Query 026479
Match_columns 238
No_of_seqs 229 out of 1564
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 14:33:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026479.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026479hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1am9_A Srebp-1A, protein (ster 99.7 2.1E-17 7.2E-22 122.2 7.2 61 63-123 5-66 (82)
2 4h10_B Circadian locomoter out 99.7 6.7E-17 2.3E-21 116.2 7.0 61 60-120 4-65 (71)
3 4ati_A MITF, microphthalmia-as 99.6 2.2E-16 7.4E-21 124.3 7.1 65 59-123 22-90 (118)
4 1a0a_A BHLH, protein (phosphat 99.6 4.3E-17 1.5E-21 114.9 0.2 52 65-116 3-61 (63)
5 4h10_A ARYL hydrocarbon recept 99.6 2.3E-16 8E-21 114.1 3.7 55 60-114 5-63 (73)
6 1an4_A Protein (upstream stimu 99.6 8.5E-17 2.9E-21 113.7 0.6 52 65-116 6-63 (65)
7 1hlo_A Protein (transcription 99.6 1.4E-15 4.7E-20 111.8 6.4 62 62-123 10-73 (80)
8 1nkp_B MAX protein, MYC proto- 99.6 1.9E-15 6.5E-20 111.7 6.6 58 65-122 3-62 (83)
9 1nkp_A C-MYC, MYC proto-oncoge 99.6 4.9E-15 1.7E-19 110.8 6.8 59 64-122 6-67 (88)
10 3u5v_A Protein MAX, transcript 99.5 2E-14 6.7E-19 104.8 5.3 57 65-121 6-66 (76)
11 1nlw_A MAD protein, MAX dimeri 99.5 4.2E-14 1.4E-18 104.0 7.1 57 66-122 3-62 (80)
12 1mdy_A Protein (MYOD BHLH doma 99.3 6.6E-12 2.3E-16 89.5 6.1 53 64-116 12-66 (68)
13 2ql2_B Neurod1, neurogenic dif 99.3 6.5E-12 2.2E-16 87.4 5.4 53 65-117 3-58 (60)
14 4f3l_A Mclock, circadian locom 99.2 2.3E-11 8E-16 110.8 5.7 58 59-116 7-65 (361)
15 4f3l_B BMAL1B; BHLH, PAS, circ 99.1 3.1E-11 1E-15 111.3 4.8 60 58-117 7-70 (387)
16 4ath_A MITF, microphthalmia-as 99.1 1.2E-10 4.3E-15 85.5 5.8 48 76-123 4-55 (83)
17 2lfh_A DNA-binding protein inh 98.8 7.9E-10 2.7E-14 78.3 1.7 46 69-114 19-67 (68)
18 4aya_A DNA-binding protein inh 98.4 5E-07 1.7E-11 68.2 6.3 49 71-119 32-83 (97)
19 1zpv_A ACT domain protein; str 97.7 0.00027 9.1E-09 51.1 9.9 69 146-217 4-72 (91)
20 1u8s_A Glycine cleavage system 97.6 0.00037 1.3E-08 57.6 10.1 67 147-217 6-72 (192)
21 2nyi_A Unknown protein; protei 97.6 0.00017 5.9E-09 60.1 7.8 69 147-215 5-73 (195)
22 2nyi_A Unknown protein; protei 97.4 0.00038 1.3E-08 58.0 7.5 73 146-219 92-167 (195)
23 2ko1_A CTR148A, GTP pyrophosph 97.3 0.0018 6.1E-08 46.0 9.1 51 146-196 4-54 (88)
24 1u8s_A Glycine cleavage system 97.1 0.0023 7.9E-08 52.7 9.5 74 146-219 92-170 (192)
25 2jhe_A Transcription regulator 95.4 0.085 2.9E-06 41.5 9.0 60 149-214 2-61 (190)
26 3o1l_A Formyltetrahydrofolate 95.4 0.11 3.6E-06 46.4 10.5 73 144-218 19-93 (302)
27 3p96_A Phosphoserine phosphata 95.3 0.052 1.8E-06 49.4 8.3 72 146-219 11-82 (415)
28 2f1f_A Acetolactate synthase i 95.2 0.1 3.5E-06 42.5 8.9 64 148-215 4-69 (164)
29 2pc6_A Probable acetolactate s 95.1 0.13 4.5E-06 41.9 9.4 64 148-215 5-70 (165)
30 3n0v_A Formyltetrahydrofolate 95.0 0.14 4.9E-06 45.1 10.0 69 148-219 9-79 (286)
31 3lou_A Formyltetrahydrofolate 94.7 0.15 5.2E-06 45.1 9.4 73 147-219 10-84 (292)
32 3obi_A Formyltetrahydrofolate 94.5 0.22 7.4E-06 44.0 9.8 71 147-219 6-78 (288)
33 3nrb_A Formyltetrahydrofolate 93.3 0.5 1.7E-05 41.7 9.8 69 147-219 7-77 (287)
34 2fgc_A Acetolactate synthase, 92.6 0.46 1.6E-05 39.7 8.2 64 148-215 30-95 (193)
35 1y7p_A Hypothetical protein AF 90.9 0.37 1.3E-05 41.2 5.8 38 147-184 4-41 (223)
36 2qmx_A Prephenate dehydratase; 81.4 5.7 0.0002 34.8 8.3 60 153-215 206-266 (283)
37 2qmw_A PDT, prephenate dehydra 78.0 8.3 0.00028 33.5 8.2 56 155-214 197-253 (267)
38 3luy_A Probable chorismate mut 76.3 20 0.0007 32.0 10.5 59 156-217 217-276 (329)
39 2f06_A Conserved hypothetical 76.0 13 0.00045 28.2 8.1 42 150-191 75-116 (144)
40 3mwb_A Prephenate dehydratase; 74.8 15 0.00053 32.5 9.2 64 150-216 204-269 (313)
41 2f06_A Conserved hypothetical 72.4 13 0.00044 28.2 7.3 37 147-183 6-42 (144)
42 2re1_A Aspartokinase, alpha an 62.7 24 0.00081 27.7 7.1 33 147-179 103-138 (167)
43 1phz_A Protein (phenylalanine 55.9 23 0.00079 32.9 6.6 60 152-215 39-99 (429)
44 2re1_A Aspartokinase, alpha an 51.2 29 0.001 27.1 5.8 48 148-195 26-75 (167)
45 2dtj_A Aspartokinase; protein- 49.5 54 0.0019 25.9 7.2 48 148-195 16-67 (178)
46 1sc6_A PGDH, D-3-phosphoglycer 47.3 34 0.0012 31.1 6.3 46 150-195 334-379 (404)
47 1ygy_A PGDH, D-3-phosphoglycer 46.5 70 0.0024 29.9 8.5 57 150-208 457-515 (529)
48 2dt9_A Aspartokinase; protein- 44.8 89 0.003 24.2 7.7 49 148-196 17-69 (167)
49 2dtj_A Aspartokinase; protein- 43.3 48 0.0016 26.2 6.0 33 147-179 95-130 (178)
50 1rwu_A Hypothetical UPF0250 pr 40.1 1.1E+02 0.0039 22.7 8.2 62 147-212 36-100 (109)
51 2wt7_A Proto-oncogene protein 37.9 60 0.0021 21.5 4.9 17 72-88 1-17 (63)
52 3mtj_A Homoserine dehydrogenas 37.3 29 0.001 32.1 4.2 33 146-178 358-390 (444)
53 2dt9_A Aspartokinase; protein- 36.8 86 0.003 24.3 6.5 33 147-179 95-130 (167)
54 3dhx_A Methionine import ATP-b 32.0 1.4E+02 0.0049 21.4 8.5 51 146-197 22-73 (106)
55 1ib8_A Conserved protein SP14. 30.8 1E+02 0.0035 24.3 6.0 49 167-216 21-69 (164)
56 4go7_X Aspartokinase; transfer 29.4 1.7E+02 0.0057 23.9 7.2 49 148-196 36-88 (200)
57 3s1t_A Aspartokinase; ACT doma 29.3 1.4E+02 0.0049 23.6 6.7 49 148-196 17-69 (181)
58 3ab4_A Aspartokinase; aspartat 28.5 1.6E+02 0.0055 26.5 7.6 48 148-195 265-316 (421)
59 3k5p_A D-3-phosphoglycerate de 27.4 1.2E+02 0.0041 27.7 6.5 46 148-193 344-389 (416)
60 2jqq_A Conserved oligomeric go 26.7 50 0.0017 27.4 3.4 46 76-122 53-98 (204)
61 3muj_A Transcription factor CO 26.6 89 0.003 24.5 4.7 35 78-112 95-133 (138)
62 3s1t_A Aspartokinase; ACT doma 25.7 78 0.0027 25.2 4.5 32 148-179 97-131 (181)
63 1xkm_B Distinctin chain B; por 25.3 83 0.0028 17.1 3.0 20 99-118 3-22 (26)
64 2qsw_A Methionine import ATP-b 22.7 2E+02 0.007 20.2 9.9 51 146-197 24-75 (100)
65 3p96_A Phosphoserine phosphata 20.9 3.9E+02 0.013 23.3 8.6 66 148-217 102-168 (415)
No 1
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.70 E-value=2.1e-17 Score=122.19 Aligned_cols=61 Identities=25% Similarity=0.426 Sum_probs=56.9
Q ss_pred HHhhhccHHHHHHHHHHHHHHHHHHhccCCC-CCCChhhHHHHHHHHHHHHHHHHHHHhccc
Q 026479 63 AALKNHKEAEKRRRERINSHLNKLRSILSCN-SKLDKASLLARVVQRVRELKEQTIELTEVE 123 (238)
Q Consensus 63 ~~~~~h~~~ER~RR~~in~~~~~Lr~lvP~~-~k~dK~siL~~ai~yik~Lq~~~~~l~~~~ 123 (238)
..+.+|+.+||+||++||++|.+|+++||.. .|+||++||.+||+||++|+.+++.|+++.
