Query 026481
Match_columns 238
No_of_seqs 16 out of 18
Neff 2.1
Searched_HMMs 29240
Date Mon Mar 25 14:36:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026481.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026481hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2rq5_A Protein jumonji; develo 60.2 3.8 0.00013 31.9 1.8 68 130-202 43-115 (121)
2 3mjo_A Ribonucleotide reductas 59.9 65 0.0022 27.6 9.6 97 81-192 21-125 (296)
3 1rbl_M Ribulose 1,5 bisphospha 58.3 7.1 0.00024 30.5 3.0 31 69-100 7-37 (109)
4 1bwv_S Rubisco, protein (ribul 58.3 7.2 0.00024 31.8 3.2 31 71-101 2-32 (138)
5 1svd_M Ribulose bisphosphate c 58.2 6.6 0.00022 30.7 2.8 32 69-101 9-40 (110)
6 3n37_A Ribonucleoside-diphosph 57.2 95 0.0032 26.8 10.7 97 81-192 12-116 (319)
7 1wdd_S Ribulose bisphosphate c 56.4 7 0.00024 31.5 2.8 29 71-100 10-38 (128)
8 3fh2_A Probable ATP-dependent 55.6 44 0.0015 24.7 6.9 46 134-179 47-95 (146)
9 1bxn_I Rubisco, protein (ribul 55.5 7.7 0.00026 31.6 2.9 30 71-100 2-31 (139)
10 2lch_A Protein OR38; structura 54.6 54 0.0018 23.6 7.1 72 115-189 29-105 (113)
11 1gk8_I Ribulose bisphosphate c 51.9 9 0.00031 31.3 2.8 30 71-101 10-39 (140)
12 3dhz_A Ribonucleotide reductas 51.6 1.2E+02 0.004 26.4 10.0 98 81-192 22-126 (329)
13 1i5n_A Chemotaxis protein CHEA 50.8 56 0.0019 25.0 7.0 82 108-189 20-106 (146)
14 2y1q_A CLPC N-domain, negative 49.3 44 0.0015 24.3 6.0 72 134-205 46-144 (150)
15 1tqg_A Chemotaxis protein CHEA 46.7 66 0.0023 22.5 6.4 64 125-188 35-103 (105)
16 4f0h_B Ribulose bisphosphate c 46.6 14 0.00049 30.1 3.2 31 71-101 2-32 (138)
17 3kyj_A CHEA3, putative histidi 42.3 61 0.0021 25.1 6.1 65 124-188 40-109 (144)
18 1e4c_P L-fuculose 1-phosphate 41.8 47 0.0016 26.6 5.5 47 127-181 163-209 (215)
19 2lp4_A Chemotaxis protein CHEA 40.3 1E+02 0.0035 24.9 7.4 67 123-189 35-106 (225)
20 2p0t_A UPF0307 protein pspto_4 37.7 31 0.001 28.8 3.9 45 132-185 22-75 (176)
21 1mty_B Methane monooxygenase h 37.5 37 0.0013 30.9 4.7 50 129-190 318-368 (384)
22 1bh9_B TAFII28; histone fold, 37.4 91 0.0031 23.1 6.1 33 139-175 47-80 (89)
23 3zxw_B Ribulose bisphosphate c 35.5 20 0.00068 28.4 2.3 48 71-119 8-81 (118)
24 3ele_A Amino transferase; RER0 34.2 1.6E+02 0.0053 23.7 7.5 52 154-205 36-91 (398)
25 2jrz_A Histone demethylase jar 34.0 33 0.0011 25.8 3.3 56 130-197 41-100 (117)
26 1h0o_A Ribonucleoside-diphosph 33.1 2.7E+02 0.0093 25.0 11.1 107 70-191 71-187 (390)
27 1wnd_A Putative betaine aldehy 32.4 21 0.00071 32.5 2.2 50 75-124 49-104 (495)
28 3fhf_A Mjogg, N-glycosylase/DN 32.0 1.3E+02 0.0045 24.9 6.9 50 83-132 17-70 (214)
29 3lns_A Benzaldehyde dehydrogen 31.5 52 0.0018 29.3 4.6 73 74-146 16-105 (457)
30 3r84_A Mediator of RNA polymer 31.5 33 0.0011 25.9 2.9 48 109-158 22-76 (86)
31 2cxy_A BAF250B subunit, HBAF25 31.4 67 0.0023 24.3 4.6 50 130-188 52-105 (125)
32 2xwv_A Sialic acid-binding per 30.5 21 0.00072 29.9 1.8 17 167-183 272-288 (312)
33 2r9i_A Putative phage capsid p 29.9 74 0.0025 26.1 4.8 45 92-148 6-50 (141)
34 3fsp_A A/G-specific adenine gl 29.8 2.7E+02 0.0092 23.9 8.9 48 129-176 96-156 (369)
35 1ufb_A TT1696 protein; structu 29.6 51 0.0017 23.8 3.5 74 129-203 29-113 (127)
36 1r42_A Angiotensin I convertin 29.2 3.4E+02 0.012 25.0 13.5 120 82-204 87-253 (615)
37 2w01_A Adenylate cyclase; guan 28.3 42 0.0014 26.1 3.1 57 120-179 33-90 (208)
38 1w3i_A EDA, 2-keto-3-deoxy glu 28.1 2.7E+02 0.0091 23.4 8.6 82 101-185 200-285 (293)
39 1t6c_A Exopolyphosphatase; alp 27.0 71 0.0024 27.3 4.5 46 160-205 49-112 (315)
40 2kk0_A AT-rich interactive dom 26.7 25 0.00085 27.6 1.5 57 130-197 65-125 (145)
41 3e59_A Pyoverdine biosynthesis 26.5 45 0.0015 30.3 3.3 26 184-209 174-199 (330)
42 3oyv_A Imelysin; outer membran 26.1 3.5E+02 0.012 24.1 9.1 100 83-194 186-296 (361)
43 4flb_A Regulation of nuclear P 25.1 30 0.001 25.6 1.6 35 83-118 94-131 (132)
44 1cfz_A Hydrogenase 2 maturatio 24.4 51 0.0018 25.7 2.9 35 155-189 116-153 (162)
45 3n2w_A Beta-peptidyl aminopept 24.2 52 0.0018 30.1 3.3 47 127-179 320-367 (373)
46 1h6g_A Alpha-1 catenin; adhesi 23.8 91 0.0031 26.2 4.5 49 82-130 186-237 (256)
47 1elu_A L-cysteine/L-cystine C- 23.7 82 0.0028 24.9 4.0 29 154-182 16-44 (390)
48 1y6d_A Phosphorelay protein LU 23.2 1.5E+02 0.0052 21.8 5.2 104 80-185 9-119 (120)
49 3iwj_A Putative aminoaldehyde 23.1 1.4E+02 0.0047 27.0 5.9 77 75-151 34-131 (503)
50 3get_A Histidinol-phosphate am 22.8 42 0.0014 26.7 2.2 49 153-204 30-79 (365)
51 3e4x_A APC36150; structural ge 22.7 1.3E+02 0.0046 21.2 4.7 28 165-192 76-103 (157)
52 1syy_A Ribonucleoside-diphosph 22.2 3.8E+02 0.013 23.1 12.1 101 78-192 29-138 (346)
