Query 026475
Match_columns 238
No_of_seqs 112 out of 520
Neff 6.3
Searched_HMMs 13730
Date Mon Mar 25 14:27:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026475.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/026475hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 9.8 31 0.0022 27.3 0.1 55 146-200 153-207 (447)
2 d1r3jc_ f.14.1.1 (C:) Potassiu 8.7 83 0.0061 20.7 2.2 27 168-194 56-82 (103)
3 d1wpga4 f.33.1.1 (A:1-124,A:24 5.9 2.5E+02 0.018 23.2 4.4 22 110-131 56-77 (472)
4 d2gmha2 d.16.1.8 (A:237-335) E 5.8 3.3E+02 0.024 18.0 4.2 29 22-50 52-80 (99)
5 d1rzhh2 f.23.10.1 (H:11-35) Ph 5.7 1.6E+02 0.012 14.9 1.8 13 112-124 6-18 (26)
6 d1m56d_ f.23.8.1 (D:) Bacteria 5.7 2E+02 0.015 16.4 2.5 17 111-127 19-35 (42)
7 d1r1fa_ g.3.3.4 (A:) Palicoure 5.7 1.1E+02 0.0079 16.6 1.1 14 221-234 23-36 (37)
8 d2npta1 d.15.2.2 (A:4-108) Mit 5.2 71 0.0052 22.0 0.1 14 221-234 60-73 (105)
9 d2ejna2 a.101.1.1 (A:75-144) A 4.8 1.1E+02 0.0079 19.6 0.8 13 132-144 19-31 (70)
10 d1qled_ f.23.8.1 (D:) Bacteria 4.7 2.3E+02 0.017 16.2 2.3 17 111-127 20-36 (43)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=9.82 E-value=31 Score=27.31 Aligned_cols=55 Identities=11% Similarity=0.063 Sum_probs=23.7
Q ss_pred ecchhhhhHHHHHHhhhhhhhcccCCCChhhHHHHHHHHHHHhheeeeeccccCC
Q 026475 146 VSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFITVLSGTIILHATREH 200 (238)
Q Consensus 146 VvPv~~v~ft~~~ii~g~I~f~e~~~~~~~~~~~f~~G~~ii~~GV~lLs~~~~~ 200 (238)
..-++...+.+..+++..+..--......|+......+....+.++..+-.-++.
T Consensus 153 ~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (447)
T d1pw4a_ 153 IVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDT 207 (447)
T ss_dssp HHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCS
T ss_pred cccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcccc
Confidence 4445566666666555432211111112333334444444444444444433333
No 2
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=8.70 E-value=83 Score=20.72 Aligned_cols=27 Identities=4% Similarity=0.115 Sum_probs=16.1
Q ss_pred ccCCCChhhHHHHHHHHHHHhheeeee
Q 026475 168 DWSGQDVSGIASEICGFITVLSGTIIL 194 (238)
Q Consensus 168 e~~~~~~~~~~~f~~G~~ii~~GV~lL 194 (238)
.|.++.|....+=+++++..+.|+.+.
T Consensus 56 GYGDi~P~t~~gr~~~~~~~~~Gi~~~ 82 (103)
T d1r3jc_ 56 GYGDLYPVTLWGRCVAVVVMVAGITSF 82 (103)
T ss_dssp CCSSSCCCSHHHHHHHHHHHHHHHHHH
T ss_pred ccCccccCChhHHHHHHHHHHHHHHHH
Confidence 444556655556666666666666554
No 3
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=5.88 E-value=2.5e+02 Score=23.16 Aligned_cols=22 Identities=18% Similarity=0.132 Sum_probs=16.5
Q ss_pred CcchhHHHHHHHHHHHHHHHHH
Q 026475 110 QIAYPQTWFFLTVAAVCVVTQL 131 (238)
Q Consensus 110 qf~~~~ty~~l~~lv~tai~Ql 131 (238)
||.+|..++++++.+++.+.+.
