Query 026474
Match_columns 238
No_of_seqs 149 out of 205
Neff 2.5
Searched_HMMs 29240
Date Mon Mar 25 14:25:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026474.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026474hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g92_A HAPB protein; transcrip 100.0 1.5E-38 5.2E-43 233.8 5.5 62 143-204 2-64 (64)
2 3hde_A Lysozyme; antimicrobial 10.1 1.3E+02 0.0046 24.0 2.1 25 144-168 137-161 (165)
3 2anv_A Lysozyme; direct method 9.9 1E+02 0.0035 23.9 1.2 21 145-166 123-143 (146)
4 4ec6_A Putative uncharacterize 9.6 74 0.0025 26.8 0.4 15 20-34 58-72 (161)
5 1xju_A Lysozyme; secreted inac 9.4 1.5E+02 0.0051 23.6 2.1 26 144-169 127-152 (163)
6 1b9w_A Protein (merozoite surf 9.3 56 0.0019 25.5 -0.5 19 88-106 70-89 (95)
7 1xjt_A Lysozyme; open conforma 7.5 2E+02 0.0067 23.7 2.1 27 144-170 155-181 (191)
8 3n8i_A Low molecular weight ph 7.0 1.3E+02 0.0045 23.6 0.7 9 95-103 127-135 (157)
9 1qfq_B N36, 36-MER N-terminal 6.8 2E+02 0.007 18.7 1.5 15 157-171 4-18 (35)
10 2xc7_A Phosphorylated adapter 6.4 50 0.0017 25.7 -1.9 17 189-205 60-76 (104)
No 1
>4g92_A HAPB protein; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Emericella nidulans} PDB: 4g91_A*
Probab=100.00 E-value=1.5e-38 Score=233.75 Aligned_cols=62 Identities=60% Similarity=1.007 Sum_probs=58.6
Q ss_pred CCceeechhhhHHHHHHHHHHHHHHhhhhhh-hcCCCcccchhhHHHhhccCCCCCccccccc
Q 026474 143 EEPVFVNAKQYHGILRRRQSRAKAESENKVL-KSRKPYLHESRHLHALRRARGCGGRFLNSKK 204 (238)
Q Consensus 143 eePvyVNaKQY~rIlRRRq~RaklE~~~kl~-k~RKpYLHESRH~HAm~R~RG~gGRFL~~k~ 204 (238)
|||||||||||++|||||++|||+|++++++ +.||||||||||+|||+|+||+||||||++|
T Consensus 2 eePiyVNaKQy~~IlrRR~~Rakle~~~kl~~~~rk~YlhESRH~HAm~R~Rg~gGRFl~~~e 64 (64)
T 4g92_A 2 ESPLYVNAKQFHRILKRRVARQKLEEQLRLTSKGRKPYLHESRHNHAMRRPRGPGGRFLTADE 64 (64)
T ss_dssp -CCSCCCTTTHHHHHHHHHHHHHHHHHTTCCSSSCCSCSCHHHHHHHHHSCBCTTSCBCCCC-
T ss_pred CCCeeECHHHHHHHHHHHHHHHHHHHhCCcccccccCcchhHHHHHHhcCCcCCCCccccCCC
Confidence 7999999999999999999999999999985 8899999999999999999999999999986
No 2
>3hde_A Lysozyme; antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase, late protein; 1.95A {Enterobacteria phage P21}
Probab=10.07 E-value=1.3e+02 Score=24.03 Aligned_cols=25 Identities=20% Similarity=0.381 Sum_probs=19.8
Q ss_pred CceeechhhhHHHHHHHHHHHHHHh
Q 026474 144 EPVFVNAKQYHGILRRRQSRAKAES 168 (238)
Q Consensus 144 ePvyVNaKQY~rIlRRRq~RaklE~ 168 (238)
.-+|++-|...++.+||++...+=.
