Query 026479
Match_columns 238
No_of_seqs 229 out of 1564
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 08:32:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026479.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026479hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1318 Helix loop helix trans 99.6 1.4E-14 3E-19 135.3 10.7 71 52-122 221-295 (411)
2 cd00083 HLH Helix-loop-helix d 99.5 7.9E-14 1.7E-18 96.7 6.5 53 64-116 4-59 (60)
3 PF00010 HLH: Helix-loop-helix 99.5 5.8E-14 1.2E-18 96.6 5.6 49 65-113 2-55 (55)
4 smart00353 HLH helix loop heli 99.4 3.4E-13 7.4E-18 91.6 6.3 49 69-117 1-52 (53)
5 cd04897 ACT_ACR_3 ACT domain-c 99.4 1.9E-12 4.2E-17 95.0 10.0 69 149-217 3-74 (75)
6 cd04896 ACT_ACR-like_3 ACT dom 99.4 6.7E-12 1.4E-16 92.2 9.7 69 149-218 2-75 (75)
7 cd04895 ACT_ACR_1 ACT domain-c 99.3 1.8E-11 3.9E-16 89.2 9.2 64 149-212 3-69 (72)
8 cd04927 ACT_ACR-like_2 Second 99.2 3.9E-10 8.5E-15 82.6 10.1 70 148-217 1-73 (76)
9 cd04900 ACT_UUR-like_1 ACT dom 99.0 2.4E-09 5.2E-14 77.4 10.0 67 149-215 3-73 (73)
10 cd04925 ACT_ACR_2 ACT domain-c 99.0 7.4E-09 1.6E-13 75.3 10.3 68 149-216 2-73 (74)
11 KOG4304 Transcriptional repres 98.9 1.1E-09 2.4E-14 97.4 5.6 57 63-119 31-95 (250)
12 KOG1319 bHLHZip transcription 98.9 8.1E-09 1.7E-13 87.3 8.6 59 65-123 63-128 (229)
13 KOG3561 Aryl-hydrocarbon recep 98.7 2.8E-08 6.1E-13 100.0 5.6 56 60-115 16-75 (803)
14 PRK05007 PII uridylyl-transfer 98.6 1.5E-07 3.3E-12 96.8 9.7 71 147-217 808-880 (884)
15 cd04928 ACT_TyrKc Uncharacteri 98.6 5.7E-07 1.2E-11 64.8 9.2 64 149-215 3-67 (68)
16 cd04899 ACT_ACR-UUR-like_2 C-t 98.6 7.7E-07 1.7E-11 62.8 9.7 67 149-215 2-70 (70)
17 PRK01759 glnD PII uridylyl-tra 98.5 2.9E-07 6.2E-12 94.5 8.7 69 147-215 783-853 (854)
18 cd04926 ACT_ACR_4 C-terminal 98.4 2.9E-06 6.4E-11 61.1 9.6 50 149-198 3-52 (72)
19 PRK00275 glnD PII uridylyl-tra 98.4 1.6E-06 3.4E-11 89.5 10.6 73 147-219 814-889 (895)
20 PRK03059 PII uridylyl-transfer 98.4 1.7E-06 3.8E-11 88.8 9.8 70 147-216 786-855 (856)
21 PRK04374 PII uridylyl-transfer 98.4 2.1E-06 4.6E-11 88.2 10.3 70 147-216 796-867 (869)
22 COG2844 GlnD UTP:GlnB (protein 98.3 2.9E-06 6.3E-11 85.4 8.6 69 147-215 791-861 (867)
23 PRK05092 PII uridylyl-transfer 98.3 4.9E-06 1.1E-10 86.2 10.5 77 147-223 843-922 (931)
24 cd04873 ACT_UUR-ACR-like ACT d 98.2 2.1E-05 4.4E-10 54.9 9.8 66 149-214 2-69 (70)
25 PRK03381 PII uridylyl-transfer 98.1 1.2E-05 2.5E-10 82.0 9.2 66 147-212 707-773 (774)
26 KOG0561 bHLH transcription fac 98.1 6.4E-06 1.4E-10 74.4 5.6 56 64-119 60-117 (373)
27 TIGR01693 UTase_glnD [Protein- 98.0 1.7E-05 3.7E-10 81.4 9.2 68 148-215 780-849 (850)
28 KOG2483 Upstream transcription 98.0 1.6E-05 3.4E-10 70.1 7.5 56 65-120 60-118 (232)
29 KOG2588 Predicted DNA-binding 98.0 2.7E-06 5.9E-11 86.4 3.0 59 64-122 276-335 (953)
30 PF13740 ACT_6: ACT domain; PD 98.0 8.3E-05 1.8E-09 54.1 9.9 68 147-218 2-69 (76)
31 TIGR01693 UTase_glnD [Protein- 98.0 3.7E-05 7.9E-10 79.0 10.8 73 147-219 668-744 (850)
32 PRK05007 PII uridylyl-transfer 97.9 7.2E-05 1.6E-09 77.3 10.8 73 147-219 701-776 (884)
33 PRK01759 glnD PII uridylyl-tra 97.9 7.2E-05 1.6E-09 77.0 10.4 73 147-219 677-752 (854)
34 KOG4029 Transcription factor H 97.9 1.3E-05 2.8E-10 70.2 4.1 61 62-122 107-171 (228)
35 PRK03381 PII uridylyl-transfer 97.8 0.00014 3.1E-09 74.1 10.0 71 147-218 599-669 (774)
36 PF01842 ACT: ACT domain; Int 97.7 0.00022 4.8E-09 49.0 7.7 63 149-214 2-64 (66)
37 PRK03059 PII uridylyl-transfer 97.7 0.00019 4.1E-09 74.0 10.4 73 147-219 678-753 (856)
38 PRK00275 glnD PII uridylyl-tra 97.7 0.00027 5.8E-09 73.3 10.6 73 147-219 704-781 (895)
39 cd04893 ACT_GcvR_1 ACT domains 97.7 0.00054 1.2E-08 49.9 9.4 66 148-217 2-67 (77)
40 PLN03217 transcription factor 97.6 0.00014 3.1E-09 54.3 5.4 47 77-123 20-72 (93)
41 PRK04374 PII uridylyl-transfer 97.6 0.00044 9.5E-09 71.5 10.7 73 147-219 690-763 (869)
42 PRK05092 PII uridylyl-transfer 97.5 0.00057 1.2E-08 71.1 10.4 72 147-218 732-807 (931)
43 KOG3960 Myogenic helix-loop-he 97.5 0.00032 6.9E-09 62.1 7.0 56 68-123 122-179 (284)
44 PRK00194 hypothetical protein; 97.3 0.0015 3.2E-08 48.5 8.0 72 147-220 3-74 (90)
45 PF13291 ACT_4: ACT domain; PD 97.3 0.0019 4.1E-08 46.8 8.4 65 145-212 4-70 (80)
46 cd04870 ACT_PSP_1 CT domains f 97.3 0.0023 5.1E-08 46.1 8.3 65 150-217 2-66 (75)
47 cd04872 ACT_1ZPV ACT domain pr 97.3 0.0018 4E-08 48.0 7.9 70 148-219 2-71 (88)
48 cd04894 ACT_ACR-like_1 ACT dom 97.2 0.0018 4E-08 45.9 7.0 66 149-214 2-67 (69)
49 cd04869 ACT_GcvR_2 ACT domains 97.2 0.0048 1E-07 44.5 9.2 65 150-217 2-72 (81)
50 cd04875 ACT_F4HF-DF N-terminal 97.1 0.0055 1.2E-07 43.8 8.5 65 150-216 2-68 (74)
51 cd04887 ACT_MalLac-Enz ACT_Mal 96.8 0.015 3.2E-07 41.1 8.9 61 150-213 2-63 (74)
52 cd04886 ACT_ThrD-II-like C-ter 96.7 0.026 5.6E-07 38.7 9.0 59 151-212 2-65 (73)
53 COG2844 GlnD UTP:GlnB (protein 96.6 0.0098 2.1E-07 60.6 8.6 74 148-221 685-761 (867)
54 cd04888 ACT_PheB-BS C-terminal 96.4 0.029 6.3E-07 39.6 8.2 63 149-213 2-65 (76)
55 cd04881 ACT_HSDH-Hom ACT_HSDH_ 96.0 0.053 1.1E-06 37.7 7.9 47 148-194 1-49 (79)
56 PRK11589 gcvR glycine cleavage 96.0 0.022 4.8E-07 48.8 6.8 68 146-217 7-74 (190)
57 cd04880 ACT_AAAH-PDT-like ACT 96.0 0.099 2.1E-06 37.2 9.1 61 152-212 4-65 (75)
58 cd04876 ACT_RelA-SpoT ACT dom 95.8 0.094 2E-06 34.5 8.1 60 150-212 1-61 (71)
59 cd04877 ACT_TyrR N-terminal AC 95.8 0.07 1.5E-06 38.1 7.6 35 149-183 2-36 (74)
60 KOG3910 Helix loop helix trans 95.7 0.013 2.8E-07 56.5 4.5 61 58-118 520-584 (632)
61 PRK06027 purU formyltetrahydro 95.5 0.11 2.3E-06 47.3 9.7 71 147-219 6-78 (286)
62 PRK13010 purU formyltetrahydro 95.5 0.09 2E-06 47.9 8.9 72 147-219 9-82 (289)
63 cd04905 ACT_CM-PDT C-terminal 95.4 0.26 5.6E-06 35.6 9.7 49 150-198 4-53 (80)
64 cd02116 ACT ACT domains are co 95.3 0.13 2.8E-06 32.0 7.0 35 150-184 1-35 (60)
65 cd04874 ACT_Af1403 N-terminal 95.1 0.17 3.6E-06 34.6 7.5 46 149-194 2-48 (72)
66 PRK04435 hypothetical protein; 95.1 0.22 4.8E-06 40.8 9.4 66 145-212 67-133 (147)
67 KOG4447 Transcription factor T 95.1 0.013 2.8E-07 48.5 2.0 55 63-117 77-133 (173)
68 cd04903 ACT_LSD C-terminal ACT 95.0 0.23 5E-06 33.7 7.9 45 150-194 2-48 (71)
69 PRK08577 hypothetical protein; 94.8 0.3 6.5E-06 39.2 9.3 68 143-212 52-121 (136)
70 TIGR00655 PurU formyltetrahydr 94.8 0.18 3.8E-06 45.8 8.8 67 149-217 2-71 (280)
71 cd04878 ACT_AHAS N-terminal AC 94.8 0.34 7.5E-06 32.8 8.4 59 150-212 3-63 (72)
72 cd04879 ACT_3PGDH-like ACT_3PG 94.6 0.33 7.1E-06 32.8 7.9 44 150-193 2-47 (71)
73 cd04908 ACT_Bt0572_1 N-termina 94.6 0.27 5.8E-06 34.2 7.5 45 149-195 3-47 (66)
74 cd04931 ACT_PAH ACT domain of 94.5 0.51 1.1E-05 35.6 9.3 50 149-198 16-66 (90)
75 cd04909 ACT_PDH-BS C-terminal 94.5 0.21 4.5E-06 34.7 6.8 46 149-194 3-50 (69)
76 cd04889 ACT_PDH-BS-like C-term 94.5 0.19 4.1E-06 33.6 6.3 45 151-195 2-47 (56)
77 KOG3560 Aryl-hydrocarbon recep 94.1 0.037 8.1E-07 54.1 2.8 38 73-110 34-75 (712)
78 PRK13011 formyltetrahydrofolat 94.0 0.4 8.8E-06 43.6 9.3 68 147-217 7-76 (286)
79 cd04882 ACT_Bt0572_2 C-termina 94.0 0.46 1E-05 32.1 7.5 44 150-193 2-47 (65)
80 cd04883 ACT_AcuB C-terminal AC 93.8 0.53 1.1E-05 32.7 7.8 47 149-195 3-51 (72)
81 PRK07334 threonine dehydratase 93.8 0.51 1.1E-05 44.6 9.9 65 146-213 325-394 (403)
82 PRK11589 gcvR glycine cleavage 93.7 1.5 3.2E-05 37.7 11.7 101 107-215 59-166 (190)
83 cd04884 ACT_CBS C-terminal ACT 93.6 0.58 1.2E-05 32.9 7.7 60 150-212 2-64 (72)
84 COG0788 PurU Formyltetrahydrof 93.5 0.37 7.9E-06 43.6 7.8 72 147-220 7-80 (287)
85 PRK00227 glnD PII uridylyl-tra 93.4 0.13 2.8E-06 52.3 5.3 59 149-216 633-691 (693)
86 TIGR00119 acolac_sm acetolacta 93.2 0.55 1.2E-05 39.1 8.0 63 149-215 3-67 (157)
87 KOG3898 Transcription factor N 93.1 0.054 1.2E-06 48.5 2.0 51 65-115 73-126 (254)
88 COG3830 ACT domain-containing 93.0 0.27 5.8E-06 37.4 5.2 71 147-219 3-73 (90)
89 cd04901 ACT_3PGDH C-terminal A 93.0 0.21 4.5E-06 34.4 4.4 45 151-195 3-47 (69)
90 KOG4395 Transcription factor A 92.6 0.22 4.7E-06 44.5 5.1 52 66-117 176-230 (285)
91 PRK11895 ilvH acetolactate syn 92.4 1.1 2.4E-05 37.4 8.8 63 149-215 4-68 (161)
92 PRK06737 acetolactate synthase 92.1 0.85 1.8E-05 33.5 6.8 63 149-215 4-68 (76)
93 CHL00100 ilvH acetohydroxyacid 92.0 1.3 2.9E-05 37.5 9.0 64 149-216 4-69 (174)
94 cd04904 ACT_AAAH ACT domain of 92.0 1.5 3.2E-05 31.4 8.0 46 152-197 5-51 (74)
95 cd04902 ACT_3PGDH-xct C-termin 91.9 1 2.3E-05 31.1 7.0 45 151-195 3-49 (73)
96 cd04929 ACT_TPH ACT domain of 91.8 1.2 2.6E-05 32.3 7.4 45 153-197 6-51 (74)
97 PRK00227 glnD PII uridylyl-tra 91.5 0.93 2E-05 46.1 8.8 66 149-216 548-614 (693)
98 PF13710 ACT_5: ACT domain; PD 91.5 1 2.2E-05 31.6 6.5 56 156-215 1-58 (63)
99 PRK13562 acetolactate synthase 91.2 1.3 2.7E-05 33.3 7.0 66 149-215 4-69 (84)
100 KOG3558 Hypoxia-inducible fact 90.7 0.21 4.6E-06 50.2 3.2 41 70-110 52-96 (768)
101 KOG3559 Transcriptional regula 90.7 0.22 4.7E-06 47.5 3.1 42 70-111 7-52 (598)
102 COG4492 PheB ACT domain-contai 90.5 2 4.2E-05 35.1 8.0 67 145-213 70-137 (150)
103 PRK10872 relA (p)ppGpp synthet 90.2 1.9 4E-05 44.3 9.5 64 146-212 665-730 (743)
104 PRK11152 ilvM acetolactate syn 90.1 2 4.3E-05 31.5 7.2 63 148-215 4-68 (76)
105 PRK11092 bifunctional (p)ppGpp 88.4 2.9 6.3E-05 42.7 9.4 64 146-212 625-689 (702)
106 TIGR00691 spoT_relA (p)ppGpp s 87.2 3.8 8.1E-05 41.7 9.3 64 146-212 609-673 (683)
107 cd04885 ACT_ThrD-I Tandem C-te 86.7 5.8 0.00013 27.6 7.6 59 151-213 2-61 (68)
108 PRK08178 acetolactate synthase 85.9 4.7 0.0001 31.0 7.2 65 148-215 9-73 (96)
109 PRK11899 prephenate dehydratas 85.9 5.9 0.00013 35.9 9.0 61 152-215 199-260 (279)
110 COG2716 GcvR Glycine cleavage 84.8 1.1 2.5E-05 37.9 3.6 62 147-212 5-66 (176)
111 cd04930 ACT_TH ACT domain of t 84.3 5.6 0.00012 31.3 7.2 46 152-197 46-92 (115)
112 KOG3582 Mlx interactors and re 83.7 0.33 7.1E-06 49.0 -0.1 63 64-126 651-718 (856)
113 PRK06382 threonine dehydratase 81.4 11 0.00024 35.6 9.3 51 146-196 329-384 (406)
114 cd04922 ACT_AKi-HSDH-ThrA_2 AC 80.1 9.2 0.0002 25.6 6.3 45 149-195 3-50 (66)
115 PRK08198 threonine dehydratase 77.6 22 0.00049 33.4 10.0 64 146-212 326-394 (404)
116 PF05088 Bac_GDH: Bacterial NA 77.4 19 0.0004 40.2 10.4 76 146-221 488-571 (1528)
117 TIGR01127 ilvA_1Cterm threonin 77.4 16 0.00035 34.0 8.9 64 146-212 304-372 (380)
118 cd04937 ACT_AKi-DapG-BS_2 ACT 77.2 15 0.00032 25.1 6.6 28 149-176 3-33 (64)
119 cd04892 ACT_AK-like_2 ACT doma 77.2 13 0.00028 24.1 6.2 44 150-195 3-49 (65)
120 COG4747 ACT domain-containing 75.0 8.2 0.00018 31.1 5.3 45 149-193 5-49 (142)
121 PRK10622 pheA bifunctional cho 74.4 22 0.00047 33.8 9.0 61 153-216 303-364 (386)
122 PLN02317 arogenate dehydratase 74.1 21 0.00045 34.0 8.7 45 154-198 290-349 (382)
123 COG3978 Acetolactate synthase 73.7 19 0.00041 26.9 6.5 63 148-215 4-68 (86)
124 COG0077 PheA Prephenate dehydr 73.2 23 0.00049 32.3 8.4 61 152-215 199-260 (279)
125 cd04919 ACT_AK-Hom3_2 ACT doma 73.2 21 0.00045 24.0 6.5 38 156-195 13-50 (66)
126 PRK11898 prephenate dehydratas 72.7 21 0.00046 32.3 8.1 47 152-198 201-249 (283)
127 cd04898 ACT_ACR-like_4 ACT dom 72.6 9.1 0.0002 28.2 4.6 44 150-193 3-48 (77)
128 COG0317 SpoT Guanosine polypho 70.2 26 0.00056 36.0 8.8 43 145-187 625-667 (701)
129 cd04906 ACT_ThrD-I_1 First of 69.9 39 0.00086 24.5 8.6 60 149-212 3-63 (85)
130 COG2716 GcvR Glycine cleavage 69.1 20 0.00044 30.4 6.6 69 146-214 91-162 (176)
131 cd04916 ACT_AKiii-YclM-BS_2 AC 67.8 31 0.00068 22.9 6.5 45 149-195 3-50 (66)
132 cd04932 ACT_AKiii-LysC-EC_1 AC 67.6 43 0.00092 24.0 8.2 57 154-217 11-67 (75)
133 PRK14637 hypothetical protein; 62.4 54 0.0012 27.0 7.9 62 156-217 6-67 (151)
134 PRK08526 threonine dehydratase 62.2 62 0.0013 30.7 9.4 64 146-212 325-393 (403)
135 cd04924 ACT_AK-Arch_2 ACT doma 60.5 46 0.001 22.0 6.2 45 149-195 3-50 (66)
136 PRK14639 hypothetical protein; 56.8 60 0.0013 26.4 7.2 55 164-218 3-57 (140)
137 COG1707 ACT domain-containing 56.5 45 0.00098 28.5 6.5 48 150-197 5-52 (218)
138 PRK00907 hypothetical protein; 56.5 61 0.0013 24.6 6.7 63 148-213 18-84 (92)
139 PF13840 ACT_7: ACT domain ; P 54.7 36 0.00077 23.6 4.9 32 148-179 7-42 (65)
140 PF09383 NIL: NIL domain; Int 53.8 75 0.0016 22.3 9.6 52 146-197 3-54 (76)
141 KOG4447 Transcription factor T 53.4 9.9 0.00022 31.7 2.1 45 71-115 29-75 (173)
142 TIGR01268 Phe4hydrox_tetr phen 53.4 66 0.0014 31.2 7.9 46 152-197 21-67 (436)
143 cd04890 ACT_AK-like_1 ACT doma 53.4 51 0.0011 21.9 5.4 38 155-196 11-48 (62)
144 cd04935 ACT_AKiii-DAPDC_1 ACT 52.4 83 0.0018 22.4 7.0 56 154-213 11-67 (75)
145 PRK14647 hypothetical protein; 52.4 87 0.0019 25.9 7.6 56 163-218 13-68 (159)
146 PRK10820 DNA-binding transcrip 52.2 25 0.00054 34.5 5.0 35 149-183 2-36 (520)
147 cd04918 ACT_AK1-AT_2 ACT domai 52.1 46 0.001 22.7 5.1 28 156-183 12-39 (65)
148 cd04923 ACT_AK-LysC-DapG-like_ 51.8 62 0.0013 21.0 5.6 24 156-179 12-35 (63)
149 PRK00092 ribosome maturation p 51.6 82 0.0018 25.7 7.3 56 163-218 12-67 (154)
150 cd04871 ACT_PSP_2 ACT domains 51.2 21 0.00045 26.2 3.3 62 150-215 2-73 (84)
151 PF05088 Bac_GDH: Bacterial NA 51.0 98 0.0021 34.8 9.6 72 147-218 17-107 (1528)
152 cd04921 ACT_AKi-HSDH-ThrA-like 50.8 82 0.0018 21.9 6.6 63 149-215 3-68 (80)
153 cd04933 ACT_AK1-AT_1 ACT domai 50.5 95 0.0021 22.5 7.0 38 155-196 12-49 (78)
154 TIGR01270 Trp_5_monoox tryptop 50.5 65 0.0014 31.5 7.4 48 150-197 34-83 (464)
155 PRK06349 homoserine dehydrogen 48.5 91 0.002 29.8 8.1 36 147-182 348-383 (426)
156 PRK06545 prephenate dehydrogen 47.9 2E+02 0.0044 26.5 10.2 96 97-196 235-339 (359)
157 PRK14640 hypothetical protein; 47.4 1.2E+02 0.0025 24.9 7.6 55 163-217 11-65 (152)
158 COG4747 ACT domain-containing 47.1 1.5E+02 0.0032 24.0 7.7 43 150-193 72-116 (142)
159 cd04913 ACT_AKii-LysC-BS-like_ 46.9 84 0.0018 20.9 6.2 26 154-179 9-34 (75)
160 PRK14634 hypothetical protein; 46.6 1.1E+02 0.0023 25.3 7.2 55 163-217 12-68 (155)
161 PRK14630 hypothetical protein; 46.3 1.1E+02 0.0024 24.9 7.2 57 162-218 12-68 (143)
162 cd04936 ACT_AKii-LysC-BS-like_ 45.7 81 0.0018 20.4 5.8 25 155-179 11-35 (63)
163 PRK14646 hypothetical protein; 44.7 1.5E+02 0.0032 24.5 7.8 57 161-217 10-68 (155)
164 PRK08818 prephenate dehydrogen 43.5 1.2E+02 0.0025 28.7 7.9 44 153-197 301-345 (370)
165 cd04915 ACT_AK-Ectoine_2 ACT d 43.0 64 0.0014 22.2 4.7 26 157-182 14-39 (66)
166 cd04920 ACT_AKiii-DAPDC_2 ACT 42.9 1.1E+02 0.0023 20.9 5.8 21 156-176 12-32 (63)
167 PRK14638 hypothetical protein; 41.6 1.4E+02 0.0031 24.4 7.2 55 163-217 13-68 (150)
168 TIGR00719 sda_beta L-serine de 41.5 1.4E+02 0.0031 25.6 7.5 44 150-193 151-196 (208)
169 cd04934 ACT_AK-Hom3_1 CT domai 41.2 1.3E+02 0.0028 21.3 6.6 53 156-213 13-65 (73)
170 PRK14632 hypothetical protein; 40.4 1.4E+02 0.003 25.1 7.1 54 164-218 14-67 (172)
171 cd04868 ACT_AK-like ACT domain 40.3 90 0.002 19.4 5.8 38 156-195 12-49 (60)
172 KOG3582 Mlx interactors and re 39.3 9.2 0.0002 39.0 -0.2 54 66-122 789-847 (856)
173 PRK14633 hypothetical protein; 39.3 1.7E+02 0.0038 23.9 7.4 55 163-218 9-63 (150)
174 PRK14645 hypothetical protein; 37.8 2E+02 0.0043 23.7 7.6 59 160-218 11-71 (154)
175 COG0779 Uncharacterized protei 37.8 1.4E+02 0.0031 24.7 6.7 53 164-216 14-66 (153)
176 PRK11790 D-3-phosphoglycerate 37.8 86 0.0019 29.8 6.1 46 148-193 339-384 (409)
177 PF02576 DUF150: Uncharacteris 37.6 1.3E+02 0.0027 24.1 6.3 53 165-217 3-55 (141)
178 TIGR02079 THD1 threonine dehyd 37.6 3.1E+02 0.0068 25.9 9.9 64 146-212 324-389 (409)
179 PF14689 SPOB_a: Sensor_kinase 37.3 1.1E+02 0.0023 21.1 5.0 47 67-120 11-57 (62)
180 PF02344 Myc-LZ: Myc leucine z 35.5 44 0.00096 20.5 2.4 19 70-88 11-29 (32)
181 cd04912 ACT_AKiii-LysC-EC-like 34.5 1.6E+02 0.0035 20.6 7.8 31 149-179 3-36 (75)
182 cd04891 ACT_AK-LysC-DapG-like_ 34.0 1.2E+02 0.0027 19.0 5.6 40 155-194 9-49 (61)
183 COG0440 IlvH Acetolactate synt 33.8 1.7E+02 0.0036 24.7 6.4 64 150-217 7-72 (163)
184 cd04917 ACT_AKiii-LysC-EC_2 AC 31.3 1.6E+02 0.0035 19.6 6.1 26 149-174 3-31 (64)
185 PRK00341 hypothetical protein; 31.1 2.2E+02 0.0047 21.4 6.2 62 148-213 18-83 (91)
186 PRK14641 hypothetical protein; 29.4 2.6E+02 0.0056 23.6 7.0 49 169-217 20-68 (173)
187 COG3283 TyrR Transcriptional r 29.0 76 0.0017 30.6 4.0 36 149-184 2-37 (511)
188 COG2061 ACT-domain-containing 29.0 3.5E+02 0.0076 22.8 7.8 50 147-196 5-57 (170)
189 PRK14631 hypothetical protein; 28.4 3.3E+02 0.0072 22.9 7.5 55 163-217 13-85 (174)
190 PRK08639 threonine dehydratase 28.1 4.1E+02 0.0089 25.2 9.0 65 146-213 335-401 (420)
191 PRK14644 hypothetical protein; 27.6 2.4E+02 0.0051 22.8 6.3 49 166-217 6-54 (136)
192 PRK03094 hypothetical protein; 26.9 85 0.0018 23.3 3.2 20 160-179 9-28 (80)
193 PRK14643 hypothetical protein; 26.4 3.5E+02 0.0077 22.5 7.3 55 163-217 14-72 (164)
194 PRK12483 threonine dehydratase 22.8 4.9E+02 0.011 25.8 8.6 62 146-212 344-407 (521)
195 PF08544 GHMP_kinases_C: GHMP 21.7 2.8E+02 0.0061 19.1 7.0 46 161-215 36-83 (85)
196 PRK14636 hypothetical protein; 21.6 4.9E+02 0.011 21.9 7.8 55 163-217 10-66 (176)
197 cd04911 ACT_AKiii-YclM-BS_1 AC 21.5 2.8E+02 0.006 20.2 5.0 25 155-179 12-36 (76)
198 PRK13581 D-3-phosphoglycerate 21.2 2.6E+02 0.0057 27.4 6.4 41 153-193 458-500 (526)
199 PRK15385 magnesium transport p 20.5 6E+02 0.013 22.4 9.7 39 146-184 141-181 (225)
200 TIGR01124 ilvA_2Cterm threonin 20.0 8E+02 0.017 24.0 9.4 62 146-212 324-386 (499)
No 1
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=99.56 E-value=1.4e-14 Score=135.29 Aligned_cols=71 Identities=30% Similarity=0.451 Sum_probs=62.7
Q ss_pred CCCCChhhhhhHHhhhccHHHHHHHHHHHHHHHHHHhccCCCC----CCChhhHHHHHHHHHHHHHHHHHHHhcc
Q 026479 52 LTETTPEDRALAALKNHKEAEKRRRERINSHLNKLRSILSCNS----KLDKASLLARVVQRVRELKEQTIELTEV 122 (238)
Q Consensus 52 ~~~~~~~~~~~~~~~~h~~~ER~RR~~in~~~~~Lr~lvP~~~----k~dK~siL~~ai~yik~Lq~~~~~l~~~ 122 (238)
..+.+...|...++.+||++|||||++||++|.+|..|||+++ +++|++||..+++||++||+..++..+.
