCcCCCCHHHHHHHHHHHHHHHHhc---CCCeeeeeecCCCHHHHHHHHHhC
Confidence 66788889999998 44555444 23455566666676653 223333334544445667777776
Q ss_pred CCCE
Q 026473 165 DAPL 168 (238)
Q Consensus 165 ~~~~ 168 (238)
.++
T Consensus 103 -a~F 105 (257)
T TIGR00259 103 -AKF 105 (257)
T ss_pred -CCE
Confidence 554
No 231
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=24.23 E-value=1.4e+02 Score=25.31 Aligned_cols=39 Identities=13% Similarity=0.074 Sum_probs=26.2
Q ss_pred EeccCCCCCEEEEEeCcccchHHHHHH-HHHHHHCCCCEEEEEEEc
Q 026473 185 NLIGDVKGKVAVMVDDMIDTAGTIAKG-AALLHQEGAREVYACCTH 229 (238)
Q Consensus 185 ~~~~~v~gk~vlIVDDii~TG~Tl~~a-~~~Lk~~Ga~~V~~~~tH 229 (238)
.+.-+++||+|+|| .||.+..- ++.|.+.||+ |.+++.+
T Consensus 18 pi~l~~~~~~VLVV-----GGG~VA~RK~~~Ll~~gA~-VtVVap~ 57 (223)
T PRK05562 18 FISLLSNKIKVLII-----GGGKAAFIKGKTFLKKGCY-VYILSKK 57 (223)
T ss_pred eeEEECCCCEEEEE-----CCCHHHHHHHHHHHhCCCE-EEEEcCC
Confidence 34346789999998 45555433 6677788866 7766654
No 232
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=24.17 E-value=2.5e+02 Score=19.36 Aligned_cols=35 Identities=31% Similarity=0.451 Sum_probs=27.6
Q ss_pred CCCCCEEEEEeCcccchHHHHHHHHHHHHCCCCEEEEEE
Q 026473 189 DVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACC 227 (238)
Q Consensus 189 ~v~gk~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~ 227 (238)
++++++++| +-+|..-..++..|.+.|..+|+++-
T Consensus 20 ~~~~~~v~i----~G~G~~g~~~a~~l~~~~~~~v~v~~ 54 (86)
T cd05191 20 SLKGKTVVV----LGAGEVGKGIAKLLADEGGKKVVLCD 54 (86)
T ss_pred CCCCCEEEE----ECCCHHHHHHHHHHHHcCCCEEEEEc
Confidence 467888877 45688888889999998888887764
No 233
>PF02698 DUF218: DUF218 domain; InterPro: IPR003848 This domain of unknown function is found in several uncharacterised proteins.; PDB: 3CA8_A.
Probab=24.15 E-value=90 Score=24.02 Aligned_cols=36 Identities=11% Similarity=0.138 Sum_probs=21.9
Q ss_pred CEEEEEeCcccchHHHHHHHHHHHHCCCCEEEEEEE
Q 026473 193 KVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCT 228 (238)
Q Consensus 193 k~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~t 228 (238)
.++++-+---+|-..+..+.+.+++.|.++|.+++.
T Consensus 71 ~~I~~e~~s~~T~ena~~~~~~~~~~~~~~iilVT~ 106 (155)
T PF02698_consen 71 ERIILEPKSTNTYENARFSKRLLKERGWQSIILVTS 106 (155)
T ss_dssp GGEEEE----SHHHHHHHHHHHHHT-SSS-EEEE--
T ss_pred heeEccCCCCCHHHHHHHHHHHHHhhcCCeEEEECC
Confidence 355555556668888888889999999888886664
No 234
>PRK05819 deoD purine nucleoside phosphorylase; Reviewed
Probab=24.00 E-value=4.4e+02 Score=22.15 Aligned_cols=80 Identities=19% Similarity=0.235 Sum_probs=50.7
Q ss_pred CCCchHHHHHHHH-HcCCCCEEEEEEEeCCCCcEEEEEeccCCCCCEEEEEeCcccchHHHHHHHHHHHHCCCCEEEEEE
Q 026473 149 DVGGVARARAFAK-KLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACC 227 (238)
Q Consensus 149 d~g~~~~a~~~a~-~l~~~~~~~~~k~r~~~~~~~~~~~~~~v~gk~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~ 227 (238)
..|--.|+..+|. .++. + ..+...| .. ....|..+|++|.|+-=-+-.-.+-..+.+++...|++.|.-+-
T Consensus 18 ~~Gdp~r~~~ia~~~l~~-~-~~~~~~r----~~--~~~~G~~~g~~v~v~~tGiG~~~aai~~~eLi~~~~~~~iI~~G 89 (235)
T PRK05819 18 MPGDPLRAKYIAETFLED-V-VCVNEVR----GM--LGFTGTYKGKRVSVMGTGMGIPSISIYANELITDYGVKKLIRVG 89 (235)
T ss_pred ecCCHHHHHHHHHHHhcC-c-Eeeeeec----cE--EEEEEEECCEEEEEEecCCChhHHHHHHHHHHHhcCCcEEEEEe
Confidence 3566678888987 4652 2 1222222 11 22446778999999976664444444455566679999998888
Q ss_pred EcccccCCC
Q 026473 228 THAVFRLDY 236 (238)
Q Consensus 228 tH~~fs~~~ 236 (238)
+=|-+.++.
