Query 026478
Match_columns 238
No_of_seqs 217 out of 752
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 14:32:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026478.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026478hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wic_A Hypothetical protein ri 100.0 4.2E-38 1.4E-42 254.7 12.2 134 2-140 14-151 (152)
2 2cri_A Vesicle-associated memb 100.0 2E-36 6.9E-41 243.6 16.9 123 4-130 12-136 (147)
3 1z9l_A Vesicle-associated memb 100.0 7.4E-36 2.5E-40 235.0 15.4 118 5-126 9-127 (128)
4 1msp_A MSP, major sperm protei 100.0 6.2E-33 2.1E-37 217.8 15.9 118 5-126 7-125 (126)
5 1row_A SSP-19, MSP-domain prot 100.0 1.1E-29 3.6E-34 194.4 12.7 104 7-124 3-106 (109)
6 1m1s_A WR4; structural genomic 100.0 6.3E-29 2.2E-33 191.5 14.3 106 5-124 9-114 (116)
7 2ys4_A Hydrocephalus-inducing 98.4 1.3E-06 4.6E-11 66.9 8.5 75 11-91 29-104 (122)
8 2e6j_A Hydin protein; PAPD, st 98.2 5.4E-06 1.8E-10 62.0 7.9 71 4-74 7-81 (112)
9 3qbt_B Inositol polyphosphate 98.1 1.8E-05 6E-10 62.3 10.2 70 4-73 24-100 (140)
10 3qis_A Inositol polyphosphate 97.6 0.00023 7.9E-09 64.3 10.0 71 4-74 27-104 (366)
11 2qsv_A Uncharacterized protein 96.8 0.0065 2.2E-07 50.7 9.1 69 6-75 2-71 (220)
12 2qsv_A Uncharacterized protein 96.3 0.019 6.5E-07 47.9 9.1 67 5-74 118-186 (220)
13 3q48_A Chaperone CUPB2; IG fol 94.6 0.61 2.1E-05 39.8 12.8 109 7-129 30-148 (257)
14 2co7_B SAFB chaperone, putativ 91.9 1.5 5.2E-05 36.4 10.6 115 7-129 14-134 (221)
15 4ay0_A Chaperone protein CAF1M 91.5 4.8 0.00017 33.3 13.2 109 7-129 14-129 (218)
16 2xg5_A PAPD, chaperone protein 91.2 5.6 0.00019 32.8 14.9 109 7-129 2-119 (218)
17 1l4i_A SFAE protein; periplasm 90.4 6.3 0.00022 32.2 14.1 111 7-129 2-119 (206)
18 3gfu_C Chaperone protein FAEE; 90.3 7.1 0.00024 32.5 13.5 107 7-129 2-115 (224)
19 1yew_A Particulate methane mon 90.2 1.8 6.3E-05 38.7 9.8 68 5-74 248-337 (382)
20 4djm_A DRAB; chaperone, PILI; 90.1 2.6 8.8E-05 35.5 10.4 84 7-96 24-112 (239)
21 1klf_A FIMC chaperone, chapero 89.9 7.1 0.00024 31.9 15.2 111 7-129 2-119 (205)
22 1nlw_A MAD protein, MAX dimeri 88.6 1.1 3.7E-05 31.4 5.8 38 171-208 40-77 (80)
23 2jee_A YIIU; FTSZ, septum, coi 88.2 1 3.4E-05 31.7 5.4 37 167-203 9-45 (81)
24 1nkp_B MAX protein, MYC proto- 85.0 2.7 9.2E-05 29.2 6.3 38 172-209 41-78 (83)
25 2r39_A FIXG-related protein; s 84.4 5 0.00017 29.6 8.0 51 24-74 33-84 (118)
26 1gd2_E Transcription factor PA 84.0 0.71 2.4E-05 31.6 2.8 33 173-205 31-63 (70)
27 2jee_A YIIU; FTSZ, septum, coi 83.7 1.6 5.4E-05 30.7 4.5 36 167-202 30-65 (81)
28 3rfr_A PMOB; membrane, oxidore 83.1 4.9 0.00017 36.3 8.5 66 6-74 283-369 (419)
29 1t2k_D Cyclic-AMP-dependent tr 81.6 3.6 0.00012 27.0 5.5 34 173-206 24-57 (61)
30 3c3g_A Alpha/beta peptide with 81.0 4.6 0.00016 23.3 4.9 28 181-208 3-30 (33)
31 2oxj_A Hybrid alpha/beta pepti 80.6 5.1 0.00017 23.2 5.0 29 180-208 3-31 (34)
32 1ci6_A Transcription factor AT 80.2 4 0.00014 27.1 5.3 35 172-206 24-58 (63)
33 2oqq_A Transcription factor HY 80.1 3.1 0.00011 25.4 4.2 32 168-199 7-38 (42)
34 3m48_A General control protein 80.1 3 0.0001 24.1 4.0 27 182-208 4-30 (33)
35 3c3f_A Alpha/beta peptide with 79.8 5.2 0.00018 23.2 4.9 29 180-208 3-31 (34)
36 2wt7_A Proto-oncogene protein 79.5 4.4 0.00015 26.8 5.4 34 173-206 25-58 (63)
37 1nkp_A C-MYC, MYC proto-oncoge 77.3 6 0.0002 28.0 5.9 36 172-207 46-81 (88)
38 2yy0_A C-MYC-binding protein; 76.9 6.1 0.00021 25.3 5.3 28 180-207 21-48 (53)
39 1hjb_A Ccaat/enhancer binding 76.5 5.3 0.00018 28.4 5.3 38 173-210 38-75 (87)
40 1uo4_A General control protein 75.6 5.3 0.00018 23.2 4.1 28 181-208 4-31 (34)
41 2akf_A Coronin-1A; coiled coil 75.3 3.5 0.00012 23.2 3.2 25 182-206 3-27 (32)
42 1jnm_A Proto-oncogene C-JUN; B 74.6 2.9 0.0001 27.5 3.4 30 175-204 26-55 (62)
43 1am9_A Srebp-1A, protein (ster 73.4 7.7 0.00026 26.9 5.5 33 172-204 44-76 (82)
44 2bni_A General control protein 73.3 5.7 0.00019 23.0 3.9 28 181-208 4-31 (34)
45 1kd8_A GABH AIV, GCN4 acid bas 73.1 5.7 0.00019 23.3 3.9 27 181-207 4-30 (36)
46 3m91_A Proteasome-associated A 72.8 6.6 0.00023 25.0 4.6 34 171-204 16-49 (51)
47 1kd8_B GABH BLL, GCN4 acid bas 72.8 8.8 0.0003 22.5 4.6 28 181-208 4-31 (36)
48 3m9b_A Proteasome-associated A 72.7 2.1 7.4E-05 36.3 2.9 39 168-206 58-96 (251)
49 1gu4_A CAAT/enhancer binding p 72.6 7.4 0.00025 27.0 5.2 34 174-207 39-72 (78)
50 1gd2_E Transcription factor PA 72.5 5.6 0.00019 27.1 4.4 37 168-204 33-69 (70)
51 2w6b_A RHO guanine nucleotide 72.1 12 0.00041 24.1 5.6 28 175-202 7-34 (56)
52 4h22_A Leucine-rich repeat fli 71.8 10 0.00035 27.7 5.9 38 166-203 4-41 (103)
53 1hlo_A Protein (transcription 71.1 5.1 0.00018 27.6 4.1 29 172-200 51-79 (80)
54 2w6a_A ARF GTPase-activating p 70.4 8 0.00027 25.4 4.6 35 168-202 17-51 (63)
55 2dgc_A Protein (GCN4); basic d 70.3 4.6 0.00016 26.8 3.6 32 177-208 29-60 (63)
56 3mq7_A Bone marrow stromal ant 70.0 7.8 0.00027 29.0 5.0 30 178-207 71-100 (121)
57 2wq1_A General control protein 69.9 12 0.0004 21.5 4.6 28 181-208 3-30 (33)
58 4dzn_A Coiled-coil peptide CC- 69.4 12 0.00042 20.8 4.8 25 180-204 4-28 (33)
59 1dh3_A Transcription factor CR 68.5 3.8 0.00013 26.5 2.8 30 177-206 21-50 (55)
60 1dh3_A Transcription factor CR 68.4 10 0.00035 24.4 4.8 31 171-201 22-52 (55)
61 2dgc_A Protein (GCN4); basic d 68.4 12 0.00042 24.6 5.4 32 171-202 30-61 (63)
62 1nkp_A C-MYC, MYC proto-oncoge 68.2 8.2 0.00028 27.2 4.8 35 171-205 52-86 (88)
63 2wuj_A Septum site-determining 68.1 8.2 0.00028 25.0 4.4 33 174-206 23-55 (57)
64 3zy7_A AP-1 complex subunit ga 68.0 7.3 0.00025 29.2 4.7 82 23-108 30-121 (122)
65 2hy6_A General control protein 67.7 9 0.00031 22.2 3.9 28 181-208 4-31 (34)
66 1t2k_D Cyclic-AMP-dependent tr 65.7 8.2 0.00028 25.2 4.1 32 176-207 20-51 (61)
67 2r2v_A GCN4 leucine zipper; co 65.7 16 0.00054 21.2 4.6 27 181-207 4-30 (34)
68 1fmh_A General control protein 64.5 12 0.00042 20.8 3.9 26 180-205 3-28 (33)
69 1uii_A Geminin; human, DNA rep 64.3 19 0.00066 25.2 5.9 35 173-207 41-75 (83)
70 1go4_E MAD1 (mitotic arrest de 64.1 17 0.00057 26.4 5.8 31 172-202 13-43 (100)
71 1nkp_B MAX protein, MYC proto- 63.9 8.3 0.00029 26.6 4.1 34 171-204 47-80 (83)
72 2wt7_B Transcription factor MA 63.7 17 0.00057 25.9 5.6 32 175-206 52-83 (90)
73 2l5g_B Putative uncharacterize 63.1 23 0.00078 21.5 5.4 34 175-208 6-39 (42)
74 3v86_A De novo design helix; c 62.8 14 0.00047 19.7 3.7 23 182-204 4-26 (27)
75 3hnw_A Uncharacterized protein 62.5 7.2 0.00025 30.0 3.8 36 169-204 80-115 (138)
76 1nlw_A MAD protein, MAX dimeri 62.4 11 0.00037 26.1 4.4 33 171-203 47-79 (80)
77 2wt7_A Proto-oncogene protein 61.6 24 0.00081 23.1 5.8 33 175-207 20-52 (63)
78 4dzn_A Coiled-coil peptide CC- 60.4 20 0.00068 20.0 4.3 26 174-199 5-30 (33)
79 1go4_E MAD1 (mitotic arrest de 59.2 16 0.00056 26.5 5.0 32 177-208 11-42 (100)
80 1jnm_A Proto-oncogene C-JUN; B 58.9 29 0.001 22.5 5.9 35 175-209 19-53 (62)
81 2wt7_B Transcription factor MA 58.3 9.6 0.00033 27.2 3.5 30 177-206 47-76 (90)
82 2wg5_A General control protein 57.8 13 0.00044 27.3 4.3 27 180-206 9-35 (109)
83 3nmd_A CGMP dependent protein 57.1 15 0.0005 25.2 4.1 27 178-204 40-66 (72)
84 4emc_A Monopolin complex subun 56.8 12 0.0004 30.4 4.2 29 177-205 26-54 (190)
85 2wuj_A Septum site-determining 56.1 11 0.00036 24.4 3.2 34 168-201 24-57 (57)
86 3w03_C DNA repair protein XRCC 55.7 20 0.00069 28.9 5.5 32 173-204 147-178 (184)
87 3efg_A Protein SLYX homolog; x 55.6 20 0.00067 24.8 4.7 43 166-208 16-58 (78)
88 2w6a_A ARF GTPase-activating p 55.2 26 0.00088 22.9 4.8 37 170-206 26-62 (63)
89 2xzz_A Protein-glutamine gamma 54.4 57 0.0019 23.4 7.9 55 20-75 18-75 (102)
90 2yy0_A C-MYC-binding protein; 53.0 26 0.00088 22.3 4.6 30 173-202 21-50 (53)
91 2xdj_A Uncharacterized protein 52.5 38 0.0013 23.6 5.8 31 175-205 24-54 (83)
92 1dip_A Delta-sleep-inducing pe 52.5 25 0.00085 24.1 4.6 31 171-208 15-45 (78)
93 4e61_A Protein BIM1; EB1-like 52.0 27 0.00094 25.6 5.2 34 169-202 9-42 (106)
94 2l5g_A GPS2 protein, G protein 51.8 28 0.00095 20.6 4.1 21 174-194 11-31 (38)
95 1ci6_A Transcription factor AT 51.5 46 0.0016 21.7 5.9 32 176-207 21-52 (63)
96 3mq7_A Bone marrow stromal ant 51.1 36 0.0012 25.4 5.7 35 172-206 72-106 (121)
97 3idu_A Uncharacterized protein 50.9 50 0.0017 24.7 6.8 69 20-97 31-100 (127)
98 2huh_A Putative DNA mismatch r 50.5 51 0.0017 25.5 6.8 65 25-97 29-94 (147)
99 3sja_C Golgi to ER traffic pro 50.2 33 0.0011 22.9 4.9 39 171-209 6-56 (65)
100 2ks1_B Epidermal growth factor 49.2 13 0.00043 23.0 2.5 17 221-237 21-37 (44)
101 3m91_A Proteasome-associated A 49.2 48 0.0016 21.0 5.5 38 171-208 9-46 (51)
102 2oqq_A Transcription factor HY 48.9 42 0.0015 20.3 5.7 36 172-207 4-39 (42)
103 1a93_B MAX protein, coiled coi 48.7 27 0.00092 20.3 3.7 21 181-201 10-30 (34)
104 3u1c_A Tropomyosin alpha-1 cha 48.6 25 0.00087 25.3 4.6 39 167-205 26-64 (101)
105 1dip_A Delta-sleep-inducing pe 48.1 27 0.00094 23.9 4.3 24 165-188 16-39 (78)
106 3q0x_A Centriole protein; cent 47.3 23 0.00077 29.6 4.6 42 166-207 173-214 (228)
107 2ls4_A High affinity copper up 52.9 4 0.00014 22.4 0.0 17 220-236 4-20 (26)
108 4etp_A Kinesin-like protein KA 47.2 21 0.00072 32.1 4.8 33 168-200 7-39 (403)
109 3i00_A HIP-I, huntingtin-inter 46.8 25 0.00087 26.3 4.4 19 189-207 65-83 (120)
110 2aze_B Transcription factor E2 45.4 45 0.0015 24.2 5.6 35 171-205 6-40 (106)
111 3s9g_A Protein hexim1; cyclin 44.8 48 0.0017 23.9 5.4 23 181-203 68-90 (104)
112 1wlq_A Geminin; coiled-coil; 2 44.8 51 0.0017 23.0 5.4 32 175-206 35-66 (83)
113 3s9g_A Protein hexim1; cyclin 44.7 30 0.001 25.0 4.3 35 172-206 38-79 (104)
114 4etp_A Kinesin-like protein KA 44.6 34 0.0012 30.7 5.8 22 169-190 15-36 (403)
115 2zvf_A Alanyl-tRNA synthetase; 44.0 30 0.001 26.7 4.7 31 174-204 28-58 (171)
116 1a93_A Coiled coil, LZ, MYC pr 43.6 47 0.0016 19.2 4.2 26 179-204 8-33 (34)
117 4emc_A Monopolin complex subun 43.5 48 0.0016 26.8 5.8 36 171-206 13-48 (190)
118 2l2t_A Receptor tyrosine-prote 43.0 18 0.00062 22.3 2.5 17 221-237 20-36 (44)
119 1gyu_A Adapter-related protein 42.8 45 0.0016 25.4 5.5 67 24-94 49-121 (140)
120 1ic2_A Tropomyosin alpha chain 42.4 41 0.0014 23.0 4.7 38 168-205 24-61 (81)
121 1jcd_A Major outer membrane li 41.9 64 0.0022 20.5 5.1 34 169-202 9-42 (52)
122 1wt6_A Myotonin-protein kinase 41.7 60 0.002 22.5 5.3 21 186-206 46-66 (81)
123 2v66_B Nuclear distribution pr 41.6 51 0.0017 24.3 5.3 33 168-200 21-57 (111)
124 3e38_A Two-domain protein cont 41.5 39 0.0013 29.7 5.6 65 26-97 270-334 (343)
125 1iu1_A Gamma1-adaptin; coated 41.1 61 0.0021 24.8 6.0 67 24-94 55-127 (146)
126 1deb_A APC protein, adenomatou 40.7 67 0.0023 20.2 5.6 24 172-195 4-27 (54)
127 1gu4_A CAAT/enhancer binding p 40.7 78 0.0027 21.7 5.9 29 180-208 38-66 (78)
128 2eqb_B RAB guanine nucleotide 40.5 36 0.0012 24.6 4.2 13 192-204 47-59 (97)
129 1t6f_A Geminin; coiled-coil, c 40.3 45 0.0016 19.5 3.8 18 180-197 16-33 (37)
130 4ani_A Protein GRPE; chaperone 40.3 47 0.0016 27.3 5.5 37 172-208 60-96 (213)
131 3iv1_A Tumor susceptibility ge 40.2 41 0.0014 23.2 4.3 31 174-204 42-72 (78)
132 1hjb_A Ccaat/enhancer binding 39.8 78 0.0027 22.2 5.9 29 180-208 38-66 (87)
133 3kin_B Kinesin heavy chain; mo 39.1 49 0.0017 24.4 5.0 31 175-205 86-116 (117)
134 3trt_A Vimentin; cytoskeleton, 38.9 43 0.0015 22.4 4.3 20 184-203 55-74 (77)
135 2wvr_A Geminin; DNA replicatio 38.8 64 0.0022 26.3 5.9 23 176-198 120-142 (209)
136 3sjb_C Golgi to ER traffic pro 38.4 63 0.0021 23.1 5.1 38 171-208 23-72 (93)
137 4fm3_A Uncharacterized hypothe 38.3 38 0.0013 24.4 4.1 30 171-200 64-93 (98)
138 3s4r_A Vimentin; alpha-helix, 38.2 70 0.0024 22.6 5.5 31 175-205 60-90 (93)
139 3cvf_A Homer-3, homer protein 38.0 52 0.0018 22.8 4.6 35 169-203 18-52 (79)
140 2z5i_A TM, general control pro 37.9 74 0.0025 20.0 5.0 31 172-202 13-43 (52)
141 3m9b_A Proteasome-associated A 37.8 29 0.001 29.3 3.9 40 170-209 53-92 (251)
142 3u59_A Tropomyosin beta chain; 37.7 49 0.0017 23.6 4.7 38 167-204 26-63 (101)
143 3hd7_B Syntaxin-1A; membrane p 37.7 76 0.0026 22.9 5.8 13 222-234 95-107 (109)
144 2zxx_A Geminin; coiled-coil, c 37.5 61 0.0021 22.4 4.8 27 175-201 38-64 (79)
145 1uii_A Geminin; human, DNA rep 37.3 90 0.0031 21.8 5.7 26 174-199 49-74 (83)
146 3hn9_A Lamin-B1; structural ge 37.3 58 0.002 24.2 5.2 42 26-68 25-72 (123)
147 3w03_C DNA repair protein XRCC 36.9 46 0.0016 26.8 4.8 24 183-206 150-173 (184)
148 3hd7_A Vesicle-associated memb 35.8 64 0.0022 22.6 4.9 9 226-234 81-89 (91)
149 3cve_A Homer protein homolog 1 35.6 62 0.0021 22.0 4.6 33 170-202 13-45 (72)
150 3a7o_A Autophagy protein 16; c 35.5 75 0.0026 21.5 4.8 35 168-202 22-56 (75)
151 2v4h_A NF-kappa-B essential mo 35.1 59 0.002 23.9 4.7 33 167-199 27-59 (110)
152 3vlc_E Golgi to ER traffic pro 34.6 42 0.0014 24.0 3.7 39 171-209 30-80 (94)
153 2j5u_A MREC protein; bacterial 34.5 39 0.0013 28.3 4.3 35 169-207 24-58 (255)
154 1ytz_T Troponin T; muscle, THI 34.2 81 0.0028 23.0 5.4 42 167-208 45-86 (107)
155 2kes_A Synphilin-1; synphillin 34.0 81 0.0028 19.2 5.1 32 173-204 6-37 (48)
156 1scf_A Stem cell factor; steel 33.8 8.7 0.0003 32.5 0.0 22 215-236 210-233 (273)
157 3nmd_A CGMP dependent protein 33.5 94 0.0032 21.1 5.2 46 166-211 21-66 (72)
158 2eqb_B RAB guanine nucleotide 33.4 1.2E+02 0.004 21.8 6.0 32 171-202 5-36 (97)
159 1wlq_A Geminin; coiled-coil; 2 32.9 54 0.0018 22.9 4.0 24 175-198 42-65 (83)
160 1wm3_A Ubiquitin-like protein 32.8 38 0.0013 22.3 3.2 21 27-47 3-23 (72)
161 1fxk_C Protein (prefoldin); ar 32.8 79 0.0027 23.3 5.4 37 169-205 93-129 (133)
162 3u06_A Protein claret segregat 31.4 56 0.0019 29.5 5.0 32 169-200 8-39 (412)
163 3tnu_B Keratin, type II cytosk 31.4 93 0.0032 23.0 5.5 34 169-202 34-67 (129)
164 2fxo_A Myosin heavy chain, car 31.4 78 0.0027 23.5 5.1 39 169-207 81-119 (129)
165 2xdj_A Uncharacterized protein 31.4 74 0.0025 22.1 4.6 33 168-200 24-56 (83)
166 2jwa_A Receptor tyrosine-prote 31.2 25 0.00086 21.6 1.8 17 221-237 21-37 (44)
167 3vmx_A Voltage-gated hydrogen 30.9 99 0.0034 19.3 5.3 14 194-207 27-40 (48)
168 3fga_D Shugoshin-like 1; PP2A, 30.2 41 0.0014 20.8 2.6 19 170-188 23-41 (47)
169 3q4f_C DNA repair protein XRCC 30.0 60 0.0021 26.0 4.3 23 177-199 160-182 (186)
170 1j1d_B Troponin T, TNT; THIN f 29.2 87 0.003 22.8 4.8 42 167-208 45-86 (106)
171 1zxa_A CGMP-dependent protein 29.1 95 0.0033 20.7 4.6 39 169-207 16-54 (67)
172 3mud_A DNA repair protein XRCC 28.7 85 0.0029 25.0 5.0 31 172-202 136-166 (175)
173 1jcd_A Major outer membrane li 28.6 1.1E+02 0.0039 19.3 5.4 32 171-202 4-35 (52)
174 2io0_B Small ubiquitin-related 28.6 53 0.0018 22.9 3.5 22 26-47 6-27 (91)
175 3q8t_A Beclin-1; autophagy, AT 28.4 1.4E+02 0.0049 21.0 5.8 28 175-202 22-49 (96)
176 3tnu_A Keratin, type I cytoske 27.9 1E+02 0.0036 22.9 5.3 32 170-201 37-68 (131)
177 2iaa_C Azurin; quinoprotein, t 27.8 80 0.0027 23.4 4.6 63 6-71 11-98 (128)
178 3isy_A Bsupi, intracellular pr 27.8 1.4E+02 0.0047 22.1 5.8 32 7-44 9-40 (120)
179 3jt0_A Lamin-B1; structural ge 27.5 1E+02 0.0034 23.6 5.2 43 26-68 38-85 (144)
180 3cvf_A Homer-3, homer protein 27.0 64 0.0022 22.3 3.5 30 173-202 8-37 (79)
181 1l8d_A DNA double-strand break 26.7 75 0.0026 22.6 4.2 36 169-204 8-43 (112)
182 1jb0_X Photosystem I subunit P 26.7 63 0.0022 18.6 2.8 18 219-236 15-32 (35)
183 4e61_A Protein BIM1; EB1-like 26.5 1.7E+02 0.0057 21.3 5.9 25 170-194 17-41 (106)
184 1fxk_C Protein (prefoldin); ar 26.3 1.4E+02 0.0047 21.9 5.7 29 174-202 4-32 (133)
185 3swk_A Vimentin; cytoskeleton, 26.0 1.6E+02 0.0056 20.2 5.8 29 174-202 3-31 (86)
186 3he5_A Synzip1; heterodimeric 25.9 1.1E+02 0.0038 18.3 5.9 20 175-194 7-26 (49)
187 1ifr_A Lamin A/C; immunoglobul 25.9 1.4E+02 0.0049 22.0 5.6 43 26-68 19-67 (121)
188 3viq_B Mating-type switching p 25.7 71 0.0024 22.4 3.6 15 176-190 6-20 (85)
189 4ath_A MITF, microphthalmia-as 25.6 85 0.0029 21.9 4.0 26 172-197 33-58 (83)
190 1p4u_A ADP-ribosylation factor 25.5 1.3E+02 0.0045 23.1 5.6 80 27-110 58-152 (153)
191 3u06_A Protein claret segregat 25.4 1.1E+02 0.0038 27.4 5.9 27 167-193 13-39 (412)
192 2ccw_A Azurin II, AZN-2; elect 25.3 83 0.0028 23.4 4.3 63 6-71 12-99 (129)
193 1uix_A RHO-associated kinase; 25.2 1.4E+02 0.0048 20.1 4.9 19 168-186 15-33 (71)
194 2wg5_A General control protein 25.1 72 0.0025 23.1 3.8 26 174-199 10-35 (109)
195 2v71_A Nuclear distribution pr 25.0 97 0.0033 25.0 4.8 19 180-198 90-108 (189)
196 3a7o_A Autophagy protein 16; c 24.9 87 0.003 21.1 3.7 24 178-201 18-41 (75)
197 1p9i_A Cortexillin I/GCN4 hybr 24.8 93 0.0032 17.0 3.2 14 191-204 12-25 (31)
198 3ndz_E Endoglucanase D; cellot 24.8 1.9E+02 0.0066 20.7 6.2 49 24-72 17-86 (107)
199 3vta_A Cucumisin; subtilisin-l 24.2 3E+02 0.01 25.8 8.9 50 24-73 539-591 (621)
200 3iyn_Q Protein IX, PIX, hexon- 24.2 80 0.0027 23.8 3.8 20 188-207 108-127 (140)
201 1fzc_C Fibrin; blood coagulati 24.1 1E+02 0.0035 26.8 5.1 40 168-207 8-47 (319)
202 1l8d_A DNA double-strand break 24.0 1.8E+02 0.0061 20.5 5.8 29 176-204 69-97 (112)
203 2aze_A Transcription factor DP 23.9 1.4E+02 0.0047 23.3 5.3 6 182-187 9-14 (155)
204 3rmi_A Chorismate mutase prote 23.9 1.7E+02 0.0059 21.2 5.7 33 166-198 14-46 (114)
205 2io1_B Small ubiquitin-related 23.4 75 0.0026 22.2 3.5 23 25-47 7-29 (94)
206 3q8t_A Beclin-1; autophagy, AT 23.2 1.7E+02 0.0058 20.6 5.4 20 185-204 25-44 (96)
207 2e9g_A AP-1 complex subunit ga 23.2 47 0.0016 24.9 2.5 67 24-94 40-112 (131)
208 3s4r_A Vimentin; alpha-helix, 22.9 2E+02 0.0068 20.1 5.9 38 170-207 8-45 (93)
209 2zqm_A Prefoldin beta subunit 22.5 1.3E+02 0.0045 21.2 4.8 34 169-202 75-108 (117)
210 1klf_A FIMC chaperone, chapero 22.4 1.8E+02 0.006 23.3 6.0 39 27-69 139-177 (205)
211 2d07_B Ubiquitin-like protein 22.4 81 0.0028 21.9 3.5 24 24-47 16-39 (93)
212 1lwu_C Fibrinogen gamma chain; 22.3 93 0.0032 27.1 4.5 35 172-206 20-54 (323)
213 3ra3_B P2F; coiled coil domain 22.2 54 0.0018 17.5 1.8 7 194-200 9-15 (28)
214 1xo8_A AT1G01470; structural g 22.2 1.8E+02 0.0063 22.0 5.8 49 23-71 40-94 (151)
215 3viq_A SWI5-dependent recombin 22.2 1.2E+02 0.0041 22.5 4.6 12 192-203 14-25 (122)
216 2wvr_A Geminin; DNA replicatio 22.1 1.7E+02 0.0058 23.8 5.7 36 172-207 109-144 (209)
217 1deb_A APC protein, adenomatou 21.5 1.6E+02 0.0055 18.5 4.7 37 168-204 7-43 (54)
218 1gk7_A Vimentin; intermediate 21.3 1E+02 0.0035 18.2 3.2 14 187-200 22-35 (39)
219 3n7n_E Monopolin complex subun 21.2 20 0.00069 25.6 0.0 24 175-198 47-70 (95)
220 3hd7_B Syntaxin-1A; membrane p 21.1 2.3E+02 0.0079 20.2 8.9 17 221-237 90-106 (109)
221 1ik9_A DNA repair protein XRCC 21.1 1.5E+02 0.0052 24.1 5.4 30 174-203 135-164 (213)
222 2k1a_A Integrin alpha-IIB; sin 21.1 99 0.0034 18.6 3.2 19 213-231 5-23 (42)
223 1yyc_A LEA protein, putative l 21.0 3E+02 0.01 21.5 7.3 50 23-72 63-118 (174)
224 3ibp_A Chromosome partition pr 20.8 99 0.0034 26.7 4.2 33 175-207 7-39 (302)
225 3kyd_D Small ubiquitin-related 20.8 87 0.003 23.1 3.5 24 24-47 39-62 (115)
226 1wt6_A Myotonin-protein kinase 20.8 88 0.003 21.7 3.2 20 186-205 53-72 (81)
227 1lwu_C Fibrinogen gamma chain; 20.6 1.4E+02 0.0048 26.0 5.3 37 171-207 12-48 (323)
228 2lll_A Lamin-B2; immunoglobuli 20.5 1.7E+02 0.0057 22.2 5.2 43 26-68 34-82 (139)
229 1s1c_X RHO-associated, coiled- 20.5 2E+02 0.0069 19.3 5.0 14 171-184 20-33 (71)
230 4b4t_K 26S protease regulatory 20.5 1.5E+02 0.005 26.8 5.6 39 168-206 46-84 (428)
No 1
>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2
Probab=100.00 E-value=4.2e-38 Score=254.66 Aligned_cols=134 Identities=28% Similarity=0.434 Sum_probs=120.1
Q ss_pred CCCCceEEeCC-eeeecccCCCceeEEEEEEcCCCCeEEEEEeecCCCcEEEeCCceeeCCCCEEEEEEEecccccCCCC
Q 026478 2 STGDLVNIQPS-ELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTVTMQAQKEAPPD 80 (238)
Q Consensus 2 ~~~~lL~i~P~-eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~VrP~~G~I~P~~s~~V~V~lq~~~~~p~~ 80 (238)
.++++|.|+|. +|.|.++++++++|.|+|+|+++++||||||||+|++|||||++|+|+||++++|.|+||++.+
T Consensus 14 ~~~~~L~i~P~~~L~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~y~VrP~~GiI~P~~s~~V~V~lq~~~~---- 89 (152)
T 1wic_A 14 FKGPLLHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGASIDIIVSPHGGLT---- 89 (152)
T ss_dssp BCCSSBCBBSSSCBCCCCSSSSCCCEEEEEEBCSSSCEEEEEEESCTTTEEEESSEEEECTTCEEEEEEEECSSSC----
T ss_pred CCCCeEEECCCCeEEEeCCCCceEEEEEEEEcCCCCeEEEEEECCCCCceeecCCCcEECCCCeEEEEEEecCccc----
Confidence 34689999998 8999999999999999999999999999999999999999999999999999999999999753
Q ss_pred CCCCCeEEEEEEeCC--CCCCcccCCCCcccccCCCeeEEEEeEEEEe-cCCCCCCCCCCCCC
Q 026478 81 FQCKDKFLLLSVVAP--DGATAKDIGPDMFTKEDGKVVEEFKLRVVYI-PANPPSPVPEGSEE 140 (238)
Q Consensus 81 ~~~kdKFlVqs~~v~--~~~~~~d~~~~~f~~~~~~~i~~~kL~v~~~-p~~~~s~~~~~~~e 140 (238)
.+|+|||+||++.++ ++.+..|+ .++|++..+..++++||||+|+ |++|++++..|.++
T Consensus 90 ~~~kDKFlVqs~~v~~~~~~~~~d~-~~~wk~~~~~~i~e~kLrv~f~~~~~p~s~~~~g~~~ 151 (152)
T 1wic_A 90 VSAQDRFLIMAAEMEQSSGTGPAEL-SQFWKEVPRNKVMEHRLRCHTVESSKPNSLMLSGPSS 151 (152)
T ss_dssp CCSSCCEEEEEEECCSSCCCSHHHH-HHHHHHSCTTTCEEEEECBCCCCSCSSSSSCCCCCSC
T ss_pred CCCCCEEEEEEEEcCCcCCCChhhH-HHHHhccCCCceEEEEEEEEECCCCCCCCccccCCCC
Confidence 268999999999999 56566678 6899998888999999999999 66777877766554
No 2
>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=100.00 E-value=2e-36 Score=243.61 Aligned_cols=123 Identities=33% Similarity=0.604 Sum_probs=111.9
Q ss_pred CCceEEeCC-eeeecccCCCceeEEEEEEcCCCCeEEEEEeecCCCcEEEeCCceeeCCCCEEEEEEEecccccCCCCCC
Q 026478 4 GDLVNIQPS-ELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTVTMQAQKEAPPDFQ 82 (238)
Q Consensus 4 ~~lL~i~P~-eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~VrP~~G~I~P~~s~~V~V~lq~~~~~p~~~~ 82 (238)
+++|.|+|. +|.|.+++++.+++.|+|+|+++++||||||||+|++|||||++|+|+||++++|.|+||++.. +++++
T Consensus 12 ~~~L~i~P~~~L~F~~p~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~y~VrP~~GiI~P~~s~~v~V~l~~~~~-~p~~~ 90 (147)
T 2cri_A 12 EQILVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSIVTVSVMLQPFDY-DPNEK 90 (147)
T ss_dssp CCCSEEESSSEEEEECCSSSCCCEEEEEECCSSSCEEEEEEESCTTSEEEESSEEECCTTCEEEEEEEECCCCC-CTTCC
T ss_pred CCeEEECCCCeEEEeCCCCceEEEEEEEECCCCCcEEEEEECCCCccEEEcCCCcEECCCCeEEEEEEECCCcC-Ccccc
Confidence 368999996 8999999999999999999999999999999999999999999999999999999999999864 45568
Q ss_pred CCCeEEEEEEeCCCCCCcccCCCCcccccCCCeeEEEEeEEEEe-cCCC
Q 026478 83 CKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYI-PANP 130 (238)
Q Consensus 83 ~kdKFlVqs~~v~~~~~~~d~~~~~f~~~~~~~i~~~kL~v~~~-p~~~ 130 (238)
|+|||+||++.++++.+ |+ .++|++..+..++++||||+|+ |++.