53 1b65_A DMPA, protein (aminopep 22.2 82 0.0028 28.9 4.2 48 128-181 321-371 (375)
54 1k0w_A L-ribulose 5 phosphate 21.2 1.8E+02 0.006 23.4 5.6 44 127-178 179-222 (231)
55 2zzv_A ABC transporter, solute 20.8 32 0.0011 29.0 1.2 18 160-177 302-319 (361)
56 2epj_A Glutamate-1-semialdehyd 20.7 2.4E+02 0.0081 23.3 6.4 55 84-138 73-135 (434)
57 2abk_A Endonuclease III; DNA-r 20.5 2.7E+02 0.0092 22.2 6.5 87 82-173 41-144 (211)
58 1o9d_A 14-3-3-like protein C; 20.3 4.2E+02 0.014 22.9 8.9 73 125-203 8-99 (260)
59 2bsq_E FITA, trafficking prote 20.1 1.1E+02 0.0038 22.1 3.8 36 85-120 9-44 (77)
No 1
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=60.21 E-value=3.8 Score=31.90 Aligned_cols=68 Identities=18% Similarity=0.271 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHH----hhhhhhccCCCCCCCcCCchHHHHHHHHHHHHHHHHHhhcCCChh-HHHHHHHHh
Q 026481 130 NVFSAAEAVEEFIGIIMNI----KMEFDDEIGLSGENVKPLSNELSSAIRTVYQRYATYLDAFGPDES-YLRKKVETE 202 (238)
Q Consensus 130 nvfrAAeAvEeFgGiL~sL----rmeiDDl~GlsGEnVkPLPd~~~~Al~tay~rY~~YLdsFgpdE~-yLrKKVE~E 202 (238)
|.|+--.+|.++||.-.-. =.+|-+-+|+.. ........|++.|.||..=.+.|-|+|. =|.++|++|
T Consensus 43 DL~~Ly~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~-----~~~sa~~~Lr~~Y~k~L~~YE~~~~~e~~~l~~~v~~~ 115 (121)
T 2rq5_A 43 DLACFFRLINEMGGMQQVTDLKKWNKLADMLRIPK-----TAQDRLAKLQEAYCQYLLSYDSLSPEEHRRLEKEVLME 115 (121)
T ss_dssp CHHHHHHHHHHTTSHHHHHHTTCHHHHHHHTCCCT-----TCSSHHHHHHHHHHTTHHHHHHCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHcCcHHHhcccCcHHHHHHHhCCCC-----CcCcHHHHHHHHHHHHhHHHHCcCHHHHhhHHHHHHHH
Confidence 7889999999999932222 235566667632 1123455778777777666666667663 244444444
No 2
>3mjo_A Ribonucleotide reductase subunit R2F; Mn ribonucleotide reductase, RNR, radical enzyme, split SIGN metallocofactor; 1.36A {Corynebacterium ammoniagenes} SCOP: a.25.1.2 PDB: 1uzr_A*
Probab=59.87 E-value=65 Score=27.58 Aligned_cols=97 Identities=15% Similarity=0.189 Sum_probs=60.0
Q ss_pred CCCCCHHHHHHHHHHHHcccCCCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHHHHH-HHH-HHhhhhhhccCC
Q 026481 81 PVIRDPEIQRAFKDLMAADWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEFIG-IIM-NIKMEFDDEIGL 158 (238)
Q Consensus 81 P~i~Dpei~~afKdLmA~sW~elp~svv~~ak~alSk~tdDkAGqeaL~nvfrAAeAvEeFgG-iL~-sLrmeiDDl~Gl 158 (238)
-.|+||.+....|.+.+.-|..=.=.+-+|.+.- .+-| ..-|.++++++..--+.+..=| .++ .+.
T Consensus 21 n~i~y~~~~~~y~k~~~~fW~peEI~ls~D~~dw-~~Ls--~~Er~~~~~~l~~~~~~D~iq~~~~~~~~~--------- 88 (296)
T 3mjo_A 21 NVIPDEKDLEVWDRLTGNFWLPEKIPVSNDIQSW-NKMT--PQEQLATMRVFTGLTLLDTIQGTVGAISLL--------- 88 (296)
T ss_dssp TSCSCHHHHHHHHHHHHTCCCGGGSCGGGGHHHH-HHSC--HHHHHHHHHHHHHHHHHHHHHHHTHHHHHG---------
T ss_pred CCCccHHHHHHHHHHHHcCCCHHHcChhccHHHH-HHCC--HHHHHHHHHHHHHHHHHHHHHHHhhHHHHH---------
Confidence 3689999999999999999974333344444322 1222 2458889998874433333222 111 111
Q ss_pred CCCCCcCCchH-----HHHHHHHHHHH-HHHHHhhcCCCh
Q 026481 159 SGENVKPLSNE-----LSSAIRTVYQR-YATYLDAFGPDE 192 (238)
Q Consensus 159 sGEnVkPLPd~-----~~~Al~tay~r-Y~~YLdsFgpdE 192 (238)
.. -+.|+. .+-+.+++|.+ |..+|+++++++
T Consensus 89 --~~-~~~pe~~~~~~~q~~~E~iHs~sYs~il~tl~~~~ 125 (296)
T 3mjo_A 89 --PD-AETMHEEAVYTNIAFMESVHAKSYSNIFMTLASTP 125 (296)
T ss_dssp --GG-CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHH
T ss_pred --Hh-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 11 223654 56677888877 888999999875
No 3
>1rbl_M Ribulose 1,5 bisphosphate carboxylase/oxygenase ( chain); lyase(carbon-carbon), lyase; HET: CAP; 2.20A {Synechococcus elongatus} SCOP: d.73.1.1 PDB: 1rsc_M*
Probab=58.33 E-value=7.1 Score=30.52 Aligned_cols=31 Identities=16% Similarity=0.396 Sum_probs=26.4
Q ss_pred ccccccccCCCCCCCCCHHHHHHHHHHHHccc
Q 026481 69 CNRSFSEDVAHMPVIRDPEIQRAFKDLMAADW 100 (238)
Q Consensus 69 ~~R~fS~d~~hlP~i~Dpei~~afKdLmA~sW 100 (238)
..|.|- ..+.||+++|.+|.+-+.-|++-.|
T Consensus 7 ~~~~~e-tfSyLP~lt~eqI~kQI~Yll~qGw 37 (109)
T 1rbl_M 7 KERRFE-TFSYLPPLSDRQIAAQIEYMIEQGF 37 (109)
T ss_dssp CCCCCS-TTTTSSCCCHHHHHHHHHHHHHHTC
T ss_pred Cccccc-ccccCCCCCHHHHHHHHHHHHHCCC
Confidence 345554 7999999999999999999998766
No 4
>1bwv_S Rubisco, protein (ribulose bisphosphate carboxylase); carbon dioxide fixation, complex (rubisco-reaction intermedi high specificity factor; HET: KCX CAP; 2.40A {Galdieria partita} SCOP: d.73.1.1 PDB: 1iwa_B
Probab=58.31 E-value=7.2 Score=31.79 Aligned_cols=31 Identities=13% Similarity=0.326 Sum_probs=26.5
Q ss_pred ccccccCCCCCCCCCHHHHHHHHHHHHcccC
Q 026481 71 RSFSEDVAHMPVIRDPEIQRAFKDLMAADWG 101 (238)
Q Consensus 71 R~fS~d~~hlP~i~Dpei~~afKdLmA~sW~ 101 (238)
|.--+..+.||+++|.+|.+-+.-|++-.|.