T Consensus 90 taG~l~~~l 98 (235)
T PRK05819 90 SCGALQEDV 98 (235)
T ss_pred cccCCCCCC
Confidence 888777654
No 235
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=23.77 E-value=36 Score=29.22 Aligned_cols=31 Identities=10% Similarity=-0.095 Sum_probs=20.6
Q ss_pred chHHHHHHHHHHHHCCCCEEEEEEEcccccC
Q 026473 204 TAGTIAKGAALLHQEGAREVYACCTHAVFRL 234 (238)
Q Consensus 204 TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~~fs~ 234 (238)
.|++-....+.+++.....+..+.+|+.|..
T Consensus 78 v~SvK~~~~~~~~~~~~~~~~~v~~HPM~G~ 108 (258)
T PF02153_consen 78 VGSVKAPIVEAMERLLPEGVRFVGGHPMAGP 108 (258)
T ss_dssp --S-CHHHHHHHHHHHTSSGEEEEEEESCST
T ss_pred eCCCCHHHHHHHHHhcCcccceeecCCCCCC
Confidence 3445445555555666677899999999987
No 236
>PHA01634 hypothetical protein
Probab=23.63 E-value=77 Score=24.89 Aligned_cols=32 Identities=19% Similarity=0.172 Sum_probs=21.4
Q ss_pred CCCCCEEEEEeCcccchHHHHHHHHHHHHCCCCEEEEE
Q 026473 189 DVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYAC 226 (238)
Q Consensus 189 ~v~gk~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~ 226 (238)
+++||+|++| |+.+-..+=...-+||++|..+
T Consensus 26 dvk~KtV~dI------GA~iGdSaiYF~l~GAK~Vva~ 57 (156)
T PHA01634 26 NVYQRTIQIV------GADCGSSALYFLLRGASFVVQY 57 (156)
T ss_pred eecCCEEEEe------cCCccchhhHHhhcCccEEEEe
Confidence 7899998877 4444333334445799998865
No 237
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=23.51 E-value=2e+02 Score=22.93 Aligned_cols=40 Identities=23% Similarity=0.192 Sum_probs=26.8
Q ss_pred CCCCCEEEEEeCcc---------cch------HHHHHHHHHHHHCCCCEEEEEEE
Q 026473 189 DVKGKVAVMVDDMI---------DTA------GTIAKGAALLHQEGAREVYACCT 228 (238)
Q Consensus 189 ~v~gk~vlIVDDii---------~TG------~Tl~~a~~~Lk~~Ga~~V~~~~t 228 (238)
||+||-|++..+-- ..| ++...=.+.++++||.-|.++..
T Consensus 47 DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~v~~ 101 (157)
T cd04821 47 DVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALIVHE 101 (157)
T ss_pred CcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEEEeC
Confidence 89999998883322 112 23344567788999998877754
No 238
>PRK08341 amidophosphoribosyltransferase; Provisional
Probab=23.37 E-value=1.3e+02 Score=28.25 Aligned_cols=40 Identities=23% Similarity=0.326 Sum_probs=29.2
Q ss_pred CCcCCCcEEEEecCCCCCchhHHHHHHHHHHHHhcCCCeEEEEe
Q 026473 24 ESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVI 67 (238)
Q Consensus 24 ~~v~g~~v~ivqs~~~~~~~~l~ell~~~~a~~~~~a~~i~~vi 67 (238)
..++|++|++|...- +.-.. +--++++||++||++|.+.+
T Consensus 330 ~~v~gk~VlLVDD~I--ttGtT--l~~~~~~L~~aGAk~V~~~~ 369 (442)
T PRK08341 330 EVINGKRVVLVDDSI--VRGTT--MKRIVKMLRDAGAREVHVRI 369 (442)
T ss_pred cccCCCEEEEEeeee--ccHHH--HHHHHHHHHhcCCcEEEEEE
Confidence 457899999997642 12233 44478999999999988776
No 239
>PF09861 DUF2088: Domain of unknown function (DUF2088); InterPro: IPR018657 This domain, found in various hypothetical proteins, has no known function. ; PDB: 2YJG_B.