T Consensus 91 ~kDKFlVqs~~~~~~~~--d~-~~~wk~~~~~~i~e~kLrv~f~~p~~~ 136 (147)
T 2cri_A 91 SKHKFMVQTIFAPPNIS--DM-EAVWKEAKPDELMDSKLRCVFEMPNEN 136 (147)
T ss_dssp SCCCEEEEEEECCTTCC--CH-HHHHHHSCTTTCEEEEEEEEEECSCCS
T ss_pred CCCEEEEEEEEcCCCcc--cH-HHHhhcCCCCceEEEEEEEEEecCCCC
Confidence 99999999999998653 66 7899998888999999999998 6543
No 3
>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A
Probab=100.00 E-value=7.4e-36 Score=234.96 Aligned_cols=118 Identities=32% Similarity=0.608 Sum_probs=109.1
Q ss_pred CceEEeCC-eeeecccCCCceeEEEEEEcCCCCeEEEEEeecCCCcEEEeCCceeeCCCCEEEEEEEecccccCCCCCCC
Q 026478 5 DLVNIQPS-ELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTVTMQAQKEAPPDFQC 83 (238)
Q Consensus 5 ~lL~i~P~-eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~VrP~~G~I~P~~s~~V~V~lq~~~~~p~~~~~ 83 (238)
++|.|+|. +|.|.+|+++.+++.|+|+|+++++||||||||+|++|+|||++|+|+||++++|.|+||+++. +++.+|
T Consensus 9 ~~L~i~P~~~l~F~~p~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~y~VrP~~G~i~P~~s~~v~V~~~~~~~-~p~~~~ 87 (128)
T 1z9l_A 9 QILVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGVIDPGSIVTVSVMLQPFDY-DPNEKS 87 (128)
T ss_dssp CCSEEESSSEEEEESCCSSCEEEEEEEECCSSSCEEEEEEESCGGGEEEESCEEEECTTCEEEEEEEECCCCC-CTTCCC
T ss_pred CeEEECCCCeEEEcCCCCceEEEEEEEECCCCCeEEEEEECCCCCceEEeCCCcEECCCCeEEEEEEECcCcC-Cccccc
Confidence 68999996 9999999999999999999999999999999999999999999999999999999999999864 445689
Q ss_pred CCeEEEEEEeCCCCCCcccCCCCcccccCCCeeEEEEeEEEEe
Q 026478 84 KDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYI 126 (238)
Q Consensus 84 kdKFlVqs~~v~~~~~~~d~~~~~f~~~~~~~i~~~kL~v~~~ 126 (238)
+|||+||++.++++.+ |+ .++|++.++..++++||||+|.
T Consensus 88 ~dkF~V~s~~~~~~~~--~~-~~~w~~~~~~~i~e~kLrv~f~ 127 (128)
T 1z9l_A 88 KHKFMVQTIFAPPNIS--DM-EAVWKEAKPDELMDSKLRCVFE 127 (128)
T ss_dssp CCEEEEEEEECCTTCS--CH-HHHHHSCCGGGCEEEEEEEEEE
T ss_pred CCEEEEEEEECCCCcc--hH-HHHhhcCCCCceEEEEEEEEEe
Confidence 9999999999998653 66 7899999888999999999995
No 4
>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A
Probab=100.00 E-value=6.2e-33 Score=217.80 Aligned_cols=118 Identities=25% Similarity=0.455 Sum_probs=104.9
Q ss_pred CceEEeCC-eeeecccCCCceeEEEEEEcCCCCeEEEEEeecCCCcEEEeCCceeeCCCCEEEEEEEecccccCCCCCCC
Q 026478 5 DLVNIQPS-ELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTVTMQAQKEAPPDFQC 83 (238)
Q Consensus 5 ~lL~i~P~-eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~VrP~~G~I~P~~s~~V~V~lq~~~~~p~~~~~ 83 (238)
..|.|+|. +|.|++|+++.++|.|+|+|+|+++||||||||+|++|||||++|+|+||+++.|.|+||++++.|++. .
T Consensus 7 ~~l~i~P~~~l~F~~p~~~~~~~~l~l~N~s~~~vaFKVKTT~p~~y~VrP~~Gii~P~~s~~v~V~~q~~~~~~~~~-~ 85 (126)
T 1msp_A 7 GDINTQPSQKIVFNAPYDDKHTYHIKITNAGGRRIGWAIKTTNMRRLSVDPPCGVLDPKEKVLMAVSCDTFNAATEDL-N 85 (126)
T ss_dssp CCEEEESSSCEEEESCCSSCCCEEEEEEECSSSCEEEEEEESCTTTEEEESCEEEECTTCEEEEEEEECCCCGGGSCC-S
T ss_pred CeEEEcCCCeEEEcCcCCcceEEEEEEECCCCCeEEEEEEcCCCCcEEEECCCeEECCCCEEEEEEEecCCCCCCCcc-C
Confidence 57999997 899999999999999999999999999999999999999999999999999999999999998766553 5
Q ss_pred CCeEEEEEEeCCCCCCcccCCCCcccccCCCeeEEEEeEEEEe
Q 026478 84 KDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYI 126 (238)
Q Consensus 84 kdKFlVqs~~v~~~~~~~d~~~~~f~~~~~~~i~~~kL~v~~~ 126 (238)
+|||+|||+.++++.+ +|+..+|| ..++ .+..++|+|.|.
T Consensus 86 kDKf~Vq~~~~p~~~~-~~~~~~wf-~~d~-~~~~k~L~V~Yn 125 (126)
T 1msp_A 86 NDRITIEWTNTPDGAA-KQFRREWF-QGDG-MVRRKNLPIEYN 125 (126)
T ss_dssp SCEEEEEEEECCTTCC-SSCCTHHH-HSSS-CCEEEEEEEEEE
T ss_pred CCEEEEEEEECCCCcc-hhhhHHhh-cCCC-ceEEEEEEEEec
Confidence 9999999999998864 57854444 4433 689999999995
No 5
>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=99.96 E-value=1.1e-29 Score=194.43 Aligned_cols=104 Identities=23% Similarity=0.328 Sum_probs=90.3
Q ss_pred eEEeCCeeeecccCCCceeEEEEEEcCCCCeEEEEEeecCCCcEEEeCCceeeCCCCEEEEEEEecccccCCCCCCCCCe
Q 026478 7 VNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTVTMQAQKEAPPDFQCKDK 86 (238)
Q Consensus 7 L~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~VrP~~G~I~P~~s~~V~V~lq~~~~~p~~~~~kdK 86 (238)
|.|+|.+|.|+++. .++.|+|+|+++++||||||||+|++|||||++|+|+||++++|.|++|++ + .++||
T Consensus 3 L~i~P~~l~F~~~~---~~~~l~L~N~t~~~vaFKVKtT~p~~y~VrP~~G~I~P~~~~~i~I~~q~~---~---~~~dK 73 (109)
T 1row_A 3 LTADPPACTVPAAG---VSSTHKLVNGGAEKIVFKIKSSNNNEYRIAPVFGFVDPSGSKDVVITRTAG---A---PKEDK 73 (109)
T ss_dssp CEEESSSEEEETTC---EEEEEEEEECSSSCEEEEEEESCSSSEEEECSEEEECTTEEEEEEEEECSC---C---CEEEE
T ss_pred EEEECCEeEEeCCC---CeEEEEEEcCCCCeEEEEEEeCCCCceEEcCCceEECCCCeEEEEEEeCCC---C---CCCCE
Confidence 89999999999874 479999999999999999999999999999999999999999999999985 2 37999
Q ss_pred EEEEEEeCCCCCCcccCCCCcccccCCCeeEEEEeEEE
Q 026478 87 FLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVV 124 (238)
Q Consensus 87 FlVqs~~v~~~~~~~d~~~~~f~~~~~~~i~~~kL~v~ 124 (238)
|+||++.++++. .|. .++|++... .++.+|++.
T Consensus 74 flvq~~~~~~~~--~d~-~~~fk~~~~--~g~~~i~l~ 106 (109)
T 1row_A 74 LVVHFASAPADA--TDA-QAAFVAVAP--AGTVTIPMS 106 (109)
T ss_dssp EEEEEEECCTTC--SCH-HHHHTTCCC--CEEEEEEEE
T ss_pred EEEEEEECCCCC--CCH-HHHhhcCCC--CceEEEEEE
Confidence 999999998764 355 789998754 455566553
No 6
>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=99.96 E-value=6.3e-29 Score=191.51 Aligned_cols=106 Identities=23% Similarity=0.401 Sum_probs=93.2
Q ss_pred CceEEeCCeeeecccCCCceeEEEEEEcCCCCeEEEEEeecCCCcEEEeCCceeeCCCCEEEEEEEecccccCCCCCCCC
Q 026478 5 DLVNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTVTMQAQKEAPPDFQCK 84 (238)
Q Consensus 5 ~lL~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~VrP~~G~I~P~~s~~V~V~lq~~~~~p~~~~~k 84 (238)
.++.++|.+|.|+++. .++.|+|+|+++++||||||||+|++|||||++|+|+||++++|.|++|++ + .++
T Consensus 9 ~~~~~~p~~l~F~~~g---g~~~l~L~N~t~~~vAFKVKtT~p~~YrVrP~~G~I~Pg~~~~I~I~~q~~---~---~k~ 79 (116)
T 1m1s_A 9 SMINVDPPTGNYPATG---GNSTHNITSESDSRLAFKVKSSNNEHYRVRPVYGFVDAKGKSKLDINRLPG---P---PKE 79 (116)
T ss_dssp CSEEEESSEEEECTTC---EEEEEEEEECSSSEEEEEEEESCTTTEEEECSEEEECTTCEEEEEEEECSC---C---SCE
T ss_pred eeeecCCCeEEEecCC---CEEEEEEECCCCCeEEEEEEecCCCceEEcCCceEECCCCeEEEEEEeCCC---C---CCC
Confidence 5789999999998763 589999999999999999999999999999999999999999999999986 2 379
Q ss_pred CeEEEEEEeCCCCCCcccCCCCcccccCCCeeEEEEeEEE
Q 026478 85 DKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVV 124 (238)
Q Consensus 85 dKFlVqs~~v~~~~~~~d~~~~~f~~~~~~~i~~~kL~v~ 124 (238)
|||+||++.++++.. |. .++|++..+ .++.+|++.
T Consensus 80 DKflVq~~~~~~d~~--d~-~~~fk~~~~--~g~~~i~l~ 114 (116)
T 1m1s_A 80 DKIVIQYAEVPAEET--DP-MAPFKAGAQ--QGEIIVKLI 114 (116)
T ss_dssp EEEEEEEEEECTTCC--CT-THHHHTTCC--CEEEEEEEE
T ss_pred CEEEEEEEECCCCCC--CH-HHHHhcCCC--CceEEEEEE
Confidence 999999999987543 55 789998754 577777764
No 7
>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.38 E-value=1.3e-06 Score=66.86 Aligned_cols=75 Identities=19% Similarity=0.348 Sum_probs=60.9
Q ss_pred CCeeeecc-cCCCceeEEEEEEcCCCCeEEEEEeecCCCcEEEeCCceeeCCCCEEEEEEEecccccCCCCCCCCCeEEE
Q 026478 11 PSELKFPF-ELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTVTMQAQKEAPPDFQCKDKFLL 89 (238)
Q Consensus 11 P~eL~F~~-~~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~VrP~~G~I~P~~s~~V~V~lq~~~~~p~~~~~kdKFlV 89 (238)
|..|.|.. +.+......+.|+|.++.++.|++++. .-|.|.|+.|.|.||+++.|.|+..|.... .....+.|
T Consensus 29 p~~l~fg~~~v~~~~~~~~~l~N~g~~~~~f~~~~~--~~F~i~P~~g~L~pg~~~~i~V~F~P~~~g----~~~~~l~v 102 (122)
T 2ys4_A 29 PDKLNFSTCPVKYSTQKILLVRNIGNKNAVFHIKTC--RPFSIEPAIGTLNVGESMQLEVEFEPQSVG----DHSGRLIV 102 (122)
T ss_dssp CSEECCCSEESSSCEEEEEEEECCSSSCEEEEEECC--TTEEEESSEEEECTTCEEEEEEEECCSSSB----CCCCBCEE
T ss_pred CCeeecCCeecCCeEEEEEEEEECCCCCEEEEEecC--CCeEEECCcCEECCCCEEEEEEEEEcCCCc----cEEEEEEE
Confidence 66788854 557788999999999999999999974 469999999999999999999999986421 24455555
Q ss_pred EE
Q 026478 90 LS 91 (238)
Q Consensus 90 qs 91 (238)
..
T Consensus 103 ~~ 104 (122)
T 2ys4_A 103 CY 104 (122)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 8
>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.18 E-value=5.4e-06 Score=62.00 Aligned_cols=71 Identities=17% Similarity=0.199 Sum_probs=60.1
Q ss_pred CCceEEeCCeeeecc-cCCCceeEEEEEEcCCCCeEEEEEeecCC---CcEEEeCCceeeCCCCEEEEEEEeccc
Q 026478 4 GDLVNIQPSELKFPF-ELKKQSSCSMQLTNKTDKFVAFKVKTTNP---KKYCVRPNTGIILPRTSCAVTVTMQAQ 74 (238)
Q Consensus 4 ~~lL~i~P~eL~F~~-~~~~~~~~~l~L~N~s~~~vaFKVKTT~p---~~Y~VrP~~G~I~P~~s~~V~V~lq~~ 74 (238)
+..+.+++..|.|-. ..+...+..++|+|+++.++.|++..... ..|.+.|..|.|.||++..|.|++.+.
T Consensus 7 ~P~i~~~~~~ldFG~v~~g~~~~~~~~l~N~g~~p~~~~~~~~~~~~~~~f~v~p~~g~i~pg~~~~i~V~f~~~ 81 (112)
T 2e6j_A 7 GPKIHFNFELLDIGKVFTGSAHCYEAILYNKGSIDALFNMTPPTSALGACFVFSPKEGIIEPSGVQAIQISFSSI 81 (112)
T ss_dssp CCSEEESCSEEEEEEEESSCCEEEEEEEEECCSSCEEEEECCCSSHHHHHCEEESSEEEECTTBCCEEEEEECCC
T ss_pred CCEEEECcccEecEeEEECCEEEEEEEEEECCcceEEEEEecCCccccCcEEEECCcCEECCCCEEEEEEEEECC
Confidence 357889998899833 56778899999999999999999964221 469999999999999999999999874
No 9
>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens}
Probab=98.13 E-value=1.8e-05 Score=62.31 Aligned_cols=70 Identities=11% Similarity=0.180 Sum_probs=59.9
Q ss_pred CCceEEeCCeeeecc-cCCCceeEEEEEEcCCCCeEEEEEeec------CCCcEEEeCCceeeCCCCEEEEEEEecc
Q 026478 4 GDLVNIQPSELKFPF-ELKKQSSCSMQLTNKTDKFVAFKVKTT------NPKKYCVRPNTGIILPRTSCAVTVTMQA 73 (238)
Q Consensus 4 ~~lL~i~P~eL~F~~-~~~~~~~~~l~L~N~s~~~vaFKVKTT------~p~~Y~VrP~~G~I~P~~s~~V~V~lq~ 73 (238)
.+.+.+++.+|.|-. .++...++.|+|+|++.-+.-|++.-. .+.-+.|.|..|.|.||+++.|.|++..
T Consensus 24 ~P~i~v~~~~ldFG~v~~~~~~~~~l~I~Ntg~vpa~F~f~~~~~~~~~~~~wl~v~P~~G~L~Pge~~~I~v~~~v 100 (140)
T 3qbt_B 24 LPSLELSRREFVFENVKFRQLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVYV 100 (140)
T ss_dssp SCCEEESCCEEEEEEECBTCCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEECTTCEEEEEEEECB
T ss_pred CCceEeeeeeEEeeeceeeeeeeeEEEEEcCCccceEEEEecCCCchhhhhHhhhcCCcccccCCCCeeEEEEEEEE
Confidence 356889999999953 677889999999999999999999853 2346889999999999999999999874
No 10
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A
Probab=97.64 E-value=0.00023 Score=64.33 Aligned_cols=71 Identities=11% Similarity=0.215 Sum_probs=59.5
Q ss_pred CCceEEeCCeeeec-ccCCCceeEEEEEEcCCCCeEEEEEeecCCC-c-----EEEeCCceeeCCCCEEEEEEEeccc
Q 026478 4 GDLVNIQPSELKFP-FELKKQSSCSMQLTNKTDKFVAFKVKTTNPK-K-----YCVRPNTGIILPRTSCAVTVTMQAQ 74 (238)
Q Consensus 4 ~~lL~i~P~eL~F~-~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p~-~-----Y~VrP~~G~I~P~~s~~V~V~lq~~ 74 (238)
.+.+.|++.++.|- -.+....+.+|+|+|++.-+..|++.....+ . +.|.|..|.|.||+++.|.|++...
T Consensus 27 ~P~v~v~~~~idFg~v~~~~~~~~~l~i~N~g~~pa~f~f~~~~~~~~~~~~wl~v~p~~g~l~Pge~~~i~l~~~v~ 104 (366)
T 3qis_A 27 LPSLELSRREFVFENVKFRQLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVYVS 104 (366)
T ss_dssp -CCEEESCSEEEEEEECBTCCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEECTTCEEEEEEEECBC
T ss_pred CCeEEEecCeEEeeeeeeCCeEEEEEEEEecCCceEEEEEEeCCCCCCCCCCcEEEeCCccEECCCCEEEEEEEEEEC
Confidence 35689999999994 3678889999999999999999999754222 2 6699999999999999999998654
No 11
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=96.75 E-value=0.0065 Score=50.72 Aligned_cols=69 Identities=10% Similarity=0.202 Sum_probs=59.2
Q ss_pred ceEEeCCeeeecc-cCCCceeEEEEEEcCCCCeEEEEEeecCCCcEEEeCCceeeCCCCEEEEEEEecccc
Q 026478 6 LVNIQPSELKFPF-ELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTVTMQAQK 75 (238)
Q Consensus 6 lL~i~P~eL~F~~-~~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~VrP~~G~I~P~~s~~V~V~lq~~~ 75 (238)
.|+++|..+.|.- +.+......++++|+++.++-++.-.. |..+..++..+.|.||++..|.|++.+..
T Consensus 2 ~i~~~~~~idFg~v~~g~~~~~~~~i~N~g~~pl~i~~~~~-p~~~~~~~~~~~I~PG~~g~I~vt~~~~~ 71 (220)
T 2qsv_A 2 PLQVSNARLLFPISMPEDEGVVRLVVNNTDESDLQVAVVSL-PSFVSLDDRAFRLQAREPRELNLSLAVPR 71 (220)
T ss_dssp CEEESCSEEECCSBCTTCCCEEEEEEEECSSSCEEEEEEEC-CTTEECSCCEEEECSSSCEEEEEEECCCT
T ss_pred ceEEecCeeEcccccCCCcceEEEEEEeCCCCceEEEeccC-CCceEeeeCcceeCCCCceEEEEEEcchh
Confidence 4899999999954 446667789999999999999997644 88888899999999999999999997653
No 12
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=96.30 E-value=0.019 Score=47.86 Aligned_cols=67 Identities=15% Similarity=0.277 Sum_probs=56.9
Q ss_pred CceEEeCCeeeec-ccCCCceeEEEEEEcCCCCeEEE-EEeecCCCcEEEeCCceeeCCCCEEEEEEEeccc
Q 026478 5 DLVNIQPSELKFP-FELKKQSSCSMQLTNKTDKFVAF-KVKTTNPKKYCVRPNTGIILPRTSCAVTVTMQAQ 74 (238)
Q Consensus 5 ~lL~i~P~eL~F~-~~~~~~~~~~l~L~N~s~~~vaF-KVKTT~p~~Y~VrP~~G~I~P~~s~~V~V~lq~~ 74 (238)
..+.++ ..+.|- .+ +......++|+|.++.++.+ +|+|+. +...+.++.+.|.||++..|.|++.+.
T Consensus 118 ~~i~~~-~~~dfG~i~-g~~~~~~f~i~N~G~~pL~I~~v~~sc-gct~~~~~~~~i~PGe~~~i~v~~~~~ 186 (220)
T 2qsv_A 118 GVMELS-TYLDMGQLD-GETTKAAIEIRNVGAGPLRLHSVTTRN-PALTAVPDRTEIKPGGSTLLRIAVDPQ 186 (220)
T ss_dssp CCEECC-CEEEEEECT-TSCEEEEEEEEECSSSCEEEEEEEECS-TTEEEEESCSEECTTCEEEEEEEECHH
T ss_pred CEEEEE-eEEeeeccC-CCeEEEEEEEEECCCCCEEEEEEEeCC-CCEeeecCCccCCCCCEEEEEEEEecC
Confidence 357777 777773 35 67788999999999999998 888764 789999999999999999999999875
No 13
>3q48_A Chaperone CUPB2; IG fold, periplasmic chaperone; 2.50A {Pseudomonas aeruginosa}
Probab=94.64 E-value=0.61 Score=39.82 Aligned_cols=109 Identities=13% Similarity=0.242 Sum_probs=71.2
Q ss_pred eEEeCCeeeecccCCCceeEEEEEEcCCCCeEEEEEeecCC----------CcEEEeCCceeeCCCCEEEEEEEeccccc
Q 026478 7 VNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNP----------KKYCVRPNTGIILPRTSCAVTVTMQAQKE 76 (238)
Q Consensus 7 L~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p----------~~Y~VrP~~G~I~P~~s~~V~V~lq~~~~ 76 (238)
|.|.|..+.|+.. .-..+|+|+|.++.++.-.+...+. .-|.|.|+.-.|+||+...|.|..... .