T Consensus 221 ~~~~~~~~rdr~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~~~E~ 295 (411)
T KOG1318|consen 221 KTDATALERDRRKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQRAREL 295 (411)
T ss_pred CcccchhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 3444567788888999999999999999999999999999874 8899999999999999999998866544
No 2
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.48 E-value=7.9e-14 Score=96.72 Aligned_cols=53 Identities=40% Similarity=0.598 Sum_probs=49.7
Q ss_pred HhhhccHHHHHHHHHHHHHHHHHHhccCCC---CCCChhhHHHHHHHHHHHHHHHH
Q 026479 64 ALKNHKEAEKRRRERINSHLNKLRSILSCN---SKLDKASLLARVVQRVRELKEQT 116 (238)
Q Consensus 64 ~~~~h~~~ER~RR~~in~~~~~Lr~lvP~~---~k~dK~siL~~ai~yik~Lq~~~ 116 (238)
.+..|+..||+||++||+.|..|+++||.. .|+||++||..||+||+.|+.++
T Consensus 4 ~r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~ 59 (60)
T cd00083 4 RREAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELL 59 (60)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 357899999999999999999999999987 79999999999999999999876
No 3
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.48 E-value=5.8e-14 Score=96.56 Aligned_cols=49 Identities=39% Similarity=0.710 Sum_probs=46.1
Q ss_pred hhhccHHHHHHHHHHHHHHHHHHhccCCC-----CCCChhhHHHHHHHHHHHHH
Q 026479 65 LKNHKEAEKRRRERINSHLNKLRSILSCN-----SKLDKASLLARVVQRVRELK 113 (238)
Q Consensus 65 ~~~h~~~ER~RR~~in~~~~~Lr~lvP~~-----~k~dK~siL~~ai~yik~Lq 113 (238)
+..|+..||+||++||+.|.+|+++||.. .|++|++||..||+||++||
T Consensus 2 R~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 2 RQKHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence 46899999999999999999999999976 58999999999999999997
No 4
>smart00353 HLH helix loop helix domain.
Probab=99.43 E-value=3.4e-13 Score=91.61 Aligned_cols=49 Identities=37% Similarity=0.626 Sum_probs=45.6
Q ss_pred cHHHHHHHHHHHHHHHHHHhccCC---CCCCChhhHHHHHHHHHHHHHHHHH
Q 026479 69 KEAEKRRRERINSHLNKLRSILSC---NSKLDKASLLARVVQRVRELKEQTI 117 (238)
Q Consensus 69 ~~~ER~RR~~in~~~~~Lr~lvP~---~~k~dK~siL~~ai~yik~Lq~~~~ 117 (238)
+..||+||++||++|..|+++||. ..|++|++||.+||+||+.|+.+++
T Consensus 1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 1 NARERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 468999999999999999999994 6699999999999999999999875
No 5
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.41 E-value=1.9e-12 Score=94.98 Aligned_cols=69 Identities=19% Similarity=0.300 Sum_probs=62.8
Q ss_pred EEEEEeCCCCCcHHHHHHHHHhcCCceEEEEEeecCCEEEEEEEEeecCCC---ChhhHHHHHHHHHHHHhh
Q 026479 149 KASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVTLGGRIRNVLIIAAEKDH---SIESVHFLQNALKSLLER 217 (238)
Q Consensus 149 ~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~g~rv~~~f~V~~~~~~---~~~~~~~L~~aL~~vl~~ 217 (238)
.|+|.|.||||||.+|..+|.++|++|.+|.|+|.|+++.++|+|....+. +++..+.|+++|.++|++
T Consensus 3 vveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl~~~~~~~~l~~~L~~al~~ 74 (75)
T cd04897 3 VVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLSTEGERQRVIKCLEAAIER 74 (75)
T ss_pred EEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCccCCHHHHHHHHHHHHHHHhc
Confidence 588999999999999999999999999999999999999999999888663 456778999999999865
No 6
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.36 E-value=6.7e-12 Score=92.15 Aligned_cols=69 Identities=17% Similarity=0.211 Sum_probs=61.3
Q ss_pred EEEEEeCCCCCcHHHHHHHHHhcCCceEEEEEe--ecCCEEEEEEEEeecCC---CChhhHHHHHHHHHHHHhhc
Q 026479 149 KASLCCEDRSDLLPDIIEILKSLHLKTLKSEMV--TLGGRIRNVLIIAAEKD---HSIESVHFLQNALKSLLERS 218 (238)
Q Consensus 149 ~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Is--t~g~rv~~~f~V~~~~~---~~~~~~~~L~~aL~~vl~~~ 218 (238)
.++|.|.||||||++|+++|..+|++|..|+|+ |.|+++.++|+| ..++ .+++....|+++|+++++.+
T Consensus 2 vlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~~~g~kl~d~~~~~~L~~~L~~~l~~~ 75 (75)
T cd04896 2 LLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-QSDGKKIMDPKKQAALCARLREEMVCP 75 (75)
T ss_pred EEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-eCCCCccCCHHHHHHHHHHHHHHhcCC
Confidence 478999999999999999999999999999999 999999999999 4444 24567789999999998754
No 7
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.30 E-value=1.8e-11 Score=89.20 Aligned_cols=64 Identities=14% Similarity=0.288 Sum_probs=56.4
Q ss_pred EEEEEeCCCCCcHHHHHHHHHhcCCceEEEEEeecCCEEEEEEEEeecCCC---ChhhHHHHHHHHH
Q 026479 149 KASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVTLGGRIRNVLIIAAEKDH---SIESVHFLQNALK 212 (238)
Q Consensus 149 ~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~g~rv~~~f~V~~~~~~---~~~~~~~L~~aL~ 212 (238)
.|+|.+.||||||.+|+++|.++||+|..|.|+|.|+++.++|+|....+. +++.+..|+++|.
T Consensus 3 viev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl~d~~~~~~l~~~L~ 69 (72)
T cd04895 3 LVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLTDDSLIAYIEKSLG 69 (72)
T ss_pred EEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCCCCHHHHHHHHHHhc
Confidence 589999999999999999999999999999999999999999999877653 3556677777764
No 8
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.16 E-value=3.9e-10 Score=82.60 Aligned_cols=70 Identities=26% Similarity=0.437 Sum_probs=60.0
Q ss_pred EEEEEEeCCCCCcHHHHHHHHHhcCCceEEEEEee-cCCEEEEEEEEeecCCC--ChhhHHHHHHHHHHHHhh
Q 026479 148 FKASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVT-LGGRIRNVLIIAAEKDH--SIESVHFLQNALKSLLER 217 (238)
Q Consensus 148 v~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist-~g~rv~~~f~V~~~~~~--~~~~~~~L~~aL~~vl~~ 217 (238)
+.++|.|.||||||++++.+|..+||+|.+|+|.| .++++.++|+|....+. .++..+.|+++|.++|..
T Consensus 1 ~~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~~~~~~~~~~l~~~L~~~L~~ 73 (76)
T cd04927 1 FLLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDARELLHTKKRREETYDYLRAVLGD 73 (76)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHch
Confidence 36899999999999999999999999999999986 99999999999766543 345667788888888754
No 9
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.04 E-value=2.4e-09 Score=77.38 Aligned_cols=67 Identities=21% Similarity=0.325 Sum_probs=55.8
Q ss_pred EEEEEeCCCCCcHHHHHHHHHhcCCceEEEEEeec-CCEEEEEEEEeecCCC---ChhhHHHHHHHHHHHH
Q 026479 149 KASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVTL-GGRIRNVLIIAAEKDH---SIESVHFLQNALKSLL 215 (238)
Q Consensus 149 ~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~-g~rv~~~f~V~~~~~~---~~~~~~~L~~aL~~vl 215 (238)
.|.|.|.+|||+|++++.+|..+||+|+.|+|.|. +|++.++|+|....+. .++..+.|+++|.++|
T Consensus 3 ~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~~L~~~l 73 (73)
T cd04900 3 EVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLARIREALEDAL 73 (73)
T ss_pred EEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCCCCChHHHHHHHHHHHHhhC
Confidence 57889999999999999999999999999999877 6999999999865443 2445667777776653
No 10
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.98 E-value=7.4e-09 Score=75.27 Aligned_cols=68 Identities=22% Similarity=0.392 Sum_probs=59.3
Q ss_pred EEEEEeCCCCCcHHHHHHHHHhcCCceEEEEEeecCCEEEEEEEEeecC-C---CChhhHHHHHHHHHHHHh
Q 026479 149 KASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVTLGGRIRNVLIIAAEK-D---HSIESVHFLQNALKSLLE 216 (238)
Q Consensus 149 ~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~g~rv~~~f~V~~~~-~---~~~~~~~~L~~aL~~vl~ 216 (238)
.|+|.+.||||+|.+|+.+|.++|++|++|+|.|.++++.++|+|.... + ..++....|+++|.++|.
T Consensus 2 ~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~l~ 73 (74)
T cd04925 2 AIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGAPIDDPIRLASIEDRLDNVLR 73 (74)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHHhc
Confidence 4789999999999999999999999999999999999999999998654 3 234567888999888774
No 11
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]
Probab=98.94 E-value=1.1e-09 Score=97.35 Aligned_cols=57 Identities=32% Similarity=0.452 Sum_probs=49.9
Q ss_pred HHhhhccHHHHHHHHHHHHHHHHHHhccCC--------CCCCChhhHHHHHHHHHHHHHHHHHHH
Q 026479 63 AALKNHKEAEKRRRERINSHLNKLRSILSC--------NSKLDKASLLARVVQRVRELKEQTIEL 119 (238)
Q Consensus 63 ~~~~~h~~~ER~RR~~in~~~~~Lr~lvP~--------~~k~dK~siL~~ai~yik~Lq~~~~~l 119 (238)
.++.+|.+.|||||+|||.+|.+|+.|||. .+|++||.||+.||+|++.|+.....-
T Consensus 31 ~rk~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~~~ 95 (250)
T KOG4304|consen 31 YRKVRKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQAA 95 (250)
T ss_pred HhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcccccc
Confidence 345789999999999999999999999992 368999999999999999998865543
No 12
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=98.88 E-value=8.1e-09 Score=87.26 Aligned_cols=59 Identities=24% Similarity=0.419 Sum_probs=52.8
Q ss_pred hhhccHHHHHHHHHHHHHHHHHHhccCCC-------CCCChhhHHHHHHHHHHHHHHHHHHHhccc
Q 026479 65 LKNHKEAEKRRRERINSHLNKLRSILSCN-------SKLDKASLLARVVQRVRELKEQTIELTEVE 123 (238)
Q Consensus 65 ~~~h~~~ER~RR~~in~~~~~Lr~lvP~~-------~k~dK~siL~~ai~yik~Lq~~~~~l~~~~ 123 (238)
+..|--+||+||+-||..+..|+.|||.+ .|+.||-||.++|+||.+|++++...+++.
T Consensus 63 r~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e~ 128 (229)
T KOG1319|consen 63 RRAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEEV 128 (229)
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999999999999954 288999999999999999999888777654
No 13
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]
Probab=98.65 E-value=2.8e-08 Score=100.00 Aligned_cols=56 Identities=34% Similarity=0.509 Sum_probs=49.9
Q ss_pred hhhHHhhhccHHHHHHHHHHHHHHHHHHhccCCC----CCCChhhHHHHHHHHHHHHHHH
Q 026479 60 RALAALKNHKEAEKRRRERINSHLNKLRSILSCN----SKLDKASLLARVVQRVRELKEQ 115 (238)
Q Consensus 60 ~~~~~~~~h~~~ER~RR~~in~~~~~Lr~lvP~~----~k~dK~siL~~ai~yik~Lq~~ 115 (238)
|....+.+|+.+|||||+++|..|.+|.+|||.+ .|+||-+||.+||++||.+++.
T Consensus 16 k~r~~Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 16 KDRKKRENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ 75 (803)
T ss_pred hhhhccccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence 3344468999999999999999999999999965 4999999999999999988875
No 14
>PRK05007 PII uridylyl-transferase; Provisional
Probab=98.61 E-value=1.5e-07 Score=96.79 Aligned_cols=71 Identities=21% Similarity=0.296 Sum_probs=63.0
Q ss_pred EEEEEEEeCCCCCcHHHHHHHHHhcCCceEEEEEeecCCEEEEEEEEeecCCC--ChhhHHHHHHHHHHHHhh
Q 026479 147 IFKASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVTLGGRIRNVLIIAAEKDH--SIESVHFLQNALKSLLER 217 (238)
Q Consensus 147 ~v~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~g~rv~~~f~V~~~~~~--~~~~~~~L~~aL~~vl~~ 217 (238)
-..|+|.|.||||||++|+++|.++||+|.+|+|+|.|+++.|+|+|....+. ..+....|+++|..+|..
T Consensus 808 ~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T~gera~DvFyV~~~~g~~l~~~~~~~l~~~L~~~l~~ 880 (884)
T PRK05007 808 RSYMELIALDQPGLLARVGKIFADLGISLHGARITTIGERVEDLFILATADRRALNEELQQELRQRLTEALNP 880 (884)
T ss_pred eEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEeccCceEEEEEEEEcCCCCcCCHHHHHHHHHHHHHHHhh
Confidence 35799999999999999999999999999999999999999999999877553 245678999999998854
No 15
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.58 E-value=5.7e-07 Score=64.85 Aligned_cols=64 Identities=19% Similarity=0.300 Sum_probs=51.6
Q ss_pred EEEEEeCCCCCcHHHHHHHHHhcCCceEEEEEe-ecCCEEEEEEEEeecCCCChhhHHHHHHHHHHHH
Q 026479 149 KASLCCEDRSDLLPDIIEILKSLHLKTLKSEMV-TLGGRIRNVLIIAAEKDHSIESVHFLQNALKSLL 215 (238)
Q Consensus 149 ~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Is-t~g~rv~~~f~V~~~~~~~~~~~~~L~~aL~~vl 215 (238)
.|.|.|.++||+|.+++.+|..+||+|+.|+|- +.+|.++++|+|...+++.+ ..|.++|.++|
T Consensus 3 eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~~~~~---~~~~~~~~~~~ 67 (68)
T cd04928 3 EITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWKRGET---AALGHALQKEI 67 (68)
T ss_pred EEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCCccch---HHHHHHHHHhh
Confidence 467889999999999999999999999999975 66899999999987764322 35555555443
No 16
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.57 E-value=7.7e-07 Score=62.77 Aligned_cols=67 Identities=28% Similarity=0.405 Sum_probs=55.9
Q ss_pred EEEEEeCCCCCcHHHHHHHHHhcCCceEEEEEeecCCEEEEEEEEeecCCC--ChhhHHHHHHHHHHHH
Q 026479 149 KASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVTLGGRIRNVLIIAAEKDH--SIESVHFLQNALKSLL 215 (238)
Q Consensus 149 ~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~g~rv~~~f~V~~~~~~--~~~~~~~L~~aL~~vl 215 (238)
.+.|.+.+++|+|.+|+.+|.++++.|.++++.+.++.+.++|++....+. ..+..+.|+++|..+|
T Consensus 2 ~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~~i~~~l~~~~ 70 (70)
T cd04899 2 VLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQPLDPERQEALRAALGEAL 70 (70)
T ss_pred EEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECCCCCcCCHHHHHHHHHHHHhhC
Confidence 477899999999999999999999999999999999999999999876543 2345566777776553
No 17
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=98.52 E-value=2.9e-07 Score=94.47 Aligned_cols=69 Identities=23% Similarity=0.401 Sum_probs=60.1
Q ss_pred EEEEEEEeCCCCCcHHHHHHHHHhcCCceEEEEEeecCCEEEEEEEEeecCCCC--hhhHHHHHHHHHHHH
Q 026479 147 IFKASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVTLGGRIRNVLIIAAEKDHS--IESVHFLQNALKSLL 215 (238)
Q Consensus 147 ~v~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~g~rv~~~f~V~~~~~~~--~~~~~~L~~aL~~vl 215 (238)
-..|+|.+.||||||.+|+++|.++|++|..|+|+|.|+++.|+|+|+...+.. .+....|+++|.++|
T Consensus 783 ~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T~gerv~D~Fyv~~~~g~~l~~~~~~~l~~~L~~~l 853 (854)
T PRK01759 783 QTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITTIGEKAEDFFILTNQQGQALDEEERKALKSRLLSNL 853 (854)
T ss_pred eEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEcccCceEEEEEEEECCCCCcCChHHHHHHHHHHHHHh
Confidence 457999999999999999999999999999999999999999999998766532 233488888888776
No 18
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.42 E-value=2.9e-06 Score=61.13 Aligned_cols=50 Identities=26% Similarity=0.416 Sum_probs=45.8
Q ss_pred EEEEEeCCCCCcHHHHHHHHHhcCCceEEEEEeecCCEEEEEEEEeecCC
Q 026479 149 KASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVTLGGRIRNVLIIAAEKD 198 (238)
Q Consensus 149 ~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~g~rv~~~f~V~~~~~ 198 (238)
.+.|.+++++|+|.+|+.+|.++|++|++|.+.|.++.+.++|+|....+
T Consensus 3 ri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~~~ 52 (72)
T cd04926 3 RLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDANG 52 (72)
T ss_pred EEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECCCC
Confidence 57788999999999999999999999999999999899999999976543
No 19
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=98.40 E-value=1.6e-06 Score=89.53 Aligned_cols=73 Identities=25% Similarity=0.376 Sum_probs=63.7
Q ss_pred EEEEEEEeCCCCCcHHHHHHHHHhcCCceEEEEEeecCCEEEEEEEEeecCCC---ChhhHHHHHHHHHHHHhhcC
Q 026479 147 IFKASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVTLGGRIRNVLIIAAEKDH---SIESVHFLQNALKSLLERSN 219 (238)
Q Consensus 147 ~v~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~g~rv~~~f~V~~~~~~---~~~~~~~L~~aL~~vl~~~~ 219 (238)
...|+|.|.||||||++|..+|..+||+|++|+|+|.|+++.++|+|....+. .++....|+++|.++|....
T Consensus 814 ~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~AkI~T~g~~v~D~F~V~d~~g~~l~~~~~~~~l~~~L~~~L~~~~ 889 (895)
T PRK00275 814 VTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITDADNQPLSDPQLCSRLQDAICEQLDARN 889 (895)
T ss_pred eEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeEEEecCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhccc
Confidence 35789999999999999999999999999999999999999999999876553 34567789999999985544
No 20
>PRK03059 PII uridylyl-transferase; Provisional
Probab=98.36 E-value=1.7e-06 Score=88.80 Aligned_cols=70 Identities=21% Similarity=0.291 Sum_probs=61.1
Q ss_pred EEEEEEEeCCCCCcHHHHHHHHHhcCCceEEEEEeecCCEEEEEEEEeecCCCChhhHHHHHHHHHHHHh
Q 026479 147 IFKASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVTLGGRIRNVLIIAAEKDHSIESVHFLQNALKSLLE 216 (238)
Q Consensus 147 ~v~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~g~rv~~~f~V~~~~~~~~~~~~~L~~aL~~vl~ 216 (238)
...|+|.|.||||||++|+.+|..+|++|+.|+|+|.|+++.++|+|...+...++....|+++|.++|+
T Consensus 786 ~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T~~~~v~DvF~V~~~~~~~~~~~~~l~~~L~~~L~ 855 (856)
T PRK03059 786 YYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTLGERVEDTFLIDGSGLSDNRLQIQLETELLDALA 855 (856)
T ss_pred EEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEcCCCCCCHHHHHHHHHHHHHHhc
Confidence 3578999999999999999999999999999999999999999999954443345677899999988774
No 21
>PRK04374 PII uridylyl-transferase; Provisional
Probab=98.35 E-value=2.1e-06 Score=88.24 Aligned_cols=70 Identities=30% Similarity=0.457 Sum_probs=61.1
Q ss_pred EEEEEEEeCCCCCcHHHHHHHHHhcCCceEEEEEeecCCEEEEEEEEeecCCC--ChhhHHHHHHHHHHHHh
Q 026479 147 IFKASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVTLGGRIRNVLIIAAEKDH--SIESVHFLQNALKSLLE 216 (238)
Q Consensus 147 ~v~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~g~rv~~~f~V~~~~~~--~~~~~~~L~~aL~~vl~ 216 (238)
...|+|.+.||||||++|..+|..+|++|+.|+|+|.|+++.++|+|....+. ..+....|+++|.++|+
T Consensus 796 ~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~g~~a~D~F~V~d~~g~~~~~~~~~~l~~~L~~~l~ 867 (869)
T PRK04374 796 RTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATFGERAEDQFQITDEHDRPLSESARQALRDALCACLD 867 (869)
T ss_pred eEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCcCChHHHHHHHHHHHHHhc
Confidence 46799999999999999999999999999999999999999999999876543 23344899999998874
No 22
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=2.9e-06 Score=85.38 Aligned_cols=69 Identities=22% Similarity=0.309 Sum_probs=59.0
Q ss_pred EEEEEEEeCCCCCcHHHHHHHHHhcCCceEEEEEeecCCEEEEEEEEeecCCC--ChhhHHHHHHHHHHHH
Q 026479 147 IFKASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVTLGGRIRNVLIIAAEKDH--SIESVHFLQNALKSLL 215 (238)
Q Consensus 147 ~v~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~g~rv~~~f~V~~~~~~--~~~~~~~L~~aL~~vl 215 (238)
...+++.+.||||||..|..+|.+++|+|++|+|+|+|+++.++|+|....+. ..+..+.+.++|.+.+
T Consensus 791 ~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT~GErveD~F~vt~~~~~~l~~~~~q~l~~~ll~al 861 (867)
T COG2844 791 KTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTFGERVEDVFIVTDADGQALNAELRQSLLQRLLEAL 861 (867)
T ss_pred ceEEEEEeCCcccHHHHHHHHHHhcccceeeeeeccccccceeEEEEeccccccCCHHHHHHHHHHHHHHh
Confidence 35799999999999999999999999999999999999999999999988764 3445566666666655
No 23
>PRK05092 PII uridylyl-transferase; Provisional
Probab=98.26 E-value=4.9e-06 Score=86.22 Aligned_cols=77 Identities=21% Similarity=0.259 Sum_probs=65.9
Q ss_pred EEEEEEEeCCCCCcHHHHHHHHHhcCCceEEEEEeecCCEEEEEEEEeecCCC---ChhhHHHHHHHHHHHHhhcCCCch
Q 026479 147 IFKASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVTLGGRIRNVLIIAAEKDH---SIESVHFLQNALKSLLERSNSSDR 223 (238)
Q Consensus 147 ~v~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~g~rv~~~f~V~~~~~~---~~~~~~~L~~aL~~vl~~~~~~~~ 223 (238)
...|.|.|.||||+|.+|+.+|.++|++|.+|+|.|.++++.++|+|....+. .++....|+++|.++|......++
T Consensus 843 ~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~T~~~~~~D~F~v~d~~g~~i~~~~~~~~l~~~L~~~L~~~~~~~~ 922 (931)
T PRK05092 843 FTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVTDLFGLKITNEARQAAIRRALLAALAEGEAEAR 922 (931)
T ss_pred eEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEEEcCCEEEEEEEEeCCCCCcCCCHHHHHHHHHHHHHHhcCcccccc
Confidence 36799999999999999999999999999999999999999999999876543 345678899999999966554433
No 24
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=98.22 E-value=2.1e-05 Score=54.90 Aligned_cols=66 Identities=26% Similarity=0.388 Sum_probs=54.2
Q ss_pred EEEEEeCCCCCcHHHHHHHHHhcCCceEEEEEeecCCEEEEEEEEeecCCC--ChhhHHHHHHHHHHH
Q 026479 149 KASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVTLGGRIRNVLIIAAEKDH--SIESVHFLQNALKSL 214 (238)
Q Consensus 149 ~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~g~rv~~~f~V~~~~~~--~~~~~~~L~~aL~~v 214 (238)
.|.|.|.+++|+|.+|+.+|.++|+.|.++.+.+.+++....|++....+. .++..+.|+++|..+
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~ 69 (70)
T cd04873 2 VVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRPLDPERIARLEEALEDA 69 (70)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECCCCCcCCHHHHHHHHHHHHhh
Confidence 467899999999999999999999999999999988899999999776532 234556677777654
No 25
>PRK03381 PII uridylyl-transferase; Provisional
Probab=98.10 E-value=1.2e-05 Score=81.98 Aligned_cols=66 Identities=15% Similarity=0.245 Sum_probs=55.6
Q ss_pred EEEEEEEeCCCCCcHHHHHHHHHhcCCceEEEEEeecCCEEEEEEEEeecCCCCh-hhHHHHHHHHH
Q 026479 147 IFKASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVTLGGRIRNVLIIAAEKDHSI-ESVHFLQNALK 212 (238)
Q Consensus 147 ~v~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~g~rv~~~f~V~~~~~~~~-~~~~~L~~aL~ 212 (238)
...|+|.|.||||||.+|..+|..+|++|++|+|+|.|+++.++|+|....+... +....|+++|.
T Consensus 707 ~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~g~~a~D~F~V~d~~g~~~~~~~~~l~~~L~ 773 (774)
T PRK03381 707 ATVLEVRAADRPGLLARLARALERAGVDVRWARVATLGADVVDVFYVTGAAGGPLADARAAVEQAVL 773 (774)
T ss_pred eEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeecCCeEEEEEEEECCCCCcCchHHHHHHHHhh
Confidence 3578999999999999999999999999999999999999999999987765321 12566666654
No 26
>KOG0561 consensus bHLH transcription factor [Transcription]
Probab=98.06 E-value=6.4e-06 Score=74.40 Aligned_cols=56 Identities=29% Similarity=0.456 Sum_probs=48.3
Q ss_pred HhhhccHHHHHHHHHHHHHHHHHHhccCC--CCCCChhhHHHHHHHHHHHHHHHHHHH
Q 026479 64 ALKNHKEAEKRRRERINSHLNKLRSILSC--NSKLDKASLLARVVQRVRELKEQTIEL 119 (238)
Q Consensus 64 ~~~~h~~~ER~RR~~in~~~~~Lr~lvP~--~~k~dK~siL~~ai~yik~Lq~~~~~l 119 (238)
++.--|.-||||-.-||..|..||+|+|. .-|++||.||..+.+||..|..+.-+|
T Consensus 60 RReIANsNERRRMQSINAGFqsLr~LlPr~eGEKLSKAAILQQTa~yI~~Le~~Kt~l 117 (373)
T KOG0561|consen 60 RREIANSNERRRMQSINAGFQSLRALLPRKEGEKLSKAAILQQTADYIHQLEGHKTEL 117 (373)
T ss_pred HHHhhcchHHHHHHhhhHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHhccccc
Confidence 33445688999999999999999999995 459999999999999999998865554
No 27
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=98.04 E-value=1.7e-05 Score=81.41 Aligned_cols=68 Identities=19% Similarity=0.217 Sum_probs=59.7
Q ss_pred EEEEEEeCCCCCcHHHHHHHHHhcCCceEEEEEeecCCEEEEEEEEeecCCC--ChhhHHHHHHHHHHHH
Q 026479 148 FKASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVTLGGRIRNVLIIAAEKDH--SIESVHFLQNALKSLL 215 (238)
Q Consensus 148 v~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~g~rv~~~f~V~~~~~~--~~~~~~~L~~aL~~vl 215 (238)
..|+|.|.||||+|.+|+++|.++|++|.+|+|+|.|+++.++|+|....+. ..+....|+++|..+|
T Consensus 780 t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i~t~~~~~~d~F~v~~~~g~~~~~~~~~~l~~~L~~~l 849 (850)
T TIGR01693 780 TIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTDLFGLKLTDEEEQRLLEVLAASV 849 (850)
T ss_pred EEEEEEECCccHHHHHHHHHHHHCCCeEEEEEEEecCccceeEEEEECCCCCCCCHHHHHHHHHHHHHHh
Confidence 5689999999999999999999999999999999999999999999876553 2356678888888765
No 28
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=98.03 E-value=1.6e-05 Score=70.09 Aligned_cols=56 Identities=18% Similarity=0.354 Sum_probs=47.2
Q ss_pred hhhccHHHHHHHHHHHHHHHHHHhccCCCC--CCC-hhhHHHHHHHHHHHHHHHHHHHh
Q 026479 65 LKNHKEAEKRRRERINSHLNKLRSILSCNS--KLD-KASLLARVVQRVRELKEQTIELT 120 (238)
Q Consensus 65 ~~~h~~~ER~RR~~in~~~~~Lr~lvP~~~--k~d-K~siL~~ai~yik~Lq~~~~~l~ 120 (238)
+..||..||+||+.|.++|..|+.+||... +.. -++||.+|+.||+.|+.+.....
T Consensus 60 R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~~ 118 (232)
T KOG2483|consen 60 RAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQQ 118 (232)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHHH
Confidence 357999999999999999999999999653 222 58999999999999998665543
No 29
>KOG2588 consensus Predicted DNA-binding protein [Transcription]
Probab=98.03 E-value=2.7e-06 Score=86.37 Aligned_cols=59 Identities=24% Similarity=0.398 Sum_probs=53.4
Q ss_pred HhhhccHHHHHHHHHHHHHHHHHHhccCCC-CCCChhhHHHHHHHHHHHHHHHHHHHhcc
Q 026479 64 ALKNHKEAEKRRRERINSHLNKLRSILSCN-SKLDKASLLARVVQRVRELKEQTIELTEV 122 (238)
Q Consensus 64 ~~~~h~~~ER~RR~~in~~~~~Lr~lvP~~-~k~dK~siL~~ai~yik~Lq~~~~~l~~~ 122 (238)
++.+||.+|||-|-.|||+|.+|+.+||+. .|+.|..+|..||+||++|+...+.+..+
T Consensus 276 kRtAHN~IEKRYRsSINDKI~eLk~lV~g~~aKl~kSavLr~ai~~i~dl~~~nq~lk~~ 335 (953)
T KOG2588|consen 276 KRTAHNIIEKRYRSSINDKIIELKDLVPGTEAKLNKSAVLRKAIDYIEDLQGYNQKLKLE 335 (953)
T ss_pred ccchhhHHHHHhhcchhHHHHHHHHhcCccHhhhhhhhhHHHHHHHHHHhhccccccchh
Confidence 468999999999999999999999999976 59999999999999999999887777544
No 30
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=98.02 E-value=8.3e-05 Score=54.06 Aligned_cols=68 Identities=21% Similarity=0.334 Sum_probs=56.3
Q ss_pred EEEEEEEeCCCCCcHHHHHHHHHhcCCceEEEEEeecCCEEEEEEEEeecCCCChhhHHHHHHHHHHHHhhc
Q 026479 147 IFKASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVTLGGRIRNVLIIAAEKDHSIESVHFLQNALKSLLERS 218 (238)
Q Consensus 147 ~v~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~g~rv~~~f~V~~~~~~~~~~~~~L~~aL~~vl~~~ 218 (238)
.+.|.+.++||||++..|..+|.++|.+|.+++.++.++++.-++.|+.. ......|+.+|.++-.+.