T Consensus 5 ~rr~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~ 66 (82)
T 1am9_A 5 EKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQEN 66 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457999999999999999999999999987 899999999999999999999999998764
No 2
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.68 E-value=6.7e-17 Score=116.21 Aligned_cols=61 Identities=31% Similarity=0.455 Sum_probs=54.5
Q ss_pred hhhHHhhhccHHHHHHHHHHHHHHHHHHhccCCC-CCCChhhHHHHHHHHHHHHHHHHHHHh
Q 026479 60 RALAALKNHKEAEKRRRERINSHLNKLRSILSCN-SKLDKASLLARVVQRVRELKEQTIELT 120 (238)
Q Consensus 60 ~~~~~~~~h~~~ER~RR~~in~~~~~Lr~lvP~~-~k~dK~siL~~ai~yik~Lq~~~~~l~ 120 (238)
+....+.+|+.+||+||++||++|.+|++|||.. .|+||++||.+||+||+.||.++.=|+
T Consensus 4 k~~~kR~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~ 65 (71)
T 4h10_B 4 KDKAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLE 65 (71)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hhhHHhhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence 3455678999999999999999999999999964 599999999999999999999887654
No 3
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.64 E-value=2.2e-16 Score=124.30 Aligned_cols=65 Identities=23% Similarity=0.431 Sum_probs=52.3
Q ss_pred hhhhHHhhhccHHHHHHHHHHHHHHHHHHhccCCCC----CCChhhHHHHHHHHHHHHHHHHHHHhccc
Q 026479 59 DRALAALKNHKEAEKRRRERINSHLNKLRSILSCNS----KLDKASLLARVVQRVRELKEQTIELTEVE 123 (238)
Q Consensus 59 ~~~~~~~~~h~~~ER~RR~~in~~~~~Lr~lvP~~~----k~dK~siL~~ai~yik~Lq~~~~~l~~~~ 123 (238)
.+...++.+|+.+||+||++||++|.+|++|||.+. |++|++||.+||+||++||.+++.|+++.
T Consensus 22 ~k~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~ 90 (118)
T 4ati_A 22 AKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLE 90 (118)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456689999999999999999999999999764 78999999999999999999999998764
No 4
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.61 E-value=4.3e-17 Score=114.86 Aligned_cols=52 Identities=27% Similarity=0.464 Sum_probs=47.6
Q ss_pred hhhccHHHHHHHHHHHHHHHHHHhccCCC-------CCCChhhHHHHHHHHHHHHHHHH
Q 026479 65 LKNHKEAEKRRRERINSHLNKLRSILSCN-------SKLDKASLLARVVQRVRELKEQT 116 (238)
Q Consensus 65 ~~~h~~~ER~RR~~in~~~~~Lr~lvP~~-------~k~dK~siL~~ai~yik~Lq~~~ 116 (238)
+.+|+.+||+||++||++|.+|++|||.+ .+++||+||++||+||+.||+++
T Consensus 3 r~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~ 61 (63)
T 1a0a_A 3 RESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG 61 (63)
T ss_dssp TTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHh
Confidence 46999999999999999999999999943 57889999999999999999865
No 5
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.61 E-value=2.3e-16 Score=114.13 Aligned_cols=55 Identities=36% Similarity=0.573 Sum_probs=49.6
Q ss_pred hhhHHhhhccHHHHHHHHHHHHHHHHHHhccCCC----CCCChhhHHHHHHHHHHHHHH
Q 026479 60 RALAALKNHKEAEKRRRERINSHLNKLRSILSCN----SKLDKASLLARVVQRVRELKE 114 (238)
Q Consensus 60 ~~~~~~~~h~~~ER~RR~~in~~~~~Lr~lvP~~----~k~dK~siL~~ai~yik~Lq~ 114 (238)
+...++.+|+.+||+||++||++|.+|++|||.+ .|+||++||++||+||+.|+.
T Consensus 5 k~~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 5 RIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence 3455678999999999999999999999999964 799999999999999999874
No 6
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.60 E-value=8.5e-17 Score=113.73 Aligned_cols=52 Identities=29% Similarity=0.535 Sum_probs=48.2
Q ss_pred hhhccHHHHHHHHHHHHHHHHHHhccCCCC------CCChhhHHHHHHHHHHHHHHHH
Q 026479 65 LKNHKEAEKRRRERINSHLNKLRSILSCNS------KLDKASLLARVVQRVRELKEQT 116 (238)
Q Consensus 65 ~~~h~~~ER~RR~~in~~~~~Lr~lvP~~~------k~dK~siL~~ai~yik~Lq~~~ 116 (238)
+.+|+.+||+||++||++|.+|++|||.+. |++|++||.+||+||+.||++.
T Consensus 6 r~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~ 63 (65)
T 1an4_A 6 RAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN 63 (65)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred HHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 368999999999999999999999999765 7899999999999999999865
No 7
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.59 E-value=1.4e-15 Score=111.78 Aligned_cols=62 Identities=16% Similarity=0.313 Sum_probs=56.5
Q ss_pred hHHhhhccHHHHHHHHHHHHHHHHHHhccCCC--CCCChhhHHHHHHHHHHHHHHHHHHHhccc
Q 026479 62 LAALKNHKEAEKRRRERINSHLNKLRSILSCN--SKLDKASLLARVVQRVRELKEQTIELTEVE 123 (238)
Q Consensus 62 ~~~~~~h~~~ER~RR~~in~~~~~Lr~lvP~~--~k~dK~siL~~ai~yik~Lq~~~~~l~~~~ 123 (238)
...+.+|+..||+||.+||++|..|+++||.. .|++|++||..||+||+.|+.++++|+.+.
T Consensus 10 ~~~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~ 73 (80)
T 1hlo_A 10 ADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDI 73 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34568999999999999999999999999965 699999999999999999999999998753
No 8
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.58 E-value=1.9e-15 Score=111.69 Aligned_cols=58 Identities=17% Similarity=0.381 Sum_probs=53.9
Q ss_pred hhhccHHHHHHHHHHHHHHHHHHhccCC--CCCCChhhHHHHHHHHHHHHHHHHHHHhcc
Q 026479 65 LKNHKEAEKRRRERINSHLNKLRSILSC--NSKLDKASLLARVVQRVRELKEQTIELTEV 122 (238)
Q Consensus 65 ~~~h~~~ER~RR~~in~~~~~Lr~lvP~--~~k~dK~siL~~ai~yik~Lq~~~~~l~~~ 122 (238)
+.+|+..||+||.+||++|..|+++||. ..|++|++||.+||+||+.|+.+++.|+.+
T Consensus 3 R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e 62 (83)
T 1nkp_B 3 RAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQD 62 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999996 479999999999999999999999888765
No 9
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.56 E-value=4.9e-15 Score=110.84 Aligned_cols=59 Identities=17% Similarity=0.267 Sum_probs=53.9
Q ss_pred HhhhccHHHHHHHHHHHHHHHHHHhccCCC---CCCChhhHHHHHHHHHHHHHHHHHHHhcc
Q 026479 64 ALKNHKEAEKRRRERINSHLNKLRSILSCN---SKLDKASLLARVVQRVRELKEQTIELTEV 122 (238)
Q Consensus 64 ~~~~h~~~ER~RR~~in~~~~~Lr~lvP~~---~k~dK~siL~~ai~yik~Lq~~~~~l~~~ 122 (238)
.+..|+..||+||++||++|..|+++||.. .|++|++||.+||+||+.|+.+.+.+..+
T Consensus 6 ~R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~ 67 (88)
T 1nkp_A 6 KRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISE 67 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357899999999999999999999999964 59999999999999999999998887654
No 10
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.49 E-value=2e-14 Score=104.76 Aligned_cols=57 Identities=26% Similarity=0.343 Sum_probs=49.2
Q ss_pred hhhccHHHHHHHHHHHHHHHHHHhccCC---CCCC-ChhhHHHHHHHHHHHHHHHHHHHhc
Q 026479 65 LKNHKEAEKRRRERINSHLNKLRSILSC---NSKL-DKASLLARVVQRVRELKEQTIELTE 121 (238)
Q Consensus 65 ~~~h~~~ER~RR~~in~~~~~Lr~lvP~---~~k~-dK~siL~~ai~yik~Lq~~~~~l~~ 121 (238)
+.+|+..||+||..||++|.+|+.+||. ..|. +|++||..||+||+.|++++++++.