T Consensus 30 v~i~~TRvIy~~~---~k~~sl~l~N~~~~P~LvQsWid~~~~~~~p~~~~~pfivtPPl~rl~pg~~q~lRI~~~~~-~ 105 (257)
T 3q48_A 30 LIAQGTRVVFPAS---EREVTLRVSNTSGTPVLAQAWIDDGRQDVPPEELQVPFSVTPAVTRVEPNGGAVLRIAYLKA-P 105 (257)
T ss_dssp -CCSCSEEEEETT---CSEEEEEEEECSSSCEEEEEEEESSCCSSCGGGGCCSEEEESSEEEECTTEEEEEEEEECCC-C
T ss_pred EEEcceEEEEeCC---CcEEEEEEEeCCCCeEEEEEEEEcCCCccCcccccCCEEEcCCEEEECCCCceEEEEEECCC-C
Confidence 5677778888754 2358999999999888777654321 239999999999999999999987654 2
Q ss_pred CCCCCCCCCeEEEEEEeCCCCCCcccCCCCcccccCCCeeEEEEeEEEEecCC
Q 026478 77 APPDFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYIPAN 129 (238)
Q Consensus 77 ~p~~~~~kdKFlVqs~~v~~~~~~~d~~~~~f~~~~~~~i~~~kL~v~~~p~~ 129 (238)
.|.|- .--|-+..-.+|+.... + ...-......+|++-|.|..
T Consensus 106 LP~Dr--ESlf~lnv~eIPp~~~~-~-------~n~Lqiair~rIKLFyRP~~ 148 (257)
T 3q48_A 106 LPTDR--ESLFWLNILEVPPRDED-E-------NNALQFSFRSRFKLFFRPSQ 148 (257)
T ss_dssp CCSSS--CEEEEEEEEEECCC-----------------CCEEEEEEEEEECTT
T ss_pred CCCCc--eeEEEEEeeecCCCCCC-C-------CceEEEEEEEEEEEEEeccc
Confidence 45553 23455555555543210 0 01112356788898888774
No 14
>2co7_B SAFB chaperone, putative fimbriae assembly chaperone; pilus subunit, adhesion, strand complementation, pathogenesis, fibril protein; 1.8A {Salmonella typhimurium} SCOP: b.1.11.1 b.7.2.1 PDB: 2co6_B
Probab=91.91 E-value=1.5 Score=36.40 Aligned_cols=115 Identities=10% Similarity=0.150 Sum_probs=72.3
Q ss_pred eEEeCCeeeecccCCCceeEEEEEEcCCCCeEEEEEeecC-----CCcEEEeCCceeeCCCCEEEEEEEecccccCCCCC
Q 026478 7 VNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTN-----PKKYCVRPNTGIILPRTSCAVTVTMQAQKEAPPDF 81 (238)
Q Consensus 7 L~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~-----p~~Y~VrP~~G~I~P~~s~~V~V~lq~~~~~p~~~ 81 (238)
|.|.+..+.|+... -..+|+|+|.++.++.--+.... ..-|.|.|+.-.|+||+...|.|..... ..|.|-
T Consensus 14 v~i~~TRvIy~~~~---k~~sl~l~N~~~~p~LvQsWv~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~~-~lP~Dr 89 (221)
T 2co7_B 14 VKLGATRVIYHAGT---AGATLSVSNPQNYPILVQSSVKAADKSSPAPFLVMPPLFRLEANQQSQLRIVRTGG-DMPTDR 89 (221)
T ss_dssp CEESCSEEEEETTS---SCEEEEEECCSSSCEEEEEEEEETTSSSBCSEEEESSEEEECTTCEEEEEEEECCC-CCCSSS
T ss_pred EEEcceEEEEcCCC---CEEEEEEEcCCCCcEEEEEEEecCCCCccCCEEEeCCEEEECCCCceEEEEEECCC-CCCCCc
Confidence 66778889987543 35799999999988777665432 1259999999999999999999998763 356553
Q ss_pred CCCCeEEEEEEeCCCCCCcccC-CCCcccccCCCeeEEEEeEEEEecCC
Q 026478 82 QCKDKFLLLSVVAPDGATAKDI-GPDMFTKEDGKVVEEFKLRVVYIPAN 129 (238)
Q Consensus 82 ~~kdKFlVqs~~v~~~~~~~d~-~~~~f~~~~~~~i~~~kL~v~~~p~~ 129 (238)
..-|-+..-.+|+.....+- ...- ...-......+|++-|.|..
T Consensus 90 --Eslf~lnv~eIPp~~~~~~~~~~n~--~~~lqia~r~rIKlFyRP~~ 134 (221)
T 2co7_B 90 --ETLQWVCIKAVPPENEPSDTQAKGA--TLDLNLSINACDKLIFRPDA 134 (221)
T ss_dssp --CEEEEEEEEEECCC-------------CEEEEEEEEEEEEEEEECTT
T ss_pred --eEEEEEEeecCCCCcccccccccCc--ceeEEEEeeeeeeEEEeccc
Confidence 23455555555542110000 0000 00011345678888888775
No 15
>4ay0_A Chaperone protein CAF1M; amino acid motifs, bacterial capsules, bacterial proteins, gene expression regulation, molecular chaperones, binding; 1.52A {Yersinia pestis} PDB: 1p5v_A 1p5u_A 1z9s_A 2os7_A 3dos_A 3dpb_A 3dsn_A 4b0m_M 4az8_A 4ayf_A
Probab=91.46 E-value=4.8 Score=33.30 Aligned_cols=109 Identities=15% Similarity=0.209 Sum_probs=67.8
Q ss_pred eEEeCCeeeecccCCCceeEEEEEEcCCCCeEEEEEeecC-------CCcEEEeCCceeeCCCCEEEEEEEecccccCCC
Q 026478 7 VNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTN-------PKKYCVRPNTGIILPRTSCAVTVTMQAQKEAPP 79 (238)
Q Consensus 7 L~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~-------p~~Y~VrP~~G~I~P~~s~~V~V~lq~~~~~p~ 79 (238)
|.|.-..+.|+.. .-..+|+|+|.++.++.-...... ..-|.|.|+.-.|+||+...|.|...+. ..|.
T Consensus 14 v~l~~TRvIy~~~---~k~~sl~l~N~~~~p~LvQswv~~~~~~~~~~~pFivtPPl~Rl~p~~~q~lRI~~~~~-~LP~ 89 (218)
T 4ay0_A 14 VTIGESRIIYPLD---AAGVMVSVKNTQDYPVLIQSRIYDENKEKESEDPFVVTPPLFRLDAKQQNSLRIAQAGG-VFPR 89 (218)
T ss_dssp EEESCCEEEEETT---CSCEEEEEECCSSSCEEEEEEEECTTSCCCSSCSEEEESSEEEECTTCEEEEEEEECSC-CCCS
T ss_pred EEECceEEEECCC---CcEEEEEEEcCCCCCEEEEEEEecCCCCccccCCEEECCCeEEeCCCCceEEEEEecCC-CCCc
Confidence 5566667888653 235789999999988766654311 1239999999999999999999988764 2465
Q ss_pred CCCCCCeEEEEEEeCCCCCCcccCCCCcccccCCCeeEEEEeEEEEecCC
Q 026478 80 DFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYIPAN 129 (238)
Q Consensus 80 ~~~~kdKFlVqs~~v~~~~~~~d~~~~~f~~~~~~~i~~~kL~v~~~p~~ 129 (238)
|- .--|-+....+|+... +- ... -......+|++-|.|..
T Consensus 90 DR--ESlf~lnv~eIPp~~~--~~----~n~--lqia~r~rIKlFyRP~~ 129 (218)
T 4ay0_A 90 DK--ESLKWLCVKGIPPKDE--DI----WVD--VQFAINNCIKLLVRPNE 129 (218)
T ss_dssp SS--CEEEEEEEEEECC----------------------CEEEEEEECTT
T ss_pred Cc--EEEEEEEEEecCCCCc--cc----cce--eEEEEEEEEEEEEcCcc
Confidence 52 2346666666664321 10 110 12345678888888875
No 16
>2xg5_A PAPD, chaperone protein PAPD; chaperone, chaperone-surface active protein complex; HET: EC2 EC5; 2.00A {Escherichia coli} PDB: 1pdk_A 2uy6_A 2uy7_A 2j2z_A 2xg4_A* 2w07_A* 3me0_A* 1n0l_A 2wmp_A 3dpa_A 2j7l_A 1qpp_A 1qpx_A
Probab=91.16 E-value=5.6 Score=32.81 Aligned_cols=109 Identities=15% Similarity=0.199 Sum_probs=73.2
Q ss_pred eEEeCCeeeecccCCCceeEEEEEEcCCCC-eEEEEEeecC-------CCcEEEeCCceeeCCCCEEEEEEEeccc-ccC
Q 026478 7 VNIQPSELKFPFELKKQSSCSMQLTNKTDK-FVAFKVKTTN-------PKKYCVRPNTGIILPRTSCAVTVTMQAQ-KEA 77 (238)
Q Consensus 7 L~i~P~eL~F~~~~~~~~~~~l~L~N~s~~-~vaFKVKTT~-------p~~Y~VrP~~G~I~P~~s~~V~V~lq~~-~~~ 77 (238)
|.+++..+.|+... -..+|+|+|.++. ++.-.+.... ..-|.|.|+.-.|+||+...|.|...+. ...
T Consensus 2 v~l~~TRvIy~~~~---k~~sl~l~N~~~~~p~LvQsWi~~~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~~~~~l 78 (218)
T 2xg5_A 2 VSLDRTRAVFDGSE---KSMTLDISNDNKQLPYLAQAWIENENQEKIITGPVIATPPVQRLEPGAKSMVRLSTTPDISKL 78 (218)
T ss_dssp EEESCSEEEEETTS---SEEEEEEEECCSSSCEEEEEEEECTTSCEECSSSEEEECSEEEECTTCEEEEEEEECGGGGGS
T ss_pred cEeCceEEEEeCCC---CEEEEEEEcCCCCCcEEEEEEEecCCCCccccCCEEEcCCeEEECCCCceEEEEEecCCCCCC
Confidence 56777788887643 4679999999988 8777665432 2249999999999999999999998762 235
Q ss_pred CCCCCCCCeEEEEEEeCCCCCCcccCCCCcccccCCCeeEEEEeEEEEecCC
Q 026478 78 PPDFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYIPAN 129 (238)
Q Consensus 78 p~~~~~kdKFlVqs~~v~~~~~~~d~~~~~f~~~~~~~i~~~kL~v~~~p~~ 129 (238)
|.|- ..-|-+..-.+|+... + . ..-......+|++-|.|..
T Consensus 79 P~Dr--ESlf~lnv~eIPp~~~--~--~-----n~lqia~r~rIKlFyRP~~ 119 (218)
T 2xg5_A 79 PQDR--ESLFYFNLREIPPRSE--K--A-----NVLQIALQTKIKLFYRPAA 119 (218)
T ss_dssp CSSS--CEEEEEEEEEECCCCC--C--T-----TEEEEEEEEEEEEEEECGG
T ss_pred CCCc--eEEEEEEeecCCCCCC--C--C-----ceEEEEehheeeEEEcCcc
Confidence 6653 3345555555554211 1 0 0012346778999888774
No 17
>1l4i_A SFAE protein; periplasmic chaperone, immunoglobulin fold; 2.20A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1
Probab=90.44 E-value=6.3 Score=32.18 Aligned_cols=111 Identities=14% Similarity=0.184 Sum_probs=70.9
Q ss_pred eEEeCCeeeecccCCCceeEEEEEEcCCC-CeEEEEEeecC-----CCcEEEeCCceeeCCCCEEEEEEE-ecccccCCC
Q 026478 7 VNIQPSELKFPFELKKQSSCSMQLTNKTD-KFVAFKVKTTN-----PKKYCVRPNTGIILPRTSCAVTVT-MQAQKEAPP 79 (238)
Q Consensus 7 L~i~P~eL~F~~~~~~~~~~~l~L~N~s~-~~vaFKVKTT~-----p~~Y~VrP~~G~I~P~~s~~V~V~-lq~~~~~p~ 79 (238)
|.+++..+.|+.. .-..+|+|+|.++ .++.-.+.... ..-|.|.|+.-.|+||+...|.|. ... ...|.
T Consensus 2 v~l~~TRvIy~~~---~k~~sl~l~N~~~~~p~LvQsWv~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~~-~~lP~ 77 (206)
T 1l4i_A 2 VALGATRVIYPEG---QKQVQLAVTNNDDKSSYLIQSWIENAEGKKDARFVITPPLFSMQGKKENTLRIIDATN-GQMPE 77 (206)
T ss_dssp EEESCSEEEEETT---CSEEEEEEEECCTTCEEEEEEEEEETTSCBCSSEEEESSEEEEESSEEEEEEEEECCT-TCSCS
T ss_pred eEeCceEEEEeCC---CcEEEEEEEeCCCCccEEEEEEEecCCCCccCCEEEcCCeEEECCCCceEEEEEecCC-CCCCC
Confidence 5677778888764 2467999999986 78776665422 134999999999999999999998 754 23566
Q ss_pred CCCCCCeEEEEEEeCCCCCCcccCCCCcccccCCCeeEEEEeEEEEecCC
Q 026478 80 DFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYIPAN 129 (238)
Q Consensus 80 ~~~~kdKFlVqs~~v~~~~~~~d~~~~~f~~~~~~~i~~~kL~v~~~p~~ 129 (238)
|-..--.|-|..++-.+... .+ . ..-......+|++-|.|..
T Consensus 78 DrEslf~lnv~eIPp~~~~~-~~--~-----n~lqia~r~riKlFyRP~~ 119 (206)
T 1l4i_A 78 DRESLFWVNVKAIPAMDKAK-TG--E-----NYLQFAIVSRIKLLYRPQG 119 (206)
T ss_dssp SSCEEEEEEEEEEECCC----------------CCCEEEEEEEEEEECTT
T ss_pred CceEEEEEEeecCCCCcccc-cC--C-----ceEEEEhhheeeEEEeccc
Confidence 53333334444444322110 00 0 0112456788999888875
No 18
>3gfu_C Chaperone protein FAEE; immunoglobulin like fold, chaperone, fimbrium, immunoglobulin domain, periplasm, plasmid, cell adhesion; 1.99A {Escherichia coli} PDB: 3gew_B 3f65_A 3f6i_A 3f6l_A
Probab=90.26 E-value=7.1 Score=32.48 Aligned_cols=107 Identities=15% Similarity=0.204 Sum_probs=67.5
Q ss_pred eEEeCCeeeecccCCCceeEEEEEEcCCCC-eEEEEEeec--C----CCcEEEeCCceeeCCCCEEEEEEEecccccCCC
Q 026478 7 VNIQPSELKFPFELKKQSSCSMQLTNKTDK-FVAFKVKTT--N----PKKYCVRPNTGIILPRTSCAVTVTMQAQKEAPP 79 (238)
Q Consensus 7 L~i~P~eL~F~~~~~~~~~~~l~L~N~s~~-~vaFKVKTT--~----p~~Y~VrP~~G~I~P~~s~~V~V~lq~~~~~p~ 79 (238)
+.++...+.|+.. .-...|+|+|.++. ++.-.+... . ..-|.|.|+.-.|+||+...|.|..... ..|.
T Consensus 2 ~~l~~TRvIy~~~---~k~~sl~l~N~~~~~p~LvQsWid~~~~~~~~~pfivtPPlfRlep~~~q~lRIi~~~~-~LP~ 77 (224)
T 3gfu_C 2 LAVDQTRYIFRGD---KDALTITVTNNDKERTFGGQAWVDNIVEKDTRPTFVVTPSFFKVKPNGQQTLRIIMASD-HLPK 77 (224)
T ss_dssp EECSCSEEEEETT---SSCEEEEEEECCSSCCEEEEEEEEESSCCSCSCSEEEESSEEEECTTCEEEEEEEECSC-CCCS
T ss_pred ccccceEEEEeCC---CceEEEEEEeCCCCccEEEEEEEecCCCCcccCCEEEcCCeEEECCCCceEEEEEECCC-CCCC
Confidence 4455667888754 23579999999875 554443321 1 1249999999999999999999987653 2465
Q ss_pred CCCCCCeEEEEEEeCCCCCCcccCCCCcccccCCCeeEEEEeEEEEecCC
Q 026478 80 DFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYIPAN 129 (238)
Q Consensus 80 ~~~~kdKFlVqs~~v~~~~~~~d~~~~~f~~~~~~~i~~~kL~v~~~p~~ 129 (238)
|- ..-|-+..-.+|+... . ..-......+|++-|.|..
T Consensus 78 DR--ESlf~lnv~eIPp~~~-----~-----n~Lqiair~rIKLFyRP~~ 115 (224)
T 3gfu_C 78 DK--ESVYWLNLQDIPPALE-----G-----SGIAVALRTKLKLFYRPKA 115 (224)
T ss_dssp SS--CEEEEEEEEEECCCCS-----S-----SBCCEEEEEEEEEEEECGG
T ss_pred Cc--eEEEEEEeecCCCCCC-----C-----CeEEEEEEEEeeEEEcccc
Confidence 52 2344444455554211 0 0113456778888888764
No 19
>1yew_A Particulate methane monooxygenase, B subunit; membrane protein, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus} PDB: 3rgb_A
Probab=90.19 E-value=1.8 Score=38.65 Aligned_cols=68 Identities=15% Similarity=0.233 Sum_probs=51.1
Q ss_pred CceEEeCCeeeecccCCCceeEEEEEEcCCCCeEEEEEeecCCCcE----------------------EEeCCceeeCCC
Q 026478 5 DLVNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKY----------------------CVRPNTGIILPR 62 (238)
Q Consensus 5 ~lL~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y----------------------~VrP~~G~I~P~ 62 (238)
..+.++...-.|.-| ++..+-+++++|.++.+|-..==+|+.-+| .|.|+.- |.||
T Consensus 248 ~~V~~~v~~A~Y~vp-gR~l~~~~~VtN~g~~pvrlgeF~tA~vrFln~~~~~~~~~~P~~lla~~gL~vsd~~p-I~PG 325 (382)
T 1yew_A 248 PTVSVKVEDATYRVP-GRAMRMKLTITNHGNSPIRLGEFYTASVRFLDSDVYKDTTGYPEDLLAEDGLSVSDNSP-LAPG 325 (382)
T ss_dssp CSEEEEEEEEEEESS-CSEEEEEEEEEECSSSCEEEEEEECSSCEEECTTTCCCCSCCCGGGEETTCEEESCCSC-BCTT
T ss_pred CceEEEeeccEEecC-CcEEEEEEEEEcCCCCceEeeeEEeccEEEeCCcccccCCCChHHhhccCCceeCCCCC-cCCC
Confidence 345555555666554 688999999999999999988767777666 3344433 8999
Q ss_pred CEEEEEEEeccc
Q 026478 63 TSCAVTVTMQAQ 74 (238)
Q Consensus 63 ~s~~V~V~lq~~ 74 (238)
++.+|.|..|.-
T Consensus 326 ETr~~~v~a~da 337 (382)
T 1yew_A 326 ETRTVDVTASDA 337 (382)
T ss_dssp CEEEEEEEEECH
T ss_pred ceeEEEEEeehH
Confidence 999999998753
No 20
>4djm_A DRAB; chaperone, PILI; 2.52A {Escherichia coli}
Probab=90.14 E-value=2.6 Score=35.50 Aligned_cols=84 Identities=14% Similarity=0.187 Sum_probs=59.2
Q ss_pred eEEeCCeeeecccCCCceeEEEEEEcCCCCeEEEEEeecC-----CCcEEEeCCceeeCCCCEEEEEEEecccccCCCCC
Q 026478 7 VNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTN-----PKKYCVRPNTGIILPRTSCAVTVTMQAQKEAPPDF 81 (238)
Q Consensus 7 L~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~-----p~~Y~VrP~~G~I~P~~s~~V~V~lq~~~~~p~~~ 81 (238)
|.|.+..+.|+..- -..+|+|+|.++.++.-.+.... ..-|.|.|+.-.|+||+...|.|..... ..|.|-
T Consensus 24 v~l~~TRvIy~~~~---k~~sl~l~N~~~~P~LvQsWv~~~~~~~~~pfivtPPlfRlep~~~q~lRIi~~~~-~LP~DR 99 (239)
T 4djm_A 24 LHLGATRVVYNPAS---SGETLTVINDQDYPMLVQSEVLSEDQKSPAPFVVTPPLFRLDGQQSSRLRIVRTGG-EFPPDR 99 (239)
T ss_dssp CEESCSEEEECTTS---SCEEEEEEECSSSCEEEEEEEECTTSSSBCSEEEESSEEEECTTEEEEEEEEECSC-CCCSSS
T ss_pred EEEcceEEEEeCCC---CEEEEEEEeCCCCcEEEEEEEEcCCCCccCCEEEcCCeEEECCCCceEEEEEECCC-CCCCCc
Confidence 66788888987542 35799999999888765554321 2249999999999999999999987654 246552
Q ss_pred CCCCeEEEEEEeCCC
Q 026478 82 QCKDKFLLLSVVAPD 96 (238)
Q Consensus 82 ~~kdKFlVqs~~v~~ 96 (238)
..-|-+..-.+|+
T Consensus 100 --ESlf~lnv~eIPp 112 (239)
T 4djm_A 100 --ESLQWICVKGIPP 112 (239)
T ss_dssp --CEEEEEEEEEECC
T ss_pred --eEEEEEEEEecCC
Confidence 2344444455554
No 21
>1klf_A FIMC chaperone, chaperone protein FIMC; adhesin-chaperone complex, mannose-bound, chaperone/adhesin complex complex; HET: MAN; 2.79A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1 PDB: 1kiu_A* 3rfz_C 1qun_A 1bf8_A 1ze3_C 3bwu_C 3jwn_C
Probab=89.86 E-value=7.1 Score=31.87 Aligned_cols=111 Identities=14% Similarity=0.211 Sum_probs=72.6
Q ss_pred eEEeCCeeeecccCCCceeEEEEEEcCCCC-eEEEEEeecC-----CCcEEEeCCceeeCCCCEEEEEEEe-cccccCCC
Q 026478 7 VNIQPSELKFPFELKKQSSCSMQLTNKTDK-FVAFKVKTTN-----PKKYCVRPNTGIILPRTSCAVTVTM-QAQKEAPP 79 (238)
Q Consensus 7 L~i~P~eL~F~~~~~~~~~~~l~L~N~s~~-~vaFKVKTT~-----p~~Y~VrP~~G~I~P~~s~~V~V~l-q~~~~~p~ 79 (238)
|.+++..+.|+... -..+|+|+|.++. ++.-.+.... ..-|.|.|+.-.|+||+...|.|.. .+. ..|.
T Consensus 2 v~l~~TRvIy~~~~---k~~sl~l~N~~~~~p~LvQsWi~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~~~-~lP~ 77 (205)
T 1klf_A 2 VALGATRVIYPAGQ---KQVQLAVTNNDENSTYLIQSWVENADGVKDGRFIVTPPLFAMKGKKENTLRILDATNN-QLPQ 77 (205)
T ss_dssp EEESCSEEEEETTC---SEEEEEEEECCSSCCEEEEEEEEETTSCCCSSEEEESSEEEECSSEEEEEEEEECSCS-CSCS
T ss_pred eEecceEEEEeCCC---cEEEEEEEcCCCCCcEEEEEEEecCCCCccCCEEEcCCeEEECCCCceEEEEEecCCC-CCCC
Confidence 56777788887642 4679999999987 8776665422 2359999999999999999999988 652 3565
Q ss_pred CCCCCCeEEEEEEeCCCCCCcccCCCCcccccCCCeeEEEEeEEEEecCC
Q 026478 80 DFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYIPAN 129 (238)
Q Consensus 80 ~~~~kdKFlVqs~~v~~~~~~~d~~~~~f~~~~~~~i~~~kL~v~~~p~~ 129 (238)
|- ..-|-+..-.+|+.....+- .. .-......+|++-|.|..
T Consensus 78 Dr--Eslf~lnv~eIPp~~~~~~~-~n-----~lqia~r~riKlFyRP~~ 119 (205)
T 1klf_A 78 DR--ESLFWMNVKAIPSMDKSKLT-EN-----TLQLAIISRIKLYYRPAK 119 (205)
T ss_dssp SS--CEEEEEEEEEECCCCTTSTT-SC-----EEEEEEEEEEEEEEECTT
T ss_pred Cc--eEEEEEEeEecCCCCccccC-Cc-----eEEEEeeeeeeEEEcccc
Confidence 53 23455555555542110000 00 011345778888888875
No 22
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=88.56 E-value=1.1 Score=31.38 Aligned_cols=38 Identities=21% Similarity=0.328 Sum_probs=32.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026478 171 EKSSEAWSMISKLTEEKTSAMQQNQKLRQELEFVRKEI 208 (238)
Q Consensus 171 ~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~~~ 208 (238)
.-+.+|.++|..|+++...+.++.+.|+.+...|++..
T Consensus 40 ~iL~kA~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L 77 (80)
T 1nlw_A 40 SLLTKAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQL 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34679999999999999999999999998888887654
No 23
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=88.24 E-value=1 Score=31.73 Aligned_cols=37 Identities=27% Similarity=0.255 Sum_probs=28.2
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 167 EVPKEKSSEAWSMISKLTEEKTSAMQQNQKLRQELEF 203 (238)
Q Consensus 167 ~~~~~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~ 203 (238)
+.|++|...|.+.|.-|+.|...+.++|..|.++...
T Consensus 9 eqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e 45 (81)
T 2jee_A 9 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQN 45 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888888888888888888888888777665554
No 24
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=84.99 E-value=2.7 Score=29.24 Aligned_cols=38 Identities=11% Similarity=0.198 Sum_probs=31.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026478 172 KSSEAWSMISKLTEEKTSAMQQNQKLRQELEFVRKEIS 209 (238)
Q Consensus 172 k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~~~~ 209 (238)
-+..|..+|..|+++...+..+.+.|+++...|+.+..
T Consensus 41 iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~ 78 (83)
T 1nkp_B 41 ILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVR 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688899999999888888888888888888876643
No 25
>2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus}
Probab=84.40 E-value=5 Score=29.60 Aligned_cols=51 Identities=12% Similarity=0.211 Sum_probs=39.2
Q ss_pred eeEEEEEEcCCCCeEEEEEeecCCCcEEEe-CCceeeCCCCEEEEEEEeccc
Q 026478 24 SSCSMQLTNKTDKFVAFKVKTTNPKKYCVR-PNTGIILPRTSCAVTVTMQAQ 74 (238)
Q Consensus 24 ~~~~l~L~N~s~~~vaFKVKTT~p~~Y~Vr-P~~G~I~P~~s~~V~V~lq~~ 74 (238)
-..+|+|.|.+.++..|.++......+.+. |..=.|+||+...+.|.+...