T Consensus 2 ~~~~etfSyLP~ltdeqI~kQI~Yll~qGw~ 32 (138)
T 1bwv_S 2 RITQGTFSFLPDLTDEQIKKQIDYMISKKLA 32 (138)
T ss_dssp CCCCSTTTTSCCCCHHHHHHHHHHHHHTTCE
T ss_pred ceecceeccCCCCCHHHHHHHHHHHHHCCCe
Confidence 4445678999999999999999999998773
No 5
>1svd_M Ribulose bisphosphate carboxylase small chain; beta-alpha-barrel, lyase; 1.80A {Halothiobacillus neapolitanus} SCOP: d.73.1.1
Probab=58.21 E-value=6.6 Score=30.75 Aligned_cols=32 Identities=16% Similarity=0.376 Sum_probs=26.9
Q ss_pred ccccccccCCCCCCCCCHHHHHHHHHHHHcccC
Q 026481 69 CNRSFSEDVAHMPVIRDPEIQRAFKDLMAADWG 101 (238)
Q Consensus 69 ~~R~fS~d~~hlP~i~Dpei~~afKdLmA~sW~ 101 (238)
..|.|- ..+.||+++|.+|.+-+.-|++-.|.
T Consensus 9 ~~~~~e-tfSyLP~lt~eqI~kQV~Yll~qGw~ 40 (110)
T 1svd_M 9 QSLKYE-TFSYLPPMNAERIRAQIKYAIAQGWS 40 (110)
T ss_dssp CCCCCS-TTTTSCCCCHHHHHHHHHHHHHTTCE
T ss_pred CCcccc-ccccCCCCCHHHHHHHHHHHHHCCCe
Confidence 345554 79999999999999999999987763
No 6
>3n37_A Ribonucleoside-diphosphate reductase 2 subunit BE; ribonucleotide reductase, four-helix bundle, dimanganese CLU oxidoreductase; 1.65A {Escherichia coli} PDB: 3n38_A 3n39_B* 3n3a_B* 3n3b_B* 1r2f_A 2bq1_I* 2r2f_A
Probab=57.19 E-value=95 Score=26.79 Aligned_cols=97 Identities=14% Similarity=0.168 Sum_probs=60.6
Q ss_pred CCCCCHHHHHHHHHHHHcccCCCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHHHHH-HHH-HHhhhhhhccCC
Q 026481 81 PVIRDPEIQRAFKDLMAADWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEFIG-IIM-NIKMEFDDEIGL 158 (238)
Q Consensus 81 P~i~Dpei~~afKdLmA~sW~elp~svv~~ak~alSk~tdDkAGqeaL~nvfrAAeAvEeFgG-iL~-sLrmeiDDl~Gl 158 (238)
=.|+||.+....|.+.+.-|..=.=.+-+|++.- .+-| ..-|.++++++..--+.+..=| .++ .+
T Consensus 12 n~i~y~~~~~~y~~~~~~fW~peEi~ls~D~~dw-~~Lt--~~Er~~~~~~l~~~~~~D~iq~~~~~~~~---------- 78 (319)
T 3n37_A 12 NKISDDKDLEVWNRLTSNFWLPEKVPLSNDIPAW-QTLT--VVEQQLTMRVFTGLTLLDTLQNVIGAPSL---------- 78 (319)
T ss_dssp TSCSCHHHHHHHHHHHHTCCCGGGSCGGGGHHHH-TTSC--HHHHHHHHHHHHHHHHHHHHHHHTHHHHH----------
T ss_pred CCcccHHHHHHHHHHHHcCCCHHhcChhhhHHHH-HhCC--HHHHHHHHHHHHHHHHHHHHHHHhhHHHH----------
Confidence 3689999999999999999974333344555432 2222 3558899999874333322222 111 11
Q ss_pred CCCCCcCCchH-----HHHHHHHHHHH-HHHHHhhcCCCh
Q 026481 159 SGENVKPLSNE-----LSSAIRTVYQR-YATYLDAFGPDE 192 (238)
Q Consensus 159 sGEnVkPLPd~-----~~~Al~tay~r-Y~~YLdsFgpdE 192 (238)
.. . -+.|+. .+-+.+++|.+ |..+|+++++++
T Consensus 79 ~~-~-~~~pe~~~~~~~q~~~E~iHs~sYs~il~tl~~~~ 116 (319)
T 3n37_A 79 MP-D-ALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTK 116 (319)
T ss_dssp GG-G-CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHH
T ss_pred HH-H-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
Confidence 11 1 223665 56677888877 888999999865
No 7
>1wdd_S Ribulose bisphosphate carboxylase small chain C; rubisco, photosynthesis, alpha/beta barrel, N-methylmethioni translational modification, lyase; HET: KCX CAP; 1.35A {Oryza sativa} SCOP: d.73.1.1 PDB: 3axm_S* 3axk_S* 8ruc_I* 1aus_S 1rbo_S* 1rco_S* 1rcx_S* 1rxo_S* 1upm_C* 1upp_I* 1aa1_S* 3rub_S 1rlc_S* 1rld_S 1ej7_S 1ir1_S* 4rub_S*
Probab=56.40 E-value=7 Score=31.49 Aligned_cols=29 Identities=14% Similarity=0.533 Sum_probs=25.0
Q ss_pred ccccccCCCCCCCCCHHHHHHHHHHHHccc
Q 026481 71 RSFSEDVAHMPVIRDPEIQRAFKDLMAADW 100 (238)
Q Consensus 71 R~fS~d~~hlP~i~Dpei~~afKdLmA~sW 100 (238)
|.|- ..+.||+++|.+|.+-+..|++-.|
T Consensus 10 ~~~~-tfSyLP~lt~eqI~kQI~Yll~qGw 38 (128)
T 1wdd_S 10 KKFE-TLSYLPPLTVEDLLKQIEYLLRSKW 38 (128)
T ss_dssp CCCS-TTTTSSCCCHHHHHHHHHHHHHTTC
T ss_pred cccc-ccccCCCCCHHHHHHHHHHHHHCCC
Confidence 4554 6999999999999999999998665
No 8
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=55.59 E-value=44 Score=24.71 Aligned_cols=46 Identities=17% Similarity=0.258 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccCCCCC---CCcCCchHHHHHHHHHHH
Q 026481 134 AAEAVEEFIGIIMNIKMEFDDEIGLSGE---NVKPLSNELSSAIRTVYQ 179 (238)
Q Consensus 134 AAeAvEeFgGiL~sLrmeiDDl~GlsGE---nVkPLPd~~~~Al~tay~ 179 (238)
+++..+++|.-...|+.++++.++-... .--|+.....++|+.|++
T Consensus 47 ~~~iL~~~gv~~~~l~~~l~~~l~~~~~~~~~~~~~s~~~~~vL~~A~~ 95 (146)
T 3fh2_A 47 AAKALESMGISLDAVRQEVEEIIGQGSQPTTGHIPFTPRAKKVLELSLR 95 (146)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHCCCSCCCCSCCCBCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHhccCCCCCcCCCcCCHHHHHHHHHHHH
Confidence 5778899999999999999998874211 113567777777777654
No 9
>1bxn_I Rubisco, protein (ribulose bisphosphate carboxylase small; lyase (carbon-carbon), lyase; 2.70A {Cupriavidus necator} SCOP: d.73.1.1
Probab=55.48 E-value=7.7 Score=31.64 Aligned_cols=30 Identities=17% Similarity=0.448 Sum_probs=25.9
Q ss_pred ccccccCCCCCCCCCHHHHHHHHHHHHccc
Q 026481 71 RSFSEDVAHMPVIRDPEIQRAFKDLMAADW 100 (238)
Q Consensus 71 R~fS~d~~hlP~i~Dpei~~afKdLmA~sW 100 (238)
|.--+..+.||+++|.+|.+-+.-|++-.|
T Consensus 2 ~~~~etfSyLP~ltdeqI~kQI~YlL~qGw 31 (139)
T 1bxn_I 2 RITQGTFSFLPELTDEQITKQLEYCLNQGW 31 (139)
T ss_dssp CCCCSBTTTSSCCCHHHHHHHHHHHHHHTC
T ss_pred ceecceeccCCCCCHHHHHHHHHHHHHCCC
Confidence 444567899999999999999999999776
No 10
>2lch_A Protein OR38; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Thermotoga maritima}
Probab=54.63 E-value=54 Score=23.57 Aligned_cols=72 Identities=10% Similarity=0.165 Sum_probs=49.5
Q ss_pred hcccCCchhHHHHHHHHHHHHHHHHHHHHH-----HHHHhhhhhhccCCCCCCCcCCchHHHHHHHHHHHHHHHHHhhcC
Q 026481 115 LSRNNDDKAGQEVLKNVFSAAEAVEEFIGI-----IMNIKMEFDDEIGLSGENVKPLSNELSSAIRTVYQRYATYLDAFG 189 (238)
Q Consensus 115 lSk~tdDkAGqeaL~nvfrAAeAvEeFgGi-----L~sLrmeiDDl~GlsGEnVkPLPd~~~~Al~tay~rY~~YLdsFg 189 (238)
+.++.+| .+.+..+||+|-.+.--.|+ |..+=-++.|++..--++-.++...+.+.|..+++.-..+++.+.
