Query 026478
Match_columns 238
No_of_seqs 217 out of 752
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 08:31:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026478.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026478hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5066 SCS2 VAMP-associated p 100.0 3.1E-30 6.6E-35 214.1 11.3 118 7-126 3-121 (242)
2 KOG0439 VAMP-associated protei 100.0 1E-27 2.2E-32 205.0 15.7 130 1-132 3-136 (218)
3 PF00635 Motile_Sperm: MSP (Ma 99.9 1.2E-23 2.6E-28 160.6 11.3 105 7-112 2-108 (109)
4 PF14874 PapD-like: Flagellar- 98.7 2.8E-07 6E-12 69.3 10.9 70 5-74 2-74 (102)
5 PF00345 PapD_N: Pili and flag 97.3 0.011 2.4E-07 45.7 12.7 109 7-128 2-119 (122)
6 PRK10884 SH3 domain-containing 96.6 0.0045 9.8E-08 52.8 5.8 68 168-235 122-191 (206)
7 PRK09918 putative fimbrial cha 94.5 2.1 4.5E-05 37.0 14.3 109 6-130 25-138 (230)
8 PRK09926 putative chaperone pr 94.2 1.5 3.3E-05 38.3 13.1 115 6-129 26-150 (246)
9 PRK15249 fimbrial chaperone pr 94.2 1.5 3.3E-05 38.5 13.0 114 6-129 29-153 (253)
10 PRK11385 putativi pili assembl 93.7 3 6.5E-05 36.3 13.7 110 6-129 27-148 (236)
11 PRK10132 hypothetical protein; 93.4 0.34 7.4E-06 37.2 6.6 24 215-238 84-107 (108)
12 PRK15211 fimbrial chaperone pr 93.1 4.7 0.0001 34.9 14.0 110 7-129 24-139 (229)
13 PF14646 MYCBPAP: MYCBP-associ 93.1 0.61 1.3E-05 44.0 9.1 75 13-91 238-325 (426)
14 PF07610 DUF1573: Protein of u 93.0 0.54 1.2E-05 30.0 6.1 43 28-71 2-45 (45)
15 PRK15299 fimbrial chaperone pr 92.8 3.5 7.7E-05 35.5 12.7 111 6-129 23-141 (227)
16 PRK15295 fimbrial assembly cha 92.6 6 0.00013 34.1 14.0 111 6-129 20-137 (226)
17 PF05957 DUF883: Bacterial pro 92.6 0.52 1.1E-05 34.9 6.4 23 216-238 72-94 (94)
18 PF10779 XhlA: Haemolysin XhlA 92.3 0.61 1.3E-05 32.8 6.1 22 215-236 50-71 (71)
19 PRK15192 fimbrial chaperone Bc 91.9 7.2 0.00015 33.9 13.6 106 7-129 24-143 (234)
20 PRK15290 lfpB fimbrial chapero 91.3 9.4 0.0002 33.4 14.5 111 7-129 39-157 (243)
21 PRK15246 fimbrial assembly cha 91.3 4.7 0.0001 35.0 11.8 114 6-129 11-134 (233)
22 PF11614 FixG_C: IG-like fold 91.0 1.1 2.5E-05 34.2 7.0 51 24-74 33-85 (118)
23 PF06005 DUF904: Protein of un 90.6 0.75 1.6E-05 32.7 5.1 38 168-205 8-45 (72)
24 PF04420 CHD5: CHD5-like prote 90.5 0.33 7.1E-06 39.8 3.7 42 171-212 40-93 (161)
25 PF06156 DUF972: Protein of un 89.2 0.87 1.9E-05 34.9 4.8 40 168-207 12-51 (107)
26 COG3121 FimC P pilus assembly 88.5 16 0.00034 31.7 13.8 111 7-129 29-146 (235)
27 PRK15188 fimbrial chaperone pr 88.5 16 0.00034 31.7 14.3 113 6-130 28-146 (228)
28 PRK15208 long polar fimbrial c 87.6 18 0.00038 31.2 13.8 112 6-129 22-139 (228)
29 PRK15195 fimbrial chaperone pr 87.4 18 0.00039 31.2 13.2 113 6-129 26-144 (229)
30 PRK15254 fimbrial chaperone pr 87.3 19 0.00041 31.4 14.2 110 6-129 17-134 (239)
31 COG3074 Uncharacterized protei 87.3 1.3 2.8E-05 31.2 4.2 34 169-202 9-42 (79)
32 PF02183 HALZ: Homeobox associ 86.0 3.4 7.4E-05 26.6 5.5 37 171-207 5-41 (45)
33 PRK13169 DNA replication intia 85.9 1.8 4E-05 33.2 5.0 33 172-204 23-55 (110)
34 PRK15422 septal ring assembly 85.7 1.6 3.4E-05 31.5 4.1 36 168-203 8-43 (79)
35 PRK15218 fimbrial chaperone pr 85.7 23 0.00049 30.6 14.5 111 7-129 20-140 (226)
36 PF06280 DUF1034: Fn3-like dom 83.8 3.5 7.7E-05 31.1 5.7 53 22-74 8-81 (112)
37 PRK15224 pili assembly chapero 83.4 22 0.00049 30.9 11.2 112 9-129 32-150 (237)
38 PRK10404 hypothetical protein; 83.3 6.5 0.00014 29.7 6.9 23 216-238 79-101 (101)
39 PRK00888 ftsB cell division pr 83.0 3.1 6.8E-05 31.6 5.1 31 169-199 32-62 (105)
40 COG3074 Uncharacterized protei 82.5 3.8 8.2E-05 28.9 4.8 37 166-202 27-63 (79)
41 PRK15274 putative periplasmic 81.8 36 0.00078 30.0 13.7 107 9-129 30-144 (257)
42 PRK10884 SH3 domain-containing 81.6 3.9 8.5E-05 34.9 5.7 63 170-235 131-195 (206)
43 TIGR02449 conserved hypothetic 81.2 4.7 0.0001 28.1 4.9 39 168-206 4-42 (65)
44 TIGR03079 CH4_NH3mon_ox_B meth 81.0 4 8.7E-05 37.7 5.8 54 20-73 280-354 (399)
45 PF04744 Monooxygenase_B: Mono 80.7 8 0.00017 35.8 7.6 65 7-73 249-335 (381)
46 PF02344 Myc-LZ: Myc leucine z 80.5 6.8 0.00015 23.2 4.7 26 181-206 4-29 (32)
47 PF04977 DivIC: Septum formati 80.4 4.6 0.0001 28.2 5.0 31 174-204 20-50 (80)
48 COG4575 ElaB Uncharacterized c 80.4 16 0.00034 27.8 7.9 24 215-238 81-104 (104)
49 PRK01844 hypothetical protein; 79.7 1.4 3E-05 31.3 1.9 22 216-237 5-26 (72)
50 PRK15422 septal ring assembly 79.6 4.8 0.0001 29.0 4.7 37 166-202 27-63 (79)
51 PRK00523 hypothetical protein; 79.6 1.5 3.2E-05 31.1 2.0 23 215-237 5-27 (72)
52 PF13807 GNVR: G-rich domain o 79.6 20 0.00043 25.6 8.3 17 219-235 60-76 (82)
53 PF06156 DUF972: Protein of un 79.5 4.6 0.0001 30.9 4.9 39 168-206 19-57 (107)
54 PF00170 bZIP_1: bZIP transcri 79.1 7.3 0.00016 26.5 5.4 34 173-206 28-61 (64)
55 PF11120 DUF2636: Protein of u 78.9 1.9 4E-05 29.8 2.3 20 218-237 7-26 (62)
56 PRK13169 DNA replication intia 78.0 5.4 0.00012 30.7 4.9 43 167-209 11-53 (110)
57 PF10633 NPCBM_assoc: NPCBM-as 78.0 4.1 8.9E-05 28.7 4.1 55 21-75 4-62 (78)
58 PF05377 FlaC_arch: Flagella a 77.3 11 0.00024 25.3 5.6 31 168-198 4-34 (55)
59 PF06005 DUF904: Protein of un 77.1 8.6 0.00019 27.3 5.4 32 171-202 25-56 (72)
60 PF02183 HALZ: Homeobox associ 77.1 3.6 7.9E-05 26.4 3.2 37 165-201 6-42 (45)
61 smart00340 HALZ homeobox assoc 77.0 7.9 0.00017 24.5 4.5 26 183-208 10-35 (44)
62 COG4467 Regulator of replicati 76.6 6 0.00013 30.2 4.7 40 168-207 12-51 (114)
63 PF15188 CCDC-167: Coiled-coil 76.4 8.6 0.00019 28.2 5.3 25 183-207 41-65 (85)
64 smart00338 BRLZ basic region l 76.4 9.2 0.0002 26.0 5.3 32 174-205 29-60 (65)
65 PRK15253 putative fimbrial ass 75.9 54 0.0012 28.6 14.3 109 9-129 37-155 (242)
66 PRK15285 putative fimbrial cha 75.0 58 0.0013 28.6 13.9 107 9-129 29-143 (250)
67 smart00809 Alpha_adaptinC2 Ada 74.7 18 0.00038 26.5 7.0 53 21-73 17-73 (104)
68 PF05506 DUF756: Domain of unk 72.7 15 0.00034 26.5 6.1 40 25-71 21-65 (89)
69 PF01166 TSC22: TSC-22/dip/bun 72.1 13 0.00027 25.3 4.8 33 171-210 14-46 (59)
70 PRK15233 putative fimbrial cha 71.7 70 0.0015 28.1 11.7 112 12-129 47-164 (246)
71 KOG4196 bZIP transcription fac 71.5 8.4 0.00018 30.4 4.5 37 168-204 78-114 (135)
72 PF01166 TSC22: TSC-22/dip/bun 70.8 12 0.00027 25.4 4.6 23 166-188 16-38 (59)
73 PF06072 Herpes_US9: Alphaherp 70.4 5.4 0.00012 27.2 2.8 18 220-237 41-58 (60)
74 TIGR03752 conj_TIGR03752 integ 70.3 11 0.00024 36.1 5.9 35 172-206 60-94 (472)
75 PF05377 FlaC_arch: Flagella a 70.0 12 0.00026 25.1 4.4 36 172-207 1-36 (55)
76 PF00927 Transglut_C: Transglu 69.6 20 0.00044 26.6 6.3 56 20-75 13-78 (107)
77 PRK00888 ftsB cell division pr 69.5 8.3 0.00018 29.3 4.1 35 172-206 28-62 (105)
78 KOG4343 bZIP transcription fac 69.2 17 0.00038 35.3 6.9 26 179-204 310-335 (655)
79 COG3763 Uncharacterized protei 68.9 6 0.00013 27.9 2.9 19 218-236 7-25 (71)
80 TIGR02209 ftsL_broad cell divi 68.2 15 0.00032 26.2 5.0 31 173-203 26-56 (85)
81 PF04977 DivIC: Septum formati 68.0 8.1 0.00018 26.9 3.6 38 168-205 21-58 (80)
82 COG5547 Small integral membran 67.9 5.8 0.00013 26.9 2.5 21 218-238 32-52 (62)
83 PRK14127 cell division protein 67.6 22 0.00048 27.3 6.1 42 168-209 27-68 (109)
84 PF07106 TBPIP: Tat binding pr 67.1 13 0.00027 30.4 5.0 16 171-186 86-101 (169)
85 PF11611 DUF4352: Domain of un 64.2 32 0.00069 25.7 6.5 53 21-73 35-101 (123)
86 smart00338 BRLZ basic region l 63.9 13 0.00029 25.2 3.9 32 176-207 24-55 (65)
87 PRK04406 hypothetical protein; 63.9 23 0.00049 25.2 5.2 43 166-208 13-55 (75)
88 PF07716 bZIP_2: Basic region 63.7 17 0.00038 23.8 4.3 30 177-206 24-53 (54)
89 PRK00736 hypothetical protein; 63.5 23 0.00049 24.7 5.1 42 166-207 7-48 (68)
90 PF07716 bZIP_2: Basic region 63.5 33 0.00072 22.4 5.7 29 172-200 26-54 (54)
91 PF04102 SlyX: SlyX; InterPro 62.4 22 0.00047 24.7 4.8 43 167-209 7-49 (69)
92 PF12325 TMF_TATA_bd: TATA ele 62.0 22 0.00047 27.7 5.2 37 168-204 20-56 (120)
93 TIGR03493 cellullose_BcsF cell 62.0 9.1 0.0002 26.3 2.6 20 218-237 7-26 (62)
94 PF04880 NUDE_C: NUDE protein, 61.7 4.6 0.0001 33.3 1.4 15 189-203 28-42 (166)
95 PRK00523 hypothetical protein; 61.0 10 0.00022 27.0 2.8 21 216-236 2-22 (72)
96 PRK00295 hypothetical protein; 61.0 26 0.00056 24.4 4.9 42 166-207 7-48 (68)
97 PRK02793 phi X174 lysis protei 59.7 30 0.00065 24.4 5.1 43 166-208 10-52 (72)
98 PF00170 bZIP_1: bZIP transcri 59.5 19 0.00041 24.4 4.1 33 175-207 23-55 (64)
99 PF03908 Sec20: Sec20; InterP 59.4 66 0.0014 23.4 7.8 16 222-237 75-90 (92)
100 PHA02414 hypothetical protein 59.3 59 0.0013 24.5 6.7 69 168-236 33-108 (111)
101 PRK04325 hypothetical protein; 58.8 30 0.00065 24.5 5.1 42 166-207 11-52 (74)
102 PRK02119 hypothetical protein; 58.2 33 0.00071 24.3 5.2 41 167-207 12-52 (73)
103 PF07407 Seadorna_VP6: Seadorn 57.7 16 0.00035 33.4 4.3 11 116-126 6-16 (420)
104 PF03173 CHB_HEX: Putative car 57.1 14 0.00031 30.3 3.6 34 40-73 69-104 (164)
105 PF07798 DUF1640: Protein of u 56.5 37 0.00079 28.0 6.0 15 221-235 160-174 (177)
106 PF06030 DUF916: Bacterial pro 56.4 92 0.002 24.1 8.8 27 17-43 22-48 (121)
107 PF02753 PapD_C: Pili assembly 56.4 12 0.00026 25.5 2.6 43 28-70 1-44 (68)
108 PF07334 IFP_35_N: Interferon- 56.3 26 0.00057 25.1 4.3 26 181-206 3-28 (76)
109 KOG3119 Basic region leucine z 55.7 26 0.00057 31.0 5.3 37 172-208 216-252 (269)
110 PF00553 CBM_2: Cellulose bind 55.6 33 0.00071 25.4 5.1 50 24-73 15-84 (101)
111 PF04728 LPP: Lipoprotein leuc 54.9 53 0.0012 22.1 5.4 33 170-202 9-41 (56)
112 PF02883 Alpha_adaptinC2: Adap 54.5 34 0.00075 25.5 5.2 73 21-94 23-101 (115)
113 PF04999 FtsL: Cell division p 54.2 34 0.00074 25.0 5.0 33 172-204 36-68 (97)
114 PF14235 DUF4337: Domain of un 54.2 30 0.00066 28.2 5.1 27 174-200 69-95 (157)
115 PF10205 KLRAQ: Predicted coil 54.0 33 0.00071 26.0 4.8 38 168-205 30-67 (102)
116 PRK14143 heat shock protein Gr 53.7 58 0.0013 28.5 7.0 39 170-208 66-104 (238)
117 PF12690 BsuPI: Intracellular 53.7 69 0.0015 23.0 6.4 21 24-44 2-22 (82)
118 TIGR03142 cytochro_ccmI cytoch 53.5 52 0.0011 25.1 6.1 10 193-202 61-70 (117)
119 PF12958 DUF3847: Protein of u 53.2 88 0.0019 23.0 7.0 32 173-204 3-34 (86)
120 COG1422 Predicted membrane pro 52.5 37 0.0008 28.9 5.4 24 171-194 72-95 (201)
121 PF11346 DUF3149: Protein of u 52.0 16 0.00034 23.2 2.4 18 220-237 19-36 (42)
122 PF09753 Use1: Membrane fusion 51.9 98 0.0021 26.8 8.3 22 214-235 226-247 (251)
123 PF14197 Cep57_CLD_2: Centroso 51.8 49 0.0011 23.2 5.1 15 193-207 48-62 (69)
124 PF10482 CtIP_N: Tumour-suppre 51.2 25 0.00055 27.2 3.8 26 176-201 94-119 (120)
125 PF04728 LPP: Lipoprotein leuc 50.9 48 0.0011 22.3 4.7 31 172-202 4-34 (56)
126 PF14257 DUF4349: Domain of un 50.9 96 0.0021 26.9 8.1 25 182-206 166-190 (262)
127 PRK02898 cobalt transport prot 50.3 9.1 0.0002 28.9 1.3 21 216-236 67-87 (100)
128 PF12709 Kinetocho_Slk19: Cent 50.3 58 0.0013 24.0 5.4 30 176-205 47-76 (87)
129 PF03904 DUF334: Domain of unk 50.2 38 0.00083 29.3 5.2 9 180-188 122-130 (230)
130 KOG4005 Transcription factor X 50.1 40 0.00086 29.6 5.2 26 172-197 91-116 (292)
131 KOG1962 B-cell receptor-associ 49.8 37 0.00081 29.2 5.1 23 180-202 174-196 (216)
132 TIGR02745 ccoG_rdxA_fixG cytoc 49.5 1.1E+02 0.0024 29.1 8.7 52 23-74 347-400 (434)
133 TIGR02894 DNA_bind_RsfA transc 49.5 50 0.0011 27.1 5.5 29 177-205 103-131 (161)
134 COG4026 Uncharacterized protei 49.4 28 0.0006 30.3 4.2 21 167-187 138-158 (290)
135 KOG4797 Transcriptional regula 49.3 47 0.001 25.5 4.9 29 179-207 68-96 (123)
136 PRK13922 rod shape-determining 49.0 45 0.00098 29.2 5.7 34 174-207 72-108 (276)
137 smart00637 CBD_II CBD_II domai 49.0 83 0.0018 22.6 6.3 48 24-71 8-75 (92)
138 PF14775 NYD-SP28_assoc: Sperm 48.7 39 0.00085 23.0 4.1 26 173-198 28-53 (60)
139 PRK14750 kdpF potassium-transp 48.5 27 0.00059 20.2 2.7 18 219-236 4-21 (29)
140 TIGR03752 conj_TIGR03752 integ 48.4 29 0.00063 33.3 4.6 32 168-199 63-94 (472)
141 PRK09413 IS2 repressor TnpA; R 47.8 46 0.00099 25.5 5.0 28 175-202 75-102 (121)
142 PF14197 Cep57_CLD_2: Centroso 47.8 57 0.0012 22.8 4.9 18 188-205 50-67 (69)
143 PF06645 SPC12: Microsomal sig 47.7 18 0.00039 25.8 2.4 18 219-236 15-32 (76)
144 PF08826 DMPK_coil: DMPK coile 47.7 73 0.0016 21.8 5.3 35 172-206 19-53 (61)
145 PF12718 Tropomyosin_1: Tropom 47.6 36 0.00077 27.2 4.4 42 166-207 16-57 (143)
146 PRK00846 hypothetical protein; 47.2 58 0.0013 23.4 5.0 42 166-207 15-56 (77)
147 PF06612 DUF1146: Protein of u 47.1 16 0.00035 23.7 1.9 20 217-236 25-44 (48)
148 PF05753 TRAP_beta: Translocon 47.1 1.1E+02 0.0023 25.5 7.4 53 20-73 36-97 (181)
149 PF14235 DUF4337: Domain of un 46.5 1.3E+02 0.0029 24.4 7.7 36 169-204 71-106 (157)
150 PF13600 DUF4140: N-terminal d 46.3 57 0.0012 24.1 5.2 32 172-203 71-102 (104)
151 PRK07075 isochorismate-pyruvat 45.9 1.2E+02 0.0027 22.6 7.3 34 166-199 10-43 (101)
152 PF04678 DUF607: Protein of un 45.5 91 0.002 25.7 6.7 10 189-198 68-77 (180)
153 COG2991 Uncharacterized protei 45.3 24 0.00051 25.1 2.6 18 221-238 10-27 (77)
154 PF01763 Herpes_UL6: Herpesvir 45.2 44 0.00095 32.9 5.4 40 169-208 368-407 (557)
155 PF12329 TMF_DNA_bd: TATA elem 45.0 62 0.0013 22.8 4.9 24 171-194 5-28 (74)
156 PF11772 EpuA: DNA-directed RN 45.0 13 0.00028 24.2 1.2 15 221-235 4-18 (47)
157 KOG4343 bZIP transcription fac 44.7 22 0.00047 34.7 3.1 34 175-208 299-332 (655)
158 PF09006 Surfac_D-trimer: Lung 44.7 81 0.0018 20.4 4.8 27 181-207 2-28 (46)
159 PF06305 DUF1049: Protein of u 44.5 27 0.00058 23.6 2.9 22 183-204 46-67 (68)
160 PF03302 VSP: Giardia variant- 44.2 13 0.00029 34.8 1.6 24 214-237 370-394 (397)
161 PF13815 Dzip-like_N: Iguana/D 44.2 61 0.0013 24.8 5.1 31 175-205 84-114 (118)
162 PF13815 Dzip-like_N: Iguana/D 43.7 35 0.00075 26.2 3.7 27 177-203 79-105 (118)
163 PF09738 DUF2051: Double stran 43.4 33 0.00071 31.1 4.0 39 166-204 86-124 (302)
164 cd07429 Cby_like Chibby, a nuc 42.8 64 0.0014 24.7 4.9 28 179-206 73-100 (108)
165 TIGR02449 conserved hypothetic 42.8 64 0.0014 22.4 4.5 33 170-202 20-52 (65)
166 PF10883 DUF2681: Protein of u 42.7 80 0.0017 23.2 5.2 31 172-202 24-54 (87)
167 PF13473 Cupredoxin_1: Cupredo 42.2 1.4E+02 0.0029 21.9 6.9 52 8-71 31-82 (104)
168 PRK09039 hypothetical protein; 41.9 39 0.00085 31.0 4.3 35 168-202 127-161 (343)
169 PF07963 N_methyl: Prokaryotic 41.9 38 0.00081 18.0 2.5 17 215-231 2-19 (20)
170 PRK13922 rod shape-determining 41.6 33 0.00071 30.1 3.7 35 168-202 73-110 (276)
171 PF03980 Nnf1: Nnf1 ; InterPr 41.2 71 0.0015 23.9 5.0 32 175-206 77-108 (109)
172 PF08172 CASP_C: CASP C termin 41.2 29 0.00064 30.4 3.2 30 168-197 97-126 (248)
173 TIGR02894 DNA_bind_RsfA transc 41.1 59 0.0013 26.7 4.7 31 172-202 112-142 (161)
174 PRK14160 heat shock protein Gr 40.9 56 0.0012 28.0 4.8 40 169-208 59-98 (211)
175 PF10224 DUF2205: Predicted co 40.8 65 0.0014 23.3 4.4 32 171-202 30-61 (80)
176 KOG0977 Nuclear envelope prote 40.7 49 0.0011 32.4 4.9 41 167-207 151-191 (546)
177 KOG4005 Transcription factor X 40.5 48 0.001 29.0 4.3 16 190-205 123-138 (292)
178 PRK10803 tol-pal system protei 40.3 63 0.0014 28.4 5.3 31 168-198 58-88 (263)
179 PF04111 APG6: Autophagy prote 40.1 72 0.0016 28.9 5.7 29 174-202 60-88 (314)
180 PRK00720 tatA twin arginine tr 39.7 31 0.00068 24.9 2.6 18 214-231 2-19 (78)
181 TIGR00219 mreC rod shape-deter 39.6 37 0.00079 30.3 3.7 10 197-206 96-105 (283)
182 PF07798 DUF1640: Protein of u 39.6 68 0.0015 26.3 5.1 32 171-202 58-90 (177)
183 PF14645 Chibby: Chibby family 39.6 60 0.0013 25.1 4.4 24 179-202 72-95 (116)
184 PRK14163 heat shock protein Gr 39.3 2.1E+02 0.0047 24.5 8.1 35 174-208 43-77 (214)
185 KOG4196 bZIP transcription fac 39.0 1.1E+02 0.0023 24.4 5.6 24 183-206 79-102 (135)
186 PF10031 DUF2273: Small integr 38.9 37 0.00081 22.3 2.7 19 218-236 32-50 (51)
187 PF11859 DUF3379: Protein of u 38.9 1.4E+02 0.0031 26.0 7.0 23 214-236 75-97 (232)
188 PF01105 EMP24_GP25L: emp24/gp 38.8 8.2 0.00018 30.8 -0.6 22 215-236 158-179 (183)
189 PRK13729 conjugal transfer pil 38.7 50 0.0011 31.8 4.5 38 171-208 76-120 (475)
190 KOG0980 Actin-binding protein 38.3 1.3E+02 0.0027 31.3 7.4 23 105-130 262-284 (980)
191 PRK09413 IS2 repressor TnpA; R 38.2 79 0.0017 24.1 5.0 30 179-208 72-101 (121)
192 PF12808 Mto2_bdg: Micro-tubul 38.2 71 0.0015 21.2 3.9 24 175-205 26-49 (52)
193 PF04111 APG6: Autophagy prote 38.1 70 0.0015 29.0 5.3 13 222-234 173-185 (314)
194 PF05529 Bap31: B-cell recepto 37.5 73 0.0016 26.4 5.0 25 183-207 159-183 (192)
195 COG4026 Uncharacterized protei 36.9 56 0.0012 28.5 4.1 33 168-200 132-164 (290)
196 KOG3156 Uncharacterized membra 36.7 90 0.002 26.8 5.3 37 171-207 101-138 (220)
197 PRK04561 tatA twin arginine tr 36.6 38 0.00083 24.2 2.6 18 214-231 2-19 (75)
198 TIGR02532 IV_pilin_GFxxxE prep 36.1 72 0.0016 17.7 3.3 21 214-234 2-23 (26)
199 PRK14748 kdpF potassium-transp 36.0 54 0.0012 19.0 2.7 17 220-236 5-21 (29)
200 TIGR01165 cbiN cobalt transpor 35.8 9.9 0.00021 28.2 -0.5 23 215-237 66-88 (91)
201 cd00632 Prefoldin_beta Prefold 35.7 81 0.0017 23.5 4.5 36 169-204 68-103 (105)
202 PF05529 Bap31: B-cell recepto 35.6 44 0.00096 27.7 3.4 31 174-204 157-187 (192)
203 PRK14139 heat shock protein Gr 35.4 1.8E+02 0.0039 24.4 7.0 34 174-207 35-68 (185)
204 PF08078 PsaX: PsaX family; I 35.4 57 0.0012 19.8 2.8 18 219-236 18-35 (37)
205 TIGR01803 CM-like chorismate m 35.2 1.6E+02 0.0035 20.8 6.6 33 168-200 3-35 (82)
206 PF04325 DUF465: Protein of un 35.1 1.2E+02 0.0026 19.3 5.0 34 171-204 6-46 (49)
207 PRK14127 cell division protein 34.9 1.4E+02 0.003 22.9 5.7 37 169-205 35-71 (109)
208 PF04859 DUF641: Plant protein 34.8 36 0.00079 27.0 2.6 30 168-197 98-127 (131)
209 KOG0860 Synaptobrevin/VAMP-lik 34.8 2.2E+02 0.0047 22.1 8.1 16 221-236 100-115 (116)
210 PF02404 SCF: Stem cell factor 34.6 13 0.00028 32.8 0.0 19 218-236 215-233 (273)
211 COG2919 Septum formation initi 34.6 87 0.0019 24.0 4.6 28 173-200 59-86 (117)
212 PRK15308 putative fimbrial pro 34.3 3.1E+02 0.0068 23.8 10.6 84 6-97 17-118 (234)
213 COG1930 CbiN ABC-type cobalt t 34.2 9.7 0.00021 28.3 -0.7 21 216-236 65-85 (97)
214 TIGR02209 ftsL_broad cell divi 34.2 75 0.0016 22.4 4.0 31 169-199 29-59 (85)
215 PF12325 TMF_TATA_bd: TATA ele 34.1 1.3E+02 0.0027 23.5 5.5 26 171-196 30-55 (120)
216 PF15168 TRIQK: Triple QxxK/R 34.0 1.8E+02 0.0039 20.9 5.7 10 223-232 55-64 (79)
217 KOG3488 Dolichol phosphate-man 33.9 40 0.00088 23.8 2.3 23 216-238 52-75 (81)
218 KOG0709 CREB/ATF family transc 33.8 55 0.0012 31.3 4.0 15 115-129 173-187 (472)
219 PF07106 TBPIP: Tat binding pr 33.4 98 0.0021 25.0 5.0 32 173-204 74-105 (169)
220 PRK03947 prefoldin subunit alp 33.3 1.1E+02 0.0024 23.8 5.2 38 169-206 99-136 (140)
221 PF15058 Speriolin_N: Sperioli 33.3 61 0.0013 27.4 3.7 30 173-202 7-36 (200)
222 PF05103 DivIVA: DivIVA protei 33.3 43 0.00092 25.6 2.7 28 175-202 22-49 (131)
223 COG4467 Regulator of replicati 33.1 82 0.0018 24.2 4.1 36 168-203 19-54 (114)
224 PF04201 TPD52: Tumour protein 33.0 1.2E+02 0.0025 25.0 5.2 20 174-193 32-51 (162)
225 PRK14161 heat shock protein Gr 32.9 94 0.002 25.9 4.8 31 176-206 24-54 (178)
226 PF11544 Spc42p: Spindle pole 32.8 1.6E+02 0.0036 21.1 5.3 36 171-206 19-54 (76)
227 KOG1962 B-cell receptor-associ 32.6 48 0.001 28.5 3.1 40 169-208 149-188 (216)
228 PRK02958 tatA twin arginine tr 32.5 48 0.001 23.6 2.6 18 214-231 2-19 (73)
229 TIGR02327 int_mem_ywzB conserv 32.0 48 0.001 23.2 2.5 21 216-236 31-51 (68)
230 PF14209 DUF4321: Domain of un 31.8 38 0.00083 22.0 1.9 15 222-236 35-49 (49)
231 PRK14140 heat shock protein Gr 31.8 1.2E+02 0.0026 25.6 5.3 34 174-207 40-73 (191)
232 COG4317 Uncharacterized protei 31.7 42 0.00091 24.5 2.2 15 221-235 31-45 (93)
233 PF08232 Striatin: Striatin fa 31.6 1.4E+02 0.003 23.6 5.4 30 173-202 27-56 (134)
234 PRK02898 cobalt transport prot 31.4 15 0.00032 27.8 -0.2 23 216-238 71-93 (100)
235 PF08946 Osmo_CC: Osmosensory 31.2 65 0.0014 20.8 2.8 22 169-190 17-38 (46)
236 PF10224 DUF2205: Predicted co 31.2 1.3E+02 0.0029 21.7 4.8 32 175-206 27-58 (80)
237 PF07705 CARDB: CARDB; InterP 31.2 1.8E+02 0.0039 20.3 5.7 54 21-74 18-72 (101)
238 COG0598 CorA Mg2+ and Co2+ tra 31.1 3.1E+02 0.0068 24.6 8.4 22 215-237 297-318 (322)
239 COG5336 Uncharacterized protei 31.1 47 0.001 25.6 2.5 22 214-235 70-91 (116)
240 TIGR00219 mreC rod shape-deter 31.1 1.2E+02 0.0026 27.0 5.5 34 169-202 71-108 (283)
241 PRK14158 heat shock protein Gr 30.9 1.3E+02 0.0028 25.4 5.4 36 172-207 41-76 (194)
242 PF08614 ATG16: Autophagy prot 30.9 1.2E+02 0.0027 25.2 5.3 36 168-203 106-141 (194)
243 PRK11637 AmiB activator; Provi 30.9 1.1E+02 0.0023 28.8 5.5 8 190-197 108-115 (428)
244 PF10883 DUF2681: Protein of u 30.9 1.4E+02 0.003 22.0 4.9 23 180-202 25-47 (87)
245 PF12709 Kinetocho_Slk19: Cent 30.8 1.4E+02 0.003 22.0 4.8 24 184-207 48-71 (87)
246 PF10473 CENP-F_leu_zip: Leuci 30.2 1.3E+02 0.0028 24.1 5.0 15 183-197 71-85 (140)
247 PTZ00454 26S protease regulato 30.2 82 0.0018 29.5 4.5 36 171-206 29-64 (398)
248 PRK07857 hypothetical protein; 30.1 1.9E+02 0.0041 22.1 5.7 32 167-198 31-62 (106)
249 PF10473 CENP-F_leu_zip: Leuci 30.0 1.4E+02 0.0031 23.9 5.2 31 175-205 49-79 (140)
250 PF11932 DUF3450: Protein of u 29.9 1.1E+02 0.0024 26.5 5.0 23 175-197 53-75 (251)
251 TIGR03689 pup_AAA proteasome A 29.9 67 0.0015 31.3 4.0 38 168-205 5-42 (512)
252 PF06483 ChiC: Chitinase C; I 29.8 61 0.0013 27.1 3.2 25 36-71 116-140 (180)
253 PF08172 CASP_C: CASP C termin 29.8 1E+02 0.0022 27.0 4.8 33 168-200 90-122 (248)
254 PRK14162 heat shock protein Gr 29.6 1.5E+02 0.0032 25.1 5.6 32 175-206 43-74 (194)
255 COG2433 Uncharacterized conser 29.6 1E+02 0.0022 30.6 5.1 28 175-202 426-453 (652)
256 COG3121 FimC P pilus assembly 29.5 1.3E+02 0.0028 26.0 5.3 43 26-70 165-209 (235)
257 PRK10803 tol-pal system protei 29.4 85 0.0018 27.6 4.3 32 174-205 57-88 (263)
258 PF04639 Baculo_E56: Baculovir 29.3 38 0.00082 30.4 2.0 24 214-237 276-299 (305)
259 PRK05771 V-type ATP synthase s 29.2 84 0.0018 31.2 4.7 36 171-206 93-128 (646)
260 PF01920 Prefoldin_2: Prefoldi 29.1 99 0.0022 22.4 4.1 31 169-199 67-97 (106)
261 KOG4112 Signal peptidase subun 28.9 61 0.0013 24.3 2.7 20 216-235 27-46 (101)
262 COG2919 Septum formation initi 28.9 93 0.002 23.9 3.9 36 172-207 51-86 (117)
263 COG1792 MreC Cell shape-determ 28.8 90 0.002 27.9 4.4 27 176-202 81-107 (284)
264 PRK14151 heat shock protein Gr 28.8 1.5E+02 0.0032 24.6 5.4 28 179-206 28-55 (176)
265 PF14796 AP3B1_C: Clathrin-ada 28.7 2.3E+02 0.005 22.8 6.3 59 13-71 72-138 (145)
266 TIGR03007 pepcterm_ChnLen poly 28.6 3.4E+02 0.0074 25.7 8.6 13 221-233 417-429 (498)
267 COG1730 GIM5 Predicted prefold 28.6 1.3E+02 0.0029 24.1 4.9 39 168-206 98-136 (145)
268 PF13600 DUF4140: N-terminal d 28.5 1.5E+02 0.0032 21.7 5.0 27 169-195 75-101 (104)
269 PRK02119 hypothetical protein; 28.5 1.6E+02 0.0036 20.6 4.8 33 172-204 24-56 (73)
270 PRK14148 heat shock protein Gr 28.2 1.4E+02 0.0031 25.2 5.3 35 173-207 42-76 (195)
271 PF04880 NUDE_C: NUDE protein, 28.1 23 0.00051 29.2 0.5 19 183-201 29-47 (166)
272 PF09640 DUF2027: Domain of un 28.0 1.1E+02 0.0024 25.2 4.3 68 24-98 18-85 (162)
273 PF04899 MbeD_MobD: MbeD/MobD 27.9 98 0.0021 21.8 3.5 16 183-198 47-62 (70)
274 COG2841 Uncharacterized protei 27.8 1.9E+02 0.0042 20.4 4.9 34 172-205 25-67 (72)
275 PRK14154 heat shock protein Gr 27.8 1.6E+02 0.0034 25.3 5.4 28 179-206 60-87 (208)
276 TIGR03784 marine_sortase sorta 27.7 3.2E+02 0.0069 22.5 7.2 59 26-90 113-173 (174)
277 PF13205 Big_5: Bacterial Ig-l 27.3 2.3E+02 0.0051 20.2 7.2 56 13-71 26-84 (107)
278 PRK14147 heat shock protein Gr 27.3 1.8E+02 0.004 23.9 5.7 26 180-205 27-52 (172)
279 KOG3156 Uncharacterized membra 27.2 60 0.0013 27.9 2.8 21 216-236 198-218 (220)
280 PRK14155 heat shock protein Gr 27.2 1.4E+02 0.0031 25.5 5.1 26 180-205 22-47 (208)
281 PF11365 DUF3166: Protein of u 27.1 1.4E+02 0.0031 22.3 4.5 41 168-208 5-45 (96)
282 PF04102 SlyX: SlyX; InterPro 27.1 1.3E+02 0.0029 20.7 4.1 34 172-205 19-52 (69)
283 KOG3208 SNARE protein GS28 [In 26.9 3.3E+02 0.0072 23.6 7.2 21 214-234 210-230 (231)
284 KOG3863 bZIP transcription fac 26.8 1.2E+02 0.0027 30.1 5.1 34 174-207 514-547 (604)
285 TIGR01242 26Sp45 26S proteasom 26.7 1.1E+02 0.0024 27.9 4.7 35 171-205 6-40 (364)
286 PF09716 ETRAMP: Malarial earl 26.7 1.5E+02 0.0032 21.4 4.4 22 216-237 58-79 (84)
287 PF07664 FeoB_C: Ferrous iron 26.6 79 0.0017 20.7 2.8 16 222-237 7-22 (54)
288 PF11382 DUF3186: Protein of u 26.6 99 0.0021 27.9 4.3 27 176-202 37-63 (308)
289 PF09489 CbtB: Probable cobalt 26.5 82 0.0018 21.1 2.8 19 218-236 13-31 (54)
290 COG4836 Predicted membrane pro 26.3 90 0.002 22.1 3.0 22 214-235 37-58 (77)
291 PRK00295 hypothetical protein; 26.2 2.3E+02 0.0049 19.6 5.2 34 172-205 20-53 (68)
292 COG2433 Uncharacterized conser 26.0 1.5E+02 0.0033 29.5 5.6 39 169-207 427-465 (652)
293 PF12606 RELT: Tumour necrosis 25.9 89 0.0019 20.5 2.8 18 220-237 9-26 (50)
294 PF05103 DivIVA: DivIVA protei 25.8 21 0.00045 27.4 -0.2 38 168-205 22-59 (131)
295 PRK10722 hypothetical protein; 25.6 2.3E+02 0.005 24.9 6.1 29 177-205 175-203 (247)
296 PTZ00382 Variant-specific surf 25.6 37 0.00081 25.3 1.1 23 215-237 70-93 (96)
297 PRK02793 phi X174 lysis protei 25.5 2E+02 0.0044 20.1 4.9 33 173-205 24-56 (72)
298 PF08614 ATG16: Autophagy prot 25.4 1.4E+02 0.003 24.8 4.7 33 171-203 123-155 (194)
299 TIGR03017 EpsF chain length de 25.4 5E+02 0.011 24.0 9.0 15 220-234 399-413 (444)
300 PRK01833 tatA twin arginine tr 25.3 76 0.0016 22.6 2.6 18 214-231 2-19 (74)
301 PF08826 DMPK_coil: DMPK coile 25.3 1.4E+02 0.003 20.4 3.8 18 188-205 42-59 (61)
302 TIGR01005 eps_transp_fam exopo 25.1 4E+02 0.0086 26.9 8.7 14 220-233 433-446 (754)
303 PF10498 IFT57: Intra-flagella 25.0 1E+02 0.0023 28.5 4.2 32 171-202 287-318 (359)
304 PF05308 Mito_fiss_reg: Mitoch 24.9 1.1E+02 0.0023 27.1 4.0 24 174-197 118-141 (253)
305 PF03168 LEA_2: Late embryogen 24.9 1.7E+02 0.0036 20.6 4.6 45 27-71 1-51 (101)
306 PF06376 DUF1070: Protein of u 24.9 86 0.0019 19.0 2.4 17 220-236 18-34 (34)
307 PF12751 Vac7: Vacuolar segreg 24.8 67 0.0015 30.1 2.9 20 218-237 307-326 (387)
308 COG3879 Uncharacterized protei 24.8 1.8E+02 0.004 25.6 5.4 39 170-208 63-105 (247)
309 PF09813 Coiled-coil_56: Coile 24.8 3.1E+02 0.0067 20.7 6.3 17 220-236 52-68 (100)
310 KOG1666 V-SNARE [Intracellular 24.8 2.4E+02 0.0053 24.3 6.0 16 190-205 158-173 (220)
311 TIGR01799 CM_T chorismate muta 24.8 2.6E+02 0.0056 19.8 7.4 33 168-200 3-35 (83)
312 TIGR02338 gimC_beta prefoldin, 24.6 1.5E+02 0.0033 22.2 4.4 33 169-201 72-104 (110)
313 PHA03029 hypothetical protein; 24.6 92 0.002 22.3 2.9 17 220-236 17-33 (92)
314 PF14962 AIF-MLS: Mitochondria 24.5 25 0.00054 29.4 0.0 36 203-238 29-66 (180)
315 TIGR01242 26Sp45 26S proteasom 24.4 1.7E+02 0.0038 26.6 5.6 35 175-209 3-37 (364)
316 PF15035 Rootletin: Ciliary ro 24.4 2.2E+02 0.0047 23.8 5.6 33 172-204 75-107 (182)
317 PRK07857 hypothetical protein; 24.3 2.5E+02 0.0054 21.4 5.4 37 171-207 28-64 (106)
318 KOG2264 Exostosin EXT1L [Signa 24.1 79 0.0017 31.3 3.2 38 167-204 96-133 (907)
319 cd04766 HTH_HspR Helix-Turn-He 24.1 1.7E+02 0.0037 21.0 4.4 17 190-206 70-86 (91)
320 PF12711 Kinesin-relat_1: Kine 24.0 2.4E+02 0.0052 20.7 5.1 33 174-206 27-65 (86)
321 KOG1769 Ubiquitin-like protein 24.0 99 0.0021 23.3 3.1 24 24-47 19-42 (99)
322 PF01025 GrpE: GrpE; InterPro 24.0 3.7E+02 0.008 21.3 8.3 36 167-202 14-49 (165)
323 PF09304 Cortex-I_coil: Cortex 23.9 2.6E+02 0.0056 21.4 5.4 28 175-202 41-68 (107)
324 PF11180 DUF2968: Protein of u 23.9 2.4E+02 0.0052 23.9 5.7 33 175-207 151-183 (192)
325 PF11688 DUF3285: Protein of u 23.7 1.3E+02 0.0029 19.1 3.2 20 214-233 19-40 (45)
326 KOG4452 Predicted membrane pro 23.6 1.2E+02 0.0027 21.3 3.3 27 209-235 11-37 (79)
327 PRK11876 petM cytochrome b6-f 23.6 1.1E+02 0.0024 18.2 2.6 16 222-237 13-28 (32)
328 PF10205 KLRAQ: Predicted coil 23.6 2.5E+02 0.0055 21.3 5.3 34 171-204 40-73 (102)
329 PF02996 Prefoldin: Prefoldin 23.4 1.6E+02 0.0034 22.0 4.3 24 174-197 87-110 (120)
330 PF09789 DUF2353: Uncharacteri 23.4 1.4E+02 0.0031 27.2 4.6 41 171-211 72-112 (319)
331 TIGR01167 LPXTG_anchor LPXTG-m 23.4 1.3E+02 0.0027 17.2 3.0 17 219-236 13-29 (34)
332 PRK13729 conjugal transfer pil 23.3 1.4E+02 0.003 28.9 4.7 41 167-207 79-126 (475)
333 PF11853 DUF3373: Protein of u 23.3 74 0.0016 30.8 2.9 26 179-204 32-57 (489)
334 PF11027 DUF2615: Protein of u 23.1 1.2E+02 0.0027 23.0 3.6 23 214-236 51-73 (103)
335 PF12768 Rax2: Cortical protei 23.0 71 0.0015 28.5 2.6 20 218-237 238-257 (281)
336 smart00605 CW CW domain. 23.0 1.1E+02 0.0023 22.2 3.2 22 27-48 58-80 (94)
337 PF10226 DUF2216: Uncharacteri 23.0 2.4E+02 0.0051 23.9 5.5 20 186-205 56-75 (195)
338 PF04888 SseC: Secretion syste 22.9 3.6E+02 0.0078 23.9 7.2 11 193-203 34-44 (306)
339 PF07225 NDUF_B4: NADH-ubiquin 22.9 3.6E+02 0.0077 21.2 6.2 15 222-236 88-102 (125)
340 COG5570 Uncharacterized small 22.9 62 0.0013 21.5 1.6 18 189-206 37-54 (57)
341 cd06409 PB1_MUG70 The MUG70 pr 22.9 57 0.0012 23.9 1.6 22 39-60 2-25 (86)
342 PF11668 Gp_UL130: HCMV glycop 22.9 2E+02 0.0043 23.4 4.8 43 14-56 102-154 (156)
343 PF08277 PAN_3: PAN-like domai 22.9 1E+02 0.0022 20.7 2.9 19 24-42 53-71 (71)
344 cd00890 Prefoldin Prefoldin is 22.8 1.8E+02 0.0039 21.9 4.6 28 172-199 95-122 (129)
345 KOG0483 Transcription factor H 22.8 1.7E+02 0.0036 24.9 4.6 35 172-206 106-140 (198)
346 PF07407 Seadorna_VP6: Seadorn 22.7 87 0.0019 28.8 3.1 24 181-204 35-58 (420)
347 KOG4591 Uncharacterized conser 22.6 1.9E+02 0.0041 25.0 4.9 26 182-207 7-32 (280)
348 PF08781 DP: Transcription fac 22.5 2.3E+02 0.0049 22.8 5.1 6 215-220 54-59 (142)
349 PF07926 TPR_MLP1_2: TPR/MLP1/ 22.5 2.8E+02 0.006 21.5 5.7 30 173-202 5-34 (132)
350 PRK00846 hypothetical protein; 22.4 2.7E+02 0.0058 20.0 5.0 33 173-205 29-61 (77)
351 PHA02657 hypothetical protein; 22.4 99 0.0021 22.7 2.7 18 219-236 32-49 (95)
352 PF09726 Macoilin: Transmembra 22.3 1.5E+02 0.0033 30.0 5.0 37 171-207 545-581 (697)
353 PF13870 DUF4201: Domain of un 22.3 2.1E+02 0.0045 23.3 5.1 30 175-204 102-131 (177)
354 PF11932 DUF3450: Protein of u 22.3 1.7E+02 0.0037 25.3 4.8 33 171-203 56-88 (251)
355 PF12777 MT: Microtubule-bindi 22.3 1.6E+02 0.0035 26.8 4.8 33 170-202 241-273 (344)
356 KOG0804 Cytoplasmic Zn-finger 22.2 1.7E+02 0.0036 28.1 4.9 32 171-202 382-413 (493)
357 COG5415 Predicted integral mem 22.1 5.2E+02 0.011 22.4 7.9 64 171-234 15-85 (251)
358 PF11382 DUF3186: Protein of u 22.0 1.9E+02 0.004 26.1 5.1 25 181-205 35-59 (308)
359 PRK00736 hypothetical protein; 21.9 2.8E+02 0.006 19.1 4.9 33 172-204 20-52 (68)
360 PF10342 GPI-anchored: Ser-Thr 21.9 2.9E+02 0.0062 19.3 7.0 59 11-70 14-77 (93)
361 PRK10722 hypothetical protein; 21.9 2.4E+02 0.0053 24.8 5.5 34 175-208 162-199 (247)
362 PRK13673 hypothetical protein; 21.7 1.7E+02 0.0037 22.8 4.1 35 199-235 77-111 (118)
363 PF10186 Atg14: UV radiation r 21.7 1.9E+02 0.004 25.1 5.0 20 173-192 72-91 (302)
364 PRK15249 fimbrial chaperone pr 21.7 2E+02 0.0044 25.1 5.2 42 27-69 177-219 (253)
365 PF11906 DUF3426: Protein of u 21.7 2.1E+02 0.0045 22.4 4.8 28 46-73 107-136 (149)
366 PF08402 TOBE_2: TOBE domain; 21.6 2.4E+02 0.0053 18.4 7.3 65 7-71 1-69 (75)
367 KOG1655 Protein involved in va 21.6 2.1E+02 0.0046 24.4 4.9 23 167-189 29-51 (218)
368 PF11598 COMP: Cartilage oligo 21.6 2.3E+02 0.0051 18.1 4.3 19 172-190 9-27 (45)
369 PF00769 ERM: Ezrin/radixin/mo 21.4 2.2E+02 0.0048 24.8 5.3 39 168-206 79-117 (246)
370 PF06738 DUF1212: Protein of u 21.4 2.6E+02 0.0057 22.7 5.6 14 222-235 108-121 (193)
371 PRK07248 hypothetical protein; 21.3 1.5E+02 0.0031 21.3 3.6 34 167-200 4-37 (87)
372 TIGR01807 CM_P2 chorismate mut 21.1 1.5E+02 0.0033 20.6 3.5 33 168-200 3-35 (76)
373 PRK14146 heat shock protein Gr 21.1 2.3E+02 0.0051 24.3 5.3 32 176-207 59-90 (215)
374 PF08041 PetM: PetM family of 21.1 1.5E+02 0.0032 17.6 2.8 16 221-236 10-25 (31)
375 PRK14141 heat shock protein Gr 21.1 2.1E+02 0.0046 24.5 5.0 25 181-205 41-65 (209)
376 PF10161 DDDD: Putative mitoch 21.1 20 0.00043 25.9 -1.1 24 215-238 36-59 (79)
377 PF08961 DUF1875: Domain of un 21.0 32 0.0007 29.7 0.0 34 171-204 129-162 (243)
378 PRK14144 heat shock protein Gr 21.0 2.6E+02 0.0057 23.7 5.5 32 175-206 49-80 (199)
379 PRK04406 hypothetical protein; 21.0 3E+02 0.0066 19.4 5.0 32 173-204 27-58 (75)
380 TIGR02230 ATPase_gene1 F0F1-AT 21.0 1.2E+02 0.0026 22.9 3.1 12 222-233 78-89 (100)
381 PRK14153 heat shock protein Gr 20.9 1.8E+02 0.004 24.6 4.5 33 175-207 37-69 (194)
382 PF09304 Cortex-I_coil: Cortex 20.9 2.6E+02 0.0056 21.4 4.9 39 168-206 13-51 (107)
383 PRK03947 prefoldin subunit alp 20.9 2.7E+02 0.0059 21.6 5.3 35 171-205 6-40 (140)
384 PF10939 DUF2631: Protein of u 20.8 89 0.0019 21.7 2.2 17 222-238 35-51 (65)
385 PRK14145 heat shock protein Gr 20.7 2.7E+02 0.0058 23.6 5.5 34 174-207 48-81 (196)
386 PRK14160 heat shock protein Gr 20.7 2.5E+02 0.0054 24.1 5.3 22 177-198 60-81 (211)
387 PRK01470 tatA twin arginine tr 20.7 1.1E+02 0.0023 20.2 2.4 16 215-230 2-17 (51)
388 PF11853 DUF3373: Protein of u 20.6 1E+02 0.0022 29.9 3.3 21 186-206 32-52 (489)
389 TIGR03592 yidC_oxa1_cterm memb 20.4 4.1E+02 0.009 21.7 6.6 32 172-206 30-61 (181)
390 PF04340 DUF484: Protein of un 20.3 1.4E+02 0.003 25.4 3.8 21 186-206 48-68 (225)
391 KOG4797 Transcriptional regula 20.3 1.6E+02 0.0036 22.6 3.7 26 173-198 69-94 (123)
392 COG3771 Predicted membrane pro 20.3 1E+02 0.0023 22.7 2.5 16 220-235 44-59 (97)
393 COG2882 FliJ Flagellar biosynt 20.3 2.5E+02 0.0054 22.7 5.0 46 173-218 18-63 (148)
394 PF10146 zf-C4H2: Zinc finger- 20.2 2.6E+02 0.0057 24.2 5.5 38 173-210 34-71 (230)
395 TIGR01791 CM_archaeal chorisma 20.2 1.8E+02 0.004 20.5 3.9 33 168-200 3-35 (83)
396 PRK06285 chorismate mutase; Pr 20.1 3.6E+02 0.0077 19.7 7.0 35 166-200 9-43 (96)
397 PF05781 MRVI1: MRVI1 protein; 20.1 70 0.0015 31.2 2.0 17 220-236 487-503 (538)
398 PF08138 Sex_peptide: Sex pept 20.1 35 0.00075 22.8 0.0 18 216-233 3-20 (56)
399 PF10458 Val_tRNA-synt_C: Valy 20.1 2.6E+02 0.0057 18.9 4.5 18 177-194 3-20 (66)
400 PRK15192 fimbrial chaperone Bc 20.0 2.3E+02 0.005 24.6 5.1 39 27-69 163-202 (234)
No 1
>COG5066 SCS2 VAMP-associated protein involved in inositol metabolism [Intracellular trafficking and secretion]
Probab=99.97 E-value=3.1e-30 Score=214.10 Aligned_cols=118 Identities=40% Similarity=0.632 Sum_probs=109.2
Q ss_pred eEEeCCeeeecccCCCceeEEEEEEcCCCCeEEEEEeecCCCcEEEeCCceeeCCCCEEEEEEEecccccCC-CCCCCCC
Q 026478 7 VNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTVTMQAQKEAP-PDFQCKD 85 (238)
Q Consensus 7 L~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~VrP~~G~I~P~~s~~V~V~lq~~~~~p-~~~~~kd 85 (238)
|+++|. +.|..|++...++.+.|.|++.++|+||||||+|+.||||||.|+|.|++++.|+|+||++++.| +|.+|+|
T Consensus 3 veisp~-~~fy~Plt~~ske~~sv~NnspepvgfKVKTTaPK~YcVRPN~g~Iep~stv~VeVilq~l~eEpapdfKCrd 81 (242)
T COG5066 3 VEISPQ-TTFYVPLTNKSKEMFSVQNNSPEPVGFKVKTTAPKDYCVRPNMGLIEPMSTVEVEVILQGLTEEPAPDFKCRD 81 (242)
T ss_pred eEecCc-eEEecccccccceeeEeecCCCCceeEEeeccCCcceeEcCCCceeccCCeeEEEEEeeccccCCCCCccccc
Confidence 556664 55666999999999999999999999999999999999999999999999999999999999887 7999999
Q ss_pred eEEEEEEeCCCCCCcccCCCCcccccCCCeeEEEEeEEEEe
Q 026478 86 KFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYI 126 (238)
Q Consensus 86 KFlVqs~~v~~~~~~~d~~~~~f~~~~~~~i~~~kL~v~~~ 126 (238)
|||||++..+.+..-.|+ .++|+..++.-|.++||||+|.