T Consensus 2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~----~~~~~~l~~~L~~l~~~~ 69 (76)
T PF13740_consen 2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP----EDSLERLESALEELAEEL 69 (76)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES----HHHHHHHHHHHHHHHHHT
T ss_pred EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC----cccHHHHHHHHHHHHHHC
Confidence 47899999999999999999999999999999999999999988888777 346678888888765443
No 31
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=98.01 E-value=3.7e-05 Score=79.03 Aligned_cols=73 Identities=14% Similarity=0.135 Sum_probs=63.1
Q ss_pred EEEEEEEeCCCCCcHHHHHHHHHhcCCceEEEEEe-ecCCEEEEEEEEeecCCC---ChhhHHHHHHHHHHHHhhcC
Q 026479 147 IFKASLCCEDRSDLLPDIIEILKSLHLKTLKSEMV-TLGGRIRNVLIIAAEKDH---SIESVHFLQNALKSLLERSN 219 (238)
Q Consensus 147 ~v~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Is-t~g~rv~~~f~V~~~~~~---~~~~~~~L~~aL~~vl~~~~ 219 (238)
...|.|.+.|+||+|.+|+.+|..+||+|++|+|. |.+|+++++|+|....+. .++....|+++|.++|....
T Consensus 668 ~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~~g~~~~~~~~~~~i~~~L~~~L~~~~ 744 (850)
T TIGR01693 668 GTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGSPPAAERVFQELLQGLVDVLAGLA 744 (850)
T ss_pred eEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECCCCCCCCcHHHHHHHHHHHHHHHcCCC
Confidence 45688999999999999999999999999999997 889999999999877653 23457789999999996644
No 32
>PRK05007 PII uridylyl-transferase; Provisional
Probab=97.90 E-value=7.2e-05 Score=77.27 Aligned_cols=73 Identities=18% Similarity=0.231 Sum_probs=61.1
Q ss_pred EEEEEEEeCCCCCcHHHHHHHHHhcCCceEEEEEeecC-CEEEEEEEEeecCCC--ChhhHHHHHHHHHHHHhhcC
Q 026479 147 IFKASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVTLG-GRIRNVLIIAAEKDH--SIESVHFLQNALKSLLERSN 219 (238)
Q Consensus 147 ~v~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~g-~rv~~~f~V~~~~~~--~~~~~~~L~~aL~~vl~~~~ 219 (238)
...|.|+|.|+||+|..|+.+|..+||+|++|.|.|.+ |+++++|+|....+. ..+....|+++|.++|....
T Consensus 701 ~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~~g~~~~~~~~~~I~~~L~~aL~~~~ 776 (884)
T PRK05007 701 GTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEPDGSPLSQDRHQVIRKALEQALTQSS 776 (884)
T ss_pred eEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHcCCC
Confidence 35788999999999999999999999999999987665 599999999877643 23456779999999996653
No 33
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=97.89 E-value=7.2e-05 Score=77.02 Aligned_cols=73 Identities=15% Similarity=0.319 Sum_probs=61.7
Q ss_pred EEEEEEEeCCCCCcHHHHHHHHHhcCCceEEEEEee-cCCEEEEEEEEeecCCCC--hhhHHHHHHHHHHHHhhcC
Q 026479 147 IFKASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVT-LGGRIRNVLIIAAEKDHS--IESVHFLQNALKSLLERSN 219 (238)
Q Consensus 147 ~v~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist-~g~rv~~~f~V~~~~~~~--~~~~~~L~~aL~~vl~~~~ 219 (238)
...|.|.|.|+||||++|+.+|..+||+|++|.|.| .+|.++++|+|....+.. .+....|+++|.++|....
T Consensus 677 ~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~~g~~~~~~~~~~l~~~L~~aL~~~~ 752 (854)
T PRK01759 677 GTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTELNGKLLEFDRRRQLEQALTKALNTNK 752 (854)
T ss_pred eEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHcCCC
Confidence 357889999999999999999999999999999866 899999999998775532 3456688899999886543
No 34
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]
Probab=97.87 E-value=1.3e-05 Score=70.25 Aligned_cols=61 Identities=23% Similarity=0.279 Sum_probs=52.6
Q ss_pred hHHhhhccHHHHHHHHHHHHHHHHHHhccC---C-CCCCChhhHHHHHHHHHHHHHHHHHHHhcc
Q 026479 62 LAALKNHKEAEKRRRERINSHLNKLRSILS---C-NSKLDKASLLARVVQRVRELKEQTIELTEV 122 (238)
Q Consensus 62 ~~~~~~h~~~ER~RR~~in~~~~~Lr~lvP---~-~~k~dK~siL~~ai~yik~Lq~~~~~l~~~ 122 (238)
......+|..||+|=..+|..|..||.+|| . .+|+.|..+|.-||.||+.|+.-++.-...
T Consensus 107 ~~~~~~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~~~ 171 (228)
T KOG4029|consen 107 SAQRQARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQEAP 171 (228)
T ss_pred hhhhhhhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhcccccC
Confidence 344566778899999999999999999999 3 679999999999999999999988776543
No 35
>PRK03381 PII uridylyl-transferase; Provisional
Probab=97.76 E-value=0.00014 Score=74.14 Aligned_cols=71 Identities=14% Similarity=0.256 Sum_probs=60.9
Q ss_pred EEEEEEEeCCCCCcHHHHHHHHHhcCCceEEEEEeecCCEEEEEEEEeecCCCChhhHHHHHHHHHHHHhhc
Q 026479 147 IFKASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVTLGGRIRNVLIIAAEKDHSIESVHFLQNALKSLLERS 218 (238)
Q Consensus 147 ~v~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~g~rv~~~f~V~~~~~~~~~~~~~L~~aL~~vl~~~ 218 (238)
.+.|.|+|.||||++.+|+.+|..+|++|++|+|.|.+|.+.++|+|....+.. ...+.|+++|.+++...
T Consensus 599 ~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~~~~~~-~~~~~l~~~L~~~L~~~ 669 (774)
T PRK03381 599 MVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPRFGSP-PDAALLRQDLRRALDGD 669 (774)
T ss_pred eEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCc-chHHHHHHHHHHHHcCC
Confidence 367889999999999999999999999999999999999999999998765432 23477888988888663
No 36
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=97.73 E-value=0.00022 Score=48.99 Aligned_cols=63 Identities=21% Similarity=0.266 Sum_probs=44.6
Q ss_pred EEEEEeCCCCCcHHHHHHHHHhcCCceEEEEEeecCCEEEEEEEEeecCCCChhhHHHHHHHHHHH
Q 026479 149 KASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVTLGGRIRNVLIIAAEKDHSIESVHFLQNALKSL 214 (238)
Q Consensus 149 ~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~g~rv~~~f~V~~~~~~~~~~~~~L~~aL~~v 214 (238)
.|.+.|++|||+|.+++.+|.++|++|.++.+.+.++.....+.+.... ......+.++|.++
T Consensus 2 ~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~ 64 (66)
T PF01842_consen 2 RVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVD---EEDLEKLLEELEAL 64 (66)
T ss_dssp EEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEE---GHGHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECC---CCCHHHHHHHHHcc
Confidence 5778999999999999999999999999999988877322222222221 23445556666554
No 37
>PRK03059 PII uridylyl-transferase; Provisional
Probab=97.72 E-value=0.00019 Score=74.02 Aligned_cols=73 Identities=12% Similarity=0.218 Sum_probs=61.6
Q ss_pred EEEEEEEeCCCCCcHHHHHHHHHhcCCceEEEEE-eecCCEEEEEEEEeecCCC--ChhhHHHHHHHHHHHHhhcC
Q 026479 147 IFKASLCCEDRSDLLPDIIEILKSLHLKTLKSEM-VTLGGRIRNVLIIAAEKDH--SIESVHFLQNALKSLLERSN 219 (238)
Q Consensus 147 ~v~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~I-st~g~rv~~~f~V~~~~~~--~~~~~~~L~~aL~~vl~~~~ 219 (238)
...|.|+|.|+||+|..|+.+|..+||+|++|.| ++.+|.++++|+|....+. .....+.|+++|.++|....
T Consensus 678 ~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~~~~~~~~~~~~~i~~~l~~~l~~~~ 753 (856)
T PRK03059 678 GLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDPEEDVHYRDIINLVEHELAERLAEQA 753 (856)
T ss_pred eEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCCCCCCChHHHHHHHHHHHHHHHcCCC
Confidence 3568889999999999999999999999999998 6789999999999876543 23456789999999986644
No 38
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=97.67 E-value=0.00027 Score=73.25 Aligned_cols=73 Identities=10% Similarity=0.204 Sum_probs=61.7
Q ss_pred EEEEEEEeCCCCCcHHHHHHHHHhcCCceEEEEE-eecCCEEEEEEEEeecCCCC----hhhHHHHHHHHHHHHhhcC
Q 026479 147 IFKASLCCEDRSDLLPDIIEILKSLHLKTLKSEM-VTLGGRIRNVLIIAAEKDHS----IESVHFLQNALKSLLERSN 219 (238)
Q Consensus 147 ~v~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~I-st~g~rv~~~f~V~~~~~~~----~~~~~~L~~aL~~vl~~~~ 219 (238)
...|.|.|.|+||+|.+|+.+|..+||+|++|.| ++.+|.++++|+|....+.. ++..+.|+++|.++|....
T Consensus 704 ~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d~~g~~~~~~~~r~~~i~~~L~~~L~~~~ 781 (895)
T PRK00275 704 GTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDDDGEPIGDNPARIEQIREGLTEALRNPD 781 (895)
T ss_pred eEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeCCCCCCccchHHHHHHHHHHHHHHHcCCC
Confidence 3578889999999999999999999999999997 67789999999998766532 2456789999999986544
No 39
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=97.67 E-value=0.00054 Score=49.90 Aligned_cols=66 Identities=21% Similarity=0.309 Sum_probs=54.2
Q ss_pred EEEEEEeCCCCCcHHHHHHHHHhcCCceEEEEEeecCCEEEEEEEEeecCCCChhhHHHHHHHHHHHHhh
Q 026479 148 FKASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVTLGGRIRNVLIIAAEKDHSIESVHFLQNALKSLLER 217 (238)
Q Consensus 148 v~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~g~rv~~~f~V~~~~~~~~~~~~~L~~aL~~vl~~ 217 (238)
+.|.+.|+|+||+..+|..+|.+.|.+|.+++....++.+.-.+.+.... .....|+++|..+-.+
T Consensus 2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~~~----~~~~~l~~~l~~~~~~ 67 (77)
T cd04893 2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEGSW----DAIAKLEAALPGLARR 67 (77)
T ss_pred EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEecc----ccHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999887777776542 2456777777765443
No 40
>PLN03217 transcription factor ATBS1; Provisional
Probab=97.60 E-value=0.00014 Score=54.26 Aligned_cols=47 Identities=26% Similarity=0.365 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHhccCCC------CCCChhhHHHHHHHHHHHHHHHHHHHhccc
Q 026479 77 ERINSHLNKLRSILSCN------SKLDKASLLARVVQRVRELKEQTIELTEVE 123 (238)
Q Consensus 77 ~~in~~~~~Lr~lvP~~------~k~dK~siL~~ai~yik~Lq~~~~~l~~~~ 123 (238)
+.||+.+..|+.|+|.. .|..-+-+|.++..||+.|+.++..|.+..
T Consensus 20 dqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSerL 72 (93)
T PLN03217 20 DQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERL 72 (93)
T ss_pred HHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999943 355666789999999999999999998764
No 41
>PRK04374 PII uridylyl-transferase; Provisional
Probab=97.59 E-value=0.00044 Score=71.46 Aligned_cols=73 Identities=15% Similarity=0.184 Sum_probs=61.9
Q ss_pred EEEEEEEeCCCCCcHHHHHHHHHhcCCceEEEEEee-cCCEEEEEEEEeecCCCChhhHHHHHHHHHHHHhhcC
Q 026479 147 IFKASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVT-LGGRIRNVLIIAAEKDHSIESVHFLQNALKSLLERSN 219 (238)
Q Consensus 147 ~v~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist-~g~rv~~~f~V~~~~~~~~~~~~~L~~aL~~vl~~~~ 219 (238)
...|.|.|.++||+|.+|+.+|..+|++|++|.|.| .+|.++++|+|....+........|+++|.++|....
T Consensus 690 ~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~~~~~~~~~~~i~~~l~~~l~~~~ 763 (869)
T PRK04374 690 ALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQDTYADGDPQRLAAALRQVLAGDL 763 (869)
T ss_pred eEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCCCCCChHHHHHHHHHHHHHHcCCC
Confidence 357888999999999999999999999999999865 7899999999987765434556678999999986643
No 42
>PRK05092 PII uridylyl-transferase; Provisional
Probab=97.51 E-value=0.00057 Score=71.08 Aligned_cols=72 Identities=14% Similarity=0.197 Sum_probs=60.8
Q ss_pred EEEEEEEeCCCCCcHHHHHHHHHhcCCceEEEEEee-cCCEEEEEEEEeecCCC---ChhhHHHHHHHHHHHHhhc
Q 026479 147 IFKASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVT-LGGRIRNVLIIAAEKDH---SIESVHFLQNALKSLLERS 218 (238)
Q Consensus 147 ~v~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist-~g~rv~~~f~V~~~~~~---~~~~~~~L~~aL~~vl~~~ 218 (238)
...|.|.|.|++|+|..|+.+|..+|++|++|+|.| .+|+++++|+|....+. ..+....|+++|..++...
T Consensus 732 ~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~~g~~~~~~~~~~~l~~~L~~~l~~~ 807 (931)
T PRK05092 732 VTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDAFGRDEDEPRRLARLAKAIEDALSGE 807 (931)
T ss_pred eEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHcCC
Confidence 357888999999999999999999999999999866 78999999999766542 3456778999998888543
No 43
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=97.49 E-value=0.00032 Score=62.14 Aligned_cols=56 Identities=23% Similarity=0.364 Sum_probs=47.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHhcc-CC-CCCCChhhHHHHHHHHHHHHHHHHHHHhccc
Q 026479 68 HKEAEKRRRERINSHLNKLRSIL-SC-NSKLDKASLLARVVQRVRELKEQTIELTEVE 123 (238)
Q Consensus 68 h~~~ER~RR~~in~~~~~Lr~lv-P~-~~k~dK~siL~~ai~yik~Lq~~~~~l~~~~ 123 (238)
--+.||||=.|+|+.|.+|+.-. ++ ...+.|+.||..||+||..||.-++++....
T Consensus 122 ATMRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~~~~ 179 (284)
T KOG3960|consen 122 ATMRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQDQAE 179 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 34779999999999999997654 33 3479999999999999999999999987664
No 44
>PRK00194 hypothetical protein; Validated
Probab=97.32 E-value=0.0015 Score=48.53 Aligned_cols=72 Identities=13% Similarity=0.229 Sum_probs=54.9
Q ss_pred EEEEEEEeCCCCCcHHHHHHHHHhcCCceEEEEEeecCCEEEEEEEEeecCCCChhhHHHHHHHHHHHHhhcCC
Q 026479 147 IFKASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVTLGGRIRNVLIIAAEKDHSIESVHFLQNALKSLLERSNS 220 (238)
Q Consensus 147 ~v~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~g~rv~~~f~V~~~~~~~~~~~~~L~~aL~~vl~~~~~ 220 (238)
.+.+.+.|.|+||++.+|+.+|.+.|++|.+.+..+.++.+.-.+.+.... .......|++.|.++-.+.+.
T Consensus 3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~l~~~l~~l~~~~~~ 74 (90)
T PRK00194 3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDISE--SKKDFAELKEELEELGKELGV 74 (90)
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEecC--CCCCHHHHHHHHHHHHHHcCC
Confidence 367889999999999999999999999999999888888766666665442 122356777777765544443
No 45
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=97.32 E-value=0.0019 Score=46.80 Aligned_cols=65 Identities=20% Similarity=0.311 Sum_probs=49.1
Q ss_pred ceEEEEEEEeCCCCCcHHHHHHHHHhcCCceEEEEEeec--CCEEEEEEEEeecCCCChhhHHHHHHHHH
Q 026479 145 TLIFKASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVTL--GGRIRNVLIIAAEKDHSIESVHFLQNALK 212 (238)
Q Consensus 145 ~~~v~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~--g~rv~~~f~V~~~~~~~~~~~~~L~~aL~ 212 (238)
...+.++|.+.+|+|+|.+|+.++.+.|+.|.+.++.+. ++.+.-.|.+...+ .+.++.|-.+|+
T Consensus 4 ~f~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~d---~~~L~~ii~~L~ 70 (80)
T PF13291_consen 4 SFPVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVKD---LEHLNQIIRKLR 70 (80)
T ss_dssp -EEEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEESS---HHHHHHHHHHHC
T ss_pred EEEEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEECC---HHHHHHHHHHHH
Confidence 456789999999999999999999999999999999885 67888888887653 344455555543
No 46
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.27 E-value=0.0023 Score=46.08 Aligned_cols=65 Identities=15% Similarity=0.220 Sum_probs=53.5
Q ss_pred EEEEeCCCCCcHHHHHHHHHhcCCceEEEEEeecCCEEEEEEEEeecCCCChhhHHHHHHHHHHHHhh
Q 026479 150 ASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVTLGGRIRNVLIIAAEKDHSIESVHFLQNALKSLLER 217 (238)
Q Consensus 150 I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~g~rv~~~f~V~~~~~~~~~~~~~L~~aL~~vl~~ 217 (238)
|.+.+.||||+..++.++|.++|++|.+.+.++.++.+.-.+.+...++ .....|+.+|..+-++
T Consensus 2 vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p~~---~~~~~l~~~l~~l~~~ 66 (75)
T cd04870 2 ITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIPDS---ADSEALLKDLLFKAHE 66 (75)
T ss_pred EEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcCCC---CCHHHHHHHHHHHHHH
Confidence 6788999999999999999999999999999999998888888876543 2456777777665543
No 47
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.26 E-value=0.0018 Score=48.02 Aligned_cols=70 Identities=17% Similarity=0.227 Sum_probs=55.6
Q ss_pred EEEEEEeCCCCCcHHHHHHHHHhcCCceEEEEEeecCCEEEEEEEEeecCCCChhhHHHHHHHHHHHHhhcC
Q 026479 148 FKASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVTLGGRIRNVLIIAAEKDHSIESVHFLQNALKSLLERSN 219 (238)
Q Consensus 148 v~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~g~rv~~~f~V~~~~~~~~~~~~~L~~aL~~vl~~~~ 219 (238)
+.|.+.|+|+||++..|..+|.++|++|.+.+..+.++.+.-.+.+...+ .......|+.+|..+-.+.+
T Consensus 2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~~--~~~~~~~L~~~l~~l~~~~~ 71 (88)
T cd04872 2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDISE--SNLDFAELQEELEELGKELG 71 (88)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeCC--CCCCHHHHHHHHHHHHHHcC
Confidence 46889999999999999999999999999999888888877777776553 12345688888777655544
No 48
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.23 E-value=0.0018 Score=45.91 Aligned_cols=66 Identities=20% Similarity=0.216 Sum_probs=52.9
Q ss_pred EEEEEeCCCCCcHHHHHHHHHhcCCceEEEEEeecCCEEEEEEEEeecCCCChhhHHHHHHHHHHH
Q 026479 149 KASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVTLGGRIRNVLIIAAEKDHSIESVHFLQNALKSL 214 (238)
Q Consensus 149 ~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~g~rv~~~f~V~~~~~~~~~~~~~L~~aL~~v 214 (238)
.|.|.|+|+.||-.+|++++-++||.|....++|-|.-..-+|.|..........-+.|+++|.++
T Consensus 2 vitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~~~~~~~rW~lLK~RL~~~ 67 (69)
T cd04894 2 VITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPRPPSIKVRWDLLKNRLMSA 67 (69)
T ss_pred EEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecCCCCCcccHHHHHHHHHhc
Confidence 478899999999999999999999999999999988877777777654422233446778877653
No 49
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=97.17 E-value=0.0048 Score=44.48 Aligned_cols=65 Identities=12% Similarity=0.211 Sum_probs=50.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHhcCCceEEEEEeecC------CEEEEEEEEeecCCCChhhHHHHHHHHHHHHhh
Q 026479 150 ASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVTLG------GRIRNVLIIAAEKDHSIESVHFLQNALKSLLER 217 (238)
Q Consensus 150 I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~g------~rv~~~f~V~~~~~~~~~~~~~L~~aL~~vl~~ 217 (238)
|.+.|.++||++.+|.++|.++|++|.+.+..+.+ +.+.-.+.+...++ .....|+.+|..+-.+
T Consensus 2 l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~~---~~~~~l~~~l~~l~~~ 72 (81)
T cd04869 2 VEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPAG---TDLDALREELEELCDD 72 (81)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCCC---CCHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999998877 55555556655432 2456777777665433
No 50
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.07 E-value=0.0055 Score=43.81 Aligned_cols=65 Identities=18% Similarity=0.190 Sum_probs=45.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHhcCCceEEEEEee--cCCEEEEEEEEeecCCCChhhHHHHHHHHHHHHh
Q 026479 150 ASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVT--LGGRIRNVLIIAAEKDHSIESVHFLQNALKSLLE 216 (238)
Q Consensus 150 I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist--~g~rv~~~f~V~~~~~~~~~~~~~L~~aL~~vl~ 216 (238)
|++.|+|+||++.+|..+|.++|+.|.+.+..+ .++.+.-.+.+.... .......|+.+|..+-.
T Consensus 2 i~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~~~--~~~~~~~l~~~l~~l~~ 68 (74)
T cd04875 2 LTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELEG--FDLSREALEAAFAPVAA 68 (74)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEeCC--CCCCHHHHHHHHHHHHH
Confidence 678999999999999999999999999999875 333322222222221 11346788888776543
No 51
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.81 E-value=0.015 Score=41.06 Aligned_cols=61 Identities=13% Similarity=0.120 Sum_probs=46.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHhcCCceEEEEEeecC-CEEEEEEEEeecCCCChhhHHHHHHHHHH
Q 026479 150 ASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVTLG-GRIRNVLIIAAEKDHSIESVHFLQNALKS 213 (238)
Q Consensus 150 I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~g-~rv~~~f~V~~~~~~~~~~~~~L~~aL~~ 213 (238)
+++.+.++||+|.+|+.+|.+.|..|.+.+..... +.+...|.++... .+.+..+..+|++
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev~~---~~~l~~i~~~L~~ 63 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDAPS---EEHAETIVAAVRA 63 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEcCC---HHHHHHHHHHHhc
Confidence 57789999999999999999999999999987753 6666666665553 3445555565553
No 52
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.65 E-value=0.026 Score=38.75 Aligned_cols=59 Identities=14% Similarity=0.200 Sum_probs=41.3
Q ss_pred EEEeCCCCCcHHHHHHHHHhcCCceEEEEEeec-----CCEEEEEEEEeecCCCChhhHHHHHHHHH
Q 026479 151 SLCCEDRSDLLPDIIEILKSLHLKTLKSEMVTL-----GGRIRNVLIIAAEKDHSIESVHFLQNALK 212 (238)
Q Consensus 151 ~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~-----g~rv~~~f~V~~~~~~~~~~~~~L~~aL~ 212 (238)
.+.++++||.|.+|+.+|.+.|++|.+.+.... .+...-.|.+.... .+....+..+|.
T Consensus 2 ~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~~---~~~l~~l~~~l~ 65 (73)
T cd04886 2 RVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETRG---AEHIEEIIAALR 65 (73)
T ss_pred EEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeCC---HHHHHHHHHHHH
Confidence 567899999999999999999999998886653 35555555555432 234445555544
No 53
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.56 E-value=0.0098 Score=60.61 Aligned_cols=74 Identities=15% Similarity=0.186 Sum_probs=59.9
Q ss_pred EEEEEEeCCCCCcHHHHHHHHHhcCCceEEEEE-eecCCEEEEEEEEeecCCCC--hhhHHHHHHHHHHHHhhcCCC
Q 026479 148 FKASLCCEDRSDLLPDIIEILKSLHLKTLKSEM-VTLGGRIRNVLIIAAEKDHS--IESVHFLQNALKSLLERSNSS 221 (238)
Q Consensus 148 v~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~I-st~g~rv~~~f~V~~~~~~~--~~~~~~L~~aL~~vl~~~~~~ 221 (238)
..|.|.|+++|+++..++.++...|++|++|.| +|.+|+++++|+|....+.. +.....+..+|.+++......
T Consensus 685 teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~~g~~~~~dr~~~~~~~l~~~l~s~~~~ 761 (867)
T COG2844 685 TEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPDGFPVEEDRRAALRGELIEALLSGKAQ 761 (867)
T ss_pred eEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecCCCCccchhHHHHHHHHHHHHHhcCCCC
Confidence 457789999999999999999999999999995 77889999999998776532 344456677777777555444
No 54
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.41 E-value=0.029 Score=39.60 Aligned_cols=63 Identities=17% Similarity=0.209 Sum_probs=46.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHHhcCCceEEEEEeec-CCEEEEEEEEeecCCCChhhHHHHHHHHHH
Q 026479 149 KASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVTL-GGRIRNVLIIAAEKDHSIESVHFLQNALKS 213 (238)
Q Consensus 149 ~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~-g~rv~~~f~V~~~~~~~~~~~~~L~~aL~~ 213 (238)
.+.+.+.+++|+|.+|+.+|.+.|.+|...+.... ++.+.-.|.+...+. ...+..|-.+|++
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~~~--~~~l~~l~~~L~~ 65 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTSTM--NGDIDELLEELRE 65 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcCch--HHHHHHHHHHHhc
Confidence 57788999999999999999999999999887553 466666677755431 2255666666653
No 55
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.04 E-value=0.053 Score=37.75 Aligned_cols=47 Identities=15% Similarity=0.164 Sum_probs=37.2
Q ss_pred EEEEEEeCCCCCcHHHHHHHHHhcCCceEEEEEeecC--CEEEEEEEEe
Q 026479 148 FKASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVTLG--GRIRNVLIIA 194 (238)
Q Consensus 148 v~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~g--~rv~~~f~V~ 194 (238)
+++++.+.+++|+|.+++.+|.+.|..|...+..+.. +...-.+.+.
T Consensus 1 ~yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~ 49 (79)
T cd04881 1 YYLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTH 49 (79)
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEc
Confidence 3688899999999999999999999999999876653 4444444443
No 56
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=96.02 E-value=0.022 Score=48.83 Aligned_cols=68 Identities=12% Similarity=0.184 Sum_probs=55.6
Q ss_pred eEEEEEEEeCCCCCcHHHHHHHHHhcCCceEEEEEeecCCEEEEEEEEeecCCCChhhHHHHHHHHHHHHhh
Q 026479 146 LIFKASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVTLGGRIRNVLIIAAEKDHSIESVHFLQNALKSLLER 217 (238)
Q Consensus 146 ~~v~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~g~rv~~~f~V~~~~~~~~~~~~~L~~aL~~vl~~ 217 (238)
..+.|.+.+.||||+...|..+|.++|.+|.+++.+..|+.+.-++.|+... ..+..|+.+|..+-++
T Consensus 7 ~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs~~~----~~~~~le~~L~~l~~~ 74 (190)
T PRK11589 7 HYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLSGSW----NAITLIESTLPLKGAE 74 (190)
T ss_pred cEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEeCCh----hHHHHHHHHHHhhhhh
Confidence 3467899999999999999999999999999999999999988888884443 3566777776555433
No 57
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=95.96 E-value=0.099 Score=37.23 Aligned_cols=61 Identities=11% Similarity=0.074 Sum_probs=44.0
Q ss_pred EEeCCCCCcHHHHHHHHHhcCCceEEEEEeecCC-EEEEEEEEeecCCCChhhHHHHHHHHH
Q 026479 152 LCCEDRSDLLPDIIEILKSLHLKTLKSEMVTLGG-RIRNVLIIAAEKDHSIESVHFLQNALK 212 (238)
Q Consensus 152 i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~g~-rv~~~f~V~~~~~~~~~~~~~L~~aL~ 212 (238)
+..+++||.|.+++.+|.+.|+.+.+.......+ .....|++.............+-..|.
T Consensus 4 ~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~~~~~~~~~~~~l~~l~ 65 (75)
T cd04880 4 FSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFEGHIDDPDVKEALEELK 65 (75)
T ss_pred EEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEECCCCCHHHHHHHHHHH
Confidence 4457899999999999999999999997766554 677888887775322333334444443
No 58
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=95.82 E-value=0.094 Score=34.51 Aligned_cols=60 Identities=20% Similarity=0.260 Sum_probs=41.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHhcCCceEEEEEeecC-CEEEEEEEEeecCCCChhhHHHHHHHHH
Q 026479 150 ASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVTLG-GRIRNVLIIAAEKDHSIESVHFLQNALK 212 (238)
Q Consensus 150 I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~g-~rv~~~f~V~~~~~~~~~~~~~L~~aL~ 212 (238)
+++.+.+++|.+..|+.+|.+.++++.+..+...+ +...-.|.+.... ......+.++|.