T Consensus 29 le~~~~d---~~~~~~l~R~~HTlKGsa~~~G~~~l~~lah~~E~~l~~~r~~~~~~~~~l~~~l~~~~d~l~~~l~~~~ 105 (113)
T 2lch_A 29 VEKNPED---MEYWNKIYRLVHTMKEITETMGFSSVAKVLHTIMNLVDKMLNSEIKITSDLIDKVKKKLDMVTRELDKKV 105 (113)
T ss_dssp HHHCTTC---HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTSTTTCCCHHHHHHHHHHHHHHHHHHGGGG
T ss_pred HHhCCCC---HHHHHHHHHHHHhHHHHHHhcChHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444443 68899999999877655553 445545566655432233346778899999999999999988764
No 11
>1gk8_I Ribulose bisphosphate carboxylase small chain 1; lyase, rubisco, photosynthesis; HET: KCX CAP; 1.4A {Chlamydomonas reinhardtii} SCOP: d.73.1.1 PDB: 2v63_I* 2v67_I* 2v68_I* 2v69_I* 2v6a_I* 2vdh_I* 2vdi_I* 1uw9_C* 1uwa_C* 1ir2_I* 1uzd_C* 1uzh_C*
Probab=51.87 E-value=9 Score=31.34 Aligned_cols=30 Identities=20% Similarity=0.464 Sum_probs=26.0
Q ss_pred ccccccCCCCCCCCCHHHHHHHHHHHHcccC
Q 026481 71 RSFSEDVAHMPVIRDPEIQRAFKDLMAADWG 101 (238)
Q Consensus 71 R~fS~d~~hlP~i~Dpei~~afKdLmA~sW~ 101 (238)
|.|- ..+.||+++|.+|.+-+.-|++-.|.
T Consensus 10 ~~~e-tfSyLP~lt~eqI~kQI~YlL~qGw~ 39 (140)
T 1gk8_I 10 KMFE-TFSYLPPLTDEQIAAQVDYIVANGWI 39 (140)
T ss_dssp CCCS-TTTTSSCCCHHHHHHHHHHHHHTTCE
T ss_pred ceec-ccccCCCCCHHHHHHHHHHHHHCCCE
Confidence 4554 79999999999999999999988774
No 12
>3dhz_A Ribonucleotide reductase subunit R2F; metal free, hydrogen bond, metal binding protein; 1.63A {Corynebacterium ammoniagenes} SCOP: a.25.1.2 PDB: 1kgo_A 1kgp_A 1oqu_A 1kgn_A
Probab=51.63 E-value=1.2e+02 Score=26.38 Aligned_cols=98 Identities=16% Similarity=0.178 Sum_probs=60.2
Q ss_pred CCCCCHHHHHHHHHHHHcccCCCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHHHHH-HHHHHhhhhhhccCCC
Q 026481 81 PVIRDPEIQRAFKDLMAADWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEFIG-IIMNIKMEFDDEIGLS 159 (238)
Q Consensus 81 P~i~Dpei~~afKdLmA~sW~elp~svv~~ak~alSk~tdDkAGqeaL~nvfrAAeAvEeFgG-iL~sLrmeiDDl~Gls 159 (238)
=.|+||.+....|.+.+.-|..=.=.+-+|++.- .+-| ..-|.++++++..--+.+..=| .++. .+.
T Consensus 22 n~i~y~~~~~~y~~~~~~fW~peEI~ls~D~~dw-~~Lt--~~Er~~~~~~l~~~~~~D~iq~~~~~~---------~~~ 89 (329)
T 3dhz_A 22 NVIPDEKDLEVWDRLTGNFWLPEKIPVSNDIQSW-NKMT--PQEQLATMRVFTGLTLLDTIQGTVGAI---------SLL 89 (329)
T ss_dssp TSCSSHHHHHHHHHHHHTCCCGGGSCGGGGHHHH-HTSC--HHHHHHHHHHHHHHHHHHHHHHHTHHH---------HTG
T ss_pred CCcccHHHHHHHHHHHHcCCCHhhcChhhhHHHH-HhCC--HHHHHHHHHHHHHHHHHHHHHHHHhHH---------HHH
Confidence 3689999999999999999974333344454432 2222 3558899998874333332222 1111 011
Q ss_pred CCCCcCCchH-----HHHHHHHHHHH-HHHHHhhcCCCh
Q 026481 160 GENVKPLSNE-----LSSAIRTVYQR-YATYLDAFGPDE 192 (238)
Q Consensus 160 GEnVkPLPd~-----~~~Al~tay~r-Y~~YLdsFgpdE 192 (238)
. .| +.|+. .+-+.+++|.+ |..+|+++++++
T Consensus 90 ~-~~-~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~~~~ 126 (329)
T 3dhz_A 90 P-DA-ETMHEEAVYTNIAFMESVHAKSYSNIFMTLASTP 126 (329)
T ss_dssp G-GC-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHH
T ss_pred H-Hc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 1 12 33665 56677888877 888999998764
No 13
>1i5n_A Chemotaxis protein CHEA; four-helix bundle, transferase; 2.14A {Salmonella typhimurium} SCOP: a.24.10.3
Probab=50.79 E-value=56 Score=24.97 Aligned_cols=82 Identities=15% Similarity=0.196 Sum_probs=52.1
Q ss_pred HHHHHhhhcccCCchhHHHHHHHHHHHHHHHHHHHHH-----HHHHhhhhhhccCCCCCCCcCCchHHHHHHHHHHHHHH
Q 026481 108 IHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEFIGI-----IMNIKMEFDDEIGLSGENVKPLSNELSSAIRTVYQRYA 182 (238)
Q Consensus 108 v~~ak~alSk~tdDkAGqeaL~nvfrAAeAvEeFgGi-----L~sLrmeiDDl~GlsGEnVkPLPd~~~~Al~tay~rY~ 182 (238)
+...+.+|-.-..+....+.+..+||+|-.+.=-+|+ |..+=-++.|++..--++--++...+.+.|..+++.-.