T Consensus 6 R~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~~ 66 (76)
T 3u5v_A 6 RAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERNL 66 (76)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3789999999999999999999999994 3455 7999999999999999999998754
No 11
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.49 E-value=4.2e-14 Score=103.99 Aligned_cols=57 Identities=25% Similarity=0.420 Sum_probs=52.9
Q ss_pred hhccHHHHHHHHHHHHHHHHHHhccCCC---CCCChhhHHHHHHHHHHHHHHHHHHHhcc
Q 026479 66 KNHKEAEKRRRERINSHLNKLRSILSCN---SKLDKASLLARVVQRVRELKEQTIELTEV 122 (238)
Q Consensus 66 ~~h~~~ER~RR~~in~~~~~Lr~lvP~~---~k~dK~siL~~ai~yik~Lq~~~~~l~~~ 122 (238)
..||..||+||..||++|.+|+++||.. .|.+|++||.+|++||+.|+.+.+.+..+
T Consensus 3 ~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e 62 (80)
T 1nlw_A 3 STHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQ 62 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5799999999999999999999999954 58899999999999999999999988765
No 12
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=99.26 E-value=6.6e-12 Score=89.48 Aligned_cols=53 Identities=23% Similarity=0.356 Sum_probs=48.2
Q ss_pred HhhhccHHHHHHHHHHHHHHHHHHhccCC--CCCCChhhHHHHHHHHHHHHHHHH
Q 026479 64 ALKNHKEAEKRRRERINSHLNKLRSILSC--NSKLDKASLLARVVQRVRELKEQT 116 (238)
Q Consensus 64 ~~~~h~~~ER~RR~~in~~~~~Lr~lvP~--~~k~dK~siL~~ai~yik~Lq~~~ 116 (238)
.+..|+..||+|+..||+.|..||.+||. ..|++|+.||..||+||..|++.+
T Consensus 12 rR~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L 66 (68)
T 1mdy_A 12 RRKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALL 66 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred hhhHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 34679999999999999999999999995 369999999999999999999764
No 13
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=99.25 E-value=6.5e-12 Score=87.44 Aligned_cols=53 Identities=25% Similarity=0.347 Sum_probs=47.9
Q ss_pred hhhccHHHHHHHHHHHHHHHHHHhccCCC---CCCChhhHHHHHHHHHHHHHHHHH
Q 026479 65 LKNHKEAEKRRRERINSHLNKLRSILSCN---SKLDKASLLARVVQRVRELKEQTI 117 (238)
Q Consensus 65 ~~~h~~~ER~RR~~in~~~~~Lr~lvP~~---~k~dK~siL~~ai~yik~Lq~~~~ 117 (238)
+..|+..||+|+..||+.|..||.+||.. .|++|..||..||+||..|++.++
T Consensus 3 R~~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 3 RMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 35689999999999999999999999954 489999999999999999998753
No 14
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.15 E-value=2.3e-11 Score=110.76 Aligned_cols=58 Identities=31% Similarity=0.501 Sum_probs=43.3
Q ss_pred hhhhHHhhhccHHHHHHHHHHHHHHHHHHhccC-CCCCCChhhHHHHHHHHHHHHHHHH
Q 026479 59 DRALAALKNHKEAEKRRRERINSHLNKLRSILS-CNSKLDKASLLARVVQRVRELKEQT 116 (238)
Q Consensus 59 ~~~~~~~~~h~~~ER~RR~~in~~~~~Lr~lvP-~~~k~dK~siL~~ai~yik~Lq~~~ 116 (238)
.|...++.+|+.+||+||++||..|.+|++||| ...|+||++||..||+||+.|+...
T Consensus 7 ~~~~~~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~~ 65 (361)
T 4f3l_A 7 DKDKAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKETT 65 (361)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhhc
Confidence 344455689999999999999999999999999 6679999999999999999998654
No 15
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.12 E-value=3.1e-11 Score=111.25 Aligned_cols=60 Identities=35% Similarity=0.545 Sum_probs=50.2
Q ss_pred hhhhhHHhhhccHHHHHHHHHHHHHHHHHHhccC----CCCCCChhhHHHHHHHHHHHHHHHHH
Q 026479 58 EDRALAALKNHKEAEKRRRERINSHLNKLRSILS----CNSKLDKASLLARVVQRVRELKEQTI 117 (238)
Q Consensus 58 ~~~~~~~~~~h~~~ER~RR~~in~~~~~Lr~lvP----~~~k~dK~siL~~ai~yik~Lq~~~~ 117 (238)
..|...++.+|+.+||+||++||..|.+|++||| ...|+||++||..||+|||.|+....
T Consensus 7 ~~~~~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~~~~ 70 (387)
T 4f3l_B 7 QGRIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGATN 70 (387)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHCC--
T ss_pred cchhhhhcccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhcccc
Confidence 3444566789999999999999999999999999 67899999999999999999985443
No 16
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=99.08 E-value=1.2e-10 Score=85.48 Aligned_cols=48 Identities=21% Similarity=0.423 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHhccCCC----CCCChhhHHHHHHHHHHHHHHHHHHHhccc
Q 026479 76 RERINSHLNKLRSILSCN----SKLDKASLLARVVQRVRELKEQTIELTEVE 123 (238)
Q Consensus 76 R~~in~~~~~Lr~lvP~~----~k~dK~siL~~ai~yik~Lq~~~~~l~~~~ 123 (238)
|.+||++|.+|.+|||.+ .|++|++||..||+||++||++++.+.+++
T Consensus 4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~e 55 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLE 55 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999965 379999999999999999999999887664
No 17
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.83 E-value=7.9e-10 Score=78.26 Aligned_cols=46 Identities=20% Similarity=0.363 Sum_probs=41.7
Q ss_pred cHHHHHHHHHHHHHHHHHHhccCCC---CCCChhhHHHHHHHHHHHHHH
Q 026479 69 KEAEKRRRERINSHLNKLRSILSCN---SKLDKASLLARVVQRVRELKE 114 (238)
Q Consensus 69 ~~~ER~RR~~in~~~~~Lr~lvP~~---~k~dK~siL~~ai~yik~Lq~ 114 (238)
++.||+|+..||+.|..||.+||.. .|++|..||..||+||..||.
T Consensus 19 ~erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 19 AEEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp BCCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 4568999999999999999999954 599999999999999999984
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=98.39 E-value=5e-07 Score=68.19 Aligned_cols=49 Identities=18% Similarity=0.251 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHhccCC---CCCCChhhHHHHHHHHHHHHHHHHHHH
Q 026479 71 AEKRRRERINSHLNKLRSILSC---NSKLDKASLLARVVQRVRELKEQTIEL 119 (238)
Q Consensus 71 ~ER~RR~~in~~~~~Lr~lvP~---~~k~dK~siL~~ai~yik~Lq~~~~~l 119 (238)
.||.|-..+|+.|..||.+||. ..|++|..+|..||+||..|+..++.-
T Consensus 32 ~~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~~ 83 (97)
T 4aya_A 32 DPMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDSH 83 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhcC
Confidence 3688989999999999999995 358999999999999999999988763
No 19
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=97.74 E-value=0.00027 Score=51.10 Aligned_cols=69 Identities=10% Similarity=0.219 Sum_probs=55.6
Q ss_pred eEEEEEEEeCCCCCcHHHHHHHHHhcCCceEEEEEeecCCEEEEEEEEeecCCCChhhHHHHHHHHHHHHhh
Q 026479 146 LIFKASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVTLGGRIRNVLIIAAEKDHSIESVHFLQNALKSLLER 217 (238)
Q Consensus 146 ~~v~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~g~rv~~~f~V~~~~~~~~~~~~~L~~aL~~vl~~ 217 (238)
..+.|.+.|.|+||++.+|+.+|.+.|.+|.+.+..+.++.+.-.+.+...+ ....+.|..+|.++-.+
T Consensus 4 ~~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~~~---~~~l~~l~~~L~~~~~~ 72 (91)
T 1zpv_A 4 MKAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDE---KQDFTYLRNEFEAFGQT 72 (91)
T ss_dssp EEEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESS---CCCHHHHHHHHHHHHHH
T ss_pred ceEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEeCC---CCCHHHHHHHHHHHHHH
Confidence 3578999999999999999999999999999999988778777777775543 23567788888766544
No 20
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=97.61 E-value=0.00037 Score=57.56 Aligned_cols=67 Identities=10% Similarity=0.249 Sum_probs=56.0
Q ss_pred EEEEEEEeCCCCCcHHHHHHHHHhcCCceEEEEEeecCCEEEEEEEEeecCCCChhhHHHHHHHHHHHHhh
Q 026479 147 IFKASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVTLGGRIRNVLIIAAEKDHSIESVHFLQNALKSLLER 217 (238)
Q Consensus 147 ~v~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~g~rv~~~f~V~~~~~~~~~~~~~L~~aL~~vl~~ 217 (238)
.+.|.|.|+||||++..|..+|.+.|++|.++++.+.++.+.-.+.|... ......|+++|..+..+
T Consensus 6 ~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~~----~~~~~~l~~~L~~~~~~ 72 (192)
T 1u8s_A 6 HLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGS----PSNITRVETTLPLLGQQ 72 (192)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEEC----HHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEecC----CCCHHHHHHHHHHHHHh
Confidence 46789999999999999999999999999999998888887777877643 24667888888877644
No 21
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=97.59 E-value=0.00017 Score=60.12 Aligned_cols=69 Identities=22% Similarity=0.298 Sum_probs=52.9
Q ss_pred EEEEEEEeCCCCCcHHHHHHHHHhcCCceEEEEEeecCCEEEEEEEEeecCCCChhhHHHHHHHHHHHH
Q 026479 147 IFKASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVTLGGRIRNVLIIAAEKDHSIESVHFLQNALKSLL 215 (238)
Q Consensus 147 ~v~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~g~rv~~~f~V~~~~~~~~~~~~~L~~aL~~vl 215 (238)
.+.|.|.|+||||++..|..+|.++|++|+.|++.+..+.+.-.|.|.............|+++|..++
T Consensus 5 ~~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~m~~~v~~~~~~~~~~~~~l~~~L~~~~ 73 (195)
T 2nyi_A 5 SFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAMIVLVSLNAKDGKLIQSALESALPGFQ 73 (195)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESSSSSHHHHHHHHHHSTTCE
T ss_pred EEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEEEEEEEecCccchhHHHHHHHHHHHHH
Confidence 477999999999999999999999999999999988877765577776443211223566666665544
No 22
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=97.40 E-value=0.00038 Score=57.98 Aligned_cols=73 Identities=11% Similarity=0.005 Sum_probs=54.9
Q ss_pred eEEEEEEEeCCCCCcHHHHHHHHHhcCCceEEEEEeecC--CEEEEEEEEeecCCC-ChhhHHHHHHHHHHHHhhcC
Q 026479 146 LIFKASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVTLG--GRIRNVLIIAAEKDH-SIESVHFLQNALKSLLERSN 219 (238)
Q Consensus 146 ~~v~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~g--~rv~~~f~V~~~~~~-~~~~~~~L~~aL~~vl~~~~ 219 (238)
..+.|+|.|.||||++..|..+|.++|++|.+++..+.+ ++..+.|++...-+. .... ..|+++|..+.++.+
T Consensus 92 ~~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~~~~~~~~~-~~l~~~l~~~a~~l~ 167 (195)
T 2nyi_A 92 REYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSRVAFPFPLY-QEVVTALSRVEEEFG 167 (195)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEEEEEEGGGH-HHHHHHHHHHHHHHT
T ss_pred cEEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEEEEcCCCcc-HHHHHHHHHHHHHcC
Confidence 457899999999999999999999999999999999887 333455555443221 1335 788888887765543
No 23
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=97.29 E-value=0.0018 Score=45.98 Aligned_cols=51 Identities=12% Similarity=0.189 Sum_probs=42.2
Q ss_pred eEEEEEEEeCCCCCcHHHHHHHHHhcCCceEEEEEeecCCEEEEEEEEeec
Q 026479 146 LIFKASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVTLGGRIRNVLIIAAE 196 (238)
Q Consensus 146 ~~v~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~g~rv~~~f~V~~~ 196 (238)
..+.+++.+.|+||+|.+|+.+|.+.|+.|.+.++.+.++.+...|.+...
