Query 026475
Match_columns 238
No_of_seqs 112 out of 520
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 14:27:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026475.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026475hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 95.9 0.0047 1.6E-07 49.2 3.4 67 126-198 39-105 (137)
2 3b5d_A Multidrug transporter E 95.6 0.016 5.5E-07 44.0 5.2 69 124-198 37-105 (110)
3 2i68_A Protein EMRE; transmemb 45.9 0.25 8.5E-06 39.0 -7.3 28 1-28 78-105 (137)
4 2gfp_A EMRD, multidrug resista 14.3 3.3E+02 0.011 22.5 6.2 60 132-192 111-170 (375)
5 2jp3_A FXYD domain-containing 12.1 56 0.0019 22.5 0.4 25 173-197 15-39 (67)
6 2zxe_G FXYD10, phospholemman-l 10.9 62 0.0021 22.7 0.3 26 173-198 17-42 (74)
7 2akh_X Protein-export membrane 10.5 4.3E+02 0.015 18.1 7.0 26 110-136 50-75 (77)
8 2jo1_A Phospholemman; FXYD1, N 9.6 62 0.0021 22.6 -0.1 26 173-198 14-39 (72)
9 3b9w_A Ammonium transporter fa 9.5 5.2E+02 0.018 23.5 6.1 79 134-216 284-364 (407)
10 4hfv_A Uncharacterized protein 9.4 1.5E+02 0.0051 24.4 2.2 42 129-175 51-98 (190)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=95.95 E-value=0.0047 Score=49.15 Aligned_cols=67 Identities=18% Similarity=0.292 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHhhccccceeecchhhhhHHHHHHhhhhhhhcccCCCChhhHHHHHHHHHHHhheeeeecccc
Q 026475 126 CVVTQLNYLNKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFITVLSGTIILHATR 198 (238)
Q Consensus 126 tai~Ql~~LNkAL~~fda~~VvPv~~v~ft~~~ii~g~I~f~e~~~~~~~~~~~f~~G~~ii~~GV~lLs~~~ 198 (238)
+...-...+++|+++-|.+..+|+.-..=.+.+.+-|.++|+|= +++.+ .+|+.+++.||++++..+
T Consensus 39 ~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~--ls~~~----~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 39 CYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQR--LDLPA----IIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC--------C----HHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCC--CCHHH----HHHHHHHHHHHHHHhcCC
Confidence 34444678999999999999999965566667778889999983 44544 568889999999997543
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=95.64 E-value=0.016 Score=43.99 Aligned_cols=69 Identities=17% Similarity=0.297 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHhhccccceeecchhhhhHHHHHHhhhhhhhcccCCCChhhHHHHHHHHHHHhheeeeecccc
Q 026475 124 AVCVVTQLNYLNKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFITVLSGTIILHATR 198 (238)
Q Consensus 124 v~tai~Ql~~LNkAL~~fda~~VvPv~~v~ft~~~ii~g~I~f~e~~~~~~~~~~~f~~G~~ii~~GV~lLs~~~ 198 (238)
+++...-...+++|+|+-|.+..+|+.-..=...+.+.|.++|+| ..++.+ ..|..+++.||++++..+
T Consensus 37 ~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E--~~s~~~----~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQ--RLDLPA----IIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCC--CCCHHH----HHHHHHHHHHHHHHhcCC
Confidence 334444567889999999999999997677777788899999998 445655 568889999999997653
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=45.87 E-value=0.25 Score=39.05 Aligned_cols=28 Identities=21% Similarity=0.426 Sum_probs=17.7
Q ss_pred CCCccccccceeeeEeeeeceeEEEEec
Q 026475 1 MLKERLQKMGILGCITCIVGSVVIVIHA 28 (238)
Q Consensus 1 ~L~E~l~~~~~vG~~lii~G~~liV~~a 28 (238)
++||+++...++|+++++.|.+++-..+
T Consensus 78 ~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 78 FFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 4799999999999999999988775443
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=14.25 E-value=3.3e+02 Score=22.51 Aligned_cols=60 Identities=3% Similarity=-0.263 Sum_probs=29.7
Q ss_pred HHHHHhhccccceeecchhhhhHHHHHHhhhhhhhcccCCCChhhHHHHHHHHHHHhheee
Q 026475 132 NYLNKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFITVLSGTI 192 (238)
Q Consensus 132 ~~LNkAL~~fda~~VvPv~~v~ft~~~ii~g~I~f~e~~~~~~~~~~~f~~G~~ii~~GV~ 192 (238)
.++.+-...=+-....-+++..+.+..+++..+---=.+. ..++......+....+..+.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~ 170 (375)
T 2gfp_A 111 TLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTM-WNWRACYLFLLVLCAGVTFS 170 (375)
T ss_dssp HHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCH-HHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHH
Confidence 3344433333445556667777777666665443211111 13555555556555555553
No 5
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=12.09 E-value=56 Score=22.52 Aligned_cols=25 Identities=12% Similarity=0.194 Sum_probs=19.3
Q ss_pred ChhhHHHHHHHHHHHhheeeeeccc
Q 026475 173 DVSGIASEICGFITVLSGTIILHAT 197 (238)
Q Consensus 173 ~~~~~~~f~~G~~ii~~GV~lLs~~ 197 (238)
...++.+.+++.++.+.|+.+|.+.