T Consensus 20 L~~le~~L~~le~~~~d~~~l~~lfR~aHTLKGsA~~~G~~~l~~lah~lE~~l~~~r~g~~~~~~~l~~~l~~~~D~l~ 99 (146)
T 1i5n_A 20 LADMEQHLLDLVPESPDAEQLNAIFRAAHSIKGGAGTFGFTILQETTHLMENLLDEARRGEMQLNTDIINLFLETKDIMQ 99 (146)
T ss_dssp HHHHHHHHHHCCTTSCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHhHhHHccCHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHH
Confidence 3444444432222222468899999999877655553 45555566665432222223667788899999999999
Q ss_pred HHHhhcC
Q 026481 183 TYLDAFG 189 (238)
Q Consensus 183 ~YLdsFg 189 (238)
.+++.+.
T Consensus 100 ~~l~~~~ 106 (146)
T 1i5n_A 100 EQLDAYK 106 (146)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998873
No 14
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=49.25 E-value=44 Score=24.28 Aligned_cols=72 Identities=21% Similarity=0.188 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccCCCC--CCCcCCchHHHHHHHHHHHH------------------------H-HHHHh
Q 026481 134 AAEAVEEFIGIIMNIKMEFDDEIGLSG--ENVKPLSNELSSAIRTVYQR------------------------Y-ATYLD 186 (238)
Q Consensus 134 AAeAvEeFgGiL~sLrmeiDDl~GlsG--EnVkPLPd~~~~Al~tay~r------------------------Y-~~YLd 186 (238)
+++..+++|.-+..|+.++++.++-.- ...-|+.....++|+.+.+- + ..+|.
T Consensus 46 ~~~iL~~~g~~~~~l~~~l~~~l~~~~~~~~~~~~s~~~~~vL~~A~~~A~~~~~~~i~~ehlLlall~~~~~~a~~~L~ 125 (150)
T 2y1q_A 46 AAKALQALGLGSEKIQKEVESLIGRAQEMSQTIHYTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLN 125 (150)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHCCC-----CCEECHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCCSHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHhccCCcccccCCCCHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHHhCCCcHHHHHHH
Confidence 567788999999999999998876321 11125666777777665432 2 24566
Q ss_pred hcCCChhHHHHHHHHhhhh
Q 026481 187 AFGPDESYLRKKVETELGS 205 (238)
Q Consensus 187 sFgpdE~yLrKKVE~ELGt 205 (238)
.||-+..-|++.++...|.
T Consensus 126 ~~gi~~~~l~~~i~~~~g~ 144 (150)
T 2y1q_A 126 NLGVSLNKARQQVLQLLGN 144 (150)
T ss_dssp HTTCCHHHHHHHHHHHHHC
T ss_pred HcCCCHHHHHHHHHHHHCC
Confidence 7777766677666655553
No 15
>1tqg_A Chemotaxis protein CHEA; histidine kinase, phosphotransfer, signal transduction, transferase; 0.98A {Thermotoga maritima} SCOP: a.24.10.3
Probab=46.68 E-value=66 Score=22.55 Aligned_cols=64 Identities=11% Similarity=0.227 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHhhhhhhccCCCCCCCcCCchHHHHHHHHHHHHHHHHHhhc
Q 026481 125 QEVLKNVFSAAEAVEEFIGI-----IMNIKMEFDDEIGLSGENVKPLSNELSSAIRTVYQRYATYLDAF 188 (238)
Q Consensus 125 qeaL~nvfrAAeAvEeFgGi-----L~sLrmeiDDl~GlsGEnVkPLPd~~~~Al~tay~rY~~YLdsF 188 (238)
++.+..+||+|-.+.--.|+ |..+=.++.+++..--++-.+....+.+.|..++++-..+++.+
T Consensus 35 ~~~~~~l~r~~HtLKGsa~~~G~~~l~~la~~lE~~l~~~r~~~~~~~~~~~~~l~~~~d~l~~~l~~~ 103 (105)
T 1tqg_A 35 MELINEAFRALHTLKGMAGTMGFSSMAKLCHTLENILDKARNSEIKITSDLLDKIFAGVDMITRMVDKI 103 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHhcChHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 67889999999877655553 44555566666532112224567788899999999988888754
No 16
>4f0h_B Ribulose bisphosphate carboxylase small chain; alpha beta domain, catalytic domain TIM barrel, carboxylase/oxygenase, nitrosylation; 1.96A {Galdieria sulphuraria} PDB: 4f0k_B 4f0m_B 1iwa_B 1bwv_S*
Probab=46.62 E-value=14 Score=30.11 Aligned_cols=31 Identities=13% Similarity=0.326 Sum_probs=26.0
Q ss_pred ccccccCCCCCCCCCHHHHHHHHHHHHcccC
Q 026481 71 RSFSEDVAHMPVIRDPEIQRAFKDLMAADWG 101 (238)
Q Consensus 71 R~fS~d~~hlP~i~Dpei~~afKdLmA~sW~ 101 (238)
|.=-+..+-||+++|.+|.+-+.-|++-.|.
T Consensus 2 ~~t~~tfSyLP~ltd~qI~kQI~YlL~qGw~ 32 (138)
T 4f0h_B 2 RITQGTFSFLPDLTDEQIKKQIDYMISKKLA 32 (138)
T ss_dssp CCCCSTTTTSCCCCHHHHHHHHHHHHHTTCE
T ss_pred cccccccccCCCCCHHHHHHHHHHHHhCCCE
Confidence 3334677899999999999999999998773
No 17
>3kyj_A CHEA3, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_A
Probab=42.26 E-value=61 Score=25.12 Aligned_cols=65 Identities=14% Similarity=0.179 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHhhhhhhccCCCCCCCcCCchHHHHHHHHHHHHHHHHHhhc
Q 026481 124 GQEVLKNVFSAAEAVEEFIGI-----IMNIKMEFDDEIGLSGENVKPLSNELSSAIRTVYQRYATYLDAF 188 (238)
Q Consensus 124 GqeaL~nvfrAAeAvEeFgGi-----L~sLrmeiDDl~GlsGEnVkPLPd~~~~Al~tay~rY~~YLdsF 188 (238)
..+.+..+||++--+.--+|+ |..+=-++.|+...--++-.++...+.+.|-.++++...+++..