T Consensus 33 N~Ytlki~Nkt~~~~~~~l~v~g~~~l~~~g~~~i~v~~g~~~~~~v~v~~~ 84 (118)
T 2r39_A 33 NTYTLKVINKTQQVQEYNLDVKGLNDVSWYGKQTIQVEPGEVLNLPMSLGAD 84 (118)
T ss_dssp EEEEEEEEECSSSCEEEEEEEESCSSCEEESCCEEEECTTCEEEEEEEEEEC
T ss_pred EEEEEEEEECCCCCEEEEEEEeCCcccEEeCCCcEEECCCCEEEEEEEEEEC
Confidence 458999999999999999988775446543 554578899988887776543
No 26
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=84.03 E-value=0.71 Score=31.62 Aligned_cols=33 Identities=21% Similarity=0.255 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 173 SSEAWSMISKLTEEKTSAMQQNQKLRQELEFVR 205 (238)
Q Consensus 173 ~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~ 205 (238)
+.++...+..|+.+...+..+|..|+.++..|+
T Consensus 31 i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~ 63 (70)
T 1gd2_E 31 LKALETQVVTLKELHSSTTLENDQLRQKVRQLE 63 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555555443
No 27
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=83.73 E-value=1.6 Score=30.72 Aligned_cols=36 Identities=17% Similarity=0.255 Sum_probs=25.2
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 167 EVPKEKSSEAWSMISKLTEEKTSAMQQNQKLRQELE 202 (238)
Q Consensus 167 ~~~~~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~ 202 (238)
++|+++...+.++...++.++..+.++|++|++|..
T Consensus 30 eELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~ 65 (81)
T 2jee_A 30 EELKEKNNSLSQEVQNAQHQREELERENNHLKEQQN 65 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 356666666666666666666678888888887765
No 28
>3rfr_A PMOB; membrane, oxidoreductase; 2.68A {Methylocystis SP} PDB: 3chx_A
Probab=83.15 E-value=4.9 Score=36.35 Aligned_cols=66 Identities=15% Similarity=0.193 Sum_probs=50.1
Q ss_pred ceEEeCCeeeecccCCCceeEEEEEEcCCCCeEEEEEeecCCCcEEE---------------------eCCceeeCCCCE
Q 026478 6 LVNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCV---------------------RPNTGIILPRTS 64 (238)
Q Consensus 6 lL~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~V---------------------rP~~G~I~P~~s 64 (238)
.+.++-..-.|.-| ++..+-+|+++|.++++|-+.==+|+.-+|.= .|+ -|.||++
T Consensus 283 ~V~~~v~~A~Y~vp-gR~l~~~~~VtN~g~~pvrlgeF~tA~vrFlnp~v~~~~~~~p~~l~a~~GL~s~~--pI~PGET 359 (419)
T 3rfr_A 283 QVTTELNGGVYKVP-GRELTINVKVKNGTSQPVRLGEYTAAGLRFLNPTVFTQKPDFPDYLLADRGLSNDD--VIAPGES 359 (419)
T ss_dssp CCEEEEEEEEEESS-SSEEEEEEEEECCSSSCBEEEEEECSSCEEECTTTCSSCCCCCTTTEESCCCCCCC--CBCTTCE
T ss_pred ceEEEEeceEEecC-CcEEEEEEEEecCCCCceEEeeEEEccEEEeCcccccCCCCCchhhhhccCCCCCC--CcCCCcc
Confidence 34555555667655 67899999999999999988866777766651 233 5999999
Q ss_pred EEEEEEeccc
Q 026478 65 CAVTVTMQAQ 74 (238)
Q Consensus 65 ~~V~V~lq~~ 74 (238)
.+|+|..|.-
T Consensus 360 rt~~V~a~da 369 (419)
T 3rfr_A 360 KEIVVKIQDA 369 (419)
T ss_dssp EEEEEEEECH
T ss_pred eEEEEEeehH
Confidence 9999998753
No 29
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=81.57 E-value=3.6 Score=26.96 Aligned_cols=34 Identities=12% Similarity=0.090 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 173 SSEAWSMISKLTEEKTSAMQQNQKLRQELEFVRK 206 (238)
Q Consensus 173 ~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~ 206 (238)
..++...+..|+.+...|..+...|++|+..|+.
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666666666666666666665544
No 30
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=80.95 E-value=4.6 Score=23.27 Aligned_cols=28 Identities=4% Similarity=0.033 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026478 181 SKLTEEKTSAMQQNQKLRQELEFVRKEI 208 (238)
Q Consensus 181 ~~L~eE~~~~~~q~~~L~~e~~~l~~~~ 208 (238)
++|.+-...+..+|..|++|+.+||...
T Consensus 3 nQLEdKvEeLl~~~~~Le~EV~RLk~lL 30 (33)
T 3c3g_A 3 KXIEXKLXEIXSKXYHXENXLARIKXLL 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4566666678888999999999887643
No 31
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=80.65 E-value=5.1 Score=23.23 Aligned_cols=29 Identities=14% Similarity=0.275 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026478 180 ISKLTEEKTSAMQQNQKLRQELEFVRKEI 208 (238)
Q Consensus 180 i~~L~eE~~~~~~q~~~L~~e~~~l~~~~ 208 (238)
+++|.+-...+..+|..|++|..+||...
T Consensus 3 MnQLE~kVEeLl~~n~~Le~eV~rLk~ll 31 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXEVXRLKXLV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 34566666678888889999998887654
No 32
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=80.21 E-value=4 Score=27.07 Aligned_cols=35 Identities=9% Similarity=0.268 Sum_probs=22.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 172 KSSEAWSMISKLTEEKTSAMQQNQKLRQELEFVRK 206 (238)
Q Consensus 172 k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~ 206 (238)
...++..++..|+.++..|..+...|+.|...|+.
T Consensus 24 ~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ 58 (63)
T 1ci6_A 24 EQEALTGECKELEKKNEALKERADSLAKEIQYLKD 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666777766666667777776666643
No 33
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=80.12 E-value=3.1 Score=25.37 Aligned_cols=32 Identities=22% Similarity=0.221 Sum_probs=19.6
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 168 VPKEKSSEAWSMISKLTEEKTSAMQQNQKLRQ 199 (238)
Q Consensus 168 ~~~~k~~e~~~~i~~L~eE~~~~~~q~~~L~~ 199 (238)
+|+++.+++..-.+.|.+-.+-+..||..|+|
T Consensus 7 eLE~r~k~le~~naeLEervstLq~EN~mLRq 38 (42)
T 2oqq_A 7 ELENRVKDLENKNSELEERLSTLQNENQMLRH 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 45566666666666666666656666665554
No 34
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=80.10 E-value=3 Score=24.08 Aligned_cols=27 Identities=19% Similarity=0.316 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026478 182 KLTEEKTSAMQQNQKLRQELEFVRKEI 208 (238)
Q Consensus 182 ~L~eE~~~~~~q~~~L~~e~~~l~~~~ 208 (238)
+|.+....+..+|..|++|..+|+.-.
T Consensus 4 QLE~kVEeLl~~n~~Le~EV~RLk~Ll 30 (33)
T 3m48_A 4 QLEAKVEELLSKNWNLENEVARLKKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 455556677888888999998887643
No 35
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=79.82 E-value=5.2 Score=23.16 Aligned_cols=29 Identities=7% Similarity=0.142 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026478 180 ISKLTEEKTSAMQQNQKLRQELEFVRKEI 208 (238)
Q Consensus 180 i~~L~eE~~~~~~q~~~L~~e~~~l~~~~ 208 (238)
+++|.+-...+..++..|++|..+||...
T Consensus 3 MnQLEdKVEeLl~~~~~Le~EV~RLk~ll 31 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYHXENEXARIXKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 34566666678888899999999887654
No 36
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=79.55 E-value=4.4 Score=26.79 Aligned_cols=34 Identities=18% Similarity=0.157 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 173 SSEAWSMISKLTEEKTSAMQQNQKLRQELEFVRK 206 (238)
Q Consensus 173 ~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~ 206 (238)
..++.+++..|+.+...|..+...|++|+..|+.
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~ 58 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLKEKEKLEF 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555566666655566666666666555543
No 37
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=77.33 E-value=6 Score=27.98 Aligned_cols=36 Identities=17% Similarity=0.226 Sum_probs=23.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 172 KSSEAWSMISKLTEEKTSAMQQNQKLRQELEFVRKE 207 (238)
Q Consensus 172 k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~~ 207 (238)
=|.+|..+|..|+++...+..+.+.|+++...|++.
T Consensus 46 iL~~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~r 81 (88)
T 1nkp_A 46 ILKKATAYILSVQAEEQKLISEEDLLRKRREQLKHK 81 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888888877776666666665555555443
No 38
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=76.92 E-value=6.1 Score=25.34 Aligned_cols=28 Identities=14% Similarity=0.153 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 180 ISKLTEEKTSAMQQNQKLRQELEFVRKE 207 (238)
Q Consensus 180 i~~L~eE~~~~~~q~~~L~~e~~~l~~~ 207 (238)
+.+|+.|+..++.+++.|+++...|+++
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555566666666655544
No 39
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=76.54 E-value=5.3 Score=28.39 Aligned_cols=38 Identities=21% Similarity=0.276 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 026478 173 SSEAWSMISKLTEEKTSAMQQNQKLRQELEFVRKEISK 210 (238)
Q Consensus 173 ~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~~~~~ 210 (238)
-.+....+..|+.|...|..+...|++|+..|+.....
T Consensus 38 ~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~ 75 (87)
T 1hjb_A 38 NLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQ 75 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677888888888888888888888888766543
No 40
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=75.59 E-value=5.3 Score=23.17 Aligned_cols=28 Identities=11% Similarity=0.288 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026478 181 SKLTEEKTSAMQQNQKLRQELEFVRKEI 208 (238)
Q Consensus 181 ~~L~eE~~~~~~q~~~L~~e~~~l~~~~ 208 (238)
++|.+....+..+|..|++|+.+|+.-.
T Consensus 4 ~QLEdKVEeLl~~n~~Le~EV~RLk~LL 31 (34)
T 1uo4_A 4 KQIEDKGEEILSKLYHIENELARIKKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4566666678888999999999887643
No 41
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=75.32 E-value=3.5 Score=23.16 Aligned_cols=25 Identities=24% Similarity=0.329 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 182 KLTEEKTSAMQQNQKLRQELEFVRK 206 (238)
Q Consensus 182 ~L~eE~~~~~~q~~~L~~e~~~l~~ 206 (238)
+|+||...+..-.++||+.+++|..
T Consensus 3 rlee~~r~l~~ivq~lq~r~drle~ 27 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLEE 27 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444555555665544
No 42
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=74.56 E-value=2.9 Score=27.52 Aligned_cols=30 Identities=10% Similarity=0.177 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 175 EAWSMISKLTEEKTSAMQQNQKLRQELEFV 204 (238)
Q Consensus 175 e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l 204 (238)
++...+..|+.+...|..+...|++|+..|
T Consensus 26 ~Le~~v~~L~~~n~~L~~~v~~L~~e~~~L 55 (62)
T 1jnm_A 26 RLEEKVKTLKAQNSELASTANMLREQVAQL 55 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444433
No 43
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=73.38 E-value=7.7 Score=26.94 Aligned_cols=33 Identities=21% Similarity=0.152 Sum_probs=26.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 172 KSSEAWSMISKLTEEKTSAMQQNQKLRQELEFV 204 (238)
Q Consensus 172 k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l 204 (238)
=|.+|..+|..|+++...+.+++..|+.++...
T Consensus 44 IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~~ 76 (82)
T 1am9_A 44 VLRKAIDYIRFLQHSNQKLKQENLSLRTAVHKS 76 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456889999999999888888888887766543
No 44
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=73.33 E-value=5.7 Score=23.05 Aligned_cols=28 Identities=11% Similarity=0.321 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026478 181 SKLTEEKTSAMQQNQKLRQELEFVRKEI 208 (238)
Q Consensus 181 ~~L~eE~~~~~~q~~~L~~e~~~l~~~~ 208 (238)
++|.+-...+..++..|++|+.+|+...
T Consensus 4 nQLEdKvEeLl~~~~~L~~EV~RLk~lL 31 (34)
T 2bni_A 4 KQIEDKLEEILSKGHHICNELARIKKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHccHHHHHHHHHHHHHh
Confidence 4556656677888999999999987643
No 45
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=73.13 E-value=5.7 Score=23.32 Aligned_cols=27 Identities=22% Similarity=0.231 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 181 SKLTEEKTSAMQQNQKLRQELEFVRKE 207 (238)
Q Consensus 181 ~~L~eE~~~~~~q~~~L~~e~~~l~~~ 207 (238)
++|.+....+..++..|++|..+||..
T Consensus 4 nQLE~kVEeLl~~~~~Le~EV~RL~~l 30 (36)
T 1kd8_A 4 KQLEAEVEEIESEVWHLENEVARLEKE 30 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 345555556677777788888877654
No 46
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=72.83 E-value=6.6 Score=25.03 Aligned_cols=34 Identities=29% Similarity=0.219 Sum_probs=18.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 171 EKSSEAWSMISKLTEEKTSAMQQNQKLRQELEFV 204 (238)
Q Consensus 171 ~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l 204 (238)
.++..+.+.-.+|.+-++..++|...|+++++.|
T Consensus 16 ~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 16 ARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444444444555556666666666666654
No 47
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=72.79 E-value=8.8 Score=22.49 Aligned_cols=28 Identities=11% Similarity=0.152 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026478 181 SKLTEEKTSAMQQNQKLRQELEFVRKEI 208 (238)
Q Consensus 181 ~~L~eE~~~~~~q~~~L~~e~~~l~~~~ 208 (238)
++|++-...+..++..|++|..+||...
T Consensus 4 nQLE~KVEeLl~~~~~Le~eV~RLk~ll 31 (36)
T 1kd8_B 4 KQLKAKVEELKSKLWHLKNKVARLKKKN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 4455555567777888888888887653
No 48
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=72.72 E-value=2.1 Score=36.32 Aligned_cols=39 Identities=26% Similarity=0.173 Sum_probs=27.8
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 168 VPKEKSSEAWSMISKLTEEKTSAMQQNQKLRQELEFVRK 206 (238)
Q Consensus 168 ~~~~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~ 206 (238)
+++.++..+.+...+|.++++.+++|..+|++|++.|+.
T Consensus 58 eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 58 QLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344555555666666777888888888888888888754
No 49
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=72.57 E-value=7.4 Score=27.01 Aligned_cols=34 Identities=24% Similarity=0.274 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 174 SEAWSMISKLTEEKTSAMQQNQKLRQELEFVRKE 207 (238)
Q Consensus 174 ~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~~ 207 (238)
.+....+..|+.|...|..+...|++|+..|+..
T Consensus 39 ~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~l 72 (78)
T 1gu4_A 39 LETQHKVLELTAENERLQKKVEQLSRELSTLRNL 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555566777777777777777777887777654
No 50
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=72.51 E-value=5.6 Score=27.07 Aligned_cols=37 Identities=19% Similarity=0.171 Sum_probs=28.0
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 168 VPKEKSSEAWSMISKLTEEKTSAMQQNQKLRQELEFV 204 (238)
Q Consensus 168 ~~~~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l 204 (238)
+|+.++.++......|..|...|+.++..|+.|+..+
T Consensus 33 ~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~l 69 (70)
T 1gd2_E 33 ALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRIL 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5667777777777777777778888888888777654
No 51
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=72.05 E-value=12 Score=24.08 Aligned_cols=28 Identities=25% Similarity=0.359 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 175 EAWSMISKLTEEKTSAMQQNQKLRQELE 202 (238)
Q Consensus 175 e~~~~i~~L~eE~~~~~~q~~~L~~e~~ 202 (238)
.+.+.+-.|++|.+.+.++++++++-++
T Consensus 7 SlVDtVYaLkDqV~eL~qe~k~m~k~lE 34 (56)
T 2w6b_A 7 SLVDTVYALKDEVQELRQDNKKMKKSLE 34 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677788888888888888888865555
No 52
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=71.79 E-value=10 Score=27.73 Aligned_cols=38 Identities=32% Similarity=0.232 Sum_probs=27.4
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 166 LEVPKEKSSEAWSMISKLTEEKTSAMQQNQKLRQELEF 203 (238)
Q Consensus 166 ~~~~~~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~ 203 (238)
+.++++|+++|+-..++|..|++++.=|++.|++.++.
T Consensus 4 L~EvEEKyrKAMVsnAQLDNEKsal~YqVdlLKD~LEe 41 (103)
T 4h22_A 4 LAEVEEKYKKAMVSNAQLDNEKTNFMYQVDTLKDMLLE 41 (103)
T ss_dssp ----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 34677888888888888888888888888888766553
No 53
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=71.10 E-value=5.1 Score=27.62 Aligned_cols=29 Identities=14% Similarity=0.174 Sum_probs=20.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 172 KSSEAWSMISKLTEEKTSAMQQNQKLRQE 200 (238)
Q Consensus 172 k~~e~~~~i~~L~eE~~~~~~q~~~L~~e 200 (238)
-|..|..+|..|+++...+.++++.|+++
T Consensus 51 iL~~Ai~YI~~L~~~~~~L~~e~~~L~~~ 79 (80)
T 1hlo_A 51 ILDKATEYIQYMRRKNHTHQQDIDDLKRQ 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45688889999988876666666666543
No 54
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=70.37 E-value=8 Score=25.37 Aligned_cols=35 Identities=17% Similarity=0.218 Sum_probs=16.3
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 168 VPKEKSSEAWSMISKLTEEKTSAMQQNQKLRQELE 202 (238)
Q Consensus 168 ~~~~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~ 202 (238)
++|..+.-..+.|..|..=.+.+.+|.+.+|.++.
T Consensus 17 evK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq 51 (63)
T 2w6a_A 17 ELKKALATSEAKVQQLMKVNSSLSDELRKLQREIH 51 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHH
Confidence 44545555555555554444444444444444333
No 55
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=70.34 E-value=4.6 Score=26.83 Aligned_cols=32 Identities=16% Similarity=0.308 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026478 177 WSMISKLTEEKTSAMQQNQKLRQELEFVRKEI 208 (238)
Q Consensus 177 ~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~~~ 208 (238)
.+.+..|..+...|..+|..|..++..|+...
T Consensus 29 ~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 29 LQRMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666667777777777777776543
No 56
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=69.98 E-value=7.8 Score=28.95 Aligned_cols=30 Identities=27% Similarity=0.316 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 178 SMISKLTEEKTSAMQQNQKLRQELEFVRKE 207 (238)
Q Consensus 178 ~~i~~L~eE~~~~~~q~~~L~~e~~~l~~~ 207 (238)
..+..|++|+..+.++.+..-.|+++||+.
T Consensus 71 ~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~ 100 (121)
T 3mq7_A 71 KKVEELEGEITTLNHKLQDASAEVERLRRE 100 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 346677777776666666666667777764
No 57
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=69.89 E-value=12 Score=21.54 Aligned_cols=28 Identities=11% Similarity=0.075 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026478 181 SKLTEEKTSAMQQNQKLRQELEFVRKEI 208 (238)
Q Consensus 181 ~~L~eE~~~~~~q~~~L~~e~~~l~~~~ 208 (238)
++|.+-...+..++..|.+|..+|+...
T Consensus 3 nQLEdKVEell~~~~~le~EV~Rl~~ll 30 (33)
T 2wq1_A 3 KQLEDKIEENTSKIYHNTNEIARNTKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 3455555566777888888888887543
No 58
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=69.45 E-value=12 Score=20.79 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 180 ISKLTEEKTSAMQQNQKLRQELEFV 204 (238)
Q Consensus 180 i~~L~eE~~~~~~q~~~L~~e~~~l 204 (238)
|..|++|...+..|...|+=|...|
T Consensus 4 iaalkqeiaalkkeiaalkfeiaal 28 (33)
T 4dzn_A 4 IAALKQEIAALKKEIAALKFEIAAL 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444
No 59
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=68.45 E-value=3.8 Score=26.45 Aligned_cols=30 Identities=20% Similarity=0.261 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 177 WSMISKLTEEKTSAMQQNQKLRQELEFVRK 206 (238)
Q Consensus 177 ~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~ 206 (238)
.+++..|..+...|..+|..|+.++..|+.
T Consensus 21 k~~~~~LE~~v~~L~~eN~~L~~~~~~L~~ 50 (55)
T 1dh3_A 21 KEYVKSLENRVAVLENQNKTLIEELKALKD 50 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666677777777777776654
No 60
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=68.40 E-value=10 Score=24.36 Aligned_cols=31 Identities=10% Similarity=0.147 Sum_probs=25.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 171 EKSSEAWSMISKLTEEKTSAMQQNQKLRQEL 201 (238)
Q Consensus 171 ~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~ 201 (238)
..+.++...+..|+.|...|..|+..|++++
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3467888888999999999999999888754
No 61
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=68.38 E-value=12 Score=24.65 Aligned_cols=32 Identities=6% Similarity=0.123 Sum_probs=25.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 171 EKSSEAWSMISKLTEEKTSAMQQNQKLRQELE 202 (238)
Q Consensus 171 ~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~ 202 (238)
+.+.++..++..|+.|...|..+...|++++.
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45678888888888888889999988887653
No 62
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=68.18 E-value=8.2 Score=27.25 Aligned_cols=35 Identities=17% Similarity=0.156 Sum_probs=29.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 171 EKSSEAWSMISKLTEEKTSAMQQNQKLRQELEFVR 205 (238)
Q Consensus 171 ~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~ 205 (238)
+-...+..+..+|..+...+.++|+.|++++..|+
T Consensus 52 ~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 52 AYILSVQAEEQKLISEEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34568888888888888899999999999988874
No 63
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=68.13 E-value=8.2 Score=24.96 Aligned_cols=33 Identities=6% Similarity=0.245 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 174 SEAWSMISKLTEEKTSAMQQNQKLRQELEFVRK 206 (238)
Q Consensus 174 ~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~ 206 (238)
.+.++.+..+.++...+.+||..|++++..|+.
T Consensus 23 ~EVD~FLd~v~~~~~~l~~e~~~L~~~~~~l~~ 55 (57)
T 2wuj_A 23 DEVNEFLAQVRKDYEIVLRKKTELEAKVNELDE 55 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 466666777777777778888888888776643
No 64
>3zy7_A AP-1 complex subunit gamma-1; endocytosis, protein design, computational design; 1.09A {Mus musculus} PDB: 2a7b_A 1gyv_A 1gyw_A
Probab=67.98 E-value=7.3 Score=29.16 Aligned_cols=82 Identities=12% Similarity=0.177 Sum_probs=48.4
Q ss_pred ceeEEEEEEcCCCCe-EEEEEeecCCCcEEEe--CCce-eeCC--CCEEEEEEEecccccCCCCCCCCCeEEEEEEeCCC
Q 026478 23 QSSCSMQLTNKTDKF-VAFKVKTTNPKKYCVR--PNTG-IILP--RTSCAVTVTMQAQKEAPPDFQCKDKFLLLSVVAPD 96 (238)
Q Consensus 23 ~~~~~l~L~N~s~~~-vaFKVKTT~p~~Y~Vr--P~~G-~I~P--~~s~~V~V~lq~~~~~p~~~~~kdKFlVqs~~v~~ 96 (238)
...-.++.+|.+..+ --|.+..-.|+-|.++ |.+| .|.| +..++=.+.+.... ....+=|+.|.+..-..
T Consensus 30 ~~~i~~~~~N~s~~~it~f~fqaAVPKs~kL~L~p~Sg~~l~p~~~~~itQ~l~i~n~~----~~~lklR~klsY~~~g~ 105 (122)
T 3zy7_A 30 VTVITIQASNSTELDMTDFVFQAAVPKTFQLQLLSPSSSVVPAFNTGTITQVIKVLNPQ----KQQLRMRIKLTFNWNGY 105 (122)
T ss_dssp EEEEEEEEEECSSSCBEEEEEEEECCTTSEEEECCCSCSCBCGGGSCCEEEEEEEECTT----CCCCCEEEEEEEEETTE
T ss_pred eEEEEEEEEECCCCccccEEEEEEcCcccEEEecCCCCCccCCCCCCCEEEEEEEECCC----CCCEEEEEEEEEEECCE
Confidence 356677788988644 4678888888876665 7777 6888 55544444333221 12345666666654332
Q ss_pred C----CCcccCCCCcc
Q 026478 97 G----ATAKDIGPDMF 108 (238)
Q Consensus 97 ~----~~~~d~~~~~f 108 (238)
. .+..+++.+.|
T Consensus 106 ~~~E~~~v~~fp~~~~ 121 (122)
T 3zy7_A 106 KVQSEAEVNNFPPQSW 121 (122)
T ss_dssp EEEEEEEECCCCGGGT
T ss_pred EEEEEEEECCCChhhC
Confidence 1 12335666677
No 65
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=67.69 E-value=9 Score=22.17 Aligned_cols=28 Identities=14% Similarity=0.220 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026478 181 SKLTEEKTSAMQQNQKLRQELEFVRKEI 208 (238)
Q Consensus 181 ~~L~eE~~~~~~q~~~L~~e~~~l~~~~ 208 (238)
++|.+-...+..+|..|.+|..+|+...
T Consensus 4 nQLEdkVEeLl~~~~~Le~eV~RL~~ll 31 (34)
T 2hy6_A 4 KQLADAVEELASANYHLANAVARLAKAV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 3455555567777888888888887643
No 66
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=65.68 E-value=8.2 Score=25.16 Aligned_cols=32 Identities=19% Similarity=0.291 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 176 AWSMISKLTEEKTSAMQQNQKLRQELEFVRKE 207 (238)
Q Consensus 176 ~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~~ 207 (238)
-.+.+..|+++...+..+|..|+.++..|+..
T Consensus 20 Kk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e 51 (61)
T 1t2k_D 20 RKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNE 51 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777777777777777777777777654
No 67
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=65.65 E-value=16 Score=21.16 Aligned_cols=27 Identities=15% Similarity=0.096 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 181 SKLTEEKTSAMQQNQKLRQELEFVRKE 207 (238)
Q Consensus 181 ~~L~eE~~~~~~q~~~L~~e~~~l~~~ 207 (238)
++|.+-...+..++..|.+|+.+|+..
T Consensus 4 nQledKvEel~~~~~~l~nEv~Rl~~l 30 (34)
T 2r2v_A 4 KQVADKLEEVASKLYHNANELARVAKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 344444455677788888888888764
No 68
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=64.48 E-value=12 Score=20.81 Aligned_cols=26 Identities=27% Similarity=0.400 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 180 ISKLTEEKTSAMQQNQKLRQELEFVR 205 (238)
Q Consensus 180 i~~L~eE~~~~~~q~~~L~~e~~~l~ 205 (238)
+..|..|..+...+|-+|.+|...|.
T Consensus 3 vaqlekevaqaeaenyqleqevaqle 28 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEVAQLE 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 44566666666667777777776653
No 69
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=64.32 E-value=19 Score=25.19 Aligned_cols=35 Identities=20% Similarity=0.115 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 173 SSEAWSMISKLTEEKTSAMQQNQKLRQELEFVRKE 207 (238)
Q Consensus 173 ~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~~ 207 (238)
|.++-.+-.+|-++...+.+++..|+++...||..
T Consensus 41 L~eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~el 75 (83)
T 1uii_A 41 LYEALKENEKLHKEIEQKDNEIARLKKENKELAEV 75 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666666666777666666543
No 70
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=64.08 E-value=17 Score=26.45 Aligned_cols=31 Identities=16% Similarity=0.283 Sum_probs=15.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 172 KSSEAWSMISKLTEEKTSAMQQNQKLRQELE 202 (238)
Q Consensus 172 k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~ 202 (238)
++..+..+|..|+.|+..|+++++.|.-++.
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le 43 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLE 43 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555554444433
No 71
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=63.94 E-value=8.3 Score=26.64 Aligned_cols=34 Identities=15% Similarity=0.050 Sum_probs=27.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 171 EKSSEAWSMISKLTEEKTSAMQQNQKLRQELEFV 204 (238)
Q Consensus 171 ~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l 204 (238)
+-...+..++..|.+|...+.+++..|++++..|
T Consensus 47 ~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 47 EYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456788888888889899999999998887654
No 72
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=63.70 E-value=17 Score=25.95 Aligned_cols=32 Identities=13% Similarity=0.096 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 175 EAWSMISKLTEEKTSAMQQNQKLRQELEFVRK 206 (238)
Q Consensus 175 e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~ 206 (238)
++..+...|..|+..+.+|+..+..|.+.++.