T Consensus 4 ~~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v~~~ 54 (88)
T 2ko1_A 4 FLAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFVK 54 (88)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEEES
T ss_pred EEEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEEEEC
Confidence 456788999999999999999999999999999998877755555555444
No 24
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=97.14 E-value=0.0023 Score=52.66 Aligned_cols=74 Identities=14% Similarity=0.118 Sum_probs=54.7
Q ss_pred eEEEEEEEeCCCCCcHHHHHHHHHhcCCceEEEEEeecCC----EEEEEEEEeecCC-CChhhHHHHHHHHHHHHhhcC
Q 026479 146 LIFKASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVTLGG----RIRNVLIIAAEKD-HSIESVHFLQNALKSLLERSN 219 (238)
Q Consensus 146 ~~v~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~g~----rv~~~f~V~~~~~-~~~~~~~~L~~aL~~vl~~~~ 219 (238)
..+.|.+.|.|+||++.+|+.+|.+.|++|..+...|.+. +..+.|++...-+ ........|+.+|..+.++.+
T Consensus 92 ~~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 170 (192)
T 1u8s_A 92 YTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVDSGCNLMQLQEEFDALCTALD 170 (192)
T ss_dssp EEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEECTTSCHHHHHHHHHHHHHHHT
T ss_pred ceEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhcccCCccCCCCCEEEEEEEEeCCCCCCHHHHHHHHHHHHHHhC
Confidence 5578999999999999999999999999999999988763 3455566654322 123356788898887765544
No 25
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=95.40 E-value=0.085 Score=41.48 Aligned_cols=60 Identities=20% Similarity=0.380 Sum_probs=44.2
Q ss_pred EEEEEeCCCCCcHHHHHHHHHhcCCceEEEEEeecCCEEEEEEEEeecCCCChhhHHHHHHHHHHH
Q 026479 149 KASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVTLGGRIRNVLIIAAEKDHSIESVHFLQNALKSL 214 (238)
Q Consensus 149 ~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~g~rv~~~f~V~~~~~~~~~~~~~L~~aL~~v 214 (238)
.|+|.|.||+|+|.+|+.+|.+.++++..+++.+. |. +++.... ...+....|..+|..+
T Consensus 2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~-g~----i~~~~~~-~~~~~~~~L~~~l~~i 61 (190)
T 2jhe_A 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPI-GR----IYLNFAE-LEFESFSSLMAEIRRI 61 (190)
T ss_dssp EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETT-TE----EEEEECC-CCHHHHHHHHHHHHHS
T ss_pred EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecC-CE----EEEEEEe-CCHHHHHHHHHHHHcC
Confidence 47889999999999999999999999999999776 33 3344332 2234455666655543
No 26
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=95.39 E-value=0.11 Score=46.42 Aligned_cols=73 Identities=16% Similarity=0.167 Sum_probs=52.4
Q ss_pred CceEEEEEEEeCCCCCcHHHHHHHHHhcCCceEEEEEeec--CCEEEEEEEEeecCCCChhhHHHHHHHHHHHHhhc
Q 026479 144 GTLIFKASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVTL--GGRIRNVLIIAAEKDHSIESVHFLQNALKSLLERS 218 (238)
Q Consensus 144 g~~~v~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~--g~rv~~~f~V~~~~~~~~~~~~~L~~aL~~vl~~~ 218 (238)
|...+.+.+.|+||+|+...|...|.+.|.+|++++-.+. .++++-.+.+..... ......|+++|..+-++.
T Consensus 19 ~~~~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~~~~~--~~~~~~L~~~l~~la~~l 93 (302)
T 3o1l_A 19 GMRTFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIRADTL--PFDLDGFREAFTPIAEEF 93 (302)
T ss_dssp CCCEEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEEGGGS--SSCHHHHHHHHHHHHHHH
T ss_pred ccceEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEecCCC--CCCHHHHHHHHHHHHHHh
Confidence 3445789999999999999999999999999999997754 566444444433221 235678888876554443
No 27
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=95.28 E-value=0.052 Score=49.37 Aligned_cols=72 Identities=13% Similarity=0.241 Sum_probs=55.5
Q ss_pred eEEEEEEEeCCCCCcHHHHHHHHHhcCCceEEEEEeecCCEEEEEEEEeecCCCChhhHHHHHHHHHHHHhhcC
Q 026479 146 LIFKASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVTLGGRIRNVLIIAAEKDHSIESVHFLQNALKSLLERSN 219 (238)
Q Consensus 146 ~~v~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~g~rv~~~f~V~~~~~~~~~~~~~L~~aL~~vl~~~~ 219 (238)
..+.|.+.|+||||+...|..+|.++|.+|++++-...++++.-...+..... ......|+.+|..+-++.+
T Consensus 11 ~~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~~f~~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~ 82 (415)
T 3p96_A 11 VSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIRHRLTLGVLVCCPAD--VADGPALRHDVEAAIRKVG 82 (415)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEETTEEEEEEEEEECHH--HHTSHHHHHHHHHHHHHTT
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEECCEeEEEEEEEecCC--cCCHHHHHHHHHHHHHHcC
Confidence 35789999999999999999999999999999999999998766666654321 1133678888776544433
No 28
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=95.17 E-value=0.1 Score=42.48 Aligned_cols=64 Identities=14% Similarity=0.126 Sum_probs=50.9
Q ss_pred EEEEEEeCCCCCcHHHHHHHHHhcCCceEEEEEeecC--CEEEEEEEEeecCCCChhhHHHHHHHHHHHH
Q 026479 148 FKASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVTLG--GRIRNVLIIAAEKDHSIESVHFLQNALKSLL 215 (238)
Q Consensus 148 v~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~g--~rv~~~f~V~~~~~~~~~~~~~L~~aL~~vl 215 (238)
..+++.++++||+|.+|+.+|.+.|++|.+.++.+.. +...-+|.+. .+ ...++.|...|.++.
T Consensus 4 ~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~--~d--~~~leqI~kqL~Kl~ 69 (164)
T 2f1f_A 4 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTV--GD--EKVLEQIEKQLHKLV 69 (164)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEE--SC--HHHHHHHHHHHHHST
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEe--cc--HHHHHHHHHHHcCCC
Confidence 4678889999999999999999999999999987544 5566666775 21 456778888888765
No 29
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=95.12 E-value=0.13 Score=41.92 Aligned_cols=64 Identities=16% Similarity=0.149 Sum_probs=51.4
Q ss_pred EEEEEEeCCCCCcHHHHHHHHHhcCCceEEEEEeecC--CEEEEEEEEeecCCCChhhHHHHHHHHHHHH
Q 026479 148 FKASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVTLG--GRIRNVLIIAAEKDHSIESVHFLQNALKSLL 215 (238)
Q Consensus 148 v~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~g--~rv~~~f~V~~~~~~~~~~~~~L~~aL~~vl 215 (238)
..+++..+++||+|.+|+..|.+.|++|.+..+.... +...-+|.|... ...++.|...|.+++
T Consensus 5 ~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~~d----~~~leql~kQL~Kl~ 70 (165)
T 2pc6_A 5 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGP----DEIVEQITKQLNKLI 70 (165)
T ss_dssp EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEEC----HHHHHHHHHHHHHST
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEecc----HHHHHHHHHHhcCCC
Confidence 5678889999999999999999999999999986543 566667777532 456778888888765
No 30
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=94.98 E-value=0.14 Score=45.12 Aligned_cols=69 Identities=9% Similarity=-0.044 Sum_probs=50.9
Q ss_pred EEEEEEeCCCCCcHHHHHHHHHhcCCceEEEEEe--ecCCEEEEEEEEeecCCCChhhHHHHHHHHHHHHhhcC
Q 026479 148 FKASLCCEDRSDLLPDIIEILKSLHLKTLKSEMV--TLGGRIRNVLIIAAEKDHSIESVHFLQNALKSLLERSN 219 (238)
Q Consensus 148 v~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Is--t~g~rv~~~f~V~~~~~~~~~~~~~L~~aL~~vl~~~~ 219 (238)
+.+.+.|+||+|+...|...|.+.|.+|.+++-. ...++++-.+.+.... ......|+++|..+-++..