T Consensus 82 KFLiqs~~~~~~l~g~d~-ad~wt~~sk~~i~~rkIrcvys 121 (242)
T COG5066 82 KFLIQSYRFDWRLSGSDF-ADHWTSSSKKPIWTRKIRCVYS 121 (242)
T ss_pred eeEEEEeccChhhccchH-HHHHHhhccccchhhheeEEee
Confidence 999999999988777888 8999999888899999999998
No 2
>KOG0439 consensus VAMP-associated protein involved in inositol metabolism [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1e-27 Score=205.03 Aligned_cols=130 Identities=45% Similarity=0.754 Sum_probs=115.3
Q ss_pred CCCCCceEEeC-CeeeecccCCCceeEEEEEEcCCCCeEEEEEeecCCCcEEEeCCceeeCCCCEEEEEEEecccccCCC
Q 026478 1 MSTGDLVNIQP-SELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTVTMQAQKEAPP 79 (238)
Q Consensus 1 m~~~~lL~i~P-~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~VrP~~G~I~P~~s~~V~V~lq~~~~~p~ 79 (238)
|+.+.+|.|+| .+|.|++++++++.+.|+|+|+++.++|||||||+|++||||||.|+|.||++++|.|++|+....|.
T Consensus 3 ~~~~~~l~i~P~~~l~F~~~~~~~~~~~l~l~N~t~~~vaFKvktT~p~~y~VrP~~G~i~p~~t~~i~v~~q~~~~~P~ 82 (218)
T KOG0439|consen 3 LETESLLEIEPSDELVFPLPLNEQVKCSLTLKNPTKLRVAFKVKTTAPKLYCVRPNGGVIDPGSTVEIEVTHQPFEKSPP 82 (218)
T ss_pred ccccCccccCCCceEEeccCCCceEEEEEEEecCCCCceEEEEEcCCCCeEEEcCCcceECCCCcEEEEEEeccCccCch
Confidence 34567999999 58999999998999999999999999999999999999999999999999999999999999877788
Q ss_pred CCCCCCeEEEEEEeCCCCCCcccCCCCcccccC--CCeeEEEEeEEEEe-cCCCCC
Q 026478 80 DFQCKDKFLLLSVVAPDGATAKDIGPDMFTKED--GKVVEEFKLRVVYI-PANPPS 132 (238)
Q Consensus 80 ~~~~kdKFlVqs~~v~~~~~~~d~~~~~f~~~~--~~~i~~~kL~v~~~-p~~~~s 132 (238)
|++|+|||+||++.++.+ +..++ .++|.... +..+.+.+++|.|+ |..+++
T Consensus 83 d~~~r~kF~v~~~~~~~~-~~~~~-~~~~~~~k~~~~~~~~~k~~~~~~~~~~~~~ 136 (218)
T KOG0439|consen 83 DFKSRHKFLIQSLKAPPP-TTRDV-VDLWKFQKETPKESFETKLRVVFVAPTETDS 136 (218)
T ss_pred hhcccceEEEEEEecCCc-cccch-hhhccccccccccccceeeEEEeeCCCCCcc
Confidence 989999999999999986 33354 67888776 78899999999999 444433
No 3
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=99.90 E-value=1.2e-23 Score=160.59 Aligned_cols=105 Identities=42% Similarity=0.665 Sum_probs=83.6
Q ss_pred eEEeCC-eeeecccCCCceeEEEEEEcCCCCeEEEEEeecCCCcEEEeCCceeeCCCCEEEEEEEecccccCCCCCCCCC
Q 026478 7 VNIQPS-ELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTVTMQAQKEAPPDFQCKD 85 (238)
Q Consensus 7 L~i~P~-eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~VrP~~G~I~P~~s~~V~V~lq~~~~~p~~~~~kd 85 (238)
|.|+|. .|.|+.++++...+.|+|+|+++++||||||||+|.+|+|+|+.|+|.||+++.|.|++++....+.+ ..+|
T Consensus 2 l~v~P~~~i~F~~~~~~~~~~~l~l~N~s~~~i~fKiktt~~~~y~v~P~~G~i~p~~~~~i~I~~~~~~~~~~~-~~~d 80 (109)
T PF00635_consen 2 LSVEPSELIFFNAPFNKQQSCELTLTNPSDKPIAFKIKTTNPNRYRVKPSYGIIEPGESVEITITFQPFDFEPSN-KKKD 80 (109)
T ss_dssp CEEESSSEEEEESSTSS-EEEEEEEEE-SSSEEEEEEEES-TTTEEEESSEEEE-TTEEEEEEEEE-SSSTTTTS-TSSE
T ss_pred eEEeCCcceEEcCCCCceEEEEEEEECCCCCcEEEEEEcCCCceEEecCCCEEECCCCEEEEEEEEEecccCCCC-CCCC
Confidence 789997 79999999999999999999999999999999999999999999999999999999999997654433 2499
Q ss_pred eEEEEEEeCCCCCC-cccCCCCcccccC
Q 026478 86 KFLLLSVVAPDGAT-AKDIGPDMFTKED 112 (238)
Q Consensus 86 KFlVqs~~v~~~~~-~~d~~~~~f~~~~ 112 (238)
||+|+++.++++.. ..+....+|++..
T Consensus 81 kf~I~~~~~~~~~~~~~~~~~~~~~~~~ 108 (109)
T PF00635_consen 81 KFLIQSIVVPDNATDPKKDFKQIWKNGK 108 (109)
T ss_dssp EEEEEEEEE-TT-SSSHHHHHCCHHHSS
T ss_pred EEEEEEEEcCCCccchhhhHHHHHhccC
Confidence 99999999987653 2122266787653
No 4
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=98.69 E-value=2.8e-07 Score=69.31 Aligned_cols=70 Identities=24% Similarity=0.413 Sum_probs=61.6
Q ss_pred CceEEeCCeeeecc-cCCCceeEEEEEEcCCCCeEEEEEeecC--CCcEEEeCCceeeCCCCEEEEEEEeccc
Q 026478 5 DLVNIQPSELKFPF-ELKKQSSCSMQLTNKTDKFVAFKVKTTN--PKKYCVRPNTGIILPRTSCAVTVTMQAQ 74 (238)
Q Consensus 5 ~lL~i~P~eL~F~~-~~~~~~~~~l~L~N~s~~~vaFKVKTT~--p~~Y~VrP~~G~I~P~~s~~V~V~lq~~ 74 (238)
+.|+++|.+|.|-. ..+......++|+|.+..+..|+|+.-. ...|.|.|..|+|.||.+.++.|++.+.
T Consensus 2 P~l~v~P~~ldFG~v~~g~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l~PG~~~~~~V~~~~~ 74 (102)
T PF14874_consen 2 PTLEVSPKELDFGNVFVGQTYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFLAPGESVELEVTFSPT 74 (102)
T ss_pred CEEEEeCCEEEeeEEccCCEEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEECCCCEEEEEEEEEeC
Confidence 46899999999944 5678889999999999999999997543 4689999999999999999999999854
No 5
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=97.27 E-value=0.011 Score=45.68 Aligned_cols=109 Identities=21% Similarity=0.323 Sum_probs=72.5
Q ss_pred eEEeCCeeeecccCCCceeEEEEEEcCCCCeEEEEEeecC---C------CcEEEeCCceeeCCCCEEEEEEEecccccC
Q 026478 7 VNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTN---P------KKYCVRPNTGIILPRTSCAVTVTMQAQKEA 77 (238)
Q Consensus 7 L~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~---p------~~Y~VrP~~G~I~P~~s~~V~V~lq~~~~~ 77 (238)
|.|.|..+.|... .....++|+|.++.++.+.+.... . ..|.|.|+.-.|+||++..|.|.. .. ..
T Consensus 2 i~i~~trii~~~~---~~~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L~pg~~q~vRv~~-~~-~~ 76 (122)
T PF00345_consen 2 IQISPTRIIFNES---QRSASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRLEPGESQTVRVYR-GS-KL 76 (122)
T ss_dssp EEESSSEEEEETT---SSEEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEEETTEEEEEEEEE-CS-GS
T ss_pred EEEccEEEEEeCC---CCEEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEeCCCCcEEEEEEe-cC-CC
Confidence 6788888998753 347899999999999999997664 1 269999999999999999999944 32 23
Q ss_pred CCCCCCCCeEEEEEEeCCCCCCcccCCCCcccccCCCeeEEEEeEEEEecC
Q 026478 78 PPDFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYIPA 128 (238)
Q Consensus 78 p~~~~~kdKFlVqs~~v~~~~~~~d~~~~~f~~~~~~~i~~~kL~v~~~p~ 128 (238)
+.+....-++.|..+.... . + .+ .+..-.......++|.|.|+
T Consensus 77 ~~~~E~~yrl~~~~iP~~~--~--~--~~--~~~~v~i~~~~~i~v~~rP~ 119 (122)
T PF00345_consen 77 PIDRESLYRLSFREIPPSE--A--E--NE--SKNGVQIALRYSIPVFYRPA 119 (122)
T ss_dssp -SSS-EEEEEEEEEEESCC--T--T--SS--SSSEEEEEEEEEEEEEEEET
T ss_pred CCCceEEEEEEEEEEeccc--c--c--cc--ccceEEEEEEEEEEEEECch
Confidence 4432223344444444433 1 0 01 11111345777888888876
No 6
>PRK10884 SH3 domain-containing protein; Provisional
Probab=96.61 E-value=0.0045 Score=52.81 Aligned_cols=68 Identities=16% Similarity=0.166 Sum_probs=42.6
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CCCccHHH-HHHHHHHHHHHHHHh
Q 026478 168 VPKEKSSEAWSMISKLTEEKTSAMQQNQKLRQELEFVRKEISKSR-AGGFSTVF-VLLIGLLGILVGYLV 235 (238)
Q Consensus 168 ~~~~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~~~~~~~-~~g~~~~~-v~~v~ll~~llG~~~ 235 (238)
+++.+++++..++..|++|.+++.+|...+++|.+.++.+....+ ..-+..|+ =.+|+++|+|||.++
T Consensus 122 ~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~~~wf~~Gg~v~~~GlllGlil 191 (206)
T PRK10884 122 EMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTIIMQWFMYGGGVAGIGLLLGLLL 191 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHh
Confidence 345566666677777777777777777777777766654432211 11233333 377888888888875
No 7
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=94.47 E-value=2.1 Score=37.01 Aligned_cols=109 Identities=14% Similarity=0.085 Sum_probs=72.7
Q ss_pred ceEEeCCeeeecccCCCceeEEEEEEcCCCCeEEEEEeecCC-----CcEEEeCCceeeCCCCEEEEEEEecccccCCCC
Q 026478 6 LVNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNP-----KKYCVRPNTGIILPRTSCAVTVTMQAQKEAPPD 80 (238)
Q Consensus 6 lL~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p-----~~Y~VrP~~G~I~P~~s~~V~V~lq~~~~~p~~ 80 (238)
-|.+.|..+.|... .....++|+|.++.++......... .-|-|.|+.-.|+||+...|.|.+.. ..|.|
T Consensus 25 ~v~l~~tRvi~~~~---~~~~si~v~N~~~~p~lvQ~wv~~~~~~~~~~fivtPPl~rl~pg~~q~vRii~~~--~lp~d 99 (230)
T PRK09918 25 GMVPETSVVIVEES---DGEGSINVKNTDSNPILLYTTLVDLPEDKSKLLLVTPPVARVEPGQSQQVRFILKS--GSPLN 99 (230)
T ss_pred eEEEccEEEEEECC---CCeEEEEEEcCCCCcEEEEEEEecCCCCCCCCEEEcCCeEEECCCCceEEEEEECC--CCCCC
Confidence 36677778888753 3568999999999887777654322 25999999999999999999998874 24444
Q ss_pred CCCCCeEEEEEEeCCCCCCcccCCCCcccccCCCeeEEEEeEEEEecCCC
Q 026478 81 FQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYIPANP 130 (238)
Q Consensus 81 ~~~kdKFlVqs~~v~~~~~~~d~~~~~f~~~~~~~i~~~kL~v~~~p~~~ 130 (238)
. .--|-+....+|+... + . ..-......++++-|.|..-
T Consensus 100 r--Es~f~l~v~~IP~~~~--~--~-----~~l~ia~r~~iklfyRP~~l 138 (230)
T PRK09918 100 T--EHLLRVSFEGVPPKPG--G--K-----NKVVMPIRQDLPVLIQPAAL 138 (230)
T ss_pred e--eEEEEEEEEEcCCCCC--C--C-----CEEEEEEEeEEEEEEeCCCC
Confidence 2 2335555555664211 0 0 01123455678888888753
No 8
>PRK09926 putative chaperone protein EcpD; Provisional
Probab=94.24 E-value=1.5 Score=38.26 Aligned_cols=115 Identities=14% Similarity=0.246 Sum_probs=74.8
Q ss_pred ceEEeCCeeeecccCCCceeEEEEEEcCCCCeEEEEEeecCCC----------cEEEeCCceeeCCCCEEEEEEEecccc
Q 026478 6 LVNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPK----------KYCVRPNTGIILPRTSCAVTVTMQAQK 75 (238)
Q Consensus 6 lL~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p~----------~Y~VrP~~G~I~P~~s~~V~V~lq~~~ 75 (238)
-|.|.|..+.|+.. .-...++|.|.++.++.-.......+ -|.|.|+.-.|+||+...|.|......
T Consensus 26 ~i~l~~TRvI~~~~---~~~~sv~l~N~~~~p~LvQ~Wvd~~~~~~~p~~~~~pfivtPPl~rl~p~~~q~lRIi~~~~~ 102 (246)
T PRK09926 26 DIVISGTRIIYKSD---QKDVNVRLENKGNNPLLVQSWLDTGDDNAEPGSIKVPFTATPPVSRIDPKRGQTIKLMYTAST 102 (246)
T ss_pred eEEeCceEEEEeCC---CceEEEEEEeCCCCcEEEEEEecCCCCccCccccCCCEEEcCCeEEECCCCccEEEEEeCCCC
Confidence 47788888888753 35689999999998887776654322 399999999999999999999987531
Q ss_pred cCCCCCCCCCeEEEEEEeCCCCCCcccCCCCcccccCCCeeEEEEeEEEEecCC
Q 026478 76 EAPPDFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYIPAN 129 (238)
Q Consensus 76 ~~p~~~~~kdKFlVqs~~v~~~~~~~d~~~~~f~~~~~~~i~~~kL~v~~~p~~ 129 (238)
..|.|. .--|-+..-.+|+.....+- .. +..-......+|++-|.|..
T Consensus 103 ~lP~Dr--ESlf~lnv~eIP~~~~~~~~-~~---~n~l~iair~~IKLFyRP~~ 150 (246)
T PRK09926 103 ALPKDR--ESVFWFNVLEVPPKPDAEKV-AN---QSLLQLAFRTRIKLFYRPDG 150 (246)
T ss_pred CCCCCc--eEEEEEEeeecCCCCccccc-cc---cceEEEeeeeeEEEEEcCcc
Confidence 245542 23355555555542110000 00 00012346678888888775
No 9
>PRK15249 fimbrial chaperone protein StbB; Provisional
Probab=94.22 E-value=1.5 Score=38.53 Aligned_cols=114 Identities=20% Similarity=0.262 Sum_probs=72.0
Q ss_pred ceEEeCCeeeecccCCCceeEEEEEEcCCCCeEEEEEeecC------C-----CcEEEeCCceeeCCCCEEEEEEEeccc
Q 026478 6 LVNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTN------P-----KKYCVRPNTGIILPRTSCAVTVTMQAQ 74 (238)
Q Consensus 6 lL~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~------p-----~~Y~VrP~~G~I~P~~s~~V~V~lq~~ 74 (238)
-|.|.|..+.|+.. .-...|+|.|.++.++.-...+.. | .-|-|.|+.-.|+||+...|.|.....
T Consensus 29 ~l~l~~TRviy~~~---~~~~sl~l~N~~~~p~LvQsWv~~~~~~~~p~~~~~~pFivtPPlfrl~p~~~q~lRI~~~~~ 105 (253)
T PRK15249 29 SVTILGSRIIYPST---ASSVDVQLKNNDAIPYIVQTWFDDGDMNTSPENSSAMPFIATPPVFRIQPKAGQVVRVIYNNT 105 (253)
T ss_pred EEEeCceEEEEeCC---CcceeEEEEcCCCCcEEEEEEEeCCCCCCCccccccCcEEEcCCeEEecCCCceEEEEEEcCC
Confidence 47788888998743 346799999999888766664322 1 139999999999999999999998742
Q ss_pred ccCCCCCCCCCeEEEEEEeCCCCCCcccCCCCcccccCCCeeEEEEeEEEEecCC
Q 026478 75 KEAPPDFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYIPAN 129 (238)
Q Consensus 75 ~~~p~~~~~kdKFlVqs~~v~~~~~~~d~~~~~f~~~~~~~i~~~kL~v~~~p~~ 129 (238)
...|.|.. --|-+....+|+... +- .+ ++..-......+|++-|.|..
T Consensus 106 ~~lP~DRE--Slf~lnv~eIP~~~~--~~-~~--~~n~l~ialr~~IKLFyRP~~ 153 (253)
T PRK15249 106 KKLPQDRE--SVFWFNVLQVPPTNI--GS-DS--GQNKMLVMLRSRIKLFYRPDG 153 (253)
T ss_pred CCCCCCce--EEEEEEeeecCCCCc--cc-cc--ccceEEEEeeeEEEEEEcccc
Confidence 23455422 234444444554211 10 00 000112346677888888775
No 10
>PRK11385 putativi pili assembly chaperone; Provisional
Probab=93.67 E-value=3 Score=36.30 Aligned_cols=110 Identities=20% Similarity=0.264 Sum_probs=72.5
Q ss_pred ceEEeCCeeeecccCCCceeEEEEEEcCCCCeEEEEEeec------------CCCcEEEeCCceeeCCCCEEEEEEEecc
Q 026478 6 LVNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTT------------NPKKYCVRPNTGIILPRTSCAVTVTMQA 73 (238)
Q Consensus 6 lL~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT------------~p~~Y~VrP~~G~I~P~~s~~V~V~lq~ 73 (238)
-|.+++..+.|+.. .-..+++|.|.++.+..=..... ...-|.|.|+.=.|+||+...+.|....
T Consensus 27 ~v~l~~TRvIy~~~---~~~~sv~l~N~~~~p~LvQswv~~~~~~~~~~~~~~~~pFivtPPlfrl~p~~~q~lRIi~~~ 103 (236)
T PRK11385 27 GVVVGGTRFIFPAD---RESISILLTNTSQESWLINSKINRPTRWAGGEASTVPAPLLAAPPLILLKPGTTGTLRLLRTE 103 (236)
T ss_pred eEEeCceEEEEcCC---CceEEEEEEeCCCCcEEEEEEcccCccccCcccccccCCEEEcCCeEEECCCCceEEEEEECC
Confidence 35677778888753 35689999999998754444211 1124999999999999999999999875
Q ss_pred cccCCCCCCCCCeEEEEEEeCCCCCCcccCCCCcccccCCCeeEEEEeEEEEecCC
Q 026478 74 QKEAPPDFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYIPAN 129 (238)
Q Consensus 74 ~~~~p~~~~~kdKFlVqs~~v~~~~~~~d~~~~~f~~~~~~~i~~~kL~v~~~p~~ 129 (238)
....|.| -..-|-+....+|+... + .. .-......+|++-|.|..
T Consensus 104 ~~~LP~D--RESlf~lnv~~IPp~~~--~--~n-----~L~iair~riKLFyRP~~ 148 (236)
T PRK11385 104 SDILPVD--RETLFELSIASVPSGKV--E--NQ-----SVKVAMRSVFKLFWRPEG 148 (236)
T ss_pred CCCCCCC--ceEEEEEEEEecCCCcC--C--Cc-----eEEEEEEeeEEEEEcccc
Confidence 3235655 23455666666665211 1 00 112456778888888875
No 11
>PRK10132 hypothetical protein; Provisional
Probab=93.44 E-value=0.34 Score=37.16 Aligned_cols=24 Identities=21% Similarity=0.177 Sum_probs=19.7
Q ss_pred CccHHHHHHHHHHHHHHHHHhcCC
Q 026478 215 GFSTVFVLLIGLLGILVGYLVKTT 238 (238)
Q Consensus 215 g~~~~~v~~v~ll~~llG~~~~~~ 238 (238)
.-|+.-+.+.+.+|||||+++++.
T Consensus 84 ~~Pw~svgiaagvG~llG~Ll~RR 107 (108)
T PRK10132 84 ERPWCSVGTAAAVGIFIGALLSLR 107 (108)
T ss_pred hCcHHHHHHHHHHHHHHHHHHhcc
Confidence 356777888889999999999763
No 12
>PRK15211 fimbrial chaperone protein PefD; Provisional
Probab=93.12 E-value=4.7 Score=34.91 Aligned_cols=110 Identities=15% Similarity=0.186 Sum_probs=71.6
Q ss_pred eEEeCCeeeecccCCCceeEEEEEEcCCCCeEEEEEeecC------CCcEEEeCCceeeCCCCEEEEEEEecccccCCCC
Q 026478 7 VNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTN------PKKYCVRPNTGIILPRTSCAVTVTMQAQKEAPPD 80 (238)
Q Consensus 7 L~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~------p~~Y~VrP~~G~I~P~~s~~V~V~lq~~~~~p~~ 80 (238)
|.+++..+.|+.. .-..+++|+|.++.++.-...... ..-|.|.|+.-.|+||+...|.|..... ..|.|
T Consensus 24 v~l~~TRvIy~~~---~~~~si~i~N~~~~p~LvQswv~~~~~~~~~~pFivtPPlfrl~p~~~q~lRI~~~~~-~LP~D 99 (229)
T PRK15211 24 FVLNGTRFIYDEG---RKNISFEVTNQADQTYGGQVWIDNTTQGSSTVYMVPAPPFFKVRPKEKQIIRIMKTDS-ALPKD 99 (229)
T ss_pred EEECceEEEEcCC---CceEEEEEEeCCCCcEEEEEEEecCCCCCccCCEEEcCCeEEECCCCceEEEEEECCC-CCCCC
Confidence 6667777888753 346899999999887554443321 1249999999999999999999998753 34555
Q ss_pred CCCCCeEEEEEEeCCCCCCcccCCCCcccccCCCeeEEEEeEEEEecCC
Q 026478 81 FQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYIPAN 129 (238)
Q Consensus 81 ~~~kdKFlVqs~~v~~~~~~~d~~~~~f~~~~~~~i~~~kL~v~~~p~~ 129 (238)
-..-|-+....+|+.....+ .. .-......+|++-|.|..
T Consensus 100 --RESlf~lnv~~IP~~~~~~~--~n-----~l~iair~~iKLfyRP~~ 139 (229)
T PRK15211 100 --RESLFWLNVQEIPPKPKASE--GN-----VLAVALNTQVKLIYRPKA 139 (229)
T ss_pred --ceEEEEEEEEEcCCCCCccc--cc-----eEEEEEEeeeeeEEcchh
Confidence 23445566666665211000 00 012346678888888774
No 13
>PF14646 MYCBPAP: MYCBP-associated protein family
Probab=93.08 E-value=0.61 Score=43.97 Aligned_cols=75 Identities=16% Similarity=0.302 Sum_probs=56.9
Q ss_pred eeeecccCCCceeEEEE-EEcCCCCeEEEEEeecC------------CCcEEEeCCceeeCCCCEEEEEEEecccccCCC
Q 026478 13 ELKFPFELKKQSSCSMQ-LTNKTDKFVAFKVKTTN------------PKKYCVRPNTGIILPRTSCAVTVTMQAQKEAPP 79 (238)
Q Consensus 13 eL~F~~~~~~~~~~~l~-L~N~s~~~vaFKVKTT~------------p~~Y~VrP~~G~I~P~~s~~V~V~lq~~~~~p~ 79 (238)
.|.|.-..+......|. |.|.+..-|-|.-+--. ...|......|+|.||++..+.|++++... .
T Consensus 238 ~l~Fe~~p~e~~~~~v~~l~N~Gt~~I~y~W~~~~~~~~~~~~~~~~~~~F~Fd~~~gvilPGe~~~~~~~F~s~~~--G 315 (426)
T PF14646_consen 238 RLTFECHPGERVSKEVVRLENNGTTAIYYSWRRVPFFKNFGSLFRAQDQRFYFDTSSGVILPGETRNFPFMFKSRKV--G 315 (426)
T ss_pred EEEEEcccCceeeEEEEEEecCCceEEEEEEEecccccccchhccccCCeEEEeCCCCEECCCceEEEEEEEeCCCc--e
Confidence 68887766666666666 99999999999865433 357899999999999999999999998641 1
Q ss_pred CCCCCCeEEEEE
Q 026478 80 DFQCKDKFLLLS 91 (238)
Q Consensus 80 ~~~~kdKFlVqs 91 (238)
..+....+.+
T Consensus 316 --if~E~W~L~t 325 (426)
T PF14646_consen 316 --IFKERWELRT 325 (426)
T ss_pred --EEEEEEEEEE
Confidence 2345555544
No 14
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=93.01 E-value=0.54 Score=30.02 Aligned_cols=43 Identities=23% Similarity=0.183 Sum_probs=35.1
Q ss_pred EEEEcCCCCeEE-EEEeecCCCcEEEeCCceeeCCCCEEEEEEEe
Q 026478 28 MQLTNKTDKFVA-FKVKTTNPKKYCVRPNTGIILPRTSCAVTVTM 71 (238)
Q Consensus 28 l~L~N~s~~~va-FKVKTT~p~~Y~VrP~~G~I~P~~s~~V~V~l 71 (238)
.+++|.++.++. .+|+| +=+...+......|.||++..|.|++
T Consensus 2 F~~~N~g~~~L~I~~v~t-sCgCt~~~~~~~~i~PGes~~i~v~y 45 (45)
T PF07610_consen 2 FEFTNTGDSPLVITDVQT-SCGCTTAEYSKKPIAPGESGKIKVTY 45 (45)
T ss_pred EEEEECCCCcEEEEEeeE-ccCCEEeeCCcceECCCCEEEEEEEC
Confidence 579999987654 56665 56888889999999999999999864
No 15
>PRK15299 fimbrial chaperone protein StiB; Provisional
Probab=92.76 E-value=3.5 Score=35.51 Aligned_cols=111 Identities=12% Similarity=0.161 Sum_probs=72.3
Q ss_pred ceEEeCCeeeecccCCCceeEEEEEEcCCCCeEEEEEeecC--------CCcEEEeCCceeeCCCCEEEEEEEecccccC
Q 026478 6 LVNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTN--------PKKYCVRPNTGIILPRTSCAVTVTMQAQKEA 77 (238)
Q Consensus 6 lL~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~--------p~~Y~VrP~~G~I~P~~s~~V~V~lq~~~~~ 77 (238)
-|.++|..+.|... .-..+|+|+|.++.++.-...+.. ..-|-|.|+.-.|+||+...|.|..... ..
T Consensus 23 ~i~l~~TRvi~~~~---~~~~sl~l~N~~~~p~lvQsWv~~~~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~~-~l 98 (227)
T PRK15299 23 GINIGTTRVIFHGD---AKDASISISNSDNVPYLIQSWAQSISETGASGDAPFMVTPPLFRLNGGQKNVLRIIRTGG-NL 98 (227)
T ss_pred eEEECceEEEEeCC---CcEEEEEEEeCCCCcEEEEEEeecCCCCCCcCCCCEEEcCCeEEECCCCccEEEEEECCC-CC
Confidence 47788888888754 346899999999887666654322 1249999999999999999999987642 24
Q ss_pred CCCCCCCCeEEEEEEeCCCCCCcccCCCCcccccCCCeeEEEEeEEEEecCC
Q 026478 78 PPDFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYIPAN 129 (238)
Q Consensus 78 p~~~~~kdKFlVqs~~v~~~~~~~d~~~~~f~~~~~~~i~~~kL~v~~~p~~ 129 (238)
|.| ...-|-+....+|+.... +- .. .-......+|++.|.|+.
T Consensus 99 P~D--rEslf~lnv~eIP~~~~~-~~-~n-----~l~iavr~riKLfyRP~~ 141 (227)
T PRK15299 99 PED--RESLYWLDIKSIPSSNPD-NK-HN-----TLMLAVKAEFKLIYRPKA 141 (227)
T ss_pred CCc--ceEEEEEEeEecCCCCcc-cc-cc-----eEEEEEeeeeeEEEcccc
Confidence 554 223455666666652110 00 00 012345667888888764
No 16
>PRK15295 fimbrial assembly chaperone SthB; Provisional
Probab=92.63 E-value=6 Score=34.13 Aligned_cols=111 Identities=13% Similarity=0.159 Sum_probs=70.8
Q ss_pred ceEEeCCeeeecccCCCceeEEEEEEcCCCCeEEEEEeecC-------CCcEEEeCCceeeCCCCEEEEEEEecccccCC
Q 026478 6 LVNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTN-------PKKYCVRPNTGIILPRTSCAVTVTMQAQKEAP 78 (238)
Q Consensus 6 lL~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~-------p~~Y~VrP~~G~I~P~~s~~V~V~lq~~~~~p 78 (238)
-|.+++..+.|+.. .-...++|.|.++.++.=...... ..-|-|.|+.=.|+||+...|.|..... ..|
T Consensus 20 ~i~l~~TRvI~~~~---~~~~si~i~N~~~~p~LvQsWv~~~~~~~~~~~pFivtPPl~rl~p~~~q~lRI~~~~~-~LP 95 (226)
T PRK15295 20 SIVVGGTRLVFDGN---NDESSINVENKDSKANLVQSWLSVVDPQVTNKQAFIITPPLFRLDAGQKNSIRVIRSGA-PLP 95 (226)
T ss_pred cEEeCceEEEEeCC---CceeEEEEEeCCCCcEEEEEEEeCCCCCCCCCCCEEEcCCeEEECCCCceEEEEEECCC-CCC
Confidence 36777778888763 346899999999886553333321 1249999999999999999999988642 245
Q ss_pred CCCCCCCeEEEEEEeCCCCCCcccCCCCcccccCCCeeEEEEeEEEEecCC
Q 026478 79 PDFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYIPAN 129 (238)
Q Consensus 79 ~~~~~kdKFlVqs~~v~~~~~~~d~~~~~f~~~~~~~i~~~kL~v~~~p~~ 129 (238)
.| ..--|-+....+|+.... +- .. .-......+|++-|.|..
T Consensus 96 ~D--rEslf~lnv~~IP~~~~~-~~-~n-----~l~iair~rIKLFyRP~~ 137 (226)
T PRK15295 96 AD--RESMYWLNIKGIPSIDDN-AS-AN-----RVEISINTQIKLIYRPPA 137 (226)
T ss_pred CC--ceEEEEEEEEEcCCCCCc-Cc-cc-----eEEEEeeeeeeEEEchhh
Confidence 44 223355555666653110 00 00 012346677888888764
No 17
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=92.59 E-value=0.52 Score=34.85 Aligned_cols=23 Identities=22% Similarity=0.241 Sum_probs=19.7
Q ss_pred ccHHHHHHHHHHHHHHHHHhcCC
Q 026478 216 FSTVFVLLIGLLGILVGYLVKTT 238 (238)
Q Consensus 216 ~~~~~v~~v~ll~~llG~~~~~~ 238 (238)
-|+.-+.+.+.+|||||+++.+.
T Consensus 72 ~P~~svgiAagvG~llG~Ll~RR 94 (94)
T PF05957_consen 72 NPWQSVGIAAGVGFLLGLLLRRR 94 (94)
T ss_pred ChHHHHHHHHHHHHHHHHHHhCC
Confidence 57778888999999999999863
No 18
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=92.31 E-value=0.61 Score=32.82 Aligned_cols=22 Identities=5% Similarity=0.036 Sum_probs=15.1
Q ss_pred CccHHHHHHHHHHHHHHHHHhc
Q 026478 215 GFSTVFVLLIGLLGILVGYLVK 236 (238)
Q Consensus 215 g~~~~~v~~v~ll~~llG~~~~ 236 (238)
.-.++=.++=+++++++|++++
T Consensus 50 ~kW~~r~iiGaiI~~i~~~i~K 71 (71)
T PF10779_consen 50 TKWIWRTIIGAIITAIIYLIIK 71 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC
Confidence 3455556677788888888764
No 19
>PRK15192 fimbrial chaperone BcfG; Provisional
Probab=91.91 E-value=7.2 Score=33.94 Aligned_cols=106 Identities=17% Similarity=0.295 Sum_probs=70.5
Q ss_pred eEEeCCeeeecccCCCceeEEEEEEcCCCCeEEEEEeec----------C----CCcEEEeCCceeeCCCCEEEEEEEec
Q 026478 7 VNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTT----------N----PKKYCVRPNTGIILPRTSCAVTVTMQ 72 (238)
Q Consensus 7 L~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT----------~----p~~Y~VrP~~G~I~P~~s~~V~V~lq 72 (238)
|.++...+.|+.. .-..+++|.|.++.+ |=|++. . ..-|.|.|+.-.|+||+...+.|...
T Consensus 24 i~l~~TRvIy~~~---~k~~sv~l~N~~~~p--~LvQswv~~~~~w~~~~~~~~~~PFivtPPlfrl~p~~~~~lRI~~~ 98 (234)
T PRK15192 24 VVIGGTRFIYHAG---APALSVPVSNHSEAS--WLIDTHILPGGRWPGTKNEGNITPFVVTPPLFMLSARQENSMRVVYT 98 (234)
T ss_pred EEeCceEEEEcCC---CceEEEEEEeCCCCc--EEEEEEeccCccccccCCccccCCEEEcCCeEEECCCCceEEEEEEC
Confidence 5666677888753 346899999999886 555541 1 11399999999999999999999987
Q ss_pred ccccCCCCCCCCCeEEEEEEeCCCCCCcccCCCCcccccCCCeeEEEEeEEEEecCC
Q 026478 73 AQKEAPPDFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYIPAN 129 (238)
Q Consensus 73 ~~~~~p~~~~~kdKFlVqs~~v~~~~~~~d~~~~~f~~~~~~~i~~~kL~v~~~p~~ 129 (238)
.. ..|.| -.--|-+....+|+... + .. .-......+|++-|.|..
T Consensus 99 ~~-~LP~D--RESlf~lnv~~IPp~~~--~--~n-----~l~iair~riKlFYRP~~ 143 (234)
T PRK15192 99 GA-PLPAD--RESLFTLSIAAIPSGKP--E--AN-----RVQMAFRSALKLLYRPEG 143 (234)
T ss_pred CC-CCCCc--ceEEEEEEEEecCCCCC--C--Cc-----EEEEEEEeeeeEEEcccc
Confidence 53 34655 23456666666665211 0 00 112346678888888875
No 20
>PRK15290 lfpB fimbrial chaperone protein; Provisional
Probab=91.34 E-value=9.4 Score=33.40 Aligned_cols=111 Identities=14% Similarity=0.185 Sum_probs=73.2
Q ss_pred eEEeCCeeeecccCCCceeEEEEEEcCCC-CeEEEEEeecCC-------CcEEEeCCceeeCCCCEEEEEEEecccccCC
Q 026478 7 VNIQPSELKFPFELKKQSSCSMQLTNKTD-KFVAFKVKTTNP-------KKYCVRPNTGIILPRTSCAVTVTMQAQKEAP 78 (238)
Q Consensus 7 L~i~P~eL~F~~~~~~~~~~~l~L~N~s~-~~vaFKVKTT~p-------~~Y~VrP~~G~I~P~~s~~V~V~lq~~~~~p 78 (238)
|.+++..+.|+.. .-..+++|+|.++ .+..-....... .-|-|.|+.-.|+||+...|.|........|
T Consensus 39 v~l~~TRvIy~~~---~~~~sl~v~N~~~~~p~LvQsWvd~~~~~~~~~~pFivtPPlfrl~p~~~q~lRIi~~~~~~LP 115 (243)
T PRK15290 39 VVIGGTRVVYLSN---NPDKSISVFSKEEKIPYLIQAWVDPFNKEDKSKAPFTVIPPVSRLEPSQEKVLRIIHTKGVSLP 115 (243)
T ss_pred EEECceEEEEeCC---CceEEEEEEeCCCCCcEEEEEEEecCCCCCcccCCEEEcCCeEEECCCCceEEEEEEcCCCCCC
Confidence 6777778888753 3467999999986 567666655411 1399999999999999999999987532356
Q ss_pred CCCCCCCeEEEEEEeCCCCCCcccCCCCcccccCCCeeEEEEeEEEEecCC
Q 026478 79 PDFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYIPAN 129 (238)
Q Consensus 79 ~~~~~kdKFlVqs~~v~~~~~~~d~~~~~f~~~~~~~i~~~kL~v~~~p~~ 129 (238)
.| -..-|-+....+|+... + .+ ++ .-......+|++-|.|..
T Consensus 116 ~D--RESlf~lnv~eIPp~~~--~--~~--~n-~L~iair~rIKlFyRP~~ 157 (243)
T PRK15290 116 DD--RESVFWLNIKNIPPSAS--N--KA--TN-SLEIAVKTRIKLFWRPAS 157 (243)
T ss_pred CC--eeEEEEEEEEEcCCCCc--c--cc--cc-eEEEEEEEeeeEEEeccc
Confidence 55 23445566666665211 1 00 00 112356678888888875
No 21
>PRK15246 fimbrial assembly chaperone StbE; Provisional
Probab=91.28 E-value=4.7 Score=35.01 Aligned_cols=114 Identities=18% Similarity=0.255 Sum_probs=73.5
Q ss_pred ceEEeCCeeeecccCCCceeEEEEEEcCCCCeEEEEEeecC------CC----cEEEeCCceeeCCCCEEEEEEEecccc
Q 026478 6 LVNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTN------PK----KYCVRPNTGIILPRTSCAVTVTMQAQK 75 (238)
Q Consensus 6 lL~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~------p~----~Y~VrP~~G~I~P~~s~~V~V~lq~~~ 75 (238)
-|.|.+..+.|+.. .-..+++|.|.++.++.=...... |. -|.|.|+.=.|+||+...|.|......
T Consensus 11 ~v~l~~TRvI~~~~---~~~~sv~l~N~~~~p~LvQsWvd~~~~~~~p~~~~~pFivtPPlfrl~~~~~~~lRI~~~~~~ 87 (233)
T PRK15246 11 AVNIDRTRIIFASD---DVAQSLTLSNDNTTPMLLQVWTDAGNIDASPDNSKTPLVALPPVFKMQPGELRTLRLLLSSRQ 87 (233)
T ss_pred EEEECceEEEEcCC---CceEEEEEEeCCCCcEEEEEEEeCCCCccCcccccCcEEECCcceEECCCCceEEEEEECCCC
Confidence 36778888898753 356899999999887555443321 11 499999999999999999999987433
Q ss_pred cCCCCCCCCCeEEEEEEeCCCCCCcccCCCCcccccCCCeeEEEEeEEEEecCC
Q 026478 76 EAPPDFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYIPAN 129 (238)
Q Consensus 76 ~~p~~~~~kdKFlVqs~~v~~~~~~~d~~~~~f~~~~~~~i~~~kL~v~~~p~~ 129 (238)
..|.| -.--|-+....+|+... +. .. .+..-......+|++-|.|..
T Consensus 88 ~LP~D--RESlf~lnv~~IP~~~~--~~-~~--~~~~l~iair~rIKlFyRP~~ 134 (233)
T PRK15246 88 QLATD--RESLFWLNIYQIPPVTQ--DI-KN--HPRKLVLPLRLRLKILIRPTG 134 (233)
T ss_pred CCCCC--ceEEEEEEEEEcCCCCc--cc-cc--ccceEEEEeeeEEEEEECCcc
Confidence 35554 22346666666665221 10 00 000012346678888888875
No 22
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=91.01 E-value=1.1 Score=34.18 Aligned_cols=51 Identities=20% Similarity=0.287 Sum_probs=35.9
Q ss_pred eeEEEEEEcCCCCeEEEEEeecCCCcEEE-eCCce-eeCCCCEEEEEEEeccc
Q 026478 24 SSCSMQLTNKTDKFVAFKVKTTNPKKYCV-RPNTG-IILPRTSCAVTVTMQAQ 74 (238)
Q Consensus 24 ~~~~l~L~N~s~~~vaFKVKTT~p~~Y~V-rP~~G-~I~P~~s~~V~V~lq~~ 74 (238)
-..+++|.|.+.++..|.|+...+..+.+ .|... -|.||++..+.|.+...
T Consensus 33 N~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v~~g~~~~~~v~v~~p 85 (118)
T PF11614_consen 33 NQYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITVPPGETREVPVFVTAP 85 (118)
T ss_dssp EEEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE-TT-EEEEEEEEEE-
T ss_pred EEEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEECCCCEEEEEEEEEEC
Confidence 34799999999999999999988888888 66555 49999999998887654
No 23
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=90.62 E-value=0.75 Score=32.69 Aligned_cols=38 Identities=26% Similarity=0.288 Sum_probs=27.7
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 168 VPKEKSSEAWSMISKLTEEKTSAMQQNQKLRQELEFVR 205 (238)
Q Consensus 168 ~~~~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~ 205 (238)
.|+.++..|...|..|+.|...+.++|..|+++...|+
T Consensus 8 ~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~ 45 (72)
T PF06005_consen 8 QLEEKIQQAVETIALLQMENEELKEKNNELKEENEELK 45 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 56778888888888888888888887666655554444
No 24
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=90.54 E-value=0.33 Score=39.77 Aligned_cols=42 Identities=24% Similarity=0.300 Sum_probs=32.1
Q ss_pred cchHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHhccCC
Q 026478 171 EKSSEAWSMISKLTEEKT------------SAMQQNQKLRQELEFVRKEISKSR 212 (238)
Q Consensus 171 ~k~~e~~~~i~~L~eE~~------------~~~~q~~~L~~e~~~l~~~~~~~~ 212 (238)
.+..++..|+.+|++|.+ .+.|+.+++.+|++.+++.....+
T Consensus 40 ~~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~~~ 93 (161)
T PF04420_consen 40 KEQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKSLSSEK 93 (161)
T ss_dssp HHHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888877 477888888899888877655443
No 25
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=89.17 E-value=0.87 Score=34.87 Aligned_cols=40 Identities=18% Similarity=0.306 Sum_probs=24.3
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 168 VPKEKSSEAWSMISKLTEEKTSAMQQNQKLRQELEFVRKE 207 (238)
Q Consensus 168 ~~~~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~~ 207 (238)
++++++..+.+++..|+.+...+.+||..|+-|...||..