T Consensus 137 ~W~~agGk~~~GLv~RR~~E~~l~l 161 (165)
T 3hde_A 137 RWTYAGGKQWKGLMTRREIEREICL 161 (165)
T ss_dssp GCCEETTEECHHHHHHHHHHHHHHT
T ss_pred HHhhcCCEEchhHHHHHHHHHHHHH
Confidence 4566677899999999999877643
No 3
>2anv_A Lysozyme; direct methods, lanthinide binding sites, hydrolase; 1.04A {Enterobacteria phage P22} PDB: 2anx_A
Probab=9.86 E-value=1e+02 Score=23.90 Aligned_cols=21 Identities=14% Similarity=-0.026 Sum_probs=16.6
Q ss_pred ceeechhhhHHHHHHHHHHHHH
Q 026474 145 PVFVNAKQYHGILRRRQSRAKA 166 (238)
Q Consensus 145 PvyVNaKQY~rIlRRRq~Rakl 166 (238)
-+|.+-| ..++.+||++.+.+
T Consensus 123 w~~~~Gk-~~GL~~RR~~E~~l 143 (146)
T 2anv_A 123 WKKAGKD-PDILLPRRRRERAL 143 (146)
T ss_dssp CCCBTTB-TTTTHHHHHHHHHH
T ss_pred HHHcCCe-eHHHHHHHHHHHHH
Confidence 4566678 89999999987765
No 4
>4ec6_A Putative uncharacterized protein; GRAM-positive, conjugation, NTF2-like, unknown function; 2.50A {Enterococcus faecalis}
Probab=9.58 E-value=74 Score=26.76 Aligned_cols=15 Identities=13% Similarity=0.226 Sum_probs=11.6
Q ss_pred hhhhhhhhhhccccc
Q 026474 20 DLSCRFYMRDGLMTS 34 (238)
Q Consensus 20 ~~~~r~~~~~~~mts 34 (238)
|+|||||--.|.-.+
T Consensus 58 DvF~RyFLs~YfS~~ 72 (161)
T 4ec6_A 58 DTFGRYFLTYYFSQE 72 (161)
T ss_dssp HHHHHHHHHHHTCCC
T ss_pred eeeehhhhHHHhCCC
Confidence 789999987776533
No 5
>1xju_A Lysozyme; secreted inactive conformation, hydrolase; 1.07A {Enterobacteria phage P1} SCOP: d.2.1.3
Probab=9.37 E-value=1.5e+02 Score=23.61 Aligned_cols=26 Identities=19% Similarity=0.158 Sum_probs=20.6
Q ss_pred CceeechhhhHHHHHHHHHHHHHHhh
Q 026474 144 EPVFVNAKQYHGILRRRQSRAKAESE 169 (238)
Q Consensus 144 ePvyVNaKQY~rIlRRRq~RaklE~~ 169 (238)
.-+|++-|...++.+||++.+.|=..
T Consensus 127 ~W~~~gGk~~~GL~~RR~~E~~l~~~ 152 (163)
T 1xju_A 127 DFVNSNGVPLRGLKIRREKERQLCLT 152 (163)
T ss_dssp GCCEETTEECHHHHHHHHHHHHHHHT
T ss_pred HHhhcCCEEehhhHHHHHHHHHHHhC
Confidence 35666778899999999998887654
No 6
>1b9w_A Protein (merozoite surface protein 1); MSP-1, candidate malaria vaccine, surface antigen; 1.80A {Plasmodium cynomolgi} SCOP: g.3.11.4 g.3.11.4 PDB: 2npr_A
Probab=9.27 E-value=56 Score=25.49 Aligned_cols=19 Identities=11% Similarity=0.364 Sum_probs=15.8
Q ss_pred cccC-CCCCCCCCccccccc
Q 026474 88 MAPA-AYPYPDPYYRSIFAP 106 (238)
Q Consensus 88 ~a~~-~yPY~Dpyygg~~aa 106 (238)
|.|+ ..||..|||.|+|-.