Probab=23.28 E-value=1.6e+02 Score=24.49 Aligned_cols=39 Identities=18% Similarity=0.249 Sum_probs=24.4
Q ss_pred CCEEEEEeCcccc---hHHHHHHHHHHHHCCC--CEEEEEEEcc
Q 026473 192 GKVAVMVDDMIDT---AGTIAKGAALLHQEGA--REVYACCTHA 230 (238)
Q Consensus 192 gk~vlIVDDii~T---G~Tl~~a~~~Lk~~Ga--~~V~~~~tH~ 230 (238)
.|-+|+|||+-.. +.-+..+.+.|+++|. +.|.+++..|
T Consensus 55 ~~V~Ivv~D~TRp~p~~~il~~ll~~L~~~Gv~~~~i~ii~A~G 98 (204)
T PF09861_consen 55 KRVAIVVDDITRPTPSDLILPALLEELEEAGVKDEDITIIIALG 98 (204)
T ss_dssp SEEEEEEE-TTS---HHHHHHHHHHHHHT-T-TT-EEEEEEE-T
T ss_pred CeEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCccCEEEEEeCC
Confidence 4577888998764 3447778899999898 4677777554
No 240
>PRK08202 purine nucleoside phosphorylase; Provisional
Probab=23.25 E-value=1.3e+02 Score=26.20 Aligned_cols=51 Identities=10% Similarity=0.206 Sum_probs=36.1
Q ss_pred ccCCCCCEEEEEeCccc--chHH---HHHHHHHHHHCCCCEEEEEEEcccccCCCC
Q 026473 187 IGDVKGKVAVMVDDMID--TAGT---IAKGAALLHQEGAREVYACCTHAVFRLDYK 237 (238)
Q Consensus 187 ~~~v~gk~vlIVDDii~--TG~T---l~~a~~~Lk~~Ga~~V~~~~tH~~fs~~~~ 237 (238)
.|.+.|++|+++---+- .|.+ +...++.|++.|++.|....+=|-+..+++
T Consensus 67 ~G~l~g~~Vv~~~g~~H~yeG~~~~~~~a~i~~l~~lGv~~II~tgaaGsL~~~l~ 122 (272)
T PRK08202 67 LGRLGGKPVLAMQGRFHYYEGYSMEAVTFPVRVMKALGVETLIVTNAAGGLNPDFG 122 (272)
T ss_pred EEEECCEEEEEEccCCcccCCCCHHHHHHHHHHHHHcCCCEEEEecccccCCCCCC
Confidence 46788999999872110 0223 445567999999999999988887777654
No 241
>PRK08373 aspartate kinase; Validated
Probab=22.90 E-value=5.7e+02 Score=23.10 Aligned_cols=28 Identities=21% Similarity=0.172 Sum_probs=23.3
Q ss_pred cccccCCCCchhHHHHHHHHHHhCCCEE
Q 026473 75 ADRKTQGRESIAAKLVANLITEAGADRV 102 (238)
Q Consensus 75 qdr~~~~~~~~~~~~~a~ll~~~g~~~v 102 (238)
+|....-||-+|+.+++..|+..|++..
T Consensus 102 ~D~ils~GE~lSa~lla~~L~~~Gi~a~ 129 (341)
T PRK08373 102 RDYILSFGERLSAVLFAEALENEGIKGK 129 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCceE
Confidence 3555567899999999999999998765
No 242
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=22.78 E-value=1.8e+02 Score=27.20 Aligned_cols=37 Identities=16% Similarity=0.287 Sum_probs=31.5
Q ss_pred eccCCCCCEEEEEeCcccchHHHHHHHHHHHHCCCCEEEEE
Q 026473 186 LIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYAC 226 (238)
Q Consensus 186 ~~~~v~gk~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~ 226 (238)
..++++++++++| -.|.+..-+++.|.++|...|.++
T Consensus 172 ~~~~L~~~~vlvI----GAGem~~lva~~L~~~g~~~i~Ia 208 (414)
T COG0373 172 IFGSLKDKKVLVI----GAGEMGELVAKHLAEKGVKKITIA 208 (414)
T ss_pred HhcccccCeEEEE----cccHHHHHHHHHHHhCCCCEEEEE
Confidence 3457899999986 568899999999999999998876
No 243
>PF04298 Zn_peptidase_2: Putative neutral zinc metallopeptidase; InterPro: IPR007395 Members of this family of bacterial proteins are described as hypothetical proteins or zinc-dependent proteases. The majority have a HExxH zinc-binding motif characteristic of neutral zinc metallopeptidases, however there is no evidence to support their function as metallopeptidases.