T Consensus 52 ~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~ 83 (90)
T 2wt7_B 52 HLENEKTQLIQQVEQLKQEVSRLARERDAYKV 83 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444455555555555554443
No 73
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=63.10 E-value=23 Score=21.54 Aligned_cols=34 Identities=24% Similarity=0.260 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026478 175 EAWSMISKLTEEKTSAMQQNQKLRQELEFVRKEI 208 (238)
Q Consensus 175 e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~~~ 208 (238)
++.+.|.++..|.....++...||..+..|...+
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee~a 39 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLKKKQQQLEEEA 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5566666666666666677777777777665543
No 74
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=62.80 E-value=14 Score=19.72 Aligned_cols=23 Identities=17% Similarity=0.260 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 026478 182 KLTEEKTSAMQQNQKLRQELEFV 204 (238)
Q Consensus 182 ~L~eE~~~~~~q~~~L~~e~~~l 204 (238)
+|++|...+..|.+.|++|...|
T Consensus 4 qlkdevgelkgevralkdevkdl 26 (27)
T 3v86_A 4 QLKDEVGELKGEVRALKDEVKDL 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhHHHHHHHHHhcc
Confidence 45566666666666666665543
No 75
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=62.51 E-value=7.2 Score=29.99 Aligned_cols=36 Identities=14% Similarity=0.032 Sum_probs=15.3
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 169 PKEKSSEAWSMISKLTEEKTSAMQQNQKLRQELEFV 204 (238)
Q Consensus 169 ~~~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l 204 (238)
++.++.+...++..|+.|+.++..+++.+++++..|
T Consensus 80 L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l 115 (138)
T 3hnw_A 80 LSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKEL 115 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444443333
No 76
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=62.42 E-value=11 Score=26.11 Aligned_cols=33 Identities=12% Similarity=0.074 Sum_probs=26.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 171 EKSSEAWSMISKLTEEKTSAMQQNQKLRQELEF 203 (238)
Q Consensus 171 ~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~ 203 (238)
+-...+.....+|.+|...+.+|++.|++++..
T Consensus 47 ~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~~ 79 (80)
T 1nlw_A 47 LHIKKLEDSDRKAVHQIDQLQREQRHLKRQLEK 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345677888888888888899999999888763
No 77
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=61.63 E-value=24 Score=23.09 Aligned_cols=33 Identities=18% Similarity=0.247 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 175 EAWSMISKLTEEKTSAMQQNQKLRQELEFVRKE 207 (238)
Q Consensus 175 e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~~ 207 (238)
.-.+.+..|+++...+..+|..|+.++..|+..
T Consensus 20 rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e 52 (63)
T 2wt7_A 20 RRRELTDTLQAETDQLEDEKSALQTEIANLLKE 52 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667888888888888888888888877654
No 78
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=60.42 E-value=20 Score=19.96 Aligned_cols=26 Identities=19% Similarity=0.134 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 174 SEAWSMISKLTEEKTSAMQQNQKLRQ 199 (238)
Q Consensus 174 ~e~~~~i~~L~eE~~~~~~q~~~L~~ 199 (238)
+.+.++|..|+.|...+.=|...|+|
T Consensus 5 aalkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 5 AALKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45566677777777766666666654
No 79
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=59.18 E-value=16 Score=26.51 Aligned_cols=32 Identities=9% Similarity=0.144 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026478 177 WSMISKLTEEKTSAMQQNQKLRQELEFVRKEI 208 (238)
Q Consensus 177 ~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~~~ 208 (238)
..++.+|++++.+|..+|..|+++.+.|....
T Consensus 11 ~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~L 42 (100)
T 1go4_E 11 REEADTLRLKVEELEGERSRLEEEKRMLEAQL 42 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45889999999999999999999988776554
No 80
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=58.95 E-value=29 Score=22.50 Aligned_cols=35 Identities=20% Similarity=0.360 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026478 175 EAWSMISKLTEEKTSAMQQNQKLRQELEFVRKEIS 209 (238)
Q Consensus 175 e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~~~~ 209 (238)
.-.+.+..|.++...+..+|..|+.++..|+....
T Consensus 19 rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~ 53 (62)
T 1jnm_A 19 RKLERIARLEEKVKTLKAQNSELASTANMLREQVA 53 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566888888888899999999999888877643
No 81
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=58.32 E-value=9.6 Score=27.21 Aligned_cols=30 Identities=30% Similarity=0.364 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 177 WSMISKLTEEKTSAMQQNQKLRQELEFVRK 206 (238)
Q Consensus 177 ~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~ 206 (238)
.+++..|+.|...+..|.+.|++|...+.+
T Consensus 47 ~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~ 76 (90)
T 2wt7_B 47 VQQKHHLENEKTQLIQQVEQLKQEVSRLAR 76 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666666666665543
No 82
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=57.77 E-value=13 Score=27.26 Aligned_cols=27 Identities=19% Similarity=0.374 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 180 ISKLTEEKTSAMQQNQKLRQELEFVRK 206 (238)
Q Consensus 180 i~~L~eE~~~~~~q~~~L~~e~~~l~~ 206 (238)
+..|+++++.+.+|.+.+++|+..|+.
T Consensus 9 ~~~l~~~~~~l~~~i~~lkeel~~L~~ 35 (109)
T 2wg5_A 9 MKQLEDKVEELLSKNYHLENEVARLRS 35 (109)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 346777778888888889999888865
No 83
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=57.12 E-value=15 Score=25.16 Aligned_cols=27 Identities=26% Similarity=0.245 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 178 SMISKLTEEKTSAMQQNQKLRQELEFV 204 (238)
Q Consensus 178 ~~i~~L~eE~~~~~~q~~~L~~e~~~l 204 (238)
+.|..|+.+++..-.+++.|+.+++.+
T Consensus 40 ~~I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 40 ALIDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444455555555544
No 84
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=56.79 E-value=12 Score=30.41 Aligned_cols=29 Identities=10% Similarity=0.151 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 177 WSMISKLTEEKTSAMQQNQKLRQELEFVR 205 (238)
Q Consensus 177 ~~~i~~L~eE~~~~~~q~~~L~~e~~~l~ 205 (238)
..+...|++++....+|++.|++++..++
T Consensus 26 ~~En~~L~~ql~~k~~ei~~L~~ql~sl~ 54 (190)
T 4emc_A 26 VNENFVLSEKLDTKATEIKQLQKQIDSLN 54 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444444444443
No 85
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=56.08 E-value=11 Score=24.42 Aligned_cols=34 Identities=12% Similarity=0.056 Sum_probs=24.0
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 168 VPKEKSSEAWSMISKLTEEKTSAMQQNQKLRQEL 201 (238)
Q Consensus 168 ~~~~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~ 201 (238)
+..+=+++....+..|.+|...|.+++..|++++
T Consensus 24 EVD~FLd~v~~~~~~l~~e~~~L~~~~~~l~~~l 57 (57)
T 2wuj_A 24 EVNEFLAQVRKDYEIVLRKKTELEAKVNELDERI 57 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4456677888888899999999999998887653
No 86
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=55.72 E-value=20 Score=28.89 Aligned_cols=32 Identities=13% Similarity=0.154 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 173 SSEAWSMISKLTEEKTSAMQQNQKLRQELEFV 204 (238)
Q Consensus 173 ~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l 204 (238)
++-+...+..|+++...+.++|++|+.|....
T Consensus 147 id~~ld~~~~L~~~n~~LqkeNeRL~~E~n~~ 178 (184)
T 3w03_C 147 ICYCLDTIAENQAKNEHLQKENERLLRDWNDV 178 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777777777777777775543
No 87
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=55.65 E-value=20 Score=24.75 Aligned_cols=43 Identities=12% Similarity=0.105 Sum_probs=32.2
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026478 166 LEVPKEKSSEAWSMISKLTEEKTSAMQQNQKLRQELEFVRKEI 208 (238)
Q Consensus 166 ~~~~~~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~~~ 208 (238)
..+|+.+++=....|..|++......++...|+.++..|..+.
T Consensus 16 i~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl 58 (78)
T 3efg_A 16 LVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDL 58 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467777777777888888877777777788888888776654
No 88
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=55.17 E-value=26 Score=22.95 Aligned_cols=37 Identities=22% Similarity=0.227 Sum_probs=24.9
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 170 KEKSSEAWSMISKLTEEKTSAMQQNQKLRQELEFVRK 206 (238)
Q Consensus 170 ~~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~ 206 (238)
+++..++...=..|.+|++.+.++...|+.|-..||+
T Consensus 26 eAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr~ 62 (63)
T 2w6a_A 26 EAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLRQ 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence 3556666666666777777777777777777766653
No 89
>2xzz_A Protein-glutamine gamma-glutamyltransferase K; 2.30A {Homo sapiens}
Probab=54.45 E-value=57 Score=23.39 Aligned_cols=55 Identities=11% Similarity=0.182 Sum_probs=39.3
Q ss_pred CCCceeEEEEEEcCCC---CeEEEEEeecCCCcEEEeCCceeeCCCCEEEEEEEecccc
Q 026478 20 LKKQSSCSMQLTNKTD---KFVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTVTMQAQK 75 (238)
Q Consensus 20 ~~~~~~~~l~L~N~s~---~~vaFKVKTT~p~~Y~VrP~~G~I~P~~s~~V~V~lq~~~ 75 (238)
.++...+.++++|+-. +...|-|--..-.+=... ..|-|.||+++.+.+.+.|..
T Consensus 18 v~~~l~v~vsf~NPL~~~L~~c~~~vEG~GL~~~~~~-~~~~v~pg~~~~~~~~~~P~~ 75 (102)
T 2xzz_A 18 VGQECEVQIVFKNPLPVTLTNVVFRLEGSGLQRPKIL-NVGDIGGNETVTLRQSFVPVR 75 (102)
T ss_dssp SSSCEEEEEEEECCSSSCBCSEEEEEEETTTEEEEEE-EECCBCTTCEEEEEEEECCCS
T ss_pred cCCeEEEEEEEECCCCCcccCEEEEEECCCCCcceEE-EcCcCCCCCEEEEEEEEecCc
Confidence 3678899999999976 456788764333212111 247799999999999998864
No 90
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=53.04 E-value=26 Score=22.32 Aligned_cols=30 Identities=17% Similarity=0.277 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 173 SSEAWSMISKLTEEKTSAMQQNQKLRQELE 202 (238)
Q Consensus 173 ~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~ 202 (238)
+..+..+...|+.+...+.++++.|+.++.
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555556666666666666766666553
No 91
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=52.51 E-value=38 Score=23.63 Aligned_cols=31 Identities=19% Similarity=0.052 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 175 EAWSMISKLTEEKTSAMQQNQKLRQELEFVR 205 (238)
Q Consensus 175 e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~ 205 (238)
++..+|..|+.|...|+.+++.+.-++..+.
T Consensus 24 ~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~ 54 (83)
T 2xdj_A 24 QLQQQLSDNQSDIDSLRGQIQENQYQLNQVV 54 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4555566666666666666666666655444
No 92
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=52.46 E-value=25 Score=24.07 Aligned_cols=31 Identities=23% Similarity=0.265 Sum_probs=15.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026478 171 EKSSEAWSMISKLTEEKTSAMQQNQKLRQELEFVRKEI 208 (238)
Q Consensus 171 ~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~~~ 208 (238)
++..-+...|..|.+. |.+|+.|-..||..+
T Consensus 15 EEVevLKe~I~EL~e~-------~~qLE~EN~~Lk~~a 45 (78)
T 1dip_A 15 EEVEILKEQIRELVEK-------NSQLERENTLLKTLA 45 (78)
T ss_dssp TSCHHHHHHHHHHHHH-------HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhC
Confidence 3444555555555554 444444444555443
No 93
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=52.03 E-value=27 Score=25.58 Aligned_cols=34 Identities=21% Similarity=0.138 Sum_probs=23.2
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 169 PKEKSSEAWSMISKLTEEKTSAMQQNQKLRQELE 202 (238)
Q Consensus 169 ~~~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~ 202 (238)
+..+++++.+++..|+++.+.+....+.|.+|.+
T Consensus 9 l~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERD 42 (106)
T 4e61_A 9 IQAELTKSQETIGSLNEEIEQYKGTVSTLEIERE 42 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777777777777777777766654
No 94
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=51.83 E-value=28 Score=20.58 Aligned_cols=21 Identities=24% Similarity=0.218 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 026478 174 SEAWSMISKLTEEKTSAMQQN 194 (238)
Q Consensus 174 ~e~~~~i~~L~eE~~~~~~q~ 194 (238)
-+...+|++|+++..++.+|.
T Consensus 11 eEtkeQi~~l~~kl~~LkeEK 31 (38)
T 2l5g_A 11 EETKEQILKLEEKLLALQEEK 31 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 355556666665555444443
No 95
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=51.52 E-value=46 Score=21.73 Aligned_cols=32 Identities=22% Similarity=0.233 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 176 AWSMISKLTEEKTSAMQQNQKLRQELEFVRKE 207 (238)
Q Consensus 176 ~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~~ 207 (238)
-.+.+..|..+...+.++|..|+.++..|+..
T Consensus 21 Kk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E 52 (63)
T 1ci6_A 21 KRAEQEALTGECKELEKKNEALKERADSLAKE 52 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667777777777777777777766654
No 96
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=51.10 E-value=36 Score=25.35 Aligned_cols=35 Identities=23% Similarity=0.251 Sum_probs=28.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 172 KSSEAWSMISKLTEEKTSAMQQNQKLRQELEFVRK 206 (238)
Q Consensus 172 k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~ 206 (238)
++.++..+|..|+++++.+..+.++|+.+...+..
T Consensus 72 ~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~ 106 (121)
T 3mq7_A 72 KVEELEGEITTLNHKLQDASAEVERLRRENQVLSV 106 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhh
Confidence 47788899999999888888888888887765543
No 97
>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A
Probab=50.89 E-value=50 Score=24.68 Aligned_cols=69 Identities=10% Similarity=0.072 Sum_probs=48.8
Q ss_pred CCCceeEEEEEEcCCCCe-EEEEEeecCCCcEEEeCCceeeCCCCEEEEEEEecccccCCCCCCCCCeEEEEEEeCCCC
Q 026478 20 LKKQSSCSMQLTNKTDKF-VAFKVKTTNPKKYCVRPNTGIILPRTSCAVTVTMQAQKEAPPDFQCKDKFLLLSVVAPDG 97 (238)
Q Consensus 20 ~~~~~~~~l~L~N~s~~~-vaFKVKTT~p~~Y~VrP~~G~I~P~~s~~V~V~lq~~~~~p~~~~~kdKFlVqs~~v~~~ 97 (238)
.++.+.-.++++|..... =+|+|+-...+...-.-..+ |.||++..|.+...+. ...-+-|..+.-+++
T Consensus 31 ~G~~~ti~vtV~N~G~~~a~~~~V~lyvng~~v~t~~v~-La~G~s~tv~f~~~~~--------~~G~~~v~AvVD~~n 100 (127)
T 3idu_A 31 VNKLAEYEVHVKNLGGIGVPSTKVRVYINGTLYKNWTVS-LGPKEEKVLTFNWTPT--------QEGMYRINATVDEEN 100 (127)
T ss_dssp TTCCEEEEEEEEECSSSCEEEEEEEEEETTEEEEEEEEE-ECTTCEEEEEEEECCS--------SCEEEEEEEEESTTC
T ss_pred CCCEEEEEEEEEECCCCccCCcEEEEEECCEEEeeEEec-cCCCCeEEEEEEEEcC--------CCcEEEEEEEEcCCC
Confidence 367889999999998644 68898876676655444444 9999999999987642 134556666665544
No 98
>2huh_A Putative DNA mismatch repair protein; structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.54A {Bacteroides thetaiotaomicron} SCOP: b.7.5.1
Probab=50.54 E-value=51 Score=25.55 Aligned_cols=65 Identities=14% Similarity=0.243 Sum_probs=50.3
Q ss_pred eEEEEEEcCCCCeEEEEEeecCCCcEEEeCCceeeCCCCEEEEEEE-ecccccCCCCCCCCCeEEEEEEeCCCC
Q 026478 25 SCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTVT-MQAQKEAPPDFQCKDKFLLLSVVAPDG 97 (238)
Q Consensus 25 ~~~l~L~N~s~~~vaFKVKTT~p~~Y~VrP~~G~I~P~~s~~V~V~-lq~~~~~p~~~~~kdKFlVqs~~v~~~ 97 (238)
.-..-|.|.|+-.+.|-.-+...+.|.++ ..|.|+|+..+.|.=. +... ..-.+|.||-+.-..+
T Consensus 29 ~fe~YlVNdSNy~l~f~y~~~~~~~w~l~-~~G~iePntk~~ieef~~~el-------n~~~~~~vQ~layK~~ 94 (147)
T 2huh_A 29 PFEAYLVNDSNYYLYYTYLSAEGKAWNNR-SHGLVEPNTKLLLEEFTKDVL-------NEMERVAVQLIAFKDG 94 (147)
T ss_dssp CEEEEEEECSSSEEEEEEEEEETTEEEEE-EEEEECTTEEEEEEEECGGGG-------GGCSSEEEEEEEECSS
T ss_pred ceEEEEEeCCCcEEEEEEEEeeCCeEEEE-EeeEECCCcEEEEEeeChhHh-------cCCceEEEEEEEEcCC
Confidence 45788999999999999988777788777 6899999998887633 3222 2456788998887764
No 99
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=50.16 E-value=33 Score=22.91 Aligned_cols=39 Identities=18% Similarity=0.173 Sum_probs=27.7
Q ss_pred cchHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHhc
Q 026478 171 EKSSEAWSMISKLTEEKT------------SAMQQNQKLRQELEFVRKEIS 209 (238)
Q Consensus 171 ~k~~e~~~~i~~L~eE~~------------~~~~q~~~L~~e~~~l~~~~~ 209 (238)
.++.++..++.+|+.|+. .+.++..+|..|++.+.+...
T Consensus 6 ~~~~~l~~E~~~lk~E~~stSaQDeFAKWaKL~Rk~DKl~~ele~l~~~l~ 56 (65)
T 3sja_C 6 KKYLAKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNLKDEIQ 56 (65)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 355677778888887776 477777777788777766543
No 100
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=49.25 E-value=13 Score=22.96 Aligned_cols=17 Identities=18% Similarity=0.520 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHhcC
Q 026478 221 VLLIGLLGILVGYLVKT 237 (238)
Q Consensus 221 v~~v~ll~~llG~~~~~ 237 (238)
++++++++++++||+++
T Consensus 21 v~~~~ii~~~~~~~~RR 37 (44)
T 2ks1_B 21 LLLLLVVALGIGLFMRR 37 (44)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 45566677777777765
No 101
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=49.20 E-value=48 Score=20.96 Aligned_cols=38 Identities=21% Similarity=0.284 Sum_probs=26.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026478 171 EKSSEAWSMISKLTEEKTSAMQQNQKLRQELEFVRKEI 208 (238)
Q Consensus 171 ~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~~~ 208 (238)
.++.++..++..|......|..-.+..++|+..|+.+.
T Consensus 9 ~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeel 46 (51)
T 3m91_A 9 RDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEV 46 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777766666666666677777776543
No 102
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=48.91 E-value=42 Score=20.30 Aligned_cols=36 Identities=17% Similarity=0.181 Sum_probs=24.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 172 KSSEAWSMISKLTEEKTSAMQQNQKLRQELEFVRKE 207 (238)
Q Consensus 172 k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~~ 207 (238)
-+.++.+....|+.-...|.+....|+.|-.+||+.
T Consensus 4 Yl~eLE~r~k~le~~naeLEervstLq~EN~mLRqv 39 (42)
T 2oqq_A 4 YLSELENRVKDLENKNSELEERLSTLQNENQMLRHI 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 355666666666666666666666777777777764
No 103
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=48.71 E-value=27 Score=20.26 Aligned_cols=21 Identities=19% Similarity=0.243 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 026478 181 SKLTEEKTSAMQQNQKLRQEL 201 (238)
Q Consensus 181 ~~L~eE~~~~~~q~~~L~~e~ 201 (238)
...+.++..+.+||..|+++.
T Consensus 10 ~a~qqDIddlkrQN~~Le~Qi 30 (34)
T 1a93_B 10 DTHQQDIDDLKRQNALLEQQV 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHhhHHHHHHHHHHHHHHH
Confidence 345555666667777776654
No 104
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=48.58 E-value=25 Score=25.27 Aligned_cols=39 Identities=13% Similarity=0.047 Sum_probs=28.7
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 167 EVPKEKSSEAWSMISKLTEEKTSAMQQNQKLRQELEFVR 205 (238)
Q Consensus 167 ~~~~~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~ 205 (238)
+.++.++..+.....++.+|..++.+.+..+..+++.+.
T Consensus 26 e~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~e 64 (101)
T 3u1c_A 26 EQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVL 64 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777777788888888888888887777543
No 105
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=48.11 E-value=27 Score=23.86 Aligned_cols=24 Identities=33% Similarity=0.326 Sum_probs=19.9
Q ss_pred cccccccchHHHHHHHHHHHHHHH
Q 026478 165 SLEVPKEKSSEAWSMISKLTEEKT 188 (238)
Q Consensus 165 ~~~~~~~k~~e~~~~i~~L~eE~~ 188 (238)
.++.|+++.+++...+.+|+.|.+
T Consensus 16 EVevLKe~I~EL~e~~~qLE~EN~ 39 (78)
T 1dip_A 16 EVEILKEQIRELVEKNSQLERENT 39 (78)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356789999999999999988743
No 106
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=47.34 E-value=23 Score=29.59 Aligned_cols=42 Identities=21% Similarity=0.281 Sum_probs=31.6
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 166 LEVPKEKSSEAWSMISKLTEEKTSAMQQNQKLRQELEFVRKE 207 (238)
Q Consensus 166 ~~~~~~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~~ 207 (238)
+..+++++..+.+.+.+.++|++++..+..+-++.+..+|.+
T Consensus 173 ~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~ 214 (228)
T 3q0x_A 173 LSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQ 214 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777778888888888888877777777777777754
No 107
>2ls4_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=52.95 E-value=4 Score=22.38 Aligned_cols=17 Identities=18% Similarity=0.354 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHhc
Q 026478 220 FVLLIGLLGILVGYLVK 236 (238)
Q Consensus 220 ~v~~v~ll~~llG~~~~ 236 (238)
.+++.+++|..+|||+-
T Consensus 4 ~l~iavvlGa~~Gyf~F 20 (26)
T 2ls4_A 4 YLCIAVAAGAGTGYFLF 20 (26)
Confidence 35677788888999873
No 108
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=47.18 E-value=21 Score=32.13 Aligned_cols=33 Identities=21% Similarity=0.135 Sum_probs=17.7
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 168 VPKEKSSEAWSMISKLTEEKTSAMQQNQKLRQE 200 (238)
Q Consensus 168 ~~~~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e 200 (238)
++++++.++.+++..|+++...+..+++.++++
T Consensus 7 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 39 (403)
T 4etp_A 7 ALKEKIAALKEKIAALKEKIKDTELGMKELNEI 39 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555443
No 109
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=46.79 E-value=25 Score=26.27 Aligned_cols=19 Identities=32% Similarity=0.459 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 026478 189 SAMQQNQKLRQELEFVRKE 207 (238)
Q Consensus 189 ~~~~q~~~L~~e~~~l~~~ 207 (238)
.++.+|..|+.+++.+++.
T Consensus 65 ~a~~e~e~Lr~e~~~l~~~ 83 (120)
T 3i00_A 65 QAADDCEFLRAELDELRRQ 83 (120)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444466666666666543
No 110
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=45.42 E-value=45 Score=24.25 Aligned_cols=35 Identities=9% Similarity=0.048 Sum_probs=25.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 171 EKSSEAWSMISKLTEEKTSAMQQNQKLRQELEFVR 205 (238)
Q Consensus 171 ~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~ 205 (238)
.++..+.+++..|.++.+.+-+..+.+++.+..+.
T Consensus 6 ~~~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lt 40 (106)
T 2aze_B 6 GRLEGLTQDLRQLQESEQQLDHLMNICTTQLRLLS 40 (106)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46677788888887777777777777777666554
No 111
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=44.84 E-value=48 Score=23.91 Aligned_cols=23 Identities=26% Similarity=0.200 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 026478 181 SKLTEEKTSAMQQNQKLRQELEF 203 (238)
Q Consensus 181 ~~L~eE~~~~~~q~~~L~~e~~~ 203 (238)
..|..|...|+.||+.|.+|..+
T Consensus 68 ~eLe~everL~~ENq~L~~e~~~ 90 (104)
T 3s9g_A 68 RELELELDRLRAENLQLLTENEL 90 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334444444444444444443
No 112
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=44.76 E-value=51 Score=23.03 Aligned_cols=32 Identities=25% Similarity=0.196 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 175 EAWSMISKLTEEKTSAMQQNQKLRQELEFVRK 206 (238)
Q Consensus 175 e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~ 206 (238)
++..+-.+|.++......+...|++|...|+.
T Consensus 35 eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~e 66 (83)
T 1wlq_A 35 EALKENEKLHKEIEQKDSEIARLRKENKDLAE 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444544444444455555555554443
No 113
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=44.68 E-value=30 Score=25.02 Aligned_cols=35 Identities=20% Similarity=0.243 Sum_probs=16.5
Q ss_pred chHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Q 026478 172 KSSEAWSMISKLTEEKTSAMQ-------QNQKLRQELEFVRK 206 (238)
Q Consensus 172 k~~e~~~~i~~L~eE~~~~~~-------q~~~L~~e~~~l~~ 206 (238)
++-++...+.+|.+|...++. +.+.|..|+.+||.
T Consensus 38 EYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ 79 (104)
T 3s9g_A 38 EYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRA 79 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHH
Confidence 334444444455444443333 34445555555554
No 114
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=44.55 E-value=34 Score=30.74 Aligned_cols=22 Identities=18% Similarity=-0.021 Sum_probs=10.3
Q ss_pred cccchHHHHHHHHHHHHHHHHH
Q 026478 169 PKEKSSEAWSMISKLTEEKTSA 190 (238)
Q Consensus 169 ~~~k~~e~~~~i~~L~eE~~~~ 190 (238)
++++..++...|..+++++..+
T Consensus 15 l~~~~~~l~~~~~~~~~~~~~~ 36 (403)
T 4etp_A 15 LKEKIAALKEKIKDTELGMKEL 36 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555554444433
No 115
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=44.00 E-value=30 Score=26.72 Aligned_cols=31 Identities=10% Similarity=0.149 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 174 SEAWSMISKLTEEKTSAMQQNQKLRQELEFV 204 (238)
Q Consensus 174 ~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l 204 (238)
.++...+.+|.+|...+.+++++|+.++...