T Consensus 12 ~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~ 51 (107)
T PF06156_consen 12 QLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRER 51 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666666666665555544
No 26
>COG3121 FimC P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=88.53 E-value=16 Score=31.74 Aligned_cols=111 Identities=15% Similarity=0.191 Sum_probs=77.0
Q ss_pred eEEeCCeeeecccCCCceeEEEEEEcCCCCeEEEEEeecC-------CCcEEEeCCceeeCCCCEEEEEEEecccccCCC
Q 026478 7 VNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTN-------PKKYCVRPNTGIILPRTSCAVTVTMQAQKEAPP 79 (238)
Q Consensus 7 L~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~-------p~~Y~VrP~~G~I~P~~s~~V~V~lq~~~~~p~ 79 (238)
+.|.+..+.|+... -...++|.|.++.++.-.+..-. ..-|.|-|+.=.|+||+...|.|.+.+. ..|.
T Consensus 29 v~i~~TRiI~~~~~---k~~sl~l~N~~~~p~LvQ~wvd~~~~~~~~~~pfvvtPPv~rl~p~~~q~vRi~~~~~-~lP~ 104 (235)
T COG3121 29 VVLGGTRIIYPAGD---KETSLTLRNDGNQPYLVQSWVDDGLEPEKSTVPFVVTPPVFRLEPGQEQQLRILYTGN-KLPA 104 (235)
T ss_pred EEecceEEEEeCCC---ceeEEEEEcCCCCCEEEEEEEcCCCCCccccCCEEecCCeEEECCCCccEEEEEecCC-CCCC
Confidence 56667778887653 46799999988999999866542 3469999999999999999999999886 3566
Q ss_pred CCCCCCeEEEEEEeCCCCCCcccCCCCcccccCCCeeEEEEeEEEEecCC
Q 026478 80 DFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYIPAN 129 (238)
Q Consensus 80 ~~~~kdKFlVqs~~v~~~~~~~d~~~~~f~~~~~~~i~~~kL~v~~~p~~ 129 (238)
| ...-|-+.--.+|+... +.... . .-......+|++-|.|+.
T Consensus 105 d--rEslf~lnv~eIPp~~~--~~~~~--n--~lq~a~r~riKlf~RP~~ 146 (235)
T COG3121 105 D--RESLFRLNVDEIPPKSK--DDKGP--N--VLQLALRSRIKLFYRPAG 146 (235)
T ss_pred C--ceeEEEEEeeecCCCCc--ccCCc--c--eEEEEeeeeeeEEECccc
Confidence 5 34566666666665321 11000 0 002356678888888765
No 27
>PRK15188 fimbrial chaperone protein BcfB; Provisional
Probab=88.50 E-value=16 Score=31.71 Aligned_cols=113 Identities=14% Similarity=0.253 Sum_probs=71.1
Q ss_pred ceEEeCCeeeecccCCCceeEEEEEEcCCCC-eEEEEEeecC--C---CcEEEeCCceeeCCCCEEEEEEEecccccCCC
Q 026478 6 LVNIQPSELKFPFELKKQSSCSMQLTNKTDK-FVAFKVKTTN--P---KKYCVRPNTGIILPRTSCAVTVTMQAQKEAPP 79 (238)
Q Consensus 6 lL~i~P~eL~F~~~~~~~~~~~l~L~N~s~~-~vaFKVKTT~--p---~~Y~VrP~~G~I~P~~s~~V~V~lq~~~~~p~ 79 (238)
-|.+++..+.|+.. .-...++|+|.+++ +..-...... . .-|-|.|+.-.|+||+...+.|..... ..|.
T Consensus 28 gi~l~~TRvIy~~~---~~~~sv~i~N~~~~~p~LvQsWv~~~~~~~~~pFivtPPlfrl~~~~~~~lRI~~~~~-~lP~ 103 (228)
T PRK15188 28 GIALGATRVIYPQG---SKQTSLPIINSSASNVFLIQSWVANADGSRSTDFIITPPLFVIQPKKENILRIMYVGP-SLPT 103 (228)
T ss_pred eEEECcEEEEEcCC---CceEEEEEEeCCCCccEEEEEEEecCCCCccCCEEEcCCeEEECCCCceEEEEEECCC-CCCC
Confidence 36777778888753 34689999999864 3433222211 1 249999999999999999999998753 3455
Q ss_pred CCCCCCeEEEEEEeCCCCCCcccCCCCcccccCCCeeEEEEeEEEEecCCC
Q 026478 80 DFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYIPANP 130 (238)
Q Consensus 80 ~~~~kdKFlVqs~~v~~~~~~~d~~~~~f~~~~~~~i~~~kL~v~~~p~~~ 130 (238)
| -..-|-+....+|+.... +. .+..-......+|++-|.|..-
T Consensus 104 D--RESlf~lnv~~IP~~~~~-~~-----~~n~l~ia~r~~IKLFyRP~~l 146 (228)
T PRK15188 104 D--RESVFYLNSKAIPSVDKN-KL-----TGNSLQIATQSVIKLFIRPKNL 146 (228)
T ss_pred C--ceEEEEEEEEecCCCCcc-cc-----ccceEEEEEeeeEEEEECCccC
Confidence 5 234455666666653110 10 0001123466788888888753
No 28
>PRK15208 long polar fimbrial chaperone LpfB; Provisional
Probab=87.59 E-value=18 Score=31.25 Aligned_cols=112 Identities=13% Similarity=0.219 Sum_probs=69.2
Q ss_pred ceEEeCCeeeecccCCCceeEEEEEEcCCCC-eEEEEEeecCC-----CcEEEeCCceeeCCCCEEEEEEEecccccCCC
Q 026478 6 LVNIQPSELKFPFELKKQSSCSMQLTNKTDK-FVAFKVKTTNP-----KKYCVRPNTGIILPRTSCAVTVTMQAQKEAPP 79 (238)
Q Consensus 6 lL~i~P~eL~F~~~~~~~~~~~l~L~N~s~~-~vaFKVKTT~p-----~~Y~VrP~~G~I~P~~s~~V~V~lq~~~~~p~ 79 (238)
-|.+.|..+.|... .-...++|.|.+++ ++......... .-|-|.|+.-.|+||+...|.|..... ..|.
T Consensus 22 gv~l~~TRvI~~~~---~~~~si~i~N~~~~~~~LvQsWv~~~~~~~~~pfivtPPl~rl~p~~~q~lRIi~~~~-~lP~ 97 (228)
T PRK15208 22 GVALSSTRVIYDGS---KKEASLTVNNKSKTEEFLIQSWIDDANGNKKTPFIITPPLFKLDPTKNNVLRIVNITN-TLPQ 97 (228)
T ss_pred cEEeCceEEEEeCC---CceEEEEEEeCCCCCcEEEEEEEECCCCCccCCEEECCCeEEECCCCccEEEEEECCC-CCCC
Confidence 47788888898763 34689999999863 44433322211 139999999999999999999987642 2455
Q ss_pred CCCCCCeEEEEEEeCCCCCCcccCCCCcccccCCCeeEEEEeEEEEecCC
Q 026478 80 DFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYIPAN 129 (238)
Q Consensus 80 ~~~~kdKFlVqs~~v~~~~~~~d~~~~~f~~~~~~~i~~~kL~v~~~p~~ 129 (238)
|. .--|-+..-.+|+... +. . .+..-......+|++-|.|..
T Consensus 98 Dr--ESlf~lnv~eIP~~~~--~~-~---~~n~l~ia~r~~IKlFyRP~~ 139 (228)
T PRK15208 98 DR--ESVYWINVKAIPAKSE--DA-E---NKNVLQIAVRTRLKLFYRPAG 139 (228)
T ss_pred Ce--eEEEEEEEEEcCCCCC--Cc-c---ccceEEEEeeeeeeEEEchhh
Confidence 42 2335555555554211 00 0 000012346677888787764
No 29
>PRK15195 fimbrial chaperone protein FimC; Provisional
Probab=87.45 E-value=18 Score=31.25 Aligned_cols=113 Identities=12% Similarity=0.181 Sum_probs=68.0
Q ss_pred ceEEeCCeeeecccCCCceeEEEEEEcCCCC-eEEEEEeecC-----CCcEEEeCCceeeCCCCEEEEEEEecccccCCC
Q 026478 6 LVNIQPSELKFPFELKKQSSCSMQLTNKTDK-FVAFKVKTTN-----PKKYCVRPNTGIILPRTSCAVTVTMQAQKEAPP 79 (238)
Q Consensus 6 lL~i~P~eL~F~~~~~~~~~~~l~L~N~s~~-~vaFKVKTT~-----p~~Y~VrP~~G~I~P~~s~~V~V~lq~~~~~p~ 79 (238)
-|.+++..+.|+... -.+.++|.|.++. +..=...+.. ..-|-|.|+.=.|+||+...|.|..... ..|.
T Consensus 26 gi~i~~TRvIy~~~~---~~~si~l~N~~~~~~~LvQsWv~~~~~~~~~pfivtPPlfrl~p~~~q~lRIi~~~~-~LP~ 101 (229)
T PRK15195 26 GIALGATRVIYPADA---KQTSLAIRNSHTNERYLVNSWIENSSGVKEKSFIVTPPLFVSEPKSENTLRIIYAGP-PLAA 101 (229)
T ss_pred eEEECCeEEEEeCCC---ceEEEEEEeCCCCccEEEEEEecCCCCCccCCEEEcCCeEEECCCCceEEEEEECCC-CCCC
Confidence 367778888887542 3589999999864 3332211111 1259999999999999999999998643 2454
Q ss_pred CCCCCCeEEEEEEeCCCCCCcccCCCCcccccCCCeeEEEEeEEEEecCC
Q 026478 80 DFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYIPAN 129 (238)
Q Consensus 80 ~~~~kdKFlVqs~~v~~~~~~~d~~~~~f~~~~~~~i~~~kL~v~~~p~~ 129 (238)
|. ..-|-+....+|+.... +. .. +..-......+|++-|.|..
T Consensus 102 Dr--ESlf~Lnv~eIP~~~~~-~~-~~---~n~l~iair~~iKlFyRP~~ 144 (229)
T PRK15195 102 DR--ESLFWMNVKAIPSVDKN-AL-EG---RNVLQLAILSRIKLFVRPIN 144 (229)
T ss_pred Ce--eEEEEEEeeecCCCCcc-cc-cc---cceEEEEEEeEEEEEEcccc
Confidence 42 23355555555542110 10 00 00112456778888888775
No 30
>PRK15254 fimbrial chaperone protein StdC; Provisional
Probab=87.35 E-value=19 Score=31.39 Aligned_cols=110 Identities=16% Similarity=0.190 Sum_probs=69.9
Q ss_pred ceEEeCCeeeecccCCCceeEEEEEEcCCC-CeEEEEEeecCC-----CcEEEeCCceeeCCCCEEEEEEEecc--cccC
Q 026478 6 LVNIQPSELKFPFELKKQSSCSMQLTNKTD-KFVAFKVKTTNP-----KKYCVRPNTGIILPRTSCAVTVTMQA--QKEA 77 (238)
Q Consensus 6 lL~i~P~eL~F~~~~~~~~~~~l~L~N~s~-~~vaFKVKTT~p-----~~Y~VrP~~G~I~P~~s~~V~V~lq~--~~~~ 77 (238)
-|.+++..+.|+.. .-...++|.|.++ .++.=....... .-|.|.|+.-.|+||+...|.|.... ....
T Consensus 17 ~v~l~~TRvIy~~~---~~~~sv~v~N~~~~~p~LvQsWv~d~~~~~~~pFivtPPlfrl~p~~~~~lRI~~~~~~~~~l 93 (239)
T PRK15254 17 AVNVDRTRIIMDAP---QKTVAITLNNDDKTTPFLAQSWVTDADGVRTDALMALPPLQRIDAGQKSQVRITQVRGLTDKL 93 (239)
T ss_pred eEEECceEEEEeCC---CceEEEEEEeCCCCCcEEEEEEEecCCCCCcCCEEEcCCeEEECCCCceEEEEEEcccCCCCC
Confidence 36677778888753 3568999999986 465544433111 24999999999999999999998763 2234
Q ss_pred CCCCCCCCeEEEEEEeCCCCCCcccCCCCcccccCCCeeEEEEeEEEEecCC
Q 026478 78 PPDFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYIPAN 129 (238)
Q Consensus 78 p~~~~~kdKFlVqs~~v~~~~~~~d~~~~~f~~~~~~~i~~~kL~v~~~p~~ 129 (238)
|.| -..-|-+....+|+... + .. .-......+|++-|.|..
T Consensus 94 P~D--RESlf~lnv~~IP~~~~--~--~n-----~L~iair~~iKLFyRP~~ 134 (239)
T PRK15254 94 PQD--RETLFWFNVRGVPPKPE--D--DN-----VLQLAMQSQLKLFYRPKA 134 (239)
T ss_pred CCC--ceEEEEEEEEEcCCCCC--C--Cc-----eEEEEEEeEEeEEEcccc
Confidence 555 23445566666665211 0 00 012346677888887764
No 31
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.31 E-value=1.3 Score=31.22 Aligned_cols=34 Identities=26% Similarity=0.289 Sum_probs=20.4
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 169 PKEKSSEAWSMISKLTEEKTSAMQQNQKLRQELE 202 (238)
Q Consensus 169 ~~~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~ 202 (238)
|++|...|.+.|.-|+=|...+.+.|+.|.+|..
T Consensus 9 LE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q 42 (79)
T COG3074 9 LEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQ 42 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHH
Confidence 4556666666666666666666666666655544
No 32
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=86.03 E-value=3.4 Score=26.56 Aligned_cols=37 Identities=22% Similarity=0.273 Sum_probs=26.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 171 EKSSEAWSMISKLTEEKTSAMQQNQKLRQELEFVRKE 207 (238)
Q Consensus 171 ~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~~ 207 (238)
-.+.-+.+....|..+..++.+||+.|+.|+..|+..
T Consensus 5 ~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~k 41 (45)
T PF02183_consen 5 RDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEK 41 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666667777777777788888888888777544
No 33
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=85.95 E-value=1.8 Score=33.25 Aligned_cols=33 Identities=30% Similarity=0.352 Sum_probs=16.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 172 KSSEAWSMISKLTEEKTSAMQQNQKLRQELEFV 204 (238)
Q Consensus 172 k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l 204 (238)
++.++.+.+..|-||...|+-||.+|++.+..+
T Consensus 23 el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 23 ELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444455555555555555544443
No 34
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=85.67 E-value=1.6 Score=31.51 Aligned_cols=36 Identities=25% Similarity=0.229 Sum_probs=23.9
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 168 VPKEKSSEAWSMISKLTEEKTSAMQQNQKLRQELEF 203 (238)
Q Consensus 168 ~~~~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~ 203 (238)
.|++|...|.++|.-|+=|...+.++|..|.+|...
T Consensus 8 qLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~ 43 (79)
T PRK15422 8 KLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQN 43 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777777766666665443
No 35
>PRK15218 fimbrial chaperone protein PegB; Provisional
Probab=85.65 E-value=23 Score=30.63 Aligned_cols=111 Identities=15% Similarity=0.246 Sum_probs=69.5
Q ss_pred eEEeCCeeeecccCCCceeEEEEEEcCCCCeEEEEEeecCC----------CcEEEeCCceeeCCCCEEEEEEEeccccc
Q 026478 7 VNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNP----------KKYCVRPNTGIILPRTSCAVTVTMQAQKE 76 (238)
Q Consensus 7 L~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p----------~~Y~VrP~~G~I~P~~s~~V~V~lq~~~~ 76 (238)
|.++-..+.|+. ..-..+++|.|.++.+..=....... .-|-|.|+.=.|+||+...+.|..... .
T Consensus 20 i~l~~TRvIy~~---~~~~~si~i~N~~~~pyLvQsWvd~~~~~~~~~~~~~pFivtPPlfRl~p~~~~~lRI~~~~~-~ 95 (226)
T PRK15218 20 IYIYGTRIIYPA---QKKDITVQLMNDGKRSSLIQAWIDNGDTSLPPEKLQVPFIMTPPVIRVAANSGQQLKIKKLAN-N 95 (226)
T ss_pred EEeCceEEEEcC---CCcEEEEEEEcCCCCcEEEEEEEeCCCCCCCcccccCCEEECCCeEEECCCCceEEEEEECCC-C
Confidence 334444577764 23467999999998874433322221 149999999999999999999998653 3
Q ss_pred CCCCCCCCCeEEEEEEeCCCCCCcccCCCCcccccCCCeeEEEEeEEEEecCC
Q 026478 77 APPDFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYIPAN 129 (238)
Q Consensus 77 ~p~~~~~kdKFlVqs~~v~~~~~~~d~~~~~f~~~~~~~i~~~kL~v~~~p~~ 129 (238)
.|.| -.--|-+....+|+..+ +- . .+..-......+|++-|.|..
T Consensus 96 LP~D--RESlfwlnv~~IPp~~~--~~-~---~~n~L~iairtrIKLfYRP~~ 140 (226)
T PRK15218 96 LPGD--RESLFYLNVLDIPPNSD--EN-K---DKNIIKFALQNRIKLIYRPPG 140 (226)
T ss_pred CCcc--eeEEEEEEEEEcCCCCC--Cc-C---cCcEEEEEeeeEEEEEEcccc
Confidence 5655 23456666666776321 00 0 000112356678888888875
No 36
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=83.78 E-value=3.5 Score=31.12 Aligned_cols=53 Identities=28% Similarity=0.354 Sum_probs=32.5
Q ss_pred CceeEEEEEEcCCCCeEEEEEeecC--------CCcEE--Ee-----------CCceeeCCCCEEEEEEEeccc
Q 026478 22 KQSSCSMQLTNKTDKFVAFKVKTTN--------PKKYC--VR-----------PNTGIILPRTSCAVTVTMQAQ 74 (238)
Q Consensus 22 ~~~~~~l~L~N~s~~~vaFKVKTT~--------p~~Y~--Vr-----------P~~G~I~P~~s~~V~V~lq~~ 74 (238)
+..+..|+|+|.+++.+-|++.-.. .+.|. +. |..=.|+||++.+|.|++.+.
T Consensus 8 ~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV~ag~s~~v~vti~~p 81 (112)
T PF06280_consen 8 NKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTVPAGQSKTVTVTITPP 81 (112)
T ss_dssp SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE-TTEEEEEEEEEE--
T ss_pred CceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEECCCCEEEEEEEEEeh
Confidence 3467899999999999999986550 11222 11 112247889999999998764
No 37
>PRK15224 pili assembly chaperone protein SafB; Provisional
Probab=83.43 E-value=22 Score=30.93 Aligned_cols=112 Identities=10% Similarity=0.139 Sum_probs=66.9
Q ss_pred EeCCeeeecccCCCceeEEEEEEcCCCCeEEEEEee----cCC---CcEEEeCCceeeCCCCEEEEEEEecccccCCCCC
Q 026478 9 IQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKT----TNP---KKYCVRPNTGIILPRTSCAVTVTMQAQKEAPPDF 81 (238)
Q Consensus 9 i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKT----T~p---~~Y~VrP~~G~I~P~~s~~V~V~lq~~~~~p~~~ 81 (238)
++-..+.|+. ..-..+++|.|.++.+ |-|++ ... .-|.|.|+.=.|+|++...+.|..... ..|.|
T Consensus 32 l~~TRvIy~~---~~k~~sl~v~N~~~~p--yLvQsWvd~~~~~~~~pFivtPPlfRlep~~~~~lRI~~~~~-~LP~D- 104 (237)
T PRK15224 32 LGATRVIYHA---GTAGATLSVSNPQNYP--ILVQSSVKAADKSSPAPFLVMPPLFRLEANQQSQLRIVRTGG-DMPTD- 104 (237)
T ss_pred eCceEEEEeC---CCcEEEEEEEcCCCCc--EEEEEEEeCCCCCccCCEEECCCeEEECCCCceEEEEEECCC-CCCCc-
Confidence 3334577764 2346799999999876 55554 111 139999999999999999999998743 35665
Q ss_pred CCCCeEEEEEEeCCCCCCcccCCCCcccccCCCeeEEEEeEEEEecCC
Q 026478 82 QCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYIPAN 129 (238)
Q Consensus 82 ~~kdKFlVqs~~v~~~~~~~d~~~~~f~~~~~~~i~~~kL~v~~~p~~ 129 (238)
-.--|-+....+|+.....+-...--. ..-......+|++-|.|..
T Consensus 105 -RESlFwlnv~~IPp~~~~~~~~~~~~~-~~LqiairtrIKLFYRP~~ 150 (237)
T PRK15224 105 -RETLQWVCIKAVPPENEPSDTQAKGAT-LDLNLSINVCDKLIFRPDA 150 (237)
T ss_pred -eeEEEEEEEEEcCCCCccccccccccc-ceEEEEeheeeeEEEchhh
Confidence 234466666666653211000000000 0012345567888888774
No 38
>PRK10404 hypothetical protein; Provisional
Probab=83.25 E-value=6.5 Score=29.71 Aligned_cols=23 Identities=13% Similarity=0.127 Sum_probs=18.9
Q ss_pred ccHHHHHHHHHHHHHHHHHhcCC
Q 026478 216 FSTVFVLLIGLLGILVGYLVKTT 238 (238)
Q Consensus 216 ~~~~~v~~v~ll~~llG~~~~~~ 238 (238)
-|+.-+-+.+.+||+||+++.+.
T Consensus 79 ~Pw~avGiaagvGlllG~Ll~RR 101 (101)
T PRK10404 79 KPWQGIGVGAAVGLVLGLLLARR 101 (101)
T ss_pred CcHHHHHHHHHHHHHHHHHHhcC
Confidence 56677778888999999998763
No 39
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=83.04 E-value=3.1 Score=31.59 Aligned_cols=31 Identities=10% Similarity=0.144 Sum_probs=14.5
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 169 PKEKSSEAWSMISKLTEEKTSAMQQNQKLRQ 199 (238)
Q Consensus 169 ~~~k~~e~~~~i~~L~eE~~~~~~q~~~L~~ 199 (238)
++.++.++.+++.+|++++..|.+|.+.|+.
T Consensus 32 l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 32 VNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3344444444444454444444444444443
No 40
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.49 E-value=3.8 Score=28.90 Aligned_cols=37 Identities=19% Similarity=0.316 Sum_probs=29.1
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 166 LEVPKEKSSEAWSMISKLTEEKTSAMQQNQKLRQELE 202 (238)
Q Consensus 166 ~~~~~~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~ 202 (238)
.++|+++-..+..+.+.++..+..+.++|++|++|-.
T Consensus 27 ieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~ 63 (79)
T COG3074 27 IEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQN 63 (79)
T ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577777777788888888888888888888887744
No 41
>PRK15274 putative periplasmic fimbrial chaperone protein SteC; Provisional
Probab=81.85 E-value=36 Score=30.03 Aligned_cols=107 Identities=15% Similarity=0.209 Sum_probs=65.4
Q ss_pred EeCCeeeecccCCCceeEEEEEEcCCCC-eEEEEEeecCC------CcEEEeCCceeeCCCCEEEEEEEecc-cccCCCC
Q 026478 9 IQPSELKFPFELKKQSSCSMQLTNKTDK-FVAFKVKTTNP------KKYCVRPNTGIILPRTSCAVTVTMQA-QKEAPPD 80 (238)
Q Consensus 9 i~P~eL~F~~~~~~~~~~~l~L~N~s~~-~vaFKVKTT~p------~~Y~VrP~~G~I~P~~s~~V~V~lq~-~~~~p~~ 80 (238)
++-..+.|+.. .-..+++|.|.++. ++.-....... .-|-|.|+.-.|+||+...|.|...+ ....|.|
T Consensus 30 l~~TRvIy~e~---~~~~sv~v~N~~~~~p~LVQsWvdd~~~~~~~~pFivtPPLfRlep~~~q~lRI~~~~~~~~LP~D 106 (257)
T PRK15274 30 PDRTRVIFNGN---ENSITVTLKNGNATLPYLAQAWLEDDKFAKDTRYFTALPPLQRIEPKSDGQVKVQPLPAAASLPQD 106 (257)
T ss_pred eCceEEEEeCC---CceEEEEEEeCCCCCcEEEEEEccCCCCCcccCCEEEcCCeEEECCCCceEEEEEECCCCCCCCCc
Confidence 33345777642 34679999999865 55444322111 14999999999999999999999875 2345655
Q ss_pred CCCCCeEEEEEEeCCCCCCcccCCCCcccccCCCeeEEEEeEEEEecCC
Q 026478 81 FQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYIPAN 129 (238)
Q Consensus 81 ~~~kdKFlVqs~~v~~~~~~~d~~~~~f~~~~~~~i~~~kL~v~~~p~~ 129 (238)
-.--|-+....+|+... . .. .-......+|++-|.|..
T Consensus 107 --RESlFwlNv~eIPp~~~--~--~n-----~L~iairtrIKLFYRP~~ 144 (257)
T PRK15274 107 --RESLFYFNVREIPPKSD--K--PN-----TLQLALQTRIKFFYRPVA 144 (257)
T ss_pred --eeEEEEEEEEEcCCCCC--c--Cc-----eEEEEeeeeeeeEEcccc
Confidence 23446666666665211 0 00 012345566777776654
No 42
>PRK10884 SH3 domain-containing protein; Provisional
Probab=81.58 E-value=3.9 Score=34.87 Aligned_cols=63 Identities=19% Similarity=0.120 Sum_probs=34.9
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--CCCCccHHHHHHHHHHHHHHHHHh
Q 026478 170 KEKSSEAWSMISKLTEEKTSAMQQNQKLRQELEFVRKEISKS--RAGGFSTVFVLLIGLLGILVGYLV 235 (238)
Q Consensus 170 ~~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~~~~~~--~~~g~~~~~v~~v~ll~~llG~~~ 235 (238)
+....++.++-.+|++|...+..+++.|+.+++.+++....+ -.+|. .+++=.|||+||-|+.
T Consensus 131 ~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~~~wf~~Gg~---v~~~GlllGlilp~l~ 195 (206)
T PRK10884 131 DSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTIIMQWFMYGGG---VAGIGLLLGLLLPHLI 195 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchH---HHHHHHHHHHHhcccc
Confidence 334445566666666666666666666666666555433221 11232 2334445888888876
No 43
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=81.16 E-value=4.7 Score=28.07 Aligned_cols=39 Identities=13% Similarity=0.140 Sum_probs=28.9
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 168 VPKEKSSEAWSMISKLTEEKTSAMQQNQKLRQELEFVRK 206 (238)
Q Consensus 168 ~~~~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~ 206 (238)
.|+.++..+...+..|++|...++++...++.|-..|..
T Consensus 4 ~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~e 42 (65)
T TIGR02449 4 ALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLE 42 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777788888888888888887777777777665544
No 44
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=81.04 E-value=4 Score=37.74 Aligned_cols=54 Identities=19% Similarity=0.233 Sum_probs=39.5
Q ss_pred CCCceeEEEEEEcCCCCeEEEEEeecCCC-------cEEEeCCcee--------------eCCCCEEEEEEEecc
Q 026478 20 LKKQSSCSMQLTNKTDKFVAFKVKTTNPK-------KYCVRPNTGI--------------ILPRTSCAVTVTMQA 73 (238)
Q Consensus 20 ~~~~~~~~l~L~N~s~~~vaFKVKTT~p~-------~Y~VrP~~G~--------------I~P~~s~~V~V~lq~ 73 (238)
.++..+-+++++|.++++|-.+==+|+.- .|...|++.- |.||++.+|.|..|.
T Consensus 280 PGR~l~~~~~VTN~g~~~vrlgEF~TA~vRFlN~~~v~~~~~~yP~~lla~GL~v~d~~pI~PGETr~v~v~aqd 354 (399)
T TIGR03079 280 PGRALRVTMEITNNGDQVISIGEFTTAGIRFMNANGVRVLDPDYPRELLAEGLEVDDQSAIAPGETVEVKMEAKD 354 (399)
T ss_pred CCcEEEEEEEEEcCCCCceEEEeEeecceEeeCcccccccCCCChHHHhhccceeCCCCCcCCCcceEEEEEEeh
Confidence 36788899999999999998874444433 3334443322 899999999998875
No 45
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=80.74 E-value=8 Score=35.85 Aligned_cols=65 Identities=20% Similarity=0.295 Sum_probs=42.2
Q ss_pred eEEeCCeeeecccCCCceeEEEEEEcCCCCeEEEEEeecCCCcE----------------------EEeCCceeeCCCCE
Q 026478 7 VNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKY----------------------CVRPNTGIILPRTS 64 (238)
Q Consensus 7 L~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y----------------------~VrP~~G~I~P~~s 64 (238)
+.++-..-.|.-| ++..+-+|+++|.++++|-..==+|+.-+| .|.|+. =|.||++
T Consensus 249 V~~~v~~A~Y~vp-gR~l~~~l~VtN~g~~pv~LgeF~tA~vrFln~~v~~~~~~~P~~l~A~~gL~vs~~~-pI~PGET 326 (381)
T PF04744_consen 249 VKVKVTDATYRVP-GRTLTMTLTVTNNGDSPVRLGEFNTANVRFLNPDVPTDDPDYPDELLAERGLSVSDNS-PIAPGET 326 (381)
T ss_dssp EEEEEEEEEEESS-SSEEEEEEEEEEESSS-BEEEEEESSS-EEE-TTT-SS-S---TTTEETT-EEES--S--B-TT-E
T ss_pred eEEEEeccEEecC-CcEEEEEEEEEcCCCCceEeeeEEeccEEEeCcccccCCCCCchhhhccCcceeCCCC-CcCCCce
Confidence 4444455666554 678999999999999999887545544443 344544 4899999
Q ss_pred EEEEEEecc
Q 026478 65 CAVTVTMQA 73 (238)
Q Consensus 65 ~~V~V~lq~ 73 (238)
.++.|..|.
T Consensus 327 rtl~V~a~d 335 (381)
T PF04744_consen 327 RTLTVEAQD 335 (381)
T ss_dssp EEEEEEEE-
T ss_pred EEEEEEeeh
Confidence 999999864
No 46
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=80.52 E-value=6.8 Score=23.21 Aligned_cols=26 Identities=31% Similarity=0.500 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 181 SKLTEEKTSAMQQNQKLRQELEFVRK 206 (238)
Q Consensus 181 ~~L~eE~~~~~~q~~~L~~e~~~l~~ 206 (238)
.+|-.|...+++.+++|+..++.||.
T Consensus 4 qkL~sekeqLrrr~eqLK~kLeqlrn 29 (32)
T PF02344_consen 4 QKLISEKEQLRRRREQLKHKLEQLRN 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46667777888889999999888863
No 47
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=80.44 E-value=4.6 Score=28.21 Aligned_cols=31 Identities=23% Similarity=0.331 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 174 SEAWSMISKLTEEKTSAMQQNQKLRQELEFV 204 (238)
Q Consensus 174 ~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l 204 (238)
.+..+++..|+.+...+..+|+.|++++..|
T Consensus 20 ~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 20 YQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555566666666666666666666666555
No 48
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=80.44 E-value=16 Score=27.79 Aligned_cols=24 Identities=21% Similarity=0.206 Sum_probs=19.6
Q ss_pred CccHHHHHHHHHHHHHHHHHhcCC
Q 026478 215 GFSTVFVLLIGLLGILVGYLVKTT 238 (238)
Q Consensus 215 g~~~~~v~~v~ll~~llG~~~~~~ 238 (238)
--|..-|-+.+-+|||||.++.++
T Consensus 81 e~PWq~VGvaAaVGlllGlLlsRR 104 (104)
T COG4575 81 ENPWQGVGVAAAVGLLLGLLLSRR 104 (104)
T ss_pred cCCchHHHHHHHHHHHHHHHHhcC
Confidence 356677888899999999999763
No 49
>PRK01844 hypothetical protein; Provisional
Probab=79.65 E-value=1.4 Score=31.28 Aligned_cols=22 Identities=9% Similarity=0.394 Sum_probs=14.8
Q ss_pred ccHHHHHHHHHHHHHHHHHhcC
Q 026478 216 FSTVFVLLIGLLGILVGYLVKT 237 (238)
Q Consensus 216 ~~~~~v~~v~ll~~llG~~~~~ 237 (238)
+.+.++++..|+|+++|||+.+
T Consensus 5 ~~I~l~I~~li~G~~~Gff~ar 26 (72)
T PRK01844 5 LGILVGVVALVAGVALGFFIAR 26 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556777788888888753
No 50
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=79.64 E-value=4.8 Score=29.03 Aligned_cols=37 Identities=16% Similarity=0.274 Sum_probs=29.0
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 166 LEVPKEKSSEAWSMISKLTEEKTSAMQQNQKLRQELE 202 (238)
Q Consensus 166 ~~~~~~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~ 202 (238)
.++||++-..+..++..+...+..+.++|.+|++|..
T Consensus 27 ieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~ 63 (79)
T PRK15422 27 IEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQN 63 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3567777777777777777778889999999988855
No 51
>PRK00523 hypothetical protein; Provisional
Probab=79.61 E-value=1.5 Score=31.13 Aligned_cols=23 Identities=22% Similarity=0.512 Sum_probs=16.5
Q ss_pred CccHHHHHHHHHHHHHHHHHhcC
Q 026478 215 GFSTVFVLLIGLLGILVGYLVKT 237 (238)
Q Consensus 215 g~~~~~v~~v~ll~~llG~~~~~ 237 (238)
|..+..+++..|+|+++|||+.+
T Consensus 5 ~l~I~l~i~~li~G~~~Gffiar 27 (72)
T PRK00523 5 GLALGLGIPLLIVGGIIGYFVSK 27 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667778888888888753
No 52
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=79.56 E-value=20 Score=25.55 Aligned_cols=17 Identities=24% Similarity=0.428 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHh
Q 026478 219 VFVLLIGLLGILVGYLV 235 (238)
Q Consensus 219 ~~v~~v~ll~~llG~~~ 235 (238)
+++++.+++|+++|..+
T Consensus 60 lil~l~~~~Gl~lgi~~ 76 (82)
T PF13807_consen 60 LILALGLFLGLILGIGL 76 (82)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45566666777777543
No 53
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=79.52 E-value=4.6 Score=30.86 Aligned_cols=39 Identities=26% Similarity=0.271 Sum_probs=34.3
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 168 VPKEKSSEAWSMISKLTEEKTSAMQQNQKLRQELEFVRK 206 (238)
Q Consensus 168 ~~~~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~ 206 (238)
.+-+++.++..++..|-||...|+-||.+|++.+..+.+
T Consensus 19 ~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 19 QLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455678899999999999999999999999999887754
No 54
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=79.09 E-value=7.3 Score=26.49 Aligned_cols=34 Identities=15% Similarity=0.269 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 173 SSEAWSMISKLTEEKTSAMQQNQKLRQELEFVRK 206 (238)
Q Consensus 173 ~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~ 206 (238)
+.++...+..|..+...|..++..|+++...|+.
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~ 61 (64)
T PF00170_consen 28 IEELEEKVEELESENEELKKELEQLKKEIQSLKS 61 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555555555555555555555555555543
No 55
>PF11120 DUF2636: Protein of unknown function (DUF2636); InterPro: IPR019995 Members of this protein family are found invariably together with genes of bacterial cellulose biosynthesis, and are presumed to be involved in the process []. Members average about 63 amino acids in length and are not uncharacterised. The gene has been designated both YhjT and BcsF (bacterial cellulose synthesis F).
Probab=78.92 E-value=1.9 Score=29.76 Aligned_cols=20 Identities=25% Similarity=0.522 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHhcC
Q 026478 218 TVFVLLIGLLGILVGYLVKT 237 (238)
Q Consensus 218 ~~~v~~v~ll~~llG~~~~~ 237 (238)
++.+++.+++.|.|||++++
T Consensus 7 iQii~l~AlI~~pLGyl~~~ 26 (62)
T PF11120_consen 7 IQIIILCALIFFPLGYLARR 26 (62)
T ss_pred HHHHHHHHHHHHhHHHHHHH
Confidence 46788999999999999864
No 56
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=78.01 E-value=5.4 Score=30.69 Aligned_cols=43 Identities=14% Similarity=0.226 Sum_probs=37.6
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026478 167 EVPKEKSSEAWSMISKLTEEKTSAMQQNQKLRQELEFVRKEIS 209 (238)
Q Consensus 167 ~~~~~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~~~~ 209 (238)
..++.++..+.+++..|+.+...+.+||..|+-|...||+...
T Consensus 11 ~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~ 53 (110)
T PRK13169 11 DDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLE 53 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788889999999999999999999999999999987753
No 57
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=78.00 E-value=4.1 Score=28.66 Aligned_cols=55 Identities=16% Similarity=0.272 Sum_probs=32.3
Q ss_pred CCceeEEEEEEcCCCCeE-EEEEeecCCCcEE--EeCCc-eeeCCCCEEEEEEEecccc
Q 026478 21 KKQSSCSMQLTNKTDKFV-AFKVKTTNPKKYC--VRPNT-GIILPRTSCAVTVTMQAQK 75 (238)
Q Consensus 21 ~~~~~~~l~L~N~s~~~v-aFKVKTT~p~~Y~--VrP~~-G~I~P~~s~~V~V~lq~~~ 75 (238)
+....-.++++|....++ ..++.-..|.-+. +.|.. +-|.||++..+.+.+.+..
T Consensus 4 G~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~ 62 (78)
T PF10633_consen 4 GETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVTVPA 62 (78)
T ss_dssp TEEEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEEE-T
T ss_pred CCEEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEECCC
Confidence 345677899999987543 3555555688777 55554 4799999999999988643
No 58
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=77.31 E-value=11 Score=25.35 Aligned_cols=31 Identities=13% Similarity=0.128 Sum_probs=15.9
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 168 VPKEKSSEAWSMISKLTEEKTSAMQQNQKLR 198 (238)
Q Consensus 168 ~~~~k~~e~~~~i~~L~eE~~~~~~q~~~L~ 198 (238)
+++.++..+...+..++.|.+.++.+.+.++
T Consensus 4 elEn~~~~~~~~i~tvk~en~~i~~~ve~i~ 34 (55)
T PF05377_consen 4 ELENELPRIESSINTVKKENEEISESVEKIE 34 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555444444444443
No 59
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=77.14 E-value=8.6 Score=27.25 Aligned_cols=32 Identities=25% Similarity=0.304 Sum_probs=15.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 171 EKSSEAWSMISKLTEEKTSAMQQNQKLRQELE 202 (238)
Q Consensus 171 ~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~ 202 (238)
-+..++...-..|.+++..+.++|.+|++|..
T Consensus 25 ~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~ 56 (72)
T PF06005_consen 25 MENEELKEKNNELKEENEELKEENEQLKQERN 56 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444555555555555555433
No 60
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=77.13 E-value=3.6 Score=26.43 Aligned_cols=37 Identities=16% Similarity=0.191 Sum_probs=25.5
Q ss_pred cccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 165 SLEVPKEKSSEAWSMISKLTEEKTSAMQQNQKLRQEL 201 (238)
Q Consensus 165 ~~~~~~~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~ 201 (238)
|++.|+..++.+.+.-.+|..|+..++.|...|+..+
T Consensus 6 Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 6 DYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4555667777777777777777777777777776543
No 61
>smart00340 HALZ homeobox associated leucin zipper.
Probab=76.95 E-value=7.9 Score=24.54 Aligned_cols=26 Identities=23% Similarity=0.281 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026478 183 LTEEKTSAMQQNQKLRQELEFVRKEI 208 (238)
Q Consensus 183 L~eE~~~~~~q~~~L~~e~~~l~~~~ 208 (238)
|+.=..++.+||++|+.|+..||...
T Consensus 10 LKrcce~LteeNrRL~ke~~eLralk 35 (44)
T smart00340 10 LKRCCESLTEENRRLQKEVQELRALK 35 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33333456666999999999998653
No 62
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=76.58 E-value=6 Score=30.24 Aligned_cols=40 Identities=23% Similarity=0.219 Sum_probs=29.7
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 168 VPKEKSSEAWSMISKLTEEKTSAMQQNQKLRQELEFVRKE 207 (238)
Q Consensus 168 ~~~~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~~ 207 (238)
+++.++-.+-+++.-|+....++.+||..|+=|.+.||+.
T Consensus 12 ~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~R 51 (114)
T COG4467 12 NLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRER 51 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHH
Confidence 4556667777777777777778888888887777777765
No 63
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=76.42 E-value=8.6 Score=28.21 Aligned_cols=25 Identities=28% Similarity=0.407 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 183 LTEEKTSAMQQNQKLRQELEFVRKE 207 (238)
Q Consensus 183 L~eE~~~~~~q~~~L~~e~~~l~~~ 207 (238)
|.+|...+..+.....+|+..||+.
T Consensus 41 lE~E~~~l~~~l~~~E~eL~~LrkE 65 (85)
T PF15188_consen 41 LEKELNELKEKLENNEKELKLLRKE 65 (85)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHh
Confidence 3345555555555556667777664
No 64
>smart00338 BRLZ basic region leucin zipper.
Probab=76.36 E-value=9.2 Score=26.04 Aligned_cols=32 Identities=25% Similarity=0.359 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 174 SEAWSMISKLTEEKTSAMQQNQKLRQELEFVR 205 (238)
Q Consensus 174 ~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~ 205 (238)
.++...+..|..+...|..++..|+.|...|+
T Consensus 29 ~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk 60 (65)
T smart00338 29 EELERKVEQLEAENERLKKEIERLRRELEKLK 60 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555444
No 65
>PRK15253 putative fimbrial assembly chaperone protein StcB; Provisional
Probab=75.91 E-value=54 Score=28.64 Aligned_cols=109 Identities=13% Similarity=0.245 Sum_probs=68.2
Q ss_pred EeCCeeeecccCCCceeEEEEEEcCCCCeEEEEEeecCC----------CcEEEeCCceeeCCCCEEEEEEEecccccCC
Q 026478 9 IQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNP----------KKYCVRPNTGIILPRTSCAVTVTMQAQKEAP 78 (238)
Q Consensus 9 i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p----------~~Y~VrP~~G~I~P~~s~~V~V~lq~~~~~p 78 (238)
++-..+.|+.. .-..+++|.|.++.+..=....... .-|-|.|+.=.|+|++...|.|..... ..|
T Consensus 37 l~~TRvIy~~~---~k~~sv~i~N~~~~pyLvQsWvd~~~~~~~~~~~~~pFivtPPlfRl~p~~~~~lRI~~~~~-~LP 112 (242)
T PRK15253 37 IYGTRVIYPAE---KKEVVVQLVNQGEQASLVQSWIDDGNTSLPPEKIQVPFMLTPPVARVAAESGQQIKIKKMPN-SLP 112 (242)
T ss_pred eCceEEEEeCC---CceEEEEEEcCCCCcEEEEEEEECCCCCCCcccccCCEEECCCeEEECCCCceEEEEEECCC-CCC
Confidence 33345777642 3467999999998865444332221 149999999999999999999987653 356
Q ss_pred CCCCCCCeEEEEEEeCCCCCCcccCCCCcccccCCCeeEEEEeEEEEecCC
Q 026478 79 PDFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYIPAN 129 (238)
Q Consensus 79 ~~~~~kdKFlVqs~~v~~~~~~~d~~~~~f~~~~~~~i~~~kL~v~~~p~~ 129 (238)
.| -.--|-+....+|+... +. . .+..-......+|++-|.|..
T Consensus 113 ~D--RESlfwlnv~~IPp~~~--~~-~---~~n~l~iairtriKLFYRP~~ 155 (242)
T PRK15253 113 DN--KESLFYLNVLDIPPNSQ--EN-A---GKNVLKFAMQNRIKLIWRPSR 155 (242)
T ss_pred cc--eeEEEEEEEEEcCCCCC--Cc-C---cCcEEEEEeeeEEEEEEcchh
Confidence 55 23456666666776321 10 0 000012346678888888875
No 66
>PRK15285 putative fimbrial chaperone protein StfD; Provisional
Probab=75.01 E-value=58 Score=28.59 Aligned_cols=107 Identities=20% Similarity=0.201 Sum_probs=65.1
Q ss_pred EeCCeeeecccCCCceeEEEEEEcCCCC-eEEEEEee--cCCC----cEEEeCCceeeCCCCEEEEEEEecc-cccCCCC
Q 026478 9 IQPSELKFPFELKKQSSCSMQLTNKTDK-FVAFKVKT--TNPK----KYCVRPNTGIILPRTSCAVTVTMQA-QKEAPPD 80 (238)
Q Consensus 9 i~P~eL~F~~~~~~~~~~~l~L~N~s~~-~vaFKVKT--T~p~----~Y~VrP~~G~I~P~~s~~V~V~lq~-~~~~p~~ 80 (238)
++-..+.|+.. .-..+++|+|.++. ++.=.... ...+ -|-|.|+.-.|+||+...+.|...+ ....|.|
T Consensus 29 l~~TRVIy~~~---~~~~sv~i~N~~~~~p~LvQsWvd~~~~~~~~~pFiVtPPlfRl~p~~~~~lRI~~~~~~~~LP~D 105 (250)
T PRK15285 29 PDRTRLVFRGE---DKSISVDLKNANSKLPYLAQSWVEDEKGVKITSPLIVVPPVQRIEPSAIGQVKIQGMPALASLPQD 105 (250)
T ss_pred eCccEEEEcCC---CceEEEEEEeCCCCCcEEEEEEeeCCCCCcccCCEEEcCCeEEECCCCceEEEEEECCCCCCCCCC
Confidence 33345777642 34679999999865 54433322 1111 3999999999999999999999775 2335655
Q ss_pred CCCCCeEEEEEEeCCCCCCcccCCCCcccccCCCeeEEEEeEEEEecCC
Q 026478 81 FQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYIPAN 129 (238)
Q Consensus 81 ~~~kdKFlVqs~~v~~~~~~~d~~~~~f~~~~~~~i~~~kL~v~~~p~~ 129 (238)
-.--|-+....+|+... + .. .-......+|++-|.|..
T Consensus 106 --RESlfwlnv~~IPp~~~--~--~n-----~L~iairtrIKLfYRP~~ 143 (250)
T PRK15285 106 --RETLFYYNVREIPPQSD--K--PN-----TLQIALQTRIKVFYRPQA 143 (250)
T ss_pred --ceEEEEEEEEEcCCCCC--C--Cc-----EEEEEeeeeeeEEECccc
Confidence 23446666666665311 0 00 012345567777777664
No 67
>smart00809 Alpha_adaptinC2 Adaptin C-terminal domain. Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. Gamma-adaptin is a subunit of the golgi adaptor. Alpha adaptin is a heterotetramer that regulates clathrin-bud formation. The carboxyl-terminal appendage of the alpha subunit regulates translocation of endocytic accessory proteins to the bud site. This Ig-fold domain is found in alpha, beta and gamma adaptins and consists of a beta-sandwich containing 7 strands in 2 beta-sheets in a greek-key topology PUBMED:10430869, PUBMED:12176391. The adaptor appendage contains an additional N-terminal strand.
Probab=74.68 E-value=18 Score=26.53 Aligned_cols=53 Identities=15% Similarity=0.293 Sum_probs=39.5
Q ss_pred CCceeEEEEEEcCCCCeEE-EEEeecCCCcEEEe--CCce-eeCCCCEEEEEEEecc
Q 026478 21 KKQSSCSMQLTNKTDKFVA-FKVKTTNPKKYCVR--PNTG-IILPRTSCAVTVTMQA 73 (238)
Q Consensus 21 ~~~~~~~l~L~N~s~~~va-FKVKTT~p~~Y~Vr--P~~G-~I~P~~s~~V~V~lq~ 73 (238)
+....-.+...|.+..++- |.+.-..|+-+.++ |..| .|.||+.+.-.+.+..