T Consensus 70 IvC~C~~~~~~~~~~gvf~~ 89 (95)
T 1b9w_A 70 IVCKCTKEGSEPLFEGVFCS 89 (95)
T ss_dssp EEEECCSTTEEEEGGGTEEE
T ss_pred EEEECCCCCCCcceeeEEec
Confidence 5555 889999999999975
No 7
>1xjt_A Lysozyme; open conformation, hydrolase; HET: CIT; 1.75A {Enterobacteria phage P1} SCOP: d.2.1.3
Probab=7.46 E-value=2e+02 Score=23.69 Aligned_cols=27 Identities=19% Similarity=0.158 Sum_probs=21.0
Q ss_pred CceeechhhhHHHHHHHHHHHHHHhhh
Q 026474 144 EPVFVNAKQYHGILRRRQSRAKAESEN 170 (238)
Q Consensus 144 ePvyVNaKQY~rIlRRRq~RaklE~~~ 170 (238)
.-+|++-|...++.+||++...|=..+
T Consensus 155 ~W~~~gGk~l~GLv~RR~~E~~l~~~~ 181 (191)
T 1xjt_A 155 DFVNSNGVPLRGLKIRREKERQLCLTG 181 (191)
T ss_dssp GCCEETTEECHHHHHHHHHHHHHHHBT
T ss_pred HHhhcCCEEehhHHHHHHHHHHHHhCC
Confidence 455667788999999999988876543
No 8
>3n8i_A Low molecular weight phosphotyrosine protein PHOS; tyrosine phosphatase, hydrolase, protein-ligand complex; HET: NLA; 1.50A {Homo sapiens} SCOP: c.44.1.1 PDB: 5pnt_A* 1xww_A 1bvh_A 1dg9_A* 1phr_A 1pnt_A 1z12_A 1z13_A 1c0e_A 2p4u_A
Probab=6.99 E-value=1.3e+02 Score=23.60 Aligned_cols=9 Identities=44% Similarity=0.844 Sum_probs=7.2
Q ss_pred CCCCCcccc
Q 026474 95 YPDPYYRSI 103 (238)
Q Consensus 95 Y~Dpyygg~ 103 (238)
-.||||||.
T Consensus 127 VpDPy~~~~ 135 (157)
T 3n8i_A 127 IEDPYYGND 135 (157)
T ss_dssp CCCCTTSCH
T ss_pred CCCCCCCCH
Confidence 479999874
No 9
>1qfq_B N36, 36-MER N-terminal peptide of the N protein; bacteriophage lambda, antitermination, peptide-RNA-complex; NMR {Enterobacteria phage lambda} SCOP: j.9.5.1
Probab=6.82 E-value=2e+02 Score=18.68 Aligned_cols=15 Identities=40% Similarity=0.585 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHhhhh
Q 026474 157 LRRRQSRAKAESENK 171 (238)
Q Consensus 157 lRRRq~RaklE~~~k 171 (238)
-|||++|+...++=|
T Consensus 4 ~rrrerra~kqa~wk 18 (35)
T 1qfq_B 4 TRRRERRAEKQAQWK 18 (35)
T ss_dssp HHHHHHTHHHHHHHH
T ss_pred hHHHHHHHHHHhhhh
Confidence 478888877666544
No 10
>2xc7_A Phosphorylated adapter RNA export protein; RNA binding protein, protein-RNA complex, nuclear export; NMR {Homo sapiens}
Probab=6.44 E-value=50 Score=25.66 Aligned_cols=17 Identities=53% Similarity=0.565 Sum_probs=13.6
Q ss_pred hhccCCCCCcccccccc
Q 026474 189 LRRARGCGGRFLNSKKN 205 (238)
Q Consensus 189 m~R~RG~gGRFL~~k~~ 205 (238)
-.|.|-|||-|++-=+.
T Consensus 60 G~RrRTpGGVF~~LlK~ 76 (104)
T 2xc7_A 60 GSRRRTPGGVFLNLLKN 76 (104)
T ss_dssp SSSCCCHHHHHHHHHHH
T ss_pred CCcCCCCchhHHHHHhc
Confidence 37999999999976543
Done!