T Consensus 28 ~~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~ 58 (171)
T 2zvf_A 28 AKLPKTVERFFEEWKDQRKEIERLKSVIADL 58 (171)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667778888888888888888888776654
No 116
>1a93_A Coiled coil, LZ, MYC proto-oncogene protein; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Homo sapiens} SCOP: h.1.3.1 PDB: 2a93_A
Probab=43.56 E-value=47 Score=19.24 Aligned_cols=26 Identities=23% Similarity=0.316 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 179 MISKLTEEKTSAMQQNQKLRQELEFV 204 (238)
Q Consensus 179 ~i~~L~eE~~~~~~q~~~L~~e~~~l 204 (238)
.-.+|--|+..+++.+++|.+.++.|
T Consensus 8 dE~kLl~ekE~l~~r~eqL~~kLe~L 33 (34)
T 1a93_A 8 EEQKLISEEDLLRKRREQLKHKLEQL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33455555556666666666665543
No 117
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=43.55 E-value=48 Score=26.77 Aligned_cols=36 Identities=14% Similarity=0.173 Sum_probs=13.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 171 EKSSEAWSMISKLTEEKTSAMQQNQKLRQELEFVRK 206 (238)
Q Consensus 171 ~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~ 206 (238)
+++..+.-.|++|.-|...+.+|++...+|...|++
T Consensus 13 ~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ 48 (190)
T 4emc_A 13 QQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQK 48 (190)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444443
No 118
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=42.95 E-value=18 Score=22.25 Aligned_cols=17 Identities=12% Similarity=0.475 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHhcC
Q 026478 221 VLLIGLLGILVGYLVKT 237 (238)
Q Consensus 221 v~~v~ll~~llG~~~~~ 237 (238)
++++++++++++||+++
T Consensus 20 v~~v~ii~~~~~~~~RR 36 (44)
T 2l2t_A 20 LFILVIVGLTFAVYVRR 36 (44)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 34555666777777764
No 119
>1gyu_A Adapter-related protein complex 1 gamma 1 subunit; clathrin, golgi, adaptin, endocytosis, adaptor; 1.81A {Mus musculus} SCOP: b.1.10.2
Probab=42.83 E-value=45 Score=25.36 Aligned_cols=67 Identities=12% Similarity=0.208 Sum_probs=39.2
Q ss_pred eeEEEEEEcCCCC-eEEEEEeecCCCcEEEe--CCce-eeCCCCE--EEEEEEecccccCCCCCCCCCeEEEEEEeC
Q 026478 24 SSCSMQLTNKTDK-FVAFKVKTTNPKKYCVR--PNTG-IILPRTS--CAVTVTMQAQKEAPPDFQCKDKFLLLSVVA 94 (238)
Q Consensus 24 ~~~~l~L~N~s~~-~vaFKVKTT~p~~Y~Vr--P~~G-~I~P~~s--~~V~V~lq~~~~~p~~~~~kdKFlVqs~~v 94 (238)
..-.++.+|.+.. ---|.+..-.|+-|.++ |.+| .|.|+.. ++-.+.+..... .+.+=|+.|.+..-
T Consensus 49 ~~i~~~f~N~s~~~it~f~fQaAVPKs~kLqL~ppSg~~L~p~~~~~ItQ~m~I~n~~~----~~l~LR~klsY~~~ 121 (140)
T 1gyu_A 49 TVITIQASNSTELDMTDFVFQAAVPKTFQLQLLSPSSSVVPAFNTGTITQVIKVLNPQK----QQLRMRIKLTYNHK 121 (140)
T ss_dssp EEEEEEEEECSSSCBEEEEEEEECCTTCEEEECCCSCSCBCGGGCCCEEEEEEEECTTC----CCCCEEEEEEEEET
T ss_pred EEEEEEEEECCCCccccEEEEEEcCcccEEEeeCCCCCccCCCCCCCEEEEEEEeCCCC----CCEEEEEEEEEEEC
Confidence 5556788898764 45677777778877666 6666 5888432 333333322111 13456666766654
No 120
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=42.42 E-value=41 Score=23.01 Aligned_cols=38 Identities=13% Similarity=0.092 Sum_probs=27.5
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 168 VPKEKSSEAWSMISKLTEEKTSAMQQNQKLRQELEFVR 205 (238)
Q Consensus 168 ~~~~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~ 205 (238)
.+..++.++.....++.+|..++.+.+..|.++++...
T Consensus 24 ~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~e 61 (81)
T 1ic2_A 24 QAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYS 61 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566667777777777888888888888887777543
No 121
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=41.86 E-value=64 Score=20.46 Aligned_cols=34 Identities=9% Similarity=0.147 Sum_probs=18.2
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 169 PKEKSSEAWSMISKLTEEKTSAMQQNQKLRQELE 202 (238)
Q Consensus 169 ~~~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~ 202 (238)
|.+++..+...|..|+.+.+.++-+.+..++|-.
T Consensus 9 Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~ 42 (52)
T 1jcd_A 9 ASSDAQTANAKADQASNDANAARSDAQAAKDDAA 42 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555555555543
No 122
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=41.74 E-value=60 Score=22.55 Aligned_cols=21 Identities=14% Similarity=0.253 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 026478 186 EKTSAMQQNQKLRQELEFVRK 206 (238)
Q Consensus 186 E~~~~~~q~~~L~~e~~~l~~ 206 (238)
+++....+|+.|..|+..|+.
T Consensus 46 kL~eae~rn~eL~~e~~~l~~ 66 (81)
T 1wt6_A 46 QLREAEARNRDLEAHVRQLQE 66 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444455444444443
No 123
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=41.65 E-value=51 Score=24.30 Aligned_cols=33 Identities=18% Similarity=0.290 Sum_probs=22.3
Q ss_pred ccccchH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 168 VPKEKSS----EAWSMISKLTEEKTSAMQQNQKLRQE 200 (238)
Q Consensus 168 ~~~~k~~----e~~~~i~~L~eE~~~~~~q~~~L~~e 200 (238)
+++.|+. ++..+++.|++|...++..++.++..
T Consensus 21 ~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~ 57 (111)
T 2v66_B 21 ALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKY 57 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455554 44556888888888888888777543
No 124
>3e38_A Two-domain protein containing predicted PHP-like dependent phosphoesterase; structural genomics; 2.20A {Bacteroides vulgatus atcc 8482}
Probab=41.54 E-value=39 Score=29.66 Aligned_cols=65 Identities=18% Similarity=0.223 Sum_probs=48.9
Q ss_pred EEEEEEcCCCCeEEEEEeecCCCcEEEeCCceeeCCCCEEEEEEEecccccCCCCCCCCCeEEEEEEeCCCC
Q 026478 26 CSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTVTMQAQKEAPPDFQCKDKFLLLSVVAPDG 97 (238)
Q Consensus 26 ~~l~L~N~s~~~vaFKVKTT~p~~Y~VrP~~G~I~P~~s~~V~V~lq~~~~~p~~~~~kdKFlVqs~~v~~~ 97 (238)
-++.|+|.++- -|.++-+++..|.+.++.=-|+|+++..+.|-.....+ ...=+|-|--..+.++
T Consensus 270 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 334 (343)
T 3e38_A 270 VTLSITNVTDL--VLKLKKTAHDTLLVYFRDMTLKPHTRYTVRIGFKQGIK-----GGDVNFEVTNFIVAPD 334 (343)
T ss_dssp EEEEEEECSSS--CEEEEECSCCTTEECCSEEEECTTEEEEEEEEECTTCC-----CCEEEEEEEEEEEETT
T ss_pred eEEEeecCCCc--ceeeeccccccccccCceEEecCCCeEEEEEecccccc-----ceEEEEEeeeeeecCC
Confidence 58889998875 56777789999999999999999999999997653221 2345666655555443
No 125
>1iu1_A Gamma1-adaptin; coated PITS, endocytosis; 1.80A {Homo sapiens} SCOP: b.1.10.2
Probab=41.12 E-value=61 Score=24.77 Aligned_cols=67 Identities=13% Similarity=0.212 Sum_probs=39.0
Q ss_pred eeEEEEEEcCCCC-eEEEEEeecCCCcEEEe--CCce-eeCCCC--EEEEEEEecccccCCCCCCCCCeEEEEEEeC
Q 026478 24 SSCSMQLTNKTDK-FVAFKVKTTNPKKYCVR--PNTG-IILPRT--SCAVTVTMQAQKEAPPDFQCKDKFLLLSVVA 94 (238)
Q Consensus 24 ~~~~l~L~N~s~~-~vaFKVKTT~p~~Y~Vr--P~~G-~I~P~~--s~~V~V~lq~~~~~p~~~~~kdKFlVqs~~v 94 (238)
..-.++.+|.+.. ---|.+..-.|+-|.++ |.+| .|.|+. .++-.+.+..... .+.+=|+.|.+..-
T Consensus 55 ~~i~~~f~N~s~~~it~f~fQaAVPK~~kLqL~ppSg~~L~p~~~~~ItQ~~~I~n~~~----~~lklR~klsY~~~ 127 (146)
T 1iu1_A 55 TVITIQASNSTELDMTDFVFQAAVPKTFQLQLLSPSSSIVPAFNTGTITQVIKVLNPQK----QQLRMRIKLTYNHK 127 (146)
T ss_dssp EEEEEEEEECSSSCBEEEEEEEECCTTSEEEECCCSCSCBCGGGCCCEEEEEEEECTTC----CCCCCEEEEEEEET
T ss_pred EEEEEEEEeCCCCccccEEEEEEcCcccEEEeeCCCCCccCCCCCCCEEEEEEEeCCCC----CCEEEEEEEEEEEC
Confidence 5556788898764 45677777778876665 6666 588844 2333333322111 13556677766654
No 126
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=40.73 E-value=67 Score=20.25 Aligned_cols=24 Identities=13% Similarity=0.136 Sum_probs=14.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Q 026478 172 KSSEAWSMISKLTEEKTSAMQQNQ 195 (238)
Q Consensus 172 k~~e~~~~i~~L~eE~~~~~~q~~ 195 (238)
.++++..++..|+.|...+++|.+
T Consensus 4 sYdQL~~QVe~Lk~ENshLrrEL~ 27 (54)
T 1deb_A 4 SYDQLLKQVEALKMENSNLRQELE 27 (54)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHH
Confidence 345666667667666655555544
No 127
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=40.67 E-value=78 Score=21.70 Aligned_cols=29 Identities=14% Similarity=0.271 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026478 180 ISKLTEEKTSAMQQNQKLRQELEFVRKEI 208 (238)
Q Consensus 180 i~~L~eE~~~~~~q~~~L~~e~~~l~~~~ 208 (238)
...+......|.++|..|+.++..|++..
T Consensus 38 ~~e~~~r~~~L~~eN~~L~~~v~~L~~E~ 66 (78)
T 1gu4_A 38 NLETQHKVLELTAENERLQKKVEQLSREL 66 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666678899999999998887654
No 128
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=40.46 E-value=36 Score=24.56 Aligned_cols=13 Identities=31% Similarity=0.496 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHH
Q 026478 192 QQNQKLRQELEFV 204 (238)
Q Consensus 192 ~q~~~L~~e~~~l 204 (238)
.++.++.+|++.|
T Consensus 47 ~~~~~ie~ElEeL 59 (97)
T 2eqb_B 47 EEADKLNKEVEDL 59 (97)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444555543
No 129
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=40.34 E-value=45 Score=19.47 Aligned_cols=18 Identities=22% Similarity=0.326 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 026478 180 ISKLTEEKTSAMQQNQKL 197 (238)
Q Consensus 180 i~~L~eE~~~~~~q~~~L 197 (238)
|..=.+|+.+++++|..|
T Consensus 16 ie~KdeeIa~Lk~eN~eL 33 (37)
T 1t6f_A 16 IEQKDNEIARLKKENKEL 33 (37)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHH
Confidence 333344444444445544
No 130
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=40.31 E-value=47 Score=27.31 Aligned_cols=37 Identities=16% Similarity=0.222 Sum_probs=24.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026478 172 KSSEAWSMISKLTEEKTSAMQQNQKLRQELEFVRKEI 208 (238)
Q Consensus 172 k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~~~ 208 (238)
.+..+.+++..|+++...+..+..+++.|.+.+|+..
T Consensus 60 e~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~ 96 (213)
T 4ani_A 60 ELAAAKAQIAELEAKLSEMEHRYLRLYADFENFRRRT 96 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666677777776666666667777777666543
No 131
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=40.19 E-value=41 Score=23.24 Aligned_cols=31 Identities=16% Similarity=0.207 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 174 SEAWSMISKLTEEKTSAMQQNQKLRQELEFV 204 (238)
Q Consensus 174 ~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l 204 (238)
.++..-|.+|+.|...+......|++....|
T Consensus 42 ~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL 72 (78)
T 3iv1_A 42 QKLEEMVTRLDQEVAEVDKNIELLKKKDEEL 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555544444444444444444443
No 132
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=39.76 E-value=78 Score=22.18 Aligned_cols=29 Identities=14% Similarity=0.271 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026478 180 ISKLTEEKTSAMQQNQKLRQELEFVRKEI 208 (238)
Q Consensus 180 i~~L~eE~~~~~~q~~~L~~e~~~l~~~~ 208 (238)
...+..+...|.++|..|+.++..|++..
T Consensus 38 ~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~ 66 (87)
T 1hjb_A 38 NLETQHKVLELTAENERLQKKVEQLSREL 66 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555678888888888888877654
No 133
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=39.09 E-value=49 Score=24.37 Aligned_cols=31 Identities=26% Similarity=0.098 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 175 EAWSMISKLTEEKTSAMQQNQKLRQELEFVR 205 (238)
Q Consensus 175 e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~ 205 (238)
++...+.+..++...++++...|+.|+.+.|
T Consensus 86 ~l~~~~~~e~~~~~~L~~~i~~Le~el~~~R 116 (117)
T 3kin_B 86 EWKKKYEKEKEKNKALKSVIQHLEVELNRWR 116 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455555566666667777777777777664
No 134
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=38.95 E-value=43 Score=22.42 Aligned_cols=20 Identities=30% Similarity=0.297 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 026478 184 TEEKTSAMQQNQKLRQELEF 203 (238)
Q Consensus 184 ~eE~~~~~~q~~~L~~e~~~ 203 (238)
+.|+..++++.+.|+-|++-
T Consensus 55 k~Ei~elrr~iq~L~~el~s 74 (77)
T 3trt_A 55 KQESTEYRRQVQSLTMEVDA 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444443
No 135
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=38.78 E-value=64 Score=26.33 Aligned_cols=23 Identities=17% Similarity=0.190 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 026478 176 AWSMISKLTEEKTSAMQQNQKLR 198 (238)
Q Consensus 176 ~~~~i~~L~eE~~~~~~q~~~L~ 198 (238)
+-..|..|++|+..+.++|..|+
T Consensus 120 Lh~~ie~l~eEi~~LkeEn~eLk 142 (209)
T 2wvr_A 120 LHKEIEQKDNEIARLKKENKELA 142 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444443
No 136
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=38.36 E-value=63 Score=23.07 Aligned_cols=38 Identities=18% Similarity=0.176 Sum_probs=27.6
Q ss_pred cchHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHh
Q 026478 171 EKSSEAWSMISKLTEEKT------------SAMQQNQKLRQELEFVRKEI 208 (238)
Q Consensus 171 ~k~~e~~~~i~~L~eE~~------------~~~~q~~~L~~e~~~l~~~~ 208 (238)
.+..++..++.+|+.|+. .+.|+.++|.+|++.+.+..
T Consensus 23 ~~~~~lk~E~~~lk~E~~stSaQDeFAKWaKL~Rk~DKl~~ele~l~~~l 72 (93)
T 3sjb_C 23 KKYLAKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNLKDEI 72 (93)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCTTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888888888776 47777777778877766554
No 137
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa}
Probab=38.28 E-value=38 Score=24.45 Aligned_cols=30 Identities=13% Similarity=0.196 Sum_probs=13.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 171 EKSSEAWSMISKLTEEKTSAMQQNQKLRQE 200 (238)
Q Consensus 171 ~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e 200 (238)
..++++.+...+-++....+.+-++.|++|
T Consensus 64 ArLAeAka~~~Ka~~~~~el~~~I~~LrqE 93 (98)
T 4fm3_A 64 ARLAESKVLTQKSKDQLGELDKSLKRLRKQ 93 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444443
No 138
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=38.15 E-value=70 Score=22.58 Aligned_cols=31 Identities=19% Similarity=0.331 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 175 EAWSMISKLTEEKTSAMQQNQKLRQELEFVR 205 (238)
Q Consensus 175 e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~ 205 (238)
++..+|..+..|+..+.-|...|+.+...++
T Consensus 60 ~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k 90 (93)
T 3s4r_A 60 ELRRQVDQLTNDKARVEVERDNLAEDIMRLR 90 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444443
No 139
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=38.00 E-value=52 Score=22.76 Aligned_cols=35 Identities=11% Similarity=0.150 Sum_probs=20.3
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 169 PKEKSSEAWSMISKLTEEKTSAMQQNQKLRQELEF 203 (238)
Q Consensus 169 ~~~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~ 203 (238)
++.+.+++...|..|+.++...+.+...++.|+..
T Consensus 18 ~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~ 52 (79)
T 3cvf_A 18 LETRNAELEHQLRAMERSLEEARAERERARAEVGR 52 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666666666666666555555555443
No 140
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=37.92 E-value=74 Score=19.99 Aligned_cols=31 Identities=13% Similarity=0.259 Sum_probs=21.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 172 KSSEAWSMISKLTEEKTSAMQQNQKLRQELE 202 (238)
Q Consensus 172 k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~ 202 (238)
.+.++..+|-.|.+++..-..++..+.++++
T Consensus 13 sV~KLek~ID~LEdeL~~eKek~~~i~~eLD 43 (52)
T 2z5i_A 13 EVARLKKLVDDLEDELYAQKLKYKAISEELD 43 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4456677777777776666666666777665
No 141
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=37.83 E-value=29 Score=29.33 Aligned_cols=40 Identities=20% Similarity=0.271 Sum_probs=31.2
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026478 170 KEKSSEAWSMISKLTEEKTSAMQQNQKLRQELEFVRKEIS 209 (238)
Q Consensus 170 ~~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~~~~ 209 (238)
+.+++++..++..|......+.++.+.+++|+..|+....
T Consensus 53 ~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeEle 92 (251)
T 3m9b_A 53 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVD 92 (251)
T ss_dssp CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467788888888887777788888888888888877653
No 142
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=37.75 E-value=49 Score=23.57 Aligned_cols=38 Identities=18% Similarity=0.171 Sum_probs=26.8
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 167 EVPKEKSSEAWSMISKLTEEKTSAMQQNQKLRQELEFV 204 (238)
Q Consensus 167 ~~~~~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l 204 (238)
+.++.++..+.....++.+|..++.+.+..++++++..
T Consensus 26 e~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~ 63 (101)
T 3u59_A 26 EQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKY 63 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777777777788877777777776643
No 143
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=37.67 E-value=76 Score=22.90 Aligned_cols=13 Identities=15% Similarity=0.240 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHH
Q 026478 222 LLIGLLGILVGYL 234 (238)
Q Consensus 222 ~~v~ll~~llG~~ 234 (238)
++++++++++|..
T Consensus 95 i~~~i~~~~~~~~ 107 (109)
T 3hd7_B 95 ILGIIIASTIGGI 107 (109)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHhccc
Confidence 3334455555543
No 144
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=37.51 E-value=61 Score=22.43 Aligned_cols=27 Identities=15% Similarity=0.139 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 175 EAWSMISKLTEEKTSAMQQNQKLRQEL 201 (238)
Q Consensus 175 e~~~~i~~L~eE~~~~~~q~~~L~~e~ 201 (238)
++-.+|..+++|+..++++|+.|+.=.
T Consensus 38 ~Lh~~ie~~~eEi~~LkeEN~~L~el~ 64 (79)
T 2zxx_A 38 KLHKEIEQKDSEIARLRKENKDLAEVA 64 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555666666666666664433
No 145
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=37.35 E-value=90 Score=21.75 Aligned_cols=26 Identities=15% Similarity=0.208 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 174 SEAWSMISKLTEEKTSAMQQNQKLRQ 199 (238)
Q Consensus 174 ~e~~~~i~~L~eE~~~~~~q~~~L~~ 199 (238)
.++-..|..|++|+..+.++|+.|+.
T Consensus 49 ~~Lh~~ie~l~eEi~~lk~en~eL~e 74 (83)
T 1uii_A 49 EKLHKEIEQKDNEIARLKKENKELAE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555666666666666666666653
No 146
>3hn9_A Lamin-B1; structural genomics, structural genomics consortium, SGC, acetylation, chromosomal rearrangement, coiled coil, intermediate filament; 2.00A {Homo sapiens} PDB: 3umn_A 2kpw_A
Probab=37.25 E-value=58 Score=24.21 Aligned_cols=42 Identities=7% Similarity=0.100 Sum_probs=29.8
Q ss_pred EEEEEEcCCCCeEE---EEEeecCCC---cEEEeCCceeeCCCCEEEEE
Q 026478 26 CSMQLTNKTDKFVA---FKVKTTNPK---KYCVRPNTGIILPRTSCAVT 68 (238)
Q Consensus 26 ~~l~L~N~s~~~va---FKVKTT~p~---~Y~VrP~~G~I~P~~s~~V~ 68 (238)
..++|.|.+++.+. |+++-...+ .|.. |..=+|+||.+++|-
T Consensus 25 ~fV~L~N~s~~~~~L~gW~l~r~v~~~~~~y~F-p~~~~L~pg~~vtVw 72 (123)
T 3hn9_A 25 KFIRLKNTSEQDQPMGGWEMIRKIGDTSVSYKY-TSRYVLKAGQTVTIW 72 (123)
T ss_dssp SEEEEEECSSSCEECTTCEEEEEETTEEEEEEC-CTTCEECTTCEEEEE
T ss_pred CEEEEEECCCCceecCCcEEEEEeCCCceEEEc-CCCcEECCCCEEEEE
Confidence 47899999987775 788755443 3544 655589999987653
No 147
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=36.94 E-value=46 Score=26.77 Aligned_cols=24 Identities=17% Similarity=0.209 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 183 LTEEKTSAMQQNQKLRQELEFVRK 206 (238)
Q Consensus 183 L~eE~~~~~~q~~~L~~e~~~l~~ 206 (238)
+-+....|..+|.+|++|.++|++
T Consensus 150 ~ld~~~~L~~~n~~LqkeNeRL~~ 173 (184)
T 3w03_C 150 CLDTIAENQAKNEHLQKENERLLR 173 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555544
No 148
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=35.75 E-value=64 Score=22.59 Aligned_cols=9 Identities=33% Similarity=0.693 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 026478 226 LLGILVGYL 234 (238)
Q Consensus 226 ll~~llG~~ 234 (238)
++.+++.+|
T Consensus 81 il~ii~~~~ 89 (91)
T 3hd7_A 81 ILIIIIVYF 89 (91)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHH
Confidence 333333333
No 149
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=35.56 E-value=62 Score=21.95 Aligned_cols=33 Identities=9% Similarity=0.243 Sum_probs=17.8
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 170 KEKSSEAWSMISKLTEEKTSAMQQNQKLRQELE 202 (238)
Q Consensus 170 ~~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~ 202 (238)
+.+..++...|..|+.++...+.+..+++.|+.
T Consensus 13 E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk 45 (72)
T 3cve_A 13 EIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLK 45 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555666666655555555555554444
No 150
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=35.53 E-value=75 Score=21.48 Aligned_cols=35 Identities=17% Similarity=0.190 Sum_probs=18.8
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 168 VPKEKSSEAWSMISKLTEEKTSAMQQNQKLRQELE 202 (238)
Q Consensus 168 ~~~~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~ 202 (238)
.|++.+.+...+|.+|++...--.+..++|.+|+.
T Consensus 22 ~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEii 56 (75)
T 3a7o_A 22 ILQKELKSKEQEIRRLKEVIALKNKNTERLNDELI 56 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHH
Confidence 45556666666676666655433333344544443
No 151
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=35.13 E-value=59 Score=23.89 Aligned_cols=33 Identities=9% Similarity=0.027 Sum_probs=17.3
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 167 EVPKEKSSEAWSMISKLTEEKTSAMQQNQKLRQ 199 (238)
Q Consensus 167 ~~~~~k~~e~~~~i~~L~eE~~~~~~q~~~L~~ 199 (238)
++|+.++..|...+..-+.++..+.++..+++.
T Consensus 27 ~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~ 59 (110)
T 2v4h_A 27 EDLRQQLQQAEEALVAKQELIDKLKEEAEQHKI 59 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555555544444
No 152
>3vlc_E Golgi to ER traffic protein 1; ATPase, membrane protein insertion, ATP binding, membrane PR binding; HET: ADP; 4.50A {Saccharomyces cerevisiae}
Probab=34.57 E-value=42 Score=24.02 Aligned_cols=39 Identities=18% Similarity=0.173 Sum_probs=30.2
Q ss_pred cchHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHhc
Q 026478 171 EKSSEAWSMISKLTEEKT------------SAMQQNQKLRQELEFVRKEIS 209 (238)
Q Consensus 171 ~k~~e~~~~i~~L~eE~~------------~~~~q~~~L~~e~~~l~~~~~ 209 (238)
.+..++..++.+|+.|+. .+.++.++|.+|++.+++...
T Consensus 30 ~~~~~lk~E~~~lk~E~~stSaQDEFAKWAKL~Rk~DKl~~ele~l~~~L~ 80 (94)
T 3vlc_E 30 KKYLAKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNLKDEIQ 80 (94)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCTTTCHHHHHHHHHHHHHHHHHTTTHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888999988887 478888888888887766544
No 153
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=34.49 E-value=39 Score=28.31 Aligned_cols=35 Identities=9% Similarity=0.142 Sum_probs=17.5
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 169 PKEKSSEAWSMISKLTEEKTSAMQQNQKLRQELEFVRKE 207 (238)
Q Consensus 169 ~~~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~~ 207 (238)
+.++..++.+++..|+.+. .+.+.|++|..+||+.
T Consensus 24 l~~eN~~Lk~e~~~l~~~~----~~~~~l~~En~rLr~l 58 (255)
T 2j5u_A 24 TYTENQHLKERLEELAQLE----SEVADLKKENKDLKES 58 (255)
T ss_dssp --CTTTTHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 4445556666666665442 2334455566666554
No 154
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=34.18 E-value=81 Score=23.01 Aligned_cols=42 Identities=24% Similarity=0.414 Sum_probs=32.4
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026478 167 EVPKEKSSEAWSMISKLTEEKTSAMQQNQKLRQELEFVRKEI 208 (238)
Q Consensus 167 ~~~~~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~~~ 208 (238)
++|++.+.++-+.|.+|.+|+=.+.....+-.-|+..|+.+.
T Consensus 45 ~~L~e~~keLh~~I~~lEeEKYDlE~kv~kq~yEI~eL~~rV 86 (107)
T 1ytz_T 45 DKLRDKAKELWDWLYQLQTEKYDFAEQIKRKKYEIVTLRNRI 86 (107)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHH
Confidence 468889999999999999998777666666566777776554
No 155
>2kes_A Synphilin-1; synphillin, coiled-coil, ANK repeat, disease mutation, parki disease, phosphoprotein, polymorphism, UBL conjugation, Pro binding; NMR {Homo sapiens}
Probab=33.96 E-value=81 Score=19.19 Aligned_cols=32 Identities=19% Similarity=0.185 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 173 SSEAWSMISKLTEEKTSAMQQNQKLRQELEFV 204 (238)
Q Consensus 173 ~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l 204 (238)
+-.+..++.+|+.++.+-.-++-.||..+..|
T Consensus 6 cmslasqvvkltkql~eqt~~rv~lq~qlq~l 37 (48)
T 2kes_A 6 CMSLASQVVKLTKQLKEQTVERVTLQNQLQQF 37 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567788888888777777777788777654
No 156
>1scf_A Stem cell factor; steel factor, KIT ligand, MAST cell growth factor, hormone/growth factor complex; HET: 1PE; 2.20A {Homo sapiens} SCOP: a.26.1.2 PDB: 1exz_A 2e9w_C* 2o27_A 2o26_A
Probab=33.81 E-value=8.7 Score=32.47 Aligned_cols=22 Identities=18% Similarity=0.406 Sum_probs=0.0
Q ss_pred CccHHH--HHHHHHHHHHHHHHhc
Q 026478 215 GFSTVF--VLLIGLLGILVGYLVK 236 (238)
Q Consensus 215 g~~~~~--v~~v~ll~~llG~~~~ 236 (238)
|-+++. +++.+|++++|||.||
T Consensus 210 ~~slq~~~~~l~al~slvigf~~g 233 (273)
T 1scf_A 210 DSSLHWAAMALPALFSLIIGFAFG 233 (273)
T ss_dssp ------------------------
T ss_pred CcchhhHHHHHHHHHHHHHHHHHH
Confidence 444443 4577888888888876
No 157
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=33.51 E-value=94 Score=21.06 Aligned_cols=46 Identities=9% Similarity=0.029 Sum_probs=27.6
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 026478 166 LEVPKEKSSEAWSMISKLTEEKTSAMQQNQKLRQELEFVRKEISKS 211 (238)
Q Consensus 166 ~~~~~~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~~~~~~ 211 (238)
+.+|+..+.+..++|....+.+..+..+......++..|+....+-
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3355556666666666665555556555555566666777665443
No 158
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=33.43 E-value=1.2e+02 Score=21.82 Aligned_cols=32 Identities=13% Similarity=0.204 Sum_probs=19.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 171 EKSSEAWSMISKLTEEKTSAMQQNQKLRQELE 202 (238)
Q Consensus 171 ~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~ 202 (238)
..|..+..++.+|..++.....+..+|++++.