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~ 61 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLEVRD---LEHLARIMRKLR 61 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEEECC---HHHHHHHHHHHh
Confidence 35779999999999999999999999999887665 4444445554432 233444444443
No 59
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=95.76 E-value=0.07 Score=38.09 Aligned_cols=35 Identities=17% Similarity=0.399 Sum_probs=32.2
Q ss_pred EEEEEeCCCCCcHHHHHHHHHhcCCceEEEEEeec
Q 026479 149 KASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVTL 183 (238)
Q Consensus 149 ~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~ 183 (238)
.++|.|.+|+|+|.+|+.++.+.|..|.+.++.+.
T Consensus 2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~ 36 (74)
T cd04877 2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK 36 (74)
T ss_pred EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC
Confidence 47789999999999999999999999999998775
No 60
>KOG3910 consensus Helix loop helix transcription factor [Transcription]
Probab=95.70 E-value=0.013 Score=56.53 Aligned_cols=61 Identities=21% Similarity=0.258 Sum_probs=49.0
Q ss_pred hhhhhHHhhhccHHHHHHHHHHHHHHHHHHhccCCCCC----CChhhHHHHHHHHHHHHHHHHHH
Q 026479 58 EDRALAALKNHKEAEKRRRERINSHLNKLRSILSCNSK----LDKASLLARVVQRVRELKEQTIE 118 (238)
Q Consensus 58 ~~~~~~~~~~h~~~ER~RR~~in~~~~~Lr~lvP~~~k----~dK~siL~~ai~yik~Lq~~~~~ 118 (238)
..|..-++...|+.||-|-..||+.|++|..+.----| --|.-||..||.-|-.|++||.+
T Consensus 520 aeREkERR~aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRE 584 (632)
T KOG3910|consen 520 AEREKERRMANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRE 584 (632)
T ss_pred hhHHHHHHhhhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHH
Confidence 34445556778899999988899999999988642222 35788999999999999999976
No 61
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=95.54 E-value=0.11 Score=47.26 Aligned_cols=71 Identities=15% Similarity=0.229 Sum_probs=53.4
Q ss_pred EEEEEEEeCCCCCcHHHHHHHHHhcCCceEEEEEee--cCCEEEEEEEEeecCCCChhhHHHHHHHHHHHHhhcC
Q 026479 147 IFKASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVT--LGGRIRNVLIIAAEKDHSIESVHFLQNALKSLLERSN 219 (238)
Q Consensus 147 ~v~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist--~g~rv~~~f~V~~~~~~~~~~~~~L~~aL~~vl~~~~ 219 (238)
.+.|.+.|.||||+...|..+|.++|++|.+.+.++ .++.+.-.+.+.... .......|+.+|.++-++..
T Consensus 6 ~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~~~--~~~~~~~L~~~L~~l~~~l~ 78 (286)
T PRK06027 6 RYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEGDG--LIFNLETLRADFAALAEEFE 78 (286)
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEeCC--CCCCHHHHHHHHHHHHHHhC
Confidence 467899999999999999999999999999999999 888644444444311 12346788888776554433
No 62
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=95.45 E-value=0.09 Score=47.89 Aligned_cols=72 Identities=13% Similarity=0.204 Sum_probs=50.8
Q ss_pred EEEEEEEeCCCCCcHHHHHHHHHhcCCceEEEEEe--ecCCEEEEEEEEeecCCCChhhHHHHHHHHHHHHhhcC
Q 026479 147 IFKASLCCEDRSDLLPDIIEILKSLHLKTLKSEMV--TLGGRIRNVLIIAAEKDHSIESVHFLQNALKSLLERSN 219 (238)
Q Consensus 147 ~v~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Is--t~g~rv~~~f~V~~~~~~~~~~~~~L~~aL~~vl~~~~ 219 (238)
.+.|.+.|+||+|+...|..+|.+.|++|++.+-. +..+.++-.+.+.... ........|+.+|.++-++-+
T Consensus 9 ~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~~~~-~~~~~~~~l~~~l~~l~~~l~ 82 (289)
T PRK13010 9 SYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFHAQS-AEAASVDTFRQEFQPVAEKFD 82 (289)
T ss_pred CEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEEcCC-CCCCCHHHHHHHHHHHHHHhC
Confidence 36789999999999999999999999999999975 4444433332232111 112356788888887665544
No 63
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=95.43 E-value=0.26 Score=35.62 Aligned_cols=49 Identities=16% Similarity=0.177 Sum_probs=39.4
Q ss_pred EEEEeCCCCCcHHHHHHHHHhcCCceEEEEEeecC-CEEEEEEEEeecCC
Q 026479 150 ASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVTLG-GRIRNVLIIAAEKD 198 (238)
Q Consensus 150 I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~g-~rv~~~f~V~~~~~ 198 (238)
+.+...+++|.|.+++..|.++|+.+++....... +.....|+|.....
T Consensus 4 l~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~~~ 53 (80)
T cd04905 4 IVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEGH 53 (80)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEECC
Confidence 44556789999999999999999999998866654 46678888877753
No 64
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=95.31 E-value=0.13 Score=31.97 Aligned_cols=35 Identities=23% Similarity=0.348 Sum_probs=30.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHhcCCceEEEEEeecC
Q 026479 150 ASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVTLG 184 (238)
Q Consensus 150 I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~g 184 (238)
|++.|.+.+|.+.+++.+|...|+.|.........
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~ 35 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSG 35 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcC
Confidence 45788999999999999999999999999976654
No 65
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.11 E-value=0.17 Score=34.63 Aligned_cols=46 Identities=15% Similarity=0.221 Sum_probs=35.5
Q ss_pred EEEEEeCCCCCcHHHHHHHHHhcCCceEEEEEeecC-CEEEEEEEEe
Q 026479 149 KASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVTLG-GRIRNVLIIA 194 (238)
Q Consensus 149 ~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~g-~rv~~~f~V~ 194 (238)
.+.+.+.+++|.|.+++..|.+.+..|.+.+..+.. +...-.|.+.
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~ 48 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIEREGKARIYMELE 48 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccCCCeEEEEEEEe
Confidence 366789999999999999999999999988876653 4433334443
No 66
>PRK04435 hypothetical protein; Provisional
Probab=95.10 E-value=0.22 Score=40.81 Aligned_cols=66 Identities=23% Similarity=0.260 Sum_probs=50.0
Q ss_pred ceEEEEEEEeCCCCCcHHHHHHHHHhcCCceEEEEEee-cCCEEEEEEEEeecCCCChhhHHHHHHHHH
Q 026479 145 TLIFKASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVT-LGGRIRNVLIIAAEKDHSIESVHFLQNALK 212 (238)
Q Consensus 145 ~~~v~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist-~g~rv~~~f~V~~~~~~~~~~~~~L~~aL~ 212 (238)
+..+.+.+.+.+++|+|.+|+++|.+.|.+|...+.+. .++.+.-.|.+.... ....+..|-.+|+
T Consensus 67 ~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs~--~~~~L~~Li~~L~ 133 (147)
T PRK04435 67 GKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTSS--MEGDIDELLEKLR 133 (147)
T ss_pred CcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeCC--hHHHHHHHHHHHH
Confidence 46788999999999999999999999999999988654 356666677776643 1224556666554
No 67
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=95.09 E-value=0.013 Score=48.48 Aligned_cols=55 Identities=20% Similarity=0.210 Sum_probs=47.9
Q ss_pred HHhhhccHHHHHHHHHHHHHHHHHHhccC--CCCCCChhhHHHHHHHHHHHHHHHHH
Q 026479 63 AALKNHKEAEKRRRERINSHLNKLRSILS--CNSKLDKASLLARVVQRVRELKEQTI 117 (238)
Q Consensus 63 ~~~~~h~~~ER~RR~~in~~~~~Lr~lvP--~~~k~dK~siL~~ai~yik~Lq~~~~ 117 (238)
..+.-|+..||+|=..+|+.|..||.++| .+.|++|.-.|.-|..||-.|-+-.+
T Consensus 77 ~qrv~anvrerqRtqsLn~AF~~lr~iiptlPsdklSkiqtLklA~ryidfl~~vl~ 133 (173)
T KOG4447|consen 77 KQRVMANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQVLQ 133 (173)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHhhcCCCCccccccccchhhcccCCchhhhccc
Confidence 34567899999999999999999999999 45699999999999999998866443
No 68
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.98 E-value=0.23 Score=33.74 Aligned_cols=45 Identities=9% Similarity=0.169 Sum_probs=34.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHhcCCceEEEEEeec--CCEEEEEEEEe
Q 026479 150 ASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVTL--GGRIRNVLIIA 194 (238)
Q Consensus 150 I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~--g~rv~~~f~V~ 194 (238)
+.+.+.+++|.|.+++.+|.+.|+.|........ ++...-.|.+.
T Consensus 2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v~ 48 (71)
T cd04903 2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEVD 48 (71)
T ss_pred EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEeC
Confidence 5678899999999999999999999998887652 34544444443
No 69
>PRK08577 hypothetical protein; Provisional
Probab=94.83 E-value=0.3 Score=39.22 Aligned_cols=68 Identities=25% Similarity=0.317 Sum_probs=48.1
Q ss_pred CCceEEEEEEEeCCCCCcHHHHHHHHHhcCCceEEEEEeecC--CEEEEEEEEeecCCCChhhHHHHHHHHH
Q 026479 143 DGTLIFKASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVTLG--GRIRNVLIIAAEKDHSIESVHFLQNALK 212 (238)
Q Consensus 143 ~g~~~v~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~g--~rv~~~f~V~~~~~~~~~~~~~L~~aL~ 212 (238)
.++..+.+++.+.+++|+|.+|+.+|.+.+.++.+.+..+.. +.+.-.|.+..... ...+..+.+.|.
T Consensus 52 ~~k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~~~--~~~l~~l~~~L~ 121 (136)
T PRK08577 52 PGKKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLSKS--DIDLEELEEELK 121 (136)
T ss_pred CCccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeCCc--hhhHHHHHHHHH
Confidence 334568899999999999999999999999999988876653 44444555554431 123445555544
No 70
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=94.81 E-value=0.18 Score=45.77 Aligned_cols=67 Identities=21% Similarity=0.183 Sum_probs=50.4
Q ss_pred EEEEEeCCCCCcHHHHHHHHHhcCCceEEEEEeec--CCEEEEEEEEeecCCCChhhHHHHHHHHHH-HHhh
Q 026479 149 KASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVTL--GGRIRNVLIIAAEKDHSIESVHFLQNALKS-LLER 217 (238)
Q Consensus 149 ~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~--g~rv~~~f~V~~~~~~~~~~~~~L~~aL~~-vl~~ 217 (238)
.|.+.|+|++|+...|..+|.+.|.+|++.+-+.. ++++.-.+.+.... .......|+++|.+ +-++
T Consensus 2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~~--~~~~~~~l~~~l~~~~~~~ 71 (280)
T TIGR00655 2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLEG--FRLEESSLLAAFKSALAEK 71 (280)
T ss_pred EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeCC--CCCCHHHHHHHHHHHHHHH
Confidence 47889999999999999999999999999997774 46665555555432 12356788888887 4444
No 71
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=94.81 E-value=0.34 Score=32.84 Aligned_cols=59 Identities=12% Similarity=0.192 Sum_probs=42.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHhcCCceEEEEEeec--CCEEEEEEEEeecCCCChhhHHHHHHHHH
Q 026479 150 ASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVTL--GGRIRNVLIIAAEKDHSIESVHFLQNALK 212 (238)
Q Consensus 150 I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~--g~rv~~~f~V~~~~~~~~~~~~~L~~aL~ 212 (238)
+.+.+.+++|+|.+|+.+|.+.|..+...+..+. ++.+.-.|.+... . ..+..+..+|.
T Consensus 3 l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~l~~~l~ 63 (72)
T cd04878 3 LSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEGD---D-DVIEQIVKQLN 63 (72)
T ss_pred EEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEECC---H-HHHHHHHHHHh
Confidence 5678899999999999999999999999987664 4555555555432 2 34445555444
No 72
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=94.63 E-value=0.33 Score=32.78 Aligned_cols=44 Identities=14% Similarity=0.089 Sum_probs=37.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHhcCCceEEEEEeecC--CEEEEEEEE
Q 026479 150 ASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVTLG--GRIRNVLII 193 (238)
Q Consensus 150 I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~g--~rv~~~f~V 193 (238)
+.+.+.+++|++.+|+.+|.+.|+.|.+..+...+ +...-.|.+
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v 47 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV 47 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc
Confidence 45688999999999999999999999999987754 666666666
No 73
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=94.62 E-value=0.27 Score=34.17 Aligned_cols=45 Identities=16% Similarity=0.209 Sum_probs=37.3
Q ss_pred EEEEEeCCCCCcHHHHHHHHHhcCCceEEEEEeecCCEEEEEEEEee
Q 026479 149 KASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVTLGGRIRNVLIIAA 195 (238)
Q Consensus 149 ~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~g~rv~~~f~V~~ 195 (238)
.+.|..+++||.|.+|+.+|.+.|++|.+.-+...++. .++.+..
T Consensus 3 ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~--~~~rl~~ 47 (66)
T cd04908 3 QLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF--GILRLIV 47 (66)
T ss_pred EEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC--CEEEEEE
Confidence 46778899999999999999999999999887666663 5666655
No 74
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.54 E-value=0.51 Score=35.65 Aligned_cols=50 Identities=8% Similarity=0.141 Sum_probs=40.4
Q ss_pred EEEEEeCCCCCcHHHHHHHHHhcCCceEEEEEeecC-CEEEEEEEEeecCC
Q 026479 149 KASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVTLG-GRIRNVLIIAAEKD 198 (238)
Q Consensus 149 ~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~g-~rv~~~f~V~~~~~ 198 (238)
.+-+...++||.|.+++.+|...|+.+.+-..-... ....+.|+|.....
T Consensus 16 slif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDieg~ 66 (90)
T cd04931 16 SLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLDKK 66 (90)
T ss_pred EEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcC
Confidence 344456889999999999999999999999876654 45678999987753
No 75
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.50 E-value=0.21 Score=34.71 Aligned_cols=46 Identities=11% Similarity=0.160 Sum_probs=35.0
Q ss_pred EEEEEeCCCCCcHHHHHHHHHhcCCceEEEEEeecC-C-EEEEEEEEe
Q 026479 149 KASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVTLG-G-RIRNVLIIA 194 (238)
Q Consensus 149 ~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~g-~-rv~~~f~V~ 194 (238)
.+.+.++++||.|.+++..|.+.|++|......... + .....|.++
T Consensus 3 ~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~ 50 (69)
T cd04909 3 DLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFK 50 (69)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEEC
Confidence 467889999999999999999999999988765542 2 333345554
No 76
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=94.46 E-value=0.19 Score=33.59 Aligned_cols=45 Identities=18% Similarity=0.160 Sum_probs=37.1
Q ss_pred EEEeCCCCCcHHHHHHHHHhcCCceEEEEEeecC-CEEEEEEEEee
Q 026479 151 SLCCEDRSDLLPDIIEILKSLHLKTLKSEMVTLG-GRIRNVLIIAA 195 (238)
Q Consensus 151 ~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~g-~rv~~~f~V~~ 195 (238)
.+...++||.|.+++.+|.+.|+.|.+..+...+ +...-.|.+..
T Consensus 2 ~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~ 47 (56)
T cd04889 2 SVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSD 47 (56)
T ss_pred EEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECC
Confidence 4678999999999999999999999888876655 67666666644
No 77
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]
Probab=94.06 E-value=0.037 Score=54.11 Aligned_cols=38 Identities=47% Similarity=0.643 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHhccCC----CCCCChhhHHHHHHHHHH
Q 026479 73 KRRRERINSHLNKLRSILSC----NSKLDKASLLARVVQRVR 110 (238)
Q Consensus 73 R~RR~~in~~~~~Lr~lvP~----~~k~dK~siL~~ai~yik 110 (238)
+|-|+|+|.-++.|.+|+|. ++|+||.|||.-+|.|++
T Consensus 34 KRHRdRLNaELD~lAsLLPfpqdiisKLDkLSVLRLSVSyLr 75 (712)
T KOG3560|consen 34 KRHRDRLNAELDHLASLLPFPQDIISKLDKLSVLRLSVSYLR 75 (712)
T ss_pred hhHHHHhhhHHHHHHHhcCCCHHHHhhhhhhhhhhhhHHHHH
Confidence 55689999999999999994 579999999999999987
No 78
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=94.02 E-value=0.4 Score=43.55 Aligned_cols=68 Identities=15% Similarity=0.196 Sum_probs=48.2
Q ss_pred EEEEEEEeCCCCCcHHHHHHHHHhcCCceEEEEEee--cCCEEEEEEEEeecCCCChhhHHHHHHHHHHHHhh
Q 026479 147 IFKASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVT--LGGRIRNVLIIAAEKDHSIESVHFLQNALKSLLER 217 (238)
Q Consensus 147 ~v~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist--~g~rv~~~f~V~~~~~~~~~~~~~L~~aL~~vl~~ 217 (238)
.+.|.+.|.||||+...|..+|.++|++|.+.+..+ .++.+.-.+.+.... ......|+++|.++-++
T Consensus 7 ~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p~---~~~~~~L~~~L~~l~~~ 76 (286)
T PRK13011 7 TFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSEE---GLDEDALRAGFAPIAAR 76 (286)
T ss_pred eEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecCC---CCCHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999763 233333233332222 23467788887765544
No 79
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.97 E-value=0.46 Score=32.09 Aligned_cols=44 Identities=14% Similarity=0.114 Sum_probs=33.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHhcCCceEEEEEeecC--CEEEEEEEE
Q 026479 150 ASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVTLG--GRIRNVLII 193 (238)
Q Consensus 150 I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~g--~rv~~~f~V 193 (238)
+.+.-+++||.|.+++.+|.+.|..|.+....... +...-.|.+
T Consensus 2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~v 47 (65)
T cd04882 2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRT 47 (65)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEe
Confidence 45567899999999999999999999877754443 444444444
No 80
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.83 E-value=0.53 Score=32.69 Aligned_cols=47 Identities=17% Similarity=0.171 Sum_probs=35.8
Q ss_pred EEEEEeCCCCCcHHHHHHHHHhcCCceEEEEEeec--CCEEEEEEEEee
Q 026479 149 KASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVTL--GGRIRNVLIIAA 195 (238)
Q Consensus 149 ~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~--g~rv~~~f~V~~ 195 (238)
.+.+..+++||.|.+++.+|.+.|+.|.+...... ++...-+|.+..
T Consensus 3 ~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~ 51 (72)
T cd04883 3 QIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQT 51 (72)
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEec
Confidence 56778899999999999999999999987764332 345555555544
No 81
>PRK07334 threonine dehydratase; Provisional
Probab=93.82 E-value=0.51 Score=44.62 Aligned_cols=65 Identities=12% Similarity=0.164 Sum_probs=49.7
Q ss_pred eEEEEEEEeCCCCCcHHHHHHHHHhcCCceEEEEEeec-----CCEEEEEEEEeecCCCChhhHHHHHHHHHH
Q 026479 146 LIFKASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVTL-----GGRIRNVLIIAAEKDHSIESVHFLQNALKS 213 (238)
Q Consensus 146 ~~v~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~-----g~rv~~~f~V~~~~~~~~~~~~~L~~aL~~ 213 (238)
..+.|+|.+.+|+|+|.+|+.+|.+.+++|.+.+..+. ++.+.-.|.+.... .+.+..|..+|++
T Consensus 325 y~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V~d---~~~L~~vi~~Lr~ 394 (403)
T PRK07334 325 RLARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIETRD---AAHLQEVIAALRA 394 (403)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEeCC---HHHHHHHHHHHHH
Confidence 45789999999999999999999999999999998764 56666666665542 3445555555553
No 82
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=93.72 E-value=1.5 Score=37.66 Aligned_cols=101 Identities=9% Similarity=0.065 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHhcccCCCCCCcceeeeccCCC-CCCCceEEEEEEEeCCCCCcHHHHHHHHHhcCCceEEEEEeecCC
Q 026479 107 QRVRELKEQTIELTEVESFPSETDEITVLASSDY-SSDGTLIFKASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVTLGG 185 (238)
Q Consensus 107 ~yik~Lq~~~~~l~~~~~~p~~~~ev~v~~~~d~-~~~g~~~v~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~g~ 185 (238)
+++..|+..+..+.++... .+.+...... .......+.|++...||||+..+|.++|.+.|++|.+-+..+.+.
T Consensus 59 ~~~~~le~~L~~l~~~~~L-----~i~v~~~~~~~~~~~~~~~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a 133 (190)
T PRK11589 59 NAITLIESTLPLKGAELDL-----LIVMKRTTARPRPAMPATVWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPA 133 (190)
T ss_pred hHHHHHHHHHHhhhhhcCe-----EEEEEeccccccccCCceEEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecC
Confidence 4777777777777644211 1111110000 011112478999999999999999999999999999988877663
Q ss_pred ------EEEEEEEEeecCCCChhhHHHHHHHHHHHH
Q 026479 186 ------RIRNVLIIAAEKDHSIESVHFLQNALKSLL 215 (238)
Q Consensus 186 ------rv~~~f~V~~~~~~~~~~~~~L~~aL~~vl 215 (238)
.+.-.+.+....+ .....|+.+|..+-
T Consensus 134 ~~~~~~lf~~~~~v~lP~~---~~~~~L~~~l~~l~ 166 (190)
T PRK11589 134 EGERPAQLHIQITAHSPAS---QDAANIEQAFKALC 166 (190)
T ss_pred CCCCcccEEEEEEEEcCCC---CCHHHHHHHHHHHH
Confidence 3333344434432 23566777665544
No 83
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.62 E-value=0.58 Score=32.92 Aligned_cols=60 Identities=15% Similarity=0.195 Sum_probs=39.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHhcCCceEEEEEeec---CCEEEEEEEEeecCCCChhhHHHHHHHHH
Q 026479 150 ASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVTL---GGRIRNVLIIAAEKDHSIESVHFLQNALK 212 (238)
Q Consensus 150 I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~---g~rv~~~f~V~~~~~~~~~~~~~L~~aL~ 212 (238)
+.+.-+++||.|.+++..|.+.|..|++...... .+.....+.+..+. ....+.|.++|.
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~~~~~~~~~~~v~v~~e~---~~~~~~i~~~L~ 64 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFEDAPDGMRRVFIRVTPMD---RSKENELIEELK 64 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccccCCCCccEEEEEEEEec---chHHHHHHHHHh
Confidence 4566789999999999999999999998876654 23333444444422 112445555554
No 84
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=93.47 E-value=0.37 Score=43.59 Aligned_cols=72 Identities=15% Similarity=0.197 Sum_probs=52.4
Q ss_pred EEEEEEEeCCCCCcHHHHHHHHHhcCCceEEEEEeecCCEEEEEEEEeecC--CCChhhHHHHHHHHHHHHhhcCC
Q 026479 147 IFKASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVTLGGRIRNVLIIAAEK--DHSIESVHFLQNALKSLLERSNS 220 (238)
Q Consensus 147 ~v~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~g~rv~~~f~V~~~~--~~~~~~~~~L~~aL~~vl~~~~~ 220 (238)
.+.+.++|++++|+...|...|.+.|..|++++--+ +.....|..+..- +......+.|+.+|..+.++.+.
T Consensus 7 ~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~--D~~~g~FFmR~~f~~~~~~~~~~~l~~~f~~~a~~f~m 80 (287)
T COG0788 7 TFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFD--DPETGRFFMRVEFEGEGGPLDREALRAAFAPLAEEFGM 80 (287)
T ss_pred ceEEEEecCCCCCcHHHHHHHHHHcCCceeeccccc--ccccCeEEEEEEEecCCCcccHHHHHHHHHHHHHhhCc
Confidence 467889999999999999999999999999998653 3333344444332 22235667888888886665554
No 85
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=93.36 E-value=0.13 Score=52.26 Aligned_cols=59 Identities=15% Similarity=0.133 Sum_probs=48.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHHhcCCceEEEEEeecCCEEEEEEEEeecCCCChhhHHHHHHHHHHHHh
Q 026479 149 KASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVTLGGRIRNVLIIAAEKDHSIESVHFLQNALKSLLE 216 (238)
Q Consensus 149 ~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~g~rv~~~f~V~~~~~~~~~~~~~L~~aL~~vl~ 216 (238)
.++|.+.+|+|+|..|+.+|. +|..|+++|.|..+++.|++... .....+..++..++.
T Consensus 633 ~~e~r~~dr~g~l~~~~~~l~----~~~~~~~~~~g~~~~~~~~~~~~-----~~r~~~~~~~~~~~~ 691 (693)
T PRK00227 633 ILEVRTEDRRGALGALLGVLP----DLLWITASTPGATMIVQAALKPG-----FDRATVERDVTRVLA 691 (693)
T ss_pred EEEEEeCccccHHHHHHHHhh----hhhhHhhcCCCcceEEEEEecCc-----ccHHHHHHHHHHHHh
Confidence 589999999999999999999 89999999999999999999721 123456666666653
No 86
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=93.20 E-value=0.55 Score=39.09 Aligned_cols=63 Identities=10% Similarity=0.144 Sum_probs=49.2
Q ss_pred EEEEEeCCCCCcHHHHHHHHHhcCCceEEEEEeecC--CEEEEEEEEeecCCCChhhHHHHHHHHHHHH
Q 026479 149 KASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVTLG--GRIRNVLIIAAEKDHSIESVHFLQNALKSLL 215 (238)
Q Consensus 149 ~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~g--~rv~~~f~V~~~~~~~~~~~~~L~~aL~~vl 215 (238)
.+.+.-+++||.|.+|+..|...|+.|.+..+...+ +...-+|.|.. .+..+..|...|.+++
T Consensus 3 ~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~----d~~~i~qi~kQl~Kli 67 (157)
T TIGR00119 3 ILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVG----DDKVLEQITKQLNKLV 67 (157)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEEC----CHHHHHHHHHHHhcCc
Confidence 467788999999999999999999999999887665 45555666654 2456677888877665
No 87
>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription]
Probab=93.13 E-value=0.054 Score=48.47 Aligned_cols=51 Identities=24% Similarity=0.319 Sum_probs=43.8
Q ss_pred hhhccHHHHHHHHHHHHHHHHHHhccCC---CCCCChhhHHHHHHHHHHHHHHH
Q 026479 65 LKNHKEAEKRRRERINSHLNKLRSILSC---NSKLDKASLLARVVQRVRELKEQ 115 (238)
Q Consensus 65 ~~~h~~~ER~RR~~in~~~~~Lr~lvP~---~~k~dK~siL~~ai~yik~Lq~~ 115 (238)
+..-|..||+|--.+|+.|+.||.++|. ..|+.|.-.|.-|-.||..|++-
T Consensus 73 R~kaNaRER~RMH~LNdAld~LReviP~~~~~~klskIetl~~a~~yi~als~~ 126 (254)
T KOG3898|consen 73 RLKANARERTRMHDLNDALDALREVIPHGLHPPKLSKIETLRLAANYIAALSEV 126 (254)
T ss_pred cccccchhhccccchhHHHHHhHhhccCcCCCCCCCcchhHHhhhcchhhhccc
Confidence 3445788999999999999999999994 45889999999999999988753
No 88
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=92.96 E-value=0.27 Score=37.36 Aligned_cols=71 Identities=11% Similarity=0.210 Sum_probs=55.3
Q ss_pred EEEEEEEeCCCCCcHHHHHHHHHhcCCceEEEEEeecCCEEEEEEEEeecCCCChhhHHHHHHHHHHHHhhcC
Q 026479 147 IFKASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVTLGGRIRNVLIIAAEKDHSIESVHFLQNALKSLLERSN 219 (238)
Q Consensus 147 ~v~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~g~rv~~~f~V~~~~~~~~~~~~~L~~aL~~vl~~~~ 219 (238)
.+.|.+...||+|+...|..+|.++|++|++.+=+-..|++.=.+.|...+. ......|+..|.....+-+
T Consensus 3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~~~~~--~~d~~~lr~~l~~~~~~lg 73 (90)
T COG3830 3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVDISKE--VVDFAALRDELAAEGKKLG 73 (90)
T ss_pred eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEEcCChH--hccHHHHHHHHHHHHHhcC
Confidence 3678999999999999999999999999999998888898777777765532 2344566666665554444
No 89
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=92.95 E-value=0.21 Score=34.43 Aligned_cols=45 Identities=18% Similarity=0.087 Sum_probs=34.6
Q ss_pred EEEeCCCCCcHHHHHHHHHhcCCceEEEEEeecCCEEEEEEEEee
Q 026479 151 SLCCEDRSDLLPDIIEILKSLHLKTLKSEMVTLGGRIRNVLIIAA 195 (238)
Q Consensus 151 ~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~g~rv~~~f~V~~ 195 (238)
-+.+.++||+|.+++.+|.+.|..|...+..+.++.+.-.|.+..