Probab=22.64 E-value=1.2e+02 Score=25.85 Aligned_cols=35 Identities=20% Similarity=0.162 Sum_probs=27.5
Q ss_pred chHHHHHHH-HHHHHCCCCEEEEEEEcccccCCCCC
Q 026473 204 TAGTIAKGA-ALLHQEGAREVYACCTHAVFRLDYKS 238 (238)
Q Consensus 204 TG~Tl~~a~-~~Lk~~Ga~~V~~~~tH~~fs~~~~~ 238 (238)
+|.|=.+++ +.|++.|...|.+-.+-|-+++-||+
T Consensus 35 ~g~TGae~Ar~iL~~~gl~~V~Ve~~~G~LtDHYdP 70 (222)
T PF04298_consen 35 SGMTGAEVARHILDRNGLSDVRVERVPGELTDHYDP 70 (222)
T ss_pred CCCCHHHHHHHHHHHCCCCCeeEEEeCCCCCCCcCC
Confidence 355544444 46788999999999999999999986
No 244
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=22.45 E-value=2.5e+02 Score=25.93 Aligned_cols=134 Identities=12% Similarity=0.143 Sum_probs=62.8
Q ss_pred eeeeCCCceEEEecCCcCCCcEEEEecCCCCCchhHHHHHHHHHHHHhcCCCeEEEEecccCccccccccCCCCchhHHH
Q 026473 10 IKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVIPYFGYARADRKTQGRESIAAKL 89 (238)
Q Consensus 10 ~~~F~dGE~~v~i~~~v~g~~v~ivqs~~~~~~~~l~ell~~~~a~~~~~a~~i~~viPY~~YsRqdr~~~~~~~~~~~~ 89 (238)
+..|..-+-+.++-....| +.++... .+.| .-...-.+++++....+++++|+.-+. + |.-+ ..
T Consensus 299 L~~f~g~~~R~e~v~~~~g--v~~idDs-~atN--~~a~~~al~~l~~~~~~~iilI~Gg~~--k-~~d~--------~~ 362 (448)
T PRK03803 299 LRTFTGLPHRCEWVREVAG--VDYYNDS-KGTN--VGATVAAIEGLGAHIQGKLVLIAGGDG--K-GADF--------SP 362 (448)
T ss_pred HhhCCCCCCceEEEEEeCC--eEEEEcC-CcCC--HHHHHHHHHhhhhcCCCCEEEEECCCC--C-CCCH--------HH
Confidence 3455544444444322223 3344332 2222 333444455554432246778874321 1 2211 12
Q ss_pred HHHHHHHhCCCEEEEEecCChhccCccC--ccCccccccHHHHHHHHhccCCCCCeEEEEeCCCchHHHHHHHH
Q 026473 90 VANLITEAGADRVLACDLHSGQSMGYFD--IPVDHVYCQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAK 161 (238)
Q Consensus 90 ~a~ll~~~g~~~vi~vdlHs~~~~~~f~--~~~~~l~~~~~la~~i~~~~~~~~~~viv~pd~g~~~~a~~~a~ 161 (238)
+.+.+... ++.++.+..+...+...+. .++..........+++.+.. ..++.++++|..+++..-+.+.+
T Consensus 363 l~~~l~~~-~~~vil~G~~~~~i~~~l~~~~~~~~~~~~~~a~~~a~~~a-~~gdvVL~SPa~aSfd~f~~~~~ 434 (448)
T PRK03803 363 LREPVAKY-VRAVVLIGRDADKIAAALGGAVPLVRVATLAEAVAKAAELA-QAGDIVLLSPACASLDMFKNFEA 434 (448)
T ss_pred HHHHHHhh-CCEEEEECCCHHHHHHHHhcCCCEEEeCCHHHHHHHHHHhC-CCCCEEEeCchhhcccccCCHHH
Confidence 44545443 6778887766655432221 11111122333334443322 34568999999988766555544
No 245
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=22.35 E-value=1.9e+02 Score=28.36 Aligned_cols=37 Identities=16% Similarity=0.175 Sum_probs=30.6
Q ss_pred CCCCCEEEEEeCcccchHHHHHHHHHHHHCCCCEEEEEEEc
Q 026473 189 DVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTH 229 (238)
Q Consensus 189 ~v~gk~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH 229 (238)
+..||+|+||- .|.|-..++..+.+.|+++|.++.-+
T Consensus 465 ~~~gk~VvVIG----gG~~a~d~A~~a~r~ga~~Vt~i~~~ 501 (654)
T PRK12769 465 NTAGLNVVVLG----GGDTAMDCVRTALRHGASNVTCAYRR 501 (654)
T ss_pred cCCCCeEEEEC----CcHHHHHHHHHHHHcCCCeEEEeEec
Confidence 35799999995 78888888888889999999876644
No 246
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=22.21 E-value=2e+02 Score=22.85 Aligned_cols=39 Identities=23% Similarity=0.269 Sum_probs=27.6
Q ss_pred CCCCCEEEEEeCcc-------cch-------HHHHHHHHHHHHCCCCEEEEEE
Q 026473 189 DVKGKVAVMVDDMI-------DTA-------GTIAKGAALLHQEGAREVYACC 227 (238)
Q Consensus 189 ~v~gk~vlIVDDii-------~TG-------~Tl~~a~~~Lk~~Ga~~V~~~~ 227 (238)
|++||-||+....- .+| .++..=++..+++||.-|.++.