T Consensus 17 ~~~~~i~~~~~N~s~~~it~f~~~~avpk~~~l~l~~~s~~~l~p~~~i~q~~~i~~ 73 (104)
T smart00809 17 PGLIRITLTFTNKSPSPITNFSFQAAVPKSLKLQLQPPSSPTLPPGGQITQVLKVEN 73 (104)
T ss_pred CCeEEEEEEEEeCCCCeeeeEEEEEEcccceEEEEcCCCCCccCCCCCEEEEEEEEC
Confidence 3467788999999987766 88887778766665 5544 7999987776666654
No 68
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=72.75 E-value=15 Score=26.47 Aligned_cols=40 Identities=20% Similarity=0.326 Sum_probs=30.9
Q ss_pred eEEEEEEcCCCCeEEEEEee-----cCCCcEEEeCCceeeCCCCEEEEEEEe
Q 026478 25 SCSMQLTNKTDKFVAFKVKT-----TNPKKYCVRPNTGIILPRTSCAVTVTM 71 (238)
Q Consensus 25 ~~~l~L~N~s~~~vaFKVKT-----T~p~~Y~VrP~~G~I~P~~s~~V~V~l 71 (238)
.-.|+|.|.....+.|.|.. ..|..|. |.||++..+.+-+
T Consensus 21 ~l~l~l~N~g~~~~~~~v~~~~y~~~~~~~~~-------v~ag~~~~~~w~l 65 (89)
T PF05506_consen 21 NLRLTLSNPGSAAVTFTVYDNAYGGGGPWTYT-------VAAGQTVSLTWPL 65 (89)
T ss_pred EEEEEEEeCCCCcEEEEEEeCCcCCCCCEEEE-------ECCCCEEEEEEee
Confidence 56899999999999999987 3344555 5558888777766
No 69
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=72.06 E-value=13 Score=25.34 Aligned_cols=33 Identities=24% Similarity=0.352 Sum_probs=18.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 026478 171 EKSSEAWSMISKLTEEKTSAMQQNQKLRQELEFVRKEISK 210 (238)
Q Consensus 171 ~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~~~~~ 210 (238)
++..-+...|..|.+ +|.+|+.|-..||..+.+
T Consensus 14 EEVevLK~~I~eL~~-------~n~~Le~EN~~Lk~~~~p 46 (59)
T PF01166_consen 14 EEVEVLKEQIAELEE-------RNSQLEEENNLLKQNASP 46 (59)
T ss_dssp TSHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhcCCH
Confidence 344455555555554 466666666666665544
No 70
>PRK15233 putative fimbrial chaperone protein SefB; Provisional
Probab=71.71 E-value=70 Score=28.07 Aligned_cols=112 Identities=12% Similarity=0.140 Sum_probs=64.5
Q ss_pred CeeeecccCCCceeEEEEEEcCCCCeEEEEEeec--C---CCcEEEeCCceeeCCCCEEEEEEEecccccCCCCCCCCCe
Q 026478 12 SELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTT--N---PKKYCVRPNTGIILPRTSCAVTVTMQAQKEAPPDFQCKDK 86 (238)
Q Consensus 12 ~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT--~---p~~Y~VrP~~G~I~P~~s~~V~V~lq~~~~~p~~~~~kdK 86 (238)
..+.|+.. ....+++|.|.++.+..=..... . ..-|-|.|+.=.|+|++...+.|..... ..|.|- .--
T Consensus 47 TRvIy~~~---~~~~sl~i~N~~~~p~LvQsWvd~~~~~~~~pFiVtPPLfRLep~~~~~lRIi~~~~-~LP~DR--ESl 120 (246)
T PRK15233 47 TRVIYKED---APSTSFWIMNEKEYPILVQTQVYNDDKSSKAPFIVTPPILKVESNARTRLKVIPTSN-LFNKNE--ESL 120 (246)
T ss_pred eEEEEeCC---CcEEEEEEEcCCCCcEEEEEEEecCCCCccCCEEECCCeEEECCCCceEEEEEECCC-CCCcCc--eEE
Confidence 34565533 24679999998877733332211 1 1149999999999999999999998753 355552 233
Q ss_pred EEEEEEeCCCCCCcccCCCCccc-ccCCCeeEEEEeEEEEecCC
Q 026478 87 FLLLSVVAPDGATAKDIGPDMFT-KEDGKVVEEFKLRVVYIPAN 129 (238)
Q Consensus 87 FlVqs~~v~~~~~~~d~~~~~f~-~~~~~~i~~~kL~v~~~p~~ 129 (238)
|-+....+|+.....+-...--. ...-......+|++-|.|..
T Consensus 121 fwlnv~~IPp~~~~~~~~~n~~~~~~~LqiairtrIKLFYRP~~ 164 (246)
T PRK15233 121 YWLCVKGVPPLNDNESNNKNNITTNLNVNVVTNSCIKLIYRPKT 164 (246)
T ss_pred EEEEEEEcCCCCcccccccccccccceEEEEeeeeeEEEEchhh
Confidence 66666666653210000000000 00011235677888888875
No 71
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=71.46 E-value=8.4 Score=30.44 Aligned_cols=37 Identities=16% Similarity=0.222 Sum_probs=21.3
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 168 VPKEKSSEAWSMISKLTEEKTSAMQQNQKLRQELEFV 204 (238)
Q Consensus 168 ~~~~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l 204 (238)
+|+.+-.++.+++.+|.+|.+.+.+|...++...+.|
T Consensus 78 eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l 114 (135)
T KOG4196|consen 78 ELEKEKAELQQQVEKLKEENSRLRRELDAYKSKYEAL 114 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555566666666666666666665555555544
No 72
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=70.78 E-value=12 Score=25.35 Aligned_cols=23 Identities=39% Similarity=0.349 Sum_probs=18.9
Q ss_pred ccccccchHHHHHHHHHHHHHHH
Q 026478 166 LEVPKEKSSEAWSMISKLTEEKT 188 (238)
Q Consensus 166 ~~~~~~k~~e~~~~i~~L~eE~~ 188 (238)
++.|+++.+++...+..|+.|..
T Consensus 16 VevLK~~I~eL~~~n~~Le~EN~ 38 (59)
T PF01166_consen 16 VEVLKEQIAELEERNSQLEEENN 38 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688999999999999988744
No 73
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=70.37 E-value=5.4 Score=27.17 Aligned_cols=18 Identities=28% Similarity=0.178 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHhcC
Q 026478 220 FVLLIGLLGILVGYLVKT 237 (238)
Q Consensus 220 ~v~~v~ll~~llG~~~~~ 237 (238)
.++++|++|++||+|+-.
T Consensus 41 ~~~~~c~~S~~lG~~~~~ 58 (60)
T PF06072_consen 41 AVVALCVLSGGLGALVAW 58 (60)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 345889999999999753
No 74
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=70.31 E-value=11 Score=36.06 Aligned_cols=35 Identities=17% Similarity=0.228 Sum_probs=19.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 172 KSSEAWSMISKLTEEKTSAMQQNQKLRQELEFVRK 206 (238)
Q Consensus 172 k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~ 206 (238)
-++-+.+++..++.|.+.+.+||+.|++|.++||+
T Consensus 60 TlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~ 94 (472)
T TIGR03752 60 TLRTLVAEVKELRKRLAKLISENEALKAENERLQK 94 (472)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555555544
No 75
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=69.98 E-value=12 Score=25.14 Aligned_cols=36 Identities=8% Similarity=0.262 Sum_probs=30.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 172 KSSEAWSMISKLTEEKTSAMQQNQKLRQELEFVRKE 207 (238)
Q Consensus 172 k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~~ 207 (238)
++.++...+.++.-....++.||+.++++++.+.+.
T Consensus 1 Ri~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~en 36 (55)
T PF05377_consen 1 RIDELENELPRIESSINTVKKENEEISESVEKIEEN 36 (55)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357888999999999999999999999998877654
No 76
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=69.63 E-value=20 Score=26.59 Aligned_cols=56 Identities=20% Similarity=0.248 Sum_probs=39.7
Q ss_pred CCCceeEEEEEEcCCCCe--------EEEEEeecCCC--cEEEeCCceeeCCCCEEEEEEEecccc
Q 026478 20 LKKQSSCSMQLTNKTDKF--------VAFKVKTTNPK--KYCVRPNTGIILPRTSCAVTVTMQAQK 75 (238)
Q Consensus 20 ~~~~~~~~l~L~N~s~~~--------vaFKVKTT~p~--~Y~VrP~~G~I~P~~s~~V~V~lq~~~ 75 (238)
.++.....++++|+++.+ .++-|-=|.-- ....+-..+-|.||++..+.+.+.+.+
T Consensus 13 vG~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~ytG~~~~~~~~~~~~~~l~p~~~~~~~~~i~p~~ 78 (107)
T PF00927_consen 13 VGQDFTVSVSFTNPSSEPLRNVSLNLCAFTVEYTGLTRDQFKKEKFEVTLKPGETKSVEVTITPSQ 78 (107)
T ss_dssp TTSEEEEEEEEEE-SSS-EECEEEEEEEEEEECTTTEEEEEEEEEEEEEE-TTEEEEEEEEE-HHS
T ss_pred CCCCEEEEEEEEeCCcCccccceeEEEEEEEEECCcccccEeEEEcceeeCCCCEEEEEEEEEcee
Confidence 567889999999999877 55555544332 256778889999999999999987753
No 77
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=69.50 E-value=8.3 Score=29.28 Aligned_cols=35 Identities=9% Similarity=0.102 Sum_probs=31.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 172 KSSEAWSMISKLTEEKTSAMQQNQKLRQELEFVRK 206 (238)
Q Consensus 172 k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~ 206 (238)
.+.+..+++..+++|...+.++|+.|+.|...|+.
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 46788999999999999999999999999998864
No 78
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=69.25 E-value=17 Score=35.28 Aligned_cols=26 Identities=19% Similarity=0.349 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 179 MISKLTEEKTSAMQQNQKLRQELEFV 204 (238)
Q Consensus 179 ~i~~L~eE~~~~~~q~~~L~~e~~~l 204 (238)
-+++|-.|..+|+.||..|++.++.|
T Consensus 310 rLq~ll~Ene~Lk~ENatLk~qL~~l 335 (655)
T KOG4343|consen 310 RLQALLSENEQLKKENATLKRQLDEL 335 (655)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 34444444444444454454444433
No 79
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.86 E-value=6 Score=27.89 Aligned_cols=19 Identities=21% Similarity=0.614 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 026478 218 TVFVLLIGLLGILVGYLVK 236 (238)
Q Consensus 218 ~~~v~~v~ll~~llG~~~~ 236 (238)
++.+.+..|+|+++|||+.
T Consensus 7 il~ivl~ll~G~~~G~fia 25 (71)
T COG3763 7 ILLIVLALLAGLIGGFFIA 25 (71)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444556677888888874
No 80
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=68.16 E-value=15 Score=26.16 Aligned_cols=31 Identities=16% Similarity=0.119 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 173 SSEAWSMISKLTEEKTSAMQQNQKLRQELEF 203 (238)
Q Consensus 173 ~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~ 203 (238)
......++.+++.+...+..+|..|+.|...
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~ 56 (85)
T TIGR02209 26 TRQLNNELQKLQLEIDKLQKEWRDLQLEVAE 56 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666666666666553
No 81
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=68.02 E-value=8.1 Score=26.91 Aligned_cols=38 Identities=13% Similarity=0.297 Sum_probs=29.5
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 168 VPKEKSSEAWSMISKLTEEKTSAMQQNQKLRQELEFVR 205 (238)
Q Consensus 168 ~~~~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~ 205 (238)
.++.++.++..++.++++|...+.++.+.|+...+.+.
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie 58 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIE 58 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 45677888999999999999999999999944444333
No 82
>COG5547 Small integral membrane protein [Function unknown]
Probab=67.89 E-value=5.8 Score=26.91 Aligned_cols=21 Identities=38% Similarity=0.732 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCC
Q 026478 218 TVFVLLIGLLGILVGYLVKTT 238 (238)
Q Consensus 218 ~~~v~~v~ll~~llG~~~~~~ 238 (238)
..+|+++|++|+-+|++..+|
T Consensus 32 tilviil~~lGv~iGl~~~r~ 52 (62)
T COG5547 32 TILVIILILLGVYIGLYKKRT 52 (62)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 456889999999999998775
No 83
>PRK14127 cell division protein GpsB; Provisional
Probab=67.60 E-value=22 Score=27.26 Aligned_cols=42 Identities=14% Similarity=0.194 Sum_probs=29.6
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026478 168 VPKEKSSEAWSMISKLTEEKTSAMQQNQKLRQELEFVRKEIS 209 (238)
Q Consensus 168 ~~~~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~~~~ 209 (238)
+..+=|++.......|.+|+..|.+++..|++++..++.+..
T Consensus 27 EVD~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 27 EVDKFLDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334455666666777777888888888888888887766543
No 84
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=67.10 E-value=13 Score=30.37 Aligned_cols=16 Identities=25% Similarity=0.244 Sum_probs=6.2
Q ss_pred cchHHHHHHHHHHHHH
Q 026478 171 EKSSEAWSMISKLTEE 186 (238)
Q Consensus 171 ~k~~e~~~~i~~L~eE 186 (238)
+++.++..++..|+.|
T Consensus 86 ~el~~l~~~~k~l~~e 101 (169)
T PF07106_consen 86 EELAELKKEVKSLEAE 101 (169)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 85
>PF11611 DUF4352: Domain of unknown function (DUF4352); InterPro: IPR021652 This entry is represented by Bacteriophage A118, Gp32. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a group of putative lipoproteins of unknown function.; PDB: 3CFU_A.
Probab=64.23 E-value=32 Score=25.70 Aligned_cols=53 Identities=19% Similarity=0.224 Sum_probs=34.3
Q ss_pred CCceeEEEEEEcCCCCeEE-----EEEeecCCCcEEEeC---------CceeeCCCCEEEEEEEecc
Q 026478 21 KKQSSCSMQLTNKTDKFVA-----FKVKTTNPKKYCVRP---------NTGIILPRTSCAVTVTMQA 73 (238)
Q Consensus 21 ~~~~~~~l~L~N~s~~~va-----FKVKTT~p~~Y~VrP---------~~G~I~P~~s~~V~V~lq~ 73 (238)
.+-+.-.++++|.+++++. |++.+..-+.|.... ..+-|.||+++.-.|.+..
T Consensus 35 ~~fv~v~v~v~N~~~~~~~~~~~~f~l~d~~g~~~~~~~~~~~~~~~~~~~~i~pG~~~~g~l~F~v 101 (123)
T PF11611_consen 35 NKFVVVDVTVKNNGDEPLDFSPSDFKLYDSDGNKYDPDFSASSNDNDLFSETIKPGESVTGKLVFEV 101 (123)
T ss_dssp SEEEEEEEEEEE-SSS-EEEEGGGEEEE-TT--B--EEE-CCCTTTB--EEEE-TT-EEEEEEEEEE
T ss_pred CEEEEEEEEEEECCCCcEEecccceEEEeCCCCEEcccccchhccccccccEECCCCEEEEEEEEEE
Confidence 4557789999999998876 788877767777554 3579999999999998864
No 86
>smart00338 BRLZ basic region leucin zipper.
Probab=63.94 E-value=13 Score=25.22 Aligned_cols=32 Identities=25% Similarity=0.405 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 176 AWSMISKLTEEKTSAMQQNQKLRQELEFVRKE 207 (238)
Q Consensus 176 ~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~~ 207 (238)
-.+.+..|+.+...+..+|..|+.++..|+..
T Consensus 24 Kk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e 55 (65)
T smart00338 24 KKAEIEELERKVEQLEAENERLKKEIERLRRE 55 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777778888888888777777654
No 87
>PRK04406 hypothetical protein; Provisional
Probab=63.90 E-value=23 Score=25.24 Aligned_cols=43 Identities=9% Similarity=0.135 Sum_probs=31.4
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026478 166 LEVPKEKSSEAWSMISKLTEEKTSAMQQNQKLRQELEFVRKEI 208 (238)
Q Consensus 166 ~~~~~~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~~~ 208 (238)
..+|+.+++=....|..|++......++...|+.++..|+.+.
T Consensus 13 i~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl 55 (75)
T PRK04406 13 INDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKV 55 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467777777777888888877777777788887777775543
No 88
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=63.74 E-value=17 Score=23.79 Aligned_cols=30 Identities=23% Similarity=0.321 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 177 WSMISKLTEEKTSAMQQNQKLRQELEFVRK 206 (238)
Q Consensus 177 ~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~ 206 (238)
...+..|..+...|..+|..|++++..|++
T Consensus 24 k~~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 24 KQREEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344555666666677777777777766653
No 89
>PRK00736 hypothetical protein; Provisional
Probab=63.54 E-value=23 Score=24.69 Aligned_cols=42 Identities=14% Similarity=0.261 Sum_probs=30.4
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 166 LEVPKEKSSEAWSMISKLTEEKTSAMQQNQKLRQELEFVRKE 207 (238)
Q Consensus 166 ~~~~~~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~~ 207 (238)
..+|+.+++-....|..|++....-.++...|+.++..|..+
T Consensus 7 i~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~r 48 (68)
T PRK00736 7 LTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTER 48 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777887777888888887777777777777777766544
No 90
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=63.46 E-value=33 Score=22.41 Aligned_cols=29 Identities=24% Similarity=0.294 Sum_probs=21.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 172 KSSEAWSMISKLTEEKTSAMQQNQKLRQE 200 (238)
Q Consensus 172 k~~e~~~~i~~L~eE~~~~~~q~~~L~~e 200 (238)
...++...+..|..+...|.+++..|+.|
T Consensus 26 ~~~~le~~~~~L~~en~~L~~~i~~L~~E 54 (54)
T PF07716_consen 26 REEELEQEVQELEEENEQLRQEIAQLERE 54 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34566777777888888888888877765
No 91
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=62.39 E-value=22 Score=24.73 Aligned_cols=43 Identities=21% Similarity=0.257 Sum_probs=30.6
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026478 167 EVPKEKSSEAWSMISKLTEEKTSAMQQNQKLRQELEFVRKEIS 209 (238)
Q Consensus 167 ~~~~~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~~~~ 209 (238)
.+|+.+++=....|..|++......++...|+.++..|+.+..
T Consensus 7 ~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~ 49 (69)
T PF04102_consen 7 EELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLR 49 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777778888888777777777777777777766543
No 92
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=61.97 E-value=22 Score=27.73 Aligned_cols=37 Identities=16% Similarity=0.160 Sum_probs=24.5
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 168 VPKEKSSEAWSMISKLTEEKTSAMQQNQKLRQELEFV 204 (238)
Q Consensus 168 ~~~~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l 204 (238)
.+.+.++....++..|++|...+..+++.+.+|+..|
T Consensus 20 ~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l 56 (120)
T PF12325_consen 20 RLQSQLRRLEGELASLQEELARLEAERDELREEIVKL 56 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666667777777777777777777776665544
No 93
>TIGR03493 cellullose_BcsF celllulose biosynthesis operon protein BcsF/YhjT. Members of this protein family are found invariably together with genes of bacterial cellulose biosynthesis, and are presumed to be involved in the process. Members average about 63 amino acids in length and are not uncharacterized. The gene has been designated both YhjT and BcsF (bacterial cellulose synthesis F).
Probab=61.95 E-value=9.1 Score=26.26 Aligned_cols=20 Identities=35% Similarity=0.552 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHhcC
Q 026478 218 TVFVLLIGLLGILVGYLVKT 237 (238)
Q Consensus 218 ~~~v~~v~ll~~llG~~~~~ 237 (238)
++.|++-||+.|-+||++.+
T Consensus 7 lQli~lcALIf~pLgyl~~r 26 (62)
T TIGR03493 7 LQLVLLCALIFFPLGYLARR 26 (62)
T ss_pred HHHHHHHHHHHHhHHHHHHh
Confidence 46778889999999999764
No 94
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=61.65 E-value=4.6 Score=33.32 Aligned_cols=15 Identities=27% Similarity=0.350 Sum_probs=2.7
Q ss_pred HHHHHHHHHHHHHHH
Q 026478 189 SAMQQNQKLRQELEF 203 (238)
Q Consensus 189 ~~~~q~~~L~~e~~~ 203 (238)
.|+.++++|++|+..
T Consensus 28 ~L~~~~QRLkDE~RD 42 (166)
T PF04880_consen 28 NLREEVQRLKDELRD 42 (166)
T ss_dssp HHHHCH---------
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444433
No 95
>PRK00523 hypothetical protein; Provisional
Probab=61.00 E-value=10 Score=26.96 Aligned_cols=21 Identities=19% Similarity=0.363 Sum_probs=17.3
Q ss_pred ccHHHHHHHHHHHHHHHHHhc
Q 026478 216 FSTVFVLLIGLLGILVGYLVK 236 (238)
Q Consensus 216 ~~~~~v~~v~ll~~llG~~~~ 236 (238)
-.++++++++++++++|.+.|
T Consensus 2 ~~~~l~I~l~i~~li~G~~~G 22 (72)
T PRK00523 2 LAIGLALGLGIPLLIVGGIIG 22 (72)
T ss_pred chHHHHHHHHHHHHHHHHHHH
Confidence 346778899999999998876
No 96
>PRK00295 hypothetical protein; Provisional
Probab=60.95 E-value=26 Score=24.42 Aligned_cols=42 Identities=10% Similarity=0.083 Sum_probs=28.6
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 166 LEVPKEKSSEAWSMISKLTEEKTSAMQQNQKLRQELEFVRKE 207 (238)
Q Consensus 166 ~~~~~~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~~ 207 (238)
..+|+.+++=....|..|++......++...|+.++..|+.+
T Consensus 7 i~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~r 48 (68)
T PRK00295 7 VTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKR 48 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777777777777666666667777776666543
No 97
>PRK02793 phi X174 lysis protein; Provisional
Probab=59.69 E-value=30 Score=24.38 Aligned_cols=43 Identities=19% Similarity=0.187 Sum_probs=30.1
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026478 166 LEVPKEKSSEAWSMISKLTEEKTSAMQQNQKLRQELEFVRKEI 208 (238)
Q Consensus 166 ~~~~~~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~~~ 208 (238)
..+|+.+++=....|..|++......++...|+.++..|..+.
T Consensus 10 i~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl 52 (72)
T PRK02793 10 LAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKL 52 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467777777777788887777777777777777777665543
No 98
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=59.49 E-value=19 Score=24.37 Aligned_cols=33 Identities=30% Similarity=0.431 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 175 EAWSMISKLTEEKTSAMQQNQKLRQELEFVRKE 207 (238)
Q Consensus 175 e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~~ 207 (238)
.-.+++..|+++...+..+|..|+.++..|+..
T Consensus 23 RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~ 55 (64)
T PF00170_consen 23 RKKQYIEELEEKVEELESENEELKKELEQLKKE 55 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335567777777777777777777777766554
No 99
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=59.45 E-value=66 Score=23.40 Aligned_cols=16 Identities=13% Similarity=0.196 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHhcC
Q 026478 222 LLIGLLGILVGYLVKT 237 (238)
Q Consensus 222 ~~v~ll~~llG~~~~~ 237 (238)
+.++++...++|++.|
T Consensus 75 ~~~~~f~~~v~yI~~r 90 (92)
T PF03908_consen 75 FAFLFFLLVVLYILWR 90 (92)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 4444555556677665
No 100
>PHA02414 hypothetical protein
Probab=59.27 E-value=59 Score=24.48 Aligned_cols=69 Identities=19% Similarity=0.237 Sum_probs=35.0
Q ss_pred ccccchHHHHHHHHHHHH------HHH-HHHHHHHHHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHhc
Q 026478 168 VPKEKSSEAWSMISKLTE------EKT-SAMQQNQKLRQELEFVRKEISKSRAGGFSTVFVLLIGLLGILVGYLVK 236 (238)
Q Consensus 168 ~~~~k~~e~~~~i~~L~e------E~~-~~~~q~~~L~~e~~~l~~~~~~~~~~g~~~~~v~~v~ll~~llG~~~~ 236 (238)
+|....+|+..-+..|.. |++ .+-=|..+|.+..+.|+....+...+-=-+.-=.++.+||-++.|.|.
T Consensus 33 eL~~av~ELRdivvslDKd~Av~sEKqshi~yQi~~Lee~i~aL~~~n~ked~~KkD~vEkVfmivLGAvvtyVFs 108 (111)
T PHA02414 33 ELEVAVAELRDIVVSLDKDVAVNSEKQSHIYYQIERLEEKISALAESNKKEDTEKKDTVEKVFMIVLGAVVTYVFS 108 (111)
T ss_pred HHHHHHHHHHHHHHHhhhHhhhhHHHhhHHHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 455566677766666543 222 244456666666777765433221111111112345556666666664
No 101
>PRK04325 hypothetical protein; Provisional
Probab=58.80 E-value=30 Score=24.50 Aligned_cols=42 Identities=12% Similarity=0.104 Sum_probs=31.2
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 166 LEVPKEKSSEAWSMISKLTEEKTSAMQQNQKLRQELEFVRKE 207 (238)
Q Consensus 166 ~~~~~~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~~ 207 (238)
..+|+.+++=....|..|.+......++...|+.++..|..+
T Consensus 11 i~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~r 52 (74)
T PRK04325 11 ITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQ 52 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888788888888887777777777777777766544
No 102
>PRK02119 hypothetical protein; Provisional
Probab=58.22 E-value=33 Score=24.26 Aligned_cols=41 Identities=10% Similarity=0.114 Sum_probs=27.7
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 167 EVPKEKSSEAWSMISKLTEEKTSAMQQNQKLRQELEFVRKE 207 (238)
Q Consensus 167 ~~~~~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~~ 207 (238)
.+|+.+++=....|..|++......++...|+.++..|+.+
T Consensus 12 ~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~r 52 (73)
T PRK02119 12 AELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANK 52 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777667777777776666666667777776666544
No 103
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=57.72 E-value=16 Score=33.38 Aligned_cols=11 Identities=0% Similarity=0.114 Sum_probs=6.7
Q ss_pred eEEEEeEEEEe
Q 026478 116 VEEFKLRVVYI 126 (238)
Q Consensus 116 i~~~kL~v~~~ 126 (238)
|+.+.++|.+.
T Consensus 6 ~~~~~~~~~~~ 16 (420)
T PF07407_consen 6 IQMKNMKCTLK 16 (420)
T ss_pred eecccceeEEE
Confidence 45566667665
No 104
>PF03173 CHB_HEX: Putative carbohydrate binding domain; InterPro: IPR004866 This domain represents the N-terminal domain in chitobiases and beta-hexosaminidases 3.2.1.52 from EC. Chitobiases degrade chitin, which forms the exoskeleton in insects and crustaceans, and which is one of the most abundant polysaccharides on earth []. Beta-hexosaminidases are composed of either a HexA/HexB heterodimer or a HexB homodimer, and can hydrolyse diverse substrates, including GM(2)-gangliosides; mutations in this enzyme are associated with Tay-Sachs disease []. HexB is structurally similar to chitobiase, consisting of a beta sandwich structure; this structure is similar to that found in the cellulose-binding domain of cellulase from Cellulomonas fimi (IPR001919 from INTERPRO), suggesting that it may function as a carbohydrate-binding domain.; GO: 0030246 carbohydrate binding; PDB: 1C7T_A 1QBA_A 1QBB_A 1C7S_A.
Probab=57.07 E-value=14 Score=30.30 Aligned_cols=34 Identities=21% Similarity=0.336 Sum_probs=26.2
Q ss_pred EEEeecCCCcEEEeCCcee--eCCCCEEEEEEEecc
Q 026478 40 FKVKTTNPKKYCVRPNTGI--ILPRTSCAVTVTMQA 73 (238)
Q Consensus 40 FKVKTT~p~~Y~VrP~~G~--I~P~~s~~V~V~lq~ 73 (238)
|+|.--+-+.|++.|.-|+ |.||+++.|.+.-..
T Consensus 69 f~i~hinGDl~kl~Pt~~F~gl~~Ges~~I~~~~~~ 104 (164)
T PF03173_consen 69 FKITHINGDLHKLTPTAGFKGLAPGESLEIPFVGEY 104 (164)
T ss_dssp EEEEE-STTEEEEEE-TT---B-TTEEEEEEEEEES
T ss_pred eEEEEEcCeEEEEeECCCCCccCCCCEEEEEEEccc
Confidence 7788778889999999998 899999999998654
No 105
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=56.51 E-value=37 Score=27.96 Aligned_cols=15 Identities=13% Similarity=0.399 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHh
Q 026478 221 VLLIGLLGILVGYLV 235 (238)
Q Consensus 221 v~~v~ll~~llG~~~ 235 (238)
-++++++++++||+-
T Consensus 160 g~i~~~~a~~la~~r 174 (177)
T PF07798_consen 160 GVIFGCVALVLAILR 174 (177)
T ss_pred HHHHHHHHHHHHHHH
Confidence 356677788888863
No 106
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=56.40 E-value=92 Score=24.08 Aligned_cols=27 Identities=22% Similarity=0.368 Sum_probs=22.8
Q ss_pred cccCCCceeEEEEEEcCCCCeEEEEEe
Q 026478 17 PFELKKQSSCSMQLTNKTDKFVAFKVK 43 (238)
Q Consensus 17 ~~~~~~~~~~~l~L~N~s~~~vaFKVK 43 (238)
....+....-.++|+|.+++.+-|+|.
T Consensus 22 ~~~P~q~~~l~v~i~N~s~~~~tv~v~ 48 (121)
T PF06030_consen 22 KVKPGQKQTLEVRITNNSDKEITVKVS 48 (121)
T ss_pred EeCCCCEEEEEEEEEeCCCCCEEEEEE
Confidence 345677788899999999999999985
No 107
>PF02753 PapD_C: Pili assembly chaperone PapD, C-terminal domain; InterPro: IPR016148 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the C-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of eight strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2UY7_C 2UY6_A 2W07_A 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 1PDK_A 2XG4_A ....
Probab=56.39 E-value=12 Score=25.51 Aligned_cols=43 Identities=23% Similarity=0.311 Sum_probs=26.9
Q ss_pred EEEEcCCCCeEEEE-EeecCCCcEEEeCCceeeCCCCEEEEEEE
Q 026478 28 MQLTNKTDKFVAFK-VKTTNPKKYCVRPNTGIILPRTSCAVTVT 70 (238)
Q Consensus 28 l~L~N~s~~~vaFK-VKTT~p~~Y~VrP~~G~I~P~~s~~V~V~ 70 (238)
|+++|+|.-+|.|- ++....++=..-...++|.|+++..+.+.
T Consensus 1 L~v~NpTPy~vtl~~~~~~~~~~~~~~~~~~mi~P~s~~~~~~~ 44 (68)
T PF02753_consen 1 LTVKNPTPYYVTLSSLKLNGGGKKKKIDNSGMIAPFSSKSFPLP 44 (68)
T ss_dssp EEEEE-SSS-EEEEEEEETHHHCCEECCCETEE-TTEEEEEETS
T ss_pred CEEECCCCcEEEEEeeeecccccccccCCceEECCCCceEEecc
Confidence 68999999999886 44443333223344449999999888763
No 108
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=56.28 E-value=26 Score=25.12 Aligned_cols=26 Identities=27% Similarity=0.388 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 181 SKLTEEKTSAMQQNQKLRQELEFVRK 206 (238)
Q Consensus 181 ~~L~eE~~~~~~q~~~L~~e~~~l~~ 206 (238)
..|++|...|.++.++|..|+..+++
T Consensus 3 ~ei~eEn~~Lk~eiqkle~ELq~~~~ 28 (76)
T PF07334_consen 3 HEIQEENARLKEEIQKLEAELQQNKR 28 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555655666666666666655444
No 109
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=55.72 E-value=26 Score=31.04 Aligned_cols=37 Identities=24% Similarity=0.353 Sum_probs=29.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026478 172 KSSEAWSMISKLTEEKTSAMQQNQKLRQELEFVRKEI 208 (238)
Q Consensus 172 k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~~~ 208 (238)
+..+....+.-|..|+..++.++++|++|+..+|+..
T Consensus 216 ~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~ 252 (269)
T KOG3119|consen 216 KEDEMAHRVAELEKENEALRTQVEQLKKELATLRRLF 252 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3356666777888899999999999999999887654
No 110
>PF00553 CBM_2: Cellulose binding domain; InterPro: IPR001919 The microbial degradation of cellulose and xylans requires several types of enzyme such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) []. Structurally, cellulases and xylanases generally consist of a catalytic domain joined to a cellulose-binding domain (CBD) by a short linker sequence rich in proline and/or hydroxy-amino acids. The CBD domain is found either at the N-terminal or at the C-terminal extremity of these enzymes. As it is shown in the following schematic representation, there are two conserved cysteines in this CBD domain - one at each extremity of the domain - which have been shown [] to be involved in a disulphide bond. There are also four conserved tryptophan, two are involved in cellulose binding. The CBD of a number of bacterial cellulases has been shown to consist of about 105 amino acid residues [, ]. +-------------------------------------------------+ | | xCxxxxWxxxxxNxxxWxxxxxxxWxxxxxxxxWNxxxxxGxxxxxxxxxxCx 'C': conserved cysteine involved in a disulphide bond. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 2CZN_A 2CWR_A 1HEH_C 1HEJ_C 3NDZ_E 3NDY_E 2XBD_A 1E5C_A 1XBD_A 1E5B_A ....
Probab=55.57 E-value=33 Score=25.42 Aligned_cols=50 Identities=20% Similarity=0.235 Sum_probs=33.9
Q ss_pred eeEEEEEEcCCCCeEE-EEEeecCC-----------------CcEEEeCCc--eeeCCCCEEEEEEEecc
Q 026478 24 SSCSMQLTNKTDKFVA-FKVKTTNP-----------------KKYCVRPNT--GIILPRTSCAVTVTMQA 73 (238)
Q Consensus 24 ~~~~l~L~N~s~~~va-FKVKTT~p-----------------~~Y~VrP~~--G~I~P~~s~~V~V~lq~ 73 (238)
....|+|+|.++.++. ++|.=+-| ..|.|+|.. +.|+||+++.+-+....
T Consensus 15 f~~~v~v~N~~~~~i~~W~v~~~~~~~~~i~~~Wna~~s~~g~~~~v~~~~wn~~i~~G~s~~~Gf~~~~ 84 (101)
T PF00553_consen 15 FQGEVTVTNNGSSPINGWTVTFTFPSGQTITSSWNATVSQSGNTVTVTNPSWNGTIAPGGSVTFGFQASG 84 (101)
T ss_dssp EEEEEEEEESSSSTEESEEEEEEESTTEEEEEEESCEEEEETTEEEEEESSTCSEEEESEEEEEEEEEEE
T ss_pred eEEEEEEEECCCCccCCEEEEEEeCCCCEEeeeeccEEEecCCEEEEEcCCcCcccCCCCeEEEEEEEeC
Confidence 4567888888877652 44332222 568888763 79999999887776544
No 111
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=54.88 E-value=53 Score=22.14 Aligned_cols=33 Identities=12% Similarity=0.132 Sum_probs=16.1
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 170 KEKSSEAWSMISKLTEEKTSAMQQNQKLRQELE 202 (238)
Q Consensus 170 ~~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~ 202 (238)
..++..+...|.+|..+.+.++.+....++|-.
T Consensus 9 s~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAa 41 (56)
T PF04728_consen 9 SSDVQTLNSKVDQLSSDVNALRADVQAAKEEAA 41 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555544444444433
No 112
>PF02883 Alpha_adaptinC2: Adaptin C-terminal domain; InterPro: IPR008152 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. GGAs (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) are a family of monomeric clathrin adaptor proteins that are conserved from yeasts to humans. GGAs regulate clathrin-mediated the transport of proteins (such as mannose 6-phosphate receptors) from the TGN to endosomes and lysosomes through interactions with TGN-sorting receptors, sometimes in conjunction with AP-1 [, ]. GGAs bind cargo, membranes, clathrin and accessory factors. GGA1, GGA2 and GGA3 all contain a domain homologous to the ear domain of gamma-adaptin. GGAs are composed of a single polypeptide with four domains: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The VHS domain is responsible for endocytosis and signal transduction, recognising transmembrane cargo through the ACLL sequence in the cytoplasmic domains of sorting receptors []. The GAT domain (also found in Tom1 proteins) interacts with ARF (ADP-ribosylation factor) to regulate membrane trafficking [], and with ubiquitin for receptor sorting []. The hinge region contains a clathrin box for recognition and binding to clathrin, similar to that found in AP adaptins. The GAE domain is similar to the AP gamma-adaptin ear domain, and is responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. This entry represents a beta-sandwich structural motif found in the appendage (ear) domain of alpha-, beta- and gamma-adaptin from AP clathrin adaptor complexes, and the GAE (gamma-adaptin ear) domain of GGA adaptor proteins. These domains have an immunoglobulin-like beta-sandwich fold containing 7 or 8 strands in 2 beta-sheets in a Greek key topology [, ]. Although these domains share a similar fold, there is little sequence identity between the alpha/beta-adaptins and gamma-adaptin/GAE. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 3MNM_B 3ZY7_B 1GYU_A 1GYW_B 2A7B_A 1GYV_A 2E9G_A 1E42_B 2G30_A 2IV9_B ....
Probab=54.51 E-value=34 Score=25.53 Aligned_cols=73 Identities=18% Similarity=0.301 Sum_probs=42.9
Q ss_pred CCceeEEEEEEcCCCCeEE-EEEeecCCC--cEEEeCC-ceeeCCCCEEEEEEEeccccc--CCCCCCCCCeEEEEEEeC
Q 026478 21 KKQSSCSMQLTNKTDKFVA-FKVKTTNPK--KYCVRPN-TGIILPRTSCAVTVTMQAQKE--APPDFQCKDKFLLLSVVA 94 (238)
Q Consensus 21 ~~~~~~~l~L~N~s~~~va-FKVKTT~p~--~Y~VrP~-~G~I~P~~s~~V~V~lq~~~~--~p~~~~~kdKFlVqs~~v 94 (238)
.....-.++..|.+..++- |.+.-..|+ ...+.|. ...|.|+..+.-.+.+.. .. .+.....+=|+.|.+..-
T Consensus 23 ~~~~~i~~~f~N~s~~~it~f~~q~avpk~~~l~l~~~s~~~i~p~~~i~Q~~~v~~-~~~~~~~~~~l~~~~~vsy~~~ 101 (115)
T PF02883_consen 23 PNQGRIKLTFGNKSSQPITNFSFQAAVPKSFKLQLQPPSSSTIPPGQQITQVIKVEN-SPFSEPTPKPLKPRLRVSYNVG 101 (115)
T ss_dssp TTEEEEEEEEEE-SSS-BEEEEEEEEEBTTSEEEEEESS-SSB-TTTEEEEEEEEEE-SS-BSTTSSTTEEEEEEEEEET
T ss_pred CCEEEEEEEEEECCCCCcceEEEEEEeccccEEEEeCCCCCeeCCCCeEEEEEEEEE-eecccCCCCCcCeEEEEEEEEC
Confidence 5667888999999987766 776665555 4555566 459999888776665544 11 122223445555655543
No 113
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=54.24 E-value=34 Score=25.00 Aligned_cols=33 Identities=21% Similarity=0.380 Sum_probs=23.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 172 KSSEAWSMISKLTEEKTSAMQQNQKLRQELEFV 204 (238)
Q Consensus 172 k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l 204 (238)
+..++..++.+++.|...+..+|.+|+-|...+
T Consensus 36 ~~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l 68 (97)
T PF04999_consen 36 QSRQLFYELQQLEKEIDQLQEENERLRLEIATL 68 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345666677888888888888888887776644
No 114
>PF14235 DUF4337: Domain of unknown function (DUF4337)
Probab=54.22 E-value=30 Score=28.16 Aligned_cols=27 Identities=15% Similarity=0.218 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 174 SEAWSMISKLTEEKTSAMQQNQKLRQE 200 (238)
Q Consensus 174 ~e~~~~i~~L~eE~~~~~~q~~~L~~e 200 (238)
......|.++++|.....++.+.|+++
T Consensus 69 ~~~~~~i~~Y~~~~~~~~~e~~~l~~~ 95 (157)
T PF14235_consen 69 AAYQKKIARYKKEKARYKSEAEELEAK 95 (157)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666666544
No 115
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=54.00 E-value=33 Score=26.04 Aligned_cols=38 Identities=29% Similarity=0.336 Sum_probs=28.2
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 168 VPKEKSSEAWSMISKLTEEKTSAMQQNQKLRQELEFVR 205 (238)
Q Consensus 168 ~~~~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~ 205 (238)
+|++++.+..+.+-++..|..++.-.|++|...+..|.
T Consensus 30 ~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ 67 (102)
T PF10205_consen 30 ELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQ 67 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677888888888888888888777777755555443
No 116
>PRK14143 heat shock protein GrpE; Provisional
Probab=53.75 E-value=58 Score=28.45 Aligned_cols=39 Identities=13% Similarity=0.174 Sum_probs=26.0
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026478 170 KEKSSEAWSMISKLTEEKTSAMQQNQKLRQELEFVRKEI 208 (238)
Q Consensus 170 ~~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~~~ 208 (238)
..+..++.+++..|+++...+..+..+++.+.+.+|+..
T Consensus 66 ~~~~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~ 104 (238)
T PRK14143 66 AARLAQLEQELESLKQELEELNSQYMRIAADFDNFRKRT 104 (238)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677777777777777666666777777666554
No 117
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=53.73 E-value=69 Score=22.99 Aligned_cols=21 Identities=19% Similarity=0.377 Sum_probs=14.3
Q ss_pred eeEEEEEEcCCCCeEEEEEee
Q 026478 24 SSCSMQLTNKTDKFVAFKVKT 44 (238)
Q Consensus 24 ~~~~l~L~N~s~~~vaFKVKT 44 (238)
+.-.|+|+|.++++|-+..-|
T Consensus 2 v~~~l~v~N~s~~~v~l~f~s 22 (82)
T PF12690_consen 2 VEFTLTVTNNSDEPVTLQFPS 22 (82)
T ss_dssp EEEEEEEEE-SSS-EEEEESS
T ss_pred EEEEEEEEeCCCCeEEEEeCC
Confidence 456788889888888887754
No 118
>TIGR03142 cytochro_ccmI cytochrome c-type biogenesis protein CcmI. This TPR repeat-containing protein is the CcmI protein (also called CycH) of c-type cytochrome biogenesis. CcmI is thought to act as an apo-cytochrome c chaperone. This model describes the N-terminal region of the protein, Members of this protein family
Probab=53.53 E-value=52 Score=25.13 Aligned_cols=10 Identities=30% Similarity=0.511 Sum_probs=5.2
Q ss_pred HHHHHHHHHH
Q 026478 193 QNQKLRQELE 202 (238)
Q Consensus 193 q~~~L~~e~~ 202 (238)
|-+.++.|+.
T Consensus 61 e~~~~~~El~ 70 (117)
T TIGR03142 61 EAEAARAELQ 70 (117)
T ss_pred HHHHHHHHHH
Confidence 3445555555
No 119
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=53.25 E-value=88 Score=22.95 Aligned_cols=32 Identities=16% Similarity=0.104 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 173 SSEAWSMISKLTEEKTSAMQQNQKLRQELEFV 204 (238)
Q Consensus 173 ~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l 204 (238)
+.++.+++.+..+++.....+.+.|++....|
T Consensus 3 Le~l~~e~e~~~~kl~q~e~~~k~L~nr~k~l 34 (86)
T PF12958_consen 3 LEELQAEIEKAEKKLEQAEHKIKQLENRKKKL 34 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777777777777777777777777766655
No 120
>COG1422 Predicted membrane protein [Function unknown]
Probab=52.51 E-value=37 Score=28.88 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=17.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHH
Q 026478 171 EKSSEAWSMISKLTEEKTSAMQQN 194 (238)
Q Consensus 171 ~k~~e~~~~i~~L~eE~~~~~~q~ 194 (238)
++..+.+.....+++|..++++++
T Consensus 72 ekm~~~qk~m~efq~e~~eA~~~~ 95 (201)
T COG1422 72 EKMKELQKMMKEFQKEFREAQESG 95 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
Confidence 566777777777887777777755
No 121
>PF11346 DUF3149: Protein of unknown function (DUF3149); InterPro: IPR021494 This bacterial family of proteins has no known function.
Probab=52.04 E-value=16 Score=23.19 Aligned_cols=18 Identities=22% Similarity=0.586 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHhcC
Q 026478 220 FVLLIGLLGILVGYLVKT 237 (238)
Q Consensus 220 ~v~~v~ll~~llG~~~~~ 237 (238)
+++.+++.+++.+||++|
T Consensus 19 I~~~igm~~~~~~~F~~k 36 (42)
T PF11346_consen 19 IVFTIGMGVFFIRYFIRK 36 (42)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 346677888888888876
No 122
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=51.90 E-value=98 Score=26.84 Aligned_cols=22 Identities=14% Similarity=0.211 Sum_probs=12.6
Q ss_pred CCccHHHHHHHHHHHHHHHHHh
Q 026478 214 GGFSTVFVLLIGLLGILVGYLV 235 (238)
Q Consensus 214 ~g~~~~~v~~v~ll~~llG~~~ 235 (238)
.|+.+|+++++.++.|+.-++|
T Consensus 226 ~~~~~~~~i~~v~~~Fi~mvl~ 247 (251)
T PF09753_consen 226 WGCWTWLMIFVVIIVFIMMVLF 247 (251)
T ss_pred ccHHHHHHHHHHHHHHHHHHHH
Confidence 4555565555555556655554
No 123
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=51.83 E-value=49 Score=23.16 Aligned_cols=15 Identities=53% Similarity=0.733 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHH
Q 026478 193 QNQKLRQELEFVRKE 207 (238)
Q Consensus 193 q~~~L~~e~~~l~~~ 207 (238)
++.+|+.|++.|++.
T Consensus 48 e~~~Lk~E~e~L~~e 62 (69)
T PF14197_consen 48 ENNKLKEENEALRKE 62 (69)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344455555555443
No 124
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=51.24 E-value=25 Score=27.19 Aligned_cols=26 Identities=35% Similarity=0.496 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 176 AWSMISKLTEEKTSAMQQNQKLRQEL 201 (238)
Q Consensus 176 ~~~~i~~L~eE~~~~~~q~~~L~~e~ 201 (238)
...-|..|..|++.+.+||++|++|+
T Consensus 94 sLq~i~~L~nE~n~L~eEN~~L~eEl 119 (120)
T PF10482_consen 94 SLQHIFELTNEMNTLKEENKKLKEEL 119 (120)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 34457888899999999999998875
No 125
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=50.88 E-value=48 Score=22.34 Aligned_cols=31 Identities=16% Similarity=0.189 Sum_probs=17.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 172 KSSEAWSMISKLTEEKTSAMQQNQKLRQELE 202 (238)
Q Consensus 172 k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~ 202 (238)
|++++...|+.|......+..+...++.+..
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~ 34 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRADVQ 34 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666665555555555555544
No 126
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=50.88 E-value=96 Score=26.94 Aligned_cols=25 Identities=12% Similarity=0.337 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 182 KLTEEKTSAMQQNQKLRQELEFVRK 206 (238)
Q Consensus 182 ~L~eE~~~~~~q~~~L~~e~~~l~~ 206 (238)
+++.|+...+.|.+.++.++..|..
T Consensus 166 ~ie~~L~~v~~eIe~~~~~~~~l~~ 190 (262)
T PF14257_consen 166 EIERELSRVRSEIEQLEGQLKYLDD 190 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444443
No 127
>PRK02898 cobalt transport protein CbiN; Provisional
Probab=50.33 E-value=9.1 Score=28.92 Aligned_cols=21 Identities=29% Similarity=0.436 Sum_probs=11.9
Q ss_pred ccHHHHHHHHHHHHHHHHHhc
Q 026478 216 FSTVFVLLIGLLGILVGYLVK 236 (238)
Q Consensus 216 ~~~~~v~~v~ll~~llG~~~~ 236 (238)
=|++|++=.+|=+.+|||+|+
T Consensus 67 ESLLFaLQAAiGAgiIgY~lG 87 (100)
T PRK02898 67 ESLLFALQAALGAGIIGYILG 87 (100)
T ss_pred HHHHHHHHHHHhhhhhheeee
Confidence 345555555555666666554
No 128
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=50.25 E-value=58 Score=23.98 Aligned_cols=30 Identities=20% Similarity=0.338 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 176 AWSMISKLTEEKTSAMQQNQKLRQELEFVR 205 (238)
Q Consensus 176 ~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~ 205 (238)
-...|..|+.+...+.++++.|+.+++..|
T Consensus 47 wek~v~~L~~e~~~l~~E~e~L~~~l~~e~ 76 (87)
T PF12709_consen 47 WEKKVDELENENKALKRENEQLKKKLDTER 76 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666666666766666665443
No 129
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=50.24 E-value=38 Score=29.34 Aligned_cols=9 Identities=44% Similarity=0.630 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 026478 180 ISKLTEEKT 188 (238)
Q Consensus 180 i~~L~eE~~ 188 (238)
+.++++|..