T Consensus 3 ~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~~~ 47 (69)
T cd04901 3 LHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDIDS 47 (69)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEcCC
Confidence 357899999999999999999999987766555556555555433
No 90
>KOG4395 consensus Transcription factor Atonal, contains HTH domain [Transcription]
Probab=92.63 E-value=0.22 Score=44.51 Aligned_cols=52 Identities=23% Similarity=0.224 Sum_probs=44.8
Q ss_pred hhccHHHHHHHHHHHHHHHHHHhccCCC---CCCChhhHHHHHHHHHHHHHHHHH
Q 026479 66 KNHKEAEKRRRERINSHLNKLRSILSCN---SKLDKASLLARVVQRVRELKEQTI 117 (238)
Q Consensus 66 ~~h~~~ER~RR~~in~~~~~Lr~lvP~~---~k~dK~siL~~ai~yik~Lq~~~~ 117 (238)
..-+..||+|-..+|..|+.||..||.. .|++|-..|.+|-.||--|-...+
T Consensus 176 ~aanarErrrm~gLN~AfD~Lr~v~p~~~~d~~LSkyetLqmaq~yi~~l~~~l~ 230 (285)
T KOG4395|consen 176 LAANARERRRMNGLNSAFDRLRLVVPDGDSDKKLSKYETLQMAQGYILALGCLLD 230 (285)
T ss_pred cccchHHHHHhhhHHHHHHHHHHhcCCCCccchhhhhhHHHHHHHHHhhhHHhhc
Confidence 4557899999999999999999999954 588899999999999997766553
No 91
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=92.37 E-value=1.1 Score=37.45 Aligned_cols=63 Identities=11% Similarity=0.197 Sum_probs=47.9
Q ss_pred EEEEEeCCCCCcHHHHHHHHHhcCCceEEEEEeecC--CEEEEEEEEeecCCCChhhHHHHHHHHHHHH
Q 026479 149 KASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVTLG--GRIRNVLIIAAEKDHSIESVHFLQNALKSLL 215 (238)
Q Consensus 149 ~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~g--~rv~~~f~V~~~~~~~~~~~~~L~~aL~~vl 215 (238)
.+.+.-+++||.|.+|+..|...|+.|.+-.+.... +...-+|.+... +..++.|...|.+++
T Consensus 4 ~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~~----~~~i~qi~kQl~KLi 68 (161)
T PRK11895 4 TLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSGD----EQVIEQITKQLNKLI 68 (161)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEECC----HHHHHHHHHHHhccc
Confidence 467788999999999999999999999999887654 455555655432 355667777776655
No 92
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=92.10 E-value=0.85 Score=33.51 Aligned_cols=63 Identities=16% Similarity=0.084 Sum_probs=44.6
Q ss_pred EEEEEeCCCCCcHHHHHHHHHhcCCceEEEEEeecCC--EEEEEEEEeecCCCChhhHHHHHHHHHHHH
Q 026479 149 KASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVTLGG--RIRNVLIIAAEKDHSIESVHFLQNALKSLL 215 (238)
Q Consensus 149 ~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~g~--rv~~~f~V~~~~~~~~~~~~~L~~aL~~vl 215 (238)
.+.+..+++||+|.+++.+|..-|+.|.+-+++...+ ...-++.+. + ++..++.|...|.+++
T Consensus 4 tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~--~--~~~~i~qi~kQL~KLi 68 (76)
T PRK06737 4 TFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAV--C--TENEATLLVSQLKKLI 68 (76)
T ss_pred EEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEE--C--CHHHHHHHHHHHhCCc
Confidence 4677889999999999999999999999988875543 333333332 2 2345566666666554
No 93
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=92.04 E-value=1.3 Score=37.46 Aligned_cols=64 Identities=17% Similarity=0.227 Sum_probs=47.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHHhcCCceEEEEEee--cCCEEEEEEEEeecCCCChhhHHHHHHHHHHHHh
Q 026479 149 KASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVT--LGGRIRNVLIIAAEKDHSIESVHFLQNALKSLLE 216 (238)
Q Consensus 149 ~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist--~g~rv~~~f~V~~~~~~~~~~~~~L~~aL~~vl~ 216 (238)
.+.+..+++||+|.+|+..|...|++|.+-++.. ..+...-++.+... ...+..|++.|.++++
T Consensus 4 ~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~~~----~~~ieqL~kQL~KLid 69 (174)
T CHL00100 4 TLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVPGD----DRTIEQLTKQLYKLVN 69 (174)
T ss_pred EEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEECC----HHHHHHHHHHHHHHhH
Confidence 5778889999999999999999999999999876 44444445554322 2236778877776653
No 94
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=92.01 E-value=1.5 Score=31.43 Aligned_cols=46 Identities=7% Similarity=0.106 Sum_probs=38.2
Q ss_pred EEeCCCCCcHHHHHHHHHhcCCceEEEEEeecCC-EEEEEEEEeecC
Q 026479 152 LCCEDRSDLLPDIIEILKSLHLKTLKSEMVTLGG-RIRNVLIIAAEK 197 (238)
Q Consensus 152 i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~g~-rv~~~f~V~~~~ 197 (238)
+...++||.|.+++..|...|+.+.+-..-...+ ...+.|+|....
T Consensus 5 f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~ 51 (74)
T cd04904 5 FSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEV 51 (74)
T ss_pred EEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEc
Confidence 3447799999999999999999999998766554 477899998775
No 95
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=91.94 E-value=1 Score=31.05 Aligned_cols=45 Identities=18% Similarity=0.200 Sum_probs=36.1
Q ss_pred EEEeCCCCCcHHHHHHHHHhcCCceEEEEEee--cCCEEEEEEEEee
Q 026479 151 SLCCEDRSDLLPDIIEILKSLHLKTLKSEMVT--LGGRIRNVLIIAA 195 (238)
Q Consensus 151 ~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist--~g~rv~~~f~V~~ 195 (238)
-+...+++|.+.+++..|.+.|+.|.+..+.. .++...-+|.+..
T Consensus 3 ~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~~ 49 (73)
T cd04902 3 VVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDE 49 (73)
T ss_pred EEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeCC
Confidence 35789999999999999999999998877644 4567766666654
No 96
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=91.81 E-value=1.2 Score=32.25 Aligned_cols=45 Identities=9% Similarity=0.119 Sum_probs=37.7
Q ss_pred EeCCCCCcHHHHHHHHHhcCCceEEEEEeecC-CEEEEEEEEeecC
Q 026479 153 CCEDRSDLLPDIIEILKSLHLKTLKSEMVTLG-GRIRNVLIIAAEK 197 (238)
Q Consensus 153 ~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~g-~rv~~~f~V~~~~ 197 (238)
..+++||.|.+++..|+..|+.+.+-..-... ....+.|+|..+.
T Consensus 6 ~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~e~ 51 (74)
T cd04929 6 SLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDCEC 51 (74)
T ss_pred EcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEc
Confidence 34788999999999999999999999876653 4578899998774
No 97
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=91.55 E-value=0.93 Score=46.15 Aligned_cols=66 Identities=15% Similarity=0.106 Sum_probs=53.4
Q ss_pred EEEEEe-CCCCCcHHHHHHHHHhcCCceEEEEEeecCCEEEEEEEEeecCCCChhhHHHHHHHHHHHHh
Q 026479 149 KASLCC-EDRSDLLPDIIEILKSLHLKTLKSEMVTLGGRIRNVLIIAAEKDHSIESVHFLQNALKSLLE 216 (238)
Q Consensus 149 ~I~i~c-~~r~GlL~~Il~aLe~lgL~V~~A~Ist~g~rv~~~f~V~~~~~~~~~~~~~L~~aL~~vl~ 216 (238)
.+.|.. ++++|+|.+++.+|.-.|+.|.+|++.+ +|.....|.|....+.. .....|.++++..+.
T Consensus 548 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~ 614 (693)
T PRK00227 548 FFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRANGPQD-FDPQEFLQAYKSGVY 614 (693)
T ss_pred eEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEecCCCCC-CChHHHHHHHHHhhc
Confidence 455555 9999999999999999999999999999 89999999998865543 344566777776653
No 98
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=91.50 E-value=1 Score=31.55 Aligned_cols=56 Identities=13% Similarity=0.243 Sum_probs=40.7
Q ss_pred CCCCcHHHHHHHHHhcCCceEEEEEee--cCCEEEEEEEEeecCCCChhhHHHHHHHHHHHH
Q 026479 156 DRSDLLPDIIEILKSLHLKTLKSEMVT--LGGRIRNVLIIAAEKDHSIESVHFLQNALKSLL 215 (238)
Q Consensus 156 ~r~GlL~~Il~aLe~lgL~V~~A~Ist--~g~rv~~~f~V~~~~~~~~~~~~~L~~aL~~vl 215 (238)
++||+|.+|+..|..-|+.|.+-+++. .++...-++.+...+ ..++.|...|.+++
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~~~----~~i~~l~~Ql~Kli 58 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSGDD----REIEQLVKQLEKLI 58 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES-C----CHHHHHHHHHHCST
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEeeCc----hhHHHHHHHHhccC
Confidence 579999999999999999999999888 556666666654432 35566777666554
No 99
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=91.15 E-value=1.3 Score=33.30 Aligned_cols=66 Identities=17% Similarity=0.109 Sum_probs=46.4
Q ss_pred EEEEEeCCCCCcHHHHHHHHHhcCCceEEEEEeecCCEEEEEEEEeecCCCChhhHHHHHHHHHHHH
Q 026479 149 KASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVTLGGRIRNVLIIAAEKDHSIESVHFLQNALKSLL 215 (238)
Q Consensus 149 ~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~g~rv~~~f~V~~~~~~~~~~~~~L~~aL~~vl 215 (238)
.+.+..+++||+|.++...|..-|+.|.+-.++...+.-+.-+.+-... +++..+..|...|.+++
T Consensus 4 ~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~-~d~~~ieqI~kQL~Kli 69 (84)
T PRK13562 4 ILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDI-QDDTSLHILIKKLKQQI 69 (84)
T ss_pred EEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeC-CCHHHHHHHHHHHhCCc
Confidence 4667789999999999999999999999999877665433333333321 12355667777776654
No 100
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]
Probab=90.73 E-value=0.21 Score=50.18 Aligned_cols=41 Identities=32% Similarity=0.518 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHhccCC----CCCCChhhHHHHHHHHHH
Q 026479 70 EAEKRRRERINSHLNKLRSILSC----NSKLDKASLLARVVQRVR 110 (238)
Q Consensus 70 ~~ER~RR~~in~~~~~Lr~lvP~----~~k~dK~siL~~ai~yik 110 (238)
-+-|-||.|=|+-|.+|..+||- .+-+|||+|+.-||-|+|
T Consensus 52 dAARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLR 96 (768)
T KOG3558|consen 52 DAARSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLR 96 (768)
T ss_pred hhhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHH
Confidence 56799999999999999999993 458999999999999998
No 101
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]
Probab=90.71 E-value=0.22 Score=47.47 Aligned_cols=42 Identities=31% Similarity=0.443 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCC----CCCChhhHHHHHHHHHHH
Q 026479 70 EAEKRRRERINSHLNKLRSILSCN----SKLDKASLLARVVQRVRE 111 (238)
Q Consensus 70 ~~ER~RR~~in~~~~~Lr~lvP~~----~k~dK~siL~~ai~yik~ 111 (238)
-+-|.||++-|.-|.+|..++|-. +.+||++|+.-|..|||.
T Consensus 7 naA~tRRekEN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlKm 52 (598)
T KOG3559|consen 7 NAARTRREKENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLKM 52 (598)
T ss_pred hHHHHHHHhhcchHHHHHhhccchhhhhhccchhhhhhHHHHHHHH
Confidence 356899999999999999999943 479999999999999984
No 102
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=90.49 E-value=2 Score=35.13 Aligned_cols=67 Identities=24% Similarity=0.377 Sum_probs=53.7
Q ss_pred ceEEEEEEEeCCCCCcHHHHHHHHHhcCCceEEEE-EeecCCEEEEEEEEeecCCCChhhHHHHHHHHHH
Q 026479 145 TLIFKASLCCEDRSDLLPDIIEILKSLHLKTLKSE-MVTLGGRIRNVLIIAAEKDHSIESVHFLQNALKS 213 (238)
Q Consensus 145 ~~~v~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~-Ist~g~rv~~~f~V~~~~~~~~~~~~~L~~aL~~ 213 (238)
+..+-+.+.-++|.|.|++++.++...++.|+..+ --..+|++-.++.+.... -+..++.|-.+|++
T Consensus 70 ~ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtlsi~~ss--m~~~V~~ii~kl~k 137 (150)
T COG4492 70 ERIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIPLQGRANVTLSIDTSS--MEKDVDKIIEKLRK 137 (150)
T ss_pred ceEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccccCceeeEEEEEEchh--hhhhHHHHHHHHhc
Confidence 46788889999999999999999999999999888 567889988888886663 23456666666654
No 103
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=90.19 E-value=1.9 Score=44.34 Aligned_cols=64 Identities=19% Similarity=0.164 Sum_probs=48.9
Q ss_pred eEEEEEEEeCCCCCcHHHHHHHHHhcCCceEEEEEeec--CCEEEEEEEEeecCCCChhhHHHHHHHHH
Q 026479 146 LIFKASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVTL--GGRIRNVLIIAAEKDHSIESVHFLQNALK 212 (238)
Q Consensus 146 ~~v~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~--g~rv~~~f~V~~~~~~~~~~~~~L~~aL~ 212 (238)
..+.|.|.+.+|+|+|.+|+.+|.+.++.|.+.++.+. ++.+.-.|.|.... ...+..|-.+|+
T Consensus 665 ~~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV~~---~~~L~~l~~~L~ 730 (743)
T PRK10872 665 YSLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYN---LQVLGRVLGKLN 730 (743)
T ss_pred eEEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEECC---HHHHHHHHHHHh
Confidence 34578889999999999999999999999999998765 46666667776553 344555555554
No 104
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=90.14 E-value=2 Score=31.53 Aligned_cols=63 Identities=14% Similarity=0.269 Sum_probs=46.2
Q ss_pred EEEEEEeCCCCCcHHHHHHHHHhcCCceEEEEEee--cCCEEEEEEEEeecCCCChhhHHHHHHHHHHHH
Q 026479 148 FKASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVT--LGGRIRNVLIIAAEKDHSIESVHFLQNALKSLL 215 (238)
Q Consensus 148 v~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist--~g~rv~~~f~V~~~~~~~~~~~~~L~~aL~~vl 215 (238)
..+.+.-.++||+|.+++..|..-|+.|.+-++.. .++...-++.+. + +..++.|...|.+++
T Consensus 4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~--~---~~~i~ql~kQL~KL~ 68 (76)
T PRK11152 4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVA--S---ERPIDLLSSQLNKLV 68 (76)
T ss_pred EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEEC--C---CchHHHHHHHHhcCc
Confidence 35677789999999999999999999999999877 445555555652 2 345556666665544
No 105
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=88.36 E-value=2.9 Score=42.69 Aligned_cols=64 Identities=5% Similarity=0.027 Sum_probs=48.1
Q ss_pred eEEEEEEEeCCCCCcHHHHHHHHHhcCCceEEEEEeecC-CEEEEEEEEeecCCCChhhHHHHHHHHH
Q 026479 146 LIFKASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVTLG-GRIRNVLIIAAEKDHSIESVHFLQNALK 212 (238)
Q Consensus 146 ~~v~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~g-~rv~~~f~V~~~~~~~~~~~~~L~~aL~ 212 (238)
..+.|.|.+.+++|+|.+|+.+|.+.++.|.++++.+.. +.+.-.|.+.... ...+..|-.+|+
T Consensus 625 ~~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV~~---~~~L~~i~~~Lr 689 (702)
T PRK11092 625 FIAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTARD---RVHLANIMRKIR 689 (702)
T ss_pred eEEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEECC---HHHHHHHHHHHh
Confidence 346788999999999999999999999999999987765 4555556665553 344555555554
No 106
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=87.17 E-value=3.8 Score=41.73 Aligned_cols=64 Identities=13% Similarity=0.165 Sum_probs=47.9
Q ss_pred eEEEEEEEeCCCCCcHHHHHHHHHhcCCceEEEEEeecC-CEEEEEEEEeecCCCChhhHHHHHHHHH
Q 026479 146 LIFKASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVTLG-GRIRNVLIIAAEKDHSIESVHFLQNALK 212 (238)
Q Consensus 146 ~~v~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~g-~rv~~~f~V~~~~~~~~~~~~~L~~aL~ 212 (238)
..+.|.|.+.+++|+|.+|+.+|.+.+..|.+.++.+.. +.+.-.|.|.... ...+..|-.+|+
T Consensus 609 f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ieV~~---~~~L~~ii~~L~ 673 (683)
T TIGR00691 609 FIVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVEIKN---YKHLLKIMLKIK 673 (683)
T ss_pred eEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEEECC---HHHHHHHHHHHh
Confidence 456788999999999999999999999999999987764 5555556665543 344455555544
No 107
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=86.69 E-value=5.8 Score=27.58 Aligned_cols=59 Identities=17% Similarity=0.222 Sum_probs=38.7
Q ss_pred EEEeCCCCCcHHHHHHHHHhcCCceEEEEEeecC-CEEEEEEEEeecCCCChhhHHHHHHHHHH
Q 026479 151 SLCCEDRSDLLPDIIEILKSLHLKTLKSEMVTLG-GRIRNVLIIAAEKDHSIESVHFLQNALKS 213 (238)
Q Consensus 151 ~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~g-~rv~~~f~V~~~~~~~~~~~~~L~~aL~~ 213 (238)
++.-+++||-|.+++++|.+ |.+|+..+-...+ +.+.-.+.++..+ .+..+.|.++|.+
T Consensus 2 ~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~~~---~~~~~~i~~~L~~ 61 (68)
T cd04885 2 AVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQVPD---REDLAELKERLEA 61 (68)
T ss_pred EEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEeCC---HHHHHHHHHHHHH
Confidence 34568999999999999999 9998877765433 2333334444332 3455666666653
No 108
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=85.95 E-value=4.7 Score=30.98 Aligned_cols=65 Identities=3% Similarity=0.076 Sum_probs=46.2
Q ss_pred EEEEEEeCCCCCcHHHHHHHHHhcCCceEEEEEeecCCEEEEEEEEeecCCCChhhHHHHHHHHHHHH
Q 026479 148 FKASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVTLGGRIRNVLIIAAEKDHSIESVHFLQNALKSLL 215 (238)
Q Consensus 148 v~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~g~rv~~~f~V~~~~~~~~~~~~~L~~aL~~vl 215 (238)
..|++..+++||+|.+|.-.|..-|..|-+-.++..+..-..-+.+-..+ +..+..|...|.+++
T Consensus 9 ~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~~---~~~i~Qi~kQL~KLi 73 (96)
T PRK08178 9 VILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVND---DQRLEQMISQIEKLE 73 (96)
T ss_pred EEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEcC---chHHHHHHHHHhCCc
Confidence 45778889999999999999999999999888776654333333332232 246667777776655
No 109
>PRK11899 prephenate dehydratase; Provisional
Probab=85.86 E-value=5.9 Score=35.93 Aligned_cols=61 Identities=13% Similarity=0.028 Sum_probs=46.2
Q ss_pred EEeCCCCCcHHHHHHHHHhcCCceEEEEEeecC-CEEEEEEEEeecCCCChhhHHHHHHHHHHHH
Q 026479 152 LCCEDRSDLLPDIIEILKSLHLKTLKSEMVTLG-GRIRNVLIIAAEKDHSIESVHFLQNALKSLL 215 (238)
Q Consensus 152 i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~g-~rv~~~f~V~~~~~~~~~~~~~L~~aL~~vl 215 (238)
+..+++||.|.+++.+|...|+++..-..-... +...++|++........ ..++++|.++-
T Consensus 199 ~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~eg~~~d---~~v~~aL~~l~ 260 (279)
T PRK11899 199 FRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADIEGHPED---RNVALALEELR 260 (279)
T ss_pred EEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEEECCCCC---HHHHHHHHHHH
Confidence 344789999999999999999999999887764 45889999988764222 24556655543
No 110
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=84.81 E-value=1.1 Score=37.85 Aligned_cols=62 Identities=19% Similarity=0.323 Sum_probs=52.0
Q ss_pred EEEEEEEeCCCCCcHHHHHHHHHhcCCceEEEEEeecCCEEEEEEEEeecCCCChhhHHHHHHHHH
Q 026479 147 IFKASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVTLGGRIRNVLIIAAEKDHSIESVHFLQNALK 212 (238)
Q Consensus 147 ~v~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~g~rv~~~f~V~~~~~~~~~~~~~L~~aL~ 212 (238)
.+.|.....+|||+...|+++..+.|-.++.++++.+|+.+.-+..++... +.+..|+.+|-
T Consensus 5 ~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a~i~lisgs~----dav~~le~~l~ 66 (176)
T COG2716 5 YLVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFAGIMLISGSW----DAVTLLEATLP 66 (176)
T ss_pred EEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhcceeEEEEEeeCH----HHHHHHHHHhh
Confidence 367888899999999999999999999999999999999987777776664 34556666654
No 111
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=84.35 E-value=5.6 Score=31.33 Aligned_cols=46 Identities=11% Similarity=0.108 Sum_probs=37.9
Q ss_pred EEeCCCCCcHHHHHHHHHhcCCceEEEEEeecC-CEEEEEEEEeecC
Q 026479 152 LCCEDRSDLLPDIIEILKSLHLKTLKSEMVTLG-GRIRNVLIIAAEK 197 (238)
Q Consensus 152 i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~g-~rv~~~f~V~~~~ 197 (238)
+...++||.|.+++..|...|+.+.+-..-+.. ....+.|+|....
T Consensus 46 fsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdieg 92 (115)
T cd04930 46 FSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRCEV 92 (115)
T ss_pred EEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEEEe
Confidence 344789999999999999999999999876663 4466889998764
No 112
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=83.74 E-value=0.33 Score=48.96 Aligned_cols=63 Identities=22% Similarity=0.268 Sum_probs=53.9
Q ss_pred HhhhccHHHHHHHHHHHHHHHHHHhccCCCC-----CCChhhHHHHHHHHHHHHHHHHHHHhcccCCC
Q 026479 64 ALKNHKEAEKRRRERINSHLNKLRSILSCNS-----KLDKASLLARVVQRVRELKEQTIELTEVESFP 126 (238)
Q Consensus 64 ~~~~h~~~ER~RR~~in~~~~~Lr~lvP~~~-----k~dK~siL~~ai~yik~Lq~~~~~l~~~~~~p 126 (238)
....|+.+|.+||++|.-+|..|.+++-+.. |+.++.-+...++||..++.+...+.++...+
T Consensus 651 r~it~~Sa~qkrr~n~kl~~~~~Ns~~Sn~~~l~s~k~t~~~~~q~~vhYi~~t~~e~~~v~~e~~~l 718 (856)
T KOG3582|consen 651 RPITHISAEQKRRFNIKLQFDVLNSLSSNSSSLSSIKTTNSNSLQKTVHYINVTQQERVPVQEEAHSL 718 (856)
T ss_pred CcccCccHHHHHHhhHHhhhHhhhhhccCcccccchhhhccccccCceeeeeccchhccccchhhhhh
Confidence 3467999999999999999999999997654 66777789999999999999998888776443
No 113
>PRK06382 threonine dehydratase; Provisional
Probab=81.40 E-value=11 Score=35.62 Aligned_cols=51 Identities=16% Similarity=0.079 Sum_probs=39.7
Q ss_pred eEEEEEEEeCCCCCcHHHHHHHHHhcCCceEEEEEe-----ecCCEEEEEEEEeec
Q 026479 146 LIFKASLCCEDRSDLLPDIIEILKSLHLKTLKSEMV-----TLGGRIRNVLIIAAE 196 (238)
Q Consensus 146 ~~v~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Is-----t~g~rv~~~f~V~~~ 196 (238)
..+.+.|.-+|+||.|.+|++.|.+.|.+|++.... .-.+...-+|.|+..
T Consensus 329 ~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~ 384 (406)
T PRK06382 329 QLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVR 384 (406)
T ss_pred CEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeC
Confidence 456788889999999999999999999999887653 223455666666655
No 114
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=80.07 E-value=9.2 Score=25.62 Aligned_cols=45 Identities=7% Similarity=0.005 Sum_probs=30.8
Q ss_pred EEEEEe---CCCCCcHHHHHHHHHhcCCceEEEEEeecCCEEEEEEEEee
Q 026479 149 KASLCC---EDRSDLLPDIIEILKSLHLKTLKSEMVTLGGRIRNVLIIAA 195 (238)
Q Consensus 149 ~I~i~c---~~r~GlL~~Il~aLe~lgL~V~~A~Ist~g~rv~~~f~V~~ 195 (238)
.|.+.+ .+.+|++.+++++|.+.|+.|.-..-++ .+ ..-.|.|..
T Consensus 3 ~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~~~-s~-~~is~~v~~ 50 (66)
T cd04922 3 ILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQGS-SE-RNISAVIDE 50 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC-cc-cEEEEEEeH
Confidence 355555 3578999999999999999997665444 22 334455544
No 115
>PRK08198 threonine dehydratase; Provisional
Probab=77.57 E-value=22 Score=33.36 Aligned_cols=64 Identities=17% Similarity=0.269 Sum_probs=45.4
Q ss_pred eEEEEEEEeCCCCCcHHHHHHHHHhcCCceEEEEEeec-----CCEEEEEEEEeecCCCChhhHHHHHHHHH
Q 026479 146 LIFKASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVTL-----GGRIRNVLIIAAEKDHSIESVHFLQNALK 212 (238)
Q Consensus 146 ~~v~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~-----g~rv~~~f~V~~~~~~~~~~~~~L~~aL~ 212 (238)
..+.+.+.-+|+||.|.++++.|.+.|.+|+..+..-. .+.+.-.+.++.. +.+..+.|.++|.
T Consensus 326 r~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~~~~~~~~~~~~~v~v~ie~~---~~~~~~~l~~~L~ 394 (404)
T PRK08198 326 RYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHDRFSPDLRLGEVEVELTLETR---GPEHIEEILDALR 394 (404)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEEccCCCCCceEEEEEEEEeC---CHHHHHHHHHHHH
Confidence 45778888999999999999999999999998876532 3455555555543 2334455555554
No 116
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=77.40 E-value=19 Score=40.15 Aligned_cols=76 Identities=9% Similarity=0.106 Sum_probs=56.1
Q ss_pred eEEEEEEEeCCCCCcHHHHHHHHHhcCCceEEEE---Eeec--CCEEEEEEEEeecCCCC---hhhHHHHHHHHHHHHhh
Q 026479 146 LIFKASLCCEDRSDLLPDIIEILKSLHLKTLKSE---MVTL--GGRIRNVLIIAAEKDHS---IESVHFLQNALKSLLER 217 (238)
Q Consensus 146 ~~v~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~---Ist~--g~rv~~~f~V~~~~~~~---~~~~~~L~~aL~~vl~~ 217 (238)
..+.++|.....+..|++++-+|+++||.|+... |.+- ...+++-|.+....+.. ....+.+.++|..+...
T Consensus 488 ~~~~lkiy~~~~~~~Ls~vlPilenlGl~V~~e~~~~i~~~~~~~~~i~~F~l~~~~~~~~~~~~~~~~~~~a~~~v~~g 567 (1528)
T PF05088_consen 488 GRLRLKIYHPGEPLPLSDVLPILENLGLRVIDERPYEIRRADGRRVWIHDFGLQYPDGDALDLDDIRERFEEAFEAVWNG 567 (1528)
T ss_pred CeEEEEEEcCCCCcCHHHHHHHHHhCCCEEEEEecceeecCCCceEEEEEEEEecCCCccccHHHHHHHHHHHHHHHhcC
Confidence 4578888888899999999999999999999987 4443 23688889998776531 33445677777777644
Q ss_pred cCCC
Q 026479 218 SNSS 221 (238)
Q Consensus 218 ~~~~ 221 (238)
...+
T Consensus 568 ~~e~ 571 (1528)
T PF05088_consen 568 RAEN 571 (1528)
T ss_pred CCCC
Confidence 4443
No 117
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=77.38 E-value=16 Score=33.99 Aligned_cols=64 Identities=13% Similarity=0.105 Sum_probs=45.7
Q ss_pred eEEEEEEEeCCCCCcHHHHHHHHHhcCCceEEEEEee-----cCCEEEEEEEEeecCCCChhhHHHHHHHHH
Q 026479 146 LIFKASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVT-----LGGRIRNVLIIAAEKDHSIESVHFLQNALK 212 (238)
Q Consensus 146 ~~v~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist-----~g~rv~~~f~V~~~~~~~~~~~~~L~~aL~ 212 (238)
..+.+.+.-+++||.|.++++.+.+.|.+|++..... -.+.+.-.+.++..+ .+..+.|.++|.
T Consensus 304 r~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~~---~~~~~~i~~~L~ 372 (380)
T TIGR01127 304 RKVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETRG---KEHLDEILKILR 372 (380)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeCC---HHHHHHHHHHHH
Confidence 4577888899999999999999999999998875441 125555666665542 334445555554
No 118
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=77.22 E-value=15 Score=25.09 Aligned_cols=28 Identities=14% Similarity=0.259 Sum_probs=23.4
Q ss_pred EEEEEeC---CCCCcHHHHHHHHHhcCCceE
Q 026479 149 KASLCCE---DRSDLLPDIIEILKSLHLKTL 176 (238)
Q Consensus 149 ~I~i~c~---~r~GlL~~Il~aLe~lgL~V~ 176 (238)
.|.+.+. ..+|++.+++.+|.+.|+.|.
T Consensus 3 ~isvvG~~~~~~~gi~~~if~aL~~~~I~v~ 33 (64)
T cd04937 3 KVTIIGSRIRGVPGVMAKIVGALSKEGIEIL 33 (64)
T ss_pred EEEEECCCccCCcCHHHHHHHHHHHCCCCEE
Confidence 3555554 579999999999999999996
No 119
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=77.18 E-value=13 Score=24.09 Aligned_cols=44 Identities=7% Similarity=0.122 Sum_probs=30.4
Q ss_pred EEEEeC---CCCCcHHHHHHHHHhcCCceEEEEEeecCCEEEEEEEEee
Q 026479 150 ASLCCE---DRSDLLPDIIEILKSLHLKTLKSEMVTLGGRIRNVLIIAA 195 (238)
Q Consensus 150 I~i~c~---~r~GlL~~Il~aLe~lgL~V~~A~Ist~g~rv~~~f~V~~ 195 (238)
|++.+. +.+|++.+++++|.+.++.+.....+. .+ ..-+|.+..
