Query 026474
Match_columns 238
No_of_seqs 149 out of 205
Neff 2.5
Searched_HMMs 13730
Date Mon Mar 25 14:25:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026474.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/026474hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v8fa_ c.26.1.4 (A:) Pantothe 10.7 28 0.002 28.5 0.2 10 144-153 48-57 (276)
2 d1ob1c2 g.3.11.4 (C:46-96) Mer 8.5 47 0.0035 21.8 0.6 21 87-107 28-49 (51)
3 d1ihoa_ c.26.1.4 (A:) Pantothe 8.2 40 0.0029 27.7 0.2 11 144-154 53-63 (282)
4 d2axtl1 f.23.31.1 (L:1-37) Pho 7.3 79 0.0058 19.4 1.2 22 5-26 12-35 (37)
5 d2a84a1 c.26.1.4 (A:3-288) Pan 7.0 43 0.0031 27.4 -0.2 12 144-155 62-73 (286)
6 d1xjua_ d.2.1.3 (A:) Endolysin 5.6 1.4E+02 0.01 21.0 2.1 24 148-171 131-154 (158)
7 d1y7ua1 d.38.1.1 (A:8-171) Acy 4.2 3.3E+02 0.024 19.4 3.4 23 150-172 135-157 (164)
8 d1kl9a2 b.40.4.5 (A:3-88) Euka 4.1 72 0.0053 20.6 -0.5 22 21-42 1-27 (86)
9 d1p8aa_ c.44.1.1 (A:) Tyrosine 4.1 1.3E+02 0.0092 20.5 0.8 8 95-102 115-122 (146)
10 d1z60a1 g.49.1.2 (A:328-386) T 4.0 94 0.0068 20.6 0.0 7 179-185 47-53 (59)
No 1
>d1v8fa_ c.26.1.4 (A:) Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) {Thermus thermophilus [TaxId: 274]}
Probab=10.69 E-value=28 Score=28.52 Aligned_cols=10 Identities=50% Similarity=0.737 Sum_probs=7.8
Q ss_pred Cceeechhhh
Q 026474 144 EPVFVNAKQY 153 (238)
Q Consensus 144 ePvyVNaKQY 153 (238)
-.|||||.||
T Consensus 48 vSIFVNP~QF 57 (276)
T d1v8fa_ 48 VSVFVNPLQF 57 (276)
T ss_dssp EEECCCGGGC
T ss_pred EEEEecCccC
Confidence 4689999884
No 2
>d1ob1c2 g.3.11.4 (C:46-96) Merozoite surface protein 1 (MSP-1) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}
Probab=8.51 E-value=47 Score=21.77 Aligned_cols=21 Identities=19% Similarity=0.366 Sum_probs=16.2
Q ss_pred ccccC-CCCCCCCCcccccccC
Q 026474 87 AMAPA-AYPYPDPYYRSIFAPY 107 (238)
Q Consensus 87 s~a~~-~yPY~Dpyygg~~aaY 107 (238)
-|+|. .-|-..|||.|+|-.|
T Consensus 28 kIvC~Ck~p~~~~~~~GVFCS~ 49 (51)
T d1ob1c2 28 KITCECTKPDSYPLFDGIFCSH 49 (51)
T ss_dssp CCEEEECSTTCCEEGGGTEECC
T ss_pred eEEEEecCCCCCcccceEEeec
Confidence 36665 6677789999999875
No 3
>d1ihoa_ c.26.1.4 (A:) Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) {Escherichia coli [TaxId: 562]}
Probab=8.22 E-value=40 Score=27.65 Aligned_cols=11 Identities=36% Similarity=0.694 Sum_probs=8.7
Q ss_pred CceeechhhhH
Q 026474 144 EPVFVNAKQYH 154 (238)
Q Consensus 144 ePvyVNaKQY~ 154 (238)
-.|||||.||.
