BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026481
(238 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IZ3|B Chain B, Cryoem Structure Of Cytoplasmic Polyhedrosis Virus
pdb|3IZ3|C Chain C, Cryoem Structure Of Cytoplasmic Polyhedrosis Virus
pdb|3J17|B Chain B, Structure Of A Transcribing Cypovirus By Cryo-Electron
Microscopy
pdb|3J17|C Chain C, Structure Of A Transcribing Cypovirus By Cryo-Electron
Microscopy
Length = 1333
Score = 32.3 bits (72), Expect = 0.22, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
Query: 131 VFSAAEAVEEFI-GIIMNI-KMEFDDEIGLSGENVKPLSNELSSAIRTVYQRYATYLDAF 188
V + AE E++ G++M + K+ D+ + + GE P+SN LS+ + V + TY +
Sbjct: 237 VTAGAEQSAEYVSGLLMVLFKVMTDNRLVIVGETTTPMSNTLSTVVNNVLR--TTYHNNV 294
Query: 189 GPDESYLR 196
G + + LR
Sbjct: 295 GVNPALLR 302
>pdb|3CNF|A Chain A, 3.88 Angstrom Structure Of Cytoplasmic Polyhedrosis Virus
By Cryo-Electron Microscopy
pdb|3CNF|B Chain B, 3.88 Angstrom Structure Of Cytoplasmic Polyhedrosis Virus
By Cryo-Electron Microscopy
pdb|3IZX|B Chain B, 3.1 Angstrom Cryoem Structure Of Cytoplasmic Polyhedrosis
Virus
pdb|3IZX|C Chain C, 3.1 Angstrom Cryoem Structure Of Cytoplasmic Polyhedrosis
Virus
Length = 1333
Score = 32.3 bits (72), Expect = 0.22, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
Query: 131 VFSAAEAVEEFI-GIIMNI-KMEFDDEIGLSGENVKPLSNELSSAIRTVYQRYATYLDAF 188
V + AE E++ G++M + K+ D+ + + GE P+SN LS+ + V + TY +
Sbjct: 237 VTAGAEQSAEYVSGLLMVLFKVMTDNRLVIVGETTTPMSNTLSTVVNNVLR--TTYHNNV 294
Query: 189 GPDESYLR 196
G + + LR
Sbjct: 295 GVNPALLR 302
>pdb|2YHE|A Chain A, Structure Determination Of The Stereoselective Inverting
Sec-Alkylsulfatase Pisa1 From Pseudomonas Sp.
pdb|2YHE|B Chain B, Structure Determination Of The Stereoselective Inverting
Sec-Alkylsulfatase Pisa1 From Pseudomonas Sp.
pdb|2YHE|C Chain C, Structure Determination Of The Stereoselective Inverting
Sec-Alkylsulfatase Pisa1 From Pseudomonas Sp.
pdb|2YHE|D Chain D, Structure Determination Of The Stereoselective Inverting
Sec-Alkylsulfatase Pisa1 From Pseudomonas Sp.
pdb|2YHE|E Chain E, Structure Determination Of The Stereoselective Inverting
Sec-Alkylsulfatase Pisa1 From Pseudomonas Sp.
pdb|2YHE|F Chain F, Structure Determination Of The Stereoselective Inverting
Sec-Alkylsulfatase Pisa1 From Pseudomonas Sp.
pdb|4AXH|A Chain A, Structure And Mechanism Of The First Inverting
Alkylsulfatase Specific For Secondary Alkylsulfatases
pdb|4AXH|B Chain B, Structure And Mechanism Of The First Inverting
Alkylsulfatase Specific For Secondary Alkylsulfatases
Length = 668
Score = 30.8 bits (68), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 8/53 (15%)
Query: 170 LSSAIRTVYQRYATY-------LDAFGPDESYLRKKVETELGSKMIFLKMRCA 215
LS+ +R VYQRY + LD F P E+ ++ VE G+ + +MR A
Sbjct: 420 LSTNLRAVYQRYLGFYDGNPANLDPFPPVEAG-KRYVEAMGGADAVLKQMRAA 471
>pdb|4AV7|A Chain A, Structure Determination Of The Double Mutant S233y F250g
From The Sec-Alkyl Sulfatase Pisa1
pdb|4AV7|B Chain B, Structure Determination Of The Double Mutant S233y F250g
From The Sec-Alkyl Sulfatase Pisa1
pdb|4AV7|C Chain C, Structure Determination Of The Double Mutant S233y F250g
From The Sec-Alkyl Sulfatase Pisa1
pdb|4AV7|D Chain D, Structure Determination Of The Double Mutant S233y F250g
From The Sec-Alkyl Sulfatase Pisa1
pdb|4AV7|E Chain E, Structure Determination Of The Double Mutant S233y F250g
From The Sec-Alkyl Sulfatase Pisa1
pdb|4AV7|F Chain F, Structure Determination Of The Double Mutant S233y F250g
From The Sec-Alkyl Sulfatase Pisa1
Length = 668
Score = 30.4 bits (67), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 8/53 (15%)
Query: 170 LSSAIRTVYQRYATY-------LDAFGPDESYLRKKVETELGSKMIFLKMRCA 215
LS+ +R VYQRY + LD F P E+ ++ VE G+ + +MR A
Sbjct: 420 LSTNLRAVYQRYLGFYDGNPANLDPFPPVEAG-KRYVEAMGGADAVLKQMRAA 471
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,556,146
Number of Sequences: 62578
Number of extensions: 200216
Number of successful extensions: 591
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 591
Number of HSP's gapped (non-prelim): 8
length of query: 238
length of database: 14,973,337
effective HSP length: 96
effective length of query: 142
effective length of database: 8,965,849
effective search space: 1273150558
effective search space used: 1273150558
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)