T Consensus 3 i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i~~~~-~~-~~i~~~v~~ 49 (65)
T cd04892 3 VSVVGAGMRGTPGVAARIFSALAEAGINIIMISQGS-SE-VNISFVVDE 49 (65)
T ss_pred EEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEcCC-Cc-eeEEEEEeH
Confidence 555443 578999999999999999998776543 22 333455544
No 120
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=75.00 E-value=8.2 Score=31.08 Aligned_cols=45 Identities=13% Similarity=0.146 Sum_probs=38.3
Q ss_pred EEEEEeCCCCCcHHHHHHHHHhcCCceEEEEEeecCCEEEEEEEE
Q 026479 149 KASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVTLGGRIRNVLII 193 (238)
Q Consensus 149 ~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~g~rv~~~f~V 193 (238)
+|++..+++||-|..++++|.+.|+.|..-.|.-.|++-.--.+|
T Consensus 5 QISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRmvV 49 (142)
T COG4747 5 QISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRMVV 49 (142)
T ss_pred EEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEEEc
Confidence 688999999999999999999999999999998887764444444
No 121
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=74.43 E-value=22 Score=33.78 Aligned_cols=61 Identities=20% Similarity=0.239 Sum_probs=45.6
Q ss_pred EeCCCCCcHHHHHHHHHhcCCceEEEEEeecCC-EEEEEEEEeecCCCChhhHHHHHHHHHHHHh
Q 026479 153 CCEDRSDLLPDIIEILKSLHLKTLKSEMVTLGG-RIRNVLIIAAEKDHSIESVHFLQNALKSLLE 216 (238)
Q Consensus 153 ~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~g~-rv~~~f~V~~~~~~~~~~~~~L~~aL~~vl~ 216 (238)
.-+++||.|.+++.+|...|++...-..-...+ ...+.|+|........ ..++++|..+-.
T Consensus 303 ~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid~eg~~~d---~~~~~aL~~l~~ 364 (386)
T PRK10622 303 ATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLDVQANLRS---AEMQKALKELGE 364 (386)
T ss_pred EcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEEEeCCCCC---HHHHHHHHHHHH
Confidence 346899999999999999999999888775554 5889999988764222 245666555533
No 122
>PLN02317 arogenate dehydratase
Probab=74.12 E-value=21 Score=34.00 Aligned_cols=45 Identities=13% Similarity=0.149 Sum_probs=37.3
Q ss_pred eCCCCCcHHHHHHHHHhcCCceEEEEEeecCCE---------------EEEEEEEeecCC
Q 026479 154 CEDRSDLLPDIIEILKSLHLKTLKSEMVTLGGR---------------IRNVLIIAAEKD 198 (238)
Q Consensus 154 c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~g~r---------------v~~~f~V~~~~~ 198 (238)
-+++||.|.+++.+|...|+++.+-..-....+ +.+.|+|.-+..
T Consensus 290 l~~~pG~L~k~L~~Fa~~~INLtkIESRP~~~~~~~~~~~~~~~~~~~~eY~FyVD~eg~ 349 (382)
T PLN02317 290 LEEGPGVLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNSGTAKYFDYLFYVDFEAS 349 (382)
T ss_pred cCCCCchHHHHHHHHHHCCCCEEEEEeeecCCCCccccccccccccccccEEEEEEEEcC
Confidence 367899999999999999999999887665444 678999987754
No 123
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=73.71 E-value=19 Score=26.92 Aligned_cols=63 Identities=16% Similarity=0.315 Sum_probs=49.1
Q ss_pred EEEEEEeCCCCCcHHHHHHHHHhcCCceEEEEEeec--CCEEEEEEEEeecCCCChhhHHHHHHHHHHHH
Q 026479 148 FKASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVTL--GGRIRNVLIIAAEKDHSIESVHFLQNALKSLL 215 (238)
Q Consensus 148 v~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~--g~rv~~~f~V~~~~~~~~~~~~~L~~aL~~vl 215 (238)
..+.|....+|+.|-+++.+.+.-|+.|-..++++. ++.+---|+|... ...+-|...|.++.
T Consensus 4 yqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV~s~-----R~~~lL~~QLeKl~ 68 (86)
T COG3978 4 YQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTVDSD-----RSVDLLTSQLEKLY 68 (86)
T ss_pred EEEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEEcCC-----CChHHHHHHHHHHc
Confidence 567788899999999999999999999999999887 6777666777443 24455666665554
No 124
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=73.22 E-value=23 Score=32.31 Aligned_cols=61 Identities=16% Similarity=0.188 Sum_probs=46.3
Q ss_pred EEeCCCCCcHHHHHHHHHhcCCceEEEEEeecC-CEEEEEEEEeecCCCChhhHHHHHHHHHHHH
Q 026479 152 LCCEDRSDLLPDIIEILKSLHLKTLKSEMVTLG-GRIRNVLIIAAEKDHSIESVHFLQNALKSLL 215 (238)
Q Consensus 152 i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~g-~rv~~~f~V~~~~~~~~~~~~~L~~aL~~vl 215 (238)
+..+++||.|.+++..|...|++...-..-... +.+.+.|+|..+..... ..+++||.++-
T Consensus 199 f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~eg~~~~---~~v~~AL~el~ 260 (279)
T COG0077 199 FSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDIEGHIDD---PLVKEALEELK 260 (279)
T ss_pred EEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEEecCcCc---HhHHHHHHHHH
Confidence 345699999999999999999999988876665 56888999987764322 35566665543
No 125
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=73.18 E-value=21 Score=23.98 Aligned_cols=38 Identities=8% Similarity=0.029 Sum_probs=27.1
Q ss_pred CCCCcHHHHHHHHHhcCCceEEEEEeecCCEEEEEEEEee
Q 026479 156 DRSDLLPDIIEILKSLHLKTLKSEMVTLGGRIRNVLIIAA 195 (238)
Q Consensus 156 ~r~GlL~~Il~aLe~lgL~V~~A~Ist~g~rv~~~f~V~~ 195 (238)
+++|++.+++++|.+.|++|.-..-++ .+ ..-.|.+..
T Consensus 13 ~~~~~~~~if~~L~~~~I~v~~i~q~~-s~-~~isf~v~~ 50 (66)
T cd04919 13 NMIGIAGRMFTTLADHRINIEMISQGA-SE-INISCVIDE 50 (66)
T ss_pred CCcCHHHHHHHHHHHCCCCEEEEEecC-cc-ceEEEEEeH
Confidence 478999999999999999997665544 22 223445543
No 126
>PRK11898 prephenate dehydratase; Provisional
Probab=72.66 E-value=21 Score=32.29 Aligned_cols=47 Identities=13% Similarity=0.033 Sum_probs=37.9
Q ss_pred EEeCC-CCCcHHHHHHHHHhcCCceEEEEEeecC-CEEEEEEEEeecCC
Q 026479 152 LCCED-RSDLLPDIIEILKSLHLKTLKSEMVTLG-GRIRNVLIIAAEKD 198 (238)
Q Consensus 152 i~c~~-r~GlL~~Il~aLe~lgL~V~~A~Ist~g-~rv~~~f~V~~~~~ 198 (238)
+...+ +||.|.+++..|...|+.+++-..-... ....+.|+|.....
T Consensus 201 f~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~vd~eg~ 249 (283)
T PRK11898 201 LTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFIDVEGH 249 (283)
T ss_pred EEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEEEEEcc
Confidence 44444 5999999999999999999999877654 44678999987754
No 127
>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=72.58 E-value=9.1 Score=28.20 Aligned_cols=44 Identities=25% Similarity=0.308 Sum_probs=35.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHhcCCceEEEEEee--cCCEEEEEEEE
Q 026479 150 ASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVT--LGGRIRNVLII 193 (238)
Q Consensus 150 I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist--~g~rv~~~f~V 193 (238)
|+++..-||-++.++.-||+.|++-|.+|.|.- .+++--.++.+
T Consensus 3 VElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~ 48 (77)
T cd04898 3 VELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRV 48 (77)
T ss_pred ccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEE
Confidence 567777899999999999999999999999954 44554444444
No 128
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=70.19 E-value=26 Score=35.97 Aligned_cols=43 Identities=19% Similarity=0.238 Sum_probs=37.4
Q ss_pred ceEEEEEEEeCCCCCcHHHHHHHHHhcCCceEEEEEeecCCEE
Q 026479 145 TLIFKASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVTLGGRI 187 (238)
Q Consensus 145 ~~~v~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~g~rv 187 (238)
...+.|.|...+|+|+|.+|+++|-+.+..|...++.+.++.+
T Consensus 625 ~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~ 667 (701)
T COG0317 625 VYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQF 667 (701)
T ss_pred ceEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCce
Confidence 4567788999999999999999999999999999988865443
No 129
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=69.95 E-value=39 Score=24.50 Aligned_cols=60 Identities=10% Similarity=0.066 Sum_probs=36.1
Q ss_pred EEEEEeCCCCCcHHHHHHHHHhcCCceEEEEEeecC-CEEEEEEEEeecCCCChhhHHHHHHHHH
Q 026479 149 KASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVTLG-GRIRNVLIIAAEKDHSIESVHFLQNALK 212 (238)
Q Consensus 149 ~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~g-~rv~~~f~V~~~~~~~~~~~~~L~~aL~ 212 (238)
.+.+.-+++||-|.+++++|- +-+|........+ +...-.+.++..++ .+..+.+.++|.
T Consensus 3 vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~~~~--~~~~~~i~~~L~ 63 (85)
T cd04906 3 LLAVTIPERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSVANG--AEELAELLEDLK 63 (85)
T ss_pred EEEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEeCCc--HHHHHHHHHHHH
Confidence 355677999999999999999 5555544433322 34444455555431 234455555554
No 130
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=69.14 E-value=20 Score=30.43 Aligned_cols=69 Identities=12% Similarity=0.106 Sum_probs=44.6
Q ss_pred eEEEEEEEeCCCCCcHHHHHHHHHhcCCceEEEEEee--cCCEEEEEEEEeecCC-CChhhHHHHHHHHHHH
Q 026479 146 LIFKASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVT--LGGRIRNVLIIAAEKD-HSIESVHFLQNALKSL 214 (238)
Q Consensus 146 ~~v~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist--~g~rv~~~f~V~~~~~-~~~~~~~~L~~aL~~v 214 (238)
..+.+++...||||++.++++.|..+|+.|.+-.-.+ ..+.--.-|++...-. -..-....|+++|.++
T Consensus 91 ~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~~~lfha~it~~lPa~~~i~~l~~~f~al 162 (176)
T COG2716 91 APVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSSAPLFHAQITARLPANLSISALRDAFEAL 162 (176)
T ss_pred ceEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCCCccceehhhhccCCCcCcHHHHHHHHHHH
Confidence 5688999999999999999999999999886655333 2233333444433221 1123445677666544
No 131
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=67.84 E-value=31 Score=22.90 Aligned_cols=45 Identities=7% Similarity=-0.038 Sum_probs=30.5
Q ss_pred EEEEEeC---CCCCcHHHHHHHHHhcCCceEEEEEeecCCEEEEEEEEee
Q 026479 149 KASLCCE---DRSDLLPDIIEILKSLHLKTLKSEMVTLGGRIRNVLIIAA 195 (238)
Q Consensus 149 ~I~i~c~---~r~GlL~~Il~aLe~lgL~V~~A~Ist~g~rv~~~f~V~~ 195 (238)
.|.+.+. +.+|++.+++.+|.+.|+++.-...+.- + .--+|.+..
T Consensus 3 lisivg~~~~~~~~~~~~i~~~L~~~~i~v~~i~~~~s-~-~~isf~v~~ 50 (66)
T cd04916 3 LIMVVGEGMKNTVGVSARATAALAKAGINIRMINQGSS-E-ISIMIGVHN 50 (66)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCCEEEEEecCc-c-cEEEEEEeH
Confidence 3555553 5789999999999999999976665432 2 223355543
No 132
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=67.58 E-value=43 Score=23.98 Aligned_cols=57 Identities=18% Similarity=0.162 Sum_probs=35.8
Q ss_pred eCCCCCcHHHHHHHHHhcCCceEEEEEeecCCEEEEEEEEeecCCCChhhHHHHHHHHHHHHhh
Q 026479 154 CEDRSDLLPDIIEILKSLHLKTLKSEMVTLGGRIRNVLIIAAEKDHSIESVHFLQNALKSLLER 217 (238)
Q Consensus 154 c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~g~rv~~~f~V~~~~~~~~~~~~~L~~aL~~vl~~ 217 (238)
..+.+|++.+|+++|.+.|+.|-.-.. ++ .--.|.|...+.... +.|+.+|.+-|++
T Consensus 11 ~~~~~g~~~~IF~~La~~~I~VDmI~~---s~-~~iSftv~~~d~~~~---~~~~~~l~~~l~~ 67 (75)
T cd04932 11 MLHAQGFLAKVFGILAKHNISVDLITT---SE-ISVALTLDNTGSTSD---QLLTQALLKELSQ 67 (75)
T ss_pred CCCCcCHHHHHHHHHHHcCCcEEEEee---cC-CEEEEEEeccccchh---HHHHHHHHHHHHh
Confidence 456799999999999999999887643 22 345566654432211 2344455544443
No 133
>PRK14637 hypothetical protein; Provisional
Probab=62.41 E-value=54 Score=27.00 Aligned_cols=62 Identities=11% Similarity=0.082 Sum_probs=46.0
Q ss_pred CCCCcHHHHHHHHHhcCCceEEEEEeecCCEEEEEEEEeecCCCChhhHHHHHHHHHHHHhh
Q 026479 156 DRSDLLPDIIEILKSLHLKTLKSEMVTLGGRIRNVLIIAAEKDHSIESVHFLQNALKSLLER 217 (238)
Q Consensus 156 ~r~GlL~~Il~aLe~lgL~V~~A~Ist~g~rv~~~f~V~~~~~~~~~~~~~L~~aL~~vl~~ 217 (238)
+.-|....+-.+++++|+++.+..+..-++...-.++|...++-..+.+..+.+++..+|+.
T Consensus 6 ~~~~~~~~v~p~~~~~g~eLvdve~~~~~~~~~lrV~ID~~~gV~iddC~~vSr~Is~~LD~ 67 (151)
T PRK14637 6 KDLGYFSECEPVVEGLGCKLVDLSRRVQQAQGRVRAVIYSAGGVGLDDCARVHRILVPRLEA 67 (151)
T ss_pred ccccHHHHHHHHHHhcCCEEEEEEEEecCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHhcc
Confidence 44678888889999999999999998877654444455444333467788888988877753
No 134
>PRK08526 threonine dehydratase; Provisional
Probab=62.18 E-value=62 Score=30.73 Aligned_cols=64 Identities=14% Similarity=0.150 Sum_probs=46.0
Q ss_pred eEEEEEEEeCCCCCcHHHHHHHHHhcCCceEEEEEeecCC-----EEEEEEEEeecCCCChhhHHHHHHHHH
Q 026479 146 LIFKASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVTLGG-----RIRNVLIIAAEKDHSIESVHFLQNALK 212 (238)
Q Consensus 146 ~~v~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~g~-----rv~~~f~V~~~~~~~~~~~~~L~~aL~ 212 (238)
..+.+.+.-+++||-|.+++..+-+.+.+|+...-..... .+.-.+.++..+ .+..+.|..+|.
T Consensus 325 r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~~~~e~~~---~~~~~~~~~~l~ 393 (403)
T PRK08526 325 RKMKLHVTLVDKPGALMGLTDILKEANANIVKIDYDRFSTKLDYGDAMISITLETKG---KEHQEEIRKILT 393 (403)
T ss_pred CEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEEeccCCCCCccEEEEEEEEeCC---HHHHHHHHHHHH
Confidence 4577888899999999999999999999999887654332 344445554442 455556666654
No 135
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=60.45 E-value=46 Score=21.97 Aligned_cols=45 Identities=4% Similarity=0.044 Sum_probs=30.4
Q ss_pred EEEEEeC---CCCCcHHHHHHHHHhcCCceEEEEEeecCCEEEEEEEEee
Q 026479 149 KASLCCE---DRSDLLPDIIEILKSLHLKTLKSEMVTLGGRIRNVLIIAA 195 (238)
Q Consensus 149 ~I~i~c~---~r~GlL~~Il~aLe~lgL~V~~A~Ist~g~rv~~~f~V~~ 195 (238)
.|.+.+. +.++++.+++++|.+.|+.|.-...+.. + ..-.|.+..
T Consensus 3 ~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~q~~s-~-~~isf~i~~ 50 (66)
T cd04924 3 VVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQGSS-E-YNISFVVAE 50 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCc-c-ceEEEEEeH
Confidence 3455543 5689999999999999999976655442 2 223466644
No 136
>PRK14639 hypothetical protein; Provisional
Probab=56.80 E-value=60 Score=26.36 Aligned_cols=55 Identities=16% Similarity=0.238 Sum_probs=41.4
Q ss_pred HHHHHHhcCCceEEEEEeecCCEEEEEEEEeecCCCChhhHHHHHHHHHHHHhhc
Q 026479 164 IIEILKSLHLKTLKSEMVTLGGRIRNVLIIAAEKDHSIESVHFLQNALKSLLERS 218 (238)
Q Consensus 164 Il~aLe~lgL~V~~A~Ist~g~rv~~~f~V~~~~~~~~~~~~~L~~aL~~vl~~~ 218 (238)
+-.+++++|+++....+..-++...-.+++...++-+.+.+..+.+++.++|+..
T Consensus 3 ~ep~~~~~G~eLvdve~~~~~~~~~lrV~Id~~~gv~iddC~~vSr~is~~LD~~ 57 (140)
T PRK14639 3 LEALCKECGVSFYDDELVSENGRKIYRVYITKEGGVNLDDCERLSELLSPIFDVE 57 (140)
T ss_pred hhHhHHhCCCEEEEEEEEecCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHHhccc
Confidence 4467899999999999998877655556665444444678889999999888643
No 137
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=56.54 E-value=45 Score=28.50 Aligned_cols=48 Identities=13% Similarity=0.152 Sum_probs=36.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHhcCCceEEEEEeecCCEEEEEEEEeecC
Q 026479 150 ASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVTLGGRIRNVLIIAAEK 197 (238)
Q Consensus 150 I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~g~rv~~~f~V~~~~ 197 (238)
++|..+.+||.|.++.-.+.+.|-+|+.|.--..++--...+|.+.++
T Consensus 5 lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEiEg 52 (218)
T COG1707 5 LSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEIEG 52 (218)
T ss_pred eEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEeeC
Confidence 678899999999999999999999999998544333223445555444
No 138
>PRK00907 hypothetical protein; Provisional
Probab=56.48 E-value=61 Score=24.57 Aligned_cols=63 Identities=19% Similarity=0.203 Sum_probs=43.1
Q ss_pred EEEEEEeCCCCCcHHHHHHHHHhcCCceEEE----EEeecCCEEEEEEEEeecCCCChhhHHHHHHHHHH
Q 026479 148 FKASLCCEDRSDLLPDIIEILKSLHLKTLKS----EMVTLGGRIRNVLIIAAEKDHSIESVHFLQNALKS 213 (238)
Q Consensus 148 v~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A----~Ist~g~rv~~~f~V~~~~~~~~~~~~~L~~aL~~ 213 (238)
+-++|-...++++...|+++++.+.-+.-.. +-|.-|...--++.|.+. +.+.++.|-++|.+
T Consensus 18 fpiKVmG~a~~~l~~~V~~vv~~h~p~~~~~~i~~r~Ss~GkY~Svtv~i~at---s~eQld~iY~~L~~ 84 (92)
T PRK00907 18 FELSAMGTAERGLETELPRLLAATGVELLQERISWKHSSSGKYVSVRIGFRAE---SREQYDAAHQALRD 84 (92)
T ss_pred CeEEEEEcCchhHHHHHHHHHHHhCCCCCcCcEEeccCCCCEEEEEEEEEEEC---CHHHHHHHHHHHhh
Confidence 6788899999999999999999885433333 335555554445555444 25677777777753
No 139
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=54.70 E-value=36 Score=23.56 Aligned_cols=32 Identities=16% Similarity=0.146 Sum_probs=26.0
Q ss_pred EEEEEEeC----CCCCcHHHHHHHHHhcCCceEEEE
Q 026479 148 FKASLCCE----DRSDLLPDIIEILKSLHLKTLKSE 179 (238)
Q Consensus 148 v~I~i~c~----~r~GlL~~Il~aLe~lgL~V~~A~ 179 (238)
..|+|.+. +.+|++.++..+|.+.|+.|....
T Consensus 7 ~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is 42 (65)
T PF13840_consen 7 AKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS 42 (65)
T ss_dssp EEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE
T ss_pred EEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE
Confidence 45666665 589999999999999999998776
No 140
>PF09383 NIL: NIL domain; InterPro: IPR018449 This domain is found at the C terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins. This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family. ; PDB: 2QRR_A 3CED_A 2QSW_A 3TUZ_D 3TUJ_D 3DHX_B 3TUI_H 3DHW_D.
Probab=53.81 E-value=75 Score=22.32 Aligned_cols=52 Identities=8% Similarity=0.130 Sum_probs=36.2
Q ss_pred eEEEEEEEeCCCCCcHHHHHHHHHhcCCceEEEEEeecCCEEEEEEEEeecC
Q 026479 146 LIFKASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVTLGGRIRNVLIIAAEK 197 (238)
Q Consensus 146 ~~v~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~g~rv~~~f~V~~~~ 197 (238)
..+.+.+..+.....+..=+..=-...++|++++|..+++..+..+++.-.+
T Consensus 3 ~l~~l~f~g~~~~~piis~l~~~~~v~~nIl~g~i~~i~~~~~G~l~l~l~g 54 (76)
T PF09383_consen 3 RLVRLTFTGNSAQEPIISQLIREFGVDVNILHGNIEEIQGTPFGILILELPG 54 (76)
T ss_dssp EEEEEEEESCSSSSCHHHHHHHHHT-EEEEEEEEEEEETTEEEEEEEEEEES
T ss_pred eEEEEEEcCCCcCchHHHHHHHHhCCCEEEEEEEeEEcCCeeEEEEEEEEEC
Confidence 3456666665544444333333345678899999999999999999998874
No 141
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=53.42 E-value=9.9 Score=31.73 Aligned_cols=45 Identities=16% Similarity=0.175 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCC--CCChhhHHHHHHHHHHHHHHH
Q 026479 71 AEKRRRERINSHLNKLRSILSCNS--KLDKASLLARVVQRVRELKEQ 115 (238)
Q Consensus 71 ~ER~RR~~in~~~~~Lr~lvP~~~--k~dK~siL~~ai~yik~Lq~~ 115 (238)
.||.|-.++|+.+.-|+.|+|+.. ++.+--.|.-+-+||.+|.+-
T Consensus 29 ~e~~R~~~ls~~s~l~g~l~pgspa~gk~~~ktlr~~~~~~~~~dE~ 75 (173)
T KOG4447|consen 29 KERGRKRRLSDASTLLGKLEPGSPADGKRGKKTLRIGTDSIQSLDEL 75 (173)
T ss_pred HHHhHHhhhhhhhhhccccCCCCCCcccccccccccCCCchhhHHHH
Confidence 688888899999999999999653 333333365566666555443
No 142
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=53.42 E-value=66 Score=31.19 Aligned_cols=46 Identities=4% Similarity=0.112 Sum_probs=37.1
Q ss_pred EEeCCCCCcHHHHHHHHHhcCCceEEEEEeecC-CEEEEEEEEeecC
Q 026479 152 LCCEDRSDLLPDIIEILKSLHLKTLKSEMVTLG-GRIRNVLIIAAEK 197 (238)
Q Consensus 152 i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~g-~rv~~~f~V~~~~ 197 (238)
+...+++|-|.+++.+|+..|+++.+-..-... ....+.|+|....
T Consensus 21 FsL~d~pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFVD~eg 67 (436)
T TIGR01268 21 FSLKEEAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFVEFDE 67 (436)
T ss_pred EEcCCCCcHHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEEEEec
Confidence 344778999999999999999999998875543 4456789998764
No 143
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=53.42 E-value=51 Score=21.86 Aligned_cols=38 Identities=18% Similarity=0.158 Sum_probs=27.4
Q ss_pred CCCCCcHHHHHHHHHhcCCceEEEEEeecCCEEEEEEEEeec
Q 026479 155 EDRSDLLPDIIEILKSLHLKTLKSEMVTLGGRIRNVLIIAAE 196 (238)
Q Consensus 155 ~~r~GlL~~Il~aLe~lgL~V~~A~Ist~g~rv~~~f~V~~~ 196 (238)
..++|+..+|+++|++.|+.|.... + +. ..-+|++...
T Consensus 11 ~~~~~~~~~if~~l~~~~i~v~~i~--t-~~-~~is~~v~~~ 48 (62)
T cd04890 11 NGEVGFLRKIFEILEKHGISVDLIP--T-SE-NSVTLYLDDS 48 (62)
T ss_pred CcccCHHHHHHHHHHHcCCeEEEEe--c-CC-CEEEEEEehh
Confidence 3568999999999999999988773 2 22 3345555443
No 144
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=52.40 E-value=83 Score=22.40 Aligned_cols=56 Identities=9% Similarity=0.099 Sum_probs=35.8
Q ss_pred eCCCCCcHHHHHHHHHhcCCceEEEEEeecCCEEEEEEEEeecCC-CChhhHHHHHHHHHH
Q 026479 154 CEDRSDLLPDIIEILKSLHLKTLKSEMVTLGGRIRNVLIIAAEKD-HSIESVHFLQNALKS 213 (238)
Q Consensus 154 c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~g~rv~~~f~V~~~~~-~~~~~~~~L~~aL~~ 213 (238)
..+.+|++.+|+++|.+.|+.|-.-.. +. .--.|.|..... -..+.++.|.+.|.+
T Consensus 11 ~~~~~g~~~~IF~~La~~~I~vDmI~~---s~-~~isftv~~~~~~~~~~~~~~l~~el~~ 67 (75)
T cd04935 11 MWQQVGFLADVFAPFKKHGVSVDLVST---SE-TNVTVSLDPDPNGLDPDVLDALLDDLNQ 67 (75)
T ss_pred CCCccCHHHHHHHHHHHcCCcEEEEEe---CC-CEEEEEEeCcccccchHHHHHHHHHHHh
Confidence 355799999999999999999887743 22 334566654431 112245556555554
No 145
>PRK14647 hypothetical protein; Provisional
Probab=52.38 E-value=87 Score=25.88 Aligned_cols=56 Identities=20% Similarity=0.220 Sum_probs=40.0
Q ss_pred HHHHHHHhcCCceEEEEEeecCCEEEEEEEEeecCCCChhhHHHHHHHHHHHHhhc
Q 026479 163 DIIEILKSLHLKTLKSEMVTLGGRIRNVLIIAAEKDHSIESVHFLQNALKSLLERS 218 (238)
Q Consensus 163 ~Il~aLe~lgL~V~~A~Ist~g~rv~~~f~V~~~~~~~~~~~~~L~~aL~~vl~~~ 218 (238)
-+-.+++++|+++....+..-++...-.+++...++-+.+.+..+.+++..+|+..
T Consensus 13 ~i~~~~~~~G~~L~dv~~~~~~~~~~lrV~ID~~~gvslddC~~vSr~is~~LD~~ 68 (159)
T PRK14647 13 LAEQVLSSLGLELVELEYKREGREMVLRLFIDKEGGVNLDDCAEVSRELSEILDVE 68 (159)
T ss_pred HHHHHHHHCCCEEEEEEEEecCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHHHccc
Confidence 34556789999999999988776544444554444444678889999999888643
No 146
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=52.24 E-value=25 Score=34.49 Aligned_cols=35 Identities=20% Similarity=0.397 Sum_probs=32.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHHhcCCceEEEEEeec
Q 026479 149 KASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVTL 183 (238)
Q Consensus 149 ~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~ 183 (238)
.++|.|.||-|+..+|+..|...++++....|...
T Consensus 2 rl~~~~~dr~g~~~~~l~~~~~~~~~~~~~e~~~~ 36 (520)
T PRK10820 2 RLEVFCEDRLGLTRELLDLLVLRSIDLRGIEIDPI 36 (520)
T ss_pred eEEEEeeccccHHHHHHHHHHhcCCCccEEEEcCC
Confidence 47899999999999999999999999999999776
No 147
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=52.10 E-value=46 Score=22.71 Aligned_cols=28 Identities=11% Similarity=-0.003 Sum_probs=23.3
Q ss_pred CCCCcHHHHHHHHHhcCCceEEEEEeec
Q 026479 156 DRSDLLPDIIEILKSLHLKTLKSEMVTL 183 (238)
Q Consensus 156 ~r~GlL~~Il~aLe~lgL~V~~A~Ist~ 183 (238)
+.+|++.+++.+|.+.|+.|.-...++.
T Consensus 12 ~~~~~~~~i~~aL~~~~I~v~~i~~g~s 39 (65)
T cd04918 12 RSSLILERAFHVLYTKGVNVQMISQGAS 39 (65)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEEecCc
Confidence 3589999999999999999977665553
No 148
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=51.83 E-value=62 Score=20.97 Aligned_cols=24 Identities=4% Similarity=0.076 Sum_probs=21.3
Q ss_pred CCCCcHHHHHHHHHhcCCceEEEE
Q 026479 156 DRSDLLPDIIEILKSLHLKTLKSE 179 (238)
Q Consensus 156 ~r~GlL~~Il~aLe~lgL~V~~A~ 179 (238)
+.+|++.+++.+|.+.++.+....