T Consensus 40 d~e~l~~lfR~~HTLKGsA~~~G~~~i~~laH~lE~ll~~lr~g~~~~~~~l~dlll~~~D~l~~lv~~~ 109 (144)
T 3kyj_A 40 AAAHVGPLFRAVHTFKGNSRVLGLSVVESRAHLCEDLIGLVRDAGVPMDGEIVEILLFASDTLRAMLEET 109 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhHhhHHHhcCchHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 579999999999877654443 44555566666544333445678899999999999988888765
No 18
>1e4c_P L-fuculose 1-phosphate aldolase; aldolase (class II), bacterial L-fucose metabolism; 1.66A {Escherichia coli} SCOP: c.74.1.1 PDB: 1fua_A 2fua_A 3fua_A 4fua_A* 1dzv_P 1e4b_P 1e47_P* 1e48_P* 1dzz_P 1e46_P 1dzu_P 1dzy_P 1dzx_P 1dzw_P 1e49_P 1e4a_P
Probab=41.81 E-value=47 Score=26.60 Aligned_cols=47 Identities=17% Similarity=0.215 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcCCchHHHHHHHHHHHHH
Q 026481 127 VLKNVFSAAEAVEEFIGIIMNIKMEFDDEIGLSGENVKPLSNELSSAIRTVYQRY 181 (238)
Q Consensus 127 aL~nvfrAAeAvEeFgGiL~sLrmeiDDl~GlsGEnVkPLPd~~~~Al~tay~rY 181 (238)
-+..+|..++.+|+.--+....+ ..|+.+.+||++..+.+...|+.|
T Consensus 163 ~~~eA~~~~~~lE~~a~~~~~a~--------~~g~~~~~l~~~~~~~~~~~~~~y 209 (215)
T 1e4c_P 163 NLEKALWLAHEVEVLAQLYLTTL--------AITDPVPVLSDEEIAVVLEKFKTF 209 (215)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHH--------TTCSSCCCCCHHHHHHHHHHC---
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH--------HcCCCCCCCCHHHHHHHHHHHHhc
Confidence 36677888888887655433222 125666889999888887766544
No 19
>2lp4_A Chemotaxis protein CHEA; two component signaling system, histidine phosphotransfer DO response regulator; NMR {Escherichia coli}
Probab=40.27 E-value=1e+02 Score=24.91 Aligned_cols=67 Identities=15% Similarity=0.214 Sum_probs=48.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH-----HHHHhhhhhhccCCCCCCCcCCchHHHHHHHHHHHHHHHHHhhcC
Q 026481 123 AGQEVLKNVFSAAEAVEEFIGI-----IMNIKMEFDDEIGLSGENVKPLSNELSSAIRTVYQRYATYLDAFG 189 (238)
Q Consensus 123 AGqeaL~nvfrAAeAvEeFgGi-----L~sLrmeiDDl~GlsGEnVkPLPd~~~~Al~tay~rY~~YLdsFg 189 (238)
...+.|..+||++--+.--+|+ |..+=-.+.|+...-=++--++..++.+.|..+.+.....|+.+.
T Consensus 35 ~d~~~l~~ifR~~HTlKG~a~~~g~~~i~~laH~~E~~l~~~r~g~~~~~~~~~~ll~~~~D~l~~~l~~~~ 106 (225)
T 2lp4_A 35 PDAEQLNAIFRAAHSIKGGAGTFGFTILQETTHLMENLLDEARRGEMQLNTDIINLFLETKDIMQEQLDAYK 106 (225)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhhhHHHhcCHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478999999999877654443 444444555555443344467888999999999999999998874
No 20
>2p0t_A UPF0307 protein pspto_4464; APC85033, conserved putative protein, pseudomonas syringae P STR. DC3000, structural genomics, PSI-2; 2.19A {Pseudomonas syringae PV} SCOP: a.290.1.1
Probab=37.71 E-value=31 Score=28.77 Aligned_cols=45 Identities=16% Similarity=0.241 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHhh-hhhhccCCCCCCCcCCchHHHHHHHH--------HHHHHHHHH
Q 026481 132 FSAAEAVEEFIGIIMNIKM-EFDDEIGLSGENVKPLSNELSSAIRT--------VYQRYATYL 185 (238)
Q Consensus 132 frAAeAvEeFgGiL~sLrm-eiDDl~GlsGEnVkPLPd~~~~Al~t--------ay~rY~~YL 185 (238)
=|.++|+.++|--|++|.. .|+=+ |||+.+.+||.. ++.|=+.|+
T Consensus 22 KRe~~~lq~LG~eL~~Ls~~ql~kl---------pL~e~L~~Ai~~a~ri~~~earRRQlqyI 75 (176)
T 2p0t_A 22 KRELHALVDLGERLTTLKADVLAKL---------PLTDALRKALAEAPKHTANIARKRHILFI 75 (176)
T ss_dssp ---CHHHHHHHHHHTTSCHHHHTTS---------CCCHHHHHHHHHGGGCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHhcC---------CCCHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 3788999999999998854 33332 999999999854 678877776
No 21
>1mty_B Methane monooxygenase hydroxylase; dinuclear iron center monooxygenase; 1.70A {Methylococcus capsulatus str} SCOP: a.25.1.2 PDB: 1xvb_C 1fyz_C 1fz0_C 1fz2_C 1fz3_C 1fz4_C 1fz5_C 1fz6_C 1fz7_C 1fz8_C 1fz9_C 1fzh_C 1fzi_C 1xu3_C 1xu5_C 1fz1_C 1xvc_C 1xvd_C 1xve_C 1xvf_C ...
Probab=37.50 E-value=37 Score=30.88 Aligned_cols=50 Identities=16% Similarity=0.349 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcCCchHHHHHHHHHHHH-HHHHHhhcCC
Q 026481 129 KNVFSAAEAVEEFIGIIMNIKMEFDDEIGLSGENVKPLSNELSSAIRTVYQR-YATYLDAFGP 190 (238)
Q Consensus 129 ~nvfrAAeAvEeFgGiL~sLrmeiDDl~GlsGEnVkPLPd~~~~Al~tay~r-Y~~YLdsFgp 190 (238)
+=.||+.+|+..|++++... + -|. .| ++...+|+..++++ +..||+.+|=
T Consensus 318 ~W~~ra~~A~~~l~p~~~~~--------~-~~~-~~--~~~~~~al~~v~~~~~~~~l~k~Gl 368 (384)
T 1mty_B 318 KWLEPTIAALRDFMGLFAKL--------P-AGT-TD--KEEITASLYRVVDDWIEDYASRIDF 368 (384)
T ss_dssp HHHHHHHHHHHHHGGGGGGS--------C-TTS-CC--HHHHHHHHHHHHHHHHHHTGGGGTC
T ss_pred HHHHHHHHHHHhhhHHHHhc--------c-ccc-cc--chhHHHHHHHHHHHHHHHHHHHcCC
Confidence 34578999999998876410 0 010 11 78899999999999 9999999984
No 22
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=37.43 E-value=91 Score=23.14 Aligned_cols=33 Identities=21% Similarity=0.556 Sum_probs=17.7
Q ss_pred HHHHHHHHHHhhhhhhccCCCCCCCcCC-chHHHHHHH
Q 026481 139 EEFIGIIMNIKMEFDDEIGLSGENVKPL-SNELSSAIR 175 (238)
Q Consensus 139 EeFgGiL~sLrmeiDDl~GlsGEnVkPL-Pd~~~~Al~ 175 (238)
-.|=|-|++.=+.+-|--| +.+|| |.|+..|.|
T Consensus 47 KvfVgelVE~A~~V~~~~~----~~~Pl~P~HireA~r 80 (89)
T 1bh9_B 47 KVFVGEVVEEALDVCEKWG----EMPPLQPKHMREAVR 80 (89)
T ss_dssp HHHHHHHHHHHHHHHHHTT----CCSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc----CCCCCCcHHHHHHHH
Confidence 3566666655555555433 35787 555544443
No 23
>3zxw_B Ribulose bisphosphate carboxylase small chain; CO2/O2 specificity, carbon dioxide fixation, photosynthesis, thermostability; HET: KCX CAP; 2.10A {Thermosynechococcus elongatus} PDB: 2ybv_B*
Probab=35.54 E-value=20 Score=28.40 Aligned_cols=48 Identities=21% Similarity=0.457 Sum_probs=33.2
Q ss_pred ccccccCCCCCCCCCHHHHHHHHHHHHccc-----------------C--CCc-------hhHHHHHHhhhcccC
Q 026481 71 RSFSEDVAHMPVIRDPEIQRAFKDLMAADW-----------------G--ELP-------ASVIHDAKSALSRNN 119 (238)
Q Consensus 71 R~fS~d~~hlP~i~Dpei~~afKdLmA~sW-----------------~--elp-------~svv~~ak~alSk~t 119 (238)
|.| |+.+-||+++|.+|.+-..-|++-.| + .|| +.|+.+++.|++...