T Consensus 45 DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIv~~ 97 (151)
T cd04822 45 DVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAVIVVN 97 (151)
T ss_pred CCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCeEEEEEe
Confidence 79999998876531 111 3566667778899999888775
No 247
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=21.68 E-value=2.2e+02 Score=18.36 Aligned_cols=27 Identities=15% Similarity=0.206 Sum_probs=21.9
Q ss_pred cccchHHHHHHHHHHHHCCCCEEEEEE
Q 026473 201 MIDTAGTIAKGAALLHQEGAREVYACC 227 (238)
Q Consensus 201 ii~TG~Tl~~a~~~Lk~~Ga~~V~~~~ 227 (238)
+=+.-|.+.++.+.|.++|.+-.++++
T Consensus 8 v~d~pG~La~v~~~l~~~~inI~~i~~ 34 (66)
T cd04908 8 LENKPGRLAAVTEILSEAGINIRALSI 34 (66)
T ss_pred EcCCCChHHHHHHHHHHCCCCEEEEEE
Confidence 445788999999999999998666665
No 248
>KOG1481 consensus Cysteine synthase [Amino acid transport and metabolism]
Probab=21.63 E-value=1e+02 Score=27.53 Aligned_cols=32 Identities=22% Similarity=0.152 Sum_probs=26.2
Q ss_pred ccchHHHHHHHHHHHHCCCCEEEEEEEccccc
Q 026473 202 IDTAGTIAKGAALLHQEGAREVYACCTHAVFR 233 (238)
Q Consensus 202 i~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~~fs 233 (238)
.-||+|+.-..+.||++...+|.++..-+-=|
T Consensus 221 ~GTGGTiaGVskyLkek~~~~v~~~laDPpGS 252 (391)
T KOG1481|consen 221 TGTGGTIAGVSKYLKEKSDGRVAVFLADPPGS 252 (391)
T ss_pred cCCCcchHHHHHHHhhcCCCceEEEEeCCCCC
Confidence 45999999999999999888888887655433
No 249
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=21.23 E-value=3e+02 Score=23.31 Aligned_cols=50 Identities=20% Similarity=0.301 Sum_probs=33.4
Q ss_pred hhHHHHHHHHHHHHhcCCCeEEEEecccCccccccccCCCCchhHHHHHHHHHHhCCCEEEEEecCC
Q 026473 43 ENLMELLIMIDACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHS 109 (238)
Q Consensus 43 ~~l~ell~~~~a~~~~~a~~i~~viPY~~YsRqdr~~~~~~~~~~~~~a~ll~~~g~~~vi~vdlHs 109 (238)
....++|.+. ++..++++|--+=.+.+||- -++|.-+..-| +++|+|.-.
T Consensus 45 ~e~g~~L~~L--~~~~~~k~iLEiGT~~GySa-------------l~mA~~l~~~g--~l~tiE~~~ 94 (219)
T COG4122 45 PETGALLRLL--ARLSGPKRILEIGTAIGYSA-------------LWMALALPDDG--RLTTIERDE 94 (219)
T ss_pred hhHHHHHHHH--HHhcCCceEEEeecccCHHH-------------HHHHhhCCCCC--eEEEEeCCH
Confidence 3344444444 44458999999999999974 36777666534 899988433
No 250
>TIGR03455 HisG_C-term ATP phosphoribosyltransferase, C-terminal domain. This domain corresponds to the C-terminal third of the HisG protein. It is absent in many lineages.
Probab=21.12 E-value=1.4e+02 Score=21.91 Aligned_cols=23 Identities=17% Similarity=0.215 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHHCCCCEEEEEE
Q 026473 205 AGTIAKGAALLHQEGAREVYACC 227 (238)
Q Consensus 205 G~Tl~~a~~~Lk~~Ga~~V~~~~ 227 (238)
-..+..+++.|+++||+.|.++-
T Consensus 73 ~~~v~~~~~~Lk~~GA~~Ilv~~ 95 (100)
T TIGR03455 73 EKVVNELIDKLKAAGARDILVLP 95 (100)
T ss_pred HHHHHHHHHHHHHcCCCeEEEec
Confidence 56788999999999999998764
No 251
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=21.07 E-value=4.4e+02 Score=23.85 Aligned_cols=58 Identities=12% Similarity=0.188 Sum_probs=27.0
Q ss_pred CCchhHHHHHHHHHHHHhcCCCeEEEEecccCccccccccCCCCchhHHHHHHHHHHhCCCE
Q 026473 40 PANENLMELLIMIDACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADR 101 (238)
Q Consensus 40 ~~~~~l~ell~~~~a~~~~~a~~i~~viPY~~YsRqdr~~~~~~~~~~~~~a~ll~~~g~~~ 101 (238)
..||+.-++--+++-++.... +|. ++||-||...+- .+-+.-..+.+.+.|...|+.-
T Consensus 268 GvNDs~e~a~~La~llk~l~~-~Vn-LIPynp~~~~~~--~~ps~e~i~~f~~~L~~~gi~v 325 (355)
T TIGR00048 268 GVNDQVEHAEELAELLKGTKC-KVN-LIPWNPFPEADY--ERPSNEQIDRFAKTLMSYGFTV 325 (355)
T ss_pred CCCCCHHHHHHHHHHHhcCCC-ceE-EEecccCCCCCC--CCCCHHHHHHHHHHHHHCCCeE
Confidence 355555555555555555432 333 357766654321 1111122334555565555443
No 252
>PRK11024 colicin uptake protein TolR; Provisional
Probab=20.62 E-value=3e+02 Score=21.11 Aligned_cols=35 Identities=23% Similarity=0.171 Sum_probs=26.3
Q ss_pred CEEEEEeCcccchHHHHHHHHHHHHCCCCEEEEEE
Q 026473 193 KVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACC 227 (238)
Q Consensus 193 k~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~ 227 (238)
..|+|-=|==.+=+++..+.+.++++|..+|.+.+
T Consensus 104 ~~V~i~aD~~~~~~~vv~vmd~~k~aG~~~v~l~t 138 (141)
T PRK11024 104 TVFLIGGAKDVPYDEIIKALNLLHSAGVKSVGLMT 138 (141)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEe
Confidence 34555444445566999999999999999998754
No 253
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=20.56 E-value=5.2e+02 Score=23.38 Aligned_cols=21 Identities=19% Similarity=0.154 Sum_probs=9.5
Q ss_pred HHHHHHHHHhCCCEEEEEecCC
Q 026473 88 KLVANLITEAGADRVLACDLHS 109 (238)
Q Consensus 88 ~~~a~ll~~~g~~~vi~vdlHs 109 (238)
+.+++++...++ +|=.++.|.
T Consensus 274 ~~La~~l~~l~~-~VnLIPynp 294 (345)
T PRK14457 274 EELANLLRGFQS-HVNLIPYNP 294 (345)
T ss_pred HHHHHHHhcCCC-eEEEecCCC
Confidence 445555544432 444444444
No 254
>PF03681 UPF0150: Uncharacterised protein family (UPF0150); InterPro: IPR005357 This family of small proteins is uncharacterised. In Q9A3L8 from SWISSPROT this domain is found next to a DNA binding helix-turn-helix domain IPR002145 from INTERPRO, which suggests that this is some kind of ligand binding domain.; PDB: 2DSY_C 2YZT_A 3KWR_A.
Probab=20.51 E-value=40 Score=20.78 Aligned_cols=19 Identities=5% Similarity=0.085 Sum_probs=16.3
Q ss_pred CcccchHHHHHHHHHHHHC
Q 026473 200 DMIDTAGTIAKGAALLHQE 218 (238)
Q Consensus 200 Dii~TG~Tl~~a~~~Lk~~ 218 (238)
..++.|.|+.++.+.++++
T Consensus 23 g~~t~G~t~eea~~~~~ea 41 (48)
T PF03681_consen 23 GCFTQGDTLEEALENAKEA 41 (48)
T ss_dssp TCEEEESSHHHHHHHHHHH
T ss_pred ChhhcCCCHHHHHHHHHHH
Confidence 4679999999999998864
No 255
>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]
Probab=20.43 E-value=2.1e+02 Score=25.68 Aligned_cols=176 Identities=16% Similarity=0.207 Sum_probs=94.8
Q ss_pred cCCCcEEEEecCCCCCchhHHHHHHHHHHHHhc----C----CCeEEEEecccCccccccccCCCCchhHHHHHHHHHHh
Q 026473 26 VRGCDVYLVQPTCPPANENLMELLIMIDACRRA----S----AKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEA 97 (238)
Q Consensus 26 v~g~~v~ivqs~~~~~~~~l~ell~~~~a~~~~----~----a~~i~~viPY~~YsRqdr~~~~~~~~~~~~~a~ll~~~ 97 (238)
..+++++=+..+ ..+++++||-..+.++.. + .+.-++..-||-.|...| .|-..-++ ..
T Consensus 5 ~~~rhlis~~dl---s~~ei~~ll~~A~~~~~~~~~~~~~~~l~gk~v~~lFFEpSTRTr-------~SFE~A~k---rL 71 (316)
T COG0540 5 FKMRHLISIEDL---SREELELLLDTADEFKAVARAEKKLDLLKGKVVANLFFEPSTRTR-------LSFETAMK---RL 71 (316)
T ss_pred CcccceechHhC---CHHHHHHHHHHHHHHHHhhhccCCcchhcCcEEEEEEecCCCchh-------hhHHHHHH---Hc
Confidence 445666644444 357899999999888753 1 011133444454443222 22233333 34
Q ss_pred CCCEEEEEecCChhccCccCccCccccccHHHHHHHHhcc-CCCCCeE-EEEeCCCchHHHHHHHHHcCCC-CEEEEEEE
Q 026473 98 GADRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLASKT-VSSNDLV-VVSPDVGGVARARAFAKKLSDA-PLAIVDKR 174 (238)
Q Consensus 98 g~~~vi~vdlHs~~~~~~f~~~~~~l~~~~~la~~i~~~~-~~~~~~v-iv~pd~g~~~~a~~~a~~l~~~-~~~~~~k~ 174 (238)
|. .|+.++.-..... ..+.|++.+.... +. -+.+ +=-|..|+...+ |+..+ + |+.-..--
T Consensus 72 G~-~Vv~~~~~~sSs~-----------KGEtL~DT~~tl~ayg-~D~iViRH~~egaa~~~---a~~~~-~~pvINaGDG 134 (316)
T COG0540 72 GA-DVVNFSDSESSSK-----------KGETLADTIRTLSAYG-VDAIVIRHPEEGAARLL---AEFSG-VNPVINAGDG 134 (316)
T ss_pred CC-cEEeecCCccccc-----------ccccHHHHHHHHHhhC-CCEEEEeCccccHHHHH---HHhcC-CCceEECCCC
Confidence 55 4565553322221 2455666655421 12 3333 334666665444 44444 5 42211111
Q ss_pred eCCCC-c-----EEEEEeccCCCCCEEEEEeCcccchHHHHHHHHHHHHCCCCEEEEEEEccccc
Q 026473 175 RHGHN-V-----AEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHAVFR 233 (238)
Q Consensus 175 r~~~~-~-----~~~~~~~~~v~gk~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~~fs 233 (238)
+..+. + ..+....|.++|.+|.|+=|+- -|.|...-++.|+..| .+|++++.--+..