T Consensus 15 ~tLRigGLifA~vLfi~GI~iilS~ 39 (67)
T 2jp3_A 15 ESLQLGGLIFGGLLCIAGIALALSG 39 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHheecchhhHHHHHHHHHHHHHcC
Confidence 4677788888888888888877654
No 6
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=10.87 E-value=62 Score=22.74 Aligned_cols=26 Identities=23% Similarity=0.220 Sum_probs=20.0
Q ss_pred ChhhHHHHHHHHHHHhheeeeecccc
Q 026475 173 DVSGIASEICGFITVLSGTIILHATR 198 (238)
Q Consensus 173 ~~~~~~~f~~G~~ii~~GV~lLs~~~ 198 (238)
...++.+.+++.++.+.|+.+|.+.|
T Consensus 17 ~tLRigGLifA~vLfi~GI~iilS~k 42 (74)
T 2zxe_G 17 YRLRVVGLIVAAVLCVIGIIILLAGK 42 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHheeccchhHHHHHHHHHHHHHcCc
Confidence 46778888888888888888876543
No 7
>2akh_X Protein-export membrane protein SECG; protein transport, translocation, transmembrane, transport; 14.90A {Escherichia coli} PDB: 2aki_X
Probab=10.46 E-value=4.3e+02 Score=18.07 Aligned_cols=26 Identities=15% Similarity=0.144 Sum_probs=15.3
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHH
Q 026475 110 QIAYPQTWFFLTVAAVCVVTQLNYLNK 136 (238)
Q Consensus 110 qf~~~~ty~~l~~lv~tai~Ql~~LNk 136 (238)
.+....||++.+++.++++. +.|+++
T Consensus 50 ~~L~k~T~~la~~F~v~sl~-l~~~~~ 75 (77)
T 2akh_X 50 NFMTRMTALLATLFFIISLV-LGNINS 75 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHhc
Confidence 34566677776666666554 455543
No 8
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=9.64 E-value=62 Score=22.56 Aligned_cols=26 Identities=19% Similarity=0.233 Sum_probs=20.5
Q ss_pred ChhhHHHHHHHHHHHhheeeeecccc
Q 026475 173 DVSGIASEICGFITVLSGTIILHATR 198 (238)
Q Consensus 173 ~~~~~~~f~~G~~ii~~GV~lLs~~~ 198 (238)
...++.+.+++.++.+.|+.+|...|
T Consensus 14 ~tLRiGGLifA~vLfi~GI~iilS~K 39 (72)
T 2jo1_A 14 QSLQIGGLVIAGILFILGILIVLSRR 39 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhccchHHHHHHHHHHHHHHHcCc
Confidence 46788888888888888888876553
No 9
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=9.51 E-value=5.2e+02 Score=23.53 Aligned_cols=79 Identities=11% Similarity=-0.039 Sum_probs=44.3
Q ss_pred HHHhhccccceeecchhhhhHHHHHHhhhhhhhcccCCCChhhHHHHHHHHHHHhheeeee--ccccCCCCCCCCCCccc
Q 026475 134 LNKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFITVLSGTIIL--HATREHEQTTAPVGTVT 211 (238)
Q Consensus 134 LNkAL~~fda~~VvPv~~v~ft~~~ii~g~I~f~e~~~~~~~~~~~f~~G~~ii~~GV~lL--s~~~~~~~~~~~~~~~~ 211 (238)
|++-++.-|+.-+.|+.-+.=...++..+. +-.+ .+..|++....-+...+.+-+++ -.++..+++++..++++
T Consensus 284 l~~~l~iDD~l~a~~vHgv~Gi~G~l~~gl-fa~~---~~~~Ql~g~~~~~~~s~v~~~i~~~il~~r~~~e~e~~g~~~ 359 (407)
T 3b9w_A 284 LESKAKTIDTCGVHNLHGLPGLLGGFSAIL-IVPG---IAVAQLTGIGITLALALIGGVIAGALIKLTGTTKQAYEDSHE 359 (407)
T ss_dssp HHHHSCCCCTTCHHHHTTHHHHHHHHHHHH-HSTT---CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSTTCGGGT
T ss_pred HHhcCCCCCCCCCeecchHHHHHHHHHHHH-HccC---CcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHcCCccc
Confidence 667799999999999987765555555433 2221 12357776655433333332221 11223333344566678
Q ss_pred cccCC
Q 026475 212 WYVSG 216 (238)
Q Consensus 212 ~~~~~ 216 (238)
|-+|+
T Consensus 360 we~p~ 364 (407)
T 3b9w_A 360 FIHLA 364 (407)
T ss_dssp SSSCC
T ss_pred ccCcc
Confidence 88874
No 10
>4hfv_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, effector, unknown function; HET: CIT; 1.90A {Legionella pneumophila subsp}
Probab=9.43 E-value=1.5e+02 Score=24.44 Aligned_cols=42 Identities=10% Similarity=0.194 Sum_probs=28.5
Q ss_pred HHHHHHHHhhccccceeecchhhhhHHHHHHhhhhhhh------cccCCCChh
Q 026475 129 TQLNYLNKALDTFNAAIVSPVYYVMFTTLTIIASAIMF------KDWSGQDVS 175 (238)
Q Consensus 129 ~Ql~~LNkAL~~fda~~VvPv~~v~ft~~~ii~g~I~f------~e~~~~~~~ 175 (238)
.|+.||+..+..-|++..-|- .=.++++|+.+| ++++.+++.
T Consensus 51 aQL~fL~t~l~~L~~~~~e~~-----~K~~Vl~gam~~V~~qI~~~y~~~~~~ 98 (190)
T 4hfv_A 51 PQVLVLLKTIELLDNSSKEPE-----DKARVLNALAYYIRDQIAATYKYTSPD 98 (190)
T ss_dssp HHHHHHHHHHHHHHTSCCCHH-----HHHHHHHHHHHHHHHHHHHTCSSSCGG
T ss_pred HHHHHHHHHHHHHHhhccchh-----HHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 599999999999999866665 224566666554 555554443
Done!