T Consensus 9 ~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~---~~~~~~L~~~f~~la~~l~ 79 (286)
T 3n0v_A 9 WILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFRQPD---DFDEAGFRAGLAERSEAFG 79 (286)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCS---SCCHHHHHHHHHHHHGGGT
T ss_pred EEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEecCC---CCCHHHHHHHHHHHHHHcC
Confidence 6789999999999999999999999999999977 3456644434443322 2456788888876544443
No 31
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=94.68 E-value=0.15 Score=45.11 Aligned_cols=73 Identities=16% Similarity=0.235 Sum_probs=50.2
Q ss_pred EEEEEEEeCCCCCcHHHHHHHHHhcCCceEEEEEe--ecCCEEEEEEEEeecCCCChhhHHHHHHHHHHHHhhcC
Q 026479 147 IFKASLCCEDRSDLLPDIIEILKSLHLKTLKSEMV--TLGGRIRNVLIIAAEKDHSIESVHFLQNALKSLLERSN 219 (238)
Q Consensus 147 ~v~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Is--t~g~rv~~~f~V~~~~~~~~~~~~~L~~aL~~vl~~~~ 219 (238)
.+.+.+.|+||+|+...|...|.+.|.+|.+++-. ...++++-.+.+.............|+++|..+-++.+
T Consensus 10 ~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~~~~~L~~~f~~la~~~~ 84 (292)
T 3lou_A 10 QFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHATDDADALRVDALRREFEPIAERFR 84 (292)
T ss_dssp EEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEECC----CCHHHHHHHHHHHHHHHT
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEEEEccCcccCCCHHHHHHHHHHHHHhcC
Confidence 46789999999999999999999999999999977 34565443333333200102345778888765544433
No 32
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=94.47 E-value=0.22 Score=44.02 Aligned_cols=71 Identities=14% Similarity=0.242 Sum_probs=51.8
Q ss_pred EEEEEEEeCCCCCcHHHHHHHHHhcCCceEEEEEe--ecCCEEEEEEEEeecCCCChhhHHHHHHHHHHHHhhcC
Q 026479 147 IFKASLCCEDRSDLLPDIIEILKSLHLKTLKSEMV--TLGGRIRNVLIIAAEKDHSIESVHFLQNALKSLLERSN 219 (238)
Q Consensus 147 ~v~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Is--t~g~rv~~~f~V~~~~~~~~~~~~~L~~aL~~vl~~~~ 219 (238)
.+.+.+.|+||+|+...|...|.+.|.+|.+++-. ...++++-.+.+..... ......|+++|..+-++..
T Consensus 6 ~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~--~~~~~~L~~~f~~la~~~~ 78 (288)
T 3obi_A 6 QYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAK--VIPLASLRTGFGVIAAKFT 78 (288)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEESSC--CCCHHHHHHHHHHHHHHTT
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEcCCC--CCCHHHHHHHHHHHHHHcC
Confidence 46789999999999999999999999999999974 34566544444443321 2346788888876544443
No 33
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=93.28 E-value=0.5 Score=41.67 Aligned_cols=69 Identities=14% Similarity=0.244 Sum_probs=48.0
Q ss_pred EEEEEEEeCCCCCcHHHHHHHHHhcCCceEEEEEe--ecCCEEEEEEEEeecCCCChhhHHHHHHHHHHHHhhcC
Q 026479 147 IFKASLCCEDRSDLLPDIIEILKSLHLKTLKSEMV--TLGGRIRNVLIIAAEKDHSIESVHFLQNALKSLLERSN 219 (238)
Q Consensus 147 ~v~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Is--t~g~rv~~~f~V~~~~~~~~~~~~~L~~aL~~vl~~~~ 219 (238)
.+.+.+.|+||+|+...|...|.++|.+|++++-. ...++++-...+.... .....|+++|..+-++..
T Consensus 7 ~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~----~~~~~L~~~f~~la~~~~ 77 (287)
T 3nrb_A 7 QYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSVEIPV----AGVNDFNSAFGKVVEKYN 77 (287)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCC-------CHHHHHHHHHHGGGT
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEEEEEEEcCC----CCHHHHHHHHHHHHHHcC
Confidence 46789999999999999999999999999999975 3456544333333221 123477788765544443
No 34
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=92.62 E-value=0.46 Score=39.71 Aligned_cols=64 Identities=8% Similarity=0.184 Sum_probs=49.9
Q ss_pred EEEEEEeCCCCCcHHHHHHHHHhcCCceEEEEEeec-C-CEEEEEEEEeecCCCChhhHHHHHHHHHHHH
Q 026479 148 FKASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVTL-G-GRIRNVLIIAAEKDHSIESVHFLQNALKSLL 215 (238)
Q Consensus 148 v~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~-g-~rv~~~f~V~~~~~~~~~~~~~L~~aL~~vl 215 (238)
..|.+..+++||.|.+|+..|...|++|.+-.+... + +...-+++|... +..++.|...|.+++
T Consensus 30 ~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~----e~~ieqL~kQL~KLi 95 (193)
T 2fgc_A 30 HLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGD----DKTIEQIEKQAYKLV 95 (193)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEEC----TTHHHHHHHHHTTST
T ss_pred EEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECC----HHHHHHHHHHhcCcC
Confidence 568888899999999999999999999999888643 3 556666677544 346678888887754
No 35
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Probab=90.90 E-value=0.37 Score=41.15 Aligned_cols=38 Identities=11% Similarity=0.126 Sum_probs=30.6
Q ss_pred EEEEEEEeCCCCCcHHHHHHHHHhcCCceEEEEEeecC
Q 026479 147 IFKASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVTLG 184 (238)
Q Consensus 147 ~v~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~g 184 (238)
.+.+.|.+.||+|+|.+|+.+|.+.+.+|.+.+..+..
T Consensus 4 ~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~ 41 (223)
T 1y7p_A 4 LRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIK 41 (223)
T ss_dssp CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECC
T ss_pred eEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccc
Confidence 46788899999999999999999999999999988854
No 36
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=81.43 E-value=5.7 Score=34.80 Aligned_cols=60 Identities=12% Similarity=0.017 Sum_probs=45.3
Q ss_pred EeCCCCCcHHHHHHHHHhcCCceEEEEEeecCC-EEEEEEEEeecCCCChhhHHHHHHHHHHHH
Q 026479 153 CCEDRSDLLPDIIEILKSLHLKTLKSEMVTLGG-RIRNVLIIAAEKDHSIESVHFLQNALKSLL 215 (238)
Q Consensus 153 ~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~g~-rv~~~f~V~~~~~~~~~~~~~L~~aL~~vl 215 (238)
...++||.|.+++..|...|+++..-..-...+ ...+.|+|..++.... ..++++|.++-
T Consensus 206 ~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfvD~eg~~~d---~~v~~aL~~L~ 266 (283)
T 2qmx_A 206 ALPNEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYADFIGHRED---QNVHNALENLR 266 (283)
T ss_dssp EEECCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEEEEESCTTS---HHHHHHHHHHH
T ss_pred EcCCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEEEEEecCCCc---HHHHHHHHHHH
Confidence 346899999999999999999999998776654 4789999987754222 34566665543
No 37
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=78.04 E-value=8.3 Score=33.50 Aligned_cols=56 Identities=13% Similarity=0.148 Sum_probs=42.8
Q ss_pred CCCCCcHHHHHHHHHhcCCceEEEEEeecCC-EEEEEEEEeecCCCChhhHHHHHHHHHHH
Q 026479 155 EDRSDLLPDIIEILKSLHLKTLKSEMVTLGG-RIRNVLIIAAEKDHSIESVHFLQNALKSL 214 (238)
Q Consensus 155 ~~r~GlL~~Il~aLe~lgL~V~~A~Ist~g~-rv~~~f~V~~~~~~~~~~~~~L~~aL~~v 214 (238)
.++||.|.+++..|...|+++..-..-...+ ...+.|+|..+ .... ..++++|.++
T Consensus 197 ~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~e-~~~d---~~v~~aL~~L 253 (267)
T 2qmw_A 197 HDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQAD-SAIT---TDIKKVIAIL 253 (267)
T ss_dssp SCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEES-CCSC---HHHHHHHHHH
T ss_pred CCCcChHHHHHHHHHHcCCCeeEEEEeecCCCCccEEEEEEEe-cCCc---HHHHHHHHHH
Confidence 6899999999999999999999988766654 47789999877 4322 2455555544
No 38
>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}
Probab=76.28 E-value=20 Score=31.95 Aligned_cols=59 Identities=12% Similarity=0.194 Sum_probs=44.2
Q ss_pred CCCCcHHHHHHHHHhcCCceEEEEEeecCC-EEEEEEEEeecCCCChhhHHHHHHHHHHHHhh
Q 026479 156 DRSDLLPDIIEILKSLHLKTLKSEMVTLGG-RIRNVLIIAAEKDHSIESVHFLQNALKSLLER 217 (238)
Q Consensus 156 ~r~GlL~~Il~aLe~lgL~V~~A~Ist~g~-rv~~~f~V~~~~~~~~~~~~~L~~aL~~vl~~ 217 (238)
++||.|.++|..|...|++...-..-...+ ...+.|+|..++.... ..+++||.++-..
T Consensus 217 ~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~eg~~~d---~~v~~AL~~L~~~ 276 (329)
T 3luy_A 217 TGPGVLANLLDVFRDAGLNMTSFISRPIKGRTGTYSFIVTLDAAPWE---ERFRDALVEIAEH 276 (329)
T ss_dssp CSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEEEEESSCTTS---HHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHCCcceEEEEeeECCCCCccEEEEEEEeCCcCC---HHHHHHHHHHHHh
Confidence 689999999999999999999988766554 5788999977653222 3566666655433
No 39
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=76.04 E-value=13 Score=28.18 Aligned_cols=42 Identities=10% Similarity=0.108 Sum_probs=30.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHhcCCceEEEEEeecCCEEEEEE
Q 026479 150 ASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVTLGGRIRNVL 191 (238)
Q Consensus 150 I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~g~rv~~~f 191 (238)
+-+.-+++||.+.+++.+|.+.|+.|...-.+..+++...+|
T Consensus 75 v~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~~~~~~~~~i 116 (144)
T 2f06_A 75 VGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVI 116 (144)
T ss_dssp EEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEE
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEccCCcEEEEE
Confidence 444567999999999999999999997655442345544333
No 40
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=74.82 E-value=15 Score=32.50 Aligned_cols=64 Identities=17% Similarity=0.129 Sum_probs=45.0
Q ss_pred EEEEeC-CCCCcHHHHHHHHHhcCCceEEEEEeecCC-EEEEEEEEeecCCCChhhHHHHHHHHHHHHh
Q 026479 150 ASLCCE-DRSDLLPDIIEILKSLHLKTLKSEMVTLGG-RIRNVLIIAAEKDHSIESVHFLQNALKSLLE 216 (238)
Q Consensus 150 I~i~c~-~r~GlL~~Il~aLe~lgL~V~~A~Ist~g~-rv~~~f~V~~~~~~~~~~~~~L~~aL~~vl~ 216 (238)
|-+..+ ++||.|.++|..|...|+++..-..-...+ ...+.|+|..+..... ..++++|.++-.
T Consensus 204 l~f~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~eg~~~d---~~v~~aL~~L~~ 269 (313)
T 3mwb_A 204 VVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSIDADGHATD---SRVADALAGLHR 269 (313)
T ss_dssp EEEECSSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTSEEEEEEEESCTTS---HHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHCCccEEEEEEeecCCCCccEEEEEEEeCCCCc---HHHHHHHHHHHH
Confidence 334454 799999999999999999999888765543 4578899987653222 245566555433
No 41
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=72.43 E-value=13 Score=28.20 Aligned_cols=37 Identities=16% Similarity=0.180 Sum_probs=31.3
Q ss_pred EEEEEEEeCCCCCcHHHHHHHHHhcCCceEEEEEeec
Q 026479 147 IFKASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVTL 183 (238)
Q Consensus 147 ~v~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~ 183 (238)
...+++.-+++||.+.+|+.+|.+.|+.|..-.+...
T Consensus 6 ~~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~ 42 (144)
T 2f06_A 6 AKQLSIFLENKSGRLTEVTEVLAKENINLSALCIAEN 42 (144)
T ss_dssp EEEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEEC
T ss_pred EEEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEec
Confidence 3567778899999999999999999999988766543
No 42
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=62.66 E-value=24 Score=27.67 Aligned_cols=33 Identities=12% Similarity=0.061 Sum_probs=27.7
Q ss_pred EEEEEEEeCC---CCCcHHHHHHHHHhcCCceEEEE
Q 026479 147 IFKASLCCED---RSDLLPDIIEILKSLHLKTLKSE 179 (238)
Q Consensus 147 ~v~I~i~c~~---r~GlL~~Il~aLe~lgL~V~~A~ 179 (238)
...|.+.+.. +||++.+++++|.+.|+.|....
T Consensus 103 ~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~is 138 (167)
T 2re1_A 103 VCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMIS 138 (167)
T ss_dssp EEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCEEE
T ss_pred EEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEEEE
Confidence 3567777765 89999999999999999998843
No 43
>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} SCOP: d.58.18.3 d.178.1.1 PDB: 2phm_A
Probab=55.91 E-value=23 Score=32.88 Aligned_cols=60 Identities=10% Similarity=0.142 Sum_probs=42.7
Q ss_pred EEeCCCCCcHHHHHHHHHhcCCceEEEEEeecC-CEEEEEEEEeecCCCChhhHHHHHHHHHHHH
Q 026479 152 LCCEDRSDLLPDIIEILKSLHLKTLKSEMVTLG-GRIRNVLIIAAEKDHSIESVHFLQNALKSLL 215 (238)
Q Consensus 152 i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~g-~rv~~~f~V~~~~~~~~~~~~~L~~aL~~vl 215 (238)
+...++||.|.+++..|...|+++.+-..-... ....+.|+|... .... ..++++|.++-
T Consensus 39 Fsl~n~pGAL~~~L~~Fa~~gINLTkIESRPsk~~~~eY~FfVD~e-h~~d---~~v~~AL~eL~ 99 (429)
T 1phz_A 39 FSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFTYLD-KRTK---PVLGSIIKSLR 99 (429)
T ss_dssp EEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEECBC-GGGH---HHHHHHHHHHH
T ss_pred EEeCCCccHHHHHHHHHHHcCCceEEEEeeecCCCCccEEEEEEEe-eCCC---HHHHHHHHHHH
Confidence 344678999999999999999999988876654 346788999766 3222 33455554443
No 44
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=51.23 E-value=29 Score=27.12 Aligned_cols=48 Identities=6% Similarity=0.018 Sum_probs=33.6
Q ss_pred EEEEEEe-CCCCCcHHHHHHHHHhcCCceEEEEEeec-CCEEEEEEEEee
Q 026479 148 FKASLCC-EDRSDLLPDIIEILKSLHLKTLKSEMVTL-GGRIRNVLIIAA 195 (238)
Q Consensus 148 v~I~i~c-~~r~GlL~~Il~aLe~lgL~V~~A~Ist~-g~rv~~~f~V~~ 195 (238)
.+|.|.. ++++|.+.+|+.+|.+.|+.|.....+.. +|...-+|+|..
T Consensus 26 ~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s~~~~g~~~isf~v~~ 75 (167)
T 2re1_A 26 ARINVRGVPDKPGVAYQILGAVADANIEVDMIIQNVGSEGTTDFSFTVPR 75 (167)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC----CEEEEEEEECG
T ss_pred EEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcCCCCCCeeEEEEEEec
Confidence 4666663 78999999999999999999877654321 344445566644
No 45
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=49.52 E-value=54 Score=25.89 Aligned_cols=48 Identities=8% Similarity=0.036 Sum_probs=32.7
Q ss_pred EEEEEE-eCCCCCcHHHHHHHHHhcCCceEEEEEeec---CCEEEEEEEEee
Q 026479 148 FKASLC-CEDRSDLLPDIIEILKSLHLKTLKSEMVTL---GGRIRNVLIIAA 195 (238)
Q Consensus 148 v~I~i~-c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~---g~rv~~~f~V~~ 195 (238)
.+|+|. -++++|.+.+|+.+|.+.|+.|.....++. ++...-.|.+..
T Consensus 16 ~~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s~~~~~~~~~~isf~v~~ 67 (178)
T 2dtj_A 16 AKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTCPR 67 (178)
T ss_dssp EEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEEEEEEH
T ss_pred EEEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcCCCCCCCCceEEEEEEcc
Confidence 455653 478999999999999999977766554443 223333466644
No 46
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*
Probab=47.35 E-value=34 Score=31.08 Aligned_cols=46 Identities=17% Similarity=0.085 Sum_probs=38.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHhcCCceEEEEEeecCCEEEEEEEEee
Q 026479 150 ASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVTLGGRIRNVLIIAA 195 (238)
Q Consensus 150 I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~g~rv~~~f~V~~ 195 (238)
+-+.-.++||.+.+|..+|-+.|++|....+.+-|+...-++-+..
T Consensus 334 l~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r~g~~A~~vidvD~ 379 (404)
T 1sc6_A 334 LMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDIEA 379 (404)
T ss_dssp EEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEEEEEEC
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCCCHHHhhccCCCCEEEEEEEcCC
Confidence 4455689999999999999999999999999998888766666543
No 47
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*
Probab=46.55 E-value=70 Score=29.93 Aligned_cols=57 Identities=14% Similarity=0.130 Sum_probs=41.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHhcCCceEEEEEeec--CCEEEEEEEEeecCCCChhhHHHHH
Q 026479 150 ASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVTL--GGRIRNVLIIAAEKDHSIESVHFLQ 208 (238)
Q Consensus 150 I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~--g~rv~~~f~V~~~~~~~~~~~~~L~ 208 (238)
+-+.-.|+||.+.+|...|-+.|++|-+.++... ++..+-++.+ ...-..+.+.+|+
T Consensus 457 l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~~~a~~~i~v--d~~~~~~~l~~l~ 515 (529)
T 1ygy_A 457 LIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRL--DQDVPDDVRTAIA 515 (529)
T ss_dssp EEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEE--SSCCCHHHHHHHH
T ss_pred EEEEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCCCCEEEEEEEE--CCCCCHHHHHHHh
Confidence 4556789999999999999999999999999775 4555555555 3333344444544
No 48
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=44.81 E-value=89 Score=24.19 Aligned_cols=49 Identities=8% Similarity=0.049 Sum_probs=33.7
Q ss_pred EEEEEEe-CCCCCcHHHHHHHHHhcCCceEEEEEeec---CCEEEEEEEEeec
Q 026479 148 FKASLCC-EDRSDLLPDIIEILKSLHLKTLKSEMVTL---GGRIRNVLIIAAE 196 (238)
Q Consensus 148 v~I~i~c-~~r~GlL~~Il~aLe~lgL~V~~A~Ist~---g~rv~~~f~V~~~ 196 (238)
..|.+.. ++++|.+.+|+.+|.+.|+.|.....+.. .|..--.|+|...
T Consensus 17 a~Itv~g~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~~~ 69 (167)
T 2dt9_A 17 AQIGLIGIPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVKKD 69 (167)
T ss_dssp EEEEEEEEECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEEGG
T ss_pred EEEEEecCCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEehH
Confidence 4455553 77899999999999999998876543322 2344556777543
No 49
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=43.29 E-value=48 Score=26.22 Aligned_cols=33 Identities=15% Similarity=0.229 Sum_probs=27.0
Q ss_pred EEEEEEEeC---CCCCcHHHHHHHHHhcCCceEEEE
Q 026479 147 IFKASLCCE---DRSDLLPDIIEILKSLHLKTLKSE 179 (238)
Q Consensus 147 ~v~I~i~c~---~r~GlL~~Il~aLe~lgL~V~~A~ 179 (238)
..+|.+.+. +.||++.+++++|.+.|+.|....
T Consensus 95 ~a~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~is 130 (178)
T 2dtj_A 95 VGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELIS 130 (178)
T ss_dssp EEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE
T ss_pred eEEEEEEcCCcccCccHHHHHHHHHHHCCCCEEEEE
Confidence 356777765 578999999999999999998743
No 50
>1rwu_A Hypothetical UPF0250 protein YBED; mixed alpha-beta fold, structural genomics, protein structure initiative, PSI; NMR {Escherichia coli} SCOP: d.58.54.1
Probab=40.06 E-value=1.1e+02 Score=22.67 Aligned_cols=62 Identities=18% Similarity=0.237 Sum_probs=45.4
Q ss_pred EEEEEEEeCCCCCcHHHHHHHHHhc---CCceEEEEEeecCCEEEEEEEEeecCCCChhhHHHHHHHHH
Q 026479 147 IFKASLCCEDRSDLLPDIIEILKSL---HLKTLKSEMVTLGGRIRNVLIIAAEKDHSIESVHFLQNALK 212 (238)
Q Consensus 147 ~v~I~i~c~~r~GlL~~Il~aLe~l---gL~V~~A~Ist~g~rv~~~f~V~~~~~~~~~~~~~L~~aL~ 212 (238)
.+.+++.....+++...|.++++.. +.++ ..+-|.-|-.+--++.|.+. +.+.+..|-++|.
T Consensus 36 ~y~~KvIG~a~~~~~~~V~~vv~~~~p~d~~~-~~r~Ss~GkY~Svtv~v~v~---S~eQv~aiY~~L~ 100 (109)
T 1rwu_A 36 PFTYKVMGQALPELVDQVVEVVQRHAPGDYTP-TVKPSSKGNYHSVSITINAT---HIEQVETLYEELG 100 (109)
T ss_dssp CEEEEEEEECCTTHHHHHHHHHHHHSSSCCCE-EEEESSCSSEEEEEEEECCS---SHHHHHHHHHHHS
T ss_pred CceEEEEEECcHHHHHHHHHHHHHhCCCCCCc-eecCCCCCeEEEEEEEEEEC---CHHHHHHHHHHHh
Confidence 4678888999999999999999998 6776 55777777766555555444 3566666666654
No 51
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=37.88 E-value=60 Score=21.53 Aligned_cols=17 Identities=29% Similarity=0.427 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHh
Q 026479 72 EKRRRERINSHLNKLRS 88 (238)
Q Consensus 72 ER~RR~~in~~~~~Lr~ 88 (238)
||++|.+...++++-++
T Consensus 1 Ekr~rrrerNR~AA~rc 17 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKC 17 (63)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHH
Confidence 34555555555555553
No 52
>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}
Probab=37.30 E-value=29 Score=32.11 Aligned_cols=33 Identities=24% Similarity=0.251 Sum_probs=28.6
Q ss_pred eEEEEEEEeCCCCCcHHHHHHHHHhcCCceEEE
Q 026479 146 LIFKASLCCEDRSDLLPDIIEILKSLHLKTLKS 178 (238)
Q Consensus 146 ~~v~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A 178 (238)
..+++++.+.|+||+|.+|..+|-+.++.|-+.
T Consensus 358 ~~yy~r~~~~d~~gvl~~i~~~~~~~~isi~~~ 390 (444)
T 3mtj_A 358 TAYYLRLRAFDRPGVLADITRILADSSISIDAM 390 (444)
T ss_dssp EEEEEEEEEC-CCHHHHHHHHHHHHTTCCEEEE
T ss_pred eeeEEEEEecCcccHHHHHHHHHHhcCCceeEE
Confidence 347899999999999999999999999998664
No 53
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=36.84 E-value=86 Score=24.26 Aligned_cols=33 Identities=12% Similarity=0.080 Sum_probs=26.8
Q ss_pred EEEEEEEeCC---CCCcHHHHHHHHHhcCCceEEEE
Q 026479 147 IFKASLCCED---RSDLLPDIIEILKSLHLKTLKSE 179 (238)
Q Consensus 147 ~v~I~i~c~~---r~GlL~~Il~aLe~lgL~V~~A~ 179 (238)
..+|.+.+.. .||++.+++++|.+.|+.|....
T Consensus 95 ~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is 130 (167)
T 2dt9_A 95 IAKVSIVGVGLASTPEVPAKMFQAVASTGANIEMIA 130 (167)
T ss_dssp EEEEEEEESSGGGSTHHHHHHHHHHHHTTCCCCEEE
T ss_pred EEEEEEECCCcccCcCHHHHHHHHHHHCCCCEEEEE
Confidence 3567777765 89999999999999999995443
No 54
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=31.96 E-value=1.4e+02 Score=21.45 Aligned_cols=51 Identities=10% Similarity=0.221 Sum_probs=35.6
Q ss_pred eEEEEEEEeCC-CCCcHHHHHHHHHhcCCceEEEEEeecCCEEEEEEEEeecC
Q 026479 146 LIFKASLCCED-RSDLLPDIIEILKSLHLKTLKSEMVTLGGRIRNVLIIAAEK 197 (238)
Q Consensus 146 ~~v~I~i~c~~-r~GlL~~Il~aLe~lgL~V~~A~Ist~g~rv~~~f~V~~~~ 197 (238)
..+.+.+..+. ..-+++.+...+ ...++|+.++|..+++..+-.+++.-.+
T Consensus 22 ~lvrL~f~g~~~~~PiIs~l~~~~-~v~vnIL~g~I~~i~~~~~G~L~v~l~G 73 (106)
T 3dhx_A 22 PMLRLEFTGQSVDAPLLSETARRF-NVNNNIISAQMDYAGGVKFGIMLTEMHG 73 (106)
T ss_dssp EEEEEEEEEECTTCCHHHHHHHHS-CCEEEEEEEEEEEETTEEEEEEEEEEES
T ss_pred eEEEEEEcCCccChhHHHHHHHHH-CCCEEEEEEEeEEECCeeEEEEEEEEeC
Confidence 44566655443 234555554443 3557899999999999999999998775
No 55
>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} SCOP: b.38.2.1 d.52.4.1
Probab=30.76 E-value=1e+02 Score=24.35 Aligned_cols=49 Identities=8% Similarity=0.250 Sum_probs=37.9
Q ss_pred HHHhcCCceEEEEEeecCCEEEEEEEEeecCCCChhhHHHHHHHHHHHHh
Q 026479 167 ILKSLHLKTLKSEMVTLGGRIRNVLIIAAEKDHSIESVHFLQNALKSLLE 216 (238)
Q Consensus 167 aLe~lgL~V~~A~Ist~g~rv~~~f~V~~~~~~~~~~~~~L~~aL~~vl~ 216 (238)
++++ |+++....+..-+....-.+++...++-..+.+..+.++|..+|+
T Consensus 21 ~~~~-g~eLvdve~~~~g~~~~LrV~ID~~~gi~lddC~~vSr~is~~LD 69 (164)
T 1ib8_A 21 VIEA-PFELVDIEYGKIGSDMILSIFVDKPEGITLNDTADLTEMISPVLD 69 (164)
T ss_dssp HHCS-SSEEEEEEEEEETTEEEEEEEEECSSCCCHHHHHHHHHHHGGGTT
T ss_pred HHcC-CcEEEEEEEEecCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 4456 999999999887776555566655544457888999999999998
No 56
>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X
Probab=29.38 E-value=1.7e+02 Score=23.90 Aligned_cols=49 Identities=6% Similarity=0.098 Sum_probs=33.6
Q ss_pred EEEEEE-eCCCCCcHHHHHHHHHhcCCceEEEE--EeecC-CEEEEEEEEeec
Q 026479 148 FKASLC-CEDRSDLLPDIIEILKSLHLKTLKSE--MVTLG-GRIRNVLIIAAE 196 (238)
Q Consensus 148 v~I~i~-c~~r~GlL~~Il~aLe~lgL~V~~A~--Ist~g-~rv~~~f~V~~~ 196 (238)
.+|.|. .+++||++.+|+.+|.+.|+.|---. ++..+ +....+|.+...
T Consensus 36 a~Iti~g~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv~~~ 88 (200)
T 4go7_X 36 AKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRD 88 (200)
T ss_dssp EEEEEEEEECSTTHHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEEEGG
T ss_pred EEEEEecCCCCccHHHHHHHHHHHhCcceEEEeeccccccccceEEEEecchh
Confidence 456555 58899999999999999988776543 33333 355556776544
No 57
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=29.26 E-value=1.4e+02 Score=23.59 Aligned_cols=49 Identities=6% Similarity=0.051 Sum_probs=33.8
Q ss_pred EEEEEE-eCCCCCcHHHHHHHHHhcCCceEEEEEeec---CCEEEEEEEEeec
Q 026479 148 FKASLC-CEDRSDLLPDIIEILKSLHLKTLKSEMVTL---GGRIRNVLIIAAE 196 (238)
Q Consensus 148 v~I~i~-c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~---g~rv~~~f~V~~~ 196 (238)
.+|.|. -.+++|.+.+|+.+|.+.|+.|..-.-+.. .+..--+|+|...