T Consensus 135 ~~qHPTQ~LLDl~TI~~~~G~~~gl~iaivGDlk-hsRva~S~~~~L~~~g-a~v~lvsP~~L~~ 197 (316)
T COG0540 135 SHQHPTQALLDLYTIREEFGRLDGLKIAIVGDLK-HSRVAHSNIQALKRFG-AEVYLVSPETLLP 197 (316)
T ss_pred CCCCccHHHHHHHHHHHHhCCcCCcEEEEEcccc-chHHHHHHHHHHHHcC-CEEEEECchHhCC
Confidence 11111 1 0112345789999999999976 7999999999999999 7788777544444
No 256
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=20.28 E-value=1.7e+02 Score=21.40 Aligned_cols=34 Identities=18% Similarity=0.265 Sum_probs=23.3
Q ss_pred CCCCEEEEEeCcccchHH--HHHHHHHHHHCCCCEEEE
Q 026473 190 VKGKVAVMVDDMIDTAGT--IAKGAALLHQEGAREVYA 225 (238)
Q Consensus 190 v~gk~vlIVDDii~TG~T--l~~a~~~Lk~~Ga~~V~~ 225 (238)
+..++++|+ +--+|.| +.++++.++++|++-|.+
T Consensus 44 ~~~~d~~I~--iS~sG~t~e~~~~~~~a~~~g~~vi~i 79 (126)
T cd05008 44 LDEDTLVIA--ISQSGETADTLAALRLAKEKGAKTVAI 79 (126)
T ss_pred CCCCcEEEE--EeCCcCCHHHHHHHHHHHHcCCeEEEE
Confidence 444566666 4456665 778889999999875544
No 257
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2. A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola
Probab=20.27 E-value=2.6e+02 Score=21.03 Aligned_cols=39 Identities=28% Similarity=0.213 Sum_probs=27.1
Q ss_pred CCCCCEEEEEeCcccchHHHHHHHHHHHHCCCCEEEEEEEc
Q 026473 189 DVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTH 229 (238)
Q Consensus 189 ~v~gk~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH 229 (238)
+++||-|++-...+. .+...-++...++||.-|.++..+
T Consensus 42 ~v~GkIvlv~~g~~~--~~~~~k~~~A~~~GA~avi~~~~~ 80 (127)
T cd04819 42 DLEGKIAVVKRDDPD--VDRKEKYAKAVAAGAAAFVVVNTV 80 (127)
T ss_pred CCCCeEEEEEcCCCc--hhHHHHHHHHHHCCCEEEEEEeCC
Confidence 689986655443331 256667778889999998888644
No 258
>PLN02398 hydroxyacylglutathione hydrolase
Probab=20.23 E-value=1.5e+02 Score=26.64 Aligned_cols=37 Identities=19% Similarity=0.148 Sum_probs=27.3
Q ss_pred CCCCCEEEEEeCcccchHHHHHHHHHHHHCCCCEEEEEEEcc
Q 026473 189 DVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHA 230 (238)
Q Consensus 189 ~v~gk~vlIVDDii~TG~Tl~~a~~~Lk~~Ga~~V~~~~tH~ 230 (238)
+-+++.+++||. | ......+.|++.|..--+++.||.
T Consensus 94 d~~t~~~~vVDP----~-~a~~vl~~l~~~g~~L~~ILlTH~ 130 (329)
T PLN02398 94 DEDTGTVGVVDP----S-EAVPVIDALSRKNRNLTYILNTHH 130 (329)
T ss_pred ECCCCEEEEEcC----C-CHHHHHHHHHhcCCCceEEEECCC
Confidence 445568888884 2 345677778888888789999996
No 259
>PRK07631 amidophosphoribosyltransferase; Provisional
Probab=20.18 E-value=2.1e+02 Score=27.20 Aligned_cols=42 Identities=19% Similarity=0.231 Sum_probs=29.3
Q ss_pred cCCcCCCcEEEEecCCCCCchhHHHHHHHHHHHHhcCCCeEEEEec
Q 026473 23 QESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVIP 68 (238)
Q Consensus 23 ~~~v~g~~v~ivqs~~~~~~~~l~ell~~~~a~~~~~a~~i~~viP 68 (238)
.+.++|+.|++|...- +--..+ --++.+||++||++|.+.+.