T Consensus 8 kkf-eTfSyLP~Lt~eqI~kQV~yll~qGw~~~lE~~d~~~~~~~yW~mWklPmf~~~d~~~Vl~Ele~C~k~~p 81 (118)
T 3zxw_B 8 RRY-ETFSYLPPLSDAQIARQIQYAIDQGYHPCVEFNETSNAEIRYWTMWKLPLFNCTNAQDVLNEVQQCRSEYP 81 (118)
T ss_dssp -------CCSCCCCHHHHHHHHHHHHHHTCEEEEEEESCCCTTCCCCEEESSCCTTCCCHHHHHHHHHHHHHHCT
T ss_pred ccc-cccccCCCCCHHHHHHHHHHHHhCCCeeEEEeccCCCcccCEEeecccCCcCCCCHHHHHHHHHHHHHHCC
Confidence 556 68999999999999999999998655 3 565 567777777766543
No 24
>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}
Probab=34.24 E-value=1.6e+02 Score=23.71 Aligned_cols=52 Identities=15% Similarity=0.289 Sum_probs=33.7
Q ss_pred hccCCC-CCCCcCCchHHHHHHHHHHHHHHHH-HhhcCCCh--hHHHHHHHHhhhh
Q 026481 154 DEIGLS-GENVKPLSNELSSAIRTVYQRYATY-LDAFGPDE--SYLRKKVETELGS 205 (238)
Q Consensus 154 Dl~Gls-GEnVkPLPd~~~~Al~tay~rY~~Y-LdsFgpdE--~yLrKKVE~ELGt 205 (238)
|++-++ |....|.|+.+.+|++.+.+++..- +..++|.. .-||+.+...|+.
T Consensus 36 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~ 91 (398)
T 3ele_A 36 NVYDFSIGNPSIPAPQIVNDTIKELVTDYDSVALHGYTSAQGDVETRAAIAEFLNN 91 (398)
T ss_dssp GCEECCSCCCCSCCCHHHHHHHHHHHHHSCHHHHHSCCCTTCCHHHHHHHHHHHHH
T ss_pred CeEEeecCCCCCCCCHHHHHHHHHHHhcCCccccCCcCCCCCcHHHHHHHHHHHHH
Confidence 333333 4444577889999999888874211 44566665 5588888877754
No 25
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=33.95 E-value=33 Score=25.82 Aligned_cols=56 Identities=18% Similarity=0.272 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHH-HH---HhhhhhhccCCCCCCCcCCchHHHHHHHHHHHHHHHHHhhcCCChhHHHH
Q 026481 130 NVFSAAEAVEEFIGII-MN---IKMEFDDEIGLSGENVKPLSNELSSAIRTVYQRYATYLDAFGPDESYLRK 197 (238)
Q Consensus 130 nvfrAAeAvEeFgGiL-~s---LrmeiDDl~GlsGEnVkPLPd~~~~Al~tay~rY~~YLdsFgpdE~yLrK 197 (238)
|.|+-=.+|.++||.- |+ +=.+|-+-+|+... | .....|++.|.| ||..| |.|++.
T Consensus 41 DL~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~-----~-~a~~~Lk~~Y~k---~L~~y---E~~~~~ 100 (117)
T 2jrz_A 41 DLYSLSKIVVEEGGYEAICKDRRWARVAQRLNYPPG-----K-NIGSLLRSHYER---IVYPY---EMYQSG 100 (117)
T ss_dssp CHHHHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTT-----C-THHHHHHHHHHH---TTHHH---HHHHHH
T ss_pred cHHHHHHHHHHccCHHHhcccCcHHHHHHHhCCCCC-----C-cHHHHHHHHHHH---HHHHH---HHHHhc
Confidence 7888889999999933 22 22356666776522 2 344566766655 56666 456554
No 26
>1h0o_A Ribonucleoside-diphosphate reductase; oxidoreductase, ribonucleotide reductase, dinuclear metal-cluster; 2.2A {Mus musculus} SCOP: a.25.1.2 PDB: 1h0n_A 1w68_A 1w69_A 1xsm_A 2uw2_A 3hf1_A 2vux_A
Probab=33.08 E-value=2.7e+02 Score=25.01 Aligned_cols=107 Identities=13% Similarity=0.213 Sum_probs=65.8
Q ss_pred cccccccCCC--CCCCCCHHHHHHHHHHHHcccCCCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHHHHH-HHH
Q 026481 70 NRSFSEDVAH--MPVIRDPEIQRAFKDLMAADWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEFIG-IIM 146 (238)
Q Consensus 70 ~R~fS~d~~h--lP~i~Dpei~~afKdLmA~sW~elp~svv~~ak~alSk~tdDkAGqeaL~nvfrAAeAvEeFgG-iL~ 146 (238)
.+.|-++... +-.|+.|++.+..|...+.-|..=.=.+-+|.+.-- +-++ .-|.+++.++..=-+.+..=| .++
T Consensus 71 e~ll~~n~~r~~l~PikY~~~~~ly~k~~~nfW~peEIdls~D~~dw~-~Lt~--~Er~~~~~vla~fa~~Dsiv~~nl~ 147 (390)
T 1h0o_A 71 EPLLRENPRRFVVFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWE-ALKP--DERHFISHVLAFFAASDGIVNENLV 147 (390)
T ss_dssp CTTTSSCCSCCCSSSCSCHHHHHHHHHHHHTCCCGGGSCCTTHHHHHH-HSCH--HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCCCcccccCCCCCHHHHHHHHHHHHcCCchhhcchhccHHHHH-HCCH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555544 466999999999999999999743323334544321 2222 348888888876555444333 121
Q ss_pred -HHhhhhhhccCCCCCCCcCCchH-----HHHHHHHHH-HHHHHHHhhcCCC
Q 026481 147 -NIKMEFDDEIGLSGENVKPLSNE-----LSSAIRTVY-QRYATYLDAFGPD 191 (238)
Q Consensus 147 -sLrmeiDDl~GlsGEnVkPLPd~-----~~~Al~tay-~rY~~YLdsFgpd 191 (238)
.+.-++ +.|+. .+-+.+++| +=|..+|++++.|
T Consensus 148 ~~~~~~v------------~~pE~~~~~~~Q~~~EaiHsesYS~il~tl~~d 187 (390)
T 1h0o_A 148 ERFSQEV------------QVTEARCFYGFQIAMENIHSEMYSLLIDTYIKD 187 (390)
T ss_dssp HTHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHhC------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 122222 55643 345678888 4589999999964
No 27
>1wnd_A Putative betaine aldehyde dehydrogenase; NADH, fluorescence, kinetics, oxidor; 2.10A {Escherichia coli} SCOP: c.82.1.1 PDB: 1wnb_A
Probab=32.44 E-value=21 Score=32.51 Aligned_cols=50 Identities=14% Similarity=0.263 Sum_probs=34.1
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHc--ccCCCchh----HHHHHHhhhcccCCchhH
Q 026481 75 EDVAHMPVIRDPEIQRAFKDLMAA--DWGELPAS----VIHDAKSALSRNNDDKAG 124 (238)
Q Consensus 75 ~d~~hlP~i~Dpei~~afKdLmA~--sW~elp~s----vv~~ak~alSk~tdDkAG 124 (238)
+-+.++|.....++..|++..-++ .|..+|.. ++..+...|.++.|+.+-