T Consensus 122 i~k~r~e~~ 130 (230)
T PF03904_consen 122 IKKVREENK 130 (230)
T ss_pred HHHHHHHHH
Confidence 333333333
No 130
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=50.07 E-value=40 Score=29.56 Aligned_cols=26 Identities=31% Similarity=0.289 Sum_probs=12.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 172 KSSEAWSMISKLTEEKTSAMQQNQKL 197 (238)
Q Consensus 172 k~~e~~~~i~~L~eE~~~~~~q~~~L 197 (238)
...|...+|..|.||...|+-+|+.|
T Consensus 91 Rm~eme~~i~dL~een~~L~~en~~L 116 (292)
T KOG4005|consen 91 RMEEMEYEIKDLTEENEILQNENDSL 116 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555554444444333
No 131
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=49.82 E-value=37 Score=29.23 Aligned_cols=23 Identities=17% Similarity=0.329 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 026478 180 ISKLTEEKTSAMQQNQKLRQELE 202 (238)
Q Consensus 180 i~~L~eE~~~~~~q~~~L~~e~~ 202 (238)
..+++++...+..|-+.+++|.+
T Consensus 174 Le~~~~~~~al~Kq~e~~~~Eyd 196 (216)
T KOG1962|consen 174 LEKAQKKVDALKKQSEGLQDEYD 196 (216)
T ss_pred HHHHHHHHHHHHHHHHHcccHHH
Confidence 33333333344444444444444
No 132
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=49.48 E-value=1.1e+02 Score=29.13 Aligned_cols=52 Identities=10% Similarity=0.176 Sum_probs=38.2
Q ss_pred ceeEEEEEEcCCCCeEEEEEeecCCCcEEEe-C-CceeeCCCCEEEEEEEeccc
Q 026478 23 QSSCSMQLTNKTDKFVAFKVKTTNPKKYCVR-P-NTGIILPRTSCAVTVTMQAQ 74 (238)
Q Consensus 23 ~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~Vr-P-~~G~I~P~~s~~V~V~lq~~ 74 (238)
.-..+++|.|.+.++..|.++........+. + +.=.|+||+..++.|.+...
T Consensus 347 ~N~Y~~~i~Nk~~~~~~~~l~v~g~~~~~~~~~~~~i~v~~g~~~~~~v~v~~~ 400 (434)
T TIGR02745 347 ENTYTLKILNKTEQPHEYYLSVLGLPGIKIEGPGAPIHVKAGEKVKLPVFLRTP 400 (434)
T ss_pred EEEEEEEEEECCCCCEEEEEEEecCCCcEEEcCCceEEECCCCEEEEEEEEEec
Confidence 3568999999999988888887655443333 2 23479999999888887654
No 133
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=49.46 E-value=50 Score=27.11 Aligned_cols=29 Identities=28% Similarity=0.379 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 177 WSMISKLTEEKTSAMQQNQKLRQELEFVR 205 (238)
Q Consensus 177 ~~~i~~L~eE~~~~~~q~~~L~~e~~~l~ 205 (238)
..+-.+|++|...+.++|+.|++|+..|.
T Consensus 103 ~~e~~~l~~e~~~l~~~~e~Le~e~~~L~ 131 (161)
T TIGR02894 103 QKENERLKNQNESLQKRNEELEKELEKLR 131 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555443
No 134
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=49.39 E-value=28 Score=30.30 Aligned_cols=21 Identities=33% Similarity=0.161 Sum_probs=8.9
Q ss_pred cccccchHHHHHHHHHHHHHH
Q 026478 167 EVPKEKSSEAWSMISKLTEEK 187 (238)
Q Consensus 167 ~~~~~k~~e~~~~i~~L~eE~ 187 (238)
.++++|+.+..++-..|.+|+
T Consensus 138 ee~kekl~E~~~EkeeL~~el 158 (290)
T COG4026 138 EELKEKLEELQKEKEELLKEL 158 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444433333333
No 135
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=49.34 E-value=47 Score=25.51 Aligned_cols=29 Identities=17% Similarity=0.243 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 179 MISKLTEEKTSAMQQNQKLRQELEFVRKE 207 (238)
Q Consensus 179 ~i~~L~eE~~~~~~q~~~L~~e~~~l~~~ 207 (238)
++.-|++++..+.+.|..|++|...||..
T Consensus 68 EVe~Lk~qI~eL~er~~~Le~EN~lLk~~ 96 (123)
T KOG4797|consen 68 EVEVLKEQIRELEERNSALERENSLLKTL 96 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44455555556666666666666666543
No 136
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=49.03 E-value=45 Score=29.23 Aligned_cols=34 Identities=18% Similarity=0.059 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Q 026478 174 SEAWSMISKLTEEKTSAMQQNQ---KLRQELEFVRKE 207 (238)
Q Consensus 174 ~e~~~~i~~L~eE~~~~~~q~~---~L~~e~~~l~~~ 207 (238)
.++.++..+|++|...+..++. .+++|..+||+.
T Consensus 72 ~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~l 108 (276)
T PRK13922 72 FDLREENEELKKELLELESRLQELEQLEAENARLREL 108 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555444444444 445666666654
No 137
>smart00637 CBD_II CBD_II domain.
Probab=49.02 E-value=83 Score=22.59 Aligned_cols=48 Identities=15% Similarity=0.196 Sum_probs=30.3
Q ss_pred eeEEEEEEcCCCCeE-----EEEEee-------------cCCCcEEEeCC--ceeeCCCCEEEEEEEe
Q 026478 24 SSCSMQLTNKTDKFV-----AFKVKT-------------TNPKKYCVRPN--TGIILPRTSCAVTVTM 71 (238)
Q Consensus 24 ~~~~l~L~N~s~~~v-----aFKVKT-------------T~p~~Y~VrP~--~G~I~P~~s~~V~V~l 71 (238)
....|+|+|.++.++ .|.+-- .....|.++|. .+.|.||+++.+-+..
T Consensus 8 ~~~~v~vtN~~~~~~~~W~v~~~~~~~~~i~~~Wn~~~~~~g~~~~~~~~~wn~~i~~G~s~~~gf~~ 75 (92)
T smart00637 8 FTANVTVTNTGSSAINGWTVTFDLPGGQTVTNSWNATVSQSGGHVTATNASWNGTIAPGGSVSFGFQG 75 (92)
T ss_pred EEEEEEEEeCCCCcccCeEEEEEcCCCcEEeeeEEEEEEecCCEEEEecCccccccCCCCEEEEEEEe
Confidence 346778888766443 333211 12336899865 4799999988876665
No 138
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=48.73 E-value=39 Score=22.96 Aligned_cols=26 Identities=35% Similarity=0.314 Sum_probs=12.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 173 SSEAWSMISKLTEEKTSAMQQNQKLR 198 (238)
Q Consensus 173 ~~e~~~~i~~L~eE~~~~~~q~~~L~ 198 (238)
+.+.-.+-.+|..|..++.+||..|+
T Consensus 28 Y~~vL~~R~~l~~e~~~L~~qN~eLr 53 (60)
T PF14775_consen 28 YNKVLLDRAALIQEKESLEQQNEELR 53 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444445455555554443
No 139
>PRK14750 kdpF potassium-transporting ATPase subunit F; Provisional
Probab=48.50 E-value=27 Score=20.20 Aligned_cols=18 Identities=39% Similarity=0.408 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 026478 219 VFVLLIGLLGILVGYLVK 236 (238)
Q Consensus 219 ~~v~~v~ll~~llG~~~~ 236 (238)
-.++...++.+++||+.+
T Consensus 4 ~vi~g~llv~lLl~YLvY 21 (29)
T PRK14750 4 SIVCGALLVLLLLGYLVY 21 (29)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345666777788888764
No 140
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=48.37 E-value=29 Score=33.27 Aligned_cols=32 Identities=19% Similarity=0.269 Sum_probs=24.6
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 168 VPKEKSSEAWSMISKLTEEKTSAMQQNQKLRQ 199 (238)
Q Consensus 168 ~~~~k~~e~~~~i~~L~eE~~~~~~q~~~L~~ 199 (238)
.|-.+++++..++.+|..|.+.+++||++|++
T Consensus 63 Tlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~ 94 (472)
T TIGR03752 63 TLVAEVKELRKRLAKLISENEALKAENERLQK 94 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567778888888888888888888888865
No 141
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=47.80 E-value=46 Score=25.51 Aligned_cols=28 Identities=21% Similarity=0.254 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 175 EAWSMISKLTEEKTSAMQQNQKLRQELE 202 (238)
Q Consensus 175 e~~~~i~~L~eE~~~~~~q~~~L~~e~~ 202 (238)
++.+++.+|+.++..+..|++-|++-..
T Consensus 75 ~~~~ei~~L~~el~~L~~E~diLKKa~~ 102 (121)
T PRK09413 75 AAMKQIKELQRLLGKKTMENELLKEAVE 102 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555554444
No 142
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=47.79 E-value=57 Score=22.83 Aligned_cols=18 Identities=39% Similarity=0.565 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 026478 188 TSAMQQNQKLRQELEFVR 205 (238)
Q Consensus 188 ~~~~~q~~~L~~e~~~l~ 205 (238)
..+..+++.|++|++.+|
T Consensus 50 ~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 50 NKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 344444555555555443
No 143
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=47.67 E-value=18 Score=25.82 Aligned_cols=18 Identities=17% Similarity=0.702 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 026478 219 VFVLLIGLLGILVGYLVK 236 (238)
Q Consensus 219 ~~v~~v~ll~~llG~~~~ 236 (238)
..+++.+++||++||+..
T Consensus 15 ~il~~~~iisfi~Gy~~q 32 (76)
T PF06645_consen 15 YILIISAIISFIVGYITQ 32 (76)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345688899999999864
No 144
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=47.66 E-value=73 Score=21.81 Aligned_cols=35 Identities=23% Similarity=0.264 Sum_probs=15.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 172 KSSEAWSMISKLTEEKTSAMQQNQKLRQELEFVRK 206 (238)
Q Consensus 172 k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~ 206 (238)
.+.+..+.-..+...++....+|..|..++..|++
T Consensus 19 EL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~ 53 (61)
T PF08826_consen 19 ELTKVKSANLAFESKLQEAEKRNRELEQEIERLKK 53 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333444444455555555554443
No 145
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=47.60 E-value=36 Score=27.24 Aligned_cols=42 Identities=24% Similarity=0.222 Sum_probs=31.9
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 166 LEVPKEKSSEAWSMISKLTEEKTSAMQQNQKLRQELEFVRKE 207 (238)
Q Consensus 166 ~~~~~~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~~ 207 (238)
++.++++++++.+....+..|+.+|...+..|..+++.+...
T Consensus 16 ~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~ 57 (143)
T PF12718_consen 16 AEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQ 57 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777888888888888888888888888887766544
No 146
>PRK00846 hypothetical protein; Provisional
Probab=47.20 E-value=58 Score=23.39 Aligned_cols=42 Identities=12% Similarity=0.085 Sum_probs=28.2
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 166 LEVPKEKSSEAWSMISKLTEEKTSAMQQNQKLRQELEFVRKE 207 (238)
Q Consensus 166 ~~~~~~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~~ 207 (238)
..+|+.+++=....|..|++......++...|+.++..|..+
T Consensus 15 i~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~r 56 (77)
T PRK00846 15 LVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLED 56 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777667777777777776667777777776655443
No 147
>PF06612 DUF1146: Protein of unknown function (DUF1146); InterPro: IPR009526 Members of this protein family are small, typically about 80 residues in length, and are highly hydrophobic. The gene is found so far only in a subset of the firmicutes in association with genes of the ATP synthase F1 complex or NADH-quinone oxidoreductase. This family includes YwzB from Bacillus subtilis.
Probab=47.15 E-value=16 Score=23.72 Aligned_cols=20 Identities=50% Similarity=0.610 Sum_probs=14.5
Q ss_pred cHHHHHHHHHHHHHHHHHhc
Q 026478 217 STVFVLLIGLLGILVGYLVK 236 (238)
Q Consensus 217 ~~~~v~~v~ll~~llG~~~~ 236 (238)
+.+.-+++.++|+.|||+..
T Consensus 25 ~~q~~ll~vllsIalGylvs 44 (48)
T PF06612_consen 25 VRQARLLIVLLSIALGYLVS 44 (48)
T ss_pred chHHHHHHHHHHHHHHHHHH
Confidence 33455778888999999864
No 148
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=47.11 E-value=1.1e+02 Score=25.52 Aligned_cols=53 Identities=13% Similarity=0.191 Sum_probs=34.9
Q ss_pred CCCceeEEEEEEcCCCCeEEEEEeecCC----CcEEEeC-----CceeeCCCCEEEEEEEecc
Q 026478 20 LKKQSSCSMQLTNKTDKFVAFKVKTTNP----KKYCVRP-----NTGIILPRTSCAVTVTMQA 73 (238)
Q Consensus 20 ~~~~~~~~l~L~N~s~~~vaFKVKTT~p----~~Y~VrP-----~~G~I~P~~s~~V~V~lq~ 73 (238)
.++.+...++|.|..+. -||.|+=++. +.|.+-- ....|+||+++.-.+++.|
T Consensus 36 ~g~~v~V~~~iyN~G~~-~A~dV~l~D~~fp~~~F~lvsG~~s~~~~~i~pg~~vsh~~vv~p 97 (181)
T PF05753_consen 36 EGEDVTVTYTIYNVGSS-AAYDVKLTDDSFPPEDFELVSGSLSASWERIPPGENVSHSYVVRP 97 (181)
T ss_pred CCcEEEEEEEEEECCCC-eEEEEEEECCCCCccccEeccCceEEEEEEECCCCeEEEEEEEee
Confidence 36789999999999766 7999998872 3333221 1345566666655555554
No 149
>PF14235 DUF4337: Domain of unknown function (DUF4337)
Probab=46.53 E-value=1.3e+02 Score=24.42 Aligned_cols=36 Identities=8% Similarity=0.039 Sum_probs=22.6
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 169 PKEKSSEAWSMISKLTEEKTSAMQQNQKLRQELEFV 204 (238)
Q Consensus 169 ~~~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l 204 (238)
.+.+..+-.+++.+++.|...+.++-+...++.+++
T Consensus 71 ~~~~i~~Y~~~~~~~~~e~~~l~~~A~~~e~~~d~~ 106 (157)
T PF14235_consen 71 YQKKIARYKKEKARYKSEAEELEAKAKEAEAESDHA 106 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 345556666677777777666666666665555543
No 150
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=46.34 E-value=57 Score=24.06 Aligned_cols=32 Identities=19% Similarity=0.247 Sum_probs=18.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 172 KSSEAWSMISKLTEEKTSAMQQNQKLRQELEF 203 (238)
Q Consensus 172 k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~ 203 (238)
++.++.+++..|++++..+..+.+.++.++..
T Consensus 71 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~ 102 (104)
T PF13600_consen 71 ELKELEEELEALEDELAALQDEIQALEAQIAF 102 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566666666666655555555555554443
No 151
>PRK07075 isochorismate-pyruvate lyase; Reviewed
Probab=45.93 E-value=1.2e+02 Score=22.56 Aligned_cols=34 Identities=9% Similarity=0.057 Sum_probs=24.5
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 166 LEVPKEKSSEAWSMISKLTEEKTSAMQQNQKLRQ 199 (238)
Q Consensus 166 ~~~~~~k~~e~~~~i~~L~eE~~~~~~q~~~L~~ 199 (238)
+.++..++++.+.+|..|=.||..+.++.-.++.
T Consensus 10 L~~lR~~ID~ID~~iv~LL~eR~~~~~~ia~~K~ 43 (101)
T PRK07075 10 LDDIREAIDRLDRDIIAALGRRMQYVKAASRFKP 43 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3456667778888888887777777777777654
No 152
>PF04678 DUF607: Protein of unknown function, DUF607; InterPro: IPR006769 This entry represents the C-terminal domain of coiled-coil domain containing protein 109.
Probab=45.45 E-value=91 Score=25.74 Aligned_cols=10 Identities=20% Similarity=0.079 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 026478 189 SAMQQNQKLR 198 (238)
Q Consensus 189 ~~~~q~~~L~ 198 (238)
.+++|.+.|+
T Consensus 68 ~~~~el~~le 77 (180)
T PF04678_consen 68 ELRQELAPLE 77 (180)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 153
>COG2991 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.33 E-value=24 Score=25.10 Aligned_cols=18 Identities=28% Similarity=0.754 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHhcCC
Q 026478 221 VLLIGLLGILVGYLVKTT 238 (238)
Q Consensus 221 v~~v~ll~~llG~~~~~~ 238 (238)
++++++++.-|||++++.
T Consensus 10 ~Fllvi~gMsiG~I~krk 27 (77)
T COG2991 10 IFLLVIAGMSIGYIFKRK 27 (77)
T ss_pred HHHHHHHHHhHhhheecc
Confidence 466778888999999863
No 154
>PF01763 Herpes_UL6: Herpesvirus UL6 like; InterPro: IPR002660 This family consists of various proteins from the Herpesviridae that are similar to Human herpesvirus 1 (HHV-1) UL6 virion protein. UL6 is essential for cleavage and packaging of the viral genome [].; GO: 0006323 DNA packaging
Probab=45.23 E-value=44 Score=32.85 Aligned_cols=40 Identities=23% Similarity=0.306 Sum_probs=34.7
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026478 169 PKEKSSEAWSMISKLTEEKTSAMQQNQKLRQELEFVRKEI 208 (238)
Q Consensus 169 ~~~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~~~ 208 (238)
|+.+..+...+|..|+++++.+.++.+.++.||.+.+...
T Consensus 368 Le~qIn~qf~tIe~Lk~~n~~~~~kl~~~e~~L~r~~~~~ 407 (557)
T PF01763_consen 368 LEGQINNQFDTIEDLKEENQDLEKKLRELESELSRYREEA 407 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4577889999999999999999999999999999887653
No 155
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=45.00 E-value=62 Score=22.85 Aligned_cols=24 Identities=25% Similarity=0.252 Sum_probs=12.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHH
Q 026478 171 EKSSEAWSMISKLTEEKTSAMQQN 194 (238)
Q Consensus 171 ~k~~e~~~~i~~L~eE~~~~~~q~ 194 (238)
.++++-+++|..|.+|-..|..+.
T Consensus 5 ~~l~EKDe~Ia~L~eEGekLSk~e 28 (74)
T PF12329_consen 5 KKLAEKDEQIAQLMEEGEKLSKKE 28 (74)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555544443333
No 156
>PF11772 EpuA: DNA-directed RNA polymerase subunit beta; InterPro: IPR024596 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. This entry represents the short 60-residue long bacterial family that is the beta subunit of the DNA-directed RNA polymerase, likely to be 2.7.7.6 from EC It is membrane-bound and is referred to by the name EpuA.
Probab=45.00 E-value=13 Score=24.16 Aligned_cols=15 Identities=33% Similarity=0.871 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHh
Q 026478 221 VLLIGLLGILVGYLV 235 (238)
Q Consensus 221 v~~v~ll~~llG~~~ 235 (238)
|++++++++++|-++
T Consensus 4 V~lL~~~~l~iGlmI 18 (47)
T PF11772_consen 4 VLLLAILALAIGLMI 18 (47)
T ss_pred HHHHHHHHHHHHHHe
Confidence 444555555555443
No 157
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=44.65 E-value=22 Score=34.67 Aligned_cols=34 Identities=12% Similarity=0.283 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026478 175 EAWSMISKLTEEKTSAMQQNQKLRQELEFVRKEI 208 (238)
Q Consensus 175 e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~~~ 208 (238)
+-.+++.-|+-.++++.+||+.|+.|-..||++.
T Consensus 299 KKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL 332 (655)
T KOG4343|consen 299 KKKEYMLGLEARLQALLSENEQLKKENATLKRQL 332 (655)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3445566777778889999999999999888874
No 158
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=44.65 E-value=81 Score=20.40 Aligned_cols=27 Identities=19% Similarity=0.241 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 181 SKLTEEKTSAMQQNQKLRQELEFVRKE 207 (238)
Q Consensus 181 ~~L~eE~~~~~~q~~~L~~e~~~l~~~ 207 (238)
..|+.+...+..|.+.||.-+...++.
T Consensus 2 ~aLrqQv~aL~~qv~~Lq~~fs~yKKa 28 (46)
T PF09006_consen 2 NALRQQVEALQGQVQRLQAAFSQYKKA 28 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555556666677777777666554
No 159
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=44.47 E-value=27 Score=23.63 Aligned_cols=22 Identities=27% Similarity=0.311 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 026478 183 LTEEKTSAMQQNQKLRQELEFV 204 (238)
Q Consensus 183 L~eE~~~~~~q~~~L~~e~~~l 204 (238)
++.+..++.++.+++++|++.+
T Consensus 46 ~r~~~~~~~k~l~~le~e~~~l 67 (68)
T PF06305_consen 46 LRRRIRRLRKELKKLEKELEQL 67 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4444445555555555555544
No 160
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=44.23 E-value=13 Score=34.77 Aligned_cols=24 Identities=29% Similarity=0.650 Sum_probs=18.5
Q ss_pred CCccHHHHHHHH-HHHHHHHHHhcC
Q 026478 214 GGFSTVFVLLIG-LLGILVGYLVKT 237 (238)
Q Consensus 214 ~g~~~~~v~~v~-ll~~llG~~~~~ 237 (238)
.|.++..|++|+ |+|||.-||+-+
T Consensus 370 aGIsvavvvvVgglvGfLcWwf~cr 394 (397)
T PF03302_consen 370 AGISVAVVVVVGGLVGFLCWWFICR 394 (397)
T ss_pred eeeeehhHHHHHHHHHHHhhheeec
Confidence 478887665554 999999999854
No 161
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=44.16 E-value=61 Score=24.84 Aligned_cols=31 Identities=16% Similarity=0.228 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 175 EAWSMISKLTEEKTSAMQQNQKLRQELEFVR 205 (238)
Q Consensus 175 e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~ 205 (238)
.+.+.+..+.++...+.+.+.++.+++..|+
T Consensus 84 ~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk 114 (118)
T PF13815_consen 84 QLEERLQELQQEIEKLKQKLKKQKEEIKKLK 114 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444
No 162
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=43.69 E-value=35 Score=26.23 Aligned_cols=27 Identities=30% Similarity=0.313 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 177 WSMISKLTEEKTSAMQQNQKLRQELEF 203 (238)
Q Consensus 177 ~~~i~~L~eE~~~~~~q~~~L~~e~~~ 203 (238)
...+..|+++...+.++++++++++..
T Consensus 79 ~~~~~~l~~~~~~~~~~~~~l~~~~~~ 105 (118)
T PF13815_consen 79 SSQLEQLEERLQELQQEIEKLKQKLKK 105 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555444443
No 163
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=43.44 E-value=33 Score=31.06 Aligned_cols=39 Identities=31% Similarity=0.305 Sum_probs=31.0
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 166 LEVPKEKSSEAWSMISKLTEEKTSAMQQNQKLRQELEFV 204 (238)
Q Consensus 166 ~~~~~~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l 204 (238)
+.++++|+.+|+-.-+.|..|+..+.-|...|++++..+
T Consensus 86 l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~ 124 (302)
T PF09738_consen 86 LAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEEL 124 (302)
T ss_pred HHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH
Confidence 346778888888888888888888888888887776644
No 164
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=42.81 E-value=64 Score=24.74 Aligned_cols=28 Identities=14% Similarity=0.296 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 179 MISKLTEEKTSAMQQNQKLRQELEFVRK 206 (238)
Q Consensus 179 ~i~~L~eE~~~~~~q~~~L~~e~~~l~~ 206 (238)
++.+|+.....|.+||+-|+-+.+.|..
T Consensus 73 e~~rlkkk~~~LeEENNlLklKievLLD 100 (108)
T cd07429 73 EVLRLKKKNQQLEEENNLLKLKIEVLLD 100 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666677777666554443
No 165
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=42.81 E-value=64 Score=22.40 Aligned_cols=33 Identities=21% Similarity=0.322 Sum_probs=16.7
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 170 KEKSSEAWSMISKLTEEKTSAMQQNQKLRQELE 202 (238)
Q Consensus 170 ~~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~ 202 (238)
+..-..+.+++..++.|+..+.+.|+.-+..++
T Consensus 20 ~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvE 52 (65)
T TIGR02449 20 KSENRLLRAQEKTWREERAQLLEKNEQARQKVE 52 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344455555555555555555555544444
No 166
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=42.66 E-value=80 Score=23.23 Aligned_cols=31 Identities=16% Similarity=0.159 Sum_probs=20.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 172 KSSEAWSMISKLTEEKTSAMQQNQKLRQELE 202 (238)
Q Consensus 172 k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~ 202 (238)
++.++..++.+|.+|...+..|....+.+..
T Consensus 24 k~~ka~~~~~kL~~en~qlk~Ek~~~~~qvk 54 (87)
T PF10883_consen 24 KVKKAKKQNAKLQKENEQLKTEKAVAETQVK 54 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777776666666665555555
No 167
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=42.23 E-value=1.4e+02 Score=21.91 Aligned_cols=52 Identities=17% Similarity=0.283 Sum_probs=32.3
Q ss_pred EEeCCeeeecccCCCceeEEEEEEcCCCCeEEEEEeecCCCcEEEeCCceeeCCCCEEEEEEEe
Q 026478 8 NIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTVTM 71 (238)
Q Consensus 8 ~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~VrP~~G~I~P~~s~~V~V~l 71 (238)
..+|+++..+. ++ ...|+++|.....-.|-+..- . -...|.||++..+.++.
T Consensus 31 ~f~P~~i~v~~--G~--~v~l~~~N~~~~~h~~~i~~~-----~---~~~~l~~g~~~~~~f~~ 82 (104)
T PF13473_consen 31 GFSPSTITVKA--GQ--PVTLTFTNNDSRPHEFVIPDL-----G---ISKVLPPGETATVTFTP 82 (104)
T ss_dssp EEES-EEEEET--TC--EEEEEEEE-SSS-EEEEEGGG-----T---EEEEE-TT-EEEEEEEE
T ss_pred eEecCEEEEcC--CC--eEEEEEEECCCCcEEEEECCC-----c---eEEEECCCCEEEEEEcC
Confidence 56677776543 32 346999999988888877651 1 12679999999999853
No 168
>PRK09039 hypothetical protein; Validated
Probab=41.92 E-value=39 Score=30.98 Aligned_cols=35 Identities=20% Similarity=0.235 Sum_probs=19.6
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 168 VPKEKSSEAWSMISKLTEEKTSAMQQNQKLRQELE 202 (238)
Q Consensus 168 ~~~~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~ 202 (238)
+.+..++++..+|..|+.|+..+++|...|+.+++
T Consensus 127 ~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~ 161 (343)
T PRK09039 127 SEKQVSARALAQVELLNQQIAALRRQLAALEAALD 161 (343)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555666666666666666655544444
No 169
>PF07963 N_methyl: Prokaryotic N-terminal methylation motif; InterPro: IPR012902 This short motif directs methylation of the conserved phenylalanine residue. It is most often found at the N terminus of pilins and other proteins involved in secretion, see IPR001082 from INTERPRO, IPR010271 from INTERPRO, IPR003413 from INTERPRO and IPR011453 from INTERPRO. This model describes many (but not all) examples of the N-terminal region of bacterial proteins that resemble type IV pilins at their N terminus []. This domain contains a cleavage site G^FxxxE followed by a hydrophobic stretch. The new N-terminal residue produced after cleavage, usually Phe, is methylated. Separate domains of the prepilin peptidase appear to be responsible for cleavage and methylation. Proteins with this N-terminal region include type IV pilins and other components of pilus biogenesis, competence proteins, and type II secretion proteins. Typically several proteins in a single operon have this region.
Probab=41.91 E-value=38 Score=17.97 Aligned_cols=17 Identities=24% Similarity=0.761 Sum_probs=10.6
Q ss_pred CccHH-HHHHHHHHHHHH
Q 026478 215 GFSTV-FVLLIGLLGILV 231 (238)
Q Consensus 215 g~~~~-~v~~v~ll~~ll 231 (238)
||++. .++.++++|++.
T Consensus 2 GFTLiE~~v~l~i~~i~~ 19 (20)
T PF07963_consen 2 GFTLIELLVALAIIAILA 19 (20)
T ss_pred ceeHHHHHHHHHHHHHHh
Confidence 78865 345666666653
No 170
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=41.59 E-value=33 Score=30.09 Aligned_cols=35 Identities=20% Similarity=0.212 Sum_probs=20.9
Q ss_pred ccccchHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q 026478 168 VPKEKSSEAWSMISKLTEEKT---SAMQQNQKLRQELE 202 (238)
Q Consensus 168 ~~~~k~~e~~~~i~~L~eE~~---~~~~q~~~L~~e~~ 202 (238)
++.++..++.+++..|+.+.. .+++||++|++-+.
T Consensus 73 ~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~ 110 (276)
T PRK13922 73 DLREENEELKKELLELESRLQELEQLEAENARLRELLN 110 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445555666666666655544 55677777766444
No 171
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=41.20 E-value=71 Score=23.90 Aligned_cols=32 Identities=19% Similarity=0.156 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 175 EAWSMISKLTEEKTSAMQQNQKLRQELEFVRK 206 (238)
Q Consensus 175 e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~ 206 (238)
-...++.+|+...+.+..+|..|.+++..+|+
T Consensus 77 ~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r~ 108 (109)
T PF03980_consen 77 YKKKEREQLNARLQELEEENEALAEEIQEQRK 108 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33556777777777888888888888887764
No 172
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=41.17 E-value=29 Score=30.42 Aligned_cols=30 Identities=30% Similarity=0.215 Sum_probs=19.0
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 168 VPKEKSSEAWSMISKLTEEKTSAMQQNQKL 197 (238)
Q Consensus 168 ~~~~k~~e~~~~i~~L~eE~~~~~~q~~~L 197 (238)
||++++++..+++..|+.|...++..|-+|
T Consensus 97 ELE~elr~~~~~~~~L~~Ev~~L~~DN~kL 126 (248)
T PF08172_consen 97 ELEEELRKQQQTISSLRREVESLRADNVKL 126 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666666666666666655
No 173
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=41.08 E-value=59 Score=26.71 Aligned_cols=31 Identities=10% Similarity=0.114 Sum_probs=13.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 172 KSSEAWSMISKLTEEKTSAMQQNQKLRQELE 202 (238)
Q Consensus 172 k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~ 202 (238)
++.++...+..|+.|...+.++...+++++.
T Consensus 112 e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~ 142 (161)
T TIGR02894 112 QNESLQKRNEELEKELEKLRQRLSTIEEDYQ 142 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444443
No 174
>PRK14160 heat shock protein GrpE; Provisional
Probab=40.92 E-value=56 Score=28.01 Aligned_cols=40 Identities=18% Similarity=0.113 Sum_probs=23.0
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026478 169 PKEKSSEAWSMISKLTEEKTSAMQQNQKLRQELEFVRKEI 208 (238)
Q Consensus 169 ~~~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~~~ 208 (238)
++.....+.+.+.+|+++...+..+...++.+.+.+|+..
T Consensus 59 l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~ 98 (211)
T PRK14160 59 LKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRT 98 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555566666666666555555666666665543
No 175
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=40.78 E-value=65 Score=23.31 Aligned_cols=32 Identities=16% Similarity=0.202 Sum_probs=14.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 171 EKSSEAWSMISKLTEEKTSAMQQNQKLRQELE 202 (238)
Q Consensus 171 ~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~ 202 (238)
..+..+.+.|...++|...|..||+-|++=..
T Consensus 30 ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~ 61 (80)
T PF10224_consen 30 DSLEALSDRVEEVKEENEKLESENEYLQQYIG 61 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444333
No 176
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=40.69 E-value=49 Score=32.45 Aligned_cols=41 Identities=24% Similarity=0.267 Sum_probs=31.5
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 167 EVPKEKSSEAWSMISKLTEEKTSAMQQNQKLRQELEFVRKE 207 (238)
Q Consensus 167 ~~~~~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~~ 207 (238)
.++++++.-+..-+..|.+|...+..||..|..++..+|++
T Consensus 151 ~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ 191 (546)
T KOG0977|consen 151 SELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQ 191 (546)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 35566667777777888888888888888888888877764
No 177
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=40.54 E-value=48 Score=29.05 Aligned_cols=16 Identities=38% Similarity=0.681 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 026478 190 AMQQNQKLRQELEFVR 205 (238)
Q Consensus 190 ~~~q~~~L~~e~~~l~ 205 (238)
|.-+|..|..+++++|
T Consensus 123 L~~~n~el~~~le~~~ 138 (292)
T KOG4005|consen 123 LLAKNHELDSELELLR 138 (292)
T ss_pred HHhhhHHHHHHHHHHH
Confidence 3333333444444333
No 178
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=40.32 E-value=63 Score=28.42 Aligned_cols=31 Identities=16% Similarity=0.067 Sum_probs=17.2
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 168 VPKEKSSEAWSMISKLTEEKTSAMQQNQKLR 198 (238)
Q Consensus 168 ~~~~k~~e~~~~i~~L~eE~~~~~~q~~~L~ 198 (238)
++..++..++.+|.+|+.+...+..|.++++
T Consensus 58 ~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~ 88 (263)
T PRK10803 58 QLQQQLSDNQSDIDSLRGQIQENQYQLNQVV 88 (263)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4445556666666666655555555555543
No 179
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=40.05 E-value=72 Score=28.92 Aligned_cols=29 Identities=28% Similarity=0.383 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 174 SEAWSMISKLTEEKTSAMQQNQKLRQELE 202 (238)
Q Consensus 174 ~e~~~~i~~L~eE~~~~~~q~~~L~~e~~ 202 (238)
.++.+++..|+.|+..+.+|...|+.|..
T Consensus 60 ~~l~~eL~~LE~e~~~l~~el~~le~e~~ 88 (314)
T PF04111_consen 60 EELLQELEELEKEREELDQELEELEEELE 88 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444333
No 180
>PRK00720 tatA twin arginine translocase protein A; Provisional
Probab=39.71 E-value=31 Score=24.85 Aligned_cols=18 Identities=28% Similarity=0.403 Sum_probs=11.4
Q ss_pred CCccHHHHHHHHHHHHHH
Q 026478 214 GGFSTVFVLLIGLLGILV 231 (238)
Q Consensus 214 ~g~~~~~v~~v~ll~~ll 231 (238)
+|++++++++++++.+||
T Consensus 2 gg~g~~ellIIlvIvlll 19 (78)
T PRK00720 2 GSFSIWHWLIVLAVVLLL 19 (78)
T ss_pred CCCcHHHHHHHHHHHHHH
Confidence 467777766666665554
No 181
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=39.63 E-value=37 Score=30.30 Aligned_cols=10 Identities=40% Similarity=0.421 Sum_probs=4.7
Q ss_pred HHHHHHHHHH
Q 026478 197 LRQELEFVRK 206 (238)
Q Consensus 197 L~~e~~~l~~ 206 (238)
+++|.++||+
T Consensus 96 l~~EN~rLr~ 105 (283)
T TIGR00219 96 LKQENVRLRE 105 (283)
T ss_pred HHHHHHHHHH
Confidence 4444444544
No 182
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=39.60 E-value=68 Score=26.34 Aligned_cols=32 Identities=25% Similarity=0.287 Sum_probs=12.9
Q ss_pred cchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 026478 171 EKSSEAWSMISKLT-EEKTSAMQQNQKLRQELE 202 (238)
Q Consensus 171 ~k~~e~~~~i~~L~-eE~~~~~~q~~~L~~e~~ 202 (238)
+.++++..++..++ .+...++.++++|+.|++
T Consensus 58 a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie 90 (177)
T PF07798_consen 58 AAIAELRSELQNSRKSEFAELRSENEKLQREIE 90 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444443332 233334444444444433
No 183
>PF14645 Chibby: Chibby family
Probab=39.57 E-value=60 Score=25.11 Aligned_cols=24 Identities=21% Similarity=0.321 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 179 MISKLTEEKTSAMQQNQKLRQELE 202 (238)
Q Consensus 179 ~i~~L~eE~~~~~~q~~~L~~e~~ 202 (238)
...+|+++.+.+.+||+.|+=+.+
T Consensus 72 ~~~~l~~~n~~L~EENN~Lklk~e 95 (116)
T PF14645_consen 72 ENQRLRKENQQLEEENNLLKLKIE 95 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666677777777765544
No 184
>PRK14163 heat shock protein GrpE; Provisional
Probab=39.28 E-value=2.1e+02 Score=24.55 Aligned_cols=35 Identities=11% Similarity=0.175 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026478 174 SEAWSMISKLTEEKTSAMQQNQKLRQELEFVRKEI 208 (238)
Q Consensus 174 ~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~~~ 208 (238)
.++.+++..|++++..+.....+++.|.+.+|+..
T Consensus 43 ~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~rkR~ 77 (214)
T PRK14163 43 AGLTAQLDQVRTALGERTADLQRLQAEYQNYRRRV 77 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666666666667777666554
No 185
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=38.98 E-value=1.1e+02 Score=24.36 Aligned_cols=24 Identities=38% Similarity=0.470 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 183 LTEEKTSAMQQNQKLRQELEFVRK 206 (238)
Q Consensus 183 L~eE~~~~~~q~~~L~~e~~~l~~ 206 (238)
|+.++..+.+|.++|++|...+++
T Consensus 79 LE~~k~~L~qqv~~L~~e~s~~~~ 102 (135)
T KOG4196|consen 79 LEKEKAELQQQVEKLKEENSRLRR 102 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555554443
No 186
>PF10031 DUF2273: Small integral membrane protein (DUF2273); InterPro: IPR018730 Members of this family of hypothetical bacterial proteins have no known function.
Probab=38.88 E-value=37 Score=22.32 Aligned_cols=19 Identities=32% Similarity=0.724 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 026478 218 TVFVLLIGLLGILVGYLVK 236 (238)
Q Consensus 218 ~~~v~~v~ll~~llG~~~~ 236 (238)
..++++++.+|..+|+++-
T Consensus 32 tl~i~~~~~iG~~iG~~~d 50 (51)
T PF10031_consen 32 TLFILLFAAIGYYIGKYLD 50 (51)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 4456677777777777653
No 187
>PF11859 DUF3379: Protein of unknown function (DUF3379); InterPro: IPR021806 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 234 to 251 amino acids in length.
Probab=38.87 E-value=1.4e+02 Score=25.97 Aligned_cols=23 Identities=17% Similarity=0.245 Sum_probs=16.2
Q ss_pred CCccHHHHHHHHHHHHHHHHHhc
Q 026478 214 GGFSTVFVLLIGLLGILVGYLVK 236 (238)
Q Consensus 214 ~g~~~~~v~~v~ll~~llG~~~~ 236 (238)
..|.-++++++|=++|++|.+++
T Consensus 75 ~~f~r~~lAlAASVAFv~Gl~~~ 97 (232)
T PF11859_consen 75 PRFARWHLALAASVAFVVGLSFG 97 (232)
T ss_pred cchHHHHHHHHHHHHHHHHHHHH
Confidence 35666677777778888887764
No 188
>PF01105 EMP24_GP25L: emp24/gp25L/p24 family/GOLD; InterPro: IPR009038 The GOLD (for Golgi dynamics) domain is a protein module found in several eukaryotic Golgi and lipid-traffic proteins. It is typically between 90 and 150 amino acids long. Most of the size difference observed in the GOLD-domain superfamily is traceable to a single large low-complexity insert that is seen in some versions of the domain. With the exception of the p24 proteins, which have a simple architecture with the GOLD domain as their only globular domain, all other GOLD-domain proteins contain additional conserved globular domains. In these proteins, the GOLD domain co-occurs with lipid-, sterol- or fatty acid-binding domains such as PH, CRAL-TRIO, FYVE oxysterol binding- and acyl CoA-binding domains, suggesting that these proteins may interact with membranes. The GOLD domain can also be found associated with a RUN domain, which may have a role in the interaction of various proteins with cytoskeletal filaments. The GOLD domain is predicted to mediate diverse protein-protein interactions []. A secondary structure prediction for the GOLD domain reveals that it is likely to adopt a compact all-beta-fold structure with six to seven strands. Most of the sequence conservation is centred on the hydrophobic cores that support these predicted strands. The predicted secondary-structure elements and the size of the conserved core of the domain suggests that it may form a beta- sandwich fold with the strands arranged in two beta sheets stacked on each other []. Some proteins known to contain a GOLD domain are listed below: Eukaryotic proteins of the p24 family. Animal Sec14-like proteins. They are involved in secretion. Human Golgi resident protein GCP60. It interacts with the Golgi integral membrane protein Giantin. Yeast oxysterol-binding protein homologue 3 (OSH3). ; GO: 0006810 transport, 0016021 integral to membrane; PDB: 1P23_A 1M23_A.
Probab=38.82 E-value=8.2 Score=30.77 Aligned_cols=22 Identities=18% Similarity=0.354 Sum_probs=1.0
Q ss_pred CccHHHHHHHHHHHHHHHHHhc
Q 026478 215 GFSTVFVLLIGLLGILVGYLVK 236 (238)
Q Consensus 215 g~~~~~v~~v~ll~~llG~~~~ 236 (238)
-|+++-++++++++++=-|+++
T Consensus 158 ~~si~~~~vli~~~~~Qv~~lk 179 (183)
T PF01105_consen 158 WWSIIQIVVLILVSVWQVYYLK 179 (183)
T ss_dssp --------------------HH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 4566656666666665555554
No 189
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=38.70 E-value=50 Score=31.80 Aligned_cols=38 Identities=11% Similarity=0.156 Sum_probs=18.8
Q ss_pred cchHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHh
Q 026478 171 EKSSEAWSMISKLTEEKT-------SAMQQNQKLRQELEFVRKEI 208 (238)
Q Consensus 171 ~k~~e~~~~i~~L~eE~~-------~~~~q~~~L~~e~~~l~~~~ 208 (238)
.+.+++++++.+|+.|.+ .+.+..+.|+.|...|+.+.
T Consensus 76 ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 76 VTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 344455555555543333 34444445556666665553
No 190
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=38.33 E-value=1.3e+02 Score=31.34 Aligned_cols=23 Identities=35% Similarity=0.784 Sum_probs=17.5
Q ss_pred CCcccccCCCeeEEEEeEEEEecCCC
Q 026478 105 PDMFTKEDGKVVEEFKLRVVYIPANP 130 (238)
Q Consensus 105 ~~~f~~~~~~~i~~~kL~v~~~p~~~ 130 (238)
+++|.. +.+.+++=+|+|+|++|
T Consensus 262 Pnf~~~---sdl~~~~~pvv~i~~Ep 284 (980)
T KOG0980|consen 262 PNFLRQ---SDLESYITPVVYIPSEP 284 (980)
T ss_pred cccccc---cchhhcCCCceecCCCC
Confidence 566664 35788999999998875
No 191
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=38.20 E-value=79 Score=24.15 Aligned_cols=30 Identities=10% Similarity=0.107 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026478 179 MISKLTEEKTSAMQQNQKLRQELEFVRKEI 208 (238)
Q Consensus 179 ~i~~L~eE~~~~~~q~~~L~~e~~~l~~~~ 208 (238)
.+..+++|+..|.+++.+|+.|.+.|++..
T Consensus 72 ~~~~~~~ei~~L~~el~~L~~E~diLKKa~ 101 (121)
T PRK09413 72 ELAAAMKQIKELQRLLGKKTMENELLKEAV 101 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355688888899999999999999888764
No 192
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=38.16 E-value=71 Score=21.19 Aligned_cols=24 Identities=50% Similarity=0.560 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 175 EAWSMISKLTEEKTSAMQQNQKLRQELEFVR 205 (238)
Q Consensus 175 e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~ 205 (238)
.+...|.+|..| |..|+.++..++
T Consensus 26 ~a~~rl~~l~~E-------N~~Lr~eL~~~r 49 (52)
T PF12808_consen 26 AARKRLSKLEGE-------NRLLRAELERLR 49 (52)
T ss_pred hHHHHHHHHHHH-------HHHHHHHHHHHh
Confidence 445555555554 667777766654
No 193
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=38.12 E-value=70 Score=28.97 Aligned_cols=13 Identities=23% Similarity=0.250 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHH
Q 026478 222 LLIGLLGILVGYL 234 (238)
Q Consensus 222 ~~v~ll~~llG~~ 234 (238)
++.+-+++||..+
T Consensus 173 AA~Gq~~LLL~~l 185 (314)
T PF04111_consen 173 AAWGQTALLLQTL 185 (314)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444443
No 194
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=37.48 E-value=73 Score=26.37 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 183 LTEEKTSAMQQNQKLRQELEFVRKE 207 (238)
Q Consensus 183 L~eE~~~~~~q~~~L~~e~~~l~~~ 207 (238)
+++|...+.+|.++.+.|.+.|++|
T Consensus 159 ~~~ei~~lk~el~~~~~~~~~LkkQ 183 (192)
T PF05529_consen 159 LSEEIEKLKKELEKKEKEIEALKKQ 183 (192)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444555555544
No 195
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=36.86 E-value=56 Score=28.45 Aligned_cols=33 Identities=24% Similarity=0.273 Sum_probs=15.6
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 168 VPKEKSSEAWSMISKLTEEKTSAMQQNQKLRQE 200 (238)
Q Consensus 168 ~~~~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e 200 (238)
++++.+.+....+..+.+|+..++.++..|+.|
T Consensus 132 d~ke~~ee~kekl~E~~~EkeeL~~eleele~e 164 (290)
T COG4026 132 DLKEDYEELKEKLEELQKEKEELLKELEELEAE 164 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444555555555554433
No 196
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=36.68 E-value=90 Score=26.85 Aligned_cols=37 Identities=19% Similarity=0.265 Sum_probs=26.0
Q ss_pred cchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 026478 171 EKSSEAWSMISKLTE-EKTSAMQQNQKLRQELEFVRKE 207 (238)
Q Consensus 171 ~k~~e~~~~i~~L~e-E~~~~~~q~~~L~~e~~~l~~~ 207 (238)
..++....++..+++ |-..++.||++|+.|++.+|..
T Consensus 101 ~~f~kiRsel~S~e~sEF~~lr~e~EklkndlEk~ks~ 138 (220)
T KOG3156|consen 101 VDFAKIRSELVSIERSEFANLRAENEKLKNDLEKLKSS 138 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666665533 5667888999999999977654
No 197
>PRK04561 tatA twin arginine translocase protein A; Provisional
Probab=36.55 E-value=38 Score=24.20 Aligned_cols=18 Identities=33% Similarity=0.488 Sum_probs=11.1
Q ss_pred CCccHHHHHHHHHHHHHH
Q 026478 214 GGFSTVFVLLIGLLGILV 231 (238)
Q Consensus 214 ~g~~~~~v~~v~ll~~ll 231 (238)
+||+++..++++++.+||
T Consensus 2 gg~s~~ellIIlvIvlLl 19 (75)
T PRK04561 2 GSFSIWHWLVVLVIVLLV 19 (75)
T ss_pred CCCcHHHHHHHHHHHHHH
Confidence 477877765555555543
No 198
>TIGR02532 IV_pilin_GFxxxE prepilin-type N-terminal cleavage/methylation domain. This model describes many but not all examples of the N-terminal region of bacterial proteins that resemble type IV pilins at their N-terminus, with a cleavage site G^FxxxE followed by a hydrophobic stretch. The new N-terminal residue, usually Phe, is methylated. Separate domains of the prepilin peptidase appear responsible for cleavage and methylation. Proteins with this N-terminal region include type IV pilins and other components of pilus biogenesis, competence proteins, and type II secretion proteins. Typically several proteins in a single operon have this N-terminal domain. The N-terminal cleavage and methylation site is described by PROSITE motif PS00409 as [KRHEQSTAG]-G-[FYLIVM]-[ST]-[LT]-[LIVP]-E-[LIVMFWSTAG](14).
Probab=36.09 E-value=72 Score=17.74 Aligned_cols=21 Identities=29% Similarity=0.741 Sum_probs=12.9
Q ss_pred CCccHH-HHHHHHHHHHHHHHH
Q 026478 214 GGFSTV-FVLLIGLLGILVGYL 234 (238)
Q Consensus 214 ~g~~~~-~v~~v~ll~~llG~~ 234 (238)
.||++. ..+.++++++++...
T Consensus 2 ~GfTLiEllial~i~~i~~~~~ 23 (26)
T TIGR02532 2 RGFTLIELLVVLAILGILAAIA 23 (26)
T ss_pred CceeHHHHHHHHHHHHHHHHHh
Confidence 588875 345666666666543
No 199
>PRK14748 kdpF potassium-transporting ATPase subunit F; Provisional
Probab=35.95 E-value=54 Score=18.97 Aligned_cols=17 Identities=35% Similarity=0.493 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHhc
Q 026478 220 FVLLIGLLGILVGYLVK 236 (238)
Q Consensus 220 ~v~~v~ll~~llG~~~~ 236 (238)
.+..+.++-+++||+..
T Consensus 5 vi~G~ilv~lLlgYLvy 21 (29)
T PRK14748 5 VITGVLLVFLLLGYLVY 21 (29)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34555666677888753
No 200
>TIGR01165 cbiN cobalt transport protein. This model describes the cobalt transporter in bacteria and its equivalents in archaea. It principally functions in the ion uptake mechanism. It is a multisubunit transporter with two integral membrane proteins and two closely associated cytoplasmic subunits. This transporter belongs to the ABC transporter superfamily (ATP stands for ATP Binding Cassette). This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=35.77 E-value=9.9 Score=28.21 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=18.2
Q ss_pred CccHHHHHHHHHHHHHHHHHhcC
Q 026478 215 GFSTVFVLLIGLLGILVGYLVKT 237 (238)
Q Consensus 215 g~~~~~v~~v~ll~~llG~~~~~ 237 (238)
.=|++|++=.+|=+.+|||+++.
T Consensus 66 iESlLFaLQAaiGagiIgY~~G~ 88 (91)
T TIGR01165 66 IESLLFALQAALGALVIGYVIGY 88 (91)
T ss_pred HHHHHHHHHHHhhheeeeEEEEE
Confidence 35678888888888899998874
No 201
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=35.65 E-value=81 Score=23.48 Aligned_cols=36 Identities=14% Similarity=0.204 Sum_probs=19.9
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 169 PKEKSSEAWSMISKLTEEKTSAMQQNQKLRQELEFV 204 (238)
Q Consensus 169 ~~~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l 204 (238)
++.+...+...+.+|+++...+..+...++.++..+
T Consensus 68 Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 68 LKERLETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555556666666666555555555555554443
No 202
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=35.63 E-value=44 Score=27.66 Aligned_cols=31 Identities=19% Similarity=0.179 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 174 SEAWSMISKLTEEKTSAMQQNQKLRQELEFV 204 (238)
Q Consensus 174 ~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l 204 (238)
++...++.+|++|......+.+.|+++.+.+
T Consensus 157 ~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l 187 (192)
T PF05529_consen 157 KKLSEEIEKLKKELEKKEKEIEALKKQSEGL 187 (192)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555554443
No 203
>PRK14139 heat shock protein GrpE; Provisional
Probab=35.43 E-value=1.8e+02 Score=24.38 Aligned_cols=34 Identities=12% Similarity=0.116 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 174 SEAWSMISKLTEEKTSAMQQNQKLRQELEFVRKE 207 (238)
Q Consensus 174 ~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~~ 207 (238)
..+.+++..|++|...+..+...++.|.+.+|+.
T Consensus 35 ~~l~~~l~~le~e~~elkd~~lR~~AefeN~rKR 68 (185)
T PRK14139 35 PALEAELAEAEAKAAELQDSFLRAKAETENVRRR 68 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556555555555555555665555544
No 204
>PF08078 PsaX: PsaX family; InterPro: IPR012986 This family consists of the PsaX family of photosystem I (PSI) protein subunits. PSI is a large multi-subunit pigment protein complex embedded in the thylakoid membranes of green plants and cyanobacteria. PsaX is one of the 12 protein subunits found in PSI and these subunits are arranged as monomers or trimers within the membrane as shown by the structure of the trimeric complex from Synechococcus elongatus [].; PDB: 3PCQ_X 1JB0_X.
Probab=35.41 E-value=57 Score=19.81 Aligned_cols=18 Identities=17% Similarity=0.307 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 026478 219 VFVLLIGLLGILVGYLVK 236 (238)
Q Consensus 219 ~~v~~v~ll~~llG~~~~ 236 (238)
|.+++++|=-++.||+|+
T Consensus 18 Wa~llLaINflVAayYFh 35 (37)
T PF08078_consen 18 WALLLLAINFLVAAYYFH 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhe
Confidence 567788888888899886
No 205
>TIGR01803 CM-like chorismate mutase related enzymes. This subfamily includes two enzymes which are variants on the mechanism of chorismate mutase and are likely to have evolved from an ancestral chorismate mutase enzyme. 4-amino-4-deoxy-chorismate mutase produces amino-deoxy-prephenate which is subsequently converted to para-dimethylamino-phenylalanine, a component of the natural product pristinamycin. Isochorismate-pyruvate lyase presumably catalyzes the same type of 2+2+2 cyclo-rearrangement as chorismate mutase, but acting on isochorismate, this results in two broken bonds instead of one broken and one made. The product of this reaction is salicylate (2-hydroxy-benzoate) which is also incorporated into various natural products.
Probab=35.24 E-value=1.6e+02 Score=20.81 Aligned_cols=33 Identities=3% Similarity=0.039 Sum_probs=24.5
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 168 VPKEKSSEAWSMISKLTEEKTSAMQQNQKLRQE 200 (238)
Q Consensus 168 ~~~~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e 200 (238)
++..+.++.+.+|..|=.+|..+.++.-.++.+
T Consensus 3 ~lR~~ID~ID~~lv~Ll~~R~~~~~~ia~~K~~ 35 (82)
T TIGR01803 3 DIREAIDRIDLALVQALGRRMDYVKRASEFKRS 35 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 355677788888888888888877777777543
No 206
>PF04325 DUF465: Protein of unknown function (DUF465); InterPro: IPR007420 Family members are found in small bacterial proteins, and also in the heavy chains of eukaryotic myosin and kinesin, C-terminal of the motor domain. Members of this family may form coiled coil structures.; PDB: 1ZHC_A.
Probab=35.14 E-value=1.2e+02 Score=19.34 Aligned_cols=34 Identities=21% Similarity=0.246 Sum_probs=18.5
Q ss_pred cchHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Q 026478 171 EKSSEAWSMISKLTE-------EKTSAMQQNQKLRQELEFV 204 (238)
Q Consensus 171 ~k~~e~~~~i~~L~e-------E~~~~~~q~~~L~~e~~~l 204 (238)
++..+++.+|..+.. +...+.+++-.|++++..+
T Consensus 6 ~~h~~Ld~~I~~~e~~~~~~d~~l~~LKk~kL~LKDei~~l 46 (49)
T PF04325_consen 6 EEHHELDKEIHRLEKRPEPDDEELERLKKEKLRLKDEIYRL 46 (49)
T ss_dssp HHHHHHHHHHHHHHTT--S-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666665542 3344555555566665544
No 207
>PRK14127 cell division protein GpsB; Provisional
Probab=34.91 E-value=1.4e+02 Score=22.87 Aligned_cols=37 Identities=14% Similarity=0.093 Sum_probs=25.4
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 169 PKEKSSEAWSMISKLTEEKTSAMQQNQKLRQELEFVR 205 (238)
Q Consensus 169 ~~~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~ 205 (238)
+-..+..+..++..|++|...+.++...++.+....+
T Consensus 35 V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~~ 71 (109)
T PRK14127 35 VIKDYEAFQKEIEELQQENARLKAQVDELTKQVSVGA 71 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 3345566777777777777777777777777666443
No 208
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=34.80 E-value=36 Score=26.96 Aligned_cols=30 Identities=20% Similarity=0.134 Sum_probs=14.6
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 168 VPKEKSSEAWSMISKLTEEKTSAMQQNQKL 197 (238)
Q Consensus 168 ~~~~k~~e~~~~i~~L~eE~~~~~~q~~~L 197 (238)
.|+.++..-+++|..|++++..+...|..|
T Consensus 98 kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~L 127 (131)
T PF04859_consen 98 KLEAELRAKDSEIDRLREKLDELNRANKSL 127 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444555555555555554444444
No 209
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.79 E-value=2.2e+02 Score=22.13 Aligned_cols=16 Identities=25% Similarity=0.494 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHhc
Q 026478 221 VLLIGLLGILVGYLVK 236 (238)
Q Consensus 221 v~~v~ll~~llG~~~~ 236 (238)
++++.++.++|-|++.
T Consensus 100 ~v~~i~l~iiii~~~~ 115 (116)
T KOG0860|consen 100 LVIIILLVVIIIYIFL 115 (116)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 3344444555555543
No 210
>PF02404 SCF: Stem cell factor; InterPro: IPR003452 Stem cell factor (SCF) is a homodimer involved in hematopoiesis. SCF binds to and activates the SCF receptor (SCFR), a receptor tyrosine kinase. SCF stimulates the proliferation of mast cells and is able to augment the proliferation of both myeloid and lymphoid hematopoietic progenitors in bone marrow culture. It also mediates cell-cell adhesion and acts synergistically with other cytokines. SCF is a type I membrane protein, but is also found in a secretable, soluble form. The crystal structure of human SCF has been resolved and a potential receptor-binding site identified [].; GO: 0005173 stem cell factor receptor binding, 0007155 cell adhesion, 0016020 membrane; PDB: 1EXZ_A 1SCF_D 2E9W_C 2O26_A 2O27_A.
Probab=34.63 E-value=13 Score=32.83 Aligned_cols=19 Identities=16% Similarity=0.429 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 026478 218 TVFVLLIGLLGILVGYLVK 236 (238)
Q Consensus 218 ~~~v~~v~ll~~llG~~~~ 236 (238)
...+++.+|++++||++||
T Consensus 215 ~~~iAL~sl~SLVIGFvlG 233 (273)
T PF02404_consen 215 WPAIALPSLFSLVIGFVLG 233 (273)
T ss_dssp -------------------
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3345678888888888876
No 211
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=34.61 E-value=87 Score=24.02 Aligned_cols=28 Identities=14% Similarity=0.196 Sum_probs=14.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 173 SSEAWSMISKLTEEKTSAMQQNQKLRQE 200 (238)
Q Consensus 173 ~~e~~~~i~~L~eE~~~~~~q~~~L~~e 200 (238)
.+...++..+|..++..+.+|++.|+++
T Consensus 59 i~~~~~e~~~L~~~~~~l~~ei~~L~dg 86 (117)
T COG2919 59 IAAQQAELEKLSARNTALEAEIKDLKDG 86 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3344555555555555555555555544
No 212
>PRK15308 putative fimbrial protein TcfA; Provisional
Probab=34.27 E-value=3.1e+02 Score=23.80 Aligned_cols=84 Identities=13% Similarity=0.169 Sum_probs=59.5
Q ss_pred ceEEeCCeeeecccCCCceeEEEEEEcCCCCeEEEEEee---cCC---------------CcEEEeCCceeeCCCCEEEE
Q 026478 6 LVNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKT---TNP---------------KKYCVRPNTGIILPRTSCAV 67 (238)
Q Consensus 6 lL~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKT---T~p---------------~~Y~VrP~~G~I~P~~s~~V 67 (238)
-|.|.|-.+.+... .+..+.++|+|.++.+..++|.. ++| ..-.+.|..-.|.||++..|
T Consensus 17 ~l~V~Pi~~~i~a~--~~~~~~v~V~N~g~~~~~vqV~v~r~~~PG~~~e~~~~~~~~~~~eLiaSP~~l~L~pg~~q~I 94 (234)
T PRK15308 17 NMLVYPMAAEIGAG--REEATSLFVYSKSDHTQYVRTRIKRIEHPATPQEKEVPAGNDIETGLVVSPEKFALPAGTTRTV 94 (234)
T ss_pred eEEEEEeEEEecCC--CcceEEEEEEeCCCCcEEEEEEEEEEcCCCCCCCcccccccCCCCcEEEcCceeEECCCCeEEE
Confidence 46788877776432 24568999999999988877642 232 23678899999999999999
Q ss_pred EEEecccccCCCCCCCCCeEEEEEEeCCCC
Q 026478 68 TVTMQAQKEAPPDFQCKDKFLLLSVVAPDG 97 (238)
Q Consensus 68 ~V~lq~~~~~p~~~~~kdKFlVqs~~v~~~ 97 (238)
.+..... ++ ...-|.|...++++.
T Consensus 95 Rli~lg~----~~--kE~~YRl~~~pvp~~ 118 (234)
T PRK15308 95 RVISLQA----PE--REEAWRVYFEPVAEL 118 (234)
T ss_pred EEEEcCC----CC--cEEEEEEEEEecCCc
Confidence 9886642 22 345577777777653
No 213
>COG1930 CbiN ABC-type cobalt transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=34.25 E-value=9.7 Score=28.30 Aligned_cols=21 Identities=24% Similarity=0.387 Sum_probs=15.0
Q ss_pred ccHHHHHHHHHHHHHHHHHhc
Q 026478 216 FSTVFVLLIGLLGILVGYLVK 236 (238)
Q Consensus 216 ~~~~~v~~v~ll~~llG~~~~ 236 (238)
=|++|.+=.||=+.+||||++
T Consensus 65 ESLLFslQaaiGa~IIgY~lG 85 (97)
T COG1930 65 ESLLFSLQAAIGAGIIGYFLG 85 (97)
T ss_pred HHHHHHHHHHhcceeeeeeee
Confidence 346677777777777888775
No 214
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=34.21 E-value=75 Score=22.37 Aligned_cols=31 Identities=16% Similarity=0.080 Sum_probs=23.8
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 169 PKEKSSEAWSMISKLTEEKTSAMQQNQKLRQ 199 (238)
Q Consensus 169 ~~~k~~e~~~~i~~L~eE~~~~~~q~~~L~~ 199 (238)
+..++..+.+++.++++|.+.|..|...|..
T Consensus 29 ~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~ 59 (85)
T TIGR02209 29 LNNELQKLQLEIDKLQKEWRDLQLEVAELSR 59 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3456678888888888888888888887753
No 215
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=34.13 E-value=1.3e+02 Score=23.46 Aligned_cols=26 Identities=12% Similarity=0.134 Sum_probs=10.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 171 EKSSEAWSMISKLTEEKTSAMQQNQK 196 (238)
Q Consensus 171 ~k~~e~~~~i~~L~eE~~~~~~q~~~ 196 (238)
.++.-+..++.+|..+++.+.+|.-+
T Consensus 30 ~E~~~l~~el~~l~~~r~~l~~Eiv~ 55 (120)
T PF12325_consen 30 GELASLQEELARLEAERDELREEIVK 55 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444333333
No 216
>PF15168 TRIQK: Triple QxxK/R motif-containing protein family
Probab=34.01 E-value=1.8e+02 Score=20.90 Aligned_cols=10 Identities=30% Similarity=0.544 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q 026478 223 LIGLLGILVG 232 (238)
Q Consensus 223 ~v~ll~~llG 232 (238)
+++|+.+|+|
T Consensus 55 l~ail~lL~a 64 (79)
T PF15168_consen 55 LAAILVLLLA 64 (79)
T ss_pred HHHHHHHHHH
Confidence 3344444443
No 217
>KOG3488 consensus Dolichol phosphate-mannose regulatory protein (DPM2) [Posttranslational modification, protein turnover, chaperones]
Probab=33.93 E-value=40 Score=23.84 Aligned_cols=23 Identities=13% Similarity=0.379 Sum_probs=17.0
Q ss_pred ccHH-HHHHHHHHHHHHHHHhcCC
Q 026478 216 FSTV-FVLLIGLLGILVGYLVKTT 238 (238)
Q Consensus 216 ~~~~-~v~~v~ll~~llG~~~~~~ 238 (238)
.|+. ..+++|++|.++++++-|+
T Consensus 52 iPvaagl~ll~lig~Fis~vMlKs 75 (81)
T KOG3488|consen 52 IPVAAGLFLLCLIGTFISLVMLKS 75 (81)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhc
Confidence 4443 3578899999999998653
No 218
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=33.79 E-value=55 Score=31.32 Aligned_cols=15 Identities=13% Similarity=0.324 Sum_probs=8.1
Q ss_pred eeEEEEeEEEEecCC
Q 026478 115 VVEEFKLRVVYIPAN 129 (238)
Q Consensus 115 ~i~~~kL~v~~~p~~ 129 (238)
...+.-+++.+.|.+
T Consensus 173 ~~~~~~~~~s~~~~~ 187 (472)
T KOG0709|consen 173 SCHDIAIDESLIPDE 187 (472)
T ss_pred ccccccccccccccc
Confidence 345555566666544
No 219
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=33.36 E-value=98 Score=25.04 Aligned_cols=32 Identities=25% Similarity=0.222 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 173 SSEAWSMISKLTEEKTSAMQQNQKLRQELEFV 204 (238)
Q Consensus 173 ~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l 204 (238)
+.+++.+|..|++|...+..++..|+.|+..|
T Consensus 74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L 105 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKKEVKSLEAELASL 105 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555444433
No 220
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=33.34 E-value=1.1e+02 Score=23.84 Aligned_cols=38 Identities=21% Similarity=0.243 Sum_probs=23.6
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 169 PKEKSSEAWSMISKLTEEKTSAMQQNQKLRQELEFVRK 206 (238)
Q Consensus 169 ~~~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~ 206 (238)
++.+...+...+.+|+++...+.++.+.+++.+..+..
T Consensus 99 l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~ 136 (140)
T PRK03947 99 LDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQ 136 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666666666666666665543
No 221
>PF15058 Speriolin_N: Speriolin N terminus
Probab=33.30 E-value=61 Score=27.44 Aligned_cols=30 Identities=17% Similarity=0.175 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 173 SSEAWSMISKLTEEKTSAMQQNQKLRQELE 202 (238)
Q Consensus 173 ~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~ 202 (238)
+.-+..+|.+|-.|..+|+++.+-++++..
T Consensus 7 yeGlrhqierLv~ENeeLKKlVrLirEN~e 36 (200)
T PF15058_consen 7 YEGLRHQIERLVRENEELKKLVRLIRENHE 36 (200)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 445566777777776666666666654433
No 222
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=33.29 E-value=43 Score=25.61 Aligned_cols=28 Identities=29% Similarity=0.462 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 175 EAWSMISKLTEEKTSAMQQNQKLRQELE 202 (238)
Q Consensus 175 e~~~~i~~L~eE~~~~~~q~~~L~~e~~ 202 (238)
+.+..+..|.++...+.+++..|++++.
T Consensus 22 eVD~fl~~l~~~~~~l~~e~~~L~~~~~ 49 (131)
T PF05103_consen 22 EVDDFLDELAEELERLQRENAELKEEIE 49 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444544444444
No 223
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=33.06 E-value=82 Score=24.18 Aligned_cols=36 Identities=28% Similarity=0.250 Sum_probs=30.4
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 168 VPKEKSSEAWSMISKLTEEKTSAMQQNQKLRQELEF 203 (238)
Q Consensus 168 ~~~~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~ 203 (238)
.+-.++..+.+.+..|-||...|+=||.+|++.+..
T Consensus 19 ~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 19 VLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 344567788888999999999999999999998875
No 224
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=33.01 E-value=1.2e+02 Score=25.04 Aligned_cols=20 Identities=30% Similarity=0.250 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 026478 174 SEAWSMISKLTEEKTSAMQQ 193 (238)
Q Consensus 174 ~e~~~~i~~L~eE~~~~~~q 193 (238)
.++..++.++.+|+..|++-
T Consensus 32 eeLr~EL~KvEeEI~TLrqv 51 (162)
T PF04201_consen 32 EELRSELAKVEEEIQTLRQV 51 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45566666666665544433
No 225
>PRK14161 heat shock protein GrpE; Provisional
Probab=32.91 E-value=94 Score=25.87 Aligned_cols=31 Identities=23% Similarity=0.193 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 176 AWSMISKLTEEKTSAMQQNQKLRQELEFVRK 206 (238)
Q Consensus 176 ~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~ 206 (238)
+.+++..|++|...+..+...++.|.+.+|+
T Consensus 24 ~~~ei~~l~~e~~elkd~~lR~~AefeN~rk 54 (178)
T PRK14161 24 ANPEITALKAEIEELKDKLIRTTAEIDNTRK 54 (178)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444
No 226
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=32.80 E-value=1.6e+02 Score=21.06 Aligned_cols=36 Identities=17% Similarity=0.218 Sum_probs=24.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 171 EKSSEAWSMISKLTEEKTSAMQQNQKLRQELEFVRK 206 (238)
Q Consensus 171 ~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~ 206 (238)
+++.++...+..|+..+....+-|++|+.+...++.
T Consensus 19 eEI~rLn~lv~sLR~KLiKYt~LnkkLq~~~~~~~~ 54 (76)
T PF11544_consen 19 EEIDRLNILVGSLRGKLIKYTELNKKLQDQLLNLQR 54 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445566666666777777777778888877776554
No 227
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=32.65 E-value=48 Score=28.55 Aligned_cols=40 Identities=15% Similarity=0.231 Sum_probs=23.6
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026478 169 PKEKSSEAWSMISKLTEEKTSAMQQNQKLRQELEFVRKEI 208 (238)
Q Consensus 169 ~~~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~~~ 208 (238)
++++.+...+...+|++|.++...+.++++.+...|+++.
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~ 188 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQS 188 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666666666666666666665553
No 228
>PRK02958 tatA twin arginine translocase protein A; Provisional
Probab=32.52 E-value=48 Score=23.59 Aligned_cols=18 Identities=33% Similarity=0.512 Sum_probs=10.9
Q ss_pred CCccHHHHHHHHHHHHHH
Q 026478 214 GGFSTVFVLLIGLLGILV 231 (238)
Q Consensus 214 ~g~~~~~v~~v~ll~~ll 231 (238)
+|++++.+++++++.+||
T Consensus 2 g~~g~~elliIl~Ivlll 19 (73)
T PRK02958 2 GSFSIWHWLIVLVIVVLV 19 (73)
T ss_pred CCccHHHHHHHHHHHHHH
Confidence 367777766665555543
No 229
>TIGR02327 int_mem_ywzB conserved hypothetical integral membrane protein. Members of this protein family are small, typically about 80 residues in length, and are highly hydrophobic. The gene is found so far only in a subset of the Firmicutes in association with genes of the ATP synthase F1 complex or NADH-quinone oxidoreductase. This family includes ywzB from Bacillus subtilis; Pfam model pfam06612 describes the same family as Protein of unknown function DUF1146.
Probab=31.98 E-value=48 Score=23.20 Aligned_cols=21 Identities=29% Similarity=0.436 Sum_probs=14.2
Q ss_pred ccHHHHHHHHHHHHHHHHHhc
Q 026478 216 FSTVFVLLIGLLGILVGYLVK 236 (238)
Q Consensus 216 ~~~~~v~~v~ll~~llG~~~~ 236 (238)
-+...=+++.++|+.+||+..
T Consensus 31 ~~~q~~ll~vllaIalGylvs 51 (68)
T TIGR02327 31 NVGQLRVLVVLIAIALGYTVS 51 (68)
T ss_pred CchHHHHHHHHHHHHHHHHHH
Confidence 333444677788888888764
No 230
>PF14209 DUF4321: Domain of unknown function (DUF4321)
Probab=31.85 E-value=38 Score=22.04 Aligned_cols=15 Identities=27% Similarity=0.476 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHhc
Q 026478 222 LLIGLLGILVGYLVK 236 (238)
Q Consensus 222 ~~v~ll~~llG~~~~ 236 (238)
=++.++|+++||+++
T Consensus 35 nl~sIlGiila~~lY 49 (49)
T PF14209_consen 35 NLASILGIILAIWLY 49 (49)
T ss_pred cHHHHHHHHHHhhhC
Confidence 467888999998864
No 231
>PRK14140 heat shock protein GrpE; Provisional
Probab=31.78 E-value=1.2e+02 Score=25.58 Aligned_cols=34 Identities=15% Similarity=0.252 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 174 SEAWSMISKLTEEKTSAMQQNQKLRQELEFVRKE 207 (238)
Q Consensus 174 ~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~~ 207 (238)
.++.+.+..|+++...+..+...++.+.+.+|+.
T Consensus 40 ~~l~~~i~~l~~ei~elkd~~lR~~Ae~eN~rkR 73 (191)
T PRK14140 40 DEEQAKIAELEAKLDELEERYLRLQADFENYKRR 73 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556555555555555555555555544
No 232
>COG4317 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.74 E-value=42 Score=24.49 Aligned_cols=15 Identities=60% Similarity=1.043 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHh
Q 026478 221 VLLIGLLGILVGYLV 235 (238)
Q Consensus 221 v~~v~ll~~llG~~~ 235 (238)
+++++|+|+++||=+
T Consensus 31 iAlvGllGilvGeq~ 45 (93)
T COG4317 31 IALVGLLGILVGEQI 45 (93)
T ss_pred HHHHHHHHHHHHHHH
Confidence 459999999999854
No 233
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=31.59 E-value=1.4e+02 Score=23.59 Aligned_cols=30 Identities=17% Similarity=0.262 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 173 SSEAWSMISKLTEEKTSAMQQNQKLRQELE 202 (238)
Q Consensus 173 ~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~ 202 (238)
-+|..+.|..|+.|++.+..-++.|.....
T Consensus 27 RaEmkarIa~LEGE~r~~e~l~~dL~rrIk 56 (134)
T PF08232_consen 27 RAEMKARIAFLEGERRGQENLKKDLKRRIK 56 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468888999999998865555555544433
No 234
>PRK02898 cobalt transport protein CbiN; Provisional
Probab=31.39 E-value=15 Score=27.79 Aligned_cols=23 Identities=26% Similarity=0.544 Sum_probs=20.6
Q ss_pred ccHHHHHHHHHHHHHHHHHhcCC
Q 026478 216 FSTVFVLLIGLLGILVGYLVKTT 238 (238)
Q Consensus 216 ~~~~~v~~v~ll~~llG~~~~~~ 238 (238)
|.++.++..++++.++||+-+|+
T Consensus 71 FaLQAAiGAgiIgY~lG~~~gr~ 93 (100)
T PRK02898 71 FALQAALGAGIIGYILGYYKGRS 93 (100)
T ss_pred HHHHHHHhhhhhheeeeehhhhh
Confidence 88999999999999999997763
No 235
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=31.24 E-value=65 Score=20.77 Aligned_cols=22 Identities=14% Similarity=0.161 Sum_probs=10.6
Q ss_pred cccchHHHHHHHHHHHHHHHHH
Q 026478 169 PKEKSSEAWSMISKLTEEKTSA 190 (238)
Q Consensus 169 ~~~k~~e~~~~i~~L~eE~~~~ 190 (238)
.+.+.....++|..|++-|+.|
T Consensus 17 IEqkiedid~qIaeLe~KR~~L 38 (46)
T PF08946_consen 17 IEQKIEDIDEQIAELEAKRQRL 38 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555443333
No 236
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=31.17 E-value=1.3e+02 Score=21.70 Aligned_cols=32 Identities=22% Similarity=0.396 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 175 EAWSMISKLTEEKTSAMQQNQKLRQELEFVRK 206 (238)
Q Consensus 175 e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~ 206 (238)
+++..+..|-+......+++++|++|-..|+.
T Consensus 27 ~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~ 58 (80)
T PF10224_consen 27 ELQDSLEALSDRVEEVKEENEKLESENEYLQQ 58 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444455555556555555543
No 237
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=31.16 E-value=1.8e+02 Score=20.34 Aligned_cols=54 Identities=13% Similarity=0.059 Sum_probs=34.5
Q ss_pred CCceeEEEEEEcCCCC-eEEEEEeecCCCcEEEeCCceeeCCCCEEEEEEEeccc
Q 026478 21 KKQSSCSMQLTNKTDK-FVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTVTMQAQ 74 (238)
Q Consensus 21 ~~~~~~~l~L~N~s~~-~vaFKVKTT~p~~Y~VrP~~G~I~P~~s~~V~V~lq~~ 74 (238)
++...-.++|+|.... .=.|+|+-...+...-.-..+-|.||++..+.+++.+.
T Consensus 18 g~~~~i~~~V~N~G~~~~~~~~v~~~~~~~~~~~~~i~~L~~g~~~~v~~~~~~~ 72 (101)
T PF07705_consen 18 GEPVTITVTVKNNGTADAENVTVRLYLDGNSVSTVTIPSLAPGESETVTFTWTPP 72 (101)
T ss_dssp TSEEEEEEEEEE-SSS-BEEEEEEEEETTEEEEEEEESEB-TTEEEEEEEEEE-S
T ss_pred CCEEEEEEEEEECCCCCCCCEEEEEEECCceeccEEECCcCCCcEEEEEEEEEeC
Confidence 5678889999999764 34566664333333333334778999999999988764
No 238
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=31.14 E-value=3.1e+02 Score=24.58 Aligned_cols=22 Identities=23% Similarity=0.523 Sum_probs=11.9
Q ss_pred CccHHHHHHHHHHHHHHHHHhcC
Q 026478 215 GFSTVFVLLIGLLGILVGYLVKT 237 (238)
Q Consensus 215 g~~~~~v~~v~ll~~llG~~~~~ 237 (238)
||++..+ +++++++++.++|+|
T Consensus 297 Gy~~~l~-~m~~~~~~~~~~frr 318 (322)
T COG0598 297 GYPIALI-LMLLLALLLYLYFRR 318 (322)
T ss_pred cHHHHHH-HHHHHHHHHHHHHHh
Confidence 5665444 445555555555554
No 239
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.13 E-value=47 Score=25.57 Aligned_cols=22 Identities=32% Similarity=0.320 Sum_probs=17.2
Q ss_pred CCccHHHHHHHHHHHHHHHHHh
Q 026478 214 GGFSTVFVLLIGLLGILVGYLV 235 (238)
Q Consensus 214 ~g~~~~~v~~v~ll~~llG~~~ 235 (238)
.|.+.|..|++.||||..|++.
T Consensus 70 agTsPwglIv~lllGf~AG~ln 91 (116)
T COG5336 70 AGTSPWGLIVFLLLGFGAGVLN 91 (116)
T ss_pred cCCCcHHHHHHHHHHHHHHHHH
Confidence 3566688888889999998874
No 240
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=31.06 E-value=1.2e+02 Score=27.04 Aligned_cols=34 Identities=18% Similarity=0.166 Sum_probs=19.7
Q ss_pred cccchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Q 026478 169 PKEKSSEAWSMISKLTEEKT----SAMQQNQKLRQELE 202 (238)
Q Consensus 169 ~~~k~~e~~~~i~~L~eE~~----~~~~q~~~L~~e~~ 202 (238)
++++.+++..++..|+.+.. .+.+||++|++.+.
T Consensus 71 l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL~ 108 (283)
T TIGR00219 71 LEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELLN 108 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44455555555555533222 37788888887555
No 241
>PRK14158 heat shock protein GrpE; Provisional
Probab=30.94 E-value=1.3e+02 Score=25.44 Aligned_cols=36 Identities=19% Similarity=0.203 Sum_probs=20.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 172 KSSEAWSMISKLTEEKTSAMQQNQKLRQELEFVRKE 207 (238)
Q Consensus 172 k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~~ 207 (238)
...++.+++..|++|...+..+...++.|.+.+|+.
T Consensus 41 ~~~~le~~l~~le~e~~el~d~~lR~~AefeN~RkR 76 (194)
T PRK14158 41 RIKELEEALAAKEAEAAANWDKYLRERADLENYRKR 76 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555556665555555555556666655554
No 242
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=30.93 E-value=1.2e+02 Score=25.15 Aligned_cols=36 Identities=19% Similarity=0.169 Sum_probs=14.2
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 168 VPKEKSSEAWSMISKLTEEKTSAMQQNQKLRQELEF 203 (238)
Q Consensus 168 ~~~~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~ 203 (238)
.++.++.+....|..|+.++..+..++..|..++..
T Consensus 106 ~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~e 141 (194)
T PF08614_consen 106 ELEKELSEKERRLAELEAELAQLEEKIKDLEEELKE 141 (194)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555555555555555444443
No 243
>PRK11637 AmiB activator; Provisional
Probab=30.92 E-value=1.1e+02 Score=28.80 Aligned_cols=8 Identities=25% Similarity=0.036 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q 026478 190 AMQQNQKL 197 (238)
Q Consensus 190 ~~~q~~~L 197 (238)
+.++...+
T Consensus 108 l~~eI~~~ 115 (428)
T PRK11637 108 LNASIAKL 115 (428)
T ss_pred HHHHHHHH
Confidence 33333333
No 244
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=30.90 E-value=1.4e+02 Score=21.98 Aligned_cols=23 Identities=17% Similarity=0.377 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 026478 180 ISKLTEEKTSAMQQNQKLRQELE 202 (238)
Q Consensus 180 i~~L~eE~~~~~~q~~~L~~e~~ 202 (238)
+.++++|...|..||++|+.|..
T Consensus 25 ~~ka~~~~~kL~~en~qlk~Ek~ 47 (87)
T PF10883_consen 25 VKKAKKQNAKLQKENEQLKTEKA 47 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555544
No 245
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=30.83 E-value=1.4e+02 Score=22.03 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 184 TEEKTSAMQQNQKLRQELEFVRKE 207 (238)
Q Consensus 184 ~eE~~~~~~q~~~L~~e~~~l~~~ 207 (238)
...+..+..|+..|.+|.+.|+.+
T Consensus 48 ek~v~~L~~e~~~l~~E~e~L~~~ 71 (87)
T PF12709_consen 48 EKKVDELENENKALKRENEQLKKK 71 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555443
No 246
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=30.20 E-value=1.3e+02 Score=24.11 Aligned_cols=15 Identities=20% Similarity=0.233 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHH
Q 026478 183 LTEEKTSAMQQNQKL 197 (238)
Q Consensus 183 L~eE~~~~~~q~~~L 197 (238)
|..|+..++.++..|
T Consensus 71 L~~EL~~l~sEk~~L 85 (140)
T PF10473_consen 71 LELELDTLRSEKENL 85 (140)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 247
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=30.17 E-value=82 Score=29.51 Aligned_cols=36 Identities=8% Similarity=0.050 Sum_probs=21.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 171 EKSSEAWSMISKLTEEKTSAMQQNQKLRQELEFVRK 206 (238)
Q Consensus 171 ~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~ 206 (238)
.+...+..++..|+++...+.+|.+++++|+..|+.
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (398)
T PTZ00454 29 KELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQS 64 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344445555555666666666666666666666643
No 248
>PRK07857 hypothetical protein; Provisional
Probab=30.06 E-value=1.9e+02 Score=22.07 Aligned_cols=32 Identities=22% Similarity=0.152 Sum_probs=16.8
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 167 EVPKEKSSEAWSMISKLTEEKTSAMQQNQKLR 198 (238)
Q Consensus 167 ~~~~~k~~e~~~~i~~L~eE~~~~~~q~~~L~ 198 (238)
.++..+.++.+.+|.+|=.||..+.++.-++|
T Consensus 31 ~~lR~eID~ID~eIl~LL~eR~~la~eIg~~K 62 (106)
T PRK07857 31 DELREEIDRLDAEILALVKRRTEVSQAIGKAR 62 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555554443
No 249
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=29.95 E-value=1.4e+02 Score=23.88 Aligned_cols=31 Identities=26% Similarity=0.300 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 175 EAWSMISKLTEEKTSAMQQNQKLRQELEFVR 205 (238)
Q Consensus 175 e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~ 205 (238)
.+.++|..|++++..+..+++.|..|+..+|
T Consensus 49 n~k~eie~L~~el~~lt~el~~L~~EL~~l~ 79 (140)
T PF10473_consen 49 NSKAEIETLEEELEELTSELNQLELELDTLR 79 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666555555555555555444
No 250
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=29.88 E-value=1.1e+02 Score=26.49 Aligned_cols=23 Identities=22% Similarity=0.185 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 026478 175 EAWSMISKLTEEKTSAMQQNQKL 197 (238)
Q Consensus 175 e~~~~i~~L~eE~~~~~~q~~~L 197 (238)
++.+++..|+.|...+..+|+++
T Consensus 53 ~L~~e~~~l~~e~e~L~~~~~~l 75 (251)
T PF11932_consen 53 ELLAEYRQLEREIENLEVYNEQL 75 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444333333333
No 251
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=29.86 E-value=67 Score=31.27 Aligned_cols=38 Identities=24% Similarity=0.170 Sum_probs=29.3
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 168 VPKEKSSEAWSMISKLTEEKTSAMQQNQKLRQELEFVR 205 (238)
Q Consensus 168 ~~~~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~ 205 (238)
+++.+++.+.+...+|.+-++.+++|..+|++|++.|.
T Consensus 5 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 42 (512)
T TIGR03689 5 ELQATNSSLGARNAKLAELLKAARDKLSKLKSQLEQLA 42 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34556667777788888888888888888888888774
No 252
>PF06483 ChiC: Chitinase C; InterPro: IPR009470 This ~170 aa region is found at the C-terminal to the catalytic domain (IPR001223 from INTERPRO) found in members of glycoside hydrolase family 18.
Probab=29.85 E-value=61 Score=27.09 Aligned_cols=25 Identities=20% Similarity=0.348 Sum_probs=21.2
Q ss_pred CeEEEEEeecCCCcEEEeCCceeeCCCCEEEEEEEe
Q 026478 36 KFVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTVTM 71 (238)
Q Consensus 36 ~~vaFKVKTT~p~~Y~VrP~~G~I~P~~s~~V~V~l 71 (238)
++|+||+ |.+.-|.||+++++.+..
T Consensus 116 Hrvs~tl-----------p~wqslapG~s~~~~~~Y 140 (180)
T PF06483_consen 116 HRVSFTL-----------PAWQSLAPGASVELDMVY 140 (180)
T ss_pred EEEEEEC-----------CCccccCCCCEEEEeEEE
Confidence 6777777 788889999999999875
No 253
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=29.79 E-value=1e+02 Score=27.01 Aligned_cols=33 Identities=15% Similarity=0.185 Sum_probs=25.3
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 168 VPKEKSSEAWSMISKLTEEKTSAMQQNQKLRQE 200 (238)
Q Consensus 168 ~~~~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e 200 (238)
-.+.+..|+++++.++.++...+++|.+.|+.+
T Consensus 90 RFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~D 122 (248)
T PF08172_consen 90 RFRQRNAELEEELRKQQQTISSLRREVESLRAD 122 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677788888888888888888888888766
No 254
>PRK14162 heat shock protein GrpE; Provisional
Probab=29.59 E-value=1.5e+02 Score=25.09 Aligned_cols=32 Identities=9% Similarity=0.154 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 175 EAWSMISKLTEEKTSAMQQNQKLRQELEFVRK 206 (238)
Q Consensus 175 e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~ 206 (238)
++.+++..|+++...+..+...++.|.+.+|+
T Consensus 43 ~l~~~l~~l~~e~~elkd~~lR~~AEfeN~rk 74 (194)
T PRK14162 43 DLEKEIADLKAKNKDLEDKYLRSQAEIQNMQN 74 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444443
No 255
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=29.58 E-value=1e+02 Score=30.61 Aligned_cols=28 Identities=21% Similarity=0.401 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 175 EAWSMISKLTEEKTSAMQQNQKLRQELE 202 (238)
Q Consensus 175 e~~~~i~~L~eE~~~~~~q~~~L~~e~~ 202 (238)
+....+.+|++|++.|..+++.++.+..
T Consensus 426 ~~~~~ve~l~~e~~~L~~~~ee~k~eie 453 (652)
T COG2433 426 KLEETVERLEEENSELKRELEELKREIE 453 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555544444444444433
No 256
>COG3121 FimC P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=29.52 E-value=1.3e+02 Score=26.02 Aligned_cols=43 Identities=14% Similarity=0.211 Sum_probs=32.4
Q ss_pred EEEEEEcCCCCeEEEE--EeecCCCcEEEeCCceeeCCCCEEEEEEE
Q 026478 26 CSMQLTNKTDKFVAFK--VKTTNPKKYCVRPNTGIILPRTSCAVTVT 70 (238)
Q Consensus 26 ~~l~L~N~s~~~vaFK--VKTT~p~~Y~VrP~~G~I~P~~s~~V~V~ 70 (238)
..|+++|+|..++.|- .-+. .++-.. -+.+.|.|+++..+.+.
T Consensus 165 ~~l~v~Nptpy~vtl~~~~l~~-~~~~~~-~~~~mv~P~s~~~~~l~ 209 (235)
T COG3121 165 NLLTVKNPTPYYVTLANLTLNV-GGRKLG-LNSGMVAPFSTRQFPLP 209 (235)
T ss_pred CEEEEECCCCcEEEEEEEEEee-CceecC-CCcceECCCccceeecC
Confidence 6899999999999998 4333 433333 78899999999886553
No 257
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=29.41 E-value=85 Score=27.61 Aligned_cols=32 Identities=19% Similarity=0.066 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 174 SEAWSMISKLTEEKTSAMQQNQKLRQELEFVR 205 (238)
Q Consensus 174 ~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~ 205 (238)
.++..+|..|+.|...|+.+++.++-++..+.
T Consensus 57 ~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~ 88 (263)
T PRK10803 57 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVV 88 (263)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 36677777777777777777777777776543
No 258
>PF04639 Baculo_E56: Baculoviral E56 protein, specific to ODV envelope; InterPro: IPR006733 This family represents the E56 protein, which is localized to the occlusion derived virus (ODV) envelope, but not to the budded virus (BV) envelope []. Signals necessary for transport and/or retention into this structure are believed to be found within the C-terminal portion of ODV-E56.; GO: 0019031 viral envelope
Probab=29.28 E-value=38 Score=30.43 Aligned_cols=24 Identities=17% Similarity=0.343 Sum_probs=19.5
Q ss_pred CCccHHHHHHHHHHHHHHHHHhcC
Q 026478 214 GGFSTVFVLLIGLLGILVGYLVKT 237 (238)
Q Consensus 214 ~g~~~~~v~~v~ll~~llG~~~~~ 237 (238)
..+|+.+++...|+=++||||+.|
T Consensus 276 ~l~piil~IG~vl~i~~Ig~~ifK 299 (305)
T PF04639_consen 276 SLLPIILIIGGVLLIVFIGYFIFK 299 (305)
T ss_pred hhhHHHHHHHHHHHHHHhhheeeE
Confidence 357777888888888899999876
No 259
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=29.16 E-value=84 Score=31.22 Aligned_cols=36 Identities=25% Similarity=0.258 Sum_probs=25.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 171 EKSSEAWSMISKLTEEKTSAMQQNQKLRQELEFVRK 206 (238)
Q Consensus 171 ~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~ 206 (238)
..+.++.+++.+|.++++++.++.+.++++.+.|+.
T Consensus 93 ~~~~~~~~~i~~l~~~~~~L~~~~~~l~~~~~~l~~ 128 (646)
T PRK05771 93 EELEKIEKEIKELEEEISELENEIKELEQEIERLEP 128 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 455666777777777777777777777777666553
No 260
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=29.07 E-value=99 Score=22.44 Aligned_cols=31 Identities=16% Similarity=0.167 Sum_probs=14.3
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 169 PKEKSSEAWSMISKLTEEKTSAMQQNQKLRQ 199 (238)
Q Consensus 169 ~~~k~~e~~~~i~~L~eE~~~~~~q~~~L~~ 199 (238)
++++...+..+|.+|+.+...+..+.+.++.
T Consensus 67 L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~ 97 (106)
T PF01920_consen 67 LEERIEKLEKEIKKLEKQLKYLEKKLKELKK 97 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555544444444443333
No 261
>KOG4112 consensus Signal peptidase subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.93 E-value=61 Score=24.28 Aligned_cols=20 Identities=15% Similarity=0.537 Sum_probs=15.1
Q ss_pred ccHHHHHHHHHHHHHHHHHh
Q 026478 216 FSTVFVLLIGLLGILVGYLV 235 (238)
Q Consensus 216 ~~~~~v~~v~ll~~llG~~~ 235 (238)
|+=+++.+.+|+||+.||+-
T Consensus 27 ~~q~ilti~aiVg~i~Gf~~ 46 (101)
T KOG4112|consen 27 FQQLILTIGAIVGFIYGFAQ 46 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44456678889999999874
No 262
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=28.91 E-value=93 Score=23.86 Aligned_cols=36 Identities=14% Similarity=0.115 Sum_probs=28.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 172 KSSEAWSMISKLTEEKTSAMQQNQKLRQELEFVRKE 207 (238)
Q Consensus 172 k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~~ 207 (238)
.+..+..++..++.|...+.+++..|..|...|+..
T Consensus 51 ~~~~l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg 86 (117)
T COG2919 51 DVLQLQRQIAAQQAELEKLSARNTALEAEIKDLKDG 86 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 455777788888888888888888888888877643
No 263
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=28.82 E-value=90 Score=27.86 Aligned_cols=27 Identities=26% Similarity=0.417 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 176 AWSMISKLTEEKTSAMQQNQKLRQELE 202 (238)
Q Consensus 176 ~~~~i~~L~eE~~~~~~q~~~L~~e~~ 202 (238)
-.++...+..++.++.+||++|++.+.
T Consensus 81 ~l~~~~~~~~~~~~l~~EN~~Lr~lL~ 107 (284)
T COG1792 81 ELAELEQLLEEVESLEEENKRLKELLD 107 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 333444455556666677777666554
No 264
>PRK14151 heat shock protein GrpE; Provisional
Probab=28.79 E-value=1.5e+02 Score=24.61 Aligned_cols=28 Identities=25% Similarity=0.386 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 179 MISKLTEEKTSAMQQNQKLRQELEFVRK 206 (238)
Q Consensus 179 ~i~~L~eE~~~~~~q~~~L~~e~~~l~~ 206 (238)
++..|++|...+..+...++.|.+.+|+
T Consensus 28 ~i~~le~e~~el~d~~lR~~Ae~eN~rk 55 (176)
T PRK14151 28 RVQELEEQLAAAKDQSLRAAADLQNVRR 55 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444433334444444444433
No 265
>PF14796 AP3B1_C: Clathrin-adaptor complex-3 beta-1 subunit C-terminal
Probab=28.70 E-value=2.3e+02 Score=22.81 Aligned_cols=59 Identities=17% Similarity=0.282 Sum_probs=37.9
Q ss_pred eeeeccc---C-CCceeEEEEEEcCCCCeEE-EEEeecC---CCcEEEeCCceeeCCCCEEEEEEEe
Q 026478 13 ELKFPFE---L-KKQSSCSMQLTNKTDKFVA-FKVKTTN---PKKYCVRPNTGIILPRTSCAVTVTM 71 (238)
Q Consensus 13 eL~F~~~---~-~~~~~~~l~L~N~s~~~va-FKVKTT~---p~~Y~VrP~~G~I~P~~s~~V~V~l 71 (238)
+.+|.+. + .+-+.-.|+++|.++..+. -+|.... .-+-.--|..+.|+||+++.+.+-.
T Consensus 72 ~Y~F~RqP~~~s~~mvsIql~ftN~s~~~i~~I~i~~k~l~~g~~i~~F~~I~~L~pg~s~t~~lgI 138 (145)
T PF14796_consen 72 EYRFSRQPSLYSPSMVSIQLTFTNNSDEPIKNIHIGEKKLPAGMRIHEFPEIESLEPGASVTVSLGI 138 (145)
T ss_pred EEEEccCCcCCCCCcEEEEEEEEecCCCeecceEECCCCCCCCcEeeccCcccccCCCCeEEEEEEE
Confidence 3566552 2 3446678999999987553 2333322 2234445889999999998877643
No 266
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=28.59 E-value=3.4e+02 Score=25.71 Aligned_cols=13 Identities=31% Similarity=0.158 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHH
Q 026478 221 VLLIGLLGILVGY 233 (238)
Q Consensus 221 v~~v~ll~~llG~ 233 (238)
+++.+++|+++|.
T Consensus 417 l~~g~~~Gl~lg~ 429 (498)
T TIGR03007 417 MLAGLLGGLGAGI 429 (498)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444555443
No 267
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=28.56 E-value=1.3e+02 Score=24.15 Aligned_cols=39 Identities=23% Similarity=0.247 Sum_probs=26.7
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 168 VPKEKSSEAWSMISKLTEEKTSAMQQNQKLRQELEFVRK 206 (238)
Q Consensus 168 ~~~~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~ 206 (238)
-++.+..++...+.+|++++..+.+....+++++..+..
T Consensus 98 ~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q 136 (145)
T COG1730 98 FLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQ 136 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777777777777777777777777776665543
No 268
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=28.48 E-value=1.5e+02 Score=21.73 Aligned_cols=27 Identities=15% Similarity=0.051 Sum_probs=13.4
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHH
Q 026478 169 PKEKSSEAWSMISKLTEEKTSAMQQNQ 195 (238)
Q Consensus 169 ~~~k~~e~~~~i~~L~eE~~~~~~q~~ 195 (238)
|++++.++.+++..++.+++.+..+..
T Consensus 75 l~~~l~~l~~~~~~~~~~~~~~~~~~~ 101 (104)
T PF13600_consen 75 LEEELEALEDELAALQDEIQALEAQIA 101 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555554444443
No 269
>PRK02119 hypothetical protein; Provisional
Probab=28.48 E-value=1.6e+02 Score=20.64 Aligned_cols=33 Identities=9% Similarity=-0.104 Sum_probs=24.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 172 KSSEAWSMISKLTEEKTSAMQQNQKLRQELEFV 204 (238)
Q Consensus 172 k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l 204 (238)
-+.+++..|.+-+.++..+.++.+.|.+.+..+
T Consensus 24 tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~ 56 (73)
T PRK02119 24 LLEELNQALIEQQFVIDKMQVQLRYMANKLKDM 56 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345777777777777778888888887766654
No 270
>PRK14148 heat shock protein GrpE; Provisional
Probab=28.24 E-value=1.4e+02 Score=25.18 Aligned_cols=35 Identities=20% Similarity=0.250 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 173 SSEAWSMISKLTEEKTSAMQQNQKLRQELEFVRKE 207 (238)
Q Consensus 173 ~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~~ 207 (238)
...+.+.+..|+++...+......++.|.+.+|+.
T Consensus 42 ~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR 76 (195)
T PRK14148 42 LERAKDTIKELEDSCDQFKDEALRAKAEMENIRKR 76 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666555555555555555555544
No 271
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=28.15 E-value=23 Score=29.19 Aligned_cols=19 Identities=37% Similarity=0.441 Sum_probs=2.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 026478 183 LTEEKTSAMQQNQKLRQEL 201 (238)
Q Consensus 183 L~eE~~~~~~q~~~L~~e~ 201 (238)
|+++.+.|+.|.+.|++|+
T Consensus 29 L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 29 LREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHCH--------------
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444455555555
No 272
>PF09640 DUF2027: Domain of unknown function (DUF2027); InterPro: IPR018598 This protein domain is of unknown function. though putatively involved in DNA mismatch repair. It is associated with IPR002625 from INTERPRO. ; PDB: 2HUH_A.
Probab=27.98 E-value=1.1e+02 Score=25.16 Aligned_cols=68 Identities=12% Similarity=0.217 Sum_probs=46.1
Q ss_pred eeEEEEEEcCCCCeEEEEEeecCCCcEEEeCCceeeCCCCEEEEEEEecccccCCCCCCCCCeEEEEEEeCCCCC
Q 026478 24 SSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTVTMQAQKEAPPDFQCKDKFLLLSVVAPDGA 98 (238)
Q Consensus 24 ~~~~l~L~N~s~~~vaFKVKTT~p~~Y~VrP~~G~I~P~~s~~V~V~lq~~~~~p~~~~~kdKFlVqs~~v~~~~ 98 (238)
..-..-|.|-|+-.+.|-.-+...+.|.+| +.|.|+|+..+-|.-.-... ...-.+..||.+.--.+.
T Consensus 18 T~fE~YlVNDSNYy~~y~y~~~~g~~w~lr-s~G~iEPNtKl~ieef~~~e------LN~~~~v~vQ~iAyK~~K 85 (162)
T PF09640_consen 18 TRFECYLVNDSNYYLHYTYLTAEGNSWTLR-SAGEIEPNTKLFIEEFSKEE------LNDLERVAVQLIAYKKDK 85 (162)
T ss_dssp --EEEEEEE-SSSEEEEEEEEEETTEEEEE-EEEEE-TTEEEEEEEE-GGG------GGG-SSEEEEEEEE-SSS
T ss_pred CceEEEEEecCccEEEEEEEeccCCeEEEE-ecceECCCceeehhhcCHHH------hhccceeEEEEEEEcCCC
Confidence 345678899999999999999888899998 68999999988876433221 113456777777765543
No 273
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=27.89 E-value=98 Score=21.77 Aligned_cols=16 Identities=38% Similarity=0.424 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 026478 183 LTEEKTSAMQQNQKLR 198 (238)
Q Consensus 183 L~eE~~~~~~q~~~L~ 198 (238)
|.+..+.|.++...|.
T Consensus 47 L~~qv~~Ls~qv~~Ls 62 (70)
T PF04899_consen 47 LSEQVNNLSQQVQRLS 62 (70)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 274
>COG2841 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.84 E-value=1.9e+02 Score=20.43 Aligned_cols=34 Identities=21% Similarity=0.299 Sum_probs=20.8
Q ss_pred chHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH-HHH
Q 026478 172 KSSEAWSMISKLT--------EEKTSAMQQNQKLRQELE-FVR 205 (238)
Q Consensus 172 k~~e~~~~i~~L~--------eE~~~~~~q~~~L~~e~~-~l~ 205 (238)
+..+++..|.... +|...+.+|.-+|++|+. .|+
T Consensus 25 ~hn~LDd~I~~~E~n~~~~s~~ev~~LKKqkL~LKDEi~~~L~ 67 (72)
T COG2841 25 KHNELDDRIKRAEGNRQPGSDAEVSNLKKQKLQLKDEIASILQ 67 (72)
T ss_pred HHhHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3445555555443 366677778888888866 444
No 275
>PRK14154 heat shock protein GrpE; Provisional
Probab=27.78 E-value=1.6e+02 Score=25.25 Aligned_cols=28 Identities=14% Similarity=0.280 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 179 MISKLTEEKTSAMQQNQKLRQELEFVRK 206 (238)
Q Consensus 179 ~i~~L~eE~~~~~~q~~~L~~e~~~l~~ 206 (238)
++..|+++...+..+...++.|.+.+|+
T Consensus 60 el~~le~e~~elkd~~lRl~ADfeNyRK 87 (208)
T PRK14154 60 QLTRMERKVDEYKTQYLRAQAEMDNLRK 87 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444443
No 276
>TIGR03784 marine_sortase sortase, marine proteobacterial type. Members of this protein family are sortase enzymes, cysteine transpeptidases involved in protein sorting activities. Members of this family tend to be found in proteobacteria, rather than in Gram-positive bacteria where sortases attach proteins to the Gram-positive cell wall or participate in pilin cross-linking. Many species with this sortase appear to contain a signal target sequence, a protein with a Vault protein inter-alpha-trypsin domain (pfam08487) and a von Willebrand factor type A domain (pfam00092), encoded by an adjacent gene. These sortases are designated subfamily 6 according to Comfort and Clubb (2004).
Probab=27.71 E-value=3.2e+02 Score=22.47 Aligned_cols=59 Identities=19% Similarity=0.227 Sum_probs=36.9
Q ss_pred EEEEEEcCCCCeEEEEEeecCCCcEEEeCC-ceeeCCCC-EEEEEEEecccccCCCCCCCCCeEEEE
Q 026478 26 CSMQLTNKTDKFVAFKVKTTNPKKYCVRPN-TGIILPRT-SCAVTVTMQAQKEAPPDFQCKDKFLLL 90 (238)
Q Consensus 26 ~~l~L~N~s~~~vaFKVKTT~p~~Y~VrP~-~G~I~P~~-s~~V~V~lq~~~~~p~~~~~kdKFlVq 90 (238)
-.|.|+....+...|+|..+ ..|.|+ .+++.+.. ..-.-||+-|+.... ....++|+|+
T Consensus 113 D~I~v~~~~g~~~~Y~V~~~----~iV~~~d~~v~~~~~~~~LtLiTC~Pf~~~~--~~~~~R~vV~ 173 (174)
T TIGR03784 113 DVIRLQTPDGQWQSYQVTAT----RVVDESETGLDLPADDSQLVLITCYPFDALG--SGGPLRYVVE 173 (174)
T ss_pred CEEEEEECCCeEEEEEEeEE----EEECCccceeccCCCCCEEEEEeCCCCCCCC--CCCCcEEEEE
Confidence 46777777777778888654 466665 45555533 444557777764321 1357899886
No 277
>PF13205 Big_5: Bacterial Ig-like domain
Probab=27.32 E-value=2.3e+02 Score=20.18 Aligned_cols=56 Identities=20% Similarity=0.326 Sum_probs=36.6
Q ss_pred eeeecccCC-CceeEEEEEE--cCCCCeEEEEEeecCCCcEEEeCCceeeCCCCEEEEEEEe
Q 026478 13 ELKFPFELK-KQSSCSMQLT--NKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTVTM 71 (238)
Q Consensus 13 eL~F~~~~~-~~~~~~l~L~--N~s~~~vaFKVKTT~p~~Y~VrP~~G~I~P~~s~~V~V~l 71 (238)
.|.|..+.+ ......+.+. +....+|.+. ....+.+.+.|..+ +.||..+.|.|.-
T Consensus 26 ~i~Fs~~v~~~s~~~~~~~~~~~~~~~~v~~~--~~~~~~~~i~p~~~-L~~~t~Y~v~i~~ 84 (107)
T PF13205_consen 26 VITFSEPVDPASVSSAITITDSNGSGVPVSFS--SWDGNTLTITPSQP-LKPGTTYTVTIDS 84 (107)
T ss_pred EEEECCceecCccceEEEEEecCCCcEEEEEE--EccCCEEEEEECCc-CCCCCEEEEEECC
Confidence 477776654 2344555664 3444555555 44458899999944 8889999999844
No 278
>PRK14147 heat shock protein GrpE; Provisional
Probab=27.32 E-value=1.8e+02 Score=23.94 Aligned_cols=26 Identities=23% Similarity=0.254 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 180 ISKLTEEKTSAMQQNQKLRQELEFVR 205 (238)
Q Consensus 180 i~~L~eE~~~~~~q~~~L~~e~~~l~ 205 (238)
+..|++|...+..+...++.|.+.+|
T Consensus 27 l~~l~~e~~elkd~~lR~~Ad~eN~r 52 (172)
T PRK14147 27 VESLRSEIALVKADALRERADLENQR 52 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333344444333
No 279
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=27.24 E-value=60 Score=27.89 Aligned_cols=21 Identities=14% Similarity=0.295 Sum_probs=15.0
Q ss_pred ccHHHHHHHHHHHHHHHHHhc
Q 026478 216 FSTVFVLLIGLLGILVGYLVK 236 (238)
Q Consensus 216 ~~~~~v~~v~ll~~llG~~~~ 236 (238)
...++-.+.+..|++|||+..
T Consensus 198 ~qw~~g~v~~~~Al~La~~r~ 218 (220)
T KOG3156|consen 198 IQWLIGVVTGTSALVLAYLRL 218 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 334455777888999999864
No 280
>PRK14155 heat shock protein GrpE; Provisional
Probab=27.22 E-value=1.4e+02 Score=25.50 Aligned_cols=26 Identities=23% Similarity=0.234 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 180 ISKLTEEKTSAMQQNQKLRQELEFVR 205 (238)
Q Consensus 180 i~~L~eE~~~~~~q~~~L~~e~~~l~ 205 (238)
+.+|++|...+..+...++.|.+.+|
T Consensus 22 l~~le~e~~elkd~~lR~~AefeN~R 47 (208)
T PRK14155 22 IEALKAEVAALKDQALRYAAEAENTK 47 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333334444444333
No 281
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=27.09 E-value=1.4e+02 Score=22.33 Aligned_cols=41 Identities=12% Similarity=0.084 Sum_probs=25.7
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026478 168 VPKEKSSEAWSMISKLTEEKTSAMQQNQKLRQELEFVRKEI 208 (238)
Q Consensus 168 ~~~~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~~~ 208 (238)
+|+-++.=+..+-.-|+.-+..+-.||+.|..|+..++...
T Consensus 5 eLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~ 45 (96)
T PF11365_consen 5 ELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKSKY 45 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34445544444444455555567778888888888887643
No 282
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=27.06 E-value=1.3e+02 Score=20.69 Aligned_cols=34 Identities=15% Similarity=0.152 Sum_probs=22.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 172 KSSEAWSMISKLTEEKTSAMQQNQKLRQELEFVR 205 (238)
Q Consensus 172 k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~ 205 (238)
-+.+++..+.+.+.++..+.++.+.|.+.+..++
T Consensus 19 ~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 19 TIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4567777788888888888888888887777665
No 283
>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.90 E-value=3.3e+02 Score=23.63 Aligned_cols=21 Identities=14% Similarity=0.169 Sum_probs=15.0
Q ss_pred CCccHHHHHHHHHHHHHHHHH
Q 026478 214 GGFSTVFVLLIGLLGILVGYL 234 (238)
Q Consensus 214 ~g~~~~~v~~v~ll~~llG~~ 234 (238)
..+=+..|+.+|++-+|+-||
T Consensus 210 dslILa~Vis~C~llllfy~~ 230 (231)
T KOG3208|consen 210 DSLILAAVISVCTLLLLFYWI 230 (231)
T ss_pred hhHHHHHHHHHHHHHHHHHHh
Confidence 456666788888887777665
No 284
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=26.81 E-value=1.2e+02 Score=30.07 Aligned_cols=34 Identities=18% Similarity=0.317 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 174 SEAWSMISKLTEEKTSAMQQNQKLRQELEFVRKE 207 (238)
Q Consensus 174 ~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~~ 207 (238)
.++..+|.+|+.|+..|++|+.++..++..++++
T Consensus 514 ~nLE~ev~~l~~eKeqLl~Er~~~d~~L~~~kqq 547 (604)
T KOG3863|consen 514 LNLEDEVEKLQKEKEQLLRERDELDSTLGVMKQQ 547 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777777776666666554
No 285
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=26.71 E-value=1.1e+02 Score=27.91 Aligned_cols=35 Identities=23% Similarity=0.245 Sum_probs=21.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 171 EKSSEAWSMISKLTEEKTSAMQQNQKLRQELEFVR 205 (238)
Q Consensus 171 ~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~ 205 (238)
.+..++..++..++.|...+.+|.+++++++..++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (364)
T TIGR01242 6 VRIRKLEDEKRSLEKEKIRLERELERLRSEIERLR 40 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455566666666666666666666666666554
No 286
>PF09716 ETRAMP: Malarial early transcribed membrane protein (ETRAMP); InterPro: IPR006389 These sequences represent a family of proteins from the malaria parasite Plasmodium falciparum, several of which have been shown to be expressed specifically in the ring stage as well as the rodent parasite Plasmodium yoelii []. A homologue from Plasmodium chabaudi was localized to the parasitophorous vacuole membrane []. Members have an initial hydrophobic, Phe/Tyr-rich stretch long enough to span the membrane, a highly charged region rich in Lys, a second putative transmembrane region, and a second highly charged, low complexity sequence region. Some members have up to 100 residues of additional C-terminal sequence. These genes have been shown to be found in the sub-telomeric regions of both Plasmodium falciparum and P. yoelii chromosomes.
Probab=26.65 E-value=1.5e+02 Score=21.44 Aligned_cols=22 Identities=27% Similarity=0.215 Sum_probs=14.3
Q ss_pred ccHHHHHHHHHHHHHHHHHhcC
Q 026478 216 FSTVFVLLIGLLGILVGYLVKT 237 (238)
Q Consensus 216 ~~~~~v~~v~ll~~llG~~~~~ 237 (238)
+|.....+++++|..+||-+++
T Consensus 58 iS~i~s~lalli~~~~G~g~y~ 79 (84)
T PF09716_consen 58 ISTIASGLALLIATALGYGYYK 79 (84)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 5555555555777777887764
No 287
>PF07664 FeoB_C: Ferrous iron transport protein B C terminus; InterPro: IPR011640 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions []. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus has been previously erroneously described as being ATP-binding []. Recent work shows that it is similar to eukaryotic G-proteins and that it is a GTPase [].; GO: 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane
Probab=26.58 E-value=79 Score=20.67 Aligned_cols=16 Identities=44% Similarity=0.625 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHhcC
Q 026478 222 LLIGLLGILVGYLVKT 237 (238)
Q Consensus 222 ~~v~ll~~llG~~~~~ 237 (238)
++-.+++++.|+++++
T Consensus 7 ~~~~~~~l~~~~il~~ 22 (54)
T PF07664_consen 7 LLGILVALLVGLILKK 22 (54)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4555666777777764
No 288
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=26.56 E-value=99 Score=27.88 Aligned_cols=27 Identities=19% Similarity=0.195 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 176 AWSMISKLTEEKTSAMQQNQKLRQELE 202 (238)
Q Consensus 176 ~~~~i~~L~eE~~~~~~q~~~L~~e~~ 202 (238)
+..+...|++|++.+++|++.++.++.
T Consensus 37 l~~~~~~lr~e~~~l~~~~~~~~~~~~ 63 (308)
T PF11382_consen 37 LEDQFDSLREENDELRAELDALQAQLN 63 (308)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555554443
No 289
>PF09489 CbtB: Probable cobalt transporter subunit (CbtB); InterPro: IPR012667 This entry represents a family of proteins which have been proposed to act as cobalt transporters acting in concert with vitamin B12 biosynthesis systems []. Evidence for this assignment includes 1) prediction of a single transmembrane segment and a C-terminal histidine-rich motif likely to be a metal-binding site, 2) positional gene linkage with known B12 biosynthesis genes, 3) upstream proximity of B12 transcriptional regulatory sites, 4) the absence of other known cobalt import systems and 5) the obligate co-localization with a protein (CbtA) predicted to have five additional transmembrane segments.
Probab=26.52 E-value=82 Score=21.06 Aligned_cols=19 Identities=37% Similarity=0.489 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 026478 218 TVFVLLIGLLGILVGYLVK 236 (238)
Q Consensus 218 ~~~v~~v~ll~~llG~~~~ 236 (238)
+..+++.+++|.+|.|+.+
T Consensus 13 ~~~~~~a~~lg~~l~~~~g 31 (54)
T PF09489_consen 13 LVQAAAAALLGLLLLYFVG 31 (54)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4456677777888888765
No 290
>COG4836 Predicted membrane protein [Function unknown]
Probab=26.28 E-value=90 Score=22.13 Aligned_cols=22 Identities=36% Similarity=0.422 Sum_probs=17.2
Q ss_pred CCccHHHHHHHHHHHHHHHHHh
Q 026478 214 GGFSTVFVLLIGLLGILVGYLV 235 (238)
Q Consensus 214 ~g~~~~~v~~v~ll~~llG~~~ 235 (238)
.|...+.-+++.+++++|||.+
T Consensus 37 k~~~tQa~llmI~vtI~lg~~v 58 (77)
T COG4836 37 KGKVTQARLLMIFVTIALGYAV 58 (77)
T ss_pred cCchhHHHHHHHHHHHHHHHHH
Confidence 4677777788888899999865
No 291
>PRK00295 hypothetical protein; Provisional
Probab=26.23 E-value=2.3e+02 Score=19.61 Aligned_cols=34 Identities=9% Similarity=-0.089 Sum_probs=24.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 172 KSSEAWSMISKLTEEKTSAMQQNQKLRQELEFVR 205 (238)
Q Consensus 172 k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~ 205 (238)
-+.+++..|.+.+.++..+.++.+.|.+.+..+.
T Consensus 20 tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 20 TIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3457777777778788888888888877666554
No 292
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=26.04 E-value=1.5e+02 Score=29.50 Aligned_cols=39 Identities=28% Similarity=0.241 Sum_probs=26.2
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 169 PKEKSSEAWSMISKLTEEKTSAMQQNQKLRQELEFVRKE 207 (238)
Q Consensus 169 ~~~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~~ 207 (238)
+..++.++..+++.|+.+...+.+++..|+.+++.+++.
T Consensus 427 ~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~ 465 (652)
T COG2433 427 LEETVERLEEENSELKRELEELKREIEKLESELERFRRE 465 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777777777777777777777776655543
No 293
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=25.95 E-value=89 Score=20.54 Aligned_cols=18 Identities=28% Similarity=0.623 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHhcC
Q 026478 220 FVLLIGLLGILVGYLVKT 237 (238)
Q Consensus 220 ~v~~v~ll~~llG~~~~~ 237 (238)
+.+++++|++++-.+.++
T Consensus 9 i~iv~~lLg~~I~~~~K~ 26 (50)
T PF12606_consen 9 IFIVMGLLGLSICTTLKA 26 (50)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 345666677776666553
No 294
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=25.82 E-value=21 Score=27.38 Aligned_cols=38 Identities=18% Similarity=0.221 Sum_probs=25.1
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 168 VPKEKSSEAWSMISKLTEEKTSAMQQNQKLRQELEFVR 205 (238)
Q Consensus 168 ~~~~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~ 205 (238)
+..+-++++..++..|..|+..+.+++..|+.++..++
T Consensus 22 eVD~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~ 59 (131)
T PF05103_consen 22 EVDDFLDELAEELERLQRENAELKEEIEELQAQLEELR 59 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 44566777788888888888888888887766655443
No 295
>PRK10722 hypothetical protein; Provisional
Probab=25.61 E-value=2.3e+02 Score=24.93 Aligned_cols=29 Identities=17% Similarity=0.107 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 177 WSMISKLTEEKTSAMQQNQKLRQELEFVR 205 (238)
Q Consensus 177 ~~~i~~L~eE~~~~~~q~~~L~~e~~~l~ 205 (238)
++++-+|+++...+..+.+....+++.|.
T Consensus 175 D~qlD~lrqq~~~Lq~~L~~t~rKLEnLT 203 (247)
T PRK10722 175 DSELDALRQQQQRLQYQLELTTRKLENLT 203 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555443
No 296
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=25.57 E-value=37 Score=25.27 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=14.6
Q ss_pred CccHHH-HHHHHHHHHHHHHHhcC
Q 026478 215 GFSTVF-VLLIGLLGILVGYLVKT 237 (238)
Q Consensus 215 g~~~~~-v~~v~ll~~llG~~~~~ 237 (238)
|..+-. +++.+|++||+.||+.+
T Consensus 70 gi~vg~~~~v~~lv~~l~w~f~~r 93 (96)
T PTZ00382 70 GISVAVVAVVGGLVGFLCWWFVCR 93 (96)
T ss_pred EEEeehhhHHHHHHHHHhheeEEe
Confidence 555543 34557778888887754
No 297
>PRK02793 phi X174 lysis protein; Provisional
Probab=25.53 E-value=2e+02 Score=20.09 Aligned_cols=33 Identities=12% Similarity=0.047 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 173 SSEAWSMISKLTEEKTSAMQQNQKLRQELEFVR 205 (238)
Q Consensus 173 ~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~ 205 (238)
+.+++..+.+.+.++..+.++.+.|.+.+..++
T Consensus 24 Ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 56 (72)
T PRK02793 24 IEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQ 56 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 456677777777777777777777777666553
No 298
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=25.43 E-value=1.4e+02 Score=24.80 Aligned_cols=33 Identities=24% Similarity=0.250 Sum_probs=14.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 171 EKSSEAWSMISKLTEEKTSAMQQNQKLRQELEF 203 (238)
Q Consensus 171 ~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~ 203 (238)
..+..+...|..|.++......-++.|++|+..
T Consensus 123 ~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~ 155 (194)
T PF08614_consen 123 AELAQLEEKIKDLEEELKEKNKANEILQDELQA 155 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444555443
No 299
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=25.38 E-value=5e+02 Score=24.04 Aligned_cols=15 Identities=33% Similarity=0.459 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHH
Q 026478 220 FVLLIGLLGILVGYL 234 (238)
Q Consensus 220 ~v~~v~ll~~llG~~ 234 (238)
.+++.+++|+++|..
T Consensus 399 ~l~~~~~~Gl~lg~~ 413 (444)
T TIGR03017 399 NLVLSIFLGMLLGIG 413 (444)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555556666554
No 300
>PRK01833 tatA twin arginine translocase protein A; Provisional
Probab=25.34 E-value=76 Score=22.64 Aligned_cols=18 Identities=33% Similarity=0.481 Sum_probs=9.8
Q ss_pred CCccHHHHHHHHHHHHHH
Q 026478 214 GGFSTVFVLLIGLLGILV 231 (238)
Q Consensus 214 ~g~~~~~v~~v~ll~~ll 231 (238)
+|+.++.+++++++.+||
T Consensus 2 ~g~g~~elliIl~i~lll 19 (74)
T PRK01833 2 GGISIWQLLIIVAIIVLL 19 (74)
T ss_pred CCccHHHHHHHHHHHHHH
Confidence 356666665555555443
No 301
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=25.28 E-value=1.4e+02 Score=20.42 Aligned_cols=18 Identities=28% Similarity=0.438 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 026478 188 TSAMQQNQKLRQELEFVR 205 (238)
Q Consensus 188 ~~~~~q~~~L~~e~~~l~ 205 (238)
..+.++.+.|+++++.+|
T Consensus 42 ~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 42 RELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 345555667777776665
No 302
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=25.07 E-value=4e+02 Score=26.90 Aligned_cols=14 Identities=43% Similarity=0.693 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHH
Q 026478 220 FVLLIGLLGILVGY 233 (238)
Q Consensus 220 ~v~~v~ll~~llG~ 233 (238)
++++.+++|+++|.
T Consensus 433 ~l~~~~~~gl~lg~ 446 (754)
T TIGR01005 433 IVGLAAVLGLLLGA 446 (754)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444445555544
No 303
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=24.96 E-value=1e+02 Score=28.51 Aligned_cols=32 Identities=28% Similarity=0.320 Sum_probs=15.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 171 EKSSEAWSMISKLTEEKTSAMQQNQKLRQELE 202 (238)
Q Consensus 171 ~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~ 202 (238)
+++.++...+..++.+++.+.++.++.+++++
T Consensus 287 ~~y~~~s~~V~~~t~~L~~IseeLe~vK~eme 318 (359)
T PF10498_consen 287 EKYKQASEGVSERTRELAEISEELEQVKQEME 318 (359)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444
No 304
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=24.91 E-value=1.1e+02 Score=27.08 Aligned_cols=24 Identities=29% Similarity=0.259 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 174 SEAWSMISKLTEEKTSAMQQNQKL 197 (238)
Q Consensus 174 ~e~~~~i~~L~eE~~~~~~q~~~L 197 (238)
.+|.+.|+.|++|+..|+.|..++
T Consensus 118 ~~AlqKIsALEdELs~LRaQIA~I 141 (253)
T PF05308_consen 118 EAALQKISALEDELSRLRAQIAKI 141 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366777888888888888888766
No 305
>PF03168 LEA_2: Late embryogenesis abundant protein; InterPro: IPR004864 Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress [, ]. The function of these proteins is unknown. ; PDB: 3BUT_A 1XO8_A 1YYC_A.
Probab=24.90 E-value=1.7e+02 Score=20.60 Aligned_cols=45 Identities=16% Similarity=0.089 Sum_probs=22.8
Q ss_pred EEEEEcCCCCeEE-----EEEeecCCCcE-EEeCCceeeCCCCEEEEEEEe
Q 026478 27 SMQLTNKTDKFVA-----FKVKTTNPKKY-CVRPNTGIILPRTSCAVTVTM 71 (238)
Q Consensus 27 ~l~L~N~s~~~va-----FKVKTT~p~~Y-~VrP~~G~I~P~~s~~V~V~l 71 (238)
+|+++|++.-.+- |.|.--.-..- ...+..+.++|+++..+.+.+
T Consensus 1 ~l~v~NPN~~~i~~~~~~~~v~~~g~~v~~~~~~~~~~i~~~~~~~v~~~v 51 (101)
T PF03168_consen 1 TLSVRNPNSFGIRYDSIEYDVYYNGQRVGTGGSLPPFTIPARSSTTVPVPV 51 (101)
T ss_dssp EEEEEESSSS-EEEEEEEEEEEESSSEEEEEEECE-EEESSSCEEEEEEEE
T ss_pred CEEEECCCceeEEEeCEEEEEEECCEEEECccccCCeEECCCCcEEEEEEE
Confidence 4677888763322 22332222222 445566677777777666644
No 306
>PF06376 DUF1070: Protein of unknown function (DUF1070); InterPro: IPR009424 This entry represents the arabinogalactan peptide family found in plants [].
Probab=24.89 E-value=86 Score=18.95 Aligned_cols=17 Identities=24% Similarity=0.567 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHhc
Q 026478 220 FVLLIGLLGILVGYLVK 236 (238)
Q Consensus 220 ~v~~v~ll~~llG~~~~ 236 (238)
+..++.++++++.|+++
T Consensus 18 iay~Lm~~Al~~tyl~H 34 (34)
T PF06376_consen 18 IAYMLMLVALVVTYLFH 34 (34)
T ss_pred HHHHHHHHHHHHHhhcC
Confidence 44667778888888875
No 307
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=24.83 E-value=67 Score=30.05 Aligned_cols=20 Identities=25% Similarity=0.607 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHhcC
Q 026478 218 TVFVLLIGLLGILVGYLVKT 237 (238)
Q Consensus 218 ~~~v~~v~ll~~llG~~~~~ 237 (238)
++.++++.++|+++||+|.-
T Consensus 307 ~~~i~~lL~ig~~~gFv~At 326 (387)
T PF12751_consen 307 YLSILLLLVIGFAIGFVFAT 326 (387)
T ss_pred HHHHHHHHHHHHHHHhhhhc
Confidence 34456677899999999864
No 308
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.83 E-value=1.8e+02 Score=25.55 Aligned_cols=39 Identities=18% Similarity=0.193 Sum_probs=19.0
Q ss_pred ccchHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHh
Q 026478 170 KEKSSEAWSMISKLTEEKTSAM----QQNQKLRQELEFVRKEI 208 (238)
Q Consensus 170 ~~k~~e~~~~i~~L~eE~~~~~----~q~~~L~~e~~~l~~~~ 208 (238)
++++.++.+++..|+...++.. .-...++++++.||..+
T Consensus 63 Q~~~~~L~~ev~~~~~~~~s~~~~~~t~~~~ie~~l~~l~~~a 105 (247)
T COG3879 63 QKKVNTLAAEVEDLENKLDSVRRSVLTDDAALEDRLEKLRMLA 105 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHh
Confidence 3444555555555555544444 22334445555565543
No 309
>PF09813 Coiled-coil_56: Coiled-coil domain-containing protein 56; InterPro: IPR018628 Members of this family of proteins have no known function.
Probab=24.82 E-value=3.1e+02 Score=20.71 Aligned_cols=17 Identities=18% Similarity=0.229 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHhc
Q 026478 220 FVLLIGLLGILVGYLVK 236 (238)
Q Consensus 220 ~v~~v~ll~~llG~~~~ 236 (238)
.+..++|.+|++|-|.+
T Consensus 52 ~~Tgl~L~~~v~gIY~Y 68 (100)
T PF09813_consen 52 LLTGLALGAFVVGIYAY 68 (100)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 34456666777776643
No 310
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.81 E-value=2.4e+02 Score=24.28 Aligned_cols=16 Identities=25% Similarity=0.279 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 026478 190 AMQQNQKLRQELEFVR 205 (238)
Q Consensus 190 ~~~q~~~L~~e~~~l~ 205 (238)
|..|+++|+.-.++|+
T Consensus 158 L~~QRe~L~rar~rL~ 173 (220)
T KOG1666|consen 158 LHGQREQLERARERLR 173 (220)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555555554444444
No 311
>TIGR01799 CM_T chorismate mutase domain of T-protein. This model represents the chorismate mutase domain of the gamma proteobacterial "T-protein" which consists of an N-terminal chorismate mutase domain and a C-terminal prephenate dehydrogenase domain.
Probab=24.79 E-value=2.6e+02 Score=19.80 Aligned_cols=33 Identities=9% Similarity=0.046 Sum_probs=24.2
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 168 VPKEKSSEAWSMISKLTEEKTSAMQQNQKLRQE 200 (238)
Q Consensus 168 ~~~~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e 200 (238)
++..+.++.+.+|..|=.+|..+..+.-.++.+
T Consensus 3 ~lR~~ID~ID~~il~Ll~~R~~~~~~ia~~K~~ 35 (83)
T TIGR01799 3 DLRGEIDGVDQELLHLLAKRLELVAQVGKVKHA 35 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345667788888888888888877777777544
No 312
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=24.62 E-value=1.5e+02 Score=22.19 Aligned_cols=33 Identities=18% Similarity=0.217 Sum_probs=17.4
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 169 PKEKSSEAWSMISKLTEEKTSAMQQNQKLRQEL 201 (238)
Q Consensus 169 ~~~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~ 201 (238)
++.+...+...|.+|++....+..+...+++++
T Consensus 72 l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l 104 (110)
T TIGR02338 72 LKEKKETLELRVKTLQRQEERLREQLKELQEKI 104 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555556666555555555555554443
No 313
>PHA03029 hypothetical protein; Provisional
Probab=24.56 E-value=92 Score=22.33 Aligned_cols=17 Identities=29% Similarity=0.944 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHhc
Q 026478 220 FVLLIGLLGILVGYLVK 236 (238)
Q Consensus 220 ~v~~v~ll~~llG~~~~ 236 (238)
++++++++|++-||++.
T Consensus 17 iilila~igiiwg~lls 33 (92)
T PHA03029 17 IILILAIIGIIWGFLLS 33 (92)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45788899999999874
No 314
>PF14962 AIF-MLS: Mitochondria Localisation Sequence; PDB: 1M6I_A.
Probab=24.52 E-value=25 Score=29.39 Aligned_cols=36 Identities=25% Similarity=0.336 Sum_probs=0.0
Q ss_pred HHHHHhccC--CCCCccHHHHHHHHHHHHHHHHHhcCC
Q 026478 203 FVRKEISKS--RAGGFSTVFVLLIGLLGILVGYLVKTT 238 (238)
Q Consensus 203 ~l~~~~~~~--~~~g~~~~~v~~v~ll~~llG~~~~~~ 238 (238)
.+|++.++. ..+|..++++++|++-..--|||.+||
T Consensus 29 ~~R~msS~g~pG~sGsN~~Y~l~vG~t~~gag~YaYkT 66 (180)
T PF14962_consen 29 PLRQMSSSGVPGGSGSNMVYYLVVGVTVSGAGYYAYKT 66 (180)
T ss_dssp --------------------------------------
T ss_pred hhHHHhcCCCCCCCCceEEEEEEECeEEEeeEEEEEEe
Confidence 555555432 235778888888888888899999886
No 315
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=24.42 E-value=1.7e+02 Score=26.56 Aligned_cols=35 Identities=40% Similarity=0.447 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026478 175 EAWSMISKLTEEKTSAMQQNQKLRQELEFVRKEIS 209 (238)
Q Consensus 175 e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~~~~ 209 (238)
++..++.+|+++...+..|.+.+++|+..+++...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 (364)
T TIGR01242 3 ELDVRIRKLEDEKRSLEKEKIRLERELERLRSEIE 37 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567778888888888888888888887777654
No 316
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=24.42 E-value=2.2e+02 Score=23.77 Aligned_cols=33 Identities=24% Similarity=0.307 Sum_probs=18.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 172 KSSEAWSMISKLTEEKTSAMQQNQKLRQELEFV 204 (238)
Q Consensus 172 k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l 204 (238)
.+.++.+.-.-|++++......|+.|.+++..|
T Consensus 75 R~~~L~qvN~lLReQLEq~~~~N~~L~~dl~kl 107 (182)
T PF15035_consen 75 RSEELAQVNALLREQLEQARKANEALQEDLQKL 107 (182)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444446666666666666666665543
No 317
>PRK07857 hypothetical protein; Provisional
Probab=24.29 E-value=2.5e+02 Score=21.42 Aligned_cols=37 Identities=16% Similarity=0.206 Sum_probs=32.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 171 EKSSEAWSMISKLTEEKTSAMQQNQKLRQELEFVRKE 207 (238)
Q Consensus 171 ~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~~ 207 (238)
..+.++.++|..+.+|+-.+..++..+-.+...+++.
T Consensus 28 ~~L~~lR~eID~ID~eIl~LL~eR~~la~eIg~~K~~ 64 (106)
T PRK07857 28 AEIDELREEIDRLDAEILALVKRRTEVSQAIGKARMA 64 (106)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5778999999999999999999999998888887664
No 318
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=24.12 E-value=79 Score=31.34 Aligned_cols=38 Identities=16% Similarity=0.054 Sum_probs=20.9
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 167 EVPKEKSSEAWSMISKLTEEKTSAMQQNQKLRQELEFV 204 (238)
Q Consensus 167 ~~~~~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l 204 (238)
.+++.|-.|++.+|.+++.-..++.+...+-|.|+..|
T Consensus 96 ~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~L 133 (907)
T KOG2264|consen 96 TELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSAL 133 (907)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 35556666777777776554444444444444554443
No 319
>cd04766 HTH_HspR Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=24.10 E-value=1.7e+02 Score=20.97 Aligned_cols=17 Identities=29% Similarity=0.378 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 026478 190 AMQQNQKLRQELEFVRK 206 (238)
Q Consensus 190 ~~~q~~~L~~e~~~l~~ 206 (238)
+.+|.+.|++++..|++
T Consensus 70 l~~~~~~l~~~l~~l~~ 86 (91)
T cd04766 70 LEEELAELRAELDELRA 86 (91)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444455555555544
No 320
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=24.03 E-value=2.4e+02 Score=20.68 Aligned_cols=33 Identities=24% Similarity=0.242 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH
Q 026478 174 SEAWSMISKLTEEKT------SAMQQNQKLRQELEFVRK 206 (238)
Q Consensus 174 ~e~~~~i~~L~eE~~------~~~~q~~~L~~e~~~l~~ 206 (238)
.++..+|.-|+++.. ...-||..|++|+.+++.
T Consensus 27 ~~L~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~rrl~~ 65 (86)
T PF12711_consen 27 EALKEEIQLLREQVEHNPEVTRFAMENIRLREELRRLQS 65 (86)
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777775433 455567777777776654
No 321
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=24.02 E-value=99 Score=23.33 Aligned_cols=24 Identities=21% Similarity=0.498 Sum_probs=19.3
Q ss_pred eeEEEEEEcCCCCeEEEEEeecCC
Q 026478 24 SSCSMQLTNKTDKFVAFKVKTTNP 47 (238)
Q Consensus 24 ~~~~l~L~N~s~~~vaFKVKTT~p 47 (238)
..-+|++.+-...-+-||||.++|
T Consensus 19 ~hi~LKV~gqd~~~~~Fkikr~t~ 42 (99)
T KOG1769|consen 19 EHINLKVKGQDGSVVVFKIKRHTP 42 (99)
T ss_pred ceEEEEEecCCCCEEEEEeecCCh
Confidence 456788888666788999999988
No 322
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=24.00 E-value=3.7e+02 Score=21.29 Aligned_cols=36 Identities=25% Similarity=0.210 Sum_probs=22.5
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 167 EVPKEKSSEAWSMISKLTEEKTSAMQQNQKLRQELE 202 (238)
Q Consensus 167 ~~~~~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~ 202 (238)
.+++.++.++.+++..|+++...+..+.+.+++++.
T Consensus 14 ~~~~~~l~~l~~~~~~l~~~~~r~~ae~en~~~r~~ 49 (165)
T PF01025_consen 14 EELEEELEELEKEIEELKERLLRLQAEFENYRKRLE 49 (165)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667777777777777766655555555544433
No 323
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=23.93 E-value=2.6e+02 Score=21.41 Aligned_cols=28 Identities=14% Similarity=0.277 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 175 EAWSMISKLTEEKTSAMQQNQKLRQELE 202 (238)
Q Consensus 175 e~~~~i~~L~eE~~~~~~q~~~L~~e~~ 202 (238)
++.+....|+.++.+..+....|+.+++
T Consensus 41 ~L~~~l~~L~~q~~s~~qr~~eLqaki~ 68 (107)
T PF09304_consen 41 QLRNALQSLQAQNASRNQRIAELQAKID 68 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444
No 324
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=23.90 E-value=2.4e+02 Score=23.87 Aligned_cols=33 Identities=18% Similarity=0.312 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 175 EAWSMISKLTEEKTSAMQQNQKLRQELEFVRKE 207 (238)
Q Consensus 175 e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~~ 207 (238)
++..+...|+.|+..+..|.+.|+..+..|.++
T Consensus 151 q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q 183 (192)
T PF11180_consen 151 QARQEAQALEAERRAAQAQLRQLQRQVRQLQRQ 183 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555555555443
No 325
>PF11688 DUF3285: Protein of unknown function (DUF3285); InterPro: IPR021702 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=23.73 E-value=1.3e+02 Score=19.14 Aligned_cols=20 Identities=50% Similarity=0.841 Sum_probs=12.6
Q ss_pred CCccHHH--HHHHHHHHHHHHH
Q 026478 214 GGFSTVF--VLLIGLLGILVGY 233 (238)
Q Consensus 214 ~g~~~~~--v~~v~ll~~llG~ 233 (238)
+|-|++| .-.++++||++|.
T Consensus 19 g~~SL~HF~LT~~gll~~lv~l 40 (45)
T PF11688_consen 19 GGTSLFHFGLTAVGLLGFLVGL 40 (45)
T ss_pred cCcchhHHHHHHHHHHHHHHHH
Confidence 4555543 4567888888764
No 326
>KOG4452 consensus Predicted membrane protein [Function unknown]
Probab=23.62 E-value=1.2e+02 Score=21.28 Aligned_cols=27 Identities=15% Similarity=0.298 Sum_probs=17.7
Q ss_pred ccCCCCCccHHHHHHHHHHHHHHHHHh
Q 026478 209 SKSRAGGFSTVFVLLIGLLGILVGYLV 235 (238)
Q Consensus 209 ~~~~~~g~~~~~v~~v~ll~~llG~~~ 235 (238)
++-+..-||.+...++++=-|+.+||+
T Consensus 11 sPVNpAvfPhLttvLl~iG~fftAwFf 37 (79)
T KOG4452|consen 11 SPVNPAVFPHLTTVLLGIGLFFTAWFF 37 (79)
T ss_pred CCCChhHhHHHHHHHHHHHHHHHHHHH
Confidence 333445677777767777667777775
No 327
>PRK11876 petM cytochrome b6-f complex subunit PetM; Reviewed
Probab=23.59 E-value=1.1e+02 Score=18.22 Aligned_cols=16 Identities=19% Similarity=0.252 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHhcC
Q 026478 222 LLIGLLGILVGYLVKT 237 (238)
Q Consensus 222 ~~v~ll~~llG~~~~~ 237 (238)
..+.++|+.+||++-|
T Consensus 13 ~~LvlvGlalGf~LLk 28 (32)
T PRK11876 13 WVLIPVGLAGGALLLK 28 (32)
T ss_pred HHHHHHHHHHHHHhee
Confidence 4566778889988754
No 328
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=23.56 E-value=2.5e+02 Score=21.28 Aligned_cols=34 Identities=18% Similarity=0.073 Sum_probs=27.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 171 EKSSEAWSMISKLTEEKTSAMQQNQKLRQELEFV 204 (238)
Q Consensus 171 ~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l 204 (238)
..+.++.+++-.|.=-.+.|.+....||+|++..
T Consensus 40 ~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~~ 73 (102)
T PF10205_consen 40 QALRKLEQENDSLTFRNQQLTKRVEVLQEELEES 73 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567888888888887788888888888888854
No 329
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=23.44 E-value=1.6e+02 Score=22.02 Aligned_cols=24 Identities=25% Similarity=0.220 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 174 SEAWSMISKLTEEKTSAMQQNQKL 197 (238)
Q Consensus 174 ~e~~~~i~~L~eE~~~~~~q~~~L 197 (238)
..+...+.+|+++...+..+...+
T Consensus 87 ~~l~~~~~~l~~~~~~~~~~~~~~ 110 (120)
T PF02996_consen 87 KELEEQLEKLEKELAELQAQIEQL 110 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444433333333333333
No 330
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=23.41 E-value=1.4e+02 Score=27.22 Aligned_cols=41 Identities=20% Similarity=0.295 Sum_probs=28.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 026478 171 EKSSEAWSMISKLTEEKTSAMQQNQKLRQELEFVRKEISKS 211 (238)
Q Consensus 171 ~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~~~~~~ 211 (238)
.-+.+...+..+|+.|...+++....++.+...||.+..+.
T Consensus 72 ~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~ 112 (319)
T PF09789_consen 72 QLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQ 112 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhh
Confidence 34456677777777777777777777777777787765543
No 331
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=23.35 E-value=1.3e+02 Score=17.24 Aligned_cols=17 Identities=35% Similarity=0.643 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 026478 219 VFVLLIGLLGILVGYLVK 236 (238)
Q Consensus 219 ~~v~~v~ll~~llG~~~~ 236 (238)
+.++.++++++ .++++.
T Consensus 13 ~~~~G~~l~~~-~~~~~~ 29 (34)
T TIGR01167 13 LLLLGLLLLGL-GGLLLR 29 (34)
T ss_pred HHHHHHHHHHH-HHHHhe
Confidence 33344444444 555544
No 332
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=23.31 E-value=1.4e+02 Score=28.85 Aligned_cols=41 Identities=10% Similarity=0.016 Sum_probs=26.5
Q ss_pred cccccchHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 167 EVPKEKSSEAWSM-------ISKLTEEKTSAMQQNQKLRQELEFVRKE 207 (238)
Q Consensus 167 ~~~~~k~~e~~~~-------i~~L~eE~~~~~~q~~~L~~e~~~l~~~ 207 (238)
.+|+.+++++..+ ...+++.++.+..+++.|+++++.++.+
T Consensus 79 sELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~~~ 126 (475)
T PRK13729 79 AQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALGAN 126 (475)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 4566666655533 3355666667888888888887655543
No 333
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=23.28 E-value=74 Score=30.79 Aligned_cols=26 Identities=19% Similarity=0.253 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 179 MISKLTEEKTSAMQQNQKLRQELEFV 204 (238)
Q Consensus 179 ~i~~L~eE~~~~~~q~~~L~~e~~~l 204 (238)
+|..|+.|+++|.+|...+++.++..
T Consensus 32 kie~L~kql~~Lk~q~~~l~~~v~k~ 57 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQDDLNDRVDKV 57 (489)
T ss_pred HHHHHHHHHHHHHHhhcccccccchh
Confidence 55555555555555554444444433
No 334
>PF11027 DUF2615: Protein of unknown function (DUF2615); InterPro: IPR020309 This entry represents a group of uncharacterised protein from the Metazoa, including CD034 (or C4orf34) and YQF4 (or C34C12.4).
Probab=23.12 E-value=1.2e+02 Score=22.95 Aligned_cols=23 Identities=22% Similarity=0.488 Sum_probs=13.9
Q ss_pred CCccHHHHHHHHHHHHHHHHHhc
Q 026478 214 GGFSTVFVLLIGLLGILVGYLVK 236 (238)
Q Consensus 214 ~g~~~~~v~~v~ll~~llG~~~~ 236 (238)
+|.+.++++++.++-.++-|+++
T Consensus 51 ~~~~~~~~~~~w~~~A~~ly~~R 73 (103)
T PF11027_consen 51 GGNSMFMMMMLWMVLAMALYLLR 73 (103)
T ss_pred CCccHHHHHHHHHHHHHHHHHcC
Confidence 45666666666666566666654
No 335
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=23.03 E-value=71 Score=28.52 Aligned_cols=20 Identities=30% Similarity=0.595 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHhcC
Q 026478 218 TVFVLLIGLLGILVGYLVKT 237 (238)
Q Consensus 218 ~~~v~~v~ll~~llG~~~~~ 237 (238)
+-.+++++|+|+|+.|++++
T Consensus 238 LG~v~ll~l~Gii~~~~~r~ 257 (281)
T PF12768_consen 238 LGTVFLLVLIGIILAYIRRR 257 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 44578899999999999887
No 336
>smart00605 CW CW domain.
Probab=22.96 E-value=1.1e+02 Score=22.18 Aligned_cols=22 Identities=36% Similarity=0.517 Sum_probs=14.0
Q ss_pred EEEEEcC-CCCeEEEEEeecCCC
Q 026478 27 SMQLTNK-TDKFVAFKVKTTNPK 48 (238)
Q Consensus 27 ~l~L~N~-s~~~vaFKVKTT~p~ 48 (238)
.++-.+. +...||||+.++.+.
T Consensus 58 ~v~~~~~~~~~~VAfK~~~~~~~ 80 (94)
T smart00605 58 TVKKLSSSSGKKVAFKVSTDQPS 80 (94)
T ss_pred EEEEccCCCCcEEEEEEeCCCCC
Confidence 3444444 458899999866543
No 337
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=22.96 E-value=2.4e+02 Score=23.90 Aligned_cols=20 Identities=30% Similarity=0.338 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 026478 186 EKTSAMQQNQKLRQELEFVR 205 (238)
Q Consensus 186 E~~~~~~q~~~L~~e~~~l~ 205 (238)
|+..|++-|++|++|...||
T Consensus 56 EIR~LKe~NqkLqedNqELR 75 (195)
T PF10226_consen 56 EIRGLKEVNQKLQEDNQELR 75 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444555554444443
No 338
>PF04888 SseC: Secretion system effector C (SseC) like family ; InterPro: IPR006972 SseC is a secreted protein that forms a complex together with SecB and SecD on the surface of Salmonella typhimurium. All these proteins are secreted by the type III secretion system []. Many mucosal pathogens use type III secretion systems for the injection of effector proteins into target cells. SecB, SseC and SecD are inserted into the target cell membrane. where they form a small pore or translocon [, ]. In addition to SseC, this family includes the bacterial secreted proteins PopB, PepB, YopB and EspD which are thought to be directly involved in pore formation, and type III secretion system translocon.; GO: 0009405 pathogenesis
Probab=22.94 E-value=3.6e+02 Score=23.87 Aligned_cols=11 Identities=18% Similarity=0.280 Sum_probs=4.9
Q ss_pred HHHHHHHHHHH
Q 026478 193 QNQKLRQELEF 203 (238)
Q Consensus 193 q~~~L~~e~~~ 203 (238)
+.++.++|++.