T Consensus 5 ~~~e~lre~l~~le~~~~~~~~e~~~L~~~l~ 36 (97)
T 2eqb_B 5 SNYNQLKEDYNTLKRELSDRDDEVKRLREDIA 36 (97)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 34556666666666666666666666665555
No 159
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=32.95 E-value=54 Score=22.91 Aligned_cols=24 Identities=17% Similarity=0.176 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 175 EAWSMISKLTEEKTSAMQQNQKLR 198 (238)
Q Consensus 175 e~~~~i~~L~eE~~~~~~q~~~L~ 198 (238)
++-..|..+++|+..+.++|..|+
T Consensus 42 ~Lh~~ie~~~eEi~~Lk~en~~L~ 65 (83)
T 1wlq_A 42 KLHKEIEQKDSEIARLRKENKDLA 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555556666666666665554
No 160
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=32.79 E-value=38 Score=22.27 Aligned_cols=21 Identities=24% Similarity=0.589 Sum_probs=17.4
Q ss_pred EEEEEcCCCCeEEEEEeecCC
Q 026478 27 SMQLTNKTDKFVAFKVKTTNP 47 (238)
Q Consensus 27 ~l~L~N~s~~~vaFKVKTT~p 47 (238)
+|++...+.+.+.|||+.|.+
T Consensus 3 ~lkV~~~~g~~v~~~v~~~t~ 23 (72)
T 1wm3_A 3 NLKVAGQDGSVVQFKIKRHTP 23 (72)
T ss_dssp EEEEECTTSCEEEEEECTTSC
T ss_pred EEEEECCCCCEEEEEECCCCh
Confidence 577888888899999988776
No 161
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=32.79 E-value=79 Score=23.26 Aligned_cols=37 Identities=22% Similarity=0.139 Sum_probs=25.0
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 169 PKEKSSEAWSMISKLTEEKTSAMQQNQKLRQELEFVR 205 (238)
Q Consensus 169 ~~~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~ 205 (238)
++.+...+...+.+|+++...++.+...+++++..+.
T Consensus 93 l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~ 129 (133)
T 1fxk_C 93 IKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELL 129 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456667777777777777777777777766665443
No 162
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=31.43 E-value=56 Score=29.46 Aligned_cols=32 Identities=3% Similarity=-0.010 Sum_probs=15.8
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 169 PKEKSSEAWSMISKLTEEKTSAMQQNQKLRQE 200 (238)
Q Consensus 169 ~~~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e 200 (238)
|++++.++.+.+..|.++...+..+++.++++
T Consensus 8 l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~ 39 (412)
T 3u06_A 8 LSTEVVHLRQRTEELLRCNEQQAAELETCKEQ 39 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555444444444433
No 163
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=31.41 E-value=93 Score=23.02 Aligned_cols=34 Identities=26% Similarity=0.320 Sum_probs=24.8
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 169 PKEKSSEAWSMISKLTEEKTSAMQQNQKLRQELE 202 (238)
Q Consensus 169 ~~~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~ 202 (238)
.+..+.++...|..|+-|+.++..++..|...+.
T Consensus 34 ~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~ 67 (129)
T 3tnu_B 34 TKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIA 67 (129)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3566778888888888888887777777755444
No 164
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=31.40 E-value=78 Score=23.52 Aligned_cols=39 Identities=15% Similarity=0.184 Sum_probs=20.7
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 169 PKEKSSEAWSMISKLTEEKTSAMQQNQKLRQELEFVRKE 207 (238)
Q Consensus 169 ~~~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~~ 207 (238)
|..++.++.+.+....+....+..+.++++++...|++.
T Consensus 81 Le~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~ 119 (129)
T 2fxo_A 81 LEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRD 119 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555544444445555555556666666655544
No 165
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=31.39 E-value=74 Score=22.06 Aligned_cols=33 Identities=15% Similarity=0.084 Sum_probs=22.2
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 168 VPKEKSSEAWSMISKLTEEKTSAMQQNQKLRQE 200 (238)
Q Consensus 168 ~~~~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e 200 (238)
++..++..+..+|..|+.+...+..+.+.+++.
T Consensus 24 ~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~r 56 (83)
T 2xdj_A 24 QLQQQLSDNQSDIDSLRGQIQENQYQLNQVVER 56 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 455667777777777777766666666666543
No 166
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=31.24 E-value=25 Score=21.60 Aligned_cols=17 Identities=41% Similarity=0.868 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHhcC
Q 026478 221 VLLIGLLGILVGYLVKT 237 (238)
Q Consensus 221 v~~v~ll~~llG~~~~~ 237 (238)
++++.+++++++.|+++
T Consensus 21 vll~vi~~l~~~~~~RR 37 (44)
T 2jwa_A 21 ILLVVVLGVVFGILIKR 37 (44)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhheeh
Confidence 45666667777777653
No 167
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=30.91 E-value=99 Score=19.27 Aligned_cols=14 Identities=29% Similarity=0.237 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHH
Q 026478 194 NQKLRQELEFVRKE 207 (238)
Q Consensus 194 ~~~L~~e~~~l~~~ 207 (238)
...+.||..+|++-
T Consensus 27 c~~~eQEieRL~~L 40 (48)
T 3vmx_A 27 CSEKEQEIERLNKL 40 (48)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHH
Confidence 33444555565543
No 168
>3fga_D Shugoshin-like 1; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens}
Probab=30.15 E-value=41 Score=20.81 Aligned_cols=19 Identities=37% Similarity=0.340 Sum_probs=12.3
Q ss_pred ccchHHHHHHHHHHHHHHH
Q 026478 170 KEKSSEAWSMISKLTEEKT 188 (238)
Q Consensus 170 ~~k~~e~~~~i~~L~eE~~ 188 (238)
++|+++|++.|-.|+.|..
T Consensus 23 k~Kvr~Aq~~ILqLkrE~q 41 (47)
T 3fga_D 23 KSKVKEAQDIILQLRKECY 41 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4566677777777766643
No 169
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=29.96 E-value=60 Score=26.03 Aligned_cols=23 Identities=13% Similarity=0.244 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 026478 177 WSMISKLTEEKTSAMQQNQKLRQ 199 (238)
Q Consensus 177 ~~~i~~L~eE~~~~~~q~~~L~~ 199 (238)
...|..|+.+...|.+||++|+.
T Consensus 160 L~~i~~L~a~N~hLqkENeRL~~ 182 (186)
T 3q4f_C 160 LDTIAENQAKNEHLQKENERLLR 182 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444454444444444444433
No 170
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=29.17 E-value=87 Score=22.80 Aligned_cols=42 Identities=26% Similarity=0.454 Sum_probs=31.8
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026478 167 EVPKEKSSEAWSMISKLTEEKTSAMQQNQKLRQELEFVRKEI 208 (238)
Q Consensus 167 ~~~~~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~~~ 208 (238)
++|++.+.++-+-|.+|.+|+=.+.....+-.-|+..|+.+.
T Consensus 45 ~~L~e~~keLh~~I~~LEeEKYDlE~kv~kq~yEI~eL~~rV 86 (106)
T 1j1d_B 45 DQLREKAKELWQTIYNLEAEKFDLQEKFKQQKYEINVLRNRI 86 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhHHHHHHHHHH
Confidence 468888999999999999997777666665556677776554
No 171
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=29.11 E-value=95 Score=20.71 Aligned_cols=39 Identities=13% Similarity=0.046 Sum_probs=23.6
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 169 PKEKSSEAWSMISKLTEEKTSAMQQNQKLRQELEFVRKE 207 (238)
Q Consensus 169 ~~~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~~ 207 (238)
+.+.+..-..-|..|+.++..-..++++|+.+++.++..
T Consensus 16 ~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qsV 54 (67)
T 1zxa_A 16 FAKILMLKEERIKELEKRLSEKEEEIQELKRKLHKCQSV 54 (67)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444455556667666666677777788777766544
No 172
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=28.72 E-value=85 Score=25.00 Aligned_cols=31 Identities=23% Similarity=0.309 Sum_probs=22.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 172 KSSEAWSMISKLTEEKTSAMQQNQKLRQELE 202 (238)
Q Consensus 172 k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~ 202 (238)
..++++.++.+|++++....+++..++++++
T Consensus 136 tV~kLqkeiD~LEDeL~~eKek~k~i~~eLD 166 (175)
T 3mud_A 136 TTAKNEKSIDDLEEKVAHAKEENLNMHQMLD 166 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777777777777777777777777766
No 173
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=28.63 E-value=1.1e+02 Score=19.25 Aligned_cols=32 Identities=16% Similarity=0.149 Sum_probs=19.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 171 EKSSEAWSMISKLTEEKTSAMQQNQKLRQELE 202 (238)
Q Consensus 171 ~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~ 202 (238)
+++.++...+..|..+...|..+...|+.+..
T Consensus 4 aki~~Lss~V~~L~~kVdqLssdV~al~~~v~ 35 (52)
T 1jcd_A 4 AKADQASSDAQTANAKADQASNDANAARSDAQ 35 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666777776666666666666655444
No 174
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=28.63 E-value=53 Score=22.93 Aligned_cols=22 Identities=23% Similarity=0.546 Sum_probs=18.5
Q ss_pred EEEEEEcCCCCeEEEEEeecCC
Q 026478 26 CSMQLTNKTDKFVAFKVKTTNP 47 (238)
Q Consensus 26 ~~l~L~N~s~~~vaFKVKTT~p 47 (238)
-+|++...+.+.|.|||+.|.+
T Consensus 6 i~ikVk~~~g~~v~~~vk~~t~ 27 (91)
T 2io0_B 6 INLKVAGQDGSVVQFKIKRHTP 27 (91)
T ss_dssp EEEEEECTTSCEEEEEEETTSC
T ss_pred EEEEEECCCCCEEEEEECCCCh
Confidence 4788888888899999998876
No 175
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=28.36 E-value=1.4e+02 Score=21.03 Aligned_cols=28 Identities=11% Similarity=0.210 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 175 EAWSMISKLTEEKTSAMQQNQKLRQELE 202 (238)
Q Consensus 175 e~~~~i~~L~eE~~~~~~q~~~L~~e~~ 202 (238)
++.+++..|..|+..+..+...++.|..
T Consensus 22 ~L~~eL~~lEke~~~l~~el~~le~E~~ 49 (96)
T 3q8t_A 22 RLIQELEDVEKNRKVVAENLEKVQAEAE 49 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444443333
No 176
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=27.94 E-value=1e+02 Score=22.86 Aligned_cols=32 Identities=25% Similarity=0.264 Sum_probs=18.1
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 170 KEKSSEAWSMISKLTEEKTSAMQQNQKLRQEL 201 (238)
Q Consensus 170 ~~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~ 201 (238)
+..+.++...|..|+-|+.++..++..|...+
T Consensus 37 k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l 68 (131)
T 3tnu_A 37 KSEISELRRTMQNLEIELQSQLSMKASLENSL 68 (131)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 45556667777777777666666666664443
No 177
>2iaa_C Azurin; quinoprotein, tryptophan tryptophylquinone, cupredoxin, electron transfer, oxidoreductase/electron transport comple; HET: TRQ; 1.95A {Alcaligenes faecalis} PDB: 2h47_C* 2h3x_C*
Probab=27.83 E-value=80 Score=23.45 Aligned_cols=63 Identities=13% Similarity=0.113 Sum_probs=36.3
Q ss_pred ceEEeCCeeeecccCCCceeEEEEEEcCCCCe-----EEEEEeecC-------------C-CcEE------EeCCceeeC
Q 026478 6 LVNIQPSELKFPFELKKQSSCSMQLTNKTDKF-----VAFKVKTTN-------------P-KKYC------VRPNTGIIL 60 (238)
Q Consensus 6 lL~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~-----vaFKVKTT~-------------p-~~Y~------VrP~~G~I~ 60 (238)
-+.++|.+|..+.+. -+-+++++|....+ --|-+-+.+ + ..|. +--..++|.
T Consensus 11 ~m~F~p~~i~V~k~G---~~vtv~~~N~g~~p~~~m~Hn~vi~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~t~~l~ 87 (128)
T 2iaa_C 11 SMQFNTKSIVVDKTC---KEFTINLKHTGKLPKAAMGHNVVVSKKSDESAVATDGMKAGLNNDYVKAGDERVIAHTSVIG 87 (128)
T ss_dssp TSCBSCSEEEECTTC---SEEEEEEEECSCSCHHHHCBCCEEEETTHHHHHHHHHHHHCGGGTTSCTTCTTEEEECCCBC
T ss_pred CceEecCEEEEecCC---cEEEEEEEECCCCcccCCCceEEEccccchhhHHHhhhhccccccccccccchhhccceeeC
Confidence 355666666663321 24589999998543 344444322 0 0111 111246789
Q ss_pred CCCEEEEEEEe
Q 026478 61 PRTSCAVTVTM 71 (238)
Q Consensus 61 P~~s~~V~V~l 71 (238)
||++..|++..
T Consensus 88 pGes~~vtf~~ 98 (128)
T 2iaa_C 88 GGETDSVTFDV 98 (128)
T ss_dssp TTCEEEEEEES
T ss_pred CCCEEEEEEec
Confidence 99999999975
No 178
>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis}
Probab=27.79 E-value=1.4e+02 Score=22.13 Aligned_cols=32 Identities=22% Similarity=0.413 Sum_probs=24.1
Q ss_pred eEEeCCeeeecccCCCceeEEEEEEcCCCCeEEEEEee
Q 026478 7 VNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKT 44 (238)
Q Consensus 7 L~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKT 44 (238)
+.|+|.. .+..+.-.|+|+|+++.++-+-.-+
T Consensus 9 ~~v~~~~------~g~~v~~~ltv~N~s~~~v~l~f~S 40 (120)
T 3isy_A 9 LSIDAIQ------EPEQIKFNMSLKNQSERAIEFQFST 40 (120)
T ss_dssp EEEEEEE------CSSCEEEEEEEEECSSSCEEEEESS
T ss_pred EEEeecc------CCCeEEEEEEEEcCCCCcEEEEeCC
Confidence 4555544 3456788999999999999988754
No 179
>3jt0_A Lamin-B1; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, HR5546A, LMNB1_human; 2.39A {Homo sapiens}
Probab=27.55 E-value=1e+02 Score=23.64 Aligned_cols=43 Identities=5% Similarity=0.022 Sum_probs=28.4
Q ss_pred EEEEEEcCCCCeEE---EEEeecCCCc--EEEeCCceeeCCCCEEEEE
Q 026478 26 CSMQLTNKTDKFVA---FKVKTTNPKK--YCVRPNTGIILPRTSCAVT 68 (238)
Q Consensus 26 ~~l~L~N~s~~~va---FKVKTT~p~~--Y~VrP~~G~I~P~~s~~V~ 68 (238)
..++|.|.+++.+. |+|+-...+. .+.-|..=+|.||.+++|-
T Consensus 38 kfV~L~N~s~~~~~LgGW~L~r~v~g~~~~y~FP~~~~L~pg~~VtVw 85 (144)
T 3jt0_A 38 KFIRLKNTSEQDQPMGGWEMIRKIGDTSVSYKYTSRYVLKAGQTVTIW 85 (144)
T ss_dssp SEEEEEECSSSCEECTTCEEEEEETTEEEEEECCTTCEECTTCEEEEE
T ss_pred CEEEEEECCCCceecCCcEEEEEeCCCceEEEcCCCcEECCCCEEEEE
Confidence 47899999887764 6676443322 2344555589999987653
No 180
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=27.02 E-value=64 Score=22.27 Aligned_cols=30 Identities=17% Similarity=0.237 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 173 SSEAWSMISKLTEEKTSAMQQNQKLRQELE 202 (238)
Q Consensus 173 ~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~ 202 (238)
+.++.+.+..+..+...+.++...|++++.
T Consensus 8 ~e~~~~klq~~E~rN~~Le~~v~~le~~Le 37 (79)
T 3cvf_A 8 REETQQKVQDLETRNAELEHQLRAMERSLE 37 (79)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444
No 181
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=26.71 E-value=75 Score=22.58 Aligned_cols=36 Identities=11% Similarity=0.076 Sum_probs=21.7
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 169 PKEKSSEAWSMISKLTEEKTSAMQQNQKLRQELEFV 204 (238)
Q Consensus 169 ~~~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l 204 (238)
++.++.++...+..|++++..+..+...+++.+..+
T Consensus 8 ~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l 43 (112)
T 1l8d_A 8 LETKKTTIEEERNEITQRIGELKNKIGDLKTAIEEL 43 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555666666666666666666666666665555
No 182
>1jb0_X Photosystem I subunit PSAX; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.20.1 PDB: 3pcq_X*
Probab=26.69 E-value=63 Score=18.58 Aligned_cols=18 Identities=22% Similarity=0.318 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 026478 219 VFVLLIGLLGILVGYLVK 236 (238)
Q Consensus 219 ~~v~~v~ll~~llG~~~~ 236 (238)
|.+++++|=-++.||+|+
T Consensus 15 WalllLaINflVAayYFh 32 (35)
T 1jb0_X 15 WAVLLLAINFLVAAYYFA 32 (35)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 667788888888899886
No 183
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=26.54 E-value=1.7e+02 Score=21.32 Aligned_cols=25 Identities=8% Similarity=0.009 Sum_probs=13.2
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHH
Q 026478 170 KEKSSEAWSMISKLTEEKTSAMQQN 194 (238)
Q Consensus 170 ~~k~~e~~~~i~~L~eE~~~~~~q~ 194 (238)
++++.++.+++..|+.....+.+||
T Consensus 17 ~~ei~~L~~ei~eLk~~ve~lEkER 41 (106)
T 4e61_A 17 QETIGSLNEEIEQYKGTVSTLEIER 41 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555554
No 184
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=26.29 E-value=1.4e+02 Score=21.87 Aligned_cols=29 Identities=14% Similarity=0.150 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 174 SEAWSMISKLTEEKTSAMQQNQKLRQELE 202 (238)
Q Consensus 174 ~e~~~~i~~L~eE~~~~~~q~~~L~~e~~ 202 (238)
.++.+...+|+.+...+.++...|+....
T Consensus 4 ~~l~~~~q~l~~~~~~l~~~~~~l~~~i~ 32 (133)
T 1fxk_C 4 AEIVAQLNIYQSQVELIQQQMEAVRATIS 32 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555554443
No 185
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=25.96 E-value=1.6e+02 Score=20.24 Aligned_cols=29 Identities=17% Similarity=0.313 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 174 SEAWSMISKLTEEKTSAMQQNQKLRQELE 202 (238)
Q Consensus 174 ~e~~~~i~~L~eE~~~~~~q~~~L~~e~~ 202 (238)
.++..+|..++.++..+.-|...++...+
T Consensus 3 ~eLr~qi~~l~~e~~~l~~e~dn~~~~~e 31 (86)
T 3swk_A 3 RELRRQVDQLTNDKARVEVERDNLAEDIM 31 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 34555555555555555555544444433
No 186
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=25.91 E-value=1.1e+02 Score=18.31 Aligned_cols=20 Identities=15% Similarity=0.239 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 026478 175 EAWSMISKLTEEKTSAMQQN 194 (238)
Q Consensus 175 e~~~~i~~L~eE~~~~~~q~ 194 (238)
++..++..|..|...+...|
T Consensus 7 qlenevaslenenetlkkkn 26 (49)
T 3he5_A 7 QLENEVASLENENETLKKKN 26 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccHHHHHhc
Confidence 44455555555544444433
No 187
>1ifr_A Lamin A/C; immunoglobulin, immune system; 1.40A {Homo sapiens} SCOP: b.1.16.1 PDB: 1ivt_A 3gef_A
Probab=25.88 E-value=1.4e+02 Score=21.96 Aligned_cols=43 Identities=16% Similarity=0.152 Sum_probs=28.7
Q ss_pred EEEEEEcCCCCeEE---EEEeecC---CCcEEEeCCceeeCCCCEEEEE
Q 026478 26 CSMQLTNKTDKFVA---FKVKTTN---PKKYCVRPNTGIILPRTSCAVT 68 (238)
Q Consensus 26 ~~l~L~N~s~~~va---FKVKTT~---p~~Y~VrP~~G~I~P~~s~~V~ 68 (238)
..++|.|.+++.+. |+++-.. +..-+.-|..=+|.||.++.|-
T Consensus 19 ~fV~l~N~s~~~~~L~gW~l~r~v~~~~~~~y~Fp~~~~L~pg~~vtIw 67 (121)
T 1ifr_A 19 KFVRLRNKSNEDQSMGNWQIKRQNGDDPLLTYRFPPKFTLKAGQVVTIW 67 (121)
T ss_dssp SEEEEEECSSSCEECTTCEEEEEETTSCCEEEECCSSCEECTTCEEEEE
T ss_pred CEEEEEeCCCCccccCCCEEEEEcCCCccEEEEeCCCcEECCCCEEEEE
Confidence 47899999887664 6777552 2233345666789999986543
No 188
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=25.67 E-value=71 Score=22.38 Aligned_cols=15 Identities=20% Similarity=0.118 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHH
Q 026478 176 AWSMISKLTEEKTSA 190 (238)
Q Consensus 176 ~~~~i~~L~eE~~~~ 190 (238)
+.+.|..|++++..+
T Consensus 6 L~~~i~~L~~q~~~L 20 (85)
T 3viq_B 6 LESRVHLLEQQKEQL 20 (85)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444443333
No 189
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=25.62 E-value=85 Score=21.88 Aligned_cols=26 Identities=19% Similarity=0.181 Sum_probs=18.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 172 KSSEAWSMISKLTEEKTSAMQQNQKL 197 (238)
Q Consensus 172 k~~e~~~~i~~L~eE~~~~~~q~~~L 197 (238)
=|+++.++|..|+.|...+.++...+
T Consensus 33 IL~ksvdYI~~Lq~e~~r~~e~e~r~ 58 (83)
T 4ath_A 33 ILKASVDYIRKLQREQQRAKDLENRQ 58 (83)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888888777666555443
No 190
>1p4u_A ADP-ribosylation factor binding protein GGA3; protein transport; 2.20A {Homo sapiens} SCOP: b.1.10.2 PDB: 1om9_A 1na8_A 2dwy_A 2dwx_A
Probab=25.55 E-value=1.3e+02 Score=23.05 Aligned_cols=80 Identities=11% Similarity=0.224 Sum_probs=43.4
Q ss_pred EEEEEcCCCC-eEEEEEeecCCCcEEEe--CCce-eeCCCCE------EEEEEEecccccCCCCCCCCCeEEEEEEeCCC
Q 026478 27 SMQLTNKTDK-FVAFKVKTTNPKKYCVR--PNTG-IILPRTS------CAVTVTMQAQKEAPPDFQCKDKFLLLSVVAPD 96 (238)
Q Consensus 27 ~l~L~N~s~~-~vaFKVKTT~p~~Y~Vr--P~~G-~I~P~~s------~~V~V~lq~~~~~p~~~~~kdKFlVqs~~v~~ 96 (238)
.++.+|.+.. ---|.+..-.|+-|.++ |.+| .|.|+.. ++-.+.+..... ...+=|+.|.+..-..
T Consensus 58 ~~~~~N~s~~~is~f~fQaAVPK~~kLqL~ppSg~~L~p~~~~~~~~~ItQ~m~v~n~~~----~~l~LR~klsY~~~g~ 133 (153)
T 1p4u_A 58 VVSMLNMAPLPVKSIVLQAAAPKSMKVKLQPPSGTELSPFSPIQPPAAITQVMLLANPLK----EKVRLRYKLTFALGEQ 133 (153)
T ss_dssp EEEEEECSSSCBEEEEEEEECBTTSEEEECCCSCSCBCCCBTTBCCCEEEEEEEEECTTC----CCCCEEEEEEEEETTE
T ss_pred EEEEEeCCCCccccEEEEEEcCcccEEEeeCCCCCccCCCCcCCCCCCEEEEEEEeCCCC----CCEEEEEEEEEEECCe
Confidence 6677788764 45577777777766665 6666 4777553 333333322211 2345666666665432
Q ss_pred ----CCCcccCCC-Ccccc
Q 026478 97 ----GATAKDIGP-DMFTK 110 (238)
Q Consensus 97 ----~~~~~d~~~-~~f~~ 110 (238)
..+..+++. ++|..
T Consensus 134 ~~~E~~~v~~fP~~~~~~~ 152 (153)
T 1p4u_A 134 LSTEVGEVDQFPPVEQWGN 152 (153)
T ss_dssp EEEEEEEECCCCCGGGTTC
T ss_pred EEEEEEEECCCCChhhhcc
Confidence 112235554 66753
No 191
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=25.37 E-value=1.1e+02 Score=27.43 Aligned_cols=27 Identities=11% Similarity=0.095 Sum_probs=14.8
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHH
Q 026478 167 EVPKEKSSEAWSMISKLTEEKTSAMQQ 193 (238)
Q Consensus 167 ~~~~~k~~e~~~~i~~L~eE~~~~~~q 193 (238)
.+++++..++..++..+++|+..+.+|
T Consensus 13 ~~~~~~~~~l~~~~~~~~~~~~~~~~~ 39 (412)
T 3u06_A 13 VHLRQRTEELLRCNEQQAAELETCKEQ 39 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555556666666666655554444
No 192
>2ccw_A Azurin II, AZN-2; electron transport (cuproprotein), alcaligenes xylosoxidans, electron transfer, cupredoxin, electron transport; 1.13A {Alcaligenes xylosoxydans} SCOP: b.6.1.1 PDB: 1dz0_A 1dyz_A 1aiz_A 1azb_A 1azc_A 1uri_A 2aza_A 1a4a_A 1a4b_A 1a4c_A
Probab=25.34 E-value=83 Score=23.36 Aligned_cols=63 Identities=16% Similarity=0.126 Sum_probs=36.1
Q ss_pred ceEEeCCeeeecccCCCceeEEEEEEcCCCCe-----EEEEEeecC-------------C-CcEE------EeCCceeeC
Q 026478 6 LVNIQPSELKFPFELKKQSSCSMQLTNKTDKF-----VAFKVKTTN-------------P-KKYC------VRPNTGIIL 60 (238)
Q Consensus 6 lL~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~-----vaFKVKTT~-------------p-~~Y~------VrP~~G~I~ 60 (238)
.+..+|.+|..+.+. -.-+++++|...-+ --|-|-+.. + ..|. +--..++|.
T Consensus 12 ~m~F~p~~i~V~k~G---~~vtv~~~N~g~~p~~~m~H~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~l~ 88 (129)
T 2ccw_A 12 AMQYNVKEIVVDKSC---KQFTMHLKHVGKMAKVAMGHNLVLTKDADKQAVATDGMGAGLAQDYVKAGDTRVIAHTKVIG 88 (129)
T ss_dssp TSCBSCSEEEECTTC---SEEEEEEEECSCCCHHHHCBCCEEEEGGGHHHHHHHHHHHCGGGTTSCTTCTTEEEECCCBC
T ss_pred CccEecceEEEecCC---CEEEEEEEECCCcccccCcceEEEcCccchhhhHHHhhhhcccccccccccccceeeeeEEC
Confidence 345566666653321 24589999998653 445554432 0 0110 111245789
Q ss_pred CCCEEEEEEEe
Q 026478 61 PRTSCAVTVTM 71 (238)
Q Consensus 61 P~~s~~V~V~l 71 (238)
||++..|+++.