T Consensus 49 ~~i~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~ 104 (495)
T 1wnd_A 49 DVLLEIAEASAEQVDAAVRAADAAFAEWGQTTPKVRAECLLKLADVIEENGQVFAE 104 (495)
T ss_dssp EEEEEEECCCHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678888888888888776654 69999854 455556666666555543
No 28
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A*
Probab=31.97 E-value=1.3e+02 Score=24.94 Aligned_cols=50 Identities=12% Similarity=0.129 Sum_probs=36.0
Q ss_pred CCCHHH----HHHHHHHHHcccCCCchhHHHHHHhhhcccCCchhHHHHHHHHH
Q 026481 83 IRDPEI----QRAFKDLMAADWGELPASVIHDAKSALSRNNDDKAGQEVLKNVF 132 (238)
Q Consensus 83 i~Dpei----~~afKdLmA~sW~elp~svv~~ak~alSk~tdDkAGqeaL~nvf 132 (238)
++||++ ++.+.+.-+--|..-++...--+--.||.+|.|+....|..+.|
T Consensus 17 ~~~~~~~~~i~~r~~ef~~~~~~~~~~~fe~Lv~~ILsqqt~~~~v~~a~~~L~ 70 (214)
T 3fhf_A 17 LKNSEIKDIIDKRIQEFKSFKNKSNEEWFKELCFCILTANFTAEGGIRIQKEIG 70 (214)
T ss_dssp HHTSTHHHHHHHHHHHHHGGGGSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHT
T ss_pred hccHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 356444 45555554444666667777778888999999999988888887
No 29
>3lns_A Benzaldehyde dehydrogenase; oxidoreductase, NADP+, class 3 aldehyde dehyd adduct, covalent catalysis, mandelate racemase pathway; HET: ZBZ NAP; 2.50A {Pseudomonas putida} PDB: 3lv1_A*
Probab=31.55 E-value=52 Score=29.30 Aligned_cols=73 Identities=14% Similarity=0.129 Sum_probs=41.8
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHc--ccCCCchh----HHHHHHhhhcccCCchhHH----------HHH-HHHHHHHH
Q 026481 74 SEDVAHMPVIRDPEIQRAFKDLMAA--DWGELPAS----VIHDAKSALSRNNDDKAGQ----------EVL-KNVFSAAE 136 (238)
Q Consensus 74 S~d~~hlP~i~Dpei~~afKdLmA~--sW~elp~s----vv~~ak~alSk~tdDkAGq----------eaL-~nvfrAAe 136 (238)
++.+.++|..+..++..+++..-++ .|..+|.. ++..+...|.++.|+.+-- |+. ..+.++++
T Consensus 16 ~~~i~~v~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ea~~~ev~~~~~ 95 (457)
T 3lns_A 16 DDDDKHMNYLSPAKIDSLFSAQKAYFATRATADVGFRKQSLERLKEAVINNKEALYSALAEDLGKPKDVVDLAEIGAVLH 95 (457)
T ss_dssp -------CCCCHHHHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHCCCHHHHHHHTHHHHHH
T ss_pred CCeeeecCCCCHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 4678889999988998888877654 69998864 4555666666666655432 333 24555555
Q ss_pred HHHHHHHHHH
Q 026481 137 AVEEFIGIIM 146 (238)
Q Consensus 137 AvEeFgGiL~ 146 (238)
.++.|.+.+.
T Consensus 96 ~~~~~a~~~~ 105 (457)
T 3lns_A 96 EIDFALAHLD 105 (457)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555554443
No 30
>3r84_A Mediator of RNA polymerase II transcription subun; four-helix bundle, nucleus; HET: MSE; 2.05A {Saccharomyces cerevisiae}
Probab=31.45 E-value=33 Score=25.89 Aligned_cols=48 Identities=23% Similarity=0.399 Sum_probs=31.7
Q ss_pred HHHHhhhcccCCchhHHHHHHHHHHHHHHHHHHHHHH----HHHhhh---hhhccCC
Q 026481 109 HDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEFIGII----MNIKME---FDDEIGL 158 (238)
Q Consensus 109 ~~ak~alSk~tdDkAGqeaL~nvfrAAeAvEeFgGiL----~sLrme---iDDl~Gl 158 (238)
..|-.++..-+..|.|-+++|..|. +++.+|...| +.||.| +||.+|-
T Consensus 22 ~~as~~i~tls~~k~~~~~~K~~F~--~~t~~fy~tL~~v~v~LrkEIk~LdEnig~ 76 (86)
T 3r84_A 22 QEASQVTFIFGELKRGNESVKPQFE--NHVKQFYERLDKSTTQLRKEIQLLDENVGT 76 (86)
T ss_dssp HHHHHHHHHHHHHHTTCGGGHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHTBTT
T ss_pred HHHHHHHHHhhcccCCcHhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 3444444444445555577777775 6788898876 467866 6888886
No 31
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=31.40 E-value=67 Score=24.30 Aligned_cols=50 Identities=26% Similarity=0.418 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHH-HH---HhhhhhhccCCCCCCCcCCchHHHHHHHHHHHHHHHHHhhc
Q 026481 130 NVFSAAEAVEEFIGII-MN---IKMEFDDEIGLSGENVKPLSNELSSAIRTVYQRYATYLDAF 188 (238)
Q Consensus 130 nvfrAAeAvEeFgGiL-~s---LrmeiDDl~GlsGEnVkPLPd~~~~Al~tay~rY~~YLdsF 188 (238)
|.|+--.+|.++||.- |+ .=.+|-+-+|+.. +......|+..|.|| |..|
T Consensus 52 DL~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~------~~s~~~~Lk~~Y~k~---L~~y 105 (125)
T 2cxy_A 52 DLFRLYVCVKEIGGLAQVNKNKKWRELATNLNVGT------SSSAASSLKKQYIQY---LFAF 105 (125)
T ss_dssp CHHHHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCS------SHHHHHHHHHHHHHH---THHH
T ss_pred cHHHHHHHHHHcCCHHHhcccCcHHHHHHHhCCCC------CCcHHHHHHHHHHHH---HHHH
Confidence 7888889999999933 22 3346666777653 235566777776664 5555
No 32
>2xwv_A Sialic acid-binding periplasmic protein SIAP; transport protein, trap, sugar transport; HET: SLB; 1.05A {Haemophilus influenzae} PDB: 2xxk_A* 2xa5_A* 2wyp_A* 2wx9_A* 2xwo_A* 2xwk_A* 2v4c_A* 2wyk_A* 2xwi_A* 3b50_A* 2cey_A 2cex_A
Probab=30.54 E-value=21 Score=29.86 Aligned_cols=17 Identities=6% Similarity=0.317 Sum_probs=13.5
Q ss_pred chHHHHHