Query 026480
Match_columns 238
No_of_seqs 243 out of 839
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 08:33:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026480.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026480hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12428 DUF3675: Protein of u 100.0 1.5E-40 3.2E-45 268.9 9.6 116 74-191 1-118 (118)
2 PHA02825 LAP/PHD finger-like p 99.8 6.4E-20 1.4E-24 155.0 6.1 68 13-84 3-71 (162)
3 KOG1609 Protein involved in mR 99.8 3.5E-20 7.7E-25 165.5 1.1 201 13-214 73-280 (323)
4 PHA02862 5L protein; Provision 99.7 1.4E-17 3.1E-22 139.1 6.5 63 18-84 2-65 (156)
5 smart00744 RINGv The RING-vari 99.7 8.1E-18 1.7E-22 116.9 3.1 49 20-69 1-49 (49)
6 PF12906 RINGv: RING-variant d 99.7 1.4E-17 3.1E-22 114.7 1.3 47 21-68 1-47 (47)
7 KOG3053 Uncharacterized conser 99.4 5E-14 1.1E-18 127.2 3.6 68 11-78 13-87 (293)
8 COG5183 SSM4 Protein involved 99.4 2.2E-13 4.8E-18 137.5 3.6 59 14-73 8-66 (1175)
9 PF13639 zf-RING_2: Ring finge 98.3 1.7E-07 3.7E-12 62.6 1.4 44 19-69 1-44 (44)
10 KOG4628 Predicted E3 ubiquitin 98.1 3E-06 6.6E-11 80.0 4.9 50 19-74 230-279 (348)
11 PF12678 zf-rbx1: RING-H2 zinc 97.5 5.5E-05 1.2E-09 56.2 2.5 45 18-69 19-73 (73)
12 COG5540 RING-finger-containing 97.5 6.4E-05 1.4E-09 70.3 3.3 52 16-73 321-372 (374)
13 PHA02929 N1R/p28-like protein; 97.5 9.9E-05 2.1E-09 66.7 3.6 51 17-74 173-228 (238)
14 COG5243 HRD1 HRD ubiquitin lig 97.4 0.00019 4.2E-09 68.8 5.2 61 16-83 285-355 (491)
15 cd00162 RING RING-finger (Real 97.4 0.00014 3.1E-09 46.2 2.8 44 20-71 1-44 (45)
16 PF12861 zf-Apc11: Anaphase-pr 97.4 0.0002 4.4E-09 55.5 3.8 53 18-74 21-83 (85)
17 PF11793 FANCL_C: FANCL C-term 97.3 6E-05 1.3E-09 55.8 0.4 54 18-74 2-67 (70)
18 smart00184 RING Ring finger. E 97.1 0.0005 1.1E-08 42.1 2.6 39 21-68 1-39 (39)
19 PLN03208 E3 ubiquitin-protein 97.1 0.00051 1.1E-08 60.4 3.5 50 16-73 16-79 (193)
20 PF13920 zf-C3HC4_3: Zinc fing 97.0 0.00038 8.3E-09 47.5 2.1 45 19-73 3-48 (50)
21 COG5219 Uncharacterized conser 96.9 9.8E-05 2.1E-09 77.2 -2.3 63 9-74 1460-1524(1525)
22 PF00097 zf-C3HC4: Zinc finger 96.9 0.00055 1.2E-08 44.5 1.8 41 21-68 1-41 (41)
23 PHA02926 zinc finger-like prot 96.9 0.0009 2E-08 60.3 3.6 60 17-83 169-238 (242)
24 KOG0802 E3 ubiquitin ligase [P 96.7 0.0011 2.3E-08 65.7 2.8 49 17-72 290-340 (543)
25 KOG0317 Predicted E3 ubiquitin 96.3 0.0044 9.6E-08 57.5 4.3 52 13-74 234-285 (293)
26 KOG0828 Predicted E3 ubiquitin 96.2 0.0033 7.2E-08 62.2 3.2 53 15-73 568-634 (636)
27 PF13923 zf-C3HC4_2: Zinc fing 96.0 0.0034 7.3E-08 40.8 1.3 38 21-68 1-39 (39)
28 PF14634 zf-RING_5: zinc-RING 96.0 0.0055 1.2E-07 41.0 2.3 44 20-70 1-44 (44)
29 smart00504 Ubox Modified RING 95.7 0.013 2.8E-07 40.9 3.2 44 20-73 3-46 (63)
30 PF06679 DUF1180: Protein of u 95.6 0.018 3.8E-07 49.6 4.4 51 163-214 90-143 (163)
31 KOG0827 Predicted E3 ubiquitin 95.5 0.01 2.2E-07 57.4 2.9 46 18-69 4-52 (465)
32 KOG1493 Anaphase-promoting com 95.3 0.0073 1.6E-07 46.4 0.9 51 20-74 22-82 (84)
33 KOG0823 Predicted E3 ubiquitin 94.8 0.034 7.4E-07 50.2 4.1 50 15-72 44-94 (230)
34 COG5194 APC11 Component of SCF 94.5 0.031 6.8E-07 43.3 2.6 27 46-74 56-82 (88)
35 TIGR00599 rad18 DNA repair pro 94.1 0.035 7.6E-07 53.7 2.7 48 16-73 24-71 (397)
36 KOG1734 Predicted RING-contain 93.8 0.018 4E-07 53.4 0.3 59 11-74 217-282 (328)
37 KOG0804 Cytoplasmic Zn-finger 93.6 0.022 4.7E-07 55.9 0.3 48 17-73 174-222 (493)
38 PF13445 zf-RING_UBOX: RING-ty 93.4 0.047 1E-06 37.0 1.6 41 21-66 1-43 (43)
39 KOG1785 Tyrosine kinase negati 91.2 0.074 1.6E-06 51.9 0.5 47 19-73 370-416 (563)
40 KOG4445 Uncharacterized conser 90.4 0.16 3.4E-06 48.0 1.9 52 17-73 114-186 (368)
41 KOG4265 Predicted E3 ubiquitin 90.4 0.23 5.1E-06 47.4 3.1 50 14-73 286-336 (349)
42 KOG1645 RING-finger-containing 90.1 0.23 4.9E-06 48.6 2.7 51 17-71 3-54 (463)
43 PF15227 zf-C3HC4_4: zinc fing 89.9 0.18 3.8E-06 33.7 1.3 40 21-68 1-42 (42)
44 PF05883 Baculo_RING: Baculovi 89.9 0.15 3.2E-06 42.7 1.2 43 17-59 25-68 (134)
45 KOG2930 SCF ubiquitin ligase, 89.9 0.19 4E-06 40.8 1.7 26 46-73 83-108 (114)
46 PF15176 LRR19-TM: Leucine-ric 89.7 1.6 3.4E-05 35.1 6.8 75 160-235 13-96 (102)
47 PF14570 zf-RING_4: RING/Ubox 89.1 0.3 6.5E-06 34.2 2.1 46 21-73 1-48 (48)
48 PLN02189 cellulose synthase 88.3 0.63 1.4E-05 50.0 4.7 53 17-73 33-87 (1040)
49 PLN02436 cellulose synthase A 86.6 0.88 1.9E-05 49.1 4.6 55 16-74 34-90 (1094)
50 KOG1002 Nucleotide excision re 86.4 0.53 1.1E-05 47.7 2.7 62 10-79 528-592 (791)
51 PF14851 FAM176: FAM176 family 85.5 1.3 2.8E-05 37.9 4.3 13 174-186 29-41 (153)
52 TIGR00570 cdk7 CDK-activating 85.4 0.87 1.9E-05 43.0 3.5 50 19-74 4-55 (309)
53 PF04564 U-box: U-box domain; 84.7 0.6 1.3E-05 34.3 1.7 45 20-73 6-50 (73)
54 PF06210 DUF1003: Protein of u 84.2 4.3 9.3E-05 32.6 6.5 46 142-188 8-56 (108)
55 KOG2177 Predicted E3 ubiquitin 82.8 0.56 1.2E-05 39.4 1.0 45 16-70 11-55 (386)
56 PF14569 zf-UDP: Zinc-binding 82.7 1.5 3.3E-05 33.7 3.2 55 16-74 7-63 (80)
57 PF05290 Baculo_IE-1: Baculovi 82.5 1 2.2E-05 38.0 2.3 55 17-74 79-133 (140)
58 COG5432 RAD18 RING-finger-cont 80.3 0.79 1.7E-05 43.4 1.1 47 17-73 24-70 (391)
59 KOG1039 Predicted E3 ubiquitin 80.3 1.9 4.1E-05 41.3 3.6 51 17-72 160-220 (344)
60 PLN02638 cellulose synthase A 80.3 1.6 3.5E-05 47.2 3.5 53 17-73 16-70 (1079)
61 KOG1941 Acetylcholine receptor 79.5 0.91 2E-05 44.5 1.2 49 17-70 364-413 (518)
62 PF10272 Tmpp129: Putative tra 79.0 1.9 4.2E-05 41.4 3.3 34 37-73 307-351 (358)
63 PLN02195 cellulose synthase A 79.0 1.8 3.9E-05 46.4 3.4 53 17-73 5-59 (977)
64 PLN02400 cellulose synthase 78.1 2.5 5.5E-05 45.8 4.1 53 17-73 35-89 (1085)
65 PF02480 Herpes_gE: Alphaherpe 76.5 0.81 1.8E-05 44.8 0.0 27 167-193 352-378 (439)
66 KOG0287 Postreplication repair 75.8 0.96 2.1E-05 43.6 0.3 47 17-73 22-68 (442)
67 KOG0320 Predicted E3 ubiquitin 74.8 2.1 4.6E-05 37.7 2.1 48 17-72 130-177 (187)
68 KOG0825 PHD Zn-finger protein 74.6 0.84 1.8E-05 48.1 -0.5 26 46-73 146-171 (1134)
69 KOG1428 Inhibitor of type V ad 71.6 3.6 7.7E-05 46.6 3.3 59 10-73 3478-3544(3738)
70 PLN02915 cellulose synthase A 69.8 4.5 9.8E-05 43.8 3.6 56 14-73 11-68 (1044)
71 KOG1834 Calsyntenin [Extracell 67.7 1.1 2.3E-05 46.5 -1.5 18 169-186 829-846 (952)
72 COG4420 Predicted membrane pro 67.1 21 0.00045 31.7 6.5 45 142-186 62-109 (191)
73 PF08746 zf-RING-like: RING-li 64.6 4.1 8.8E-05 27.4 1.3 23 46-68 21-43 (43)
74 KOG1952 Transcription factor N 64.4 6.7 0.00014 41.8 3.4 55 15-73 188-247 (950)
75 KOG3899 Uncharacterized conser 63.5 4.4 9.6E-05 38.5 1.8 32 39-73 323-365 (381)
76 PF10367 Vps39_2: Vacuolar sor 63.2 2.5 5.4E-05 31.9 0.1 34 16-55 76-109 (109)
77 KOG1832 HIV-1 Vpr-binding prot 63.2 3.2 7E-05 44.7 0.9 9 62-70 1213-1221(1516)
78 PF02084 Bindin: Bindin; Inte 62.5 1.5 3.2E-05 39.9 -1.4 19 206-224 154-172 (238)
79 COG5175 MOT2 Transcriptional r 58.5 7.5 0.00016 37.7 2.4 61 6-73 2-64 (480)
80 PRK12766 50S ribosomal protein 58.3 3.6 7.9E-05 37.4 0.3 18 220-237 76-93 (232)
81 KOG1832 HIV-1 Vpr-binding prot 57.2 5.4 0.00012 43.1 1.4 12 121-132 1300-1311(1516)
82 PF07800 DUF1644: Protein of u 56.3 14 0.00031 32.0 3.5 38 18-60 2-49 (162)
83 PF05795 Plasmodium_Vir: Plasm 55.7 10 0.00022 34.1 2.7 33 165-197 280-312 (354)
84 KOG2164 Predicted E3 ubiquitin 55.5 10 0.00022 38.2 2.9 49 18-74 186-237 (513)
85 COG5236 Uncharacterized conser 55.5 12 0.00026 36.5 3.3 64 5-76 48-111 (493)
86 PTZ00415 transmission-blocking 55.3 6.4 0.00014 45.1 1.5 6 195-200 134-139 (2849)
87 PF01528 Herpes_glycop: Herpes 54.6 20 0.00044 34.7 4.7 27 174-200 309-335 (374)
88 PF05009 EBV-NA3: Epstein-Barr 53.3 4.4 9.6E-05 37.3 0.0 30 207-236 212-242 (255)
89 PHA03283 envelope glycoprotein 53.3 14 0.00031 37.3 3.5 34 171-205 404-437 (542)
90 PF13153 DUF3985: Protein of u 51.9 40 0.00088 23.0 4.4 24 164-187 14-37 (44)
91 PF14447 Prok-RING_4: Prokaryo 51.7 11 0.00025 27.1 1.9 46 17-74 6-51 (55)
92 KOG0956 PHD finger protein AF1 48.8 11 0.00024 39.6 1.9 58 17-74 116-183 (900)
93 PF08507 COPI_assoc: COPI asso 48.5 91 0.002 25.3 7.0 6 142-147 41-46 (136)
94 PF10669 Phage_Gp23: Protein g 45.9 11 0.00024 30.5 1.2 37 163-203 10-46 (121)
95 PF08595 RXT2_N: RXT2-like, N- 45.4 11 0.00024 32.0 1.2 19 218-236 68-86 (149)
96 PRK11246 hypothetical protein; 43.9 28 0.00061 31.5 3.6 12 170-181 168-179 (218)
97 KOG1940 Zn-finger protein [Gen 42.4 13 0.00028 34.7 1.3 43 21-70 161-204 (276)
98 PRK10747 putative protoheme IX 42.1 97 0.0021 29.2 7.1 32 162-193 33-65 (398)
99 PF04532 DUF587: Protein of un 41.3 7.8 0.00017 34.7 -0.3 29 24-52 93-122 (215)
100 PF14018 DUF4234: Domain of un 41.2 1.4E+02 0.0029 21.6 8.3 37 163-199 38-74 (75)
101 PF12794 MscS_TM: Mechanosensi 41.0 72 0.0016 30.0 6.0 21 177-197 237-257 (340)
102 PF05191 ADK_lid: Adenylate ki 40.1 11 0.00025 24.5 0.4 17 63-79 2-18 (36)
103 PF15539 CAF1-p150_C2: CAF1 co 39.5 21 0.00046 33.5 2.1 33 189-222 214-247 (292)
104 KOG3268 Predicted E3 ubiquitin 39.3 28 0.00061 31.1 2.8 28 46-73 192-228 (234)
105 KOG1100 Predicted E3 ubiquitin 39.3 12 0.00025 33.3 0.5 39 19-71 159-198 (207)
106 COG5574 PEX10 RING-finger-cont 39.3 38 0.00082 31.6 3.7 48 17-73 214-262 (271)
107 PHA03281 envelope glycoprotein 38.8 35 0.00076 35.0 3.7 11 220-230 608-618 (642)
108 PF12420 DUF3671: Protein of u 38.4 1.2E+02 0.0025 24.2 6.0 49 142-190 50-101 (104)
109 KOG3130 Uncharacterized conser 38.2 15 0.00032 36.4 1.0 20 173-192 233-252 (514)
110 PF08372 PRT_C: Plant phosphor 37.4 24 0.00053 30.2 2.1 8 193-200 13-20 (156)
111 PF11368 DUF3169: Protein of u 37.1 1.9E+02 0.0041 25.7 7.8 41 161-201 36-77 (248)
112 PHA02834 chemokine receptor-li 36.7 73 0.0016 28.9 5.2 29 172-200 191-219 (323)
113 KOG1962 B-cell receptor-associ 36.3 2E+02 0.0044 26.0 7.8 21 177-197 103-123 (216)
114 PHA03234 DNA packaging protein 36.2 63 0.0014 30.0 4.8 27 173-199 200-226 (338)
115 KOG4172 Predicted E3 ubiquitin 35.8 24 0.00052 25.8 1.5 47 18-73 7-54 (62)
116 KOG1973 Chromatin remodeling p 35.1 12 0.00025 34.4 -0.3 40 31-71 228-268 (274)
117 PF11431 Transport_MerF: Membr 34.5 1.1E+02 0.0024 21.4 4.5 12 189-200 35-46 (46)
118 PRK10714 undecaprenyl phosphat 34.2 2E+02 0.0044 26.5 7.8 14 140-153 244-257 (325)
119 PF09788 Tmemb_55A: Transmembr 34.0 59 0.0013 30.2 4.1 65 126-190 183-248 (256)
120 PHA03375 hypothetical protein; 33.7 13 0.00028 39.0 -0.2 29 24-52 99-128 (844)
121 KOG0824 Predicted E3 ubiquitin 33.6 36 0.00077 32.5 2.7 51 17-76 6-56 (324)
122 PRK11463 fxsA phage T7 F exclu 32.9 1.7E+02 0.0036 24.6 6.4 42 141-182 5-46 (148)
123 PF12753 Nro1: Nuclear pore co 32.8 15 0.00033 35.9 0.2 23 216-238 225-249 (404)
124 PHA03087 G protein-coupled che 32.2 1.7E+02 0.0037 26.2 6.8 33 168-200 201-233 (335)
125 PF00558 Vpu: Vpu protein; In 30.7 19 0.00041 27.8 0.3 15 176-190 11-25 (81)
126 PF03606 DcuC: C4-dicarboxylat 30.5 92 0.002 30.5 5.1 23 172-194 197-219 (465)
127 COG4846 CcdC Membrane protein 30.5 1.5E+02 0.0033 25.4 5.6 55 142-197 98-153 (163)
128 PF00001 7tm_1: 7 transmembran 30.4 2.1E+02 0.0046 23.0 6.6 33 169-201 147-179 (257)
129 smart00249 PHD PHD zinc finger 29.7 17 0.00036 22.7 -0.1 29 20-54 1-30 (47)
130 PF10628 CotE: Outer spore coa 29.7 22 0.00049 31.3 0.6 16 221-236 160-175 (182)
131 PF01440 Gemini_AL2: Geminivir 29.6 8.7 0.00019 32.3 -1.8 33 34-69 32-64 (134)
132 KOG2879 Predicted E3 ubiquitin 29.4 59 0.0013 30.7 3.3 50 16-73 237-287 (298)
133 PF13894 zf-C2H2_4: C2H2-type 29.4 22 0.00047 19.2 0.4 10 64-73 2-11 (24)
134 PHA03379 EBNA-3A; Provisional 29.4 33 0.00071 36.1 1.8 29 208-236 344-372 (935)
135 PHA03235 DNA packaging protein 29.3 2.5E+02 0.0053 27.0 7.7 28 174-201 208-235 (409)
136 KOG1607 Protein transporter of 29.3 3.5E+02 0.0075 25.9 8.5 12 160-171 253-264 (318)
137 KOG0843 Transcription factor E 29.2 32 0.0007 30.6 1.5 19 186-206 145-163 (197)
138 PF01914 MarC: MarC family int 28.2 2E+02 0.0043 25.2 6.3 20 170-189 68-87 (203)
139 KOG3970 Predicted E3 ubiquitin 27.4 70 0.0015 29.6 3.4 51 16-72 48-104 (299)
140 KOG1725 Protein involved in me 27.3 96 0.0021 27.4 4.1 33 141-189 45-77 (186)
141 KOG2568 Predicted membrane pro 26.9 2.3E+02 0.005 28.9 7.2 15 185-199 431-445 (518)
142 PRK11877 psaI photosystem I re 26.9 79 0.0017 21.2 2.7 34 162-195 3-36 (38)
143 KOG0802 E3 ubiquitin ligase [P 26.5 32 0.00069 34.4 1.1 45 16-74 477-521 (543)
144 PF14812 PBP1_TM: Transmembran 26.2 22 0.00048 27.5 0.0 6 226-231 46-51 (81)
145 PF01616 Orbi_NS3: Orbivirus N 26.0 4.6E+02 0.01 23.4 8.2 67 134-200 97-165 (195)
146 PF11874 DUF3394: Domain of un 25.9 47 0.001 29.2 2.0 19 183-201 165-183 (183)
147 PF04423 Rad50_zn_hook: Rad50 25.8 46 0.00099 22.9 1.5 22 52-73 8-31 (54)
148 smart00782 PhnA_Zn_Ribbon PhnA 25.7 43 0.00094 23.2 1.4 23 60-82 5-28 (47)
149 COG3216 Uncharacterized protei 25.6 1.2E+02 0.0026 26.9 4.4 30 172-201 147-176 (184)
150 KOG0978 E3 ubiquitin ligase in 25.6 37 0.0008 35.6 1.4 48 18-74 643-690 (698)
151 PF00096 zf-C2H2: Zinc finger, 25.4 25 0.00054 19.5 0.1 11 64-74 2-12 (23)
152 PF07214 DUF1418: Protein of u 25.3 3.5E+02 0.0077 21.6 6.9 21 161-181 34-55 (96)
153 PF07895 DUF1673: Protein of u 25.3 1.1E+02 0.0024 27.0 4.2 49 138-188 126-174 (205)
154 KOG0943 Predicted ubiquitin-pr 25.1 43 0.00093 38.0 1.9 23 47-69 1394-1416(3015)
155 PF07301 DUF1453: Protein of u 24.7 2.1E+02 0.0047 24.3 5.7 41 141-182 96-136 (148)
156 KOG4032 Uncharacterized conser 24.5 2.6E+02 0.0057 24.8 6.3 30 148-177 69-98 (184)
157 PRK12468 flhB flagellar biosyn 24.4 3.4E+02 0.0075 26.4 7.7 61 135-195 149-212 (386)
158 PF00558 Vpu: Vpu protein; In 24.3 70 0.0015 24.8 2.4 7 207-213 51-57 (81)
159 PF04641 Rtf2: Rtf2 RING-finge 23.9 74 0.0016 28.7 2.9 51 15-73 110-161 (260)
160 PRK12721 secretion system appa 23.7 4.4E+02 0.0094 25.2 8.2 62 135-196 142-206 (349)
161 PRK11111 hypothetical protein; 23.2 2.8E+02 0.006 24.6 6.4 21 169-189 73-93 (214)
162 COG5346 Predicted membrane pro 22.8 1.1E+02 0.0024 25.7 3.4 44 134-189 87-130 (136)
163 PF04156 IncA: IncA protein; 22.3 4E+02 0.0086 22.3 6.9 21 140-160 10-30 (191)
164 PF02891 zf-MIZ: MIZ/SP-RING z 22.0 59 0.0013 22.4 1.5 35 34-71 11-50 (50)
165 KOG1334 WD40 repeat protein [G 22.0 1.2E+02 0.0026 30.9 4.1 17 217-233 535-552 (559)
166 KOG2068 MOT2 transcription fac 21.9 81 0.0018 30.2 2.9 54 16-75 247-300 (327)
167 KOG4692 Predicted E3 ubiquitin 21.8 64 0.0014 31.7 2.2 47 17-73 421-467 (489)
168 PF06305 DUF1049: Protein of u 21.7 2.4E+02 0.0053 19.6 4.7 15 177-191 30-44 (68)
169 PF09726 Macoilin: Transmembra 21.6 3.2E+02 0.0069 28.7 7.3 21 134-155 28-48 (697)
170 PF10571 UPF0547: Uncharacteri 21.5 47 0.001 20.2 0.8 13 61-73 13-25 (26)
171 PF14941 OAF: Transcriptional 21.1 35 0.00076 31.2 0.3 48 35-82 181-234 (240)
172 COG2322 Predicted membrane pro 21.1 2.3E+02 0.0049 25.0 5.2 54 140-193 85-144 (177)
173 PF14283 DUF4366: Domain of un 20.9 25 0.00054 31.6 -0.7 8 64-71 128-135 (218)
174 COG5249 RER1 Golgi protein inv 20.7 3.8E+02 0.0082 23.3 6.4 81 146-228 18-101 (180)
175 PF14143 YrhC: YrhC-like prote 20.6 1.7E+02 0.0036 22.2 3.8 15 141-155 17-31 (72)
176 KOG2548 SWAP mRNA splicing reg 20.4 58 0.0013 33.4 1.6 22 214-235 184-205 (653)
177 KOG4323 Polycomb-like PHD Zn-f 20.0 33 0.00072 34.3 -0.1 50 19-71 169-224 (464)
No 1
>PF12428 DUF3675: Protein of unknown function (DUF3675) ; InterPro: IPR022143 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF00097 from PFAM. There are two completely conserved residues (R and L) that may be functionally important.
Probab=100.00 E-value=1.5e-40 Score=268.86 Aligned_cols=116 Identities=52% Similarity=0.871 Sum_probs=110.4
Q ss_pred CCccCCCCCchhhhhhhcccccccccccccCCCCchHHHHHh--hhccccCCCccccCCCCchhhHHHHHHHHHHHHHHH
Q 026480 74 PGYTAPSKKSQLIEAAVTIRDSLQIPRREHVPRNPRLVAIAE--RLSAESHYPQCSSAAGRTAACCRSLALTFTVLLLVK 151 (238)
Q Consensus 74 ~~yt~P~~~~~~~~~~~~i~~~~~i~r~~~~~~~~~~~a~~~--~~~~~~~y~~~s~~~~~~a~~Cr~~ali~~~lLllr 151 (238)
|+||+|||+.+..+++|+||++|+++|+ +++|++++||++ +++++++|++|+++++++++||||+|||||++||||
T Consensus 1 PgYTaPp~~~~~~~~~i~ir~~we~~~~--d~~~~~~~a~~~ae~~~l~~~y~e~~~~~~~~a~~CRsvAli~m~LLllR 78 (118)
T PF12428_consen 1 PGYTAPPKKFQPGETAIDIRGNWEISRR--DLRDPRFLAMAAAERQFLESEYDEYAASNTRGAACCRSVALIFMVLLLLR 78 (118)
T ss_pred CCCCCCCCCCCcCccceEecCCcccccc--CccchhhhhhhhhhhhccccccccccccCCCceeHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999997665 589999999964 799999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCchHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 026480 152 HLFAVLTGNTDDYPFALVTVLLLRACGIILPMYVLMRTIT 191 (238)
Q Consensus 152 h~~~~~~~g~~~~~ft~l~v~~lr~~G~llp~Yi~~~~~~ 191 (238)
|+++++++|+++|||++||+++||++|||||||||+|+++
T Consensus 79 hal~l~~~~~~~~s~~lftl~~LRaaGilLP~Yim~rais 118 (118)
T PF12428_consen 79 HALALVTGGAEDYSFTLFTLLLLRAAGILLPCYIMARAIS 118 (118)
T ss_pred HHHHHhcCCcccccHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999999999999974
No 2
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=99.80 E-value=6.4e-20 Score=155.00 Aligned_cols=68 Identities=24% Similarity=0.553 Sum_probs=56.7
Q ss_pred CCCCCCCeeeEeccCcccCCCccccccccCCccccccHHHHHHHHHhcCCcccccccCcccCCcc-CCCCCch
Q 026480 13 SNPETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGPGYT-APSKKSQ 84 (238)
Q Consensus 13 ~~s~~~~~CRIC~ee~~e~~~~Li~PC~C~GSlk~vH~~CL~~Wl~~k~~~~CEiCk~~y~~~yt-~P~~~~~ 84 (238)
+.+...+.||||++++. ++.+||+|+||+||||++||++|++.+++..||+|+++|++... .|.++|.
T Consensus 3 ~~s~~~~~CRIC~~~~~----~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~~~~kpl~~W~ 71 (162)
T PHA02825 3 DVSLMDKCCWICKDEYD----VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIKKNYKKCTKWR 71 (162)
T ss_pred CcCCCCCeeEecCCCCC----CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEEEecCCCcccc
Confidence 45668899999998853 36789999999999999999999999999999999999987643 2544443
No 3
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=99.78 E-value=3.5e-20 Score=165.50 Aligned_cols=201 Identities=21% Similarity=0.260 Sum_probs=141.8
Q ss_pred CCCCCCCeeeEeccCcccCCC-ccccccccCCccccccHHHHHHHHHhcCCcccccccCcccCCccCCCCCchhhhhhhc
Q 026480 13 SNPETTSHCRICHEEEFESCN-SLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGPGYTAPSKKSQLIEAAVT 91 (238)
Q Consensus 13 ~~s~~~~~CRIC~ee~~e~~~-~Li~PC~C~GSlk~vH~~CL~~Wl~~k~~~~CEiCk~~y~~~yt~P~~~~~~~~~~~~ 91 (238)
..+.+...||||+++.++... +++.||.|+|++++||+.|+++|+..|++..||+|++.|.+.++.+++.......++.
T Consensus 73 ~~~~~~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~~~~~~~~~~~~~~~~~ 152 (323)
T KOG1609|consen 73 ESPSSGPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINVGTKLKPLIVISKVRSG 152 (323)
T ss_pred cCCCCCCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccceecceeecceeehhhhhhH
Confidence 334446899999998765322 6999999999999999999999999999999999999999888776666555554554
Q ss_pred ccccccccccccCCCCchHHHHH--hhhccccCCCccccCCCCchhhHHHHH-HHHHHHHHHHHHHHHHhC---CCCCch
Q 026480 92 IRDSLQIPRREHVPRNPRLVAIA--ERLSAESHYPQCSSAAGRTAACCRSLA-LTFTVLLLVKHLFAVLTG---NTDDYP 165 (238)
Q Consensus 92 i~~~~~i~r~~~~~~~~~~~a~~--~~~~~~~~y~~~s~~~~~~a~~Cr~~a-li~~~lLllrh~~~~~~~---g~~~~~ 165 (238)
....|...... ...++..+++. ...++...+.+.....+.++..+++++ ++..++.++++.+..... ....|.
T Consensus 153 ~~~~~~~~~~~-~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 231 (323)
T KOG1609|consen 153 ALSERTLSGMI-LLKVALLVAIIVSVLPLLLGLLFELVLGVPSLVVESPLANPLALVALGLLGFKIWIFIILSGYIFILK 231 (323)
T ss_pred hhhheeeehhh-hhhhhhhheeeEEeehhhhhhhHHHhccccccccCCCccCchhheeecceechHHHHHHHHHHHHHHH
Confidence 54455444321 22233333332 133444444544455555666677666 666777777776664432 233677
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhhhcccccccCCCCCc
Q 026480 166 FALVTVLLLRACGIILPMYVLMRTITAIHNSIRREYHHVTYDDETSNSD 214 (238)
Q Consensus 166 ft~l~v~~lr~~G~llp~Yi~~~~~~~lq~r~~r~~~~~~~~~~~~~~~ 214 (238)
.+++.++++|+.+++.+.++++.+....|+++.++.++.-+...++...
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (323)
T KOG1609|consen 232 SLKVKLVLIRAVIFLLLIKVVLAAVVILQLLLQRLVGYLLANSLTPLYI 280 (323)
T ss_pred HHHHHHhHhhhhccchhhhhhhhhHHHHHHHHhcceeEEEecccceeee
Confidence 7888899999999999999988777777888888777766666666654
No 4
>PHA02862 5L protein; Provisional
Probab=99.71 E-value=1.4e-17 Score=139.06 Aligned_cols=63 Identities=27% Similarity=0.546 Sum_probs=52.2
Q ss_pred CCeeeEeccCcccCCCccccccccCCccccccHHHHHHHHHhcCCcccccccCcccCCccC-CCCCch
Q 026480 18 TSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGPGYTA-PSKKSQ 84 (238)
Q Consensus 18 ~~~CRIC~ee~~e~~~~Li~PC~C~GSlk~vH~~CL~~Wl~~k~~~~CEiCk~~y~~~yt~-P~~~~~ 84 (238)
...||||++++++. .+||+|+||+||||++||++|++.+++..||+|+++|.+.-.. |.++|.
T Consensus 2 ~diCWIC~~~~~e~----~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~Ik~~yKpf~kW~ 65 (156)
T PHA02862 2 SDICWICNDVCDER----NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNIKKTYVSFKKWN 65 (156)
T ss_pred CCEEEEecCcCCCC----cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEEEEccccHHHhh
Confidence 36899999987542 6999999999999999999999999999999999999753322 444453
No 5
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=99.70 E-value=8.1e-18 Score=116.87 Aligned_cols=49 Identities=49% Similarity=1.220 Sum_probs=44.2
Q ss_pred eeeEeccCcccCCCccccccccCCccccccHHHHHHHHHhcCCccccccc
Q 026480 20 HCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICL 69 (238)
Q Consensus 20 ~CRIC~ee~~e~~~~Li~PC~C~GSlk~vH~~CL~~Wl~~k~~~~CEiCk 69 (238)
+||||+++ +++.+++++||+|+||++|||++||++|+..+++.+||+|+
T Consensus 1 ~CrIC~~~-~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDE-GDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCC-CCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 59999983 33456899999999999999999999999999999999996
No 6
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=99.66 E-value=1.4e-17 Score=114.69 Aligned_cols=47 Identities=53% Similarity=1.220 Sum_probs=38.4
Q ss_pred eeEeccCcccCCCccccccccCCccccccHHHHHHHHHhcCCcccccc
Q 026480 21 CRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEIC 68 (238)
Q Consensus 21 CRIC~ee~~e~~~~Li~PC~C~GSlk~vH~~CL~~Wl~~k~~~~CEiC 68 (238)
||||+++++++. +|++||+|+||++|||++||++|+..+++.+||+|
T Consensus 1 CrIC~~~~~~~~-~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDE-PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS--EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCC-ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 899999877644 89999999999999999999999999999999998
No 7
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.44 E-value=5e-14 Score=127.20 Aligned_cols=68 Identities=31% Similarity=0.666 Sum_probs=58.0
Q ss_pred CCCCCCCCCeeeEeccCcccCCCc-cccccccCCccccccHHHHHHHHHhcC------CcccccccCcccCCccC
Q 026480 11 FKSNPETTSHCRICHEEEFESCNS-LEAPCACSGTVKFAHRDCIQRWCYEKG------NTTCEICLQEYGPGYTA 78 (238)
Q Consensus 11 ~~~~s~~~~~CRIC~ee~~e~~~~-Li~PC~C~GSlk~vH~~CL~~Wl~~k~------~~~CEiCk~~y~~~yt~ 78 (238)
+.++.+.+..||||+..++++... ++.||.|+||.||||++||.+|+.+|. ...|+.|+++|.++|+.
T Consensus 13 ~~~~~e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYiiv~P~ 87 (293)
T KOG3053|consen 13 GSDNQELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYIIVFPQ 87 (293)
T ss_pred cCCccccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchheeeccc
Confidence 345667889999999888775433 899999999999999999999998873 48999999999987754
No 8
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=99.37 E-value=2.2e-13 Score=137.50 Aligned_cols=59 Identities=39% Similarity=0.951 Sum_probs=53.0
Q ss_pred CCCCCCeeeEeccCcccCCCccccccccCCccccccHHHHHHHHHhcCCcccccccCccc
Q 026480 14 NPETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (238)
Q Consensus 14 ~s~~~~~CRIC~ee~~e~~~~Li~PC~C~GSlk~vH~~CL~~Wl~~k~~~~CEiCk~~y~ 73 (238)
..++...||||+.++.+ ++||-.||+|+||+||+|++||..|+..+++.+|+|||++|+
T Consensus 8 mN~d~~~CRICr~e~~~-d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~ 66 (1175)
T COG5183 8 MNEDKRSCRICRTEDIR-DDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYK 66 (1175)
T ss_pred CCccchhceeecCCCCC-CCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceee
Confidence 34566899999998765 468999999999999999999999999999999999998875
No 9
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.35 E-value=1.7e-07 Score=62.56 Aligned_cols=44 Identities=32% Similarity=0.833 Sum_probs=34.9
Q ss_pred CeeeEeccCcccCCCccccccccCCccccccHHHHHHHHHhcCCccccccc
Q 026480 19 SHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICL 69 (238)
Q Consensus 19 ~~CRIC~ee~~e~~~~Li~PC~C~GSlk~vH~~CL~~Wl~~k~~~~CEiCk 69 (238)
+.|-||+++..++......||. +.+|.+|+++|++.+ .+||+|+
T Consensus 1 d~C~IC~~~~~~~~~~~~l~C~-----H~fh~~Ci~~~~~~~--~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLPCG-----HVFHRSCIKEWLKRN--NSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEETTS-----EEEEHHHHHHHHHHS--SB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEccCC-----CeeCHHHHHHHHHhC--CcCCccC
Confidence 3699999987665556677764 999999999999885 4999996
No 10
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=3e-06 Score=80.03 Aligned_cols=50 Identities=26% Similarity=0.611 Sum_probs=43.4
Q ss_pred CeeeEeccCcccCCCccccccccCCccccccHHHHHHHHHhcCCcccccccCcccC
Q 026480 19 SHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGP 74 (238)
Q Consensus 19 ~~CRIC~ee~~e~~~~Li~PC~C~GSlk~vH~~CL~~Wl~~k~~~~CEiCk~~y~~ 74 (238)
..|-||+|+..+++..-+.||+ |.+|..|++.|+... .+.||+||+.-..
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~-----H~FH~~CIDpWL~~~-r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCS-----HKFHVNCIDPWLTQT-RTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCC-----CchhhccchhhHhhc-CccCCCCCCcCCC
Confidence 7999999999887766789999 999999999999876 4679999987543
No 11
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=97.54 E-value=5.5e-05 Score=56.23 Aligned_cols=45 Identities=31% Similarity=0.840 Sum_probs=31.3
Q ss_pred CCeeeEeccCcccC----------CCccccccccCCccccccHHHHHHHHHhcCCccccccc
Q 026480 18 TSHCRICHEEEFES----------CNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICL 69 (238)
Q Consensus 18 ~~~CRIC~ee~~e~----------~~~Li~PC~C~GSlk~vH~~CL~~Wl~~k~~~~CEiCk 69 (238)
...|-||++...+. ......+|+ +.+|..||.+|++.+. +||+|+
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~-----H~FH~~Ci~~Wl~~~~--~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCG-----HIFHFHCISQWLKQNN--TCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTS-----EEEEHHHHHHHHTTSS--B-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecccC-----CCEEHHHHHHHHhcCC--cCCCCC
Confidence 44599999876331 111245665 9999999999996544 999996
No 12
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=6.4e-05 Score=70.32 Aligned_cols=52 Identities=19% Similarity=0.544 Sum_probs=42.3
Q ss_pred CCCCeeeEeccCcccCCCccccccccCCccccccHHHHHHHHHhcCCcccccccCccc
Q 026480 16 ETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (238)
Q Consensus 16 ~~~~~CRIC~ee~~e~~~~Li~PC~C~GSlk~vH~~CL~~Wl~~k~~~~CEiCk~~y~ 73 (238)
+...+|-||.+.--..+.-++.||+ |-+|..|+.+|+... ...||.|++..+
T Consensus 321 ~~GveCaICms~fiK~d~~~vlPC~-----H~FH~~Cv~kW~~~y-~~~CPvCrt~iP 372 (374)
T COG5540 321 DKGVECAICMSNFIKNDRLRVLPCD-----HRFHVGCVDKWLLGY-SNKCPVCRTAIP 372 (374)
T ss_pred CCCceEEEEhhhhcccceEEEeccC-----ceechhHHHHHHhhh-cccCCccCCCCC
Confidence 4558999999886655666899998 999999999999732 358999997664
No 13
>PHA02929 N1R/p28-like protein; Provisional
Probab=97.46 E-value=9.9e-05 Score=66.65 Aligned_cols=51 Identities=24% Similarity=0.618 Sum_probs=38.2
Q ss_pred CCCeeeEeccCcccCCC-----ccccccccCCccccccHHHHHHHHHhcCCcccccccCcccC
Q 026480 17 TTSHCRICHEEEFESCN-----SLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGP 74 (238)
Q Consensus 17 ~~~~CRIC~ee~~e~~~-----~Li~PC~C~GSlk~vH~~CL~~Wl~~k~~~~CEiCk~~y~~ 74 (238)
...+|.||++...+... ....||. |.+|..|+.+|+.. ..+||+|+..+..
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~-----H~FC~~CI~~Wl~~--~~tCPlCR~~~~~ 228 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCN-----HVFCIECIDIWKKE--KNTCPVCRTPFIS 228 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCC-----CcccHHHHHHHHhc--CCCCCCCCCEeeE
Confidence 45799999997443210 2345665 99999999999965 5599999988863
No 14
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=0.00019 Score=68.78 Aligned_cols=61 Identities=26% Similarity=0.643 Sum_probs=45.3
Q ss_pred CCCCeeeEeccCcccC----------CCccccccccCCccccccHHHHHHHHHhcCCcccccccCcccCCccCCCCCc
Q 026480 16 ETTSHCRICHEEEFES----------CNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGPGYTAPSKKS 83 (238)
Q Consensus 16 ~~~~~CRIC~ee~~e~----------~~~Li~PC~C~GSlk~vH~~CL~~Wl~~k~~~~CEiCk~~y~~~yt~P~~~~ 83 (238)
.+...|-||.++-..+ ..|-..||. |..|-.||+.|+.. ..+|||||.+.......|.+..
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCG-----HilHl~CLknW~ER--qQTCPICr~p~ifd~~~~~~~s 355 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCG-----HILHLHCLKNWLER--QQTCPICRRPVIFDQSSPTPAS 355 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCccccccc-----ceeeHHHHHHHHHh--ccCCCcccCccccccCCCCcCC
Confidence 3567999999883322 234578998 99999999999975 4599999998666665555443
No 15
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=97.39 E-value=0.00014 Score=46.21 Aligned_cols=44 Identities=36% Similarity=0.825 Sum_probs=33.4
Q ss_pred eeeEeccCcccCCCccccccccCCccccccHHHHHHHHHhcCCcccccccCc
Q 026480 20 HCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQE 71 (238)
Q Consensus 20 ~CRIC~ee~~e~~~~Li~PC~C~GSlk~vH~~CL~~Wl~~k~~~~CEiCk~~ 71 (238)
.|.||++...+ .....||. +.+|..|+.+|++. ++..|++|+..
T Consensus 1 ~C~iC~~~~~~--~~~~~~C~-----H~~c~~C~~~~~~~-~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFRE--PVVLLPCG-----HVFCRSCIDKWLKS-GKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhhC--ceEecCCC-----ChhcHHHHHHHHHh-CcCCCCCCCCc
Confidence 48899887622 12455576 88999999999986 66789999864
No 16
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=97.37 E-value=0.0002 Score=55.47 Aligned_cols=53 Identities=25% Similarity=0.443 Sum_probs=38.2
Q ss_pred CCeeeEeccCcccC---------CCccccccccCCccccccHHHHHHHHHhc-CCcccccccCcccC
Q 026480 18 TSHCRICHEEEFES---------CNSLEAPCACSGTVKFAHRDCIQRWCYEK-GNTTCEICLQEYGP 74 (238)
Q Consensus 18 ~~~CRIC~ee~~e~---------~~~Li~PC~C~GSlk~vH~~CL~~Wl~~k-~~~~CEiCk~~y~~ 74 (238)
...|-||....+.. +-+++ =+.|+ +-+|..||.+|+++. .+..||+|++.|++
T Consensus 21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv-~g~C~---H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 21 DDVCGICRMPFDGCCPDCKFPGDDCPLV-WGKCS---HNFHMHCILKWLSTQSSKGQCPMCRQPWKF 83 (85)
T ss_pred CCceeeEecccccCCCCccCCCCCCcee-eccCc---cHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence 56888887654321 11221 24676 899999999999874 56899999999874
No 17
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.32 E-value=6e-05 Score=55.77 Aligned_cols=54 Identities=19% Similarity=0.400 Sum_probs=25.1
Q ss_pred CCeeeEeccCcccCCCccc---cccccCCccccccHHHHHHHHHhcC---------CcccccccCcccC
Q 026480 18 TSHCRICHEEEFESCNSLE---APCACSGTVKFAHRDCIQRWCYEKG---------NTTCEICLQEYGP 74 (238)
Q Consensus 18 ~~~CRIC~ee~~e~~~~Li---~PC~C~GSlk~vH~~CL~~Wl~~k~---------~~~CEiCk~~y~~ 74 (238)
...|.||+....+...... ....|. +.+|..||.+|+.... .-.||.|+++...
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~---~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCG---KKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT-------B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccC---CHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence 4589999986442211222 334687 8999999999997631 1369999987653
No 18
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=97.06 E-value=0.0005 Score=42.12 Aligned_cols=39 Identities=44% Similarity=0.999 Sum_probs=31.0
Q ss_pred eeEeccCcccCCCccccccccCCccccccHHHHHHHHHhcCCcccccc
Q 026480 21 CRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEIC 68 (238)
Q Consensus 21 CRIC~ee~~e~~~~Li~PC~C~GSlk~vH~~CL~~Wl~~k~~~~CEiC 68 (238)
|.||++.. .+....||. +.+|..|+.+|++ .+...|++|
T Consensus 1 C~iC~~~~---~~~~~~~C~-----H~~c~~C~~~~~~-~~~~~CP~C 39 (39)
T smart00184 1 CPICLEEL---KDPVVLPCG-----HTFCRSCIRKWLK-SGNNTCPIC 39 (39)
T ss_pred CCcCccCC---CCcEEecCC-----ChHHHHHHHHHHH-hCcCCCCCC
Confidence 67898873 235788877 8899999999998 566788887
No 19
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=97.05 E-value=0.00051 Score=60.40 Aligned_cols=50 Identities=20% Similarity=0.638 Sum_probs=39.9
Q ss_pred CCCCeeeEeccCcccCCCccccccccCCccccccHHHHHHHHHhc--------------CCcccccccCccc
Q 026480 16 ETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEK--------------GNTTCEICLQEYG 73 (238)
Q Consensus 16 ~~~~~CRIC~ee~~e~~~~Li~PC~C~GSlk~vH~~CL~~Wl~~k--------------~~~~CEiCk~~y~ 73 (238)
++.-.|.||++...+ +.++||. |.+...||.+|+..+ +...||+|+..+.
T Consensus 16 ~~~~~CpICld~~~d---PVvT~CG-----H~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is 79 (193)
T PLN03208 16 GGDFDCNICLDQVRD---PVVTLCG-----HLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVS 79 (193)
T ss_pred CCccCCccCCCcCCC---cEEcCCC-----chhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCC
Confidence 355789999987543 5888887 999999999998642 3568999998864
No 20
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=97.05 E-value=0.00038 Score=47.54 Aligned_cols=45 Identities=27% Similarity=0.640 Sum_probs=36.3
Q ss_pred CeeeEeccCcccCCCccccccccCCcccc-ccHHHHHHHHHhcCCcccccccCccc
Q 026480 19 SHCRICHEEEFESCNSLEAPCACSGTVKF-AHRDCIQRWCYEKGNTTCEICLQEYG 73 (238)
Q Consensus 19 ~~CRIC~ee~~e~~~~Li~PC~C~GSlk~-vH~~CL~~Wl~~k~~~~CEiCk~~y~ 73 (238)
..|.||++...+ .+..||+ |. +-..|+.+|++ +...|++|+++++
T Consensus 3 ~~C~iC~~~~~~---~~~~pCg-----H~~~C~~C~~~~~~--~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 3 EECPICFENPRD---VVLLPCG-----HLCFCEECAERLLK--RKKKCPICRQPIE 48 (50)
T ss_dssp SB-TTTSSSBSS---EEEETTC-----EEEEEHHHHHHHHH--TTSBBTTTTBB-S
T ss_pred CCCccCCccCCc---eEEeCCC-----ChHHHHHHhHHhcc--cCCCCCcCChhhc
Confidence 579999987543 5889998 77 99999999998 6779999998764
No 21
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.94 E-value=9.8e-05 Score=77.23 Aligned_cols=63 Identities=22% Similarity=0.493 Sum_probs=44.6
Q ss_pred ecCCCCCCCCCeeeEeccCcccCCCcc-ccccc-cCCccccccHHHHHHHHHhcCCcccccccCcccC
Q 026480 9 EDFKSNPETTSHCRICHEEEFESCNSL-EAPCA-CSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGP 74 (238)
Q Consensus 9 ~d~~~~s~~~~~CRIC~ee~~e~~~~L-i~PC~-C~GSlk~vH~~CL~~Wl~~k~~~~CEiCk~~y~~ 74 (238)
.+..-.-.+..+|.||..--.--+..+ -.-|. |+ +-+|..||-+|++++++.+||+|+..+..
T Consensus 1460 kNi~~~fsG~eECaICYsvL~~vdr~lPskrC~TCk---nKFH~~CLyKWf~Ss~~s~CPlCRseitf 1524 (1525)
T COG5219 1460 KNIDEKFSGHEECAICYSVLDMVDRSLPSKRCATCK---NKFHTRCLYKWFASSARSNCPLCRSEITF 1524 (1525)
T ss_pred hhhhhhcCCcchhhHHHHHHHHHhccCCccccchhh---hhhhHHHHHHHHHhcCCCCCCcccccccc
Confidence 344444567889999986432101112 23454 66 78999999999999999999999977653
No 22
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=96.90 E-value=0.00055 Score=44.48 Aligned_cols=41 Identities=32% Similarity=0.861 Sum_probs=34.5
Q ss_pred eeEeccCcccCCCccccccccCCccccccHHHHHHHHHhcCCcccccc
Q 026480 21 CRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEIC 68 (238)
Q Consensus 21 CRIC~ee~~e~~~~Li~PC~C~GSlk~vH~~CL~~Wl~~k~~~~CEiC 68 (238)
|.||++...+. ....||. |.+...|+.+|++.++...|++|
T Consensus 1 C~iC~~~~~~~--~~~~~C~-----H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDP--VILLPCG-----HSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSE--EEETTTS-----EEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCC--CEEecCC-----CcchHHHHHHHHHhcCCccCCcC
Confidence 78898876543 2489998 99999999999998888899988
No 23
>PHA02926 zinc finger-like protein; Provisional
Probab=96.88 E-value=0.0009 Score=60.33 Aligned_cols=60 Identities=23% Similarity=0.476 Sum_probs=43.5
Q ss_pred CCCeeeEeccCcccC------CCccccccccCCccccccHHHHHHHHHhc----CCcccccccCcccCCccCCCCCc
Q 026480 17 TTSHCRICHEEEFES------CNSLEAPCACSGTVKFAHRDCIQRWCYEK----GNTTCEICLQEYGPGYTAPSKKS 83 (238)
Q Consensus 17 ~~~~CRIC~ee~~e~------~~~Li~PC~C~GSlk~vH~~CL~~Wl~~k----~~~~CEiCk~~y~~~yt~P~~~~ 83 (238)
...+|-||++.-.+. .-.+..||+ |.+...|+.+|.+.+ ....||+|+..|... .|.+-+
T Consensus 169 kE~eCgICmE~I~eK~~~~eRrFGIL~~Cn-----HsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I--~pSrf~ 238 (242)
T PHA02926 169 KEKECGICYEVVYSKRLENDRYFGLLDSCN-----HIFCITCINIWHRTRRETGASDNCPICRTRFRNI--TMSKFY 238 (242)
T ss_pred CCCCCccCccccccccccccccccccCCCC-----chHHHHHHHHHHHhccccCcCCcCCCCcceeeee--ccccce
Confidence 568999999874221 123567877 999999999999864 246799999998743 455544
No 24
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.68 E-value=0.0011 Score=65.72 Aligned_cols=49 Identities=29% Similarity=0.682 Sum_probs=40.1
Q ss_pred CCCeeeEeccCcccCCC--ccccccccCCccccccHHHHHHHHHhcCCcccccccCcc
Q 026480 17 TTSHCRICHEEEFESCN--SLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEY 72 (238)
Q Consensus 17 ~~~~CRIC~ee~~e~~~--~Li~PC~C~GSlk~vH~~CL~~Wl~~k~~~~CEiCk~~y 72 (238)
....|.||.++...+.+ +-..||. |.+|..||++|++. ..+||+|+..+
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~C~-----Hifh~~CL~~W~er--~qtCP~CR~~~ 340 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLPCG-----HIFHDSCLRSWFER--QQTCPTCRTVL 340 (543)
T ss_pred cCCeeeeechhhccccccccceeecc-----cchHHHHHHHHHHH--hCcCCcchhhh
Confidence 36799999998765433 5688888 99999999999987 56999999844
No 25
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.33 E-value=0.0044 Score=57.51 Aligned_cols=52 Identities=35% Similarity=0.892 Sum_probs=42.6
Q ss_pred CCCCCCCeeeEeccCcccCCCccccccccCCccccccHHHHHHHHHhcCCcccccccCcccC
Q 026480 13 SNPETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGP 74 (238)
Q Consensus 13 ~~s~~~~~CRIC~ee~~e~~~~Li~PC~C~GSlk~vH~~CL~~Wl~~k~~~~CEiCk~~y~~ 74 (238)
+.+++...|-+|++.-.. |--+||. |.+=-.|++.|+.++. .||+|+..++|
T Consensus 234 ~i~~a~~kC~LCLe~~~~---pSaTpCG-----HiFCWsCI~~w~~ek~--eCPlCR~~~~p 285 (293)
T KOG0317|consen 234 SIPEATRKCSLCLENRSN---PSATPCG-----HIFCWSCILEWCSEKA--ECPLCREKFQP 285 (293)
T ss_pred cCCCCCCceEEEecCCCC---CCcCcCc-----chHHHHHHHHHHcccc--CCCcccccCCC
Confidence 344667899999998643 4579998 8999999999998765 59999988864
No 26
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.24 E-value=0.0033 Score=62.24 Aligned_cols=53 Identities=25% Similarity=0.569 Sum_probs=39.9
Q ss_pred CCCCCeeeEeccCcc------c--------CCCccccccccCCccccccHHHHHHHHHhcCCcccccccCccc
Q 026480 15 PETTSHCRICHEEEF------E--------SCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (238)
Q Consensus 15 s~~~~~CRIC~ee~~------e--------~~~~Li~PC~C~GSlk~vH~~CL~~Wl~~k~~~~CEiCk~~y~ 73 (238)
-+....|-||...-+ + ..+-|.+||+ +.+|+.||++|.+.. +..|+.|+.+.+
T Consensus 568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~-----HifH~~CL~~WMd~y-kl~CPvCR~pLP 634 (636)
T KOG0828|consen 568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCH-----HIFHRQCLLQWMDTY-KLICPVCRCPLP 634 (636)
T ss_pred hhccccceEeccccceeeccCcchhhhhhhhccccccchH-----HHHHHHHHHHHHhhh-cccCCccCCCCC
Confidence 446689999986431 1 1245778999 999999999999743 379999997664
No 27
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=95.98 E-value=0.0034 Score=40.80 Aligned_cols=38 Identities=29% Similarity=0.858 Sum_probs=29.6
Q ss_pred eeEeccCcccCCCc-cccccccCCccccccHHHHHHHHHhcCCcccccc
Q 026480 21 CRICHEEEFESCNS-LEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEIC 68 (238)
Q Consensus 21 CRIC~ee~~e~~~~-Li~PC~C~GSlk~vH~~CL~~Wl~~k~~~~CEiC 68 (238)
|.||++...+ + ...||. |.+...|+.+|++. +.+|++|
T Consensus 1 C~iC~~~~~~---~~~~~~CG-----H~fC~~C~~~~~~~--~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD---PVVVTPCG-----HSFCKECIEKYLEK--NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS---EEEECTTS-----EEEEHHHHHHHHHC--TSB-TTT
T ss_pred CCCCCCcccC---cCEECCCC-----CchhHHHHHHHHHC--cCCCcCC
Confidence 7789876543 5 578888 99999999999977 4799987
No 28
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=95.97 E-value=0.0055 Score=40.97 Aligned_cols=44 Identities=25% Similarity=0.616 Sum_probs=37.0
Q ss_pred eeeEeccCcccCCCccccccccCCccccccHHHHHHHHHhcCCcccccccC
Q 026480 20 HCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQ 70 (238)
Q Consensus 20 ~CRIC~ee~~e~~~~Li~PC~C~GSlk~vH~~CL~~Wl~~k~~~~CEiCk~ 70 (238)
.|-||++...+...+++++|. +.+...|+.++. .....|++|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~Cg-----H~~C~~C~~~~~--~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCG-----HIFCEKCLKKLK--GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccC-----CHHHHHHHHhhc--CCCCCCcCCCC
Confidence 488999888545567899998 999999999999 66789999984
No 29
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=95.65 E-value=0.013 Score=40.90 Aligned_cols=44 Identities=20% Similarity=0.292 Sum_probs=36.0
Q ss_pred eeeEeccCcccCCCccccccccCCccccccHHHHHHHHHhcCCcccccccCccc
Q 026480 20 HCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (238)
Q Consensus 20 ~CRIC~ee~~e~~~~Li~PC~C~GSlk~vH~~CL~~Wl~~k~~~~CEiCk~~y~ 73 (238)
.|.||.+.-.+ |...||. +.+-+.|+.+|++. +.+||+|+..+.
T Consensus 3 ~Cpi~~~~~~~---Pv~~~~G-----~v~~~~~i~~~~~~--~~~cP~~~~~~~ 46 (63)
T smart00504 3 LCPISLEVMKD---PVILPSG-----QTYERRAIEKWLLS--HGTDPVTGQPLT 46 (63)
T ss_pred CCcCCCCcCCC---CEECCCC-----CEEeHHHHHHHHHH--CCCCCCCcCCCC
Confidence 68999887543 5888875 88999999999977 568999998774
No 30
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=95.57 E-value=0.018 Score=49.59 Aligned_cols=51 Identities=18% Similarity=0.322 Sum_probs=29.5
Q ss_pred CchHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh--hhhhhcccccc-cCCCCCc
Q 026480 163 DYPFALVTVLLLRACGIILPMYVLMRTITAIHNS--IRREYHHVTYD-DETSNSD 214 (238)
Q Consensus 163 ~~~ft~l~v~~lr~~G~llp~Yi~~~~~~~lq~r--~~r~~~~~~~~-~~~~~~~ 214 (238)
+.++.+=.++++-.+-.++-.|+++|++. +-|| ..|.|.++... +...|..
T Consensus 90 d~~~l~R~~~Vl~g~s~l~i~yfvir~~R-~r~~~rktRkYgvl~~~~~~~Em~p 143 (163)
T PF06679_consen 90 DSPMLKRALYVLVGLSALAILYFVIRTFR-LRRRNRKTRKYGVLTTRAENVEMAP 143 (163)
T ss_pred CccchhhhHHHHHHHHHHHHHHHHHHHHh-hccccccceeecccCCCcccceecc
Confidence 33444444444444555566788899887 3332 22678887766 5555553
No 31
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.47 E-value=0.01 Score=57.36 Aligned_cols=46 Identities=24% Similarity=0.661 Sum_probs=33.5
Q ss_pred CCeeeEeccCcccCCCcc--ccccccCCccccccHHHHHHHHHhcCC-ccccccc
Q 026480 18 TSHCRICHEEEFESCNSL--EAPCACSGTVKFAHRDCIQRWCYEKGN-TTCEICL 69 (238)
Q Consensus 18 ~~~CRIC~ee~~e~~~~L--i~PC~C~GSlk~vH~~CL~~Wl~~k~~-~~CEiCk 69 (238)
...|.|| ....+....+ +..|. +.+|..||.+|+..-.. +.||||+
T Consensus 4 ~A~C~Ic-~d~~p~~~~l~~i~~cG-----hifh~~cl~qwfe~~Ps~R~cpic~ 52 (465)
T KOG0827|consen 4 MAECHIC-IDGRPNDHELGPIGTCG-----HIFHTTCLTQWFEGDPSNRGCPICQ 52 (465)
T ss_pred cceeeEe-ccCCccccccccccchh-----hHHHHHHHHHHHccCCccCCCCcee
Confidence 4689999 4444433334 33344 89999999999987654 7999999
No 32
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.26 E-value=0.0073 Score=46.38 Aligned_cols=51 Identities=24% Similarity=0.438 Sum_probs=36.5
Q ss_pred eeeEeccCccc---------CCCccccccccCCccccccHHHHHHHHHhcC-CcccccccCcccC
Q 026480 20 HCRICHEEEFE---------SCNSLEAPCACSGTVKFAHRDCIQRWCYEKG-NTTCEICLQEYGP 74 (238)
Q Consensus 20 ~CRIC~ee~~e---------~~~~Li~PC~C~GSlk~vH~~CL~~Wl~~k~-~~~CEiCk~~y~~ 74 (238)
.|-||..+.+. ++-||+-- .|. +.+|..|+.+|++.+. ...||+|++.|++
T Consensus 22 ~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G-~C~---h~fh~hCI~~wl~~~tsq~~CPmcRq~~~~ 82 (84)
T KOG1493|consen 22 TCGICRMPFDGCCPDCKLPGDDCPLVWG-YCL---HAFHAHCILKWLNTPTSQGQCPMCRQTWQF 82 (84)
T ss_pred ccceEecccCCcCCCCcCCCCCCccHHH-HHH---HHHHHHHHHHHhcCccccccCCcchheeEe
Confidence 78888765322 12344333 454 8899999999998764 5899999999864
No 33
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.82 E-value=0.034 Score=50.22 Aligned_cols=50 Identities=18% Similarity=0.518 Sum_probs=41.8
Q ss_pred CCCCCeeeEeccCcccCCCccccccccCCccccccHHHHHHHHHhcC-CcccccccCcc
Q 026480 15 PETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKG-NTTCEICLQEY 72 (238)
Q Consensus 15 s~~~~~CRIC~ee~~e~~~~Li~PC~C~GSlk~vH~~CL~~Wl~~k~-~~~CEiCk~~y 72 (238)
.+..-.|-||++...+ +.+++|. |.+==-||-||+..+. ...||+||...
T Consensus 44 ~~~~FdCNICLd~akd---PVvTlCG-----HLFCWpClyqWl~~~~~~~~cPVCK~~V 94 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKD---PVVTLCG-----HLFCWPCLYQWLQTRPNSKECPVCKAEV 94 (230)
T ss_pred CCCceeeeeeccccCC---CEEeecc-----cceehHHHHHHHhhcCCCeeCCcccccc
Confidence 4566789999998654 6999998 8899999999998765 56779999875
No 34
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=94.49 E-value=0.031 Score=43.27 Aligned_cols=27 Identities=33% Similarity=0.614 Sum_probs=24.2
Q ss_pred ccccHHHHHHHHHhcCCcccccccCcccC
Q 026480 46 KFAHRDCIQRWCYEKGNTTCEICLQEYGP 74 (238)
Q Consensus 46 k~vH~~CL~~Wl~~k~~~~CEiCk~~y~~ 74 (238)
+.+|..|+.+|++.++ .||++++.|..
T Consensus 56 HaFH~HCI~rWL~Tk~--~CPld~q~w~~ 82 (88)
T COG5194 56 HAFHDHCIYRWLDTKG--VCPLDRQTWVL 82 (88)
T ss_pred hHHHHHHHHHHHhhCC--CCCCCCceeEE
Confidence 8899999999999866 89999998864
No 35
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.09 E-value=0.035 Score=53.71 Aligned_cols=48 Identities=23% Similarity=0.474 Sum_probs=39.0
Q ss_pred CCCCeeeEeccCcccCCCccccccccCCccccccHHHHHHHHHhcCCcccccccCccc
Q 026480 16 ETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (238)
Q Consensus 16 ~~~~~CRIC~ee~~e~~~~Li~PC~C~GSlk~vH~~CL~~Wl~~k~~~~CEiCk~~y~ 73 (238)
+....|.||++.... +.++||. |.+...|+..|+..+ ..|++|+..+.
T Consensus 24 e~~l~C~IC~d~~~~---PvitpCg-----H~FCs~CI~~~l~~~--~~CP~Cr~~~~ 71 (397)
T TIGR00599 24 DTSLRCHICKDFFDV---PVLTSCS-----HTFCSLCIRRCLSNQ--PKCPLCRAEDQ 71 (397)
T ss_pred ccccCCCcCchhhhC---ccCCCCC-----CchhHHHHHHHHhCC--CCCCCCCCccc
Confidence 355799999987643 5788988 999999999999764 48999998875
No 36
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.84 E-value=0.018 Score=53.43 Aligned_cols=59 Identities=24% Similarity=0.542 Sum_probs=43.1
Q ss_pred CCCCCCCCCeeeEeccCcccC-------CCccccccccCCccccccHHHHHHHHHhcCCcccccccCcccC
Q 026480 11 FKSNPETTSHCRICHEEEFES-------CNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGP 74 (238)
Q Consensus 11 ~~~~s~~~~~CRIC~ee~~e~-------~~~Li~PC~C~GSlk~vH~~CL~~Wl~~k~~~~CEiCk~~y~~ 74 (238)
...+.-+...|-+|-..-..+ ++.-...|+ +-+|.-|++-|+--.++.+||.||.+...
T Consensus 217 lPtkhl~d~vCaVCg~~~~~s~~eegvienty~LsCn-----HvFHEfCIrGWcivGKkqtCPYCKekVdl 282 (328)
T KOG1734|consen 217 LPTKHLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCN-----HVFHEFCIRGWCIVGKKQTCPYCKEKVDL 282 (328)
T ss_pred CCCCCCCcchhHhhcchheeecchhhhhhhheeeecc-----cchHHHhhhhheeecCCCCCchHHHHhhH
Confidence 344555678999996542221 133455666 99999999999998889999999977653
No 37
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=93.62 E-value=0.022 Score=55.89 Aligned_cols=48 Identities=23% Similarity=0.546 Sum_probs=35.0
Q ss_pred CCCeeeEeccCcccC-CCccccccccCCccccccHHHHHHHHHhcCCcccccccCccc
Q 026480 17 TTSHCRICHEEEFES-CNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (238)
Q Consensus 17 ~~~~CRIC~ee~~e~-~~~Li~PC~C~GSlk~vH~~CL~~Wl~~k~~~~CEiCk~~y~ 73 (238)
+.+.|.+|++.-+++ .+.+-.+|. |-+|-.||++|-. .+|++|++.-.
T Consensus 174 ELPTCpVCLERMD~s~~gi~t~~c~-----Hsfh~~cl~~w~~----~scpvcR~~q~ 222 (493)
T KOG0804|consen 174 ELPTCPVCLERMDSSTTGILTILCN-----HSFHCSCLMKWWD----SSCPVCRYCQS 222 (493)
T ss_pred cCCCcchhHhhcCccccceeeeecc-----cccchHHHhhccc----CcChhhhhhcC
Confidence 559999999886554 334456665 8999999999974 47888875433
No 38
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=93.36 E-value=0.047 Score=37.02 Aligned_cols=41 Identities=27% Similarity=0.631 Sum_probs=23.4
Q ss_pred eeEeccCcccCCCccccccccCCccccccHHHHHHHHHhc--CCcccc
Q 026480 21 CRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEK--GNTTCE 66 (238)
Q Consensus 21 CRIC~ee~~e~~~~Li~PC~C~GSlk~vH~~CL~~Wl~~k--~~~~CE 66 (238)
|-||.+-..+.+.|+..||. |-+=++||+++.+.+ +..+|+
T Consensus 1 CpIc~e~~~~~n~P~~L~CG-----H~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKEFSTEENPPMVLPCG-----HVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT----TTSS-EEE-SSS------EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCccccccCCCCCCEEEeCc-----cHHHHHHHHHHHhcCCCCeeeCc
Confidence 67888844445567899987 889999999999875 456664
No 39
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=91.16 E-value=0.074 Score=51.93 Aligned_cols=47 Identities=26% Similarity=0.667 Sum_probs=39.4
Q ss_pred CeeeEeccCcccCCCccccccccCCccccccHHHHHHHHHhcCCcccccccCccc
Q 026480 19 SHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (238)
Q Consensus 19 ~~CRIC~ee~~e~~~~Li~PC~C~GSlk~vH~~CL~~Wl~~k~~~~CEiCk~~y~ 73 (238)
..|.||-+.+.+ .-+-||. +..-..||-.|..+.+..+|+.|+...+
T Consensus 370 eLCKICaendKd---vkIEPCG-----HLlCt~CLa~WQ~sd~gq~CPFCRcEIK 416 (563)
T KOG1785|consen 370 ELCKICAENDKD---VKIEPCG-----HLLCTSCLAAWQDSDEGQTCPFCRCEIK 416 (563)
T ss_pred HHHHHhhccCCC---ccccccc-----chHHHHHHHhhcccCCCCCCCceeeEec
Confidence 579999776543 4689998 8888999999999888999999996653
No 40
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=90.43 E-value=0.16 Score=48.04 Aligned_cols=52 Identities=21% Similarity=0.452 Sum_probs=38.2
Q ss_pred CCCeeeEeccCcccCCCccccccccCCccccccHHHHHHHHHhc---------------------CCcccccccCccc
Q 026480 17 TTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEK---------------------GNTTCEICLQEYG 73 (238)
Q Consensus 17 ~~~~CRIC~ee~~e~~~~Li~PC~C~GSlk~vH~~CL~~Wl~~k---------------------~~~~CEiCk~~y~ 73 (238)
...+|-||+=...++....+++|. +|.|..||.+.++.- -...|++|+.+..
T Consensus 114 p~gqCvICLygfa~~~~ft~T~C~-----Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~ 186 (368)
T KOG4445|consen 114 PNGQCVICLYGFASSPAFTVTACD-----HYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK 186 (368)
T ss_pred CCCceEEEEEeecCCCceeeehhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence 445788887665555445688988 999999999988651 1467999996653
No 41
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.38 E-value=0.23 Score=47.37 Aligned_cols=50 Identities=26% Similarity=0.624 Sum_probs=35.3
Q ss_pred CCCCCCeeeEeccCcccCCCccccccccCCcccc-ccHHHHHHHHHhcCCcccccccCccc
Q 026480 14 NPETTSHCRICHEEEFESCNSLEAPCACSGTVKF-AHRDCIQRWCYEKGNTTCEICLQEYG 73 (238)
Q Consensus 14 ~s~~~~~CRIC~ee~~e~~~~Li~PC~C~GSlk~-vH~~CL~~Wl~~k~~~~CEiCk~~y~ 73 (238)
.+++.++|=||+.+..+ .++.||+ |. .=..|.+...- ....||||++.+.
T Consensus 286 ~~~~gkeCVIClse~rd---t~vLPCR-----HLCLCs~Ca~~Lr~--q~n~CPICRqpi~ 336 (349)
T KOG4265|consen 286 ESESGKECVICLSESRD---TVVLPCR-----HLCLCSGCAKSLRY--QTNNCPICRQPIE 336 (349)
T ss_pred cccCCCeeEEEecCCcc---eEEecch-----hhehhHhHHHHHHH--hhcCCCccccchH
Confidence 44678999999988654 4899987 11 23467665552 3568999998875
No 42
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.07 E-value=0.23 Score=48.57 Aligned_cols=51 Identities=20% Similarity=0.579 Sum_probs=39.9
Q ss_pred CCCeeeEeccCcccC-CCccccccccCCccccccHHHHHHHHHhcCCcccccccCc
Q 026480 17 TTSHCRICHEEEFES-CNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQE 71 (238)
Q Consensus 17 ~~~~CRIC~ee~~e~-~~~Li~PC~C~GSlk~vH~~CL~~Wl~~k~~~~CEiCk~~ 71 (238)
....|.||+++..-+ +.-++.| .|. +.+-..|+.+|+-.+-...|++|+..
T Consensus 3 ~g~tcpiclds~~~~g~hr~vsl-~cg---hlFgs~cie~wl~k~~~~~cp~c~~k 54 (463)
T KOG1645|consen 3 CGTTCPICLDSYTTAGNHRIVSL-QCG---HLFGSQCIEKWLGKKTKMQCPLCSGK 54 (463)
T ss_pred ccccCceeeeeeeecCceEEeee-ccc---ccccHHHHHHHHhhhhhhhCcccCCh
Confidence 456899999985443 4446666 666 89999999999976667999999854
No 43
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=89.88 E-value=0.18 Score=33.71 Aligned_cols=40 Identities=28% Similarity=0.664 Sum_probs=28.3
Q ss_pred eeEeccCcccCCCccccccccCCccccccHHHHHHHHHhcCC--cccccc
Q 026480 21 CRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGN--TTCEIC 68 (238)
Q Consensus 21 CRIC~ee~~e~~~~Li~PC~C~GSlk~vH~~CL~~Wl~~k~~--~~CEiC 68 (238)
|.||++--.+ |...+|. +-+=+.||.+|.+..+. ..|++|
T Consensus 1 CpiC~~~~~~---Pv~l~CG-----H~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKD---PVSLPCG-----HSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SS---EEE-SSS-----SEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCC---ccccCCc-----CHHHHHHHHHHHHccCCcCCCCcCC
Confidence 6788877643 6888987 88999999999987654 589887
No 44
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=89.86 E-value=0.15 Score=42.72 Aligned_cols=43 Identities=23% Similarity=0.394 Sum_probs=30.8
Q ss_pred CCCeeeEeccCcccCCCccccccccCCcc-ccccHHHHHHHHHh
Q 026480 17 TTSHCRICHEEEFESCNSLEAPCACSGTV-KFAHRDCIQRWCYE 59 (238)
Q Consensus 17 ~~~~CRIC~ee~~e~~~~Li~PC~C~GSl-k~vH~~CL~~Wl~~ 59 (238)
...+|+||++.-.++.+.+.-+|.-.-.+ |.+|..|+++|-+.
T Consensus 25 ~~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~ 68 (134)
T PF05883_consen 25 CTVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRE 68 (134)
T ss_pred cCeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhh
Confidence 36799999998655455667776643222 46999999999644
No 45
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=89.86 E-value=0.19 Score=40.76 Aligned_cols=26 Identities=27% Similarity=0.599 Sum_probs=22.8
Q ss_pred ccccHHHHHHHHHhcCCcccccccCccc
Q 026480 46 KFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (238)
Q Consensus 46 k~vH~~CL~~Wl~~k~~~~CEiCk~~y~ 73 (238)
+-+|..|+.+|++.++ .||+|.+...
T Consensus 83 HaFH~hCisrWlktr~--vCPLdn~eW~ 108 (114)
T KOG2930|consen 83 HAFHFHCISRWLKTRN--VCPLDNKEWV 108 (114)
T ss_pred hHHHHHHHHHHHhhcC--cCCCcCccee
Confidence 8899999999998754 9999998765
No 46
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=89.74 E-value=1.6 Score=35.12 Aligned_cols=75 Identities=17% Similarity=0.224 Sum_probs=36.2
Q ss_pred CCCCchHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhhhcccccccCCCCCc---------chhhcccCCCCCCccc
Q 026480 160 NTDDYPFALVTVLLLRACGIILPMYVLMRTITAIHNSIRREYHHVTYDDETSNSD---------EEEEEEEDDDDDDEEE 230 (238)
Q Consensus 160 g~~~~~ft~l~v~~lr~~G~llp~Yi~~~~~~~lq~r~~r~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~ 230 (238)
|...|||-.=+|+..-.+-+|+.+-+=|..+..+.... ||+++...+..+.... .-..++|||||-=|..
T Consensus 13 ~g~sW~~LVGVv~~al~~SlLIalaaKC~~~~k~~~SY-~H~rL~e~e~~~~~~g~~~~p~~~~~~~~~~eDDDGFIEDn 91 (102)
T PF15176_consen 13 GGRSWPFLVGVVVTALVTSLLIALAAKCPVWYKYLASY-RHHRLPETEAETYEDGFTENPEVGSQIPDTNEDDDGFIEDN 91 (102)
T ss_pred CCcccHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcc-ccccCCcccccccccccCCCCCccccCCCCCCCCCcccccc
Confidence 34567764444444444455555555555555554443 3333433222111110 0022445777777777
Q ss_pred cCCCC
Q 026480 231 QLDPR 235 (238)
Q Consensus 231 ~~~~~ 235 (238)
-+||.
T Consensus 92 YI~~~ 96 (102)
T PF15176_consen 92 YIQPS 96 (102)
T ss_pred CcCcc
Confidence 77775
No 47
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=89.13 E-value=0.3 Score=34.18 Aligned_cols=46 Identities=26% Similarity=0.512 Sum_probs=20.6
Q ss_pred eeEeccCcccCCCccccccccCCccccccHHHHHHHHHhc--CCcccccccCccc
Q 026480 21 CRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEK--GNTTCEICLQEYG 73 (238)
Q Consensus 21 CRIC~ee~~e~~~~Li~PC~C~GSlk~vH~~CL~~Wl~~k--~~~~CEiCk~~y~ 73 (238)
|.+|-++.+. .+.-..||.|. ++-|+.=|.+-+ .+..||-||.+|.
T Consensus 1 cp~C~e~~d~-~d~~~~PC~Cg------f~IC~~C~~~i~~~~~g~CPgCr~~Y~ 48 (48)
T PF14570_consen 1 CPLCDEELDE-TDKDFYPCECG------FQICRFCYHDILENEGGRCPGCREPYK 48 (48)
T ss_dssp -TTTS-B--C-CCTT--SSTTS----------HHHHHHHTTSS-SB-TTT--B--
T ss_pred CCCccccccc-CCCccccCcCC------CcHHHHHHHHHHhccCCCCCCCCCCCC
Confidence 5677666533 33468999997 345555565544 4789999999884
No 48
>PLN02189 cellulose synthase
Probab=88.29 E-value=0.63 Score=50.00 Aligned_cols=53 Identities=25% Similarity=0.521 Sum_probs=39.6
Q ss_pred CCCeeeEeccCcc-cCCCccccccc-cCCccccccHHHHHHHHHhcCCcccccccCccc
Q 026480 17 TTSHCRICHEEEF-ESCNSLEAPCA-CSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (238)
Q Consensus 17 ~~~~CRIC~ee~~-e~~~~Li~PC~-C~GSlk~vH~~CL~~Wl~~k~~~~CEiCk~~y~ 73 (238)
+...|+||-++-. +.++.....|+ |. --|=+.|. ..-.+.|+..|+.||++|+
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~---fpvCr~Cy-eyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECG---FPVCRPCY-EYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCC---Cccccchh-hhhhhcCCccCcccCCchh
Confidence 4469999987732 23445678898 76 44889998 4445568999999999997
No 49
>PLN02436 cellulose synthase A
Probab=86.60 E-value=0.88 Score=49.13 Aligned_cols=55 Identities=24% Similarity=0.534 Sum_probs=40.4
Q ss_pred CCCCeeeEeccCc-ccCCCccccccc-cCCccccccHHHHHHHHHhcCCcccccccCcccC
Q 026480 16 ETTSHCRICHEEE-FESCNSLEAPCA-CSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGP 74 (238)
Q Consensus 16 ~~~~~CRIC~ee~-~e~~~~Li~PC~-C~GSlk~vH~~CL~~Wl~~k~~~~CEiCk~~y~~ 74 (238)
-+...|.||-++- -..++.+...|+ |. --|=+.|. ..-.+.|+..|+.||++|+-
T Consensus 34 ~~~~iCqICGD~Vg~t~dGe~FVACn~C~---fpvCr~Cy-eyer~eg~~~Cpqckt~Y~r 90 (1094)
T PLN02436 34 LSGQTCQICGDEIELTVDGEPFVACNECA---FPVCRPCY-EYERREGNQACPQCKTRYKR 90 (1094)
T ss_pred cCCccccccccccCcCCCCCEEEeeccCC---Cccccchh-hhhhhcCCccCcccCCchhh
Confidence 3556999998773 223445778888 75 44889998 44455689999999999984
No 50
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=86.42 E-value=0.53 Score=47.67 Aligned_cols=62 Identities=21% Similarity=0.543 Sum_probs=49.4
Q ss_pred cCCCCCCCCCeeeEeccCcccCCCccccccccCCccccccHHHHHHHHHh---cCCcccccccCcccCCccCC
Q 026480 10 DFKSNPETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYE---KGNTTCEICLQEYGPGYTAP 79 (238)
Q Consensus 10 d~~~~s~~~~~CRIC~ee~~e~~~~Li~PC~C~GSlk~vH~~CL~~Wl~~---k~~~~CEiCk~~y~~~yt~P 79 (238)
+..+...+..+|.+|++..++ .+++-|+ +-+-+.|+..++.. +.+.+||.|........+.|
T Consensus 528 n~~~enk~~~~C~lc~d~aed---~i~s~Ch-----H~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDlse~ 592 (791)
T KOG1002|consen 528 NLPDENKGEVECGLCHDPAED---YIESSCH-----HKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLSEP 592 (791)
T ss_pred CCCccccCceeecccCChhhh---hHhhhhh-----HHHHHHHHHHHHHhhhcccCCCCccccccccccccch
Confidence 445556678999999998654 4889888 78899999999865 45799999998887766654
No 51
>PF14851 FAM176: FAM176 family
Probab=85.47 E-value=1.3 Score=37.88 Aligned_cols=13 Identities=23% Similarity=0.488 Sum_probs=5.8
Q ss_pred HHHhhhhHHHHHH
Q 026480 174 LRACGIILPMYVL 186 (238)
Q Consensus 174 lr~~G~llp~Yi~ 186 (238)
.-.+|+||-.-++
T Consensus 29 gVC~GLlLtLcll 41 (153)
T PF14851_consen 29 GVCAGLLLTLCLL 41 (153)
T ss_pred HHHHHHHHHHHHH
Confidence 3344554444444
No 52
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=85.43 E-value=0.87 Score=42.95 Aligned_cols=50 Identities=14% Similarity=0.443 Sum_probs=36.8
Q ss_pred CeeeEeccCcccC--CCccccccccCCccccccHHHHHHHHHhcCCcccccccCcccC
Q 026480 19 SHCRICHEEEFES--CNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGP 74 (238)
Q Consensus 19 ~~CRIC~ee~~e~--~~~Li~PC~C~GSlk~vH~~CL~~Wl~~k~~~~CEiCk~~y~~ 74 (238)
..|.+|....--+ ..-+++||. |-+=.+|+.+.+. ++...||.|+..+..
T Consensus 4 ~~CP~Ck~~~y~np~~kl~i~~CG-----H~~C~sCv~~l~~-~~~~~CP~C~~~lrk 55 (309)
T TIGR00570 4 QGCPRCKTTKYRNPSLKLMVNVCG-----HTLCESCVDLLFV-RGSGSCPECDTPLRK 55 (309)
T ss_pred CCCCcCCCCCccCcccccccCCCC-----CcccHHHHHHHhc-CCCCCCCCCCCccch
Confidence 5799999864322 223677776 8888999999764 466799999977653
No 53
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=84.66 E-value=0.6 Score=34.30 Aligned_cols=45 Identities=22% Similarity=0.293 Sum_probs=31.2
Q ss_pred eeeEeccCcccCCCccccccccCCccccccHHHHHHHHHhcCCcccccccCccc
Q 026480 20 HCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (238)
Q Consensus 20 ~CRIC~ee~~e~~~~Li~PC~C~GSlk~vH~~CL~~Wl~~k~~~~CEiCk~~y~ 73 (238)
.|-|+++--.+ |.+.|+. +.+=+.|+.+|++. +..+|++|+....
T Consensus 6 ~CpIt~~lM~d---PVi~~~G-----~tyer~~I~~~l~~-~~~~~P~t~~~l~ 50 (73)
T PF04564_consen 6 LCPITGELMRD---PVILPSG-----HTYERSAIERWLEQ-NGGTDPFTRQPLS 50 (73)
T ss_dssp B-TTTSSB-SS---EEEETTS-----EEEEHHHHHHHHCT-TSSB-TTT-SB-S
T ss_pred CCcCcCcHhhC---ceeCCcC-----CEEcHHHHHHHHHc-CCCCCCCCCCcCC
Confidence 57777665433 5788866 78999999999977 5679999986664
No 54
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=84.21 E-value=4.3 Score=32.65 Aligned_cols=46 Identities=35% Similarity=0.587 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHhC---CCCCchHHHHHHHHHHHhhhhHHHHHHHH
Q 026480 142 LTFTVLLLVKHLFAVLTG---NTDDYPFALVTVLLLRACGIILPMYVLMR 188 (238)
Q Consensus 142 li~~~lLllrh~~~~~~~---g~~~~~ft~l~v~~lr~~G~llp~Yi~~~ 188 (238)
++++++++++-++....- .-+.|||.+|++++-=.|.++-|+ ||+.
T Consensus 8 ~~~~~~~~~Wi~~N~~~~~~~~fDpyPFilLnl~lS~~Aa~~ap~-Ilms 56 (108)
T PF06210_consen 8 IIFTVFLAVWILLNILAPPRPAFDPYPFILLNLVLSLEAAYQAPL-ILMS 56 (108)
T ss_pred HHHHHHHHHHHHHHhhccccCCCCCccHHHHHHHHHHHHHHHHHH-HHHH
Confidence 455566666666665432 358999999998876666666665 4443
No 55
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.83 E-value=0.56 Score=39.36 Aligned_cols=45 Identities=29% Similarity=0.578 Sum_probs=38.7
Q ss_pred CCCCeeeEeccCcccCCCccccccccCCccccccHHHHHHHHHhcCCcccccccC
Q 026480 16 ETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQ 70 (238)
Q Consensus 16 ~~~~~CRIC~ee~~e~~~~Li~PC~C~GSlk~vH~~CL~~Wl~~k~~~~CEiCk~ 70 (238)
+....|.||++...++ .+.||. |.+=+.|+..+.. ....||.|+.
T Consensus 11 ~~~~~C~iC~~~~~~p---~~l~C~-----H~~c~~C~~~~~~--~~~~Cp~cr~ 55 (386)
T KOG2177|consen 11 QEELTCPICLEYFREP---VLLPCG-----HNFCRACLTRSWE--GPLSCPVCRP 55 (386)
T ss_pred cccccChhhHHHhhcC---cccccc-----chHhHHHHHHhcC--CCcCCcccCC
Confidence 4678999999987654 789998 8899999999998 7799999994
No 56
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=82.67 E-value=1.5 Score=33.74 Aligned_cols=55 Identities=22% Similarity=0.497 Sum_probs=23.3
Q ss_pred CCCCeeeEeccCc-ccCCCccccccc-cCCccccccHHHHHHHHHhcCCcccccccCcccC
Q 026480 16 ETTSHCRICHEEE-FESCNSLEAPCA-CSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGP 74 (238)
Q Consensus 16 ~~~~~CRIC~ee~-~e~~~~Li~PC~-C~GSlk~vH~~CL~~Wl~~k~~~~CEiCk~~y~~ 74 (238)
-+...|.||-+.- ...++.+..-|+ |. --+=+.|..-=.+ .|+..|+.||++|..
T Consensus 7 ~~~qiCqiCGD~VGl~~~Ge~FVAC~eC~---fPvCr~CyEYErk-eg~q~CpqCkt~ykr 63 (80)
T PF14569_consen 7 LNGQICQICGDDVGLTENGEVFVACHECA---FPVCRPCYEYERK-EGNQVCPQCKTRYKR 63 (80)
T ss_dssp -SS-B-SSS--B--B-SSSSB--S-SSS--------HHHHHHHHH-TS-SB-TTT--B---
T ss_pred cCCcccccccCccccCCCCCEEEEEcccC---CccchhHHHHHhh-cCcccccccCCCccc
Confidence 3567999997762 222344656666 54 4588899876554 378999999999974
No 57
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=82.54 E-value=1 Score=38.03 Aligned_cols=55 Identities=20% Similarity=0.510 Sum_probs=42.9
Q ss_pred CCCeeeEeccCcccCCCccccccccCCccccccHHHHHHHHHhcCCcccccccCcccC
Q 026480 17 TTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGP 74 (238)
Q Consensus 17 ~~~~CRIC~ee~~e~~~~Li~PC~C~GSlk~vH~~CL~~Wl~~k~~~~CEiCk~~y~~ 74 (238)
..-+|-||++...|. .+..|=.|-|. +.-.-=|.+-|-..+-...||.||+.|+.
T Consensus 79 ~lYeCnIC~etS~ee--~FLKPneCCgY-~iCn~Cya~LWK~~~~ypvCPvCkTSFKs 133 (140)
T PF05290_consen 79 KLYECNICKETSAEE--RFLKPNECCGY-SICNACYANLWKFCNLYPVCPVCKTSFKS 133 (140)
T ss_pred CceeccCcccccchh--hcCCcccccch-HHHHHHHHHHHHHcccCCCCCcccccccc
Confidence 456899999887654 48899888872 34455567889888888999999999974
No 58
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=80.35 E-value=0.79 Score=43.37 Aligned_cols=47 Identities=23% Similarity=0.448 Sum_probs=37.5
Q ss_pred CCCeeeEeccCcccCCCccccccccCCccccccHHHHHHHHHhcCCcccccccCccc
Q 026480 17 TTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (238)
Q Consensus 17 ~~~~CRIC~ee~~e~~~~Li~PC~C~GSlk~vH~~CL~~Wl~~k~~~~CEiCk~~y~ 73 (238)
.+..||||++--.- +.++||. |-+-.-|+.+.+.. .-.||+|+..+.
T Consensus 24 s~lrC~IC~~~i~i---p~~TtCg-----HtFCslCIR~hL~~--qp~CP~Cr~~~~ 70 (391)
T COG5432 24 SMLRCRICDCRISI---PCETTCG-----HTFCSLCIRRHLGT--QPFCPVCREDPC 70 (391)
T ss_pred hHHHhhhhhheeec---ceecccc-----cchhHHHHHHHhcC--CCCCccccccHH
Confidence 56789999887543 5789988 77888999999965 458999997764
No 59
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.28 E-value=1.9 Score=41.26 Aligned_cols=51 Identities=22% Similarity=0.521 Sum_probs=36.7
Q ss_pred CCCeeeEeccCcccCC-----CccccccccCCccccccHHHHHHHHHhcC-----CcccccccCcc
Q 026480 17 TTSHCRICHEEEFESC-----NSLEAPCACSGTVKFAHRDCIQRWCYEKG-----NTTCEICLQEY 72 (238)
Q Consensus 17 ~~~~CRIC~ee~~e~~-----~~Li~PC~C~GSlk~vH~~CL~~Wl~~k~-----~~~CEiCk~~y 72 (238)
..+.|-||.+...+.. ..+..+|. +.+=.+|+.+|...+. ...||+|+..-
T Consensus 160 ~~k~CGICme~i~ek~~~~~rfgilpnC~-----H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s 220 (344)
T KOG1039|consen 160 SEKECGICMETINEKAASERRFGILPNCN-----HSFCLNCIRKWRQATQFESKTSKSCPFCRVPS 220 (344)
T ss_pred ccccceehhhhccccchhhhhcccCCCcc-----hhhhhcHhHhhhhhhccccccccCCCcccCcc
Confidence 5789999998765432 11224465 7788899999996655 68999999443
No 60
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=80.25 E-value=1.6 Score=47.20 Aligned_cols=53 Identities=23% Similarity=0.488 Sum_probs=36.7
Q ss_pred CCCeeeEeccCc-ccCCCccccccc-cCCccccccHHHHHHHHHhcCCcccccccCccc
Q 026480 17 TTSHCRICHEEE-FESCNSLEAPCA-CSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (238)
Q Consensus 17 ~~~~CRIC~ee~-~e~~~~Li~PC~-C~GSlk~vH~~CL~~Wl~~k~~~~CEiCk~~y~ 73 (238)
+...|+||-++- -..++.+.--|+ |. --|=+.|.+- =...|+..|+.||++|+
T Consensus 16 ~~qiCqICGD~vg~~~~Ge~FVAC~eC~---FPVCrpCYEY-Er~eG~q~CPqCktrYk 70 (1079)
T PLN02638 16 GGQVCQICGDNVGKTVDGEPFVACDVCA---FPVCRPCYEY-ERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred CCceeeecccccCcCCCCCEEEEeccCC---Cccccchhhh-hhhcCCccCCccCCchh
Confidence 456999998763 223344556676 54 3388899843 33458999999999997
No 61
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=79.46 E-value=0.91 Score=44.47 Aligned_cols=49 Identities=27% Similarity=0.544 Sum_probs=37.8
Q ss_pred CCCeeeEeccCcccCCCcc-ccccccCCccccccHHHHHHHHHhcCCcccccccC
Q 026480 17 TTSHCRICHEEEFESCNSL-EAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQ 70 (238)
Q Consensus 17 ~~~~CRIC~ee~~e~~~~L-i~PC~C~GSlk~vH~~CL~~Wl~~k~~~~CEiCk~ 70 (238)
.+-.|-.|-+.....++.+ -.||+ |.+|..|++..+..++.++||-|++
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALpCs-----HIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALPCS-----HIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccchh-----HHHHHHHHHHHHHhCCCCCCccHHH
Confidence 3456888866543322334 68998 9999999999999999999999993
No 62
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=79.04 E-value=1.9 Score=41.38 Aligned_cols=34 Identities=21% Similarity=0.759 Sum_probs=28.0
Q ss_pred cccccCCccccccHHHHHHHHHhc-----------CCcccccccCccc
Q 026480 37 APCACSGTVKFAHRDCIQRWCYEK-----------GNTTCEICLQEYG 73 (238)
Q Consensus 37 ~PC~C~GSlk~vH~~CL~~Wl~~k-----------~~~~CEiCk~~y~ 73 (238)
.+|.|+ -.-=.+|+-||+.++ ++..||.|++.|=
T Consensus 307 ~~C~CR---PmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FC 351 (358)
T PF10272_consen 307 QQCYCR---PMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFC 351 (358)
T ss_pred cccccc---chHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccce
Confidence 478887 566789999999875 4689999999884
No 63
>PLN02195 cellulose synthase A
Probab=79.00 E-value=1.8 Score=46.40 Aligned_cols=53 Identities=25% Similarity=0.511 Sum_probs=36.6
Q ss_pred CCCeeeEeccCcc-cCCCccccccc-cCCccccccHHHHHHHHHhcCCcccccccCccc
Q 026480 17 TTSHCRICHEEEF-ESCNSLEAPCA-CSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (238)
Q Consensus 17 ~~~~CRIC~ee~~-e~~~~Li~PC~-C~GSlk~vH~~CL~~Wl~~k~~~~CEiCk~~y~ 73 (238)
+...|+||-++-. +.++.+.--|+ |. --|=+.|.+ .=...|+..|+.||++|+
T Consensus 5 ~~~~c~~cgd~~~~~~~g~~fvaC~eC~---~pvCrpCye-yer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 5 GAPICATCGEEVGVDSNGEAFVACHECS---YPLCKACLE-YEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred CCccceecccccCcCCCCCeEEEeccCC---Cccccchhh-hhhhcCCccCCccCCccc
Confidence 4568999987532 22334556676 54 448889983 333458999999999998
No 64
>PLN02400 cellulose synthase
Probab=78.06 E-value=2.5 Score=45.80 Aligned_cols=53 Identities=21% Similarity=0.543 Sum_probs=35.9
Q ss_pred CCCeeeEeccCc-ccCCCccccccc-cCCccccccHHHHHHHHHhcCCcccccccCccc
Q 026480 17 TTSHCRICHEEE-FESCNSLEAPCA-CSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (238)
Q Consensus 17 ~~~~CRIC~ee~-~e~~~~Li~PC~-C~GSlk~vH~~CL~~Wl~~k~~~~CEiCk~~y~ 73 (238)
+...|+||-++- -..++.+..-|+ |. --|=+.|.+- =...|+..|+.||++|+
T Consensus 35 ~gqiCqICGD~VG~t~dGe~FVAC~eCa---FPVCRpCYEY-ERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 35 NGQICQICGDDVGVTETGDVFVACNECA---FPVCRPCYEY-ERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred CCceeeecccccCcCCCCCEEEEEccCC---Cccccchhhe-ecccCCccCcccCCccc
Confidence 456999998763 222344556676 54 3377888732 23348899999999997
No 65
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=76.54 E-value=0.81 Score=44.83 Aligned_cols=27 Identities=15% Similarity=0.111 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 026480 167 ALVTVLLLRACGIILPMYVLMRTITAI 193 (238)
Q Consensus 167 t~l~v~~lr~~G~llp~Yi~~~~~~~l 193 (238)
..+.+++++++++++=+-+.++++...
T Consensus 352 ~~~l~vVlgvavlivVv~viv~vc~~~ 378 (439)
T PF02480_consen 352 AALLGVVLGVAVLIVVVGVIVWVCLRC 378 (439)
T ss_dssp ---------------------------
T ss_pred cchHHHHHHHHHHHHHHHHHhheeeee
Confidence 344444555555555555555554433
No 66
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=75.81 E-value=0.96 Score=43.59 Aligned_cols=47 Identities=21% Similarity=0.432 Sum_probs=37.0
Q ss_pred CCCeeeEeccCcccCCCccccccccCCccccccHHHHHHHHHhcCCcccccccCccc
Q 026480 17 TTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (238)
Q Consensus 17 ~~~~CRIC~ee~~e~~~~Li~PC~C~GSlk~vH~~CL~~Wl~~k~~~~CEiCk~~y~ 73 (238)
..-.|-||++=.. -++++||. |-+-.-|+...++. ...||.|...+.
T Consensus 22 ~lLRC~IC~eyf~---ip~itpCs-----HtfCSlCIR~~L~~--~p~CP~C~~~~~ 68 (442)
T KOG0287|consen 22 DLLRCGICFEYFN---IPMITPCS-----HTFCSLCIRKFLSY--KPQCPTCCVTVT 68 (442)
T ss_pred HHHHHhHHHHHhc---Cceecccc-----chHHHHHHHHHhcc--CCCCCceecccc
Confidence 3457999987653 36999977 77888999999965 568999997764
No 67
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=74.80 E-value=2.1 Score=37.69 Aligned_cols=48 Identities=23% Similarity=0.531 Sum_probs=35.3
Q ss_pred CCCeeeEeccCcccCCCccccccccCCccccccHHHHHHHHHhcCCcccccccCcc
Q 026480 17 TTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEY 72 (238)
Q Consensus 17 ~~~~CRIC~ee~~e~~~~Li~PC~C~GSlk~vH~~CL~~Wl~~k~~~~CEiCk~~y 72 (238)
...-|-||++...+.. +.-+-|. |.+=..|++.-+ +.+.+||+|++..
T Consensus 130 ~~~~CPiCl~~~sek~-~vsTkCG-----HvFC~~Cik~al--k~~~~CP~C~kkI 177 (187)
T KOG0320|consen 130 GTYKCPICLDSVSEKV-PVSTKCG-----HVFCSQCIKDAL--KNTNKCPTCRKKI 177 (187)
T ss_pred cccCCCceecchhhcc-ccccccc-----hhHHHHHHHHHH--HhCCCCCCccccc
Confidence 4478999999876531 2234444 889999999988 4578999999643
No 68
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=74.61 E-value=0.84 Score=48.08 Aligned_cols=26 Identities=23% Similarity=0.683 Sum_probs=22.8
Q ss_pred ccccHHHHHHHHHhcCCcccccccCccc
Q 026480 46 KFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (238)
Q Consensus 46 k~vH~~CL~~Wl~~k~~~~CEiCk~~y~ 73 (238)
+|+|..|+..|.+. -.+|++|+..|.
T Consensus 146 H~FC~~Ci~sWsR~--aqTCPiDR~EF~ 171 (1134)
T KOG0825|consen 146 HYFCEECVGSWSRC--AQTCPVDRGEFG 171 (1134)
T ss_pred cccHHHHhhhhhhh--cccCchhhhhhh
Confidence 79999999999965 459999999984
No 69
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=71.64 E-value=3.6 Score=46.60 Aligned_cols=59 Identities=22% Similarity=0.478 Sum_probs=41.0
Q ss_pred cCCCCCCCCCeeeEeccCcccCCCccccccccCCccccccHHHHHHHHHhc--------CCcccccccCccc
Q 026480 10 DFKSNPETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEK--------GNTTCEICLQEYG 73 (238)
Q Consensus 10 d~~~~s~~~~~CRIC~ee~~e~~~~Li~PC~C~GSlk~vH~~CL~~Wl~~k--------~~~~CEiCk~~y~ 73 (238)
....+.+..+.|-||+.+--. ..||---|--+.+|..|..+-+..+ +-..||||+.+.+
T Consensus 3478 ks~tkQD~DDmCmICFTE~L~-----AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3478 KSATKQDADDMCMICFTEALS-----AAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred hhhhhcccCceEEEEehhhhC-----CCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence 334466788999999987532 2455322222999999997766543 4589999998765
No 70
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=69.84 E-value=4.5 Score=43.78 Aligned_cols=56 Identities=21% Similarity=0.520 Sum_probs=38.7
Q ss_pred CCCCCCeeeEeccCcc-cCCCccccccc-cCCccccccHHHHHHHHHhcCCcccccccCccc
Q 026480 14 NPETTSHCRICHEEEF-ESCNSLEAPCA-CSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (238)
Q Consensus 14 ~s~~~~~CRIC~ee~~-e~~~~Li~PC~-C~GSlk~vH~~CL~~Wl~~k~~~~CEiCk~~y~ 73 (238)
.+-+...|.||-++-. +.++.+.--|+ |. --|=+.|.+ .=...|+..|+.||++|+
T Consensus 11 ~~~~~~~c~iCGd~vg~~~~Ge~FVAC~eC~---fpvCr~cye-ye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 11 QSADAKTCRVCGDEVGVKEDGQPFVACHVCG---FPVCKPCYE-YERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred cCCCcchhhccccccCcCCCCCEEEEeccCC---Cccccchhh-hhhhcCCccCCccCCchh
Confidence 4447789999987632 22344556676 54 348889983 334458899999999997
No 71
>KOG1834 consensus Calsyntenin [Extracellular structures]
Probab=67.74 E-value=1.1 Score=46.54 Aligned_cols=18 Identities=33% Similarity=0.554 Sum_probs=11.9
Q ss_pred HHHHHHHHhhhhHHHHHH
Q 026480 169 VTVLLLRACGIILPMYVL 186 (238)
Q Consensus 169 l~v~~lr~~G~llp~Yi~ 186 (238)
-||+++--+|||++|.|+
T Consensus 829 atvViVVcVgfLv~mvvl 846 (952)
T KOG1834|consen 829 ATVVIVVCVGFLVFMVVL 846 (952)
T ss_pred eEEEEEeehhHHHHHHHH
Confidence 445556667777777665
No 72
>COG4420 Predicted membrane protein [Function unknown]
Probab=67.11 E-value=21 Score=31.75 Aligned_cols=45 Identities=36% Similarity=0.587 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHhC---CCCCchHHHHHHHHHHHhhhhHHHHHH
Q 026480 142 LTFTVLLLVKHLFAVLTG---NTDDYPFALVTVLLLRACGIILPMYVL 186 (238)
Q Consensus 142 li~~~lLllrh~~~~~~~---g~~~~~ft~l~v~~lr~~G~llp~Yi~ 186 (238)
+.+.++||++-.+.+... --++|||.+|.+++--.|.|--|+-.|
T Consensus 62 l~~~~~ll~Wi~lNl~~~~~~~wDpyPFi~LnLllS~~AaiqAp~Ilm 109 (191)
T COG4420 62 LTFTLLLLLWIVLNLFLVPGLAWDPYPFILLNLLLSTLAAIQAPLILM 109 (191)
T ss_pred HHHHHHHHHHHHHHHhhhcCCcCCCccHHHHHHHHHHHHHHHHhHHHH
Confidence 567777888888886543 248999999999887777777776433
No 73
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=64.58 E-value=4.1 Score=27.43 Aligned_cols=23 Identities=26% Similarity=0.720 Sum_probs=16.0
Q ss_pred ccccHHHHHHHHHhcCCcccccc
Q 026480 46 KFAHRDCIQRWCYEKGNTTCEIC 68 (238)
Q Consensus 46 k~vH~~CL~~Wl~~k~~~~CEiC 68 (238)
.-+|..|++++++.+.+.+||.|
T Consensus 21 ~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 21 VRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -EE-HHHHHHHTTT-SS-B-TTT
T ss_pred chHHHHHHHHHHhcCCCCCCcCC
Confidence 34999999999998877789987
No 74
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=64.36 E-value=6.7 Score=41.75 Aligned_cols=55 Identities=20% Similarity=0.507 Sum_probs=40.1
Q ss_pred CCCCCeeeEeccCcccCCCccccccccCCccccccHHHHHHHHHhc-----CCcccccccCccc
Q 026480 15 PETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEK-----GNTTCEICLQEYG 73 (238)
Q Consensus 15 s~~~~~CRIC~ee~~e~~~~Li~PC~C~GSlk~vH~~CL~~Wl~~k-----~~~~CEiCk~~y~ 73 (238)
+....+|-||.+.-......| +|+.=.+.+|..|+++|-.++ +.+.|+-|...+.
T Consensus 188 ~~~~yeCmIC~e~I~~t~~~W----SC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~~ 247 (950)
T KOG1952|consen 188 SNRKYECMICTERIKRTAPVW----SCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVSK 247 (950)
T ss_pred hcCceEEEEeeeeccccCCce----ecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchhc
Confidence 356689999998865544334 233333889999999999764 3699999997765
No 75
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.50 E-value=4.4 Score=38.48 Aligned_cols=32 Identities=22% Similarity=0.742 Sum_probs=25.3
Q ss_pred cccCCccccccHHHHHHHHHhc-----------CCcccccccCccc
Q 026480 39 CACSGTVKFAHRDCIQRWCYEK-----------GNTTCEICLQEYG 73 (238)
Q Consensus 39 C~C~GSlk~vH~~CL~~Wl~~k-----------~~~~CEiCk~~y~ 73 (238)
|-|+ ..--++||.+|+..+ |+-+||.|++.|-
T Consensus 323 c~cr---p~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fc 365 (381)
T KOG3899|consen 323 CICR---PLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFC 365 (381)
T ss_pred cccc---cHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceE
Confidence 3466 567789999999653 5789999999884
No 76
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=63.24 E-value=2.5 Score=31.94 Aligned_cols=34 Identities=26% Similarity=0.619 Sum_probs=24.5
Q ss_pred CCCCeeeEeccCcccCCCccccccccCCccccccHHHHHH
Q 026480 16 ETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQR 55 (238)
Q Consensus 16 ~~~~~CRIC~ee~~e~~~~Li~PC~C~GSlk~vH~~CL~~ 55 (238)
+....|.+|...-..+ .-.+-||+ +.+|..|++|
T Consensus 76 ~~~~~C~vC~k~l~~~-~f~~~p~~-----~v~H~~C~~r 109 (109)
T PF10367_consen 76 TESTKCSVCGKPLGNS-VFVVFPCG-----HVVHYSCIKR 109 (109)
T ss_pred CCCCCccCcCCcCCCc-eEEEeCCC-----eEEecccccC
Confidence 3456799998876542 23477876 7999999764
No 77
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=63.17 E-value=3.2 Score=44.71 Aligned_cols=9 Identities=22% Similarity=0.235 Sum_probs=6.3
Q ss_pred CcccccccC
Q 026480 62 NTTCEICLQ 70 (238)
Q Consensus 62 ~~~CEiCk~ 70 (238)
..+|..|.+
T Consensus 1213 vqT~~~l~t 1221 (1516)
T KOG1832|consen 1213 VQTCSPLQT 1221 (1516)
T ss_pred cccCcHHHH
Confidence 467777776
No 78
>PF02084 Bindin: Bindin; InterPro: IPR000775 Bindin, the major protein component of the acrosome granule of sea urchin sperm, mediates species-specific adhesion of sperm to the egg surface during fertilisation [, ]. The protein coats the acrosomal process after externalisation by the acrosome reaction; it binds to sulphated, fucose-containing polysaccharides on the vitelline-layer receptor proteoglycans that cover the egg plasma membrane. Bindins from different genera show high levels of sequence similarity in both the mature bindin domain and in the probindin precursor region. The most highly conserved region is a 42-residue segment in the central portion of the mature bindin protein. This domain may be responsible for conserved functions of bindin, while the more highly divergent flanking regions may be responsible for its species-specific properties [].; GO: 0007342 fusion of sperm to egg plasma membrane
Probab=62.48 E-value=1.5 Score=39.89 Aligned_cols=19 Identities=37% Similarity=0.408 Sum_probs=14.7
Q ss_pred cccCCCCCcchhhcccCCC
Q 026480 206 YDDETSNSDEEEEEEEDDD 224 (238)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~ 224 (238)
.+.+|.||++|||||+|-.
T Consensus 154 eqVLsAMqEeeeEEe~DAa 172 (238)
T PF02084_consen 154 EQVLSAMQEEEEEEEQDAA 172 (238)
T ss_pred HHHHHHHhhhHHHHHHHHh
Confidence 3567899998888888754
No 79
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=58.53 E-value=7.5 Score=37.73 Aligned_cols=61 Identities=20% Similarity=0.433 Sum_probs=43.1
Q ss_pred EEeecCCCCCCCCCeeeEeccCcccCCCccccccccCCccccccHHHHHHHHHhc--CCcccccccCccc
Q 026480 6 LFVEDFKSNPETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEK--GNTTCEICLQEYG 73 (238)
Q Consensus 6 l~~~d~~~~s~~~~~CRIC~ee~~e~~~~Li~PC~C~GSlk~vH~~CL~~Wl~~k--~~~~CEiCk~~y~ 73 (238)
+.+|...++.++.+.|..|.++-+-++ .-..||.|. .-+-+-| |-.-+ -+-.|+-|+..|.
T Consensus 2 m~~qei~~sedeed~cplcie~mditd-knf~pc~cg---y~ic~fc---~~~irq~lngrcpacrr~y~ 64 (480)
T COG5175 2 MNVQEIHNSEDEEDYCPLCIEPMDITD-KNFFPCPCG---YQICQFC---YNNIRQNLNGRCPACRRKYD 64 (480)
T ss_pred cchhhccccccccccCccccccccccc-CCcccCCcc---cHHHHHH---HHHHHhhccCCChHhhhhcc
Confidence 346777777778889999998865433 457899996 3355555 54333 4679999999884
No 80
>PRK12766 50S ribosomal protein L32e; Provisional
Probab=58.29 E-value=3.6 Score=37.41 Aligned_cols=18 Identities=44% Similarity=0.745 Sum_probs=11.7
Q ss_pred ccCCCCCCccccCCCCCC
Q 026480 220 EEDDDDDDEEEQLDPRHS 237 (238)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~ 237 (238)
++|+||+|-+..|||+|.
T Consensus 76 ~~~~~~~~~~~~~~~~~~ 93 (232)
T PRK12766 76 EEEEEDADVETELRPRGL 93 (232)
T ss_pred hhhhhhhhhhhhcccccc
Confidence 334444445788999986
No 81
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=57.25 E-value=5.4 Score=43.08 Aligned_cols=12 Identities=17% Similarity=0.343 Sum_probs=7.0
Q ss_pred cCCCccccCCCC
Q 026480 121 SHYPQCSSAAGR 132 (238)
Q Consensus 121 ~~y~~~s~~~~~ 132 (238)
+.-+.|+++|.+
T Consensus 1300 P~Ldqc~VtFNs 1311 (1516)
T KOG1832|consen 1300 PSLDQCAVTFNS 1311 (1516)
T ss_pred ccccceEEEecc
Confidence 345667766643
No 82
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=56.26 E-value=14 Score=31.95 Aligned_cols=38 Identities=21% Similarity=0.639 Sum_probs=25.2
Q ss_pred CCeeeEeccCcccCCCcccc-------ccc---cCCccccccHHHHHHHHHhc
Q 026480 18 TSHCRICHEEEFESCNSLEA-------PCA---CSGTVKFAHRDCIQRWCYEK 60 (238)
Q Consensus 18 ~~~CRIC~ee~~e~~~~Li~-------PC~---C~GSlk~vH~~CL~~Wl~~k 60 (238)
...|-||++-.-. .... -|. |.. .|-|..||.|..+..
T Consensus 2 d~~CpICme~PHN---AVLLlCSS~~kgcRpymc~T--s~rhSNCLdqfkka~ 49 (162)
T PF07800_consen 2 DVTCPICMEHPHN---AVLLLCSSHEKGCRPYMCDT--SYRHSNCLDQFKKAY 49 (162)
T ss_pred CccCceeccCCCc---eEEEEeccccCCccccccCC--ccchhHHHHHHHHHh
Confidence 4689999886432 1222 232 543 588999999999763
No 83
>PF05795 Plasmodium_Vir: Plasmodium vivax Vir protein; InterPro: IPR008780 This family consists of several Vir proteins specific to the genus Plasmodium and Plasmodium vivax in particular. The vir genes are present at about 600-1,000 copies per haploid genome and encode proteins that are immunovariant in natural infections, indicating that they may have a functional role in establishing chronic infection through antigenic variation [].
Probab=55.71 E-value=10 Score=34.14 Aligned_cols=33 Identities=21% Similarity=0.302 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhh
Q 026480 165 PFALVTVLLLRACGIILPMYVLMRTITAIHNSI 197 (238)
Q Consensus 165 ~ft~l~v~~lr~~G~llp~Yi~~~~~~~lq~r~ 197 (238)
+|+..++.++.++|+.+++|++-|...-+-+++
T Consensus 280 ~~~~~v~~~~~~~G~~~~~f~LYK~g~~~~~~~ 312 (354)
T PF05795_consen 280 PFSTSVSPVLSVLGIPLIFFLLYKFGSWFNRRR 312 (354)
T ss_pred ccccchhhhhhhHHHHHHHHHHhccchhhcccc
Confidence 343333567888999999999999333333333
No 84
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=55.51 E-value=10 Score=38.15 Aligned_cols=49 Identities=22% Similarity=0.504 Sum_probs=37.0
Q ss_pred CCeeeEeccCcccCCCccccccccCCccccccHHHHHHHHHhc---CCcccccccCcccC
Q 026480 18 TSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEK---GNTTCEICLQEYGP 74 (238)
Q Consensus 18 ~~~CRIC~ee~~e~~~~Li~PC~C~GSlk~vH~~CL~~Wl~~k---~~~~CEiCk~~y~~ 74 (238)
...|.||+++..- +..+-|. |.+=-.||-+.++.+ +-..|+||...+.+
T Consensus 186 ~~~CPICL~~~~~---p~~t~CG-----HiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPSV---PVRTNCG-----HIFCGPCILQYWNYSAIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCCc---ccccccC-----ceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence 5789999998643 3444466 888899998877654 56899999977654
No 85
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=55.49 E-value=12 Score=36.46 Aligned_cols=64 Identities=20% Similarity=0.312 Sum_probs=43.7
Q ss_pred eEEeecCCCCCCCCCeeeEeccCcccCCCccccccccCCccccccHHHHHHHHHhcCCcccccccCcccCCc
Q 026480 5 VLFVEDFKSNPETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGPGY 76 (238)
Q Consensus 5 ~l~~~d~~~~s~~~~~CRIC~ee~~e~~~~Li~PC~C~GSlk~vH~~CL~~Wl~~k~~~~CEiCk~~y~~~y 76 (238)
+|..-+-.+..++...|-||-....-+ -..||+ +-.-..|--+...-..+..|.+|+.....++
T Consensus 48 nlttsSaddtDEen~~C~ICA~~~TYs---~~~PC~-----H~~CH~Ca~RlRALY~~K~C~~CrTE~e~V~ 111 (493)
T COG5236 48 NLTTSSADDTDEENMNCQICAGSTTYS---ARYPCG-----HQICHACAVRLRALYMQKGCPLCRTETEAVV 111 (493)
T ss_pred ccccccccccccccceeEEecCCceEE---EeccCC-----chHHHHHHHHHHHHHhccCCCccccccceEE
Confidence 444445555667788999998775332 478998 4444456666666667789999999876544
No 86
>PTZ00415 transmission-blocking target antigen s230; Provisional
Probab=55.26 E-value=6.4 Score=45.10 Aligned_cols=6 Identities=17% Similarity=0.124 Sum_probs=3.3
Q ss_pred hhhhhh
Q 026480 195 NSIRRE 200 (238)
Q Consensus 195 ~r~~r~ 200 (238)
+||.||
T Consensus 134 ~~~~r~ 139 (2849)
T PTZ00415 134 RRRARH 139 (2849)
T ss_pred hHHhhc
Confidence 555554
No 87
>PF01528 Herpes_glycop: Herpesvirus glycoprotein M; InterPro: IPR000785 The Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) protein belongs to a family of sequences that groups together Human herpesvirus 1 (HHV-1) UL10, EHV-1 52, Human herpesvirus 3 (HHV-3) 50, Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4) BBRF3, Human herpesvirus 1 (HHV-1) 39 and Human cytomegalovirus (HHV-5) UL100. Little is yet known about the properties of the protein. However, its amino acid sequence is highly hydrophobic, containing 8 putative membrane-spanning regions, and it is therefore believed to be either membrane-associated or transmembrane.; GO: 0016020 membrane
Probab=54.58 E-value=20 Score=34.73 Aligned_cols=27 Identities=26% Similarity=0.345 Sum_probs=18.6
Q ss_pred HHHhhhhHHHHHHHHHHHHHHhhhhhh
Q 026480 174 LRACGIILPMYVLMRTITAIHNSIRRE 200 (238)
Q Consensus 174 lr~~G~llp~Yi~~~~~~~lq~r~~r~ 200 (238)
|...-++--..+++|.++...++|+|+
T Consensus 309 la~i~~i~l~~~vvR~vR~~~~hr~~~ 335 (374)
T PF01528_consen 309 LAVIAIICLIMMVVRLVRAFLYHRRRS 335 (374)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 444445555677899999988876643
No 88
>PF05009 EBV-NA3: Epstein-Barr virus nuclear antigen 3 (EBNA-3); InterPro: IPR007706 This family contains EBNA-3A, -3B, and -3C which are latent infection nuclear proteins important for Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4)-induced B-cell immortalisation and the immune response to EBVG infection. ; GO: 0016032 viral reproduction, 0042025 host cell nucleus; PDB: 3SJV_H 3DXA_M.
Probab=53.32 E-value=4.4 Score=37.26 Aligned_cols=30 Identities=33% Similarity=0.557 Sum_probs=0.0
Q ss_pred ccCCCCCcchhhcccCCCCCC-ccccCCCCC
Q 026480 207 DDETSNSDEEEEEEEDDDDDD-EEEQLDPRH 236 (238)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 236 (238)
++-+.+.++|||+.|.|.||| |-|+.+|+-
T Consensus 212 ~~a~~Et~sE~eD~e~e~dde~elP~ivp~~ 242 (255)
T PF05009_consen 212 DDAIVETSSESEDSESESDDEAELPYIVPRM 242 (255)
T ss_dssp -------------------------------
T ss_pred CCCcccccccchhhccccCcccCCceecCCC
Confidence 566677788888888888888 889999874
No 89
>PHA03283 envelope glycoprotein E; Provisional
Probab=53.26 E-value=14 Score=37.34 Aligned_cols=34 Identities=15% Similarity=0.310 Sum_probs=18.2
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHhhhhhhhcccc
Q 026480 171 VLLLRACGIILPMYVLMRTITAIHNSIRREYHHVT 205 (238)
Q Consensus 171 v~~lr~~G~llp~Yi~~~~~~~lq~r~~r~~~~~~ 205 (238)
++++-++| ++-.-+.+|++....++++|-|++..
T Consensus 404 ~~~~~~~~-~~~~~l~vw~c~~~r~~~~~~y~iln 437 (542)
T PHA03283 404 LAIICTCA-ALLVALVVWGCILYRRSNRKPYEVLN 437 (542)
T ss_pred HHHHHHHH-HHHHHHhhhheeeehhhcCCcccccC
Confidence 33444444 33344455555555566677777654
No 90
>PF13153 DUF3985: Protein of unknown function (DUF3985)
Probab=51.92 E-value=40 Score=22.98 Aligned_cols=24 Identities=25% Similarity=0.542 Sum_probs=18.6
Q ss_pred chHHHHHHHHHHHhhhhHHHHHHH
Q 026480 164 YPFALVTVLLLRACGIILPMYVLM 187 (238)
Q Consensus 164 ~~ft~l~v~~lr~~G~llp~Yi~~ 187 (238)
|-|.+.+.+++|...+++-++.++
T Consensus 14 yv~~kvayvalkilai~lii~~iv 37 (44)
T PF13153_consen 14 YVFFKVAYVALKILAILLIIFLIV 37 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566778888999998888776554
No 91
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=51.71 E-value=11 Score=27.11 Aligned_cols=46 Identities=15% Similarity=0.387 Sum_probs=32.6
Q ss_pred CCCeeeEeccCcccCCCccccccccCCccccccHHHHHHHHHhcCCcccccccCcccC
Q 026480 17 TTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGP 74 (238)
Q Consensus 17 ~~~~CRIC~ee~~e~~~~Li~PC~C~GSlk~vH~~CL~~Wl~~k~~~~CEiCk~~y~~ 74 (238)
....|-.|-..... ..+.||. ++|=+.|..-| +..-|++|+.+|.+
T Consensus 6 ~~~~~~~~~~~~~~---~~~~pCg-----H~I~~~~f~~~----rYngCPfC~~~~~~ 51 (55)
T PF14447_consen 6 PEQPCVFCGFVGTK---GTVLPCG-----HLICDNCFPGE----RYNGCPFCGTPFEF 51 (55)
T ss_pred cceeEEEccccccc---ccccccc-----ceeeccccChh----hccCCCCCCCcccC
Confidence 34567777655433 4789998 78877775443 45689999999875
No 92
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=48.82 E-value=11 Score=39.57 Aligned_cols=58 Identities=28% Similarity=0.488 Sum_probs=37.8
Q ss_pred CCCeeeEeccCcccCCCc--cccccccCCccccccHHHHHHH---HHhc-----CCcccccccCcccC
Q 026480 17 TTSHCRICHEEEFESCNS--LEAPCACSGTVKFAHRDCIQRW---CYEK-----GNTTCEICLQEYGP 74 (238)
Q Consensus 17 ~~~~CRIC~ee~~e~~~~--Li~PC~C~GSlk~vH~~CL~~W---l~~k-----~~~~CEiCk~~y~~ 74 (238)
..+.|.||.|+..++... --.-|+=.|=-+-+|..|-|+- +.+. +-..|-.|++-|..
T Consensus 116 fnKtCYIC~E~GrpnkA~~GACMtCNKs~CkqaFHVTCAQ~~GLLCEE~gn~~dNVKYCGYCk~HfsK 183 (900)
T KOG0956|consen 116 FNKTCYICNEEGRPNKAAKGACMTCNKSGCKQAFHVTCAQRAGLLCEEEGNISDNVKYCGYCKYHFSK 183 (900)
T ss_pred hcceeeeecccCCccccccccceecccccchhhhhhhHhhhhccceeccccccccceechhHHHHHHH
Confidence 457899999886654211 1344552333388999998864 3332 34889999998853
No 93
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=48.53 E-value=91 Score=25.30 Aligned_cols=6 Identities=33% Similarity=0.733 Sum_probs=2.3
Q ss_pred HHHHHH
Q 026480 142 LTFTVL 147 (238)
Q Consensus 142 li~~~l 147 (238)
++|.++
T Consensus 41 i~fg~l 46 (136)
T PF08507_consen 41 ILFGLL 46 (136)
T ss_pred HHHHHH
Confidence 334333
No 94
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=45.86 E-value=11 Score=30.49 Aligned_cols=37 Identities=11% Similarity=0.301 Sum_probs=22.5
Q ss_pred CchHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhhhcc
Q 026480 163 DYPFALVTVLLLRACGIILPMYVLMRTITAIHNSIRREYHH 203 (238)
Q Consensus 163 ~~~ft~l~v~~lr~~G~llp~Yi~~~~~~~lq~r~~r~~~~ 203 (238)
+|+.|+.++|+.-++...|-..|+-+. ||+.+ ||.+.
T Consensus 10 dyal~K~~~FA~L~i~~FiILLIi~~~---IW~~~-r~~r~ 46 (121)
T PF10669_consen 10 DYALTKIMFFAFLFIVVFIILLIITKS---IWHDS-RQVRI 46 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhhH-HHHHH
Confidence 677788777776655554444444444 78765 55533
No 95
>PF08595 RXT2_N: RXT2-like, N-terminal; InterPro: IPR013904 The entry represents the N-terminal region of RXT2-like proteins. In Saccharomyces cerevisiae (Baker's yeast), RXT2 has been demonstrated to be involved in conjugation with cellular fusion (mating) and invasive growth []. A high throughput localisation study has localised RXT2 to the nucleus [].
Probab=45.40 E-value=11 Score=32.04 Aligned_cols=19 Identities=26% Similarity=0.664 Sum_probs=9.2
Q ss_pred hcccCCCCCCccccCCCCC
Q 026480 218 EEEEDDDDDDEEEQLDPRH 236 (238)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~ 236 (238)
+|++|+|++++..+.||..
T Consensus 68 dde~~~d~~~~~~d~nP~~ 86 (149)
T PF08595_consen 68 DDESDEDADEDAADENPYK 86 (149)
T ss_pred ccccchhhhhhhhccCchh
Confidence 3333344444445567753
No 96
>PRK11246 hypothetical protein; Provisional
Probab=43.93 E-value=28 Score=31.50 Aligned_cols=12 Identities=50% Similarity=0.689 Sum_probs=6.8
Q ss_pred HHHHHHHhhhhH
Q 026480 170 TVLLLRACGIIL 181 (238)
Q Consensus 170 ~v~~lr~~G~ll 181 (238)
++++-.++|+||
T Consensus 168 Mll~al~iG~lL 179 (218)
T PRK11246 168 MLLLALAIGIVL 179 (218)
T ss_pred HHHHHHHHHHHH
Confidence 344556666665
No 97
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=42.43 E-value=13 Score=34.66 Aligned_cols=43 Identities=33% Similarity=0.691 Sum_probs=31.6
Q ss_pred eeEeccCcccCC-CccccccccCCccccccHHHHHHHHHhcCCcccccccC
Q 026480 21 CRICHEEEFESC-NSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQ 70 (238)
Q Consensus 21 CRIC~ee~~e~~-~~Li~PC~C~GSlk~vH~~CL~~Wl~~k~~~~CEiCk~ 70 (238)
|-||.+....+. .+-..||. ++.|..|++.-+... .+||+|+.
T Consensus 161 cPic~e~l~~s~~~~~~~~Cg-----H~~h~~cf~e~~~~~--y~CP~C~~ 204 (276)
T KOG1940|consen 161 CPICKEYLFLSFEDAGVLKCG-----HYMHSRCFEEMICEG--YTCPICSK 204 (276)
T ss_pred CchhHHHhccccccCCccCcc-----cchHHHHHHHHhccC--CCCCcccc
Confidence 788877654432 23467777 999998888877654 99999997
No 98
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=42.05 E-value=97 Score=29.18 Aligned_cols=32 Identities=19% Similarity=0.272 Sum_probs=14.2
Q ss_pred CCchH-HHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 026480 162 DDYPF-ALVTVLLLRACGIILPMYVLMRTITAI 193 (238)
Q Consensus 162 ~~~~f-t~l~v~~lr~~G~llp~Yi~~~~~~~l 193 (238)
..|.+ |-|+++++-++.+++-+|+..|.+..+
T Consensus 33 ~~~~ie~sl~~~~~~~~~~~~~~~~~~~~~~~~ 65 (398)
T PRK10747 33 DNYNIETSVTGLAIILILAMVVLFAIEWLLRRI 65 (398)
T ss_pred CCEEEEehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44554 344444444444444444444544433
No 99
>PF04532 DUF587: Protein of unknown function (DUF587); InterPro: IPR007618 This domain is found at the N-termini of some human herpesvirus U58 proteins, and some cytomegalovirus UL87 proteins. This region is always found N-terminal to the UL87 (IPR004285 from INTERPRO), which has no known function.
Probab=41.32 E-value=7.8 Score=34.74 Aligned_cols=29 Identities=28% Similarity=0.634 Sum_probs=21.5
Q ss_pred eccCcccCCCcc-ccccccCCccccccHHH
Q 026480 24 CHEEEFESCNSL-EAPCACSGTVKFAHRDC 52 (238)
Q Consensus 24 C~ee~~e~~~~L-i~PC~C~GSlk~vH~~C 52 (238)
|..++.+.++-| ..|+.|.|.+-|||+++
T Consensus 93 CyCdeWd~~eyl~~~~~~C~GP~LYVhr~r 122 (215)
T PF04532_consen 93 CYCDEWDTNEYLAECAYFCRGPLLYVHRKR 122 (215)
T ss_pred eeecceehhhHHhhCCcccCCceEEEEccc
Confidence 666665544334 78999999999999943
No 100
>PF14018 DUF4234: Domain of unknown function (DUF4234)
Probab=41.23 E-value=1.4e+02 Score=21.62 Aligned_cols=37 Identities=16% Similarity=0.040 Sum_probs=23.1
Q ss_pred CchHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhh
Q 026480 163 DYPFALVTVLLLRACGIILPMYVLMRTITAIHNSIRR 199 (238)
Q Consensus 163 ~~~ft~l~v~~lr~~G~llp~Yi~~~~~~~lq~r~~r 199 (238)
..+++.+.+++.-.+.+++++|-.-|.-..+++--+|
T Consensus 38 ~~~~~~~~lll~ilt~gi~~i~w~~k~~~~i~~~~~~ 74 (75)
T PF14018_consen 38 SPRSMTLWLLLSILTCGIYSIYWAYKLGNRINEEARA 74 (75)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344434444455577788888888887777665544
No 101
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=41.05 E-value=72 Score=30.03 Aligned_cols=21 Identities=14% Similarity=-0.042 Sum_probs=9.5
Q ss_pred hhhhHHHHHHHHHHHHHHhhh
Q 026480 177 CGIILPMYVLMRTITAIHNSI 197 (238)
Q Consensus 177 ~G~llp~Yi~~~~~~~lq~r~ 197 (238)
..+.+-.|-.++=+-.+++||
T Consensus 237 ~~~~~l~~~l~~Rwl~v~~RR 257 (340)
T PF12794_consen 237 LLGWLLVYQLILRWLLVARRR 257 (340)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444455554
No 102
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=40.10 E-value=11 Score=24.50 Aligned_cols=17 Identities=24% Similarity=0.598 Sum_probs=13.0
Q ss_pred cccccccCcccCCccCC
Q 026480 63 TTCEICLQEYGPGYTAP 79 (238)
Q Consensus 63 ~~CEiCk~~y~~~yt~P 79 (238)
+.|+-|+..|...+.+|
T Consensus 2 r~C~~Cg~~Yh~~~~pP 18 (36)
T PF05191_consen 2 RICPKCGRIYHIEFNPP 18 (36)
T ss_dssp EEETTTTEEEETTTB--
T ss_pred cCcCCCCCccccccCCC
Confidence 47999999999877644
No 103
>PF15539 CAF1-p150_C2: CAF1 complex subunit p150, region binding to CAF1-p60 at C-term
Probab=39.47 E-value=21 Score=33.46 Aligned_cols=33 Identities=33% Similarity=0.314 Sum_probs=16.8
Q ss_pred HHHHHHhhhhhhh-cccccccCCCCCcchhhcccC
Q 026480 189 TITAIHNSIRREY-HHVTYDDETSNSDEEEEEEED 222 (238)
Q Consensus 189 ~~~~lq~r~~r~~-~~~~~~~~~~~~~~~~~~~~~ 222 (238)
+|+++-+|+ |+- .+...+++.+--+-||+|+||
T Consensus 214 ~it~fmkk~-~~~~q~~~~d~dgfqadtee~eeed 247 (292)
T PF15539_consen 214 CITKFMKKR-RHDEQVGAGDMDGFQADTEEDEEED 247 (292)
T ss_pred cHHHHHHhc-CcccccccccCcccccCcccccccC
Confidence 355666665 443 344455665554544444443
No 104
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=39.34 E-value=28 Score=31.08 Aligned_cols=28 Identities=21% Similarity=0.446 Sum_probs=21.2
Q ss_pred ccccHHHHHHHHHhc---C------CcccccccCccc
Q 026480 46 KFAHRDCIQRWCYEK---G------NTTCEICLQEYG 73 (238)
Q Consensus 46 k~vH~~CL~~Wl~~k---~------~~~CEiCk~~y~ 73 (238)
|-+|+-||-.|++.- . --.|+.|..+..
T Consensus 192 kpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pia 228 (234)
T KOG3268|consen 192 KPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIA 228 (234)
T ss_pred CcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcce
Confidence 889999999999642 1 247888886654
No 105
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=39.32 E-value=12 Score=33.27 Aligned_cols=39 Identities=33% Similarity=0.651 Sum_probs=24.8
Q ss_pred CeeeEeccCcccCCCccccccccCCcccccc-HHHHHHHHHhcCCcccccccCc
Q 026480 19 SHCRICHEEEFESCNSLEAPCACSGTVKFAH-RDCIQRWCYEKGNTTCEICLQE 71 (238)
Q Consensus 19 ~~CRIC~ee~~e~~~~Li~PC~C~GSlk~vH-~~CL~~Wl~~k~~~~CEiCk~~ 71 (238)
..||.|.+.+. ..+..||+ |+.| ..| ..+ ..+||+|+..
T Consensus 159 ~~Cr~C~~~~~---~VlllPCr-----Hl~lC~~C-----~~~-~~~CPiC~~~ 198 (207)
T KOG1100|consen 159 RSCRKCGEREA---TVLLLPCR-----HLCLCGIC-----DES-LRICPICRSP 198 (207)
T ss_pred ccceecCcCCc---eEEeeccc-----ceEecccc-----ccc-CccCCCCcCh
Confidence 44999987753 36899998 4432 122 122 6679999843
No 106
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=39.28 E-value=38 Score=31.63 Aligned_cols=48 Identities=21% Similarity=0.494 Sum_probs=36.9
Q ss_pred CCCeeeEeccCcccCCCccccccccCCccccccHHHHHH-HHHhcCCcccccccCccc
Q 026480 17 TTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQR-WCYEKGNTTCEICLQEYG 73 (238)
Q Consensus 17 ~~~~CRIC~ee~~e~~~~Li~PC~C~GSlk~vH~~CL~~-Wl~~k~~~~CEiCk~~y~ 73 (238)
....|-||++..+. +.-+||. |.+--.||.. |... ....|++|++.-.
T Consensus 214 ~d~kC~lC~e~~~~---ps~t~Cg-----HlFC~~Cl~~~~t~~-k~~~CplCRak~~ 262 (271)
T COG5574 214 ADYKCFLCLEEPEV---PSCTPCG-----HLFCLSCLLISWTKK-KYEFCPLCRAKVY 262 (271)
T ss_pred cccceeeeecccCC---ccccccc-----chhhHHHHHHHHHhh-ccccCchhhhhcc
Confidence 34569999988643 5688988 8999999999 8864 3457999996543
No 107
>PHA03281 envelope glycoprotein E; Provisional
Probab=38.81 E-value=35 Score=35.00 Aligned_cols=11 Identities=45% Similarity=0.770 Sum_probs=4.6
Q ss_pred ccCCCCCCccc
Q 026480 220 EEDDDDDDEEE 230 (238)
Q Consensus 220 ~~~~~~~~~~~ 230 (238)
.|||+.+|-+|
T Consensus 608 ~ed~~~~~~~~ 618 (642)
T PHA03281 608 FEDDEETDTDE 618 (642)
T ss_pred cccccccchhh
Confidence 34444444333
No 108
>PF12420 DUF3671: Protein of unknown function ; InterPro: IPR022139 This domain family is found in eukaryotes, and is typically between 96 and 116 amino acids in length.
Probab=38.39 E-value=1.2e+02 Score=24.17 Aligned_cols=49 Identities=10% Similarity=0.295 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCchH---HHHHHHHHHHhhhhHHHHHHHHHH
Q 026480 142 LTFTVLLLVKHLFAVLTGNTDDYPF---ALVTVLLLRACGIILPMYVLMRTI 190 (238)
Q Consensus 142 li~~~lLllrh~~~~~~~g~~~~~f---t~l~v~~lr~~G~llp~Yi~~~~~ 190 (238)
+.+.++.|+.--++.+.+..+.+.. .....+.+-++++++.+||++|.+
T Consensus 50 il~~l~~l~g~I~~il~~~~~~~~~~~~~~~f~~i~~~i~ll~iiYi~~Kvi 101 (104)
T PF12420_consen 50 ILPFLVPLIGLIFPILFSACVKIKIPDTNYIFFIIFITIILLVIIYIFIKVI 101 (104)
T ss_pred HHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHhhc
Confidence 3444444555555555442222221 333445678889999999999874
No 109
>KOG3130 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.22 E-value=15 Score=36.39 Aligned_cols=20 Identities=10% Similarity=0.044 Sum_probs=11.1
Q ss_pred HHHHhhhhHHHHHHHHHHHH
Q 026480 173 LLRACGIILPMYVLMRTITA 192 (238)
Q Consensus 173 ~lr~~G~llp~Yi~~~~~~~ 192 (238)
++.++-.+.|+..-.-..+.
T Consensus 233 ~~k~td~~~~~l~~~~~~tp 252 (514)
T KOG3130|consen 233 MHKVTDSHTPCLKDVASSTP 252 (514)
T ss_pred hhhhhcccchHhhcCCCcCc
Confidence 35666677776554444443
No 110
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=37.40 E-value=24 Score=30.20 Aligned_cols=8 Identities=25% Similarity=0.106 Sum_probs=3.4
Q ss_pred HHhhhhhh
Q 026480 193 IHNSIRRE 200 (238)
Q Consensus 193 lq~r~~r~ 200 (238)
+|+-|.|.
T Consensus 13 ~w~yr~rp 20 (156)
T PF08372_consen 13 LWNYRFRP 20 (156)
T ss_pred HhccccCC
Confidence 44444343
No 111
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=37.09 E-value=1.9e+02 Score=25.74 Aligned_cols=41 Identities=12% Similarity=0.237 Sum_probs=19.2
Q ss_pred CCCchH-HHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhhh
Q 026480 161 TDDYPF-ALVTVLLLRACGIILPMYVLMRTITAIHNSIRREY 201 (238)
Q Consensus 161 ~~~~~f-t~l~v~~lr~~G~llp~Yi~~~~~~~lq~r~~r~~ 201 (238)
.+...+ ....+..+.+.+.++.+-.++.++..+.+.++++.
T Consensus 36 ~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~k~~~ 77 (248)
T PF11368_consen 36 LDNISFSTFFNIPWISFIALLIIIILFLLTFYFIYKSRKYKK 77 (248)
T ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444 33333444445544444445555554545444443
No 112
>PHA02834 chemokine receptor-like protein; Provisional
Probab=36.69 E-value=73 Score=28.94 Aligned_cols=29 Identities=17% Similarity=0.456 Sum_probs=23.7
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHhhhhhh
Q 026480 172 LLLRACGIILPMYVLMRTITAIHNSIRRE 200 (238)
Q Consensus 172 ~~lr~~G~llp~Yi~~~~~~~lq~r~~r~ 200 (238)
+.+-+.++++|+-+|+-+|..|.++.+++
T Consensus 191 ~~~~i~~f~iPl~ii~~~Y~~I~~~l~~~ 219 (323)
T PHA02834 191 FEINIFGIVIPLIILIYCYSKILYTLKNC 219 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33457889999999999999998887654
No 113
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=36.28 E-value=2e+02 Score=26.03 Aligned_cols=21 Identities=14% Similarity=0.474 Sum_probs=16.8
Q ss_pred hhhhHHHHHHHHHHHHHHhhh
Q 026480 177 CGIILPMYVLMRTITAIHNSI 197 (238)
Q Consensus 177 ~G~llp~Yi~~~~~~~lq~r~ 197 (238)
+||.|+++++++-+..+-++.
T Consensus 103 sGf~LFL~lvI~R~~~ll~~l 123 (216)
T KOG1962|consen 103 SGFVLFLSLVIRRLHTLLREL 123 (216)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 899999999988776665544
No 114
>PHA03234 DNA packaging protein UL33; Provisional
Probab=36.18 E-value=63 Score=29.99 Aligned_cols=27 Identities=7% Similarity=0.048 Sum_probs=21.3
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHhhhhh
Q 026480 173 LLRACGIILPMYVLMRTITAIHNSIRR 199 (238)
Q Consensus 173 ~lr~~G~llp~Yi~~~~~~~lq~r~~r 199 (238)
++-+.|+++|+-||+-+|..|-+..+|
T Consensus 200 ~~~~~~f~iPl~im~~cY~~I~~~L~~ 226 (338)
T PHA03234 200 VFCFIWGIFPTMIFSFFYVIFCKALHA 226 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344568899999999999988776644
No 115
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=35.80 E-value=24 Score=25.78 Aligned_cols=47 Identities=21% Similarity=0.367 Sum_probs=27.6
Q ss_pred CCeeeEeccCcccCCCccccccccCCccccccHHHH-HHHHHhcCCcccccccCccc
Q 026480 18 TSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCI-QRWCYEKGNTTCEICLQEYG 73 (238)
Q Consensus 18 ~~~CRIC~ee~~e~~~~Li~PC~C~GSlk~vH~~CL-~~Wl~~k~~~~CEiCk~~y~ 73 (238)
..+|-||.+..-++ .+--|.=. -.-..|- ..|-. ..-+||||+.+.+
T Consensus 7 ~dECTICye~pvds---VlYtCGHM----CmCy~Cg~rl~~~--~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 7 SDECTICYEHPVDS---VLYTCGHM----CMCYACGLRLKKA--LHGCCPICRAPIK 54 (62)
T ss_pred ccceeeeccCcchH---HHHHcchH----HhHHHHHHHHHHc--cCCcCcchhhHHH
Confidence 37999999876553 34444300 0112443 34443 5669999997654
No 116
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=35.15 E-value=12 Score=34.43 Aligned_cols=40 Identities=25% Similarity=0.471 Sum_probs=26.8
Q ss_pred CCCccccccccCCc-cccccHHHHHHHHHhcCCcccccccCc
Q 026480 31 SCNSLEAPCACSGT-VKFAHRDCIQRWCYEKGNTTCEICLQE 71 (238)
Q Consensus 31 ~~~~Li~PC~C~GS-lk~vH~~CL~~Wl~~k~~~~CEiCk~~ 71 (238)
+.+.|+ -|.|.+= +.|+|..|+--=..-+|++.|+-|+..
T Consensus 228 syg~Mi-~CDn~~C~~eWFH~~CVGL~~~PkgkWyC~~C~~~ 268 (274)
T KOG1973|consen 228 SYGKMI-GCDNPGCPIEWFHFTCVGLKTKPKGKWYCPRCKAE 268 (274)
T ss_pred cccccc-ccCCCCCCcceEEEeccccccCCCCcccchhhhhh
Confidence 344455 3665443 489999997544445688999999843
No 117
>PF11431 Transport_MerF: Membrane transport protein MerF; InterPro: IPR021091 This entry represents Mercury ion transport protein MerF, which has a core helix-loop-helix domain. It also has two vicinal pairs of cysteine residues which are involved in the transport of Hg(II) across the membrane and are exposed to the cytoplasm []. ; PDB: 1WAZ_A 2LJ2_A 2H3O_A.
Probab=34.46 E-value=1.1e+02 Score=21.40 Aligned_cols=12 Identities=33% Similarity=0.440 Sum_probs=6.2
Q ss_pred HHHHHHhhhhhh
Q 026480 189 TITAIHNSIRRE 200 (238)
Q Consensus 189 ~~~~lq~r~~r~ 200 (238)
.+++++|++++|
T Consensus 35 t~yal~r~~~~~ 46 (46)
T PF11431_consen 35 TIYALWRRRRKQ 46 (46)
T ss_dssp HHHHHHHHHHS-
T ss_pred HHHHHHHHhccC
Confidence 444577766443
No 118
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=34.24 E-value=2e+02 Score=26.50 Aligned_cols=14 Identities=36% Similarity=0.508 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHH
Q 026480 140 LALTFTVLLLVKHL 153 (238)
Q Consensus 140 ~ali~~~lLllrh~ 153 (238)
++++++++++++..
T Consensus 244 ~~~~~~~~~~~~~~ 257 (325)
T PRK10714 244 GGFSLAVLLVVLRL 257 (325)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444455454444
No 119
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=33.99 E-value=59 Score=30.17 Aligned_cols=65 Identities=22% Similarity=0.284 Sum_probs=38.1
Q ss_pred cccCCCCchhhHHHHHHHHHHHHHHHHHHHH-HhCCCCCchHHHHHHHHHHHhhhhHHHHHHHHHH
Q 026480 126 CSSAAGRTAACCRSLALTFTVLLLVKHLFAV-LTGNTDDYPFALVTVLLLRACGIILPMYVLMRTI 190 (238)
Q Consensus 126 ~s~~~~~~a~~Cr~~ali~~~lLllrh~~~~-~~~g~~~~~ft~l~v~~lr~~G~llp~Yi~~~~~ 190 (238)
|---+..|..+.|.-+++|.+|-++=-++.+ ++-|+-.++.+.--++++=+..+|+-++.+.|++
T Consensus 183 CrKvSSVG~~faRkR~i~f~llgllfliiaigltvGT~~~A~~~~giY~~wv~~~l~a~~~~~rs~ 248 (256)
T PF09788_consen 183 CRKVSSVGPRFARKRAIIFFLLGLLFLIIAIGLTVGTWTYAKTYGGIYVSWVGLFLIALICLIRSI 248 (256)
T ss_pred CceeccccchHhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcCcEeHHHHHHHHHHHHHHHHhh
Confidence 4444555667888888887777655555554 4456665555433344444444556666666664
No 120
>PHA03375 hypothetical protein; Provisional
Probab=33.66 E-value=13 Score=39.01 Aligned_cols=29 Identities=28% Similarity=0.729 Sum_probs=22.0
Q ss_pred eccCcccCCCcc-ccccccCCccccccHHH
Q 026480 24 CHEEEFESCNSL-EAPCACSGTVKFAHRDC 52 (238)
Q Consensus 24 C~ee~~e~~~~L-i~PC~C~GSlk~vH~~C 52 (238)
|++++.+.++-| ..+|.|.|.+-|||+++
T Consensus 99 CycdeWd~~eyl~~~~~~C~gP~LYvhr~r 128 (844)
T PHA03375 99 CYCDEWDVNEYLAKTACNCRGPLLYIHRSR 128 (844)
T ss_pred ccccchhhhhhhhhcccccCCceEEEEecc
Confidence 676666544334 79999999999999943
No 121
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=33.57 E-value=36 Score=32.45 Aligned_cols=51 Identities=18% Similarity=0.313 Sum_probs=32.2
Q ss_pred CCCeeeEeccCcccCCCccccccccCCccccccHHHHHHHHHhcCCcccccccCcccCCc
Q 026480 17 TTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGPGY 76 (238)
Q Consensus 17 ~~~~CRIC~ee~~e~~~~Li~PC~C~GSlk~vH~~CL~~Wl~~k~~~~CEiCk~~y~~~y 76 (238)
..++|-||+.... .|...||. |-+=.-|++-=.. .+...|.+|++++.-.+
T Consensus 6 ~~~eC~IC~nt~n---~Pv~l~C~-----HkFCyiCiKGsy~-ndk~~CavCR~pids~i 56 (324)
T KOG0824|consen 6 KKKECLICYNTGN---CPVNLYCF-----HKFCYICIKGSYK-NDKKTCAVCRFPIDSTI 56 (324)
T ss_pred cCCcceeeeccCC---cCcccccc-----chhhhhhhcchhh-cCCCCCceecCCCCcch
Confidence 4579999998753 24566665 4455555532221 25678999999885433
No 122
>PRK11463 fxsA phage T7 F exclusion suppressor FxsA; Reviewed
Probab=32.86 E-value=1.7e+02 Score=24.61 Aligned_cols=42 Identities=19% Similarity=0.312 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhhhhHH
Q 026480 141 ALTFTVLLLVKHLFAVLTGNTDDYPFALVTVLLLRACGIILP 182 (238)
Q Consensus 141 ali~~~lLllrh~~~~~~~g~~~~~ft~l~v~~lr~~G~llp 182 (238)
.++|.++.++.-++-+...+..-.-.|++.+++.-+.|+.+-
T Consensus 5 ~~~~~~~~~iEi~~~i~v~~~iG~~~tl~lvi~t~~lG~~l~ 46 (148)
T PRK11463 5 LLLFLLYPLIEIAVFIAVASVIGVGWTLLLVILTSVLGVLLA 46 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 345555655555444333322222225555555555555443
No 123
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=32.81 E-value=15 Score=35.93 Aligned_cols=23 Identities=48% Similarity=0.718 Sum_probs=5.8
Q ss_pred hhhcccCCCCCCccc--cCCCCCCC
Q 026480 216 EEEEEEDDDDDDEEE--QLDPRHSV 238 (238)
Q Consensus 216 ~~~~~~~~~~~~~~~--~~~~~~~~ 238 (238)
+++|+.|.|++|+++ +|+.+|++
T Consensus 225 ~~~e~~dsd~~ee~~~iel~~~hPL 249 (404)
T PF12753_consen 225 EIEEGLDSDDEEEEEEIELSENHPL 249 (404)
T ss_dssp ---------------T--TTTTTTH
T ss_pred cccccccccccccccceeeCCCCCc
Confidence 344444444444444 89999974
No 124
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional
Probab=32.22 E-value=1.7e+02 Score=26.20 Aligned_cols=33 Identities=15% Similarity=0.360 Sum_probs=24.5
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhh
Q 026480 168 LVTVLLLRACGIILPMYVLMRTITAIHNSIRRE 200 (238)
Q Consensus 168 ~l~v~~lr~~G~llp~Yi~~~~~~~lq~r~~r~ 200 (238)
.+..+.+...++++|+-+++-.+..+.++.+++
T Consensus 201 ~~~~~~~~~~~~~lP~~ii~~~y~~i~~~l~~~ 233 (335)
T PHA03087 201 LFINFEINIIGMLIPLTILLYCYSKILITLKGI 233 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344455677889999999999998887766543
No 125
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=30.67 E-value=19 Score=27.83 Aligned_cols=15 Identities=27% Similarity=0.264 Sum_probs=6.5
Q ss_pred HhhhhHHHHHHHHHH
Q 026480 176 ACGIILPMYVLMRTI 190 (238)
Q Consensus 176 ~~G~llp~Yi~~~~~ 190 (238)
+.++++-+-|++|.+
T Consensus 11 aliv~~iiaIvvW~i 25 (81)
T PF00558_consen 11 ALIVALIIAIVVWTI 25 (81)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333334455554
No 126
>PF03606 DcuC: C4-dicarboxylate anaerobic carrier; InterPro: IPR018385 Escherichia coli contains four different secondary carriers (DcuA, DcuB, DcuC, and DctA) for C4-dicarboxylates [, , , ] DcuA is used for aerobic growth on C4-dicarboxylates [, ], whereas the Dcu carriers (encoded by the dcuA, dcuB, and dcuC genes) are used under anaerobic conditions and form a distinct family of carriers [, , , , , ]. Each of the Dcu carriers is able to catalyze the uptake, antiport, and possibly also efflux of C4-dicarboxylates. DcuB is the major C4-dicarboxylate carrier for fumarate respiration with high fumarate-succinate exchange activity. It is synthesized only in the absence of oxygen and nitrate and in the presence of C4-dicarboxylates [, , , ]. DcuA is expressed constitutively in aerobic and anaerobic growth and can substitute for DcuB [, ]. These proteins are members of the C4-dicarboxylate Uptake C (DcuC) family. DcuC has 12 GES predicted transmembrane regions, is induced only under anaerobic conditions, and is not repressed by glucose. DcuC may therefore function as a succinate efflux system during anaerobic glucose fermentation. However, when overexpressed, it can replace either DcuA or DcuB in catalyzing fumarate-succinate exchange and fumarate uptake [, ]. DcuC shows the same transport modes as DcuA and DcuB (exchange, uptake, and presumably efflux of C4-dicarboxylates) [].; GO: 0016021 integral to membrane
Probab=30.50 E-value=92 Score=30.51 Aligned_cols=23 Identities=4% Similarity=0.150 Sum_probs=10.9
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHH
Q 026480 172 LLLRACGIILPMYVLMRTITAIH 194 (238)
Q Consensus 172 ~~lr~~G~llp~Yi~~~~~~~lq 194 (238)
+..|..-+.++..+.+.......
T Consensus 197 ~~~r~i~~~i~~~i~~~~~~~ya 219 (465)
T PF03606_consen 197 FWFRQIPFVIFTLIAIAYVHRYA 219 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555444444333333
No 127
>COG4846 CcdC Membrane protein involved in cytochrome C biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=30.45 E-value=1.5e+02 Score=25.36 Aligned_cols=55 Identities=16% Similarity=0.314 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhhhhHHHHHHH-HHHHHHHhhh
Q 026480 142 LTFTVLLLVKHLFAVLTGNTDDYPFALVTVLLLRACGIILPMYVLM-RTITAIHNSI 197 (238)
Q Consensus 142 li~~~lLllrh~~~~~~~g~~~~~ft~l~v~~lr~~G~llp~Yi~~-~~~~~lq~r~ 197 (238)
+|++.||++|-....+.+|..++.= +--++.+-+.|.++|-=|.+ -.|..+.+..
T Consensus 98 ~ILigLLiiRi~~K~~is~sid~ge-LsGMF~ilAf~MIvPWRiaMy~~Ykkl~kql 153 (163)
T COG4846 98 VILIGLLIIRIVMKYIISGSIDVGE-LSGMFWILAFGMIVPWRIAMYFSYKKLEKQL 153 (163)
T ss_pred hHHHHHHHHHHHHHHHHcCCccHHH-hhhHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999877653 33455666778888854432 3444455443
No 128
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....
Probab=30.38 E-value=2.1e+02 Score=22.99 Aligned_cols=33 Identities=18% Similarity=0.346 Sum_probs=22.0
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhhh
Q 026480 169 VTVLLLRACGIILPMYVLMRTITAIHNSIRREY 201 (238)
Q Consensus 169 l~v~~lr~~G~llp~Yi~~~~~~~lq~r~~r~~ 201 (238)
......-+.++++|+-++.-++..+.+..+|+.
T Consensus 147 ~~~~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~ 179 (257)
T PF00001_consen 147 IYFIYFFIVFFILPLIIILICYIRILRKLRRQR 179 (257)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccceeeeeeecccccccccccc
Confidence 334456677888888888877776665554444
No 129
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PF10628 CotE: Outer spore coat protein E (CotE); InterPro: IPR018901 CotE is a morphogenic protein that is required for the assembly of the outer coat of the endospore [] and spore resistance to lysozyme []. CotE also regulates the expression of cotA, cotB, cotC and other genes encoding spore outer coat proteins []. The timing of cotE expression has been shown in Bacillus subtilis to affect spore coat morphology but not lysozyme resistance [].
Probab=29.68 E-value=22 Score=31.31 Aligned_cols=16 Identities=38% Similarity=0.569 Sum_probs=11.6
Q ss_pred cCCCCCCccccCCCCC
Q 026480 221 EDDDDDDEEEQLDPRH 236 (238)
Q Consensus 221 ~~~~~~~~~~~~~~~~ 236 (238)
|.+.+|++-|+|||+-
T Consensus 160 d~~~~d~e~e~l~p~~ 175 (182)
T PF10628_consen 160 DFEIEDEEFEDLDPDF 175 (182)
T ss_pred ccccccchhhhcChhh
Confidence 3444578889999974
No 131
>PF01440 Gemini_AL2: Geminivirus AL2 protein; InterPro: IPR000942 Geminiviruses are characterised by a genome of circular single-stranded DNA encapsidated in twinned (geminate) quasi-isometric particles, from which the group derives its name []. Most geminiviruses can be divided into two subgroups on the basis of host range and/or insect vector: i.e. those that infect dicotyledenous plants and are transmitted by the same whitefly species, and those that infect monocotyledenous plants and are transmitted by different leafhopper vectors. The genomes of the whitefly-transmitted African cassava mosaic virus, Tomato golden mosaic virus (TGMV) and Bean golden mosaic virus (BGMV) possess a bipartite genome. By contrast, only a single DNA component has been identified for the leafhopper-transmitted Maize streak virus (MSV) and Wheat dwarf virus (WDV) [, ]. Beet curly top virus (BCTV), and Tobacco yellow dwarf virus belong to a third possible subgroup. Like MSV and WDV, BCTV is transmitted by a specific leafhopper species, yet like the whitefly-transmitted geminiviruses it has a host range confined to dicotyledenous plants. Sequence comparison of the whitefly-transmitted Squash leaf curl virus (SqLCV) and Tomato yellow leaf curl virus (TYLCV) with the genomic components of TGMV and BGMV reveals a close evolutionary relationship [, , ]. Amino acid sequence alignments of Potato yellow mosaic virus (PYMV) proteins with those encoded by other geminiviruses show that PYMV is closely related to geminiviruses isolated from the New World, especially in the putative coat protein gene regions []. Comparison of MSV DNA-encoded proteins with those of other geminiviruses infecting monocotyledonous plants, including Panicum streak virus [] and Miscanthus streak virus (MiSV) [], reveal high levels of similarity.; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=29.60 E-value=8.7 Score=32.26 Aligned_cols=33 Identities=24% Similarity=0.674 Sum_probs=27.8
Q ss_pred ccccccccCCccccccHHHHHHHHHhcCCccccccc
Q 026480 34 SLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICL 69 (238)
Q Consensus 34 ~Li~PC~C~GSlk~vH~~CL~~Wl~~k~~~~CEiCk 69 (238)
.+-.||.|+ .|+|..|-...+..+|+..|---+
T Consensus 32 RIDL~CGCS---yyihinC~~hGFTHRGthhCsS~~ 64 (134)
T PF01440_consen 32 RIDLPCGCS---YYIHINCHNHGFTHRGTHHCSSSR 64 (134)
T ss_pred ccccCCCCE---EEeecccCCCCcCCCcCccCCCcC
Confidence 457899999 899999999999998887776544
No 132
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=29.42 E-value=59 Score=30.69 Aligned_cols=50 Identities=18% Similarity=0.368 Sum_probs=37.6
Q ss_pred CCCCeeeEeccCcccCCCcc-ccccccCCccccccHHHHHHHHHhcCCcccccccCccc
Q 026480 16 ETTSHCRICHEEEFESCNSL-EAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (238)
Q Consensus 16 ~~~~~CRIC~ee~~e~~~~L-i~PC~C~GSlk~vH~~CL~~Wl~~k~~~~CEiCk~~y~ 73 (238)
....+|-+|.+... .|+ +.||. |..=..|+..=+...-..+|+.|+..-.
T Consensus 237 t~~~~C~~Cg~~Pt---iP~~~~~C~-----HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 237 TSDTECPVCGEPPT---IPHVIGKCG-----HIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred cCCceeeccCCCCC---CCeeecccc-----ceeehhhhhhhhcchhhcccCccCCCCc
Confidence 56789999976543 344 67787 7777889887777667789999997654
No 133
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=29.42 E-value=22 Score=19.22 Aligned_cols=10 Identities=30% Similarity=0.929 Sum_probs=6.6
Q ss_pred ccccccCccc
Q 026480 64 TCEICLQEYG 73 (238)
Q Consensus 64 ~CEiCk~~y~ 73 (238)
.|++|+..|.
T Consensus 2 ~C~~C~~~~~ 11 (24)
T PF13894_consen 2 QCPICGKSFR 11 (24)
T ss_dssp E-SSTS-EES
T ss_pred CCcCCCCcCC
Confidence 6999998875
No 134
>PHA03379 EBNA-3A; Provisional
Probab=29.36 E-value=33 Score=36.10 Aligned_cols=29 Identities=34% Similarity=0.540 Sum_probs=23.3
Q ss_pred cCCCCCcchhhcccCCCCCCccccCCCCC
Q 026480 208 DETSNSDEEEEEEEDDDDDDEEEQLDPRH 236 (238)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (238)
+-+-++++|+|+.|.|.||||-+...|+-
T Consensus 344 daigET~sEsEDsEsDsdDEELP~IVPr~ 372 (935)
T PHA03379 344 GATGETREESEDTESDGDDEELPRIVSRE 372 (935)
T ss_pred CCcccccccccccccccccccCccccCCC
Confidence 35677788888888887888999999874
No 135
>PHA03235 DNA packaging protein UL33; Provisional
Probab=29.26 E-value=2.5e+02 Score=27.00 Aligned_cols=28 Identities=18% Similarity=0.161 Sum_probs=22.8
Q ss_pred HHHhhhhHHHHHHHHHHHHHHhhhhhhh
Q 026480 174 LRACGIILPMYVLMRTITAIHNSIRREY 201 (238)
Q Consensus 174 lr~~G~llp~Yi~~~~~~~lq~r~~r~~ 201 (238)
+-+.++++|+-||+.+|..|.+..+|+.
T Consensus 208 l~i~~f~iPl~im~~~Y~~I~~~l~~~~ 235 (409)
T PHA03235 208 LTLVWGIAPVVMMTWFYTFFYRTLKRAS 235 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3456889999999999999988776653
No 136
>KOG1607 consensus Protein transporter of the TRAM (translocating chain-associating membrane) superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.25 E-value=3.5e+02 Score=25.91 Aligned_cols=12 Identities=8% Similarity=-0.130 Sum_probs=5.8
Q ss_pred CCCCchHHHHHH
Q 026480 160 NTDDYPFALVTV 171 (238)
Q Consensus 160 g~~~~~ft~l~v 171 (238)
...++|++.+..
T Consensus 253 ~~~~~~~~~~~~ 264 (318)
T KOG1607|consen 253 QYQPKPSYYFFN 264 (318)
T ss_pred ccCCCchHHHHH
Confidence 345666643333
No 137
>KOG0843 consensus Transcription factor EMX1 and related HOX domain proteins [Transcription]
Probab=29.21 E-value=32 Score=30.58 Aligned_cols=19 Identities=5% Similarity=0.006 Sum_probs=12.7
Q ss_pred HHHHHHHHHhhhhhhhccccc
Q 026480 186 LMRTITAIHNSIRREYHHVTY 206 (238)
Q Consensus 186 ~~~~~~~lq~r~~r~~~~~~~ 206 (238)
++|+| +|+||-+|.+.|..
T Consensus 145 QVkvW--FQNRRtk~kr~~~e 163 (197)
T KOG0843|consen 145 QVKVW--FQNRRTKHKRMQQE 163 (197)
T ss_pred Hhhhh--hhhhhHHHHHHHHH
Confidence 66766 67887676666554
No 138
>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC. These proteins may be transporters. ; GO: 0016021 integral to membrane
Probab=28.25 E-value=2e+02 Score=25.15 Aligned_cols=20 Identities=15% Similarity=0.316 Sum_probs=15.9
Q ss_pred HHHHHHHhhhhHHHHHHHHH
Q 026480 170 TVLLLRACGIILPMYVLMRT 189 (238)
Q Consensus 170 ~v~~lr~~G~llp~Yi~~~~ 189 (238)
++-++|.+|+++-+.+-.++
T Consensus 68 sl~af~IaGGiiL~~ia~~m 87 (203)
T PF01914_consen 68 SLPAFRIAGGIILFLIALEM 87 (203)
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 35579999999988877766
No 139
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=27.37 E-value=70 Score=29.63 Aligned_cols=51 Identities=20% Similarity=0.479 Sum_probs=37.7
Q ss_pred CCCCeeeEeccCcccCCCccccccccCCccccccHHHHHHHHHhc------CCcccccccCcc
Q 026480 16 ETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEK------GNTTCEICLQEY 72 (238)
Q Consensus 16 ~~~~~CRIC~ee~~e~~~~Li~PC~C~GSlk~vH~~CL~~Wl~~k------~~~~CEiCk~~y 72 (238)
+-...||.|.....+++ -...-|. +.+|-+||..|-..- ....|+-|.++.
T Consensus 48 DY~pNC~LC~t~La~gd-t~RLvCy-----hlfHW~ClneraA~lPanTAPaGyqCP~Cs~ei 104 (299)
T KOG3970|consen 48 DYNPNCRLCNTPLASGD-TTRLVCY-----HLFHWKCLNERAANLPANTAPAGYQCPCCSQEI 104 (299)
T ss_pred CCCCCCceeCCccccCc-ceeehhh-----hhHHHHHhhHHHhhCCCcCCCCcccCCCCCCcc
Confidence 45568999977655432 3455665 899999999998652 357999999874
No 140
>KOG1725 consensus Protein involved in membrane traffic (YOP1/TB2/DP1/HVA22 family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.26 E-value=96 Score=27.44 Aligned_cols=33 Identities=24% Similarity=0.362 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhhhhHHHHHHHHH
Q 026480 141 ALTFTVLLLVKHLFAVLTGNTDDYPFALVTVLLLRACGIILPMYVLMRT 189 (238)
Q Consensus 141 ali~~~lLllrh~~~~~~~g~~~~~ft~l~v~~lr~~G~llp~Yi~~~~ 189 (238)
+..+.++|++.+.++++ --++|+++|.|.-+++
T Consensus 45 ~~l~~v~l~~g~~~~l~----------------cn~ig~~yP~y~Sv~a 77 (186)
T KOG1725|consen 45 ILLLAVYLLFGSGGPLL----------------CNLIGFLYPAYASVKA 77 (186)
T ss_pred HHHHHHHHHhcccHHHH----------------HHHHHHHHHHHHHHHh
Confidence 34556666666655543 4567888888887775
No 141
>KOG2568 consensus Predicted membrane protein [Function unknown]
Probab=26.90 E-value=2.3e+02 Score=28.89 Aligned_cols=15 Identities=7% Similarity=0.206 Sum_probs=7.7
Q ss_pred HHHHHHHHHHhhhhh
Q 026480 185 VLMRTITAIHNSIRR 199 (238)
Q Consensus 185 i~~~~~~~lq~r~~r 199 (238)
+++..+..|||--+-
T Consensus 431 ~iLvvI~~LWrPS~n 445 (518)
T KOG2568|consen 431 LILVVIMFLWRPSQN 445 (518)
T ss_pred HHHHHHHHhcCCCCC
Confidence 344455556665433
No 142
>PRK11877 psaI photosystem I reaction center subunit VIII; Reviewed
Probab=26.86 E-value=79 Score=21.24 Aligned_cols=34 Identities=12% Similarity=0.250 Sum_probs=24.7
Q ss_pred CCchHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Q 026480 162 DDYPFALVTVLLLRACGIILPMYVLMRTITAIHN 195 (238)
Q Consensus 162 ~~~~ft~l~v~~lr~~G~llp~Yi~~~~~~~lq~ 195 (238)
.+|+-+.|-.++.=.+|+++|.-.|+-...-||+
T Consensus 3 g~~aas~LPsI~VPlVGlvfPai~Mallf~yIe~ 36 (38)
T PRK11877 3 GDFAASWLPWIFVPLVGWVFPAVFMVLLGRYITA 36 (38)
T ss_pred chHhHHhCchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3455556666678889999999888877766654
No 143
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=26.51 E-value=32 Score=34.41 Aligned_cols=45 Identities=29% Similarity=0.781 Sum_probs=33.3
Q ss_pred CCCCeeeEeccCcccCCCccccccccCCccccccHHHHHHHHHhcCCcccccccCcccC
Q 026480 16 ETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGP 74 (238)
Q Consensus 16 ~~~~~CRIC~ee~~e~~~~Li~PC~C~GSlk~vH~~CL~~Wl~~k~~~~CEiCk~~y~~ 74 (238)
+..+.|+||..+- . .-+.||. |..|+++|...+. .||+|+.....
T Consensus 477 ~~~~~~~~~~~~~-~---~~~~~~~--------~~~~l~~~~~~~~--~~pl~~~~~~~ 521 (543)
T KOG0802|consen 477 EPNDVCAICYQEM-S---ARITPCS--------HALCLRKWLYVQE--VCPLCHTYMKE 521 (543)
T ss_pred cccCcchHHHHHH-H---hcccccc--------chhHHHhhhhhcc--ccCCCchhhhc
Confidence 4558899998765 1 1356666 9999999997654 89999866543
No 144
>PF14812 PBP1_TM: Transmembrane domain of transglycosylase PBP1 at N-terminal; PDB: 3FWL_A 3VMA_A.
Probab=26.23 E-value=22 Score=27.48 Aligned_cols=6 Identities=83% Similarity=1.215 Sum_probs=0.0
Q ss_pred CCcccc
Q 026480 226 DDEEEQ 231 (238)
Q Consensus 226 ~~~~~~ 231 (238)
||||++
T Consensus 46 Ddeeee 51 (81)
T PF14812_consen 46 DDEEEE 51 (81)
T ss_dssp ------
T ss_pred chhhcc
Confidence 334443
No 145
>PF01616 Orbi_NS3: Orbivirus NS3; InterPro: IPR002565 This is a family of Orbivirus non structural protein of unknown function, but which may play a role in release of the virus from infected cells [].
Probab=26.01 E-value=4.6e+02 Score=23.37 Aligned_cols=67 Identities=13% Similarity=0.166 Sum_probs=38.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHh-CCCCC-chHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhh
Q 026480 134 AACCRSLALTFTVLLLVKHLFAVLT-GNTDD-YPFALVTVLLLRACGIILPMYVLMRTITAIHNSIRRE 200 (238)
Q Consensus 134 a~~Cr~~ali~~~lLllrh~~~~~~-~g~~~-~~ft~l~v~~lr~~G~llp~Yi~~~~~~~lq~r~~r~ 200 (238)
-+.|-.++++++++.++-.+.+.+. .+... |--..+-++-|.++|.++++==..+.+..=-+|.+|.
T Consensus 97 ~li~a~v~l~ts~~~~~~~~~~~~~~~l~~~~~~~~~~~~inL~~T~~~~~~~r~~~~l~~~i~r~kke 165 (195)
T PF01616_consen 97 ELIAAIVALLTSVVMAISDMSPELKSNLKEKNWISITLHVINLIATTAMMFCARIERSLQEQIKRLKKE 165 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666543 22222 4347788888999998777644444433333333443
No 146
>PF11874 DUF3394: Domain of unknown function (DUF3394); InterPro: IPR021814 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 190 amino acids in length. This domain is found associated with PF06808 from PFAM.
Probab=25.86 E-value=47 Score=29.22 Aligned_cols=19 Identities=16% Similarity=0.287 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHhhhhhhh
Q 026480 183 MYVLMRTITAIHNSIRREY 201 (238)
Q Consensus 183 ~Yi~~~~~~~lq~r~~r~~ 201 (238)
-.+..-.+..+||||+|+|
T Consensus 165 AlLLL~lv~~lQrRR~~~~ 183 (183)
T PF11874_consen 165 ALLLLGLVAWLQRRRRRKQ 183 (183)
T ss_pred HHHHHHHHHHHhhhhccCC
Confidence 3334444556899987754
No 147
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=25.75 E-value=46 Score=22.88 Aligned_cols=22 Identities=18% Similarity=0.478 Sum_probs=10.9
Q ss_pred HHHHHHHh-cC-CcccccccCccc
Q 026480 52 CIQRWCYE-KG-NTTCEICLQEYG 73 (238)
Q Consensus 52 CL~~Wl~~-k~-~~~CEiCk~~y~ 73 (238)
-+.+++.. ++ ...||+|+.+|.
T Consensus 8 ~~~k~i~~l~~~~~~CPlC~r~l~ 31 (54)
T PF04423_consen 8 ELKKYIEELKEAKGCCPLCGRPLD 31 (54)
T ss_dssp HHHHHHHHHTT-SEE-TTT--EE-
T ss_pred HHHHHHHHHhcCCCcCCCCCCCCC
Confidence 35566643 22 239999998885
No 148
>smart00782 PhnA_Zn_Ribbon PhnA Zinc-Ribbon. This protein family includes an uncharacterised member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterised phosphonoacetate hydrolase designated PhnA.
Probab=25.66 E-value=43 Score=23.17 Aligned_cols=23 Identities=22% Similarity=0.569 Sum_probs=14.2
Q ss_pred cCCcccccccCccc-CCccCCCCC
Q 026480 60 KGNTTCEICLQEYG-PGYTAPSKK 82 (238)
Q Consensus 60 k~~~~CEiCk~~y~-~~yt~P~~~ 82 (238)
+...+||+|+..-+ ..|..||..
T Consensus 5 Rs~~kCELC~a~~~L~vy~Vpp~~ 28 (47)
T smart00782 5 RCESKCELCGSDSPLVVYAVPPSS 28 (47)
T ss_pred HcCCcccCcCCCCCceEEecCCCC
Confidence 44568999997654 334555533
No 149
>COG3216 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.56 E-value=1.2e+02 Score=26.86 Aligned_cols=30 Identities=20% Similarity=0.141 Sum_probs=24.5
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHhhhhhhh
Q 026480 172 LLLRACGIILPMYVLMRTITAIHNSIRREY 201 (238)
Q Consensus 172 ~~lr~~G~llp~Yi~~~~~~~lq~r~~r~~ 201 (238)
+.++++|.++..-+--++++..|.||||+.
T Consensus 147 v~~~a~~~ll~y~~~r~~v~~f~~rR~~~~ 176 (184)
T COG3216 147 VPAGAIGGLLFYGLTRYSVTRFRERRRRSL 176 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457889999988888888998988886654
No 150
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=25.56 E-value=37 Score=35.60 Aligned_cols=48 Identities=17% Similarity=0.531 Sum_probs=36.3
Q ss_pred CCeeeEeccCcccCCCccccccccCCccccccHHHHHHHHHhcCCcccccccCcccC
Q 026480 18 TSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGP 74 (238)
Q Consensus 18 ~~~CRIC~ee~~e~~~~Li~PC~C~GSlk~vH~~CL~~Wl~~k~~~~CEiCk~~y~~ 74 (238)
.-.|..|...-. +..++-|. |.+=..|++.-+..+ .++||.|+..|.+
T Consensus 643 ~LkCs~Cn~R~K---d~vI~kC~-----H~FC~~Cvq~r~etR-qRKCP~Cn~aFga 690 (698)
T KOG0978|consen 643 LLKCSVCNTRWK---DAVITKCG-----HVFCEECVQTRYETR-QRKCPKCNAAFGA 690 (698)
T ss_pred ceeCCCccCchh---hHHHHhcc-----hHHHHHHHHHHHHHh-cCCCCCCCCCCCc
Confidence 357888874432 23677776 889999999988764 5899999999953
No 151
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=25.39 E-value=25 Score=19.50 Aligned_cols=11 Identities=27% Similarity=0.902 Sum_probs=9.0
Q ss_pred ccccccCcccC
Q 026480 64 TCEICLQEYGP 74 (238)
Q Consensus 64 ~CEiCk~~y~~ 74 (238)
.|+.|+..|..
T Consensus 2 ~C~~C~~~f~~ 12 (23)
T PF00096_consen 2 KCPICGKSFSS 12 (23)
T ss_dssp EETTTTEEESS
T ss_pred CCCCCCCccCC
Confidence 69999988863
No 152
>PF07214 DUF1418: Protein of unknown function (DUF1418); InterPro: IPR010815 This family consists of several hypothetical Enterobacterial proteins of around 100 residues in length. Members of this family are often described as YbjC. In Escherichia coli the ybjC gene is located downstream of nfsA (which encodes the major oxygen-insensitive nitroreductase). It is thought that nfsA and ybjC form an operon an its promoter is a class I SoxS-dependent promoter []. The function of this family is unknown.
Probab=25.32 E-value=3.5e+02 Score=21.58 Aligned_cols=21 Identities=19% Similarity=0.208 Sum_probs=10.7
Q ss_pred CCCchH-HHHHHHHHHHhhhhH
Q 026480 161 TDDYPF-ALVTVLLLRACGIIL 181 (238)
Q Consensus 161 ~~~~~f-t~l~v~~lr~~G~ll 181 (238)
....|| +....++.-|+|+++
T Consensus 34 ~LP~~l~~~~aai~MIf~Gi~l 55 (96)
T PF07214_consen 34 SLPAPLSTPTAAIAMIFVGIGL 55 (96)
T ss_pred cCcccccCchHHHHHHHHHHHH
Confidence 344455 444444555566554
No 153
>PF07895 DUF1673: Protein of unknown function (DUF1673); InterPro: IPR012874 This family contains hypothetical proteins of unknown function found in Methanosarcina acetivorans and Methanosarcina mazei.
Probab=25.26 E-value=1.1e+02 Score=26.98 Aligned_cols=49 Identities=16% Similarity=0.295 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhhhhHHHHHHHH
Q 026480 138 RSLALTFTVLLLVKHLFAVLTGNTDDYPFALVTVLLLRACGIILPMYVLMR 188 (238)
Q Consensus 138 r~~ali~~~lLllrh~~~~~~~g~~~~~ft~l~v~~lr~~G~llp~Yi~~~ 188 (238)
|++.+|+.++.|+.-..+ +..|.-.+.+....++.+ ++|+++-|+...-
T Consensus 126 ~~l~~i~~~i~l~~~~~~-~~~~~~~~~~~~~~~~sf-l~g~~~~~wl~y~ 174 (205)
T PF07895_consen 126 RLLLVIILLIILVMFFLY-FILGQIESFISFQSLLSF-LSGLLLLMWLVYF 174 (205)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHH
Confidence 344455555555544444 334443344433333333 5555555554443
No 154
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=25.15 E-value=43 Score=37.97 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=16.1
Q ss_pred cccHHHHHHHHHhcCCccccccc
Q 026480 47 FAHRDCIQRWCYEKGNTTCEICL 69 (238)
Q Consensus 47 ~vH~~CL~~Wl~~k~~~~CEiCk 69 (238)
.+-..|++.|=.-++...|-+=+
T Consensus 1394 ~ALEqcckdaNal~nsircgi~k 1416 (3015)
T KOG0943|consen 1394 LALEQCCKDANALKNSIRCGIIK 1416 (3015)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhh
Confidence 34567777777777777777765
No 155
>PF07301 DUF1453: Protein of unknown function (DUF1453); InterPro: IPR009916 This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown. Members of this family seem to be found exclusively in the Order Bacillales.
Probab=24.72 E-value=2.1e+02 Score=24.35 Aligned_cols=41 Identities=22% Similarity=0.347 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhhhhHH
Q 026480 141 ALTFTVLLLVKHLFAVLTGNTDDYPFALVTVLLLRACGIILP 182 (238)
Q Consensus 141 ali~~~lLllrh~~~~~~~g~~~~~ft~l~v~~lr~~G~llp 182 (238)
.++|..++++|-++....++..+..- .=.++.+=|.|.++|
T Consensus 96 ~~ili~LlviR~~l~~~l~~~i~~~~-~~~mFf~lAfgmIvp 136 (148)
T PF07301_consen 96 IFILIGLLVIRIVLKSYLSGSIDPGQ-LSGMFFLLAFGMIVP 136 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCHHH-HHHHHHHHHHHHHHH
Confidence 36888889999999988887544333 233455556666665
No 156
>KOG4032 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.48 E-value=2.6e+02 Score=24.78 Aligned_cols=30 Identities=23% Similarity=0.278 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhCCCCCchHHHHHHHHHHHh
Q 026480 148 LLVKHLFAVLTGNTDDYPFALVTVLLLRAC 177 (238)
Q Consensus 148 Lllrh~~~~~~~g~~~~~ft~l~v~~lr~~ 177 (238)
+|++-..-.+....++.|...+..++++..
T Consensus 69 ~L~~~l~~EFnt~~eDDS~~~ia~~L~n~f 98 (184)
T KOG4032|consen 69 LLLELLGDEFNTKVEDDSLPEIAQLLLNLF 98 (184)
T ss_pred HHHHHHHHHhhccccCCCHHHHHHHHHHHH
Confidence 444444455555577777777766666543
No 157
>PRK12468 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=24.36 E-value=3.4e+02 Score=26.36 Aligned_cols=61 Identities=10% Similarity=0.032 Sum_probs=32.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhCCCCCchH---HHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Q 026480 135 ACCRSLALTFTVLLLVKHLFAVLTGNTDDYPF---ALVTVLLLRACGIILPMYVLMRTITAIHN 195 (238)
Q Consensus 135 ~~Cr~~ali~~~lLllrh~~~~~~~g~~~~~f---t~l~v~~lr~~G~llp~Yi~~~~~~~lq~ 195 (238)
+..-++.+.+.++++++..++.+..-..--+. ..+.-+++.+...++-+|+++-++-.++.
T Consensus 149 sllKv~li~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~via~~D~~~q 212 (386)
T PRK12468 149 AILKATLVGWVTGLFLWHNWPDMMRLIAAPPVAALGDALHLIIFCGLVVVLGLSPMVGFDVFYQ 212 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677888899999988876432221121 22222334444444444444444443433
No 158
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=24.33 E-value=70 Score=24.75 Aligned_cols=7 Identities=29% Similarity=0.501 Sum_probs=2.6
Q ss_pred ccCCCCC
Q 026480 207 DDETSNS 213 (238)
Q Consensus 207 ~~~~~~~ 213 (238)
+++..+|
T Consensus 51 EDSGnES 57 (81)
T PF00558_consen 51 EDSGNES 57 (81)
T ss_dssp TCCHCTT
T ss_pred ccCCCCC
Confidence 3333333
No 159
>PF04641 Rtf2: Rtf2 RING-finger
Probab=23.93 E-value=74 Score=28.75 Aligned_cols=51 Identities=16% Similarity=0.363 Sum_probs=33.6
Q ss_pred CCCCCeeeEeccCcccCC-CccccccccCCccccccHHHHHHHHHhcCCcccccccCccc
Q 026480 15 PETTSHCRICHEEEFESC-NSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (238)
Q Consensus 15 s~~~~~CRIC~ee~~e~~-~~Li~PC~C~GSlk~vH~~CL~~Wl~~k~~~~CEiCk~~y~ 73 (238)
....-.|.|...+-.... -..+.||.| .+-..+|++-- ....|++|..+|.
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~-----V~s~~alke~k---~~~~Cp~c~~~f~ 161 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGC-----VFSEKALKELK---KSKKCPVCGKPFT 161 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCC-----EeeHHHHHhhc---ccccccccCCccc
Confidence 445566777765542211 124789996 67778877762 4567999999996
No 160
>PRK12721 secretion system apparatus protein SsaU; Reviewed
Probab=23.65 E-value=4.4e+02 Score=25.24 Aligned_cols=62 Identities=11% Similarity=0.185 Sum_probs=32.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhC--C-CCCchHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Q 026480 135 ACCRSLALTFTVLLLVKHLFAVLTG--N-TDDYPFALVTVLLLRACGIILPMYVLMRTITAIHNS 196 (238)
Q Consensus 135 ~~Cr~~ali~~~lLllrh~~~~~~~--g-~~~~~ft~l~v~~lr~~G~llp~Yi~~~~~~~lq~r 196 (238)
+..-++++.+.++++++..++.+.. + ......+.+.-.++...+.++-+++++-++-.+..|
T Consensus 142 sl~Kv~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~via~~D~~~qr 206 (349)
T PRK12721 142 SLLKVVILSLIFAYLLHYYAPSFAYLPYCGAACGLPVVSTLIFWLWGGLLACYLVFGILDYSFQR 206 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666778888888887776532 2 222222333334455555555555555555444443
No 161
>PRK11111 hypothetical protein; Provisional
Probab=23.22 E-value=2.8e+02 Score=24.62 Aligned_cols=21 Identities=24% Similarity=0.341 Sum_probs=17.6
Q ss_pred HHHHHHHHhhhhHHHHHHHHH
Q 026480 169 VTVLLLRACGIILPMYVLMRT 189 (238)
Q Consensus 169 l~v~~lr~~G~llp~Yi~~~~ 189 (238)
.++-++|.+|+++-+.+-+++
T Consensus 73 Isl~afrIaGGiiL~~ial~M 93 (214)
T PRK11111 73 ISIDSFRIAGGILVVTIAMSM 93 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHHH
Confidence 345689999999999888887
No 162
>COG5346 Predicted membrane protein [Function unknown]
Probab=22.80 E-value=1.1e+02 Score=25.74 Aligned_cols=44 Identities=25% Similarity=0.329 Sum_probs=22.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhhhhHHHHHHHHH
Q 026480 134 AACCRSLALTFTVLLLVKHLFAVLTGNTDDYPFALVTVLLLRACGIILPMYVLMRT 189 (238)
Q Consensus 134 a~~Cr~~ali~~~lLllrh~~~~~~~g~~~~~ft~l~v~~lr~~G~llp~Yi~~~~ 189 (238)
+..=|.+.+||-+.|++-- |+-| +.-++++++|.|--.|++.++
T Consensus 87 ~~~tril~liFgi~LVvsi-----------~~~t-la~~~~Gtv~alAlaFv~~~S 130 (136)
T COG5346 87 AKLTRILLLIFGIFLVVSI-----------FPKT-LASLAGGTVFALALAFVIGRS 130 (136)
T ss_pred HHHHHHHHHHHHHHHHHHH-----------HHHH-HHHHccchHHHHHHHHHHhhh
Confidence 4445666677777663321 2222 333455666555555555443
No 163
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=22.27 E-value=4e+02 Score=22.28 Aligned_cols=21 Identities=14% Similarity=0.233 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHhCC
Q 026480 140 LALTFTVLLLVKHLFAVLTGN 160 (238)
Q Consensus 140 ~ali~~~lLllrh~~~~~~~g 160 (238)
+++|+.++|++--.+.++..+
T Consensus 10 ~~iilgilli~~gI~~Lv~~~ 30 (191)
T PF04156_consen 10 ILIILGILLIASGIAALVLFI 30 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555544444443
No 164
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=22.01 E-value=59 Score=22.35 Aligned_cols=35 Identities=17% Similarity=0.435 Sum_probs=15.0
Q ss_pred ccccccccCCccccccHHHH--HHHHHh---cCCcccccccCc
Q 026480 34 SLEAPCACSGTVKFAHRDCI--QRWCYE---KGNTTCEICLQE 71 (238)
Q Consensus 34 ~Li~PC~C~GSlk~vH~~CL--~~Wl~~---k~~~~CEiCk~~ 71 (238)
.+..|++=+ .-.|..|. ..|+.. ++.+.|++|+++
T Consensus 11 ~i~~P~Rg~---~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 11 RIRIPVRGK---NCKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp B-SSEEEET---T--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred EEEeCccCC---cCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 467777633 45677885 456643 467999999863
No 165
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=21.99 E-value=1.2e+02 Score=30.91 Aligned_cols=17 Identities=29% Similarity=0.609 Sum_probs=7.8
Q ss_pred hhcccCCCCCC-ccccCC
Q 026480 217 EEEEEDDDDDD-EEEQLD 233 (238)
Q Consensus 217 ~~~~~~~~~~~-~~~~~~ 233 (238)
+||-+|++|+. +++..|
T Consensus 535 ~nes~d~~d~~~~d~~~d 552 (559)
T KOG1334|consen 535 SNESDDTSDTSAEDDDQD 552 (559)
T ss_pred cccCcccccccccccccc
Confidence 44544444444 344444
No 166
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=21.92 E-value=81 Score=30.23 Aligned_cols=54 Identities=24% Similarity=0.447 Sum_probs=34.7
Q ss_pred CCCCeeeEeccCcccCCCccccccccCCccccccHHHHHHHHHhcCCcccccccCcccCC
Q 026480 16 ETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGPG 75 (238)
Q Consensus 16 ~~~~~CRIC~ee~~e~~~~Li~PC~C~GSlk~vH~~CL~~Wl~~k~~~~CEiCk~~y~~~ 75 (238)
.....|-||.+.... ......||.|. ...+.-|+..=. .+...|+.|+++|..+
T Consensus 247 ~v~~s~p~~~~~~~~-~d~~~lP~~~~---~~~~l~~~~t~~--~~~~~~~~~rk~~~~~ 300 (327)
T KOG2068|consen 247 SVPPSCPICYEDLDL-TDSNFLPCPCG---FRLCLFCHKTIS--DGDGRCPGCRKPYERN 300 (327)
T ss_pred ccCCCCCCCCCcccc-ccccccccccc---ccchhhhhhccc--ccCCCCCccCCccccC
Confidence 355899999886532 23467899987 223333433222 2567999999888643
No 167
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=21.80 E-value=64 Score=31.71 Aligned_cols=47 Identities=23% Similarity=0.488 Sum_probs=34.4
Q ss_pred CCCeeeEeccCcccCCCccccccccCCccccccHHHHHHHHHhcCCcccccccCccc
Q 026480 17 TTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (238)
Q Consensus 17 ~~~~CRIC~ee~~e~~~~Li~PC~C~GSlk~vH~~CL~~Wl~~k~~~~CEiCk~~y~ 73 (238)
+...|-||....- +.+..||+ |-.-..|+.|-+. +...|=.||....
T Consensus 421 Ed~lCpICyA~pi---~Avf~PC~-----H~SC~~CI~qHlm--N~k~CFfCktTv~ 467 (489)
T KOG4692|consen 421 EDNLCPICYAGPI---NAVFAPCS-----HRSCYGCITQHLM--NCKRCFFCKTTVI 467 (489)
T ss_pred ccccCcceecccc---hhhccCCC-----CchHHHHHHHHHh--cCCeeeEecceee
Confidence 5679999998754 35899998 4555678877764 3458999996654
No 168
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=21.68 E-value=2.4e+02 Score=19.59 Aligned_cols=15 Identities=13% Similarity=0.177 Sum_probs=6.7
Q ss_pred hhhhHHHHHHHHHHH
Q 026480 177 CGIILPMYVLMRTIT 191 (238)
Q Consensus 177 ~G~llp~Yi~~~~~~ 191 (238)
+|+++-..+....+.
T Consensus 30 ~G~llg~l~~~~~~~ 44 (68)
T PF06305_consen 30 LGALLGWLLSLPSRL 44 (68)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444433
No 169
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=21.56 E-value=3.2e+02 Score=28.72 Aligned_cols=21 Identities=14% Similarity=0.392 Sum_probs=12.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q 026480 134 AACCRSLALTFTVLLLVKHLFA 155 (238)
Q Consensus 134 a~~Cr~~ali~~~lLllrh~~~ 155 (238)
..+-+ +.++|+++|+++..+.
T Consensus 28 ~~~~~-~~~~w~~~~~~d~~~~ 48 (697)
T PF09726_consen 28 FLYVK-FLLVWALVLLADFMLE 48 (697)
T ss_pred HHHHH-HHHHHHHHHHHHHHhh
Confidence 34444 4457777777666554
No 170
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=21.48 E-value=47 Score=20.18 Aligned_cols=13 Identities=15% Similarity=0.493 Sum_probs=10.1
Q ss_pred CCcccccccCccc
Q 026480 61 GNTTCEICLQEYG 73 (238)
Q Consensus 61 ~~~~CEiCk~~y~ 73 (238)
....|+.|++.|.
T Consensus 13 ~~~~Cp~CG~~F~ 25 (26)
T PF10571_consen 13 SAKFCPHCGYDFE 25 (26)
T ss_pred hcCcCCCCCCCCc
Confidence 3568999998774
No 171
>PF14941 OAF: Transcriptional regulator, Out at first
Probab=21.12 E-value=35 Score=31.22 Aligned_cols=48 Identities=27% Similarity=0.574 Sum_probs=38.8
Q ss_pred cccccccCCccccccHHHHHHHHHhcC----Cccccc--ccCcccCCccCCCCC
Q 026480 35 LEAPCACSGTVKFAHRDCIQRWCYEKG----NTTCEI--CLQEYGPGYTAPSKK 82 (238)
Q Consensus 35 Li~PC~C~GSlk~vH~~CL~~Wl~~k~----~~~CEi--Ck~~y~~~yt~P~~~ 82 (238)
+-.||-|.=++-.-..-|.-++++.++ +.+|-| |++-|.+.|-.|-|.
T Consensus 181 ~w~PC~C~l~lci~WYPCgLKYCkgkd~k~ssYrCGIKTC~Kc~~f~yYV~qKq 234 (240)
T PF14941_consen 181 SWKPCICRLELCIEWYPCGLKYCKGKDQKPSSYRCGIKTCQKCYQFDYYVPQKQ 234 (240)
T ss_pred CCCceeeeecceeeeEccchhhccCCCCCCCccccccccccccccceeecChhh
Confidence 569999999999999999999998875 466766 777788777666554
No 172
>COG2322 Predicted membrane protein [Function unknown]
Probab=21.11 E-value=2.3e+02 Score=25.01 Aligned_cols=54 Identities=35% Similarity=0.482 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHh--CCCCCchH----HHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 026480 140 LALTFTVLLLVKHLFAVLT--GNTDDYPF----ALVTVLLLRACGIILPMYVLMRTITAI 193 (238)
Q Consensus 140 ~ali~~~lLllrh~~~~~~--~g~~~~~f----t~l~v~~lr~~G~llp~Yi~~~~~~~l 193 (238)
++++|.++-|-||-+..-+ .|+..|-+ -+++=..|-++++-|-.|.+.+++...
T Consensus 85 l~l~FlvlYltr~~l~~~t~f~~~G~~k~~Y~~iL~~Hi~LA~i~vPLal~al~~a~~~~ 144 (177)
T COG2322 85 LALVFLVLYLTRHGLGGETAFGGTGIYKGIYFFILITHIILAAINVPLALYALILAWKGL 144 (177)
T ss_pred HHHHHHHHHHHHHhccccccCCCCeeeehHHHHHHHHHHHHHHHhhhHHHHHHHHHhcch
Confidence 5678888888888776554 55555554 333335578888888889998887744
No 173
>PF14283 DUF4366: Domain of unknown function (DUF4366)
Probab=20.87 E-value=25 Score=31.57 Aligned_cols=8 Identities=38% Similarity=1.124 Sum_probs=3.8
Q ss_pred ccccccCc
Q 026480 64 TCEICLQE 71 (238)
Q Consensus 64 ~CEiCk~~ 71 (238)
.|+.|...
T Consensus 128 ~~~v~~~~ 135 (218)
T PF14283_consen 128 ACPVCETE 135 (218)
T ss_pred cccccccc
Confidence 35555433
No 174
>COG5249 RER1 Golgi protein involved in Golgi-to-ER retrieval [Intracellular trafficking and secretion]
Probab=20.75 E-value=3.8e+02 Score=23.31 Aligned_cols=81 Identities=15% Similarity=0.178 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHh-CCCCCchH--HHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhhhcccccccCCCCCcchhhcccC
Q 026480 146 VLLLVKHLFAVLT-GNTDDYPF--ALVTVLLLRACGIILPMYVLMRTITAIHNSIRREYHHVTYDDETSNSDEEEEEEED 222 (238)
Q Consensus 146 ~lLllrh~~~~~~-~g~~~~~f--t~l~v~~lr~~G~llp~Yi~~~~~~~lq~r~~r~~~~~~~~~~~~~~~~~~~~~~~ 222 (238)
+-.|.+|.+.-++ .-..-|.. .+|.++.+|..-- =..|++|-...+..-..-=-. +--+-+-+.+|++++||-|.
T Consensus 18 ~k~LyqhylDr~~P~~~~RW~i~ggL~~lf~iRI~~~-~gwY~icY~LgiyLLn~flaF-LTPKfdms~eq~e~d~eiee 95 (180)
T COG5249 18 LKTLYQHYLDRLAPRPDVRWGITGGLFLLFCIRIWST-GGWYLICYCLGIYLLNAFLAF-LTPKFDMSFEQIEDDDEIEE 95 (180)
T ss_pred HHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHhc-cchhhHHHHHHHHHHHHHHHH-hCCCCcccHhhhcccccccc
Confidence 4456777777554 33455666 4566666664310 124555554443211100001 22244555666655555554
Q ss_pred CCCCCc
Q 026480 223 DDDDDE 228 (238)
Q Consensus 223 ~~~~~~ 228 (238)
-+-|+|
T Consensus 96 g~kd~E 101 (180)
T COG5249 96 GEKDNE 101 (180)
T ss_pred ccccch
Confidence 444443
No 175
>PF14143 YrhC: YrhC-like protein
Probab=20.63 E-value=1.7e+02 Score=22.17 Aligned_cols=15 Identities=13% Similarity=0.352 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHH
Q 026480 141 ALTFTVLLLVKHLFA 155 (238)
Q Consensus 141 ali~~~lLllrh~~~ 155 (238)
.++++++|-+.-.+|
T Consensus 17 LLAvs~FlYiG~viP 31 (72)
T PF14143_consen 17 LLAVSTFLYIGTVIP 31 (72)
T ss_pred HHHHHHHHHHHhhCC
Confidence 345555555544444
No 176
>KOG2548 consensus SWAP mRNA splicing regulator [RNA processing and modification]
Probab=20.42 E-value=58 Score=33.39 Aligned_cols=22 Identities=41% Similarity=0.824 Sum_probs=13.7
Q ss_pred cchhhcccCCCCCCccccCCCC
Q 026480 214 DEEEEEEEDDDDDDEEEQLDPR 235 (238)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~ 235 (238)
+.+.|++|||||.|++..+|-+
T Consensus 184 dgda~sdEdedd~D~Dve~D~~ 205 (653)
T KOG2548|consen 184 DGDAESDEDEDDEDEDVEFDSN 205 (653)
T ss_pred cccccccccccccccccccccc
Confidence 3344566667777777777754
No 177
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=20.03 E-value=33 Score=34.26 Aligned_cols=50 Identities=18% Similarity=0.399 Sum_probs=38.1
Q ss_pred CeeeEeccCcccCCCccccccccCCccccccHHHHHHHHHhc------CCcccccccCc
Q 026480 19 SHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEK------GNTTCEICLQE 71 (238)
Q Consensus 19 ~~CRIC~ee~~e~~~~Li~PC~C~GSlk~vH~~CL~~Wl~~k------~~~~CEiCk~~ 71 (238)
.+|-+|++......|.|+-=|.|. .++|+.|-+--++.. ....|-.|...
T Consensus 169 ~qc~vC~~g~~~~~NrmlqC~~C~---~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~ 224 (464)
T KOG4323|consen 169 LQCSVCYCGGPGAGNRMLQCDKCR---QWYHQACHQPLIKDELAGDPFYEWFCDVCNRG 224 (464)
T ss_pred ceeeeeecCCcCccceeeeecccc---cHHHHHhccCCCCHhhccCccceEeehhhccc
Confidence 459999987665556788878898 899999987766432 36899999843
Done!