T Consensus 12 ~~~~~~~~i~~~L~~~~i~v~~i~ 35 (63)
T cd04923 12 SHPGVAAKMFKALAEAGINIEMIS 35 (63)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEE
Confidence 468999999999999999997765
No 149
>PRK00092 ribosome maturation protein RimP; Reviewed
Probab=51.60 E-value=82 Score=25.72 Aligned_cols=56 Identities=14% Similarity=0.191 Sum_probs=40.5
Q ss_pred HHHHHHHhcCCceEEEEEeecCCEEEEEEEEeecCCCChhhHHHHHHHHHHHHhhc
Q 026479 163 DIIEILKSLHLKTLKSEMVTLGGRIRNVLIIAAEKDHSIESVHFLQNALKSLLERS 218 (238)
Q Consensus 163 ~Il~aLe~lgL~V~~A~Ist~g~rv~~~f~V~~~~~~~~~~~~~L~~aL~~vl~~~ 218 (238)
-+-.+++++|+++....+..-++...-.++|...++-+.+.+..+.+++..+|+..
T Consensus 12 ~~~~~~~~~g~~l~dv~~~~~~~~~~l~V~Id~~~gv~iddc~~~Sr~is~~LD~~ 67 (154)
T PRK00092 12 LIEPVVEALGYELVDVEYVKEGRDSTLRIYIDKEGGIDLDDCEEVSRQISAVLDVE 67 (154)
T ss_pred HHHHHHHHCCCEEEEEEEEecCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHhccc
Confidence 34566788999999999988766544455555444445678889999999888643
No 150
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=51.18 E-value=21 Score=26.19 Aligned_cols=62 Identities=16% Similarity=0.246 Sum_probs=41.0
Q ss_pred EEEEeCC-CCCcHHHHHHHHHhcCCceEEEEEeecCCEE---------EEEEEEeecCCCChhhHHHHHHHHHHHH
Q 026479 150 ASLCCED-RSDLLPDIIEILKSLHLKTLKSEMVTLGGRI---------RNVLIIAAEKDHSIESVHFLQNALKSLL 215 (238)
Q Consensus 150 I~i~c~~-r~GlL~~Il~aLe~lgL~V~~A~Ist~g~rv---------~~~f~V~~~~~~~~~~~~~L~~aL~~vl 215 (238)
|.+-..+ +.|.+..|..+|.++|++|.+.+= ..+++ ..++.+..... +.....|+.+|.++-
T Consensus 2 vtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~--l~~~~~~~~~~~~~~~~~e~~v~~~--~~~~~~lr~~L~~la 73 (84)
T cd04871 2 VTLLGRPLTAEQLAAVTRVVADQGLNIDRIRR--LSGRVPLEEQDDSPKACVEFSVRGQ--PADLEALRAALLELA 73 (84)
T ss_pred EEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHH--hhccccccccCCCCcEEEEEEEeCC--CCCHHHHHHHHHHHh
Confidence 4566777 899999999999999999986653 33332 23344433322 245667888777543
No 151
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=51.00 E-value=98 Score=34.77 Aligned_cols=72 Identities=17% Similarity=0.192 Sum_probs=50.6
Q ss_pred EEEEEEEeCCCCCcHHHHHHHHHhcCCceEEEE--Eeec-----------------CCEEEEEEEEeecCCCChhhHHHH
Q 026479 147 IFKASLCCEDRSDLLPDIIEILKSLHLKTLKSE--MVTL-----------------GGRIRNVLIIAAEKDHSIESVHFL 207 (238)
Q Consensus 147 ~v~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~--Ist~-----------------g~rv~~~f~V~~~~~~~~~~~~~L 207 (238)
...|.|.|+|.|-|.-.|..+|...|+.|...- |-.+ ++.....+++.......++..+.|
T Consensus 17 ~TvI~IV~dDmPFLVDSV~~~L~r~gl~I~~i~HPVl~V~RD~~G~L~~v~~~~~~~~~~ES~I~ieId~~~d~~~~~~L 96 (1528)
T PF05088_consen 17 HTVIEIVTDDMPFLVDSVRMELNRQGLTIHLIIHPVLNVERDADGKLVAVGPADDSGGTRESWIHIEIDRQSDPEELEAL 96 (1528)
T ss_pred CeEEEEEcCCCCcHHHHHHHHHHhCCCceEEEecCcEEEEECCCCcEEEecCCCCCCCceEEEEEEEEcCCCCHHHHHHH
Confidence 357889999999999999999999999987643 1111 234445556655543345677778
Q ss_pred HHHHHHHHhhc
Q 026479 208 QNALKSLLERS 218 (238)
Q Consensus 208 ~~aL~~vl~~~ 218 (238)
++.|..+|+.-
T Consensus 97 ~~~L~~VL~dV 107 (1528)
T PF05088_consen 97 REDLERVLEDV 107 (1528)
T ss_pred HHHHHHHHHHH
Confidence 88887777443
No 152
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=50.83 E-value=82 Score=21.88 Aligned_cols=63 Identities=5% Similarity=0.043 Sum_probs=37.9
Q ss_pred EEEEEe---CCCCCcHHHHHHHHHhcCCceEEEEEeecCCEEEEEEEEeecCCCChhhHHHHHHHHHHHH
Q 026479 149 KASLCC---EDRSDLLPDIIEILKSLHLKTLKSEMVTLGGRIRNVLIIAAEKDHSIESVHFLQNALKSLL 215 (238)
Q Consensus 149 ~I~i~c---~~r~GlL~~Il~aLe~lgL~V~~A~Ist~g~rv~~~f~V~~~~~~~~~~~~~L~~aL~~vl 215 (238)
.|++.+ .+.+|++.+++++|.+.++.+.....++.+ .--.|.+...+ .......|+++|..-+
T Consensus 3 ~I~vvg~~~~~~~~~~~~i~~~L~~~~I~v~~i~~~~~~--~~isf~v~~~d--~~~~~~~l~~~~~~~~ 68 (80)
T cd04921 3 LINIEGTGMVGVPGIAARIFSALARAGINVILISQASSE--HSISFVVDESD--ADKALEALEEEFALEI 68 (80)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCc--ceEEEEEeHHH--HHHHHHHHHHHHHhhh
Confidence 355532 357899999999999999999766654322 22345554432 1223445555554333
No 153
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=50.53 E-value=95 Score=22.54 Aligned_cols=38 Identities=11% Similarity=0.178 Sum_probs=28.2
Q ss_pred CCCCCcHHHHHHHHHhcCCceEEEEEeecCCEEEEEEEEeec
Q 026479 155 EDRSDLLPDIIEILKSLHLKTLKSEMVTLGGRIRNVLIIAAE 196 (238)
Q Consensus 155 ~~r~GlL~~Il~aLe~lgL~V~~A~Ist~g~rv~~~f~V~~~ 196 (238)
.+.+|++.+|+++|.+.|+.|-.... ++ .--.|.+...
T Consensus 12 ~~~~g~~a~IF~~La~~~InVDmI~q---s~-~sISftV~~s 49 (78)
T cd04933 12 LGQYGFLAKVFSIFETLGISVDVVAT---SE-VSISLTLDPS 49 (78)
T ss_pred CCccCHHHHHHHHHHHcCCcEEEEEe---cC-CEEEEEEEhh
Confidence 55799999999999999999887743 23 3355666544
No 154
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=50.47 E-value=65 Score=31.49 Aligned_cols=48 Identities=15% Similarity=0.145 Sum_probs=37.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHhcCCceEEEEEeecCC-EEE-EEEEEeecC
Q 026479 150 ASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVTLGG-RIR-NVLIIAAEK 197 (238)
Q Consensus 150 I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~g~-rv~-~~f~V~~~~ 197 (238)
|-+...+++|.|.+++.+|+..|+++.+-..-...+ ... ..|+|..+.
T Consensus 34 LIFsL~d~pGaL~~vL~vFa~~gINLThIESRPsk~~~~e~Y~FfVD~Eg 83 (464)
T TIGR01270 34 IIFSLSNVVGDLSKAIAIFQDRHINILHLESRDSKDGTSKTMDVLVDVEL 83 (464)
T ss_pred EEEECCCCchHHHHHHHHHHHCCCCEEEEECCcCCCCCCccEEEEEEEEc
Confidence 334457789999999999999999999998766543 344 688887764
No 155
>PRK06349 homoserine dehydrogenase; Provisional
Probab=48.53 E-value=91 Score=29.76 Aligned_cols=36 Identities=14% Similarity=0.116 Sum_probs=30.7
Q ss_pred EEEEEEEeCCCCCcHHHHHHHHHhcCCceEEEEEee
Q 026479 147 IFKASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVT 182 (238)
Q Consensus 147 ~v~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist 182 (238)
.++|++...++||.|.+|...|.+.++.|.+..-..
T Consensus 348 ~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~ 383 (426)
T PRK06349 348 KYYLRLLVADKPGVLAKIAAIFAENGISIESILQKG 383 (426)
T ss_pred eEEEEEEecCCcchHHHHHHHHhhcCccEEEEEecc
Confidence 467999999999999999999999999988665433
No 156
>PRK06545 prephenate dehydrogenase; Validated
Probab=47.87 E-value=2e+02 Score=26.52 Aligned_cols=96 Identities=13% Similarity=0.152 Sum_probs=57.5
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHhcccCC--C---CCC----cceeeeccCCCCCCCceEEEEEEEeCCCCCcHHHHHHH
Q 026479 97 DKASLLARVVQRVRELKEQTIELTEVESF--P---SET----DEITVLASSDYSSDGTLIFKASLCCEDRSDLLPDIIEI 167 (238)
Q Consensus 97 dK~siL~~ai~yik~Lq~~~~~l~~~~~~--p---~~~----~ev~v~~~~d~~~~g~~~v~I~i~c~~r~GlL~~Il~a 167 (238)
++..|+..-=+|++.|+.-.+.|+..... - .+. +.++.... +.-...+.|.+.-+|+||.+..|+..
T Consensus 235 N~~~~~~~l~~~~~~l~~~~~~l~~~d~~~l~~~~~~~~~~r~~~~~~~~----~~~~~~~~~~v~v~d~pg~~~~~~~~ 310 (359)
T PRK06545 235 NAEALLDALDEWIEDLDRARDALESGDAEAIAELFDAGKAGRDRLPGKHG----GAIPSFYDLYVDVPDEPGVIARVTAI 310 (359)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccccC----CCCCcceEEEEeCCCCCCHHHHHHHH
Confidence 56667766677777777766666543200 0 000 00110000 00012244555668999999999999
Q ss_pred HHhcCCceEEEEEeecCCEEEEEEEEeec
Q 026479 168 LKSLHLKTLKSEMVTLGGRIRNVLIIAAE 196 (238)
Q Consensus 168 Le~lgL~V~~A~Ist~g~rv~~~f~V~~~ 196 (238)
|-+.|+.|.+..|.-.-+...-++.+.-.
T Consensus 311 ~~~~~i~i~~~~i~~~~~~~~g~~~~~~~ 339 (359)
T PRK06545 311 LGEEGISIENLRILEAREDIHGVLQISFK 339 (359)
T ss_pred HHHcCCCeecceeeeccCCcCceEEEEeC
Confidence 99999999999986655555555555444
No 157
>PRK14640 hypothetical protein; Provisional
Probab=47.42 E-value=1.2e+02 Score=24.94 Aligned_cols=55 Identities=13% Similarity=0.157 Sum_probs=39.8
Q ss_pred HHHHHHHhcCCceEEEEEeecCCEEEEEEEEeecCCCChhhHHHHHHHHHHHHhh
Q 026479 163 DIIEILKSLHLKTLKSEMVTLGGRIRNVLIIAAEKDHSIESVHFLQNALKSLLER 217 (238)
Q Consensus 163 ~Il~aLe~lgL~V~~A~Ist~g~rv~~~f~V~~~~~~~~~~~~~L~~aL~~vl~~ 217 (238)
-+-.+++++|+++....+...++...-.+++...++-..+.+..+.++|..+|+.
T Consensus 11 li~p~~~~~G~el~dve~~~~~~~~~lrV~ID~~~gv~lddC~~vSr~is~~LD~ 65 (152)
T PRK14640 11 LLEAPVVALGFELWGIEFIRAGKHSTLRVYIDGENGVSVENCAEVSHQVGAIMDV 65 (152)
T ss_pred HHHHHHHhcCCEEEEEEEEecCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHhcc
Confidence 4455678999999999988876654445555444333467888999999988864
No 158
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=47.12 E-value=1.5e+02 Score=24.02 Aligned_cols=43 Identities=14% Similarity=0.139 Sum_probs=29.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHhcCCce--EEEEEeecCCEEEEEEEE
Q 026479 150 ASLCCEDRSDLLPDIIEILKSLHLKT--LKSEMVTLGGRIRNVLII 193 (238)
Q Consensus 150 I~i~c~~r~GlL~~Il~aLe~lgL~V--~~A~Ist~g~rv~~~f~V 193 (238)
+-+.-+|+||-|.+|+++|...++.+ +.|-++-- ..++-++.+
T Consensus 72 laVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek-~KAlli~r~ 116 (142)
T COG4747 72 LAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEK-QKALLIVRV 116 (142)
T ss_pred EEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecC-ceEEEEEEh
Confidence 45678999999999999998886655 44444443 444433333
No 159
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=46.87 E-value=84 Score=20.88 Aligned_cols=26 Identities=12% Similarity=0.137 Sum_probs=22.3
Q ss_pred eCCCCCcHHHHHHHHHhcCCceEEEE
Q 026479 154 CEDRSDLLPDIIEILKSLHLKTLKSE 179 (238)
Q Consensus 154 c~~r~GlL~~Il~aLe~lgL~V~~A~ 179 (238)
..+.+|.+.+++.+|.+.|+.|....
T Consensus 9 ~~~~~g~~~~i~~~L~~~~I~i~~i~ 34 (75)
T cd04913 9 VPDKPGVAAKIFGALAEANINVDMIV 34 (75)
T ss_pred CCCCCcHHHHHHHHHHHcCCeEEEEE
Confidence 46789999999999999999996444
No 160
>PRK14634 hypothetical protein; Provisional
Probab=46.61 E-value=1.1e+02 Score=25.32 Aligned_cols=55 Identities=9% Similarity=-0.017 Sum_probs=39.0
Q ss_pred HHHHHHHhcCCceEEEEEeecCCEEEEEEEEeecCC--CChhhHHHHHHHHHHHHhh
Q 026479 163 DIIEILKSLHLKTLKSEMVTLGGRIRNVLIIAAEKD--HSIESVHFLQNALKSLLER 217 (238)
Q Consensus 163 ~Il~aLe~lgL~V~~A~Ist~g~rv~~~f~V~~~~~--~~~~~~~~L~~aL~~vl~~ 217 (238)
-+-.+++++|+++....+..-++...--+++....+ -..+.+..+.++|..+|+.
T Consensus 12 l~~~~~~~~G~elvdve~~~~~~~~~lrV~ID~~~g~~v~lddC~~vSr~is~~LD~ 68 (155)
T PRK14634 12 LASATAADKGFELCGIQVLTHLQPMTLQVQIRRSSGSDVSLDDCAGFSGPMGEALEA 68 (155)
T ss_pred HHHHHHHHcCCEEEEEEEEeCCCCcEEEEEEECCCCCcccHHHHHHHHHHHHHHhcc
Confidence 344567899999999999887665444455544444 3456788899999888864
No 161
>PRK14630 hypothetical protein; Provisional
Probab=46.31 E-value=1.1e+02 Score=24.87 Aligned_cols=57 Identities=9% Similarity=0.141 Sum_probs=40.3
Q ss_pred HHHHHHHHhcCCceEEEEEeecCCEEEEEEEEeecCCCChhhHHHHHHHHHHHHhhc
Q 026479 162 PDIIEILKSLHLKTLKSEMVTLGGRIRNVLIIAAEKDHSIESVHFLQNALKSLLERS 218 (238)
Q Consensus 162 ~~Il~aLe~lgL~V~~A~Ist~g~rv~~~f~V~~~~~~~~~~~~~L~~aL~~vl~~~ 218 (238)
.-+-.+++++|+++.......-++...-.+++...++-..+.+..+.+++...|+.+
T Consensus 12 ~li~~~~~~~G~eLvdve~~~~~~~~~lrV~Id~~~gV~idDC~~vSr~i~~~ld~~ 68 (143)
T PRK14630 12 NLIKNVTDRLGIEIIEINTFRNRNEGKIQIVLYKKDSFGVDTLCDLHKMILLILEAV 68 (143)
T ss_pred HHHHHHHHHcCCEEEEEEEEecCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHhccc
Confidence 345566899999999999887666544445554444444678888888888777654
No 162
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=45.70 E-value=81 Score=20.37 Aligned_cols=25 Identities=8% Similarity=0.110 Sum_probs=21.8
Q ss_pred CCCCCcHHHHHHHHHhcCCceEEEE
Q 026479 155 EDRSDLLPDIIEILKSLHLKTLKSE 179 (238)
Q Consensus 155 ~~r~GlL~~Il~aLe~lgL~V~~A~ 179 (238)
.+.+|++.+++.+|.+.++.+....
T Consensus 11 ~~~~~~~~~i~~~L~~~~i~v~~i~ 35 (63)
T cd04936 11 RSHPGVAAKMFEALAEAGINIEMIS 35 (63)
T ss_pred CCCccHHHHHHHHHHHCCCcEEEEE
Confidence 3568999999999999999997665
No 163
>PRK14646 hypothetical protein; Provisional
Probab=44.68 E-value=1.5e+02 Score=24.51 Aligned_cols=57 Identities=14% Similarity=0.132 Sum_probs=41.2
Q ss_pred HHHHHHHHHhcCCceEEEEEeecCCEEEEEEEEeecCC--CChhhHHHHHHHHHHHHhh
Q 026479 161 LPDIIEILKSLHLKTLKSEMVTLGGRIRNVLIIAAEKD--HSIESVHFLQNALKSLLER 217 (238)
Q Consensus 161 L~~Il~aLe~lgL~V~~A~Ist~g~rv~~~f~V~~~~~--~~~~~~~~L~~aL~~vl~~ 217 (238)
..-+..+++++|+++....+..-++...-.+++...++ -..+.+..+.+++..+|+.
T Consensus 10 ~~li~p~~~~~G~eLvdve~~~~~~~~~LrV~IDk~~g~gVtldDC~~vSr~is~~LD~ 68 (155)
T PRK14646 10 EILLEKVANEFDLKICSLNIQTNQNPIVIKIIIKKTNGDDISLDDCALFNTPASEEIEN 68 (155)
T ss_pred HHHHHHHHHHcCCEEEEEEEEeCCCCeEEEEEEECCCCCCccHHHHHHHHHHHHHHhCc
Confidence 34456678899999999999887776554555554422 2357788999999888853
No 164
>PRK08818 prephenate dehydrogenase; Provisional
Probab=43.49 E-value=1.2e+02 Score=28.71 Aligned_cols=44 Identities=11% Similarity=0.043 Sum_probs=34.4
Q ss_pred EeC-CCCCcHHHHHHHHHhcCCceEEEEEeecCCEEEEEEEEeecC
Q 026479 153 CCE-DRSDLLPDIIEILKSLHLKTLKSEMVTLGGRIRNVLIIAAEK 197 (238)
Q Consensus 153 ~c~-~r~GlL~~Il~aLe~lgL~V~~A~Ist~g~rv~~~f~V~~~~ 197 (238)
.-+ |+||.|.+|+.+|...|+++.+-++.. ..-..+.|++.-..
T Consensus 301 ~v~~d~pG~L~~vl~~la~~~INit~Ies~~-~r~~~y~f~i~~~~ 345 (370)
T PRK08818 301 YLPEDRPGSLRTLLHVFEQHGVNLSSIHSSR-TPAGELHFRIGFEP 345 (370)
T ss_pred ECCCCCCChHHHHHHHHHHcCcccceEEEec-ccCceEEEEEEEec
Confidence 335 999999999999999999999999833 33345558886664
No 165
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=42.96 E-value=64 Score=22.23 Aligned_cols=26 Identities=8% Similarity=0.133 Sum_probs=22.0
Q ss_pred CCCcHHHHHHHHHhcCCceEEEEEee
Q 026479 157 RSDLLPDIIEILKSLHLKTLKSEMVT 182 (238)
Q Consensus 157 r~GlL~~Il~aLe~lgL~V~~A~Ist 182 (238)
++|++.+++++|.+.|+++.....+.
T Consensus 14 ~~gv~~ki~~~L~~~~I~v~~i~~~~ 39 (66)
T cd04915 14 TPGVLARGLAALAEAGIEPIAAHQSM 39 (66)
T ss_pred cchHHHHHHHHHHHCCCCEEEEEecC
Confidence 68999999999999999997665544
No 166
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=42.92 E-value=1.1e+02 Score=20.86 Aligned_cols=21 Identities=10% Similarity=0.091 Sum_probs=17.7
Q ss_pred CCCCcHHHHHHHHHhcCCceE
Q 026479 156 DRSDLLPDIIEILKSLHLKTL 176 (238)
Q Consensus 156 ~r~GlL~~Il~aLe~lgL~V~ 176 (238)
..+|++.+++.+|.+.++.++
T Consensus 12 ~~~gv~~~~~~~L~~~~i~~i 32 (63)
T cd04920 12 SLLHKLGPALEVFGKKPVHLV 32 (63)
T ss_pred cCccHHHHHHHHHhcCCceEE
Confidence 579999999999999876664
No 167
>PRK14638 hypothetical protein; Provisional
Probab=41.58 E-value=1.4e+02 Score=24.40 Aligned_cols=55 Identities=13% Similarity=0.168 Sum_probs=39.4
Q ss_pred HHHHHHHhcCCceEEEEEeecCCEEEEEEEEeecCC-CChhhHHHHHHHHHHHHhh
Q 026479 163 DIIEILKSLHLKTLKSEMVTLGGRIRNVLIIAAEKD-HSIESVHFLQNALKSLLER 217 (238)
Q Consensus 163 ~Il~aLe~lgL~V~~A~Ist~g~rv~~~f~V~~~~~-~~~~~~~~L~~aL~~vl~~ 217 (238)
-+-.+++++|+++....+...++...-.+++...++ -..+.+..+.++|..+|+.
T Consensus 13 ~~~~i~~~~G~elvdve~~~~~~~~~lrV~ID~~~G~v~lddC~~vSr~is~~LD~ 68 (150)
T PRK14638 13 EAERIAEEQGLEIFDVQYRRESRGWVLRIIIDNPVGYVSVRDCELFSREIERFLDR 68 (150)
T ss_pred HHHHHHHHcCCEEEEEEEEecCCCcEEEEEEECCCCCcCHHHHHHHHHHHHHHhcc
Confidence 344567899999999999887665444555544433 3467888999999988864
No 168
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.
Probab=41.46 E-value=1.4e+02 Score=25.58 Aligned_cols=44 Identities=14% Similarity=0.148 Sum_probs=35.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHhcCCceEEEEEeec--CCEEEEEEEE
Q 026479 150 ASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVTL--GGRIRNVLII 193 (238)
Q Consensus 150 I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~--g~rv~~~f~V 193 (238)
+-+...|+||.+.+|...|-+.++.|-..+++.. ++.++-++.+
T Consensus 151 L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~v 196 (208)
T TIGR00719 151 ILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEI 196 (208)
T ss_pred EEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEe
Confidence 3345689999999999999999999999998874 4665555555
No 169
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=41.16 E-value=1.3e+02 Score=21.35 Aligned_cols=53 Identities=13% Similarity=0.127 Sum_probs=34.2
Q ss_pred CCCCcHHHHHHHHHhcCCceEEEEEeecCCEEEEEEEEeecCCCChhhHHHHHHHHHH
Q 026479 156 DRSDLLPDIIEILKSLHLKTLKSEMVTLGGRIRNVLIIAAEKDHSIESVHFLQNALKS 213 (238)
Q Consensus 156 ~r~GlL~~Il~aLe~lgL~V~~A~Ist~g~rv~~~f~V~~~~~~~~~~~~~L~~aL~~ 213 (238)
..+|++.+|+++|.+.|+.|-.-.. ++ .--.|.+....-. .+.++.|...|.+
T Consensus 13 ~~~g~~~~If~~la~~~I~vd~I~~---s~-~~isftv~~~~~~-~~~l~~l~~el~~ 65 (73)
T cd04934 13 LSHGFLARIFAILDKYRLSVDLIST---SE-VHVSMALHMENAE-DTNLDAAVKDLQK 65 (73)
T ss_pred cccCHHHHHHHHHHHcCCcEEEEEe---CC-CEEEEEEehhhcC-hHHHHHHHHHHHH
Confidence 3599999999999999998887643 23 3345556543211 1255566665554
No 170
>PRK14632 hypothetical protein; Provisional
Probab=40.36 E-value=1.4e+02 Score=25.07 Aligned_cols=54 Identities=22% Similarity=0.212 Sum_probs=36.9
Q ss_pred HHHHHHhcCCceEEEEEeecCCEEEEEEEEeecCCCChhhHHHHHHHHHHHHhhc
Q 026479 164 IIEILKSLHLKTLKSEMVTLGGRIRNVLIIAAEKDHSIESVHFLQNALKSLLERS 218 (238)
Q Consensus 164 Il~aLe~lgL~V~~A~Ist~g~rv~~~f~V~~~~~~~~~~~~~L~~aL~~vl~~~ 218 (238)
+-.+++++|+++....+.. ++...-.++|...++-..+.+..+.++|..+|+..
T Consensus 14 i~pv~~~~G~eLvdve~~~-~~~~~lrV~ID~~~GV~ldDC~~vSr~is~~LD~~ 67 (172)
T PRK14632 14 AGPFLASLGLELWGIELSY-GGRTVVRLFVDGPEGVTIDQCAEVSRHVGLALEVE 67 (172)
T ss_pred HHHHHHHCCCEEEEEEEEe-CCCcEEEEEEECCCCCCHHHHHHHHHHHHHHhccc
Confidence 3445789999999999886 44433344444333334678889999998888643
No 171
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=40.34 E-value=90 Score=19.35 Aligned_cols=38 Identities=5% Similarity=0.038 Sum_probs=26.5
Q ss_pred CCCCcHHHHHHHHHhcCCceEEEEEeecCCEEEEEEEEee
Q 026479 156 DRSDLLPDIIEILKSLHLKTLKSEMVTLGGRIRNVLIIAA 195 (238)
Q Consensus 156 ~r~GlL~~Il~aLe~lgL~V~~A~Ist~g~rv~~~f~V~~ 195 (238)
+.+|.+.+++++|.+.++.|.....+.. ..--+|.+..
T Consensus 12 ~~~~~~~~i~~~l~~~~i~i~~i~~~~~--~~~~s~~v~~ 49 (60)
T cd04868 12 GTPGVAAKIFSALAEAGINVDMISQSES--EVNISFTVDE 49 (60)
T ss_pred CCCCHHHHHHHHHHHCCCcEEEEEcCCC--cEEEEEEEeH
Confidence 3789999999999999999976654332 1223455543
No 172
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=39.35 E-value=9.2 Score=38.99 Aligned_cols=54 Identities=17% Similarity=0.195 Sum_probs=46.0
Q ss_pred hhccHHHHHHHHHHHHHHHHHHhccCCC-----CCCChhhHHHHHHHHHHHHHHHHHHHhcc
Q 026479 66 KNHKEAEKRRRERINSHLNKLRSILSCN-----SKLDKASLLARVVQRVRELKEQTIELTEV 122 (238)
Q Consensus 66 ~~h~~~ER~RR~~in~~~~~Lr~lvP~~-----~k~dK~siL~~ai~yik~Lq~~~~~l~~~ 122 (238)
..|..++||+|..+-++|..|-+|.|.. .++.+++||. +.|+.+++.-+.+.+.
T Consensus 789 a~sih~lrr~~~~~~dq~~sL~alrp~v~~~~~ql~S~tS~L~---dp~~~~eq~ska~~e~ 847 (856)
T KOG3582|consen 789 AGSIHALRRTRLNWLDQFCSLPALRPQVLLNLRQLLSSTSILT---DPIKQPEQASKAVTEK 847 (856)
T ss_pred cchHHHHHHHHHHHhhccccHHHHHHHHHhhHHHhhhhhhccc---CcccchHHHHHHHHhh
Confidence 4678899999999999999999999943 3678999999 8899998888877664
No 173
>PRK14633 hypothetical protein; Provisional
Probab=39.33 E-value=1.7e+02 Score=23.89 Aligned_cols=55 Identities=15% Similarity=0.203 Sum_probs=39.2
Q ss_pred HHHHHHHhcCCceEEEEEeecCCEEEEEEEEeecCCCChhhHHHHHHHHHHHHhhc
Q 026479 163 DIIEILKSLHLKTLKSEMVTLGGRIRNVLIIAAEKDHSIESVHFLQNALKSLLERS 218 (238)
Q Consensus 163 ~Il~aLe~lgL~V~~A~Ist~g~rv~~~f~V~~~~~~~~~~~~~L~~aL~~vl~~~ 218 (238)
-+-.+++++|+++....+..-++.++-+| +...++-..+.+..+.++|..+|+..