T Consensus 89 pGet~svtf~~ 99 (129)
T 2ccw_A 89 GGESDSVTFDV 99 (129)
T ss_dssp TTCEEEEEEEG
T ss_pred CCCEEEEEEec
Confidence 99999999876
No 193
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=25.21 E-value=1.4e+02 Score=20.14 Aligned_cols=19 Identities=32% Similarity=0.340 Sum_probs=10.1
Q ss_pred ccccchHHHHHHHHHHHHH
Q 026478 168 VPKEKSSEAWSMISKLTEE 186 (238)
Q Consensus 168 ~~~~k~~e~~~~i~~L~eE 186 (238)
++-.++.++..++.++++|
T Consensus 15 el~~klk~~~ee~~~~~ee 33 (71)
T 1uix_A 15 ELNNKLKEAQEQLSRLKDE 33 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555544
No 194
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=25.11 E-value=72 Score=23.09 Aligned_cols=26 Identities=12% Similarity=0.145 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 174 SEAWSMISKLTEEKTSAMQQNQKLRQ 199 (238)
Q Consensus 174 ~e~~~~i~~L~eE~~~~~~q~~~L~~ 199 (238)
+++.+++..|++|...++++++.|++
T Consensus 10 ~~l~~~~~~l~~~i~~lkeel~~L~~ 35 (109)
T 2wg5_A 10 KQLEDKVEELLSKNYHLENEVARLRS 35 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 35566666666666666666777653
No 195
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=25.03 E-value=97 Score=24.95 Aligned_cols=19 Identities=16% Similarity=0.316 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 026478 180 ISKLTEEKTSAMQQNQKLR 198 (238)
Q Consensus 180 i~~L~eE~~~~~~q~~~L~ 198 (238)
++.|++|...++..+..|+
T Consensus 90 ~~~Lq~el~~l~~~~~~l~ 108 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQLH 108 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555555444444444443
No 196
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=24.86 E-value=87 Score=21.15 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 178 SMISKLTEEKTSAMQQNQKLRQEL 201 (238)
Q Consensus 178 ~~i~~L~eE~~~~~~q~~~L~~e~ 201 (238)
+.+..|++|+.+--+|...|++.+
T Consensus 18 ~~l~~Lr~eL~~Ke~eI~~L~e~i 41 (75)
T 3a7o_A 18 NTLAILQKELKSKEQEIRRLKEVI 41 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666655555555555443
No 197
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=24.82 E-value=93 Score=16.97 Aligned_cols=14 Identities=21% Similarity=0.413 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHH
Q 026478 191 MQQNQKLRQELEFV 204 (238)
Q Consensus 191 ~~q~~~L~~e~~~l 204 (238)
..||++|+...+.|
T Consensus 12 eaenkqlkakveel 25 (31)
T 1p9i_A 12 EAENKQLKAKVEEL 25 (31)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34467776665544
No 198
>3ndz_E Endoglucanase D; cellotriose, xylanase, carbohydrate binding D glucanase, hydrolase; HET: CT3; 2.08A {Clostridium cellulovorans} PDB: 3ndy_E*
Probab=24.79 E-value=1.9e+02 Score=20.67 Aligned_cols=49 Identities=12% Similarity=0.201 Sum_probs=32.6
Q ss_pred eeEEEEEEcCCCCeEE-EEEee-----------------cCCCcEEEeCC--ceeeCC-CCEEEEEEEec
Q 026478 24 SSCSMQLTNKTDKFVA-FKVKT-----------------TNPKKYCVRPN--TGIILP-RTSCAVTVTMQ 72 (238)
Q Consensus 24 ~~~~l~L~N~s~~~va-FKVKT-----------------T~p~~Y~VrP~--~G~I~P-~~s~~V~V~lq 72 (238)
....++|+|.++.+|. ++|.= .+-..|.|+|. -|-|.| |.++.+-+.-.
T Consensus 17 f~~~vtVtN~g~~~i~gWtv~~~~p~g~~it~~Wna~~s~sG~~vt~~n~~wN~~la~~G~s~~fGf~g~ 86 (107)
T 3ndz_E 17 ASVNVTIKNNGTTPINGWTLKWTMPINQTITNMWSASFVASGTTLSVTNAGYNGTIAANGGTQSFGFNIN 86 (107)
T ss_dssp EEEEEEEEECSSSCEESCEEEEECCTTEEEEEEESEEEEEETTEEEEEECSTTCEECTTTEEEEEEEEEE
T ss_pred EEEEEEEEeCCCCcccCcEEEEEcCCCCEEecccceEEEecCCEEEEEECCcccccCCCCccEEEEEEEe
Confidence 4578888888765543 33322 22467899875 489999 99887776543
No 199
>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo}
Probab=24.20 E-value=3e+02 Score=25.78 Aligned_cols=50 Identities=16% Similarity=0.178 Sum_probs=36.8
Q ss_pred eeEEEEEEcCCCCeEEEEEeecCCCc--EEEeCCceee-CCCCEEEEEEEecc
Q 026478 24 SSCSMQLTNKTDKFVAFKVKTTNPKK--YCVRPNTGII-LPRTSCAVTVTMQA 73 (238)
Q Consensus 24 ~~~~l~L~N~s~~~vaFKVKTT~p~~--Y~VrP~~G~I-~P~~s~~V~V~lq~ 73 (238)
.+-+-+++|.....-.|+++.+.|.- -.|.|..=.+ ..|++..++|++..
T Consensus 539 ~t~~rtvtnvg~~~~ty~~~v~~p~gv~v~V~P~~l~f~~~~~~~~~~vt~~~ 591 (621)
T 3vta_A 539 QYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLGDRKSFTLTVRG 591 (621)
T ss_dssp EEEEEEEEECSSSCEEEEEEEECCSSEEEEEESSEEEECSTTCEEEEEEEEEE
T ss_pred EEEEEEEEccCCCCeEEEEEEECCCCcEEEEecCEEEEcCCCcEEEEEEEEEe
Confidence 44456799999999999999888864 4566776544 55777777777753
No 200
>3iyn_Q Protein IX, PIX, hexon-associated protein; cryoem, 3D reconstruction, FULL-ATOM model interaction network, capsid protein, hexon protein; 3.60A {Human adenovirus 5}
Probab=24.16 E-value=80 Score=23.76 Aligned_cols=20 Identities=20% Similarity=0.202 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 026478 188 TSAMQQNQKLRQELEFVRKE 207 (238)
Q Consensus 188 ~~~~~q~~~L~~e~~~l~~~ 207 (238)
..+.+|.+.|-++++.|+.+
T Consensus 108 e~ls~qL~~ls~~v~~L~~q 127 (140)
T 3iyn_Q 108 DSLTRELNVVSQQLLDLRQQ 127 (140)
T ss_dssp HHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555544
No 201
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=24.13 E-value=1e+02 Score=26.85 Aligned_cols=40 Identities=18% Similarity=0.044 Sum_probs=29.0
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 168 VPKEKSSEAWSMISKLTEEKTSAMQQNQKLRQELEFVRKE 207 (238)
Q Consensus 168 ~~~~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~~ 207 (238)
.+++++..+.++|..|++...++..+...|++.+..|+..
T Consensus 8 ~lE~~Il~~~~~i~~L~~~l~~~~~ki~~L~~~i~~l~~~ 47 (319)
T 1fzc_C 8 KYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQ 47 (319)
T ss_dssp --CTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556667778888888888888888888888777766554
No 202
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=24.00 E-value=1.8e+02 Score=20.48 Aligned_cols=29 Identities=10% Similarity=0.157 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 176 AWSMISKLTEEKTSAMQQNQKLRQELEFV 204 (238)
Q Consensus 176 ~~~~i~~L~eE~~~~~~q~~~L~~e~~~l 204 (238)
...++..++++...+..+...++.++..|
T Consensus 69 ~~~~l~~l~~~i~~l~~~i~~l~~~~~~l 97 (112)
T 1l8d_A 69 YHLDLNNSKNTLAKLIDRKSELERELRRI 97 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444433
No 203
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=23.92 E-value=1.4e+02 Score=23.30 Aligned_cols=6 Identities=33% Similarity=0.506 Sum_probs=2.2
Q ss_pred HHHHHH
Q 026478 182 KLTEEK 187 (238)
Q Consensus 182 ~L~eE~ 187 (238)
+|++|+
T Consensus 9 ~Le~Ek 14 (155)
T 2aze_A 9 NLEVER 14 (155)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 204
>3rmi_A Chorismate mutase protein; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid; 2.40A {Bartonella henselae}
Probab=23.90 E-value=1.7e+02 Score=21.16 Aligned_cols=33 Identities=12% Similarity=0.101 Sum_probs=19.7
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 166 LEVPKEKSSEAWSMISKLTEEKTSAMQQNQKLR 198 (238)
Q Consensus 166 ~~~~~~k~~e~~~~i~~L~eE~~~~~~q~~~L~ 198 (238)
+.++..+.++.+.+|..|=.+|..+.++.-.++
T Consensus 14 L~~lR~~ID~ID~~il~LL~~R~~~~~~I~~~K 46 (114)
T 3rmi_A 14 LAYLRQSIDNFDITLIHILAERFRCTQAIGRLK 46 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666666666665554
No 205
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=23.38 E-value=75 Score=22.20 Aligned_cols=23 Identities=22% Similarity=0.520 Sum_probs=17.9
Q ss_pred eEEEEEEcCCCCeEEEEEeecCC
Q 026478 25 SCSMQLTNKTDKFVAFKVKTTNP 47 (238)
Q Consensus 25 ~~~l~L~N~s~~~vaFKVKTT~p 47 (238)
.-+|++...+.+.|.|||+.+.+
T Consensus 7 ~i~ikVk~~~g~~i~~~v~~~t~ 29 (94)
T 2io1_B 7 HINLKVAGQDGSVVQFKIKRHTP 29 (94)
T ss_dssp EEEEEEECTTSCEEEEEEETTSC
T ss_pred eEEEEEECCCCCEEEEEECCCCH
Confidence 45777887778888899987766
No 206
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=23.25 E-value=1.7e+02 Score=20.63 Aligned_cols=20 Identities=20% Similarity=0.260 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 026478 185 EEKTSAMQQNQKLRQELEFV 204 (238)
Q Consensus 185 eE~~~~~~q~~~L~~e~~~l 204 (238)
.|+..+-.++..+..++..+
T Consensus 25 ~eL~~lEke~~~l~~el~~l 44 (96)
T 3q8t_A 25 QELEDVEKNRKVVAENLEKV 44 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHH
Confidence 33333333333333333333
No 207
>2e9g_A AP-1 complex subunit gamma-2; beta-sandwich, immunoglobulin-like fold, adaptin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.16 E-value=47 Score=24.89 Aligned_cols=67 Identities=13% Similarity=0.102 Sum_probs=37.7
Q ss_pred eeEEEEEEcCCCC-eEEEEEeecCCCcEEEe--CCce-eeCCCCE--EEEEEEecccccCCCCCCCCCeEEEEEEeC
Q 026478 24 SSCSMQLTNKTDK-FVAFKVKTTNPKKYCVR--PNTG-IILPRTS--CAVTVTMQAQKEAPPDFQCKDKFLLLSVVA 94 (238)
Q Consensus 24 ~~~~l~L~N~s~~-~vaFKVKTT~p~~Y~Vr--P~~G-~I~P~~s--~~V~V~lq~~~~~p~~~~~kdKFlVqs~~v 94 (238)
..-.++.+|.+.. ---|.+..-.|+-|.++ |.+| .|.|+.. ++-.+.+... .....+=|+.|.+..-
T Consensus 40 ~~i~~~~~N~s~~~it~f~fQaAVPK~~kLqL~p~Sg~~l~p~~~~~ItQ~~~i~n~----~~~~l~lR~klsY~~~ 112 (131)
T 2e9g_A 40 LLITITATNFSEGDVTHFICQAAVPKSLQLQLQAPSGNTVPARGGLPITQLFRILNP----NKAPLRLKLRLTYDHF 112 (131)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEECCTTSCCEECCCSCSEECTTTCCCBCCCEEEECT----TCCCCCEEEEEEEECS
T ss_pred EEEEEEEEECCCCccccEEEEEEcCcccEEEeeCCCCCCcCCCCCCCEEEEEEEeCC----CCCCEEEEEEEEEEEC
Confidence 5567788898764 44577777777765554 6666 5888544 2222222211 1113556677766654
No 208
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=22.92 E-value=2e+02 Score=20.12 Aligned_cols=38 Identities=26% Similarity=0.216 Sum_probs=23.9
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 170 KEKSSEAWSMISKLTEEKTSAMQQNQKLRQELEFVRKE 207 (238)
Q Consensus 170 ~~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~~ 207 (238)
++++..++.-.+.+=+-...|-+||..|..+...++..
T Consensus 8 Ke~mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~~~ 45 (93)
T 3s4r_A 8 KVELQELNDRFANLIDKVRFLEQQNKILLAELEQLKGQ 45 (93)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34555555555555555566777888887777766543
No 209
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=22.47 E-value=1.3e+02 Score=21.24 Aligned_cols=34 Identities=15% Similarity=0.177 Sum_probs=16.9
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 169 PKEKSSEAWSMISKLTEEKTSAMQQNQKLRQELE 202 (238)
Q Consensus 169 ~~~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~ 202 (238)
|+.+...+...|.+|.++...+..+...++.++-
T Consensus 75 L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~ 108 (117)
T 2zqm_A 75 LKEKIETLEVRLNALERQEKKLNEKLKELTAQIQ 108 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555544444433
No 210
>1klf_A FIMC chaperone, chaperone protein FIMC; adhesin-chaperone complex, mannose-bound, chaperone/adhesin complex complex; HET: MAN; 2.79A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1 PDB: 1kiu_A* 3rfz_C 1qun_A 1bf8_A 1ze3_C 3bwu_C 3jwn_C
Probab=22.44 E-value=1.8e+02 Score=23.31 Aligned_cols=39 Identities=15% Similarity=0.281 Sum_probs=28.1
Q ss_pred EEEEEcCCCCeEEEEEeecCCCcEEEeCCceeeCCCCEEEEEE
Q 026478 27 SMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTV 69 (238)
Q Consensus 27 ~l~L~N~s~~~vaFKVKTT~p~~Y~VrP~~G~I~P~~s~~V~V 69 (238)
.|+++|+|..++.|-=-+..-+.+ . .|.|.|+++..+.+
T Consensus 139 ~l~v~Nptpy~vtl~~l~~~g~~~---~-~~mv~P~s~~~~~l 177 (205)
T 1klf_A 139 SLTLINPTPYYLTVTELNAGTRVL---E-NALVPPMGESTVKL 177 (205)
T ss_dssp EEEEEECSSSCEEEEEEESSSSBC---C-CEEECTTEEEEEEC
T ss_pred EEEEECCCCCEEEEEEEEeCCccc---c-cceEcCCCcceeec
Confidence 699999999999886323333333 2 37999999988764
No 211
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=22.37 E-value=81 Score=21.91 Aligned_cols=24 Identities=21% Similarity=0.505 Sum_probs=18.8
Q ss_pred eeEEEEEEcCCCCeEEEEEeecCC
Q 026478 24 SSCSMQLTNKTDKFVAFKVKTTNP 47 (238)
Q Consensus 24 ~~~~l~L~N~s~~~vaFKVKTT~p 47 (238)
..-.|++...+...+.|||+.|.+
T Consensus 16 ~~i~ikV~~~~g~~i~~~v~~~t~ 39 (93)
T 2d07_B 16 DHINLKVAGQDGSVVQFKIKRHTP 39 (93)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSC
T ss_pred CeEEEEEECCCCCEEEEEEccCCH
Confidence 346788888778889999988776
No 212
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=22.34 E-value=93 Score=27.14 Aligned_cols=35 Identities=23% Similarity=0.150 Sum_probs=19.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 172 KSSEAWSMISKLTEEKTSAMQQNQKLRQELEFVRK 206 (238)
Q Consensus 172 k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~ 206 (238)
.+....++|..|++...++..+...|++++..|+.
T Consensus 20 ~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~ 54 (323)
T 1lwu_C 20 IGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQ 54 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555666666655555556666666555544
No 213
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=22.22 E-value=54 Score=17.51 Aligned_cols=7 Identities=57% Similarity=0.919 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 026478 194 NQKLRQE 200 (238)
Q Consensus 194 ~~~L~~e 200 (238)
|..|+||
T Consensus 9 narlkqe 15 (28)
T 3ra3_B 9 NARLKQE 15 (28)
T ss_dssp HHHHHHH
T ss_pred hhHHHHH
Confidence 3333333
No 214
>1xo8_A AT1G01470; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, unknown function; NMR {Arabidopsis thaliana} SCOP: b.1.25.1
Probab=22.19 E-value=1.8e+02 Score=22.00 Aligned_cols=49 Identities=12% Similarity=0.226 Sum_probs=36.9
Q ss_pred ceeEEEEEEcCCCC-----eEEEEEeecCCCc-EEEeCCceeeCCCCEEEEEEEe
Q 026478 23 QSSCSMQLTNKTDK-----FVAFKVKTTNPKK-YCVRPNTGIILPRTSCAVTVTM 71 (238)
Q Consensus 23 ~~~~~l~L~N~s~~-----~vaFKVKTT~p~~-Y~VrP~~G~I~P~~s~~V~V~l 71 (238)
.....|+++|+.+. -++|.++...-.. --+.|..|.|.++++..|.|-.
T Consensus 40 ~~~~~l~V~NPN~~~lpi~gi~y~l~vng~~lasG~~~~~~~ipa~g~~~v~vpv 94 (151)
T 1xo8_A 40 EYLAKVSVTNPYSHSIPICEISFTFHSAGREIGKGKIPDPGSLKAKDMTALDIPV 94 (151)
T ss_dssp CEEEEEEEECSSSSCCCCEEEEEEEESSSSCEEEEEEEECCCCSSSSEEEEEECC
T ss_pred EEEEEEEEECCCCCCcccccEEEEEEECCEEEEEEecCCCcEECCCCcEEEEEEE
Confidence 35689999999874 5789998754443 3566888999999988877754
No 215
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=22.17 E-value=1.2e+02 Score=22.54 Aligned_cols=12 Identities=17% Similarity=0.315 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 026478 192 QQNQKLRQELEF 203 (238)
Q Consensus 192 ~q~~~L~~e~~~ 203 (238)
.|.+.|+.++..
T Consensus 14 ~~i~~l~~~L~~ 25 (122)
T 3viq_A 14 KEVRNLQEQLIT 25 (122)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 216
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=22.10 E-value=1.7e+02 Score=23.81 Aligned_cols=36 Identities=19% Similarity=0.108 Sum_probs=26.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 172 KSSEAWSMISKLTEEKTSAMQQNQKLRQELEFVRKE 207 (238)
Q Consensus 172 k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~~ 207 (238)
.|.++..+-.+|-+++..+.+++..|++|...|+..
T Consensus 109 AL~eaLeEN~~Lh~~ie~l~eEi~~LkeEn~eLkeL 144 (209)
T 2wvr_A 109 ALYEALKENEKLHKEIEQKDNEIARLKKENKELAEV 144 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666777777777777888888888887777654
No 217
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=21.49 E-value=1.6e+02 Score=18.50 Aligned_cols=37 Identities=16% Similarity=0.015 Sum_probs=22.0
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 168 VPKEKSSEAWSMISKLTEEKTSAMQQNQKLRQELEFV 204 (238)
Q Consensus 168 ~~~~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l 204 (238)
.|-.++.-+..+=..|+.|+.....+..+|..|-..|
T Consensus 7 QL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~m 43 (54)
T 1deb_A 7 QLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNM 43 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhH
Confidence 3434445555566667777666666666666665444
No 218
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=21.29 E-value=1e+02 Score=18.18 Aligned_cols=14 Identities=36% Similarity=0.143 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHH
Q 026478 187 KTSAMQQNQKLRQE 200 (238)
Q Consensus 187 ~~~~~~q~~~L~~e 200 (238)
...+.++|..|..+
T Consensus 22 VR~LE~~N~~Le~~ 35 (39)
T 1gk7_A 22 VRFLEQQNKILLAE 35 (39)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444555555443
No 219
>3n7n_E Monopolin complex subunit LRS4; meiosis, rDNA, replication; 3.90A {Saccharomyces cerevisiae}
Probab=21.18 E-value=20 Score=25.64 Aligned_cols=24 Identities=25% Similarity=0.257 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 175 EAWSMISKLTEEKTSAMQQNQKLR 198 (238)
Q Consensus 175 e~~~~i~~L~eE~~~~~~q~~~L~ 198 (238)
-++.+|.+|.-|.+.+.+||++|+
T Consensus 47 ~LQrQv~qLt~~lQ~~~~Ene~Lk 70 (95)
T 3n7n_E 47 FLQRQIAQLNKQLQLSFQENEKLL 70 (95)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666677664
No 220
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=21.12 E-value=2.3e+02 Score=20.21 Aligned_cols=17 Identities=18% Similarity=0.423 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHhcC
Q 026478 221 VLLIGLLGILVGYLVKT 237 (238)
Q Consensus 221 v~~v~ll~~llG~~~~~ 237 (238)
.++++++++++|-.++-
T Consensus 90 l~~~~i~~~i~~~~~~~ 106 (109)
T 3hd7_B 90 IICCVILGIIIASTIGG 106 (109)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 34556677778877664
No 221
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=21.10 E-value=1.5e+02 Score=24.12 Aligned_cols=30 Identities=13% Similarity=0.172 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 174 SEAWSMISKLTEEKTSAMQQNQKLRQELEF 203 (238)
Q Consensus 174 ~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~ 203 (238)
+++.+++..|++|...+.++.++|+.+++.
T Consensus 135 ~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~ 164 (213)
T 1ik9_A 135 AENQAKNEHLQKENERLLRDWNDVQGRFEK 164 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555655555555555555555543
No 222
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=21.09 E-value=99 Score=18.62 Aligned_cols=19 Identities=26% Similarity=0.309 Sum_probs=11.2
Q ss_pred CCCccHHHHHHHHHHHHHH
Q 026478 213 AGGFSTVFVLLIGLLGILV 231 (238)
Q Consensus 213 ~~g~~~~~v~~v~ll~~ll 231 (238)
..++|++.+++.++.|+++
T Consensus 5 ~~~vp~wiIi~s~l~GLll 23 (42)
T 2k1a_A 5 ERAIPIWWVLVGVLGGLLL 23 (42)
T ss_dssp CCCCCHHHHHHHHHHHHHH
T ss_pred cCCcchHHHHHHHHHHHHH
Confidence 3468887765555555443
No 223
>1yyc_A LEA protein, putative late embryogenesis abundant protein; structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana}
Probab=20.96 E-value=3e+02 Score=21.50 Aligned_cols=50 Identities=10% Similarity=0.237 Sum_probs=38.0
Q ss_pred ceeEEEEEEcCCCC-----eEEEEEeecCCCc-EEEeCCceeeCCCCEEEEEEEec
Q 026478 23 QSSCSMQLTNKTDK-----FVAFKVKTTNPKK-YCVRPNTGIILPRTSCAVTVTMQ 72 (238)
Q Consensus 23 ~~~~~l~L~N~s~~-----~vaFKVKTT~p~~-Y~VrP~~G~I~P~~s~~V~V~lq 72 (238)
.....|+|+|+.+. -++|.++...-.. --+.|..|.|.++++..|.|-..
T Consensus 63 ~~~l~LrV~NPN~~pLpi~gi~Y~L~vnG~~lasG~s~~~~tIpa~g~~~v~Vpv~ 118 (174)
T 1yyc_A 63 DYHAKVSVKNPYSQSIPICQISYILKSATRTIASGTIPDPGSLVGSGTTVLDVPVK 118 (174)
T ss_dssp EEEEEEEEEECSSSCCBCCSEEEEEEESSSCEEEEEESCCCBCCSSEEEEEEEEEE
T ss_pred EEEEEEEEECCCCCCccccceEEEEEECCEEEEEEecCCCceECCCCcEEEEEEEE
Confidence 35689999999874 5789998754432 35678899999999888777654
No 224
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=20.85 E-value=99 Score=26.74 Aligned_cols=33 Identities=15% Similarity=0.255 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 175 EAWSMISKLTEEKTSAMQQNQKLRQELEFVRKE 207 (238)
Q Consensus 175 e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~~ 207 (238)
++..+++.+.|.+..++++.++|+++...|.++
T Consensus 7 ~l~~~~~~~~e~r~~lr~~~eql~~~i~~L~~~ 39 (302)
T 3ibp_A 7 SLSDSVSNAREERMALRQEQEQLQSRIQSLMQR 39 (302)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555666666666666665555443
No 225
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=20.83 E-value=87 Score=23.06 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=19.6
Q ss_pred eeEEEEEEcCCCCeEEEEEeecCC
Q 026478 24 SSCSMQLTNKTDKFVAFKVKTTNP 47 (238)
Q Consensus 24 ~~~~l~L~N~s~~~vaFKVKTT~p 47 (238)
..-+|++.......|-||||.+.|
T Consensus 39 ~~I~LKV~~qdg~ev~fkIk~tt~ 62 (115)
T 3kyd_D 39 EYIKLKVIGQDSSEIHFKVKMTTH 62 (115)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSC
T ss_pred CeEEEEEEcCCCCEEEEEEccCCh
Confidence 456788888888889999998877
No 226
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=20.79 E-value=88 Score=21.68 Aligned_cols=20 Identities=10% Similarity=0.325 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 026478 186 EKTSAMQQNQKLRQELEFVR 205 (238)
Q Consensus 186 E~~~~~~q~~~L~~e~~~l~ 205 (238)
....+..+.++|++++..||
T Consensus 53 rn~eL~~e~~~l~~~~eelq 72 (81)
T 1wt6_A 53 RNRDLEAHVRQLQERMELLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33456666777777777664
No 227
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=20.61 E-value=1.4e+02 Score=26.00 Aligned_cols=37 Identities=5% Similarity=-0.112 Sum_probs=20.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 171 EKSSEAWSMISKLTEEKTSAMQQNQKLRQELEFVRKE 207 (238)
Q Consensus 171 ~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~~ 207 (238)
+++.++...|....+++..|..+.+.++.++..|..+
T Consensus 12 ~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~ 48 (323)
T 1lwu_C 12 EEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQ 48 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555556666666666666666543
No 228
>2lll_A Lamin-B2; immunoglobulin-like fold, structural protein, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=20.55 E-value=1.7e+02 Score=22.22 Aligned_cols=43 Identities=19% Similarity=0.077 Sum_probs=29.4
Q ss_pred EEEEEEcCCCCeEE---EEEeecCCC---cEEEeCCceeeCCCCEEEEE
Q 026478 26 CSMQLTNKTDKFVA---FKVKTTNPK---KYCVRPNTGIILPRTSCAVT 68 (238)
Q Consensus 26 ~~l~L~N~s~~~va---FKVKTT~p~---~Y~VrP~~G~I~P~~s~~V~ 68 (238)
..++|.|.+++.+. |+|+-...+ .-+.-|+.=+|.||.++.|-
T Consensus 34 efV~L~N~s~~~~~L~GW~L~r~v~g~~~~~y~Fp~~~~L~pg~~VtIw 82 (139)
T 2lll_A 34 KFVQLKNNSDKDQSLGNWRIKRQVLEGEEIAYKFTPKYILRAGQMVTVW 82 (139)
T ss_dssp SEEEEEECSSSCEECSSCEEEEEETTSCEEEEECCTTCEECTTCEEEEE
T ss_pred CEEEEEECCCCccccCCCEEEEecCCCccEEEEECCCcEECCCCEEEEE
Confidence 47899999887664 777755332 23335666789999986543
No 229
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=20.55 E-value=2e+02 Score=19.31 Aligned_cols=14 Identities=21% Similarity=-0.054 Sum_probs=6.0
Q ss_pred cchHHHHHHHHHHH
Q 026478 171 EKSSEAWSMISKLT 184 (238)
Q Consensus 171 ~k~~e~~~~i~~L~ 184 (238)
.++.++..++.+++
T Consensus 20 ~klk~~~ee~~~~~ 33 (71)
T 1s1c_X 20 EKMKKAEEEYKLEK 33 (71)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 230
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.54 E-value=1.5e+02 Score=26.77 Aligned_cols=39 Identities=15% Similarity=0.049 Sum_probs=21.9
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026478 168 VPKEKSSEAWSMISKLTEEKTSAMQQNQKLRQELEFVRK 206 (238)
Q Consensus 168 ~~~~k~~e~~~~i~~L~eE~~~~~~q~~~L~~e~~~l~~ 206 (238)
++..++.++..++.-|.-|...+..|.+.+++|+..++.
T Consensus 46 dl~~~lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~e 84 (428)
T 4b4t_K 46 DIYFKLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQE 84 (428)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666665555555555566666655554443
Done!