T Consensus 343 ~~~v~gk~VlLVDDsi--ttGtTl--~~~~~~L~~aGA~eV~v~~~ 384 (475)
T PRK07631 343 RGVVEGKRVVMVDDSI--VRGTTS--RRIVTMLREAGATEVHVRIS 384 (475)
T ss_pred ccccCCceEEEEeeee--ccHHHH--HHHHHHHHHcCCCEEEEEEe
Confidence 3567899999987632 223333 35778999999999887653
No 260
>TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein.
Probab=20.14 E-value=61 Score=26.90 Aligned_cols=77 Identities=19% Similarity=0.190 Sum_probs=42.1
Q ss_pred EEEeCCCchHHHHHHHHHcCCCCEEEEEEEeC----CCCcEEEEEeccCCCCCEEEEEeCc--ccchHHHHHHHHHHHHC
Q 026473 145 VVSPDVGGVARARAFAKKLSDAPLAIVDKRRH----GHNVAEVMNLIGDVKGKVAVMVDDM--IDTAGTIAKGAALLHQE 218 (238)
Q Consensus 145 iv~pd~g~~~~a~~~a~~l~~~~~~~~~k~r~----~~~~~~~~~~~~~v~gk~vlIVDDi--i~TG~Tl~~a~~~Lk~~ 218 (238)
+++.|..-...+..+++.++. ...+ .|--. ..+. .....++.....++=|+ .|.|.|....++.+.+.
T Consensus 2 ivAlD~~~~~~a~~~~~~~~~-~v~~-iKig~~l~~~~G~----~~v~~l~~~~~~v~lD~K~~Dig~t~~~~~~~~~~~ 75 (213)
T TIGR01740 2 IVALDVTTKDEALDLADSLGP-EIEV-IKVGIDLLLDGGD----KIIDELAKLNKLIFLDLKFADIPNTVKLQYESKIKQ 75 (213)
T ss_pred EEECCCCCHHHHHHHHHhcCC-cCcE-EEECHHHHHhcCH----HHHHHHHHcCCCEEEEEeecchHHHHHHHHHHHHhc
Confidence 566677777777777777762 1112 12210 0000 01111221122566777 88899988888888877
Q ss_pred CCCEEEEEEEcc
Q 026473 219 GAREVYACCTHA 230 (238)
Q Consensus 219 Ga~~V~~~~tH~ 230 (238)
||.-+ +.|+
T Consensus 76 gad~v---Tvh~ 84 (213)
T TIGR01740 76 GADMV---NVHG 84 (213)
T ss_pred CCCEE---EEcC
Confidence 76644 4554
No 261
>PF03195 DUF260: Protein of unknown function DUF260; InterPro: IPR004883 The lateral organ boundaries (LOB) gene is expressed at the adaxial base of initiating lateral organs and encodes a plant-specific protein of unknown function. The N-terminal one half of the LOB protein contains a conserved approximately 100-amino acid domain (the LOB domain) that is present in 42 other Arabidopsis thaliana proteins and in proteins from a variety of other plant species. Genes encoding LOB domain (LBD) proteins are expressed in a variety of temporal- and tissue-specific patterns, suggesting that they may function in diverse processes [] The LOB domain contains conserved blocks of amino acids that identify the LBD gene family. In particular, a conserved C-x(2)-C-x(6)-C-x(3)-C motif, which is defining feature of the LOB domain, is present in all LBD proteins. It is possible that this motif forms a new zinc finger [].
Probab=20.10 E-value=25 Score=26.00 Aligned_cols=43 Identities=16% Similarity=0.333 Sum_probs=25.5
Q ss_pred HHHhcCCCeEEEEecccCccccccccCCCCchhHHHHHHHHHHh
Q 026473 54 ACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEA 97 (238)
Q Consensus 54 a~~~~~a~~i~~viPY~~YsRqdr~~~~~~~~~~~~~a~ll~~~ 97 (238)
-+|+-+... ....||||..+..+-..-...+.+.-+.+||+..
T Consensus 7 ~lRr~C~~~-C~laPyFP~~~~~~F~~vhkvFG~sni~k~L~~~ 49 (101)
T PF03195_consen 7 HLRRRCSPD-CVLAPYFPADQPQRFANVHKVFGVSNISKMLQEL 49 (101)
T ss_pred HHhCCCCCC-CcCCCCCChhHHHHHHHHHHHHchhHHHHHHHhC
Confidence 345555555 4689999998754322233345555667777653
Done!