T Consensus 9 lv~p~~~~~G~eL~dve~~~~~~~~lrV~-ID~~~Gv~lddC~~vSr~i~~~LD~~ 63 (150)
T PRK14633 9 IVEPITADLGYILWGIEVVGSGKLTIRIF-IDHENGVSVDDCQIVSKEISAVFDVE 63 (150)
T ss_pred HHHHHHHHCCCEEEEEEEEeCCCcEEEEE-EeCCCCCCHHHHHHHHHHHHHHhccC
Confidence 45567899999999999887666544333 33333334678889999999888643
No 174
>PRK14645 hypothetical protein; Provisional
Probab=37.85 E-value=2e+02 Score=23.74 Aligned_cols=59 Identities=20% Similarity=0.250 Sum_probs=40.5
Q ss_pred cHHHHHHHHHhcCCceEEEEEeecCCEEEEEEEEeecCC--CChhhHHHHHHHHHHHHhhc
Q 026479 160 LLPDIIEILKSLHLKTLKSEMVTLGGRIRNVLIIAAEKD--HSIESVHFLQNALKSLLERS 218 (238)
Q Consensus 160 lL~~Il~aLe~lgL~V~~A~Ist~g~rv~~~f~V~~~~~--~~~~~~~~L~~aL~~vl~~~ 218 (238)
+-.-+-.+++++|+++....+..-++...-.+++....+ -..+.+..+.+++..+|+..
T Consensus 11 i~~li~~~~~~~G~elvdve~~~~~~~~ilrV~ID~~~~~~v~lddC~~vSr~is~~LD~~ 71 (154)
T PRK14645 11 LQQLAEGALEPLGYEVLEVQVQRSGGKRIVLVRIDRKDEQPVTVEDLERASRALEAELDRL 71 (154)
T ss_pred HHHHHHHHHHHcCCEEEEEEEEeCCCCeEEEEEEECCCCCCcCHHHHHHHHHHHHHHhccc
Confidence 444556778899999999999877654433444443222 24567888999998888643
No 175
>COG0779 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.81 E-value=1.4e+02 Score=24.71 Aligned_cols=53 Identities=21% Similarity=0.284 Sum_probs=39.5
Q ss_pred HHHHHHhcCCceEEEEEeecCCEEEEEEEEeecCCCChhhHHHHHHHHHHHHh
Q 026479 164 IIEILKSLHLKTLKSEMVTLGGRIRNVLIIAAEKDHSIESVHFLQNALKSLLE 216 (238)
Q Consensus 164 Il~aLe~lgL~V~~A~Ist~g~rv~~~f~V~~~~~~~~~~~~~L~~aL~~vl~ 216 (238)
+-.+++.+|+++....+...|....--+++....+-..+.+..+.+++..+|+
T Consensus 14 iep~~~~lG~ELv~ve~~~~~~~~~lrI~id~~g~v~lddC~~vSr~is~~LD 66 (153)
T COG0779 14 IEPVVESLGFELVDVEFVKEGRDSVLRIYIDKEGGVTLDDCADVSRAISALLD 66 (153)
T ss_pred HHHhHhhcCcEEEEEEEEEcCCCcEEEEEeCCCCCCCHHHHHHHHHHHHHHhc
Confidence 34467899999999999999865444444544444457788999999999986
No 176
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=37.79 E-value=86 Score=29.84 Aligned_cols=46 Identities=17% Similarity=0.122 Sum_probs=38.5
Q ss_pred EEEEEEeCCCCCcHHHHHHHHHhcCCceEEEEEeecCCEEEEEEEE
Q 026479 148 FKASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVTLGGRIRNVLII 193 (238)
Q Consensus 148 v~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~g~rv~~~f~V 193 (238)
..|-+.-.++||.+.+|+.+|.+.|+.|-.-++...++.+..+|-+
T Consensus 339 ~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~iie~ 384 (409)
T PRK11790 339 HRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVIDV 384 (409)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEEEe
Confidence 3455567999999999999999999999888888888777666654
No 177
>PF02576 DUF150: Uncharacterised BCR, YhbC family COG0779; InterPro: IPR003728 The RimP protein facilitates maturation of the 30S ribsomal subunit, and is required for the efficient production of translationally competent ribosmomes [].; PDB: 1IB8_A.
Probab=37.63 E-value=1.3e+02 Score=24.09 Aligned_cols=53 Identities=23% Similarity=0.330 Sum_probs=35.5
Q ss_pred HHHHHhcCCceEEEEEeecCCEEEEEEEEeecCCCChhhHHHHHHHHHHHHhh
Q 026479 165 IEILKSLHLKTLKSEMVTLGGRIRNVLIIAAEKDHSIESVHFLQNALKSLLER 217 (238)
Q Consensus 165 l~aLe~lgL~V~~A~Ist~g~rv~~~f~V~~~~~~~~~~~~~L~~aL~~vl~~ 217 (238)
-..++++|+++...++..-++...-.+++...++-+-+.+..+.+++...|+.
T Consensus 3 ~~~~~~~g~~l~~v~~~~~~~~~~l~V~id~~~gv~lddc~~~sr~i~~~LD~ 55 (141)
T PF02576_consen 3 EPLLEELGLELVDVEVVKEGGNRILRVFIDKDGGVSLDDCEKVSRAISALLDA 55 (141)
T ss_dssp HHHH-S-SSEEEEEEEEEETTEEEEEEEEE-SS---HHHHHHHHHHHGGGTTT
T ss_pred ccchhhcCCEEEEEEEEECCCCEEEEEEEEeCCCCCHHHHHHHHHHHHHHHcc
Confidence 35688999999999999988775555555444433456778888888888855
No 178
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=37.56 E-value=3.1e+02 Score=25.94 Aligned_cols=64 Identities=11% Similarity=0.000 Sum_probs=41.9
Q ss_pred eEEEEEEEeCCCCCcHHHHHHHHHhcCCceEEEEEe-ecC-CEEEEEEEEeecCCCChhhHHHHHHHHH
Q 026479 146 LIFKASLCCEDRSDLLPDIIEILKSLHLKTLKSEMV-TLG-GRIRNVLIIAAEKDHSIESVHFLQNALK 212 (238)
Q Consensus 146 ~~v~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Is-t~g-~rv~~~f~V~~~~~~~~~~~~~L~~aL~ 212 (238)
..+.+++.-++|||-|.++++.+-..+-+|...+-. ..+ +...-.+.++..+ .+..+.|.++|.
T Consensus 324 r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~y~~~~~~~~~~v~v~iE~~~---~~h~~~i~~~L~ 389 (409)
T TIGR02079 324 LKHYFIVRFPQRPGALREFLNDVLGPNDDITRFEYTKKSNRETGPALIGIELND---KEDFAGLLERMA 389 (409)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeecCCCCeEEEEEEEEeCC---HHHHHHHHHHHH
Confidence 457788889999999999999777776688877654 222 3333444555442 344455555554
No 179
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=37.30 E-value=1.1e+02 Score=21.15 Aligned_cols=47 Identities=15% Similarity=0.248 Sum_probs=35.2
Q ss_pred hccHHHHHHHHHHHHHHHHHHhccCCCCCCChhhHHHHHHHHHHHHHHHHHHHh
Q 026479 67 NHKEAEKRRRERINSHLNKLRSILSCNSKLDKASLLARVVQRVRELKEQTIELT 120 (238)
Q Consensus 67 ~h~~~ER~RR~~in~~~~~Lr~lvP~~~k~dK~siL~~ai~yik~Lq~~~~~l~ 120 (238)
+....=|..|-..+.++..+..++- ..+ .++|.+||+.+-...+...
T Consensus 11 ~~~~~lR~~RHD~~NhLqvI~gllq-lg~------~~~a~eYi~~~~~~~~~~s 57 (62)
T PF14689_consen 11 ELIDSLRAQRHDFLNHLQVIYGLLQ-LGK------YEEAKEYIKELSKDLQQES 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-TT-------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHH-CCC------HHHHHHHHHHHHHHHHHHH
Confidence 3344458889999999999999982 223 3667899999998888764
No 180
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=35.51 E-value=44 Score=20.48 Aligned_cols=19 Identities=42% Similarity=0.746 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 026479 70 EAEKRRRERINSHLNKLRS 88 (238)
Q Consensus 70 ~~ER~RR~~in~~~~~Lr~ 88 (238)
.-=|+||+.+..++..||.
T Consensus 11 eqLrrr~eqLK~kLeqlrn 29 (32)
T PF02344_consen 11 EQLRRRREQLKHKLEQLRN 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3348899999999999985
No 181
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=34.54 E-value=1.6e+02 Score=20.55 Aligned_cols=31 Identities=13% Similarity=0.084 Sum_probs=24.4
Q ss_pred EEEEEe---CCCCCcHHHHHHHHHhcCCceEEEE
Q 026479 149 KASLCC---EDRSDLLPDIIEILKSLHLKTLKSE 179 (238)
Q Consensus 149 ~I~i~c---~~r~GlL~~Il~aLe~lgL~V~~A~ 179 (238)
.|++.+ .+.+|++.+++++|.+.|+.|....
T Consensus 3 ~Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~~i~ 36 (75)
T cd04912 3 LLNIKSNRMLGAHGFLAKVFEIFAKHGLSVDLIS 36 (75)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHcCCeEEEEE
Confidence 455532 4569999999999999999996654
No 182
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=34.05 E-value=1.2e+02 Score=19.03 Aligned_cols=40 Identities=10% Similarity=0.088 Sum_probs=28.2
Q ss_pred CCCCCcHHHHHHHHHhcCCceEEEEEeecC-CEEEEEEEEe
Q 026479 155 EDRSDLLPDIIEILKSLHLKTLKSEMVTLG-GRIRNVLIIA 194 (238)
Q Consensus 155 ~~r~GlL~~Il~aLe~lgL~V~~A~Ist~g-~rv~~~f~V~ 194 (238)
.+.+|.+.+++.+|.+.|+.|.....+..+ +...-+|.+.
T Consensus 9 ~~~~~~~~~i~~~L~~~~i~i~~i~~~~~~~~~~~is~~v~ 49 (61)
T cd04891 9 PDKPGVAAKIFSALAEAGINVDMIVQSVSRGGTTDISFTVP 49 (61)
T ss_pred CCCCcHHHHHHHHHHHcCCcEEEEEEcCCCCCcEEEEEEEe
Confidence 667999999999999999999776553222 2233445553
No 183
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=33.82 E-value=1.7e+02 Score=24.69 Aligned_cols=64 Identities=11% Similarity=0.158 Sum_probs=42.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHhcCCceEEEEEeecCC--EEEEEEEEeecCCCChhhHHHHHHHHHHHHhh
Q 026479 150 ASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVTLGG--RIRNVLIIAAEKDHSIESVHFLQNALKSLLER 217 (238)
Q Consensus 150 I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~g~--rv~~~f~V~~~~~~~~~~~~~L~~aL~~vl~~ 217 (238)
+.+--.+.||.|.+++..|...|+.|-+-.+..... -..-++++.. + +....++...|.++++.
T Consensus 7 lsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~g-~---~~~~EQi~kQL~kLidV 72 (163)
T COG0440 7 LSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVSG-D---EQVLEQIIKQLNKLIDV 72 (163)
T ss_pred EEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEcC-C---cchHHHHHHHHHhhccc
Confidence 444557899999999999999999999888765543 2333333333 2 23445566666655543
No 184
>cd04917 ACT_AKiii-LysC-EC_2 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The second ACT domain (ACT2), this CD, is not involved in the binding of heterotrophic effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=31.32 E-value=1.6e+02 Score=19.61 Aligned_cols=26 Identities=12% Similarity=0.307 Sum_probs=18.5
Q ss_pred EEEEEeC---CCCCcHHHHHHHHHhcCCc
Q 026479 149 KASLCCE---DRSDLLPDIIEILKSLHLK 174 (238)
Q Consensus 149 ~I~i~c~---~r~GlL~~Il~aLe~lgL~ 174 (238)
.|.+.+. .++|++.+++++|.+.++.
T Consensus 3 lIsvvG~~~~~~~~v~~~i~~~L~~i~i~ 31 (64)
T cd04917 3 LVALIGNDISETAGVEKRIFDALEDINVR 31 (64)
T ss_pred EEEEECCCccCCcCHHHHHHHHHHhCCeE
Confidence 3555554 5789999999999764333
No 185
>PRK00341 hypothetical protein; Provisional
Probab=31.10 E-value=2.2e+02 Score=21.36 Aligned_cols=62 Identities=18% Similarity=0.185 Sum_probs=40.9
Q ss_pred EEEEEEeCCCCCcHHHHHHHHHhcCCceEEEEE----eecCCEEEEEEEEeecCCCChhhHHHHHHHHHH
Q 026479 148 FKASLCCEDRSDLLPDIIEILKSLHLKTLKSEM----VTLGGRIRNVLIIAAEKDHSIESVHFLQNALKS 213 (238)
Q Consensus 148 v~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~I----st~g~rv~~~f~V~~~~~~~~~~~~~L~~aL~~ 213 (238)
+-++|-....+++...|.++++.+. ++-.+.+ |.-|-.+--++.+.+. +.+.+..|-++|.+
T Consensus 18 ~~~KViG~~~~~~~~~V~~iv~~~~-~~~~~~~~~k~Ss~GkY~S~tv~i~~~---s~~q~~~iy~~L~~ 83 (91)
T PRK00341 18 YPIKVIGDTGVGFKDLVIEILQKHA-DVDLSTLAERQSSNGKYTTVQLHIVAT---DEDQLQDINSALRA 83 (91)
T ss_pred ccEEEEEcCchhHHHHHHHHHHHhC-CCcccceeeccCCCCEEEEEEEEEEEC---CHHHHHHHHHHHhh
Confidence 5678888999999999999998775 5544443 4444444344444443 24667777777653
No 186
>PRK14641 hypothetical protein; Provisional
Probab=29.39 E-value=2.6e+02 Score=23.60 Aligned_cols=49 Identities=14% Similarity=0.216 Sum_probs=35.7
Q ss_pred HhcCCceEEEEEeecCCEEEEEEEEeecCCCChhhHHHHHHHHHHHHhh
Q 026479 169 KSLHLKTLKSEMVTLGGRIRNVLIIAAEKDHSIESVHFLQNALKSLLER 217 (238)
Q Consensus 169 e~lgL~V~~A~Ist~g~rv~~~f~V~~~~~~~~~~~~~L~~aL~~vl~~ 217 (238)
.++|+++....+..-++...-.++|...++-..+.+..+.+++..+|+.
T Consensus 20 ~~~G~eLvdve~~~~~~~~~lrV~ID~~~gv~lDdC~~vSr~Is~~LD~ 68 (173)
T PRK14641 20 KGEGVYLVSMTVKGSGKGRKIEVLLDADTGIRIDQCAFFSRRIRERLEE 68 (173)
T ss_pred ccCCeEEEEEEEEeCCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHHhCc
Confidence 4899999999998877654444555443333467888999999888863
No 187
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=29.00 E-value=76 Score=30.61 Aligned_cols=36 Identities=22% Similarity=0.436 Sum_probs=31.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHHhcCCceEEEEEeecC
Q 026479 149 KASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVTLG 184 (238)
Q Consensus 149 ~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~g 184 (238)
.++++|+||-|+.-.++..|-.-++++-...|-..|
T Consensus 2 RleV~cedRlGltrelLdlLv~r~idl~~iEid~~~ 37 (511)
T COG3283 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIG 37 (511)
T ss_pred ceEEEehhhhchHHHHHHHHHhcccCccceeecCCC
Confidence 478999999999999999999999999988885443
No 188
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=28.98 E-value=3.5e+02 Score=22.76 Aligned_cols=50 Identities=10% Similarity=0.147 Sum_probs=36.1
Q ss_pred EEEEEEEeCCCCCcHHHHHHHHHhcCCceEEEEEeec---CCEEEEEEEEeec
Q 026479 147 IFKASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVTL---GGRIRNVLIIAAE 196 (238)
Q Consensus 147 ~v~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~---g~rv~~~f~V~~~ 196 (238)
.+.+.|.-.|+||-|.++++.|-+.|-+|+..-=+.- |+++---+.+...
T Consensus 5 ritldIEL~D~PGQLl~vLqPls~~g~NiItIiH~r~kk~g~r~pV~i~~~~d 57 (170)
T COG2061 5 RITLDIELKDKPGQLLKVLQPLSKTGANIITIIHSRDKKYGPRVPVQIVFEGD 57 (170)
T ss_pred EEEEEEEecCCCcchhhhhcchhhcCccEEEEEeecCcccCCceeEEEEEEec
Confidence 3566777899999999999999999988876654443 5565444444433
No 189
>PRK14631 hypothetical protein; Provisional
Probab=28.38 E-value=3.3e+02 Score=22.93 Aligned_cols=55 Identities=13% Similarity=0.116 Sum_probs=37.5
Q ss_pred HHHHHHHhcCCceEEEEEeecCCEEEEEEEEeec------------------CCCChhhHHHHHHHHHHHHhh
Q 026479 163 DIIEILKSLHLKTLKSEMVTLGGRIRNVLIIAAE------------------KDHSIESVHFLQNALKSLLER 217 (238)
Q Consensus 163 ~Il~aLe~lgL~V~~A~Ist~g~rv~~~f~V~~~------------------~~~~~~~~~~L~~aL~~vl~~ 217 (238)
-+..+++++|+++....+..-++...--++|... .+-..+.+..+.++|..+|+.
T Consensus 13 li~p~~~~~G~eLvdve~~~~~~~~~LrV~ID~~~~~~~~~~~~~~~~~~~~~gvtiddC~~vSr~is~~LD~ 85 (174)
T PRK14631 13 IIAPAVAACGVDLWGIEFLPQGKRSLLRIYIDRLVEENAEPVINEDGEVEQGRGIGVEDCVRVTQQVGAMLDV 85 (174)
T ss_pred HHHHHHHHcCCEEEEEEEEeCCCceEEEEEEecCcccccccccccccccccCCCcCHHHHHHHHHHHHHHhcc
Confidence 3445678999999999998876554334444432 112356788999999988863
No 190
>PRK08639 threonine dehydratase; Validated
Probab=28.10 E-value=4.1e+02 Score=25.16 Aligned_cols=65 Identities=11% Similarity=0.027 Sum_probs=39.1
Q ss_pred eEEEEEEEeCCCCCcHHHHHHHHHhcCCceEEEEEeec-C-CEEEEEEEEeecCCCChhhHHHHHHHHHH
Q 026479 146 LIFKASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVTL-G-GRIRNVLIIAAEKDHSIESVHFLQNALKS 213 (238)
Q Consensus 146 ~~v~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~-g-~rv~~~f~V~~~~~~~~~~~~~L~~aL~~ 213 (238)
..+.+++.-++|||-|.++++.+-+.+-+|+..+-... + +...-.+.++..+ .+..+.|.++|.+
T Consensus 335 r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~~~~~~~~~~~~v~v~iE~~~---~~h~~~i~~~L~~ 401 (420)
T PRK08639 335 LKHYFIVNFPQRPGALREFLDDVLGPNDDITRFEYLKKNNRETGPVLVGIELKD---AEDYDGLIERMEA 401 (420)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEEeecCCCCceEEEEEEEeCC---HHHHHHHHHHHHH
Confidence 56788888999999999999966555557776654321 1 1222223333332 3455566666653
No 191
>PRK14644 hypothetical protein; Provisional
Probab=27.63 E-value=2.4e+02 Score=22.79 Aligned_cols=49 Identities=12% Similarity=0.281 Sum_probs=36.3
Q ss_pred HHHHhcCCceEEEEEeecCCEEEEEEEEeecCCCChhhHHHHHHHHHHHHhh
Q 026479 166 EILKSLHLKTLKSEMVTLGGRIRNVLIIAAEKDHSIESVHFLQNALKSLLER 217 (238)
Q Consensus 166 ~aLe~lgL~V~~A~Ist~g~rv~~~f~V~~~~~~~~~~~~~L~~aL~~vl~~ 217 (238)
.+++++|+++....+..-++...-.+++.. . ..+.+..+.++|..+|+.
T Consensus 6 ~~~~~~g~el~dve~~~~~~~~~LrV~Idk--~-~iddC~~vSr~is~~LD~ 54 (136)
T PRK14644 6 KLLEKFGNKINEIKIVKEDGDLFLEVILNS--R-DLKDIEELTKEISDFIDN 54 (136)
T ss_pred hhHHhcCCEEEEEEEEeCCCCEEEEEEECC--C-CHHHHHHHHHHHHHHhcc
Confidence 468899999999999887766544444432 2 467888899999888854
No 192
>PRK03094 hypothetical protein; Provisional
Probab=26.93 E-value=85 Score=23.32 Aligned_cols=20 Identities=20% Similarity=0.260 Sum_probs=16.4
Q ss_pred cHHHHHHHHHhcCCceEEEE
Q 026479 160 LLPDIIEILKSLHLKTLKSE 179 (238)
Q Consensus 160 lL~~Il~aLe~lgL~V~~A~ 179 (238)
-|..|-++|++.|.+|++-+
T Consensus 9 ~Ls~i~~~L~~~GYeVv~l~ 28 (80)
T PRK03094 9 SLTDVQQALKQKGYEVVQLR 28 (80)
T ss_pred CcHHHHHHHHHCCCEEEecC
Confidence 37889999999999997553
No 193
>PRK14643 hypothetical protein; Provisional
Probab=26.36 E-value=3.5e+02 Score=22.50 Aligned_cols=55 Identities=9% Similarity=0.057 Sum_probs=38.9
Q ss_pred HHHHHHHhcCCceEEEEEeecCCEEEEEEEEee---c-CCCChhhHHHHHHHHHHHHhh
Q 026479 163 DIIEILKSLHLKTLKSEMVTLGGRIRNVLIIAA---E-KDHSIESVHFLQNALKSLLER 217 (238)
Q Consensus 163 ~Il~aLe~lgL~V~~A~Ist~g~rv~~~f~V~~---~-~~~~~~~~~~L~~aL~~vl~~ 217 (238)
-+-.+++++|+++.......-++...-.+++.. . ++-+.+.+..+.++|..+|+.
T Consensus 14 l~~p~~~~~G~eL~die~~~~~~~~~lrV~Id~~~~~~ggvtldDC~~vSr~is~~LD~ 72 (164)
T PRK14643 14 LVNKELEVLNLKVYEINNLKEFENDMIQILVEDILQANKPLDFDILIKANDLVSNKIDQ 72 (164)
T ss_pred HHHHHHHhcCCEEEEEEEEecCCCcEEEEEEecCCCcCCCcCHHHHHHHHHHHHHHhCc
Confidence 344567899999999999888776544555532 2 223456788889999888863
No 194
>PRK12483 threonine dehydratase; Reviewed
Probab=22.81 E-value=4.9e+02 Score=25.76 Aligned_cols=62 Identities=6% Similarity=-0.030 Sum_probs=39.0
Q ss_pred eEEEEEEEeCCCCCcHHHHHHHHHhcCCceEEEEEeecCCE-EEEEEEEeecCCCChhhH-HHHHHHHH
Q 026479 146 LIFKASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVTLGGR-IRNVLIIAAEKDHSIESV-HFLQNALK 212 (238)
Q Consensus 146 ~~v~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~g~r-v~~~f~V~~~~~~~~~~~-~~L~~aL~ 212 (238)
..+.+.+.-+++||-|.+++..|-+. +|+..+-...+.+ +.-.+.++..+ .+.. +.|..+|.
T Consensus 344 r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie~~~---~~~~~~~i~~~l~ 407 (521)
T PRK12483 344 REAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRYADAREAHLFVGVQTHP---RHDPRAQLLASLR 407 (521)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEecCCCeeEEEEEEEeCC---hhhhHHHHHHHHH
Confidence 45778888899999999999999888 7776665443322 33333344332 2222 45555554
No 195
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=21.75 E-value=2.8e+02 Score=19.13 Aligned_cols=46 Identities=13% Similarity=0.172 Sum_probs=31.2
Q ss_pred HHHHHHHHHhcCCceEEEEEeec--CCEEEEEEEEeecCCCChhhHHHHHHHHHHHH
Q 026479 161 LPDIIEILKSLHLKTLKSEMVTL--GGRIRNVLIIAAEKDHSIESVHFLQNALKSLL 215 (238)
Q Consensus 161 L~~Il~aLe~lgL~V~~A~Ist~--g~rv~~~f~V~~~~~~~~~~~~~L~~aL~~vl 215 (238)
+..+++++++.| +..+.++-. |+.++-.+ ......+.+.++|.+..
T Consensus 36 i~~~~~~~~~~G--a~~~~~sGsG~G~~v~~l~-------~~~~~~~~v~~~l~~~~ 83 (85)
T PF08544_consen 36 IDELKEAAEENG--ALGAKMSGSGGGPTVFALC-------KDEDDAERVAEALREHY 83 (85)
T ss_dssp HHHHHHHHHHTT--ESEEEEETTSSSSEEEEEE-------SSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCC--CCceecCCCCCCCeEEEEE-------CCHHHHHHHHHHHHHhC
Confidence 457788888888 788889888 77754433 12455667777776543
No 196
>PRK14636 hypothetical protein; Provisional
Probab=21.56 E-value=4.9e+02 Score=21.89 Aligned_cols=55 Identities=16% Similarity=0.114 Sum_probs=38.2
Q ss_pred HHHHHHHhcCCceEEEEEeecCCEEEEEEEEeecCC--CChhhHHHHHHHHHHHHhh
Q 026479 163 DIIEILKSLHLKTLKSEMVTLGGRIRNVLIIAAEKD--HSIESVHFLQNALKSLLER 217 (238)
Q Consensus 163 ~Il~aLe~lgL~V~~A~Ist~g~rv~~~f~V~~~~~--~~~~~~~~L~~aL~~vl~~ 217 (238)
-+-.+++++|+++....+..-++...-.+++....+ -..+.+..+.++|..+|..
T Consensus 10 lvep~~~~~GleLvdve~~~~~~~~~lrV~ID~~~~ggV~lDDC~~vSr~Is~~LD~ 66 (176)
T PRK14636 10 LIEPEAKALGLDLVRVAMFGGKSDPTLQIMAERPDTRQLVIEDCAALSRRLSDVFDE 66 (176)
T ss_pred HHHHHHHHcCCEEEEEEEEcCCCCeEEEEEEECCCCCCcCHHHHHHHHHHHHHHhcc
Confidence 344567899999999998877655444444443321 2357888999999888864
No 197
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=21.48 E-value=2.8e+02 Score=20.22 Aligned_cols=25 Identities=8% Similarity=0.073 Sum_probs=21.2
Q ss_pred CCCCCcHHHHHHHHHhcCCceEEEE
Q 026479 155 EDRSDLLPDIIEILKSLHLKTLKSE 179 (238)
Q Consensus 155 ~~r~GlL~~Il~aLe~lgL~V~~A~ 179 (238)
....|++.+++++|++.|+.+-+.-
T Consensus 12 n~evGF~rk~L~I~E~~~is~Eh~P 36 (76)
T cd04911 12 NREVGFGRKLLSILEDNGISYEHMP 36 (76)
T ss_pred cchhcHHHHHHHHHHHcCCCEeeec
Confidence 4467999999999999999887654
No 198
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=21.16 E-value=2.6e+02 Score=27.44 Aligned_cols=41 Identities=17% Similarity=0.228 Sum_probs=32.3
Q ss_pred EeCCCCCcHHHHHHHHHhcCCceEEEEEee--cCCEEEEEEEE
Q 026479 153 CCEDRSDLLPDIIEILKSLHLKTLKSEMVT--LGGRIRNVLII 193 (238)
Q Consensus 153 ~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist--~g~rv~~~f~V 193 (238)
...|+||.+..|...|-+.++.|-.-+++. -|+.++-++-+
T Consensus 458 ~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~ 500 (526)
T PRK13581 458 RNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSV 500 (526)
T ss_pred EeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEEC
Confidence 568999999999999999999998888776 34555544444
No 199
>PRK15385 magnesium transport protein MgtC; Provisional
Probab=20.47 E-value=6e+02 Score=22.43 Aligned_cols=39 Identities=10% Similarity=0.140 Sum_probs=32.2
Q ss_pred eEEEEEEEeCCCCC--cHHHHHHHHHhcCCceEEEEEeecC
Q 026479 146 LIFKASLCCEDRSD--LLPDIIEILKSLHLKTLKSEMVTLG 184 (238)
Q Consensus 146 ~~v~I~i~c~~r~G--lL~~Il~aLe~lgL~V~~A~Ist~g 184 (238)
..+.+++.|.+..+ +...+++.|++.++.+.+.++...+
T Consensus 141 ~~~~~~v~~~~~~~~~vr~~L~~~l~~~~~~~~~l~~~~~~ 181 (225)
T PRK15385 141 KRYILKVTCNKEDESAVRQWLLNIVKEAAICLQGLGSVPAQ 181 (225)
T ss_pred eEEEEEEEEcCcchhHHHHHHHHHHHhCCCceEEeEeeecC
Confidence 45678889988665 5899999999999999999997654
No 200
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=20.01 E-value=8e+02 Score=24.01 Aligned_cols=62 Identities=5% Similarity=-0.054 Sum_probs=38.7
Q ss_pred eEEEEEEEeCCCCCcHHHHHHHHHhcCCceEEEEEeecC-CEEEEEEEEeecCCCChhhHHHHHHHHH
Q 026479 146 LIFKASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVTLG-GRIRNVLIIAAEKDHSIESVHFLQNALK 212 (238)
Q Consensus 146 ~~v~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~g-~rv~~~f~V~~~~~~~~~~~~~L~~aL~ 212 (238)
..+.+.+.-++|||-|.+++++|-.. +|+..+-.-.+ +.+.-.+.|+.. +.+..+.|.++|.
T Consensus 324 re~~l~V~iPerPGal~~f~~~i~~~--nItef~yr~~~~~~a~v~vgie~~---~~~~~~~l~~~L~ 386 (499)
T TIGR01124 324 REALLAVTIPEQPGSFLKFCELLGNR--NITEFNYRYADRKDAHIFVGVQLS---NPQERQEILARLN 386 (499)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHhhhc--ceEEEEEEecCCCeEEEEEEEEeC---CHHHHHHHHHHHH
Confidence 45778888899999999999999873 55544443322 233333334433 2345566666664
Done!