T Consensus 17 ~~Iti~~~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~~~ 69 (181)
T 3s1t_A 17 AKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRD 69 (181)
T ss_dssp EEEEEEEEESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEETT
T ss_pred EEEEEecCCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEehh
Confidence 344443 477899999999999999998875543222 4555566777544
No 58
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=28.50 E-value=1.6e+02 Score=26.50 Aligned_cols=48 Identities=8% Similarity=0.065 Sum_probs=35.0
Q ss_pred EEEEEE-eCCCCCcHHHHHHHHHhcCCceEEEEEeec---CCEEEEEEEEee
Q 026479 148 FKASLC-CEDRSDLLPDIIEILKSLHLKTLKSEMVTL---GGRIRNVLIIAA 195 (238)
Q Consensus 148 v~I~i~-c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~---g~rv~~~f~V~~ 195 (238)
.+|.|. .++++|.+.+|+++|.+.|+.|..-..++. .+...-.|+|..
T Consensus 265 ~~i~v~~~~~~~g~~~~If~~La~~~I~vd~I~q~~s~~~~g~~~isf~v~~ 316 (421)
T 3ab4_A 265 AKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVFSVEDGTTDITFTCPR 316 (421)
T ss_dssp EEEEEEEEESSTTHHHHHHHHHHHTTCCCEEEEECCCC--CCEEEEEEEEET
T ss_pred EEEEEeccCCcccHHHHHHHHHHHcCCcEEEEEccCccccCCcceEEEEEec
Confidence 456776 578899999999999999999887654333 244455666654
No 59
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}
Probab=27.42 E-value=1.2e+02 Score=27.74 Aligned_cols=46 Identities=15% Similarity=0.158 Sum_probs=37.7
Q ss_pred EEEEEEeCCCCCcHHHHHHHHHhcCCceEEEEEeecCCEEEEEEEE
Q 026479 148 FKASLCCEDRSDLLPDIIEILKSLHLKTLKSEMVTLGGRIRNVLII 193 (238)
Q Consensus 148 v~I~i~c~~r~GlL~~Il~aLe~lgL~V~~A~Ist~g~rv~~~f~V 193 (238)
..|-+.-.+.||.|.+|..+|.+.|+.|..-...|-|+....++-|
T Consensus 344 ~r~~~~h~n~p~~~~~i~~~~~~~~~ni~~~~~~~~~~~~y~~~d~ 389 (416)
T 3k5p_A 344 TRFMHVHENRPGILNSLMNVFSHHHINIASQFLQTDGEVGYLVMEA 389 (416)
T ss_dssp EEEEEEECCCTTHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEE
T ss_pred eEEEEEecCCccHHHHHHHHHHHcCCCHHHHhccCCCceEEEEEEe
Confidence 4565566889999999999999999999999988888875544444
No 60
>2jqq_A Conserved oligomeric golgi complex subunit 2; protein, helical bundle, vesicular transport, tethering, protein transport; NMR {Saccharomyces cerevisiae}
Probab=26.71 E-value=50 Score=27.42 Aligned_cols=46 Identities=11% Similarity=0.278 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHhccCCCCCCChhhHHHHHHHHHHHHHHHHHHHhcc
Q 026479 76 RERINSHLNKLRSILSCNSKLDKASLLARVVQRVRELKEQTIELTEV 122 (238)
Q Consensus 76 R~~in~~~~~Lr~lvP~~~k~dK~siL~~ai~yik~Lq~~~~~l~~~ 122 (238)
|..++.-..+|+.|+- ..-..-..++.+||+|+|.|-.-...|+.-
T Consensus 53 ~~Dl~~F~~QL~qL~~-~~i~~Tre~v~d~l~YLkkLD~l~~~Lq~h 98 (204)
T 2jqq_A 53 QSDLQKFMTQLDHLIK-DDISNTQEIIKDVLEYLKKLDEIYGSLRNH 98 (204)
T ss_dssp HHHHHHHHHHHHHHHH-HSCSTTHHHHHHHHHHHHHHHHHHHTCSSS
T ss_pred HHHHHHHHHHHHHHHh-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6668888888888863 222355688999999999998877777644
No 61
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=26.64 E-value=89 Score=24.46 Aligned_cols=35 Identities=26% Similarity=0.443 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhccCCC----CCCChhhHHHHHHHHHHHH
Q 026479 78 RINSHLNKLRSILSCN----SKLDKASLLARVVQRVREL 112 (238)
Q Consensus 78 ~in~~~~~Lr~lvP~~----~k~dK~siL~~ai~yik~L 112 (238)
.|+-.|+.|..++|.- .++.|--||..|.++...|
T Consensus 95 tId~gfqrl~k~~pr~pgdpe~lpk~~~lkraa~l~e~~ 133 (138)
T 3muj_A 95 TIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEAL 133 (138)
T ss_dssp CHHHHHHHHHHHSCCCTTCCSSCCHHHHHHHHHHHHHHH
T ss_pred ccccchhhhccccCCCCCChhhhhHHHHHHHHHHHHHHH
Confidence 3788999999999943 4788999999999988765
No 62
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=25.67 E-value=78 Score=25.19 Aligned_cols=32 Identities=16% Similarity=0.074 Sum_probs=26.8
Q ss_pred EEEEEEeC---CCCCcHHHHHHHHHhcCCceEEEE
Q 026479 148 FKASLCCE---DRSDLLPDIIEILKSLHLKTLKSE 179 (238)
Q Consensus 148 v~I~i~c~---~r~GlL~~Il~aLe~lgL~V~~A~ 179 (238)
.+|.+... ..||++.+++++|.+.|+.|....
T Consensus 97 a~VsvVG~gm~~~~Gvaa~~f~aLa~~~InI~~Is 131 (181)
T 3s1t_A 97 GKVSLIGAGMRSHPGVTATFCEALAAVGVNIELIS 131 (181)
T ss_dssp EEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE
T ss_pred EEEEEEecccccCchHHHHHHHHHHHCCCcEEEEE
Confidence 46666654 589999999999999999988776
No 63
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=25.34 E-value=83 Score=17.13 Aligned_cols=20 Identities=15% Similarity=0.122 Sum_probs=16.0
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 026479 99 ASLLARVVQRVRELKEQTIE 118 (238)
Q Consensus 99 ~siL~~ai~yik~Lq~~~~~ 118 (238)
.|-|-+|-.|+..|+.+++.
T Consensus 3 vsgliearkyleqlhrklkn 22 (26)
T 1xkm_B 3 VSGLIEARKYLEQLHRKLKN 22 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhc
Confidence 46678899999999988764
No 64
>2qsw_A Methionine import ATP-binding protein METN 2; ABC transporter, structural genomics, APC87322.1, PSI-2, protein structure initiative; 1.50A {Enterococcus faecalis} SCOP: d.58.18.13
Probab=22.71 E-value=2e+02 Score=20.17 Aligned_cols=51 Identities=10% Similarity=0.143 Sum_probs=37.1
Q ss_pred eEEEEEEEeCC-CCCcHHHHHHHHHhcCCceEEEEEeecCCEEEEEEEEeecC
Q 026479 146 LIFKASLCCED-RSDLLPDIIEILKSLHLKTLKSEMVTLGGRIRNVLIIAAEK 197 (238)
Q Consensus 146 ~~v~I~i~c~~-r~GlL~~Il~aLe~lgL~V~~A~Ist~g~rv~~~f~V~~~~ 197 (238)
..+.+.+.... ..-+++.+...+ ...+.|+.++|..+++..+-.+++.-.+
T Consensus 24 ~lv~l~f~g~~~~~pvis~l~~~~-~v~vnIl~g~i~~i~~~~~G~L~v~l~G 75 (100)
T 2qsw_A 24 KIVRLLFHGEQAKLPIISHIVQEY-QVEVSIIQGNIQQTKQGAVGSLYIQLLG 75 (100)
T ss_dssp EEEEEEEESCSCSSCHHHHHHHHH-TCEEEEEEEEEEEETTEEEEEEEEEEES
T ss_pred EEEEEEEcCCCcCchHHHHHHHHh-CCCEEEEEeeceEcCCeeEEEEEEEEEC
Confidence 35566655444 345555655544 5778899999999999999999998764
No 65
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=20.86 E-value=3.9e+02 Score=23.28 Aligned_cols=66 Identities=11% Similarity=-0.023 Sum_probs=44.9
Q ss_pred EEEEEEeCC-CCCcHHHHHHHHHhcCCceEEEEEeecCCEEEEEEEEeecCCCChhhHHHHHHHHHHHHhh
Q 026479 148 FKASLCCED-RSDLLPDIIEILKSLHLKTLKSEMVTLGGRIRNVLIIAAEKDHSIESVHFLQNALKSLLER 217 (238)
Q Consensus 148 v~I~i~c~~-r~GlL~~Il~aLe~lgL~V~~A~Ist~g~rv~~~f~V~~~~~~~~~~~~~L~~aL~~vl~~ 217 (238)
..+.+...+ +++++.+|...|.+.|++|......+-...+..-|++.... .....++.+|.++...
T Consensus 102 ~~~~llg~~~~~~~~~~i~~~l~~~~~Ni~~l~~~~~~~~~~~~~~v~~~~----~~~~~l~~~l~~l~~~ 168 (415)
T 3p96_A 102 HTIFVLGRPITAAAFGAVAREVAALGVNIDLIRGVSDYPVIGLELRVSVPP----GADEALRTALNRVSSE 168 (415)
T ss_dssp EEEEEEESSCCHHHHHHHHHHHHHTTCEEEEEEEEESSSSEEEEEEEECCT----TCHHHHHHHHHHHHHH
T ss_pred EEEEEEeCCCCHHHHHHHHHHHHHcCCCccceeeccCCCceEEEEEeeCCC----CCHHHHHHHHHHHhhh
Confidence 456677788 89999999999999999998877655323333335565443 2345667776665543
Done!