T Consensus 53 vSIFVNP~QF~ 63 (282)
T d1ihoa_ 53 VSIFVNPMQFD 63 (282)
T ss_dssp EEECCCGGGCS
T ss_pred EEEEecCccCc
Confidence 46899998864
No 4
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=7.26 E-value=79 Score=19.41 Aligned_cols=22 Identities=36% Similarity=0.477 Sum_probs=13.7
Q ss_pred hhhhhhhh--hHHhhhhhhhhhhh
Q 026474 5 LFATSLTS--ILLVVLPDLSCRFY 26 (238)
Q Consensus 5 ~~~~~~~~--~~~~~~~~~~~r~~ 26 (238)
|--|||-- +++.||-++|+-||
T Consensus 12 LNrtsLy~GlLlifvl~vLFssYf 35 (37)
T d2axtl1 12 LNRTSLYLGLLLILVLALLFSSYF 35 (37)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHHh
Confidence 33455543 34557788888877
No 5
>d2a84a1 c.26.1.4 (A:3-288) Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=6.99 E-value=43 Score=27.43 Aligned_cols=12 Identities=33% Similarity=0.600 Sum_probs=9.6
Q ss_pred CceeechhhhHH
Q 026474 144 EPVFVNAKQYHG 155 (238)
Q Consensus 144 ePvyVNaKQY~r 155 (238)
-.|||||.||.-
T Consensus 62 vSIFVNP~QF~~ 73 (286)
T d2a84a1 62 VSIFVNPMQFGA 73 (286)
T ss_dssp EEECCCCCCTTC
T ss_pred EEEeecccccCc
Confidence 578999999754
No 6
>d1xjua_ d.2.1.3 (A:) Endolysin Lyz {Bacteriophage P1 [TaxId: 10678]}
Probab=5.56 E-value=1.4e+02 Score=20.97 Aligned_cols=24 Identities=17% Similarity=0.159 Sum_probs=17.9
Q ss_pred echhhhHHHHHHHHHHHHHHhhhh
Q 026474 148 VNAKQYHGILRRRQSRAKAESENK 171 (238)
Q Consensus 148 VNaKQY~rIlRRRq~RaklE~~~k 171 (238)
.+-|-..++.+||++.+.|=.++.
T Consensus 131 ~~g~~~~GL~~RR~~E~~L~l~g~ 154 (158)
T d1xjua_ 131 SNGVPLRGLKIRREKERQLCLTGL 154 (158)
T ss_dssp ETTEECHHHHHHHHHHHHHHHTTT
T ss_pred cCCEEChhHHHHHHHHHHHHHccc
Confidence 344557899999999888866654
No 7
>d1y7ua1 d.38.1.1 (A:8-171) Acyl-coa hydrolase BC2038 {Bacillus cereus [TaxId: 1396]}
Probab=4.16 E-value=3.3e+02 Score=19.36 Aligned_cols=23 Identities=17% Similarity=0.135 Sum_probs=14.9
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhh
Q 026474 150 AKQYHGILRRRQSRAKAESENKV 172 (238)
Q Consensus 150 aKQY~rIlRRRq~RaklE~~~kl 172 (238)
.+.|..-.+|++.|...+.+.+-
T Consensus 135 ~~~~~~a~~r~~~R~~r~~~~~~ 157 (164)
T d1y7ua1 135 KESHRIAVLRAEQRHIRKAESKK 157 (164)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666777777776665553
No 8
>d1kl9a2 b.40.4.5 (A:3-88) Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.14 E-value=72 Score=20.64 Aligned_cols=22 Identities=32% Similarity=0.658 Sum_probs=11.9
Q ss_pred hhhhhhhhhc-----ccccccccCCCC
Q 026474 21 LSCRFYMRDG-----LMTSSVHDMSDN 42 (238)
Q Consensus 21 ~~~r~~~~~~-----~mtssv~~~S~n 42 (238)
|.||||+-.+ +.+-.|..+.++
T Consensus 1 ~~cr~~~~~~p~~G~iv~G~V~~i~~~ 27 (86)
T d1kl9a2 1 LSCRFYQHKFPEVEDVVMVNVRSIAEM 27 (86)
T ss_dssp CCCCSSSSSSCCTTCEEEEEEEEECSS
T ss_pred CeeeehhhcCCCCCCEEEEEEEEEeCC
Confidence 4678776543 444455555443
No 9
>d1p8aa_ c.44.1.1 (A:) Tyrosine phosphatase {Tritrichomonas foetus [TaxId: 5724]}
Probab=4.06 E-value=1.3e+02 Score=20.49 Aligned_cols=8 Identities=63% Similarity=1.169 Sum_probs=5.9
Q ss_pred CCCCCccc
Q 026474 95 YPDPYYRS 102 (238)
Q Consensus 95 Y~Dpyygg 102 (238)
-.|||||+
T Consensus 115 I~DPy~~~ 122 (146)
T d1p8aa_ 115 VDDPYYSS 122 (146)
T ss_dssp SCCCSSSS
T ss_pred CCCCCCCc
Confidence 35999874
No 10
>d1z60a1 g.49.1.2 (A:328-386) TFIIH p44 subunit cysteine-rich domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.98 E-value=94 Score=20.59 Aligned_cols=7 Identities=43% Similarity=1.028 Sum_probs=3.8
Q ss_pred cccchhh
Q 026474 179 YLHESRH 185 (238)
Q Consensus 179 YLHESRH 185 (238)
|+||+.|
T Consensus 47 fiHe~lh 53 (59)
T d1z60a1 47 FVHDSLH 53 (59)
T ss_dssp TTTTTSC
T ss_pred hhhhhhc
Confidence 4555555
Done!