T Consensus 56 ~~~~~~~~iL~~aa~ls~~~~~ 77 (472)
T d1wpga4 56 QFEDLLVRILLLAACISFVLAW 77 (472)
T ss_dssp HTCSHHHHHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHHHHHH
Confidence 5778888888887777776654
No 4
>d2gmha2 d.16.1.8 (A:237-335) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}
Probab=5.79 E-value=3.3e+02 Score=17.97 Aligned_cols=29 Identities=7% Similarity=-0.106 Sum_probs=19.7
Q ss_pred eEEEEecCCCCCCCCHHHHHHHhcChhhH
Q 026475 22 VVIVIHAPQEHTPNSVQEIWALATQPDFL 50 (238)
Q Consensus 22 ~liV~~a~~~~~~~t~~eL~~~~~~~~Fl 50 (238)
+-+|+.-...++..++.|+.+.+++-+.+
T Consensus 52 lG~v~~Ld~~n~~~~p~~~lq~fK~HP~I 80 (99)
T d2gmha2 52 LGFVVGLDYQNPYLSPFREFQRWKHHPSI 80 (99)
T ss_dssp EEEEEETTCCCTTCCHHHHHHHHTTSTTT
T ss_pred EEEEechhHhCCCCCHHHHHHHHhcCHHH
Confidence 33344445566678999988988887664
No 5
>d1rzhh2 f.23.10.1 (H:11-35) Photosystem II reaction centre subunit H, transmembrane region {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=5.71 E-value=1.6e+02 Score=14.87 Aligned_cols=13 Identities=31% Similarity=0.465 Sum_probs=8.0
Q ss_pred chhHHHHHHHHHH
Q 026475 112 AYPQTWFFLTVAA 124 (238)
Q Consensus 112 ~~~~ty~~l~~lv 124 (238)
.-|.+|.++..++
T Consensus 6 aiw~fw~ffalli 18 (26)
T d1rzhh2 6 AIYSFWIFLAGLI 18 (26)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3567777666553
No 6
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=5.69 E-value=2e+02 Score=16.36 Aligned_cols=17 Identities=18% Similarity=0.327 Sum_probs=10.2
Q ss_pred cchhHHHHHHHHHHHHH
Q 026475 111 IAYPQTWFFLTVAAVCV 127 (238)
Q Consensus 111 f~~~~ty~~l~~lv~ta 127 (238)
|..|.+|..+++.++.+
T Consensus 19 Fik~~t~~~i~~i~~li 35 (42)
T d1m56d_ 19 FVRMVTWAAVVIVAALI 35 (42)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66777776655544443
No 7
>d1r1fa_ g.3.3.4 (A:) Palicourein {Palicourea condensata [TaxId: 272141]}
Probab=5.68 E-value=1.1e+02 Score=16.61 Aligned_cols=14 Identities=14% Similarity=0.162 Sum_probs=10.9
Q ss_pred CCCCcCceeeeccc
Q 026475 221 GAEEEHLITIHNSD 234 (238)
Q Consensus 221 ~~~~~~~~~~~~~~ 234 (238)
-||-+|+++-|+-|
T Consensus 23 cddrsdglckrngd 36 (37)
T d1r1fa_ 23 CDDRSDGLCKRNGD 36 (37)
T ss_dssp BCCSSSCCBCCSSC
T ss_pred ccCCccchhhccCC
Confidence 46778888888866
No 8
>d2npta1 d.15.2.2 (A:4-108) Mitogen activated protein kinase kinase 5, Map2k5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.17 E-value=71 Score=21.98 Aligned_cols=14 Identities=21% Similarity=0.404 Sum_probs=11.6
Q ss_pred CCCCcCceeeeccc
Q 026475 221 GAEEEHLITIHNSD 234 (238)
Q Consensus 221 ~~~~~~~~~~~~~~ 234 (238)
+|||-|-|+.|+-|
T Consensus 60 EDEdGDRITVRSDE 73 (105)
T d2npta1 60 EDEDGDRITVRSDE 73 (105)
T ss_dssp ECTTSCEEEECSHH
T ss_pred ccccCCEeEEccHH
Confidence 78888889999765
No 9
>d2ejna2 a.101.1.1 (A:75-144) Allergen Fel d I-B chain {Cat (Felis catus) [TaxId: 9685]}
Probab=4.75 E-value=1.1e+02 Score=19.58 Aligned_cols=13 Identities=31% Similarity=0.340 Sum_probs=10.8
Q ss_pred HHHHHhhccccce
Q 026475 132 NYLNKALDTFNAA 144 (238)
Q Consensus 132 ~~LNkAL~~fda~ 144 (238)
.+||.-|+.||++
T Consensus 19 ~~L~~~L~~fnaT 31 (70)
T d2ejna2 19 LLLDLSLTKVNAT 31 (70)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHhcCC
Confidence 3689999999986
No 10
>d1qled_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Paracoccus denitrificans [TaxId: 266]}
Probab=4.74 E-value=2.3e+02 Score=16.17 Aligned_cols=17 Identities=29% Similarity=0.348 Sum_probs=10.2
Q ss_pred cchhHHHHHHHHHHHHH
Q 026475 111 IAYPQTWFFLTVAAVCV 127 (238)
Q Consensus 111 f~~~~ty~~l~~lv~ta 127 (238)
|..|.+|..+++.++.+
T Consensus 20 Fi~~~t~~~i~~i~~li 36 (43)
T d1qled_ 20 FIKGATWVSILSIAVLV 36 (43)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 67777776655544433
Done!