T Consensus 34 ~~~e~~~~~~e 44 (306)
T PF04888_consen 34 KAEEKAEEIEE 44 (306)
T ss_pred HHHHHHHHHHH
Confidence 33444445443
No 339
>PF07225 NDUF_B4: NADH-ubiquinone oxidoreductase B15 subunit (NDUFB4); InterPro: IPR009866 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This family contains human NADH-ubiquinone oxidoreductase subunit NDUFB4 and related sequences.; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0005739 mitochondrion
Probab=22.90 E-value=3.6e+02 Score=21.18 Aligned_cols=15 Identities=20% Similarity=0.011 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHhc
Q 026478 222 LLIGLLGILVGYLVK 236 (238)
Q Consensus 222 ~~v~ll~~llG~~~~ 236 (238)
+.+++..++.+|+++
T Consensus 88 ~~~v~P~i~~~~~~K 102 (125)
T PF07225_consen 88 GFGVVPLIFYYYVLK 102 (125)
T ss_pred HHHHHHHHHHHhhhc
Confidence 333444455555554
No 340
>COG5570 Uncharacterized small protein [Function unknown]
Probab=22.89 E-value=62 Score=21.54 Aligned_cols=18 Identities=17% Similarity=0.403 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 026478 189 SAMQQNQKLRQELEFVRK 206 (238)
Q Consensus 189 ~~~~q~~~L~~e~~~l~~ 206 (238)
++.+..-.|++|.+.|+.
T Consensus 37 eLKRrKL~lKeeIEkLka 54 (57)
T COG5570 37 ELKRRKLRLKEEIEKLKA 54 (57)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 344445556677666654
No 341
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=22.89 E-value=57 Score=23.92 Aligned_cols=22 Identities=27% Similarity=0.548 Sum_probs=14.8
Q ss_pred EEEEeecCCC--cEEEeCCceeeC
Q 026478 39 AFKVKTTNPK--KYCVRPNTGIIL 60 (238)
Q Consensus 39 aFKVKTT~p~--~Y~VrP~~G~I~ 60 (238)
+||+|+.+.+ ||.+.|+.|+-+
T Consensus 2 ~FK~~~~~GrvhRf~~~~s~~~~~ 25 (86)
T cd06409 2 AFKFKDPKGRVHRFRLRPSESLEE 25 (86)
T ss_pred cEEeeCCCCCEEEEEecCCCCHHH
Confidence 6899876554 566667777543
No 342
>PF11668 Gp_UL130: HCMV glycoprotein pUL130; InterPro: IPR021038 This entry represents UL130 from Human cytomegalovirus, a glycoprotein secreted from infected cells that is incorporated into the virion envelope as a Golgi-matured form. The protein promotes endothelial cell infection through a producer cell modification of the virion [].
Probab=22.87 E-value=2e+02 Score=23.35 Aligned_cols=43 Identities=23% Similarity=0.583 Sum_probs=28.7
Q ss_pred eeecccC-CCceeEEEEEEcC---CCCeEEEEEee------cCCCcEEEeCCc
Q 026478 14 LKFPFEL-KKQSSCSMQLTNK---TDKFVAFKVKT------TNPKKYCVRPNT 56 (238)
Q Consensus 14 L~F~~~~-~~~~~~~l~L~N~---s~~~vaFKVKT------T~p~~Y~VrP~~ 56 (238)
|+|.... .+-..|.++|.-- ....|+|++|= ..+.-+|++||.
T Consensus 102 Lry~vkDG~~~~~C~m~v~TwA~~~~~~i~Fq~kiel~~A~~~~stiCthPnl 154 (156)
T PF11668_consen 102 LRYRVKDGTRWEMCIMRVQTWAHTKSNYIQFQVKIELTHAYRQPSTICTHPNL 154 (156)
T ss_pred EEEEeccCCceeeEEEEeeehhhhhcccEEEEEEEEEeeccCCccceeccccc
Confidence 5665433 3567899998752 24569999872 335678999974
No 343
>PF08277 PAN_3: PAN-like domain; InterPro: IPR006583 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions []. These domains contain a hair-pin loop like structure, similar to knottins, but the pattern of disulphide bonds differs The PAN-3 or CW is a domain associated with a number of Caenorhabditis elegans hypothetical proteins.
Probab=22.85 E-value=1e+02 Score=20.70 Aligned_cols=19 Identities=26% Similarity=0.305 Sum_probs=12.8
Q ss_pred eeEEEEEEcCCCCeEEEEE
Q 026478 24 SSCSMQLTNKTDKFVAFKV 42 (238)
Q Consensus 24 ~~~~l~L~N~s~~~vaFKV 42 (238)
+...-++...+...||||+
T Consensus 53 i~~v~~~~~~~~~~VA~K~ 71 (71)
T PF08277_consen 53 ISTVQKTDSSSGNKVAFKI 71 (71)
T ss_pred EEEEEEeecCCCeEEEEEC
Confidence 4444455556678999996
No 344
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=22.83 E-value=1.8e+02 Score=21.86 Aligned_cols=28 Identities=18% Similarity=0.162 Sum_probs=11.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 172 KSSEAWSMISKLTEEKTSAMQQNQKLRQ 199 (238)
Q Consensus 172 k~~e~~~~i~~L~eE~~~~~~q~~~L~~ 199 (238)
+...+...+.+|+++...+.++...++.
T Consensus 95 r~~~l~~~~~~l~~~~~~~~~~~~~l~~ 122 (129)
T cd00890 95 RLETLEKQIEKLEKQLEKLQDQITELQE 122 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444433
No 345
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=22.78 E-value=1.7e+02 Score=24.90 Aligned_cols=35 Identities=17% Similarity=0.179 Sum_probs=18.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 172 KSSEAWSMISKLTEEKTSAMQQNQKLRQELEFVRK 206 (238)
Q Consensus 172 k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~ 206 (238)
|..++......|+.+...+..++..|+.|...|+.
T Consensus 106 K~kqlE~d~~~Lk~~~~~l~~~~~~Lq~e~~eL~~ 140 (198)
T KOG0483|consen 106 KTKQLEKDYESLKRQLESLRSENDRLQSEVQELVA 140 (198)
T ss_pred cchhhhhhHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 34444455555555555555555555555554443
No 346
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=22.72 E-value=87 Score=28.81 Aligned_cols=24 Identities=29% Similarity=0.320 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 181 SKLTEEKTSAMQQNQKLRQELEFV 204 (238)
Q Consensus 181 ~~L~eE~~~~~~q~~~L~~e~~~l 204 (238)
..|++|..+|++||+.|+.|+.+|
T Consensus 35 ~aLr~EN~~LKkEN~~Lk~eVerL 58 (420)
T PF07407_consen 35 FALRMENHSLKKENNDLKIEVERL 58 (420)
T ss_pred hhHHHHhHHHHHHHHHHHHHHHHH
Confidence 345555555555565555555544
No 347
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=22.62 E-value=1.9e+02 Score=24.99 Aligned_cols=26 Identities=15% Similarity=0.125 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 182 KLTEEKTSAMQQNQKLRQELEFVRKE 207 (238)
Q Consensus 182 ~L~eE~~~~~~q~~~L~~e~~~l~~~ 207 (238)
++.+-+..+++|...||.|...+++.
T Consensus 7 ~~~d~L~iLkeef~aLQke~~E~~kk 32 (280)
T KOG4591|consen 7 KKEDHLDILKEEFNALQKEHAELEKK 32 (280)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556666778888888877765
No 348
>PF08781 DP: Transcription factor DP; InterPro: IPR014889 DP forms a heterodimer with E2F and regulates genes involved in cell cycle progression. The transcriptional activity of E2F is inhibited by the retinoblastoma protein which binds to the E2F-DP heterodimer [] and negatively regulates the G1-S transition. ; PDB: 2AZE_A.
Probab=22.55 E-value=2.3e+02 Score=22.82 Aligned_cols=6 Identities=33% Similarity=0.650 Sum_probs=2.2
Q ss_pred CccHHH
Q 026478 215 GFSTVF 220 (238)
Q Consensus 215 g~~~~~ 220 (238)
|+++.|
T Consensus 54 ~i~LPF 59 (142)
T PF08781_consen 54 GIQLPF 59 (142)
T ss_dssp EEESS-
T ss_pred eeecCE
Confidence 444433
No 349
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=22.53 E-value=2.8e+02 Score=21.51 Aligned_cols=30 Identities=37% Similarity=0.430 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 173 SSEAWSMISKLTEEKTSAMQQNQKLRQELE 202 (238)
Q Consensus 173 ~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~ 202 (238)
++.+..++..+.++...+..+...+++++.
T Consensus 5 ~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~ 34 (132)
T PF07926_consen 5 LSSLQSELQRLKEQEEDAEEQLQSLREDLE 34 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444
No 350
>PRK00846 hypothetical protein; Provisional
Probab=22.44 E-value=2.7e+02 Score=19.96 Aligned_cols=33 Identities=15% Similarity=0.103 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 173 SSEAWSMISKLTEEKTSAMQQNQKLRQELEFVR 205 (238)
Q Consensus 173 ~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~ 205 (238)
+.+++..+.+.+.+...+.++.+.|.+.+..+.
T Consensus 29 Ie~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 29 LTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 346677777777777777777777777666554
No 351
>PHA02657 hypothetical protein; Provisional
Probab=22.37 E-value=99 Score=22.73 Aligned_cols=18 Identities=33% Similarity=0.680 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 026478 219 VFVLLIGLLGILVGYLVK 236 (238)
Q Consensus 219 ~~v~~v~ll~~llG~~~~ 236 (238)
.+++.+|++.|+|=|+.+
T Consensus 32 vfv~vI~il~flLLYLvk 49 (95)
T PHA02657 32 IFIFVVCILIYLLIYLVD 49 (95)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 467788899999988864
No 352
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=22.29 E-value=1.5e+02 Score=30.03 Aligned_cols=37 Identities=27% Similarity=0.285 Sum_probs=23.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 171 EKSSEAWSMISKLTEEKTSAMQQNQKLRQELEFVRKE 207 (238)
Q Consensus 171 ~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~~ 207 (238)
.+-++++.++.+|+.|+....++...+++|+..||+.
T Consensus 545 ~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~ 581 (697)
T PF09726_consen 545 QRRRQLESELKKLRRELKQKEEQIRELESELQELRKY 581 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566667777777666666666676666666653
No 353
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=22.27 E-value=2.1e+02 Score=23.26 Aligned_cols=30 Identities=23% Similarity=0.277 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 175 EAWSMISKLTEEKTSAMQQNQKLRQELEFV 204 (238)
Q Consensus 175 e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l 204 (238)
+....+.+++++...+..++.+++.+...|
T Consensus 102 ~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l 131 (177)
T PF13870_consen 102 DREEELAKLREELYRVKKERDKLRKQNKKL 131 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333334443333333
No 354
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=22.25 E-value=1.7e+02 Score=25.28 Aligned_cols=33 Identities=18% Similarity=0.036 Sum_probs=13.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 171 EKSSEAWSMISKLTEEKTSAMQQNQKLRQELEF 203 (238)
Q Consensus 171 ~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~ 203 (238)
.++..+..++..|+..++.+.++...++++++.
T Consensus 56 ~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~ 88 (251)
T PF11932_consen 56 AEYRQLEREIENLEVYNEQLERQVASQEQELAS 88 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444443333333333333
No 355
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=22.25 E-value=1.6e+02 Score=26.84 Aligned_cols=33 Identities=24% Similarity=0.348 Sum_probs=18.6
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 170 KEKSSEAWSMISKLTEEKTSAMQQNQKLRQELE 202 (238)
Q Consensus 170 ~~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~ 202 (238)
+.++.++.+.+..|+.+.....++...|+++..
T Consensus 241 ~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~ 273 (344)
T PF12777_consen 241 QAELAELEEKLAALQKEYEEAQKEKQELEEEIE 273 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555556666665555
No 356
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=22.21 E-value=1.7e+02 Score=28.14 Aligned_cols=32 Identities=19% Similarity=0.236 Sum_probs=22.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 171 EKSSEAWSMISKLTEEKTSAMQQNQKLRQELE 202 (238)
Q Consensus 171 ~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~ 202 (238)
.++.+++..+.++++|++..+++|+.|++...
T Consensus 382 ~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~ 413 (493)
T KOG0804|consen 382 RKLQQLQTKLKKCQKELKEEREENKKLIKNQD 413 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 45666777777777787777777777765544
No 357
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=22.09 E-value=5.2e+02 Score=22.36 Aligned_cols=64 Identities=17% Similarity=0.107 Sum_probs=29.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH--hcc---CCCCCccHHHHHHHHHHHHHHHHH
Q 026478 171 EKSSEAWSMISKLTEEKTSAMQQNQKLRQELEF--VRKE--ISK---SRAGGFSTVFVLLIGLLGILVGYL 234 (238)
Q Consensus 171 ~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~--l~~~--~~~---~~~~g~~~~~v~~v~ll~~llG~~ 234 (238)
+.++++..+|.+++--...++.+..+++-.+.. |.-. +-+ -.-.||.-.++|.+.|+|.+--|+
T Consensus 15 ~~L~rle~qi~q~~~~~~~~qs~l~~~~~r~tv~slAl~~l~~S~iy~~~~~y~~~~~It~~llgs~slym 85 (251)
T COG5415 15 ADLSRLESQIHQLDVALKKSQSILSQWQSRLTVYSLALTVLALSYIYWEYHGYRPYLVITALLLGSGSLYM 85 (251)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccccchhHHHHHHHHhhhHHHH
Confidence 455566666666555444444444444433221 0000 001 112477777777777777333333
No 358
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=22.03 E-value=1.9e+02 Score=26.11 Aligned_cols=25 Identities=28% Similarity=0.454 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 181 SKLTEEKTSAMQQNQKLRQELEFVR 205 (238)
Q Consensus 181 ~~L~eE~~~~~~q~~~L~~e~~~l~ 205 (238)
..|+++...+++||+.|++|.+.++
T Consensus 35 ~~l~~~~~~lr~e~~~l~~~~~~~~ 59 (308)
T PF11382_consen 35 DSLEDQFDSLREENDELRAELDALQ 59 (308)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444443
No 359
>PRK00736 hypothetical protein; Provisional
Probab=21.95 E-value=2.8e+02 Score=19.15 Aligned_cols=33 Identities=6% Similarity=-0.010 Sum_probs=24.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 172 KSSEAWSMISKLTEEKTSAMQQNQKLRQELEFV 204 (238)
Q Consensus 172 k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l 204 (238)
-+.+++..|.+-+.++..+.++.+.|.+.+..+
T Consensus 20 tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00736 20 TIEELSDQLAEQWKTVEQMRKKLDALTERFLSL 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345777777777777788888888887766654
No 360
>PF10342 GPI-anchored: Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family; InterPro: IPR018466 This entry represents glycoproteins involved in cell wall (1-->6)-beta-glucan assembly. In yeast a null mutation leads to severe growth defects, aberrant multi-budded morphology, and mating defects [, ]. The entry includes DRMIP and Hesp-379, which are involved in both fruiting body formation and in host attack respectively. Hesp-379 is a haustorially expressed secreted protein; the haustorium being the small sucker that penetrates host tissue [].
Probab=21.91 E-value=2.9e+02 Score=19.26 Aligned_cols=59 Identities=7% Similarity=0.129 Sum_probs=38.0
Q ss_pred CCeeeecccCCCceeEEEEEEcCCC--CeEEEEEee---cCCCcEEEeCCceeeCCCCEEEEEEE
Q 026478 11 PSELKFPFELKKQSSCSMQLTNKTD--KFVAFKVKT---TNPKKYCVRPNTGIILPRTSCAVTVT 70 (238)
Q Consensus 11 P~eL~F~~~~~~~~~~~l~L~N~s~--~~vaFKVKT---T~p~~Y~VrP~~G~I~P~~s~~V~V~ 70 (238)
|-.+.+...........|.|.|-.. -.....|.+ ++.+.|.+.++.+ |.++....|.|.
T Consensus 14 ~~~I~W~~~~~~~~~~~I~L~~g~~~~~~~~~~ia~~v~~~~gs~~~~~p~~-l~~~~~Y~i~~~ 77 (93)
T PF10342_consen 14 PITITWTSDGTDPGNVTIYLCNGNNTNLNFVQTIASNVSNSDGSYTWTIPSD-LPSGGDYFIQIV 77 (93)
T ss_pred cEEEEEeCCCCCCcEEEEEEEcCCCCCcceeEEEEecccCCCCEEEEEcCCC-CCCCCcEEEEEE
Confidence 3467776654456778999998765 222344432 2237888888776 666667777777
No 361
>PRK10722 hypothetical protein; Provisional
Probab=21.88 E-value=2.4e+02 Score=24.76 Aligned_cols=34 Identities=29% Similarity=0.395 Sum_probs=22.6
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHh
Q 026478 175 EAWSMISKL----TEEKTSAMQQNQKLRQELEFVRKEI 208 (238)
Q Consensus 175 e~~~~i~~L----~eE~~~~~~q~~~L~~e~~~l~~~~ 208 (238)
+...--++| ..++..+++|+.+|+.+++...++.
T Consensus 162 eEr~Ry~rLQq~sD~qlD~lrqq~~~Lq~~L~~t~rKL 199 (247)
T PRK10722 162 EERQRYQKLQQSSDSELDALRQQQQRLQYQLELTTRKL 199 (247)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334466 5667778888888888888766554
No 362
>PRK13673 hypothetical protein; Provisional
Probab=21.75 E-value=1.7e+02 Score=22.79 Aligned_cols=35 Identities=29% Similarity=0.673 Sum_probs=18.0
Q ss_pred HHHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHh
Q 026478 199 QELEFVRKEISKSRAGGFSTVFVLLIGLLGILVGYLV 235 (238)
Q Consensus 199 ~e~~~l~~~~~~~~~~g~~~~~v~~v~ll~~llG~~~ 235 (238)
-|+...|++.+++ .+++...+++ ++++-+++||.+
T Consensus 77 mEm~l~r~kk~k~-~~~~~~~~ii-~lvlti~lG~~L 111 (118)
T PRK13673 77 MEMSLAKRKKGKP-TGGFWWIFII-VLVLTILLGLIL 111 (118)
T ss_pred HHHHHHHHHcCCC-cccHHHHHHH-HHHHHHHHHHHh
Confidence 3444555544332 3566555543 345556777643
No 363
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=21.69 E-value=1.9e+02 Score=25.07 Aligned_cols=20 Identities=10% Similarity=0.071 Sum_probs=7.5
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 026478 173 SSEAWSMISKLTEEKTSAMQ 192 (238)
Q Consensus 173 ~~e~~~~i~~L~eE~~~~~~ 192 (238)
+..+...+.+++++....++
T Consensus 72 ~~~l~~~i~~~~~~i~~~r~ 91 (302)
T PF10186_consen 72 LERLRERIERLRKRIEQKRE 91 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 364
>PRK15249 fimbrial chaperone protein StbB; Provisional
Probab=21.67 E-value=2e+02 Score=25.10 Aligned_cols=42 Identities=12% Similarity=0.137 Sum_probs=28.9
Q ss_pred EEEEEcCCCCeEEEE-EeecCCCcEEEeCCceeeCCCCEEEEEE
Q 026478 27 SMQLTNKTDKFVAFK-VKTTNPKKYCVRPNTGIILPRTSCAVTV 69 (238)
Q Consensus 27 ~l~L~N~s~~~vaFK-VKTT~p~~Y~VrP~~G~I~P~~s~~V~V 69 (238)
.|+++|+|..++.|- ++....+ -.+....|+|.|+++..+.+
T Consensus 177 ~l~v~Nptpyyitl~~l~~~~~~-~~~~~~~~mv~P~s~~~~~l 219 (253)
T PRK15249 177 GIVIVNPQPWFASLSNLNVKVNG-ASYNLDADMIAPFSSQTWWL 219 (253)
T ss_pred EEEEECCCceEEEeeeeeeccCC-eecCCCCceECCCCccEEEc
Confidence 499999999998876 3322222 12223458999999998875
No 365
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=21.65 E-value=2.1e+02 Score=22.36 Aligned_cols=28 Identities=14% Similarity=0.253 Sum_probs=19.5
Q ss_pred CCCcEEEeC--CceeeCCCCEEEEEEEecc
Q 026478 46 NPKKYCVRP--NTGIILPRTSCAVTVTMQA 73 (238)
Q Consensus 46 ~p~~Y~VrP--~~G~I~P~~s~~V~V~lq~ 73 (238)
.|..|...+ +..-|.||+++.+.+.+..
T Consensus 107 ~P~~yl~~~~~~~~~l~pg~~~~~~~~~~~ 136 (149)
T PF11906_consen 107 TPADYLPPGLAAQAGLPPGESVPFRLRLED 136 (149)
T ss_pred ChHHhcccccccccccCCCCeEEEEEEeeC
Confidence 355555544 2445999999999998863
No 366
>PF08402 TOBE_2: TOBE domain; InterPro: IPR013611 The TOBE domain [] (Transport-associated OB) always occurs as a dimer as the C-terminal strand of each domain is supplied by the partner. Probably involved in the recognition of small ligands such as molybdenum (e.g. P46930 from SWISSPROT) and sulphate (P16676 from SWISSPROT). Found in ABC transporters immediately after the ATPase domain. A strong RPE motif is found at the presumed N terminus of the domain. ; GO: 0005215 transporter activity, 0005524 ATP binding, 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0006810 transport, 0043190 ATP-binding cassette (ABC) transporter complex; PDB: 1Q12_A 1Q1B_C 2AWN_D 3RLF_B 3PUX_B 2R6G_B 3PUV_B 1Q1E_A 3PV0_B 2AWO_A ....
Probab=21.64 E-value=2.4e+02 Score=18.36 Aligned_cols=65 Identities=14% Similarity=0.237 Sum_probs=40.1
Q ss_pred eEEeCCeeeecccCCCceeEEEEEEcCCCCeEEEEEeecCCCcEEEe-CCce---eeCCCCEEEEEEEe
Q 026478 7 VNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVR-PNTG---IILPRTSCAVTVTM 71 (238)
Q Consensus 7 L~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~Vr-P~~G---~I~P~~s~~V~V~l 71 (238)
|.|-|..+.+.........+++.-.--.....-+.+.+..-....+. ++.. .+.+|+.+.+.+..
T Consensus 1 l~iRPE~i~l~~~~~~~~~g~V~~~~~~G~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~G~~v~l~~~~ 69 (75)
T PF08402_consen 1 LGIRPEDIRLSPEGENRLPGTVVSVEFLGSETRYTVRLEGGEELVVRVPNSQRDSPLEPGDEVRLSWDP 69 (75)
T ss_dssp EEE-GGGEEEESSTTTEEEEEEEEEEEESSEEEEEEEETTSSEEEEEEESSG-TTT--TTSEEEEEEEG
T ss_pred CEECcceeEEECCCCCeEEEEEEEEEECCCEEEEEEEECCCCEEEEEecCccccCCCCCCCEEEEEECc
Confidence 46778877774222235666666555567778888888777664444 4444 68899988887754
No 367
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.63 E-value=2.1e+02 Score=24.38 Aligned_cols=23 Identities=13% Similarity=0.126 Sum_probs=18.3
Q ss_pred cccccchHHHHHHHHHHHHHHHH
Q 026478 167 EVPKEKSSEAWSMISKLTEEKTS 189 (238)
Q Consensus 167 ~~~~~k~~e~~~~i~~L~eE~~~ 189 (238)
+.++.|.+++.+++.+++++++.
T Consensus 29 dSve~KIskLDaeL~k~~~Qi~k 51 (218)
T KOG1655|consen 29 DSVEKKISKLDAELCKYKDQIKK 51 (218)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHh
Confidence 34667888999999999888774
No 368
>PF11598 COMP: Cartilage oligomeric matrix protein; InterPro: IPR024665 Thrombospondins are adhesive glycoproteins that mediate cell-to-cell and cell-to-matrix interactions. Cartilage oligomeric matrix protein may play a role in the structural integrity of cartilage via its interaction with other extracellular matrix proteins such as collagen and fibronectin [, ]. Thrombospondin 3 and 4 and cartilage oligomeric matrix proteins contain a five-stranded coiled-coil domain represented by this entry. This domain has a binding site between two internal rings formed by Leu37 and Thr40 [].; PDB: 1MZ9_D 1FBM_A 1VDF_E.
Probab=21.57 E-value=2.3e+02 Score=18.14 Aligned_cols=19 Identities=26% Similarity=0.207 Sum_probs=9.4
Q ss_pred chHHHHHHHHHHHHHHHHH
Q 026478 172 KSSEAWSMISKLTEEKTSA 190 (238)
Q Consensus 172 k~~e~~~~i~~L~eE~~~~ 190 (238)
++.++.+.+..|+++.++-
T Consensus 9 ql~~l~~~l~elk~~l~~Q 27 (45)
T PF11598_consen 9 QLSELNQMLQELKELLRQQ 27 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555555555544433
No 369
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=21.38 E-value=2.2e+02 Score=24.76 Aligned_cols=39 Identities=28% Similarity=0.357 Sum_probs=31.1
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 168 VPKEKSSEAWSMISKLTEEKTSAMQQNQKLRQELEFVRK 206 (238)
Q Consensus 168 ~~~~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~ 206 (238)
.|..++.++...|.+|.++...-..+...|++++...|.
T Consensus 79 ~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~ 117 (246)
T PF00769_consen 79 QLEQELREAEAEIARLEEESERKEEEAEELQEELEEARE 117 (246)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788999999999999988888888888888775543
No 370
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=21.36 E-value=2.6e+02 Score=22.72 Aligned_cols=14 Identities=29% Similarity=0.347 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHh
Q 026478 222 LLIGLLGILVGYLV 235 (238)
Q Consensus 222 ~~v~ll~~llG~~~ 235 (238)
+..++.+..++++|
T Consensus 108 l~~~l~~~~fa~lf 121 (193)
T PF06738_consen 108 LAAGLASAAFALLF 121 (193)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444443
No 371
>PRK07248 hypothetical protein; Provisional
Probab=21.28 E-value=1.5e+02 Score=21.27 Aligned_cols=34 Identities=12% Similarity=0.155 Sum_probs=24.6
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 167 EVPKEKSSEAWSMISKLTEEKTSAMQQNQKLRQE 200 (238)
Q Consensus 167 ~~~~~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e 200 (238)
+++..+.++.+.+|..|=.+|..+.++.-.++.+
T Consensus 4 ~~lR~~ID~iD~~i~~Ll~~R~~l~~~I~~~K~~ 37 (87)
T PRK07248 4 EEIRQEIDQIDDQLVALLEKRMALVEQVVAYKKA 37 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677788888888888888777777776554
No 372
>TIGR01807 CM_P2 chorismate mutase domain of proteobacterial P-protein, clade 2. This model represents one of two separate clades of the chorismate mutase domain of the gamma and beta and epsilon proteobacterial "P-protein" which contains an N-terminal chorismate mutase domain and a C-terminal prephenate dehydratase domain. It is also found in Aquifex aolicus.
Probab=21.13 E-value=1.5e+02 Score=20.61 Aligned_cols=33 Identities=18% Similarity=0.116 Sum_probs=24.8
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 168 VPKEKSSEAWSMISKLTEEKTSAMQQNQKLRQE 200 (238)
Q Consensus 168 ~~~~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e 200 (238)
++..+.++.+.+|..|=.||..+.++.-.++.+
T Consensus 3 ~lR~~ID~iD~~iv~Ll~~R~~~~~~i~~~K~~ 35 (76)
T TIGR01807 3 ELRNKIDAIDDRILDLLSERATYAQAVGELKGS 35 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355677788888888888888877777777665
No 373
>PRK14146 heat shock protein GrpE; Provisional
Probab=21.12 E-value=2.3e+02 Score=24.26 Aligned_cols=32 Identities=13% Similarity=0.119 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 176 AWSMISKLTEEKTSAMQQNQKLRQELEFVRKE 207 (238)
Q Consensus 176 ~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~~ 207 (238)
+.+++..|+++...+..+...++.+.+.+|+.
T Consensus 59 l~~~l~~l~~e~~el~d~~lR~~AdfeN~rkR 90 (215)
T PRK14146 59 LQKELDNAKKEIESLKDSWARERAEFQNFKRR 90 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555544455555555555544
No 374
>PF08041 PetM: PetM family of cytochrome b6f complex subunit 7; InterPro: IPR012595 This family consists of the PetM family of cytochrome b6f complex subunit IV. The cytochrome b6f complex consists of 7 subunits and contains 2 beta haem's and 1 chlorophyll alpha per cytochrome f. It is highly active in transferring electrons from decylplastoquinol to oxidised plastocyanin [].; GO: 0009512 cytochrome b6f complex; PDB: 2ZT9_F 1Q90_M 2E76_F 2E75_F 2E74_F 2D2C_S 1VF5_S.
Probab=21.12 E-value=1.5e+02 Score=17.59 Aligned_cols=16 Identities=19% Similarity=0.544 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHhc
Q 026478 221 VLLIGLLGILVGYLVK 236 (238)
Q Consensus 221 v~~v~ll~~llG~~~~ 236 (238)
...+.++|+.+||++-
T Consensus 10 ~~~lvlvGla~Gf~LL 25 (31)
T PF08041_consen 10 CFGLVLVGLALGFVLL 25 (31)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3567788888888764
No 375
>PRK14141 heat shock protein GrpE; Provisional
Probab=21.06 E-value=2.1e+02 Score=24.45 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 181 SKLTEEKTSAMQQNQKLRQELEFVR 205 (238)
Q Consensus 181 ~~L~eE~~~~~~q~~~L~~e~~~l~ 205 (238)
..|++|...+..+...++.|.+.+|
T Consensus 41 ~~le~e~~elkd~~lR~~Ae~eN~R 65 (209)
T PRK14141 41 EALKAENAELKDRMLRLAAEMENLR 65 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333334444333
No 376
>PF10161 DDDD: Putative mitochondrial precursor protein; InterPro: IPR018782 This entry represents a family of small conserved proteins found from nematodes to humans. The C-terminal region is rich in asparagine. These proteins have been putatively designated as mitochondrial precursor proteins but this has not been confirmed.
Probab=21.05 E-value=20 Score=25.90 Aligned_cols=24 Identities=21% Similarity=0.386 Sum_probs=19.7
Q ss_pred CccHHHHHHHHHHHHHHHHHhcCC
Q 026478 215 GFSTVFVLLIGLLGILVGYLVKTT 238 (238)
Q Consensus 215 g~~~~~v~~v~ll~~llG~~~~~~ 238 (238)
-|-++-++++++-++++|.++.|+
T Consensus 36 ~fgl~~v~~vvip~l~~Ga~isk~ 59 (79)
T PF10161_consen 36 PFGLLRVLAVVIPGLYLGATISKN 59 (79)
T ss_pred cchhheeeeeeccHHHHHHHHHHH
Confidence 466777889999999999998763
No 377
>PF08961 DUF1875: Domain of unknown function (DUF1875); InterPro: IPR015056 MIT can be found in the Nuclear receptor-binding factor 2, it has no known function. ; PDB: 2CRB_A.
Probab=21.04 E-value=32 Score=29.73 Aligned_cols=34 Identities=18% Similarity=0.242 Sum_probs=0.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 171 EKSSEAWSMISKLTEEKTSAMQQNQKLRQELEFV 204 (238)
Q Consensus 171 ~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l 204 (238)
.+...+...+..|-.|...+++||++|+.|..+|
T Consensus 129 T~I~dLrrlVe~L~aeNErLr~EnkqL~ae~arL 162 (243)
T PF08961_consen 129 TKIADLRRLVEFLLAENERLRRENKQLKAENARL 162 (243)
T ss_dssp ----------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555566666666677776666655
No 378
>PRK14144 heat shock protein GrpE; Provisional
Probab=21.00 E-value=2.6e+02 Score=23.74 Aligned_cols=32 Identities=16% Similarity=0.172 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 175 EAWSMISKLTEEKTSAMQQNQKLRQELEFVRK 206 (238)
Q Consensus 175 e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~ 206 (238)
++.+.+..|++|...+......++.|.+.+|+
T Consensus 49 ~l~~~i~~le~e~~elkdk~lR~~AefeN~RK 80 (199)
T PRK14144 49 ALEEQLTLAEQKAHENWEKSVRALAELENVRR 80 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444443
No 379
>PRK04406 hypothetical protein; Provisional
Probab=20.99 E-value=3e+02 Score=19.42 Aligned_cols=32 Identities=13% Similarity=-0.024 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 173 SSEAWSMISKLTEEKTSAMQQNQKLRQELEFV 204 (238)
Q Consensus 173 ~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l 204 (238)
+.+++..|.+.+.++..+.++.+.|.+.+..+
T Consensus 27 Ie~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 58 (75)
T PRK04406 27 IEELNDALSQQQLLITKMQDQMKYVVGKVKNM 58 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34666666666666667777777776655544
No 380
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=20.98 E-value=1.2e+02 Score=22.90 Aligned_cols=12 Identities=25% Similarity=0.725 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHH
Q 026478 222 LLIGLLGILVGY 233 (238)
Q Consensus 222 ~~v~ll~~llG~ 233 (238)
+++.++|+++|+
T Consensus 78 l~~lllGv~~G~ 89 (100)
T TIGR02230 78 LTMLIVGVVIGC 89 (100)
T ss_pred HHHHHHHHHHHH
Confidence 344445555544
No 381
>PRK14153 heat shock protein GrpE; Provisional
Probab=20.88 E-value=1.8e+02 Score=24.56 Aligned_cols=33 Identities=33% Similarity=0.217 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 175 EAWSMISKLTEEKTSAMQQNQKLRQELEFVRKE 207 (238)
Q Consensus 175 e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~~ 207 (238)
.+..+|..|+++...+..+...++.|.+.+|+.
T Consensus 37 ~~~~ei~~l~~e~~elkd~~lR~~AEfeN~rKR 69 (194)
T PRK14153 37 TADSETEKCREEIESLKEQLFRLAAEFDNFRKR 69 (194)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555443
No 382
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=20.87 E-value=2.6e+02 Score=21.39 Aligned_cols=39 Identities=10% Similarity=0.132 Sum_probs=20.6
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 168 VPKEKSSEAWSMISKLTEEKTSAMQQNQKLRQELEFVRK 206 (238)
Q Consensus 168 ~~~~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~ 206 (238)
++..+++.+...+..++-.+..+..|++.|+.-+..|+.
T Consensus 13 el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~ 51 (107)
T PF09304_consen 13 ELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQA 51 (107)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHH
Confidence 344555555555555555555556666555554444443
No 383
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=20.86 E-value=2.7e+02 Score=21.59 Aligned_cols=35 Identities=14% Similarity=0.164 Sum_probs=21.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 171 EKSSEAWSMISKLTEEKTSAMQQNQKLRQELEFVR 205 (238)
Q Consensus 171 ~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~ 205 (238)
.++.++.++...|+++...+..+...|+..+..++
T Consensus 6 ~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~ 40 (140)
T PRK03947 6 QELEELAAQLQALQAQIEALQQQLEELQASINELD 40 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666666655554443
No 384
>PF10939 DUF2631: Protein of unknown function (DUF2631) ; InterPro: IPR024341 This entry represents a bacterial protein of unknown function.
Probab=20.85 E-value=89 Score=21.72 Aligned_cols=17 Identities=12% Similarity=-0.121 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHhcCC
Q 026478 222 LLIGLLGILVGYLVKTT 238 (238)
Q Consensus 222 ~~v~ll~~llG~~~~~~ 238 (238)
..++.+.|||++++|.|
T Consensus 35 ~g~~~~~~Ll~ml~GNH 51 (65)
T PF10939_consen 35 AGWISALFLLAMLIGNH 51 (65)
T ss_pred hHHHHHHHHHHHHhcCC
Confidence 34444557778887765
No 385
>PRK14145 heat shock protein GrpE; Provisional
Probab=20.75 E-value=2.7e+02 Score=23.61 Aligned_cols=34 Identities=24% Similarity=0.259 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 174 SEAWSMISKLTEEKTSAMQQNQKLRQELEFVRKE 207 (238)
Q Consensus 174 ~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~~ 207 (238)
..+.+.+..|+++...+......++.|.+.+|+.
T Consensus 48 ~~l~~~l~~le~e~~el~d~~lR~~AEfeN~rkR 81 (196)
T PRK14145 48 EELKQKLQQKEVEAQEYLDIAQRLKAEFENYRKR 81 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555555443
No 386
>PRK14160 heat shock protein GrpE; Provisional
Probab=20.68 E-value=2.5e+02 Score=24.08 Aligned_cols=22 Identities=23% Similarity=0.196 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 026478 177 WSMISKLTEEKTSAMQQNQKLR 198 (238)
Q Consensus 177 ~~~i~~L~eE~~~~~~q~~~L~ 198 (238)
..++..|+++...+.++...++
T Consensus 60 ~~e~~~l~~~l~~l~~e~~elk 81 (211)
T PRK14160 60 KDENNKLKEENKKLENELEALK 81 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 387
>PRK01470 tatA twin arginine translocase protein A; Provisional
Probab=20.68 E-value=1.1e+02 Score=20.19 Aligned_cols=16 Identities=25% Similarity=0.407 Sum_probs=8.6
Q ss_pred CccHHHHHHHHHHHHH
Q 026478 215 GFSTVFVLLIGLLGIL 230 (238)
Q Consensus 215 g~~~~~v~~v~ll~~l 230 (238)
|++++.++++++++++
T Consensus 2 gig~~elliI~vi~ll 17 (51)
T PRK01470 2 GMSFSHLLIVLLIIFV 17 (51)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 4555555555555554
No 388
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=20.64 E-value=1e+02 Score=29.86 Aligned_cols=21 Identities=10% Similarity=0.145 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 026478 186 EKTSAMQQNQKLRQELEFVRK 206 (238)
Q Consensus 186 E~~~~~~q~~~L~~e~~~l~~ 206 (238)
++++|.+|.++|++++..+.+
T Consensus 32 kie~L~kql~~Lk~q~~~l~~ 52 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQDDLND 52 (489)
T ss_pred HHHHHHHHHHHHHHhhccccc
Confidence 445555555555555444433
No 389
>TIGR03592 yidC_oxa1_cterm membrane protein insertase, YidC/Oxa1 family, C-terminal domain. This model describes full-length from some species, and the C-terminal region only from other species, of the YidC/Oxa1 family of proteins. This domain appears to be univeral among bacteria (although absent from Archaea). The well-characterized YidC protein from Escherichia coli and its close homologs contain a large N-terminal periplasmic domain in addition to the region modeled here.
Probab=20.41 E-value=4.1e+02 Score=21.65 Aligned_cols=32 Identities=28% Similarity=0.311 Sum_probs=16.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 172 KSSEAWSMISKLTEEKTSAMQQNQKLRQELEFVRK 206 (238)
Q Consensus 172 k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~ 206 (238)
+.++.+-++.+++++.+ ++.+++++|...+.+
T Consensus 30 km~~i~P~~~~i~~k~k---~~~~~~~~e~~~l~k 61 (181)
T TIGR03592 30 KMQELQPKLKEIQEKYK---DDPQKLQQEMMKLYK 61 (181)
T ss_pred HHHHhhHHHHHHHHHHH---hhHHHHHHHHHHHHH
Confidence 44455556666655433 233445666555544
No 390
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=20.32 E-value=1.4e+02 Score=25.37 Aligned_cols=21 Identities=19% Similarity=0.295 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 026478 186 EKTSAMQQNQKLRQELEFVRK 206 (238)
Q Consensus 186 E~~~~~~q~~~L~~e~~~l~~ 206 (238)
+...++++|+.|++++..|-.
T Consensus 48 Q~~~LR~~~~~L~~~l~~Li~ 68 (225)
T PF04340_consen 48 QLERLRERNRQLEEQLEELIE 68 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555554433
No 391
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=20.30 E-value=1.6e+02 Score=22.59 Aligned_cols=26 Identities=19% Similarity=0.216 Sum_probs=12.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 173 SSEAWSMISKLTEEKTSAMQQNQKLR 198 (238)
Q Consensus 173 ~~e~~~~i~~L~eE~~~~~~q~~~L~ 198 (238)
..-+..+|..|.+..+.+.+||.-|+
T Consensus 69 Ve~Lk~qI~eL~er~~~Le~EN~lLk 94 (123)
T KOG4797|consen 69 VEVLKEQIRELEERNSALERENSLLK 94 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555554445555554443
No 392
>COG3771 Predicted membrane protein [Function unknown]
Probab=20.27 E-value=1e+02 Score=22.74 Aligned_cols=16 Identities=19% Similarity=0.470 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHh
Q 026478 220 FVLLIGLLGILVGYLV 235 (238)
Q Consensus 220 ~v~~v~ll~~llG~~~ 235 (238)
.++.+..+||++||++
T Consensus 44 Lla~lF~~G~~lgwli 59 (97)
T COG3771 44 LLATLFAAGFALGWLI 59 (97)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3567788899999876
No 393
>COG2882 FliJ Flagellar biosynthesis chaperone [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=20.27 E-value=2.5e+02 Score=22.70 Aligned_cols=46 Identities=24% Similarity=0.208 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCccH
Q 026478 173 SSEAWSMISKLTEEKTSAMQQNQKLRQELEFVRKEISKSRAGGFST 218 (238)
Q Consensus 173 ~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~~~~~~~~~g~~~ 218 (238)
..++..++.+...+.....++...|-.....+++.......+|++.
T Consensus 18 ~e~a~~el~k~~~~~~~~~~qL~~l~~y~~ey~q~~~~k~~~G~s~ 63 (148)
T COG2882 18 EEEAAIELSKIRSEKENAEEQLKMLSGYRNEYEQNLNEKLKSGVSA 63 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccH
Confidence 3566777777777777777777777666666666655555578875
No 394
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=20.20 E-value=2.6e+02 Score=24.21 Aligned_cols=38 Identities=13% Similarity=0.275 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 026478 173 SSEAWSMISKLTEEKTSAMQQNQKLRQELEFVRKEISK 210 (238)
Q Consensus 173 ~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~~~~~ 210 (238)
+.+...++..|.+|+....++.+.+.++...|.....+
T Consensus 34 L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkq 71 (230)
T PF10146_consen 34 LEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQ 71 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 395
>TIGR01791 CM_archaeal chorismate mutase, archaeal type. This model represents a clade of archaeal chorismate mutases. Chorismate mutase catalyzes the conversion of chorismate into prephenate which is subsequently converted into either phenylalanine or tyrosine. In Sulfolobus this gene is found as a fusion with prephenate dehydrogenase (although the non-TIGR annotation contains a typographical error indicating it as a dehydratase) which is the next enzyme in the tyrosine biosynthesis pathway. The Archaeoglobus gene contains an N-terminal prephenate dehydrogenase domain and a C-terminal prephenate dehydratase domain followed by a regulatory amino acid-binding ACT domain. The Thermoplasma volcanium gene is adjacent to prephenate dehydratase.
Probab=20.19 E-value=1.8e+02 Score=20.46 Aligned_cols=33 Identities=12% Similarity=0.158 Sum_probs=24.9
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 168 VPKEKSSEAWSMISKLTEEKTSAMQQNQKLRQE 200 (238)
Q Consensus 168 ~~~~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e 200 (238)
++..+.++.+.+|.+|=.+|..+..+.-.++.+
T Consensus 3 ~lR~~Id~iD~~i~~Ll~~R~~l~~~i~~~K~~ 35 (83)
T TIGR01791 3 ELRQEIEEIDKSILDLIEKRIKIARKIGEIKHN 35 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677788888888888888888887777654
No 396
>PRK06285 chorismate mutase; Provisional
Probab=20.15 E-value=3.6e+02 Score=19.70 Aligned_cols=35 Identities=23% Similarity=0.264 Sum_probs=22.4
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 166 LEVPKEKSSEAWSMISKLTEEKTSAMQQNQKLRQE 200 (238)
Q Consensus 166 ~~~~~~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e 200 (238)
++++..+.++.+.+|..|=.+|..+.++.-.++.+
T Consensus 9 L~elR~~ID~ID~~iv~Ll~~R~~l~~~I~~~K~~ 43 (96)
T PRK06285 9 LNEIRKRIDEIDEQIIDLIAERTSLAKEIAELKKS 43 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666667777777766666666666666543
No 397
>PF05781 MRVI1: MRVI1 protein; InterPro: IPR008677 This family consists of mammalian MRVI1 proteins which are related to the lymphoid-restricted membrane protein (JAW1) and the IP3 receptor associated cGMP kinase substrates A and B (IRAGA and IRAGB). The function of MRVI1 is unknown although mutations in the Mrvi1 gene induces myeloid leukaemia by altering the expression of a gene important for myeloid cell growth and/or differentiation so it has been speculated that Mrvi1 is a tumour suppressor gene []. IRAG is very similar in sequence to MRVI1 and is an essential NO/cGKI-dependent regulator of IP3-induced calcium release. Activation of cGKI decreases IP3-stimulated elevations in intracellular calcium, induces smooth muscle relaxation and contributes to the antiproliferative and pro-apoptotic effects of NO/cGMP []. Jaw1 is a member of a class of proteins with COOH-terminal hydrophobic membrane anchors and is structurally similar to proteins involved in vesicle targeting and fusion. This suggests that the function and/or the structure of the ER in lymphocytes may be modified by lymphoid-restricted resident ER proteins [].
Probab=20.13 E-value=70 Score=31.25 Aligned_cols=17 Identities=41% Similarity=0.700 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHhc
Q 026478 220 FVLLIGLLGILVGYLVK 236 (238)
Q Consensus 220 ~v~~v~ll~~llG~~~~ 236 (238)
+|++++|+||+-|.||.
T Consensus 487 iVLLAaLlSfLtg~~fq 503 (538)
T PF05781_consen 487 IVLLAALLSFLTGLFFQ 503 (538)
T ss_pred HHHHHHHHHHHhccccc
Confidence 45566666666665554
No 398
>PF08138 Sex_peptide: Sex peptide (SP) family; InterPro: IPR012608 This family consists of Sex Peptides (SP) that are found in Drosophila. On mating, Drosophila females decreases her remating rate and increases her egg-laying rate due, in part, to the transfer of SP from the male to the female. SP are found in seminal fluids transferred from the male to the female during mating. The male seminal fluid proteins are referred to as accessory gland proteins (Acps). The SP is one of the most interesting Acps and plays an important role in reproduction [].; GO: 0005179 hormone activity, 0046008 regulation of female receptivity, post-mating, 0005576 extracellular region; PDB: 2LAQ_A.
Probab=20.09 E-value=35 Score=22.79 Aligned_cols=18 Identities=28% Similarity=0.508 Sum_probs=0.0
Q ss_pred ccHHHHHHHHHHHHHHHH
Q 026478 216 FSTVFVLLIGLLGILVGY 233 (238)
Q Consensus 216 ~~~~~v~~v~ll~~llG~ 233 (238)
+++++.++++|+|+..++
T Consensus 3 ~p~~llllvlllGla~s~ 20 (56)
T PF08138_consen 3 TPIFLLLLVLLLGLAQSW 20 (56)
T ss_dssp ------------------
T ss_pred chHHHHHHHHHHHHHhcc
Confidence 455666778888888773
No 399
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=20.07 E-value=2.6e+02 Score=18.89 Aligned_cols=18 Identities=17% Similarity=0.104 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 026478 177 WSMISKLTEEKTSAMQQN 194 (238)
Q Consensus 177 ~~~i~~L~eE~~~~~~q~ 194 (238)
.+++.+|+.++..+..+.
T Consensus 3 ~~E~~rL~Kel~kl~~~i 20 (66)
T PF10458_consen 3 EAEIERLEKELEKLEKEI 20 (66)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555555544333333
No 400
>PRK15192 fimbrial chaperone BcfG; Provisional
Probab=20.02 E-value=2.3e+02 Score=24.58 Aligned_cols=39 Identities=18% Similarity=0.326 Sum_probs=27.8
Q ss_pred EEEEEcCCCCeEEEE-EeecCCCcEEEeCCceeeCCCCEEEEEE
Q 026478 27 SMQLTNKTDKFVAFK-VKTTNPKKYCVRPNTGIILPRTSCAVTV 69 (238)
Q Consensus 27 ~l~L~N~s~~~vaFK-VKTT~p~~Y~VrP~~G~I~P~~s~~V~V 69 (238)
.|++.|+|..+|.|- ++- ..+. + ...+.|.|.++..+.+
T Consensus 163 ~l~v~NpTPyyvtl~~l~v-~~~~--~-~~~~miaPfs~~~~~~ 202 (234)
T PRK15192 163 GATVRNPTPYYVTLFLLRA-NERA--Q-DNAGVVAPFATRQTDW 202 (234)
T ss_pred EEEEECCCCcEEEEEeEEE-cCcc--c-CCCceECCCCccEEec
Confidence 399999999999885 332 2222 2 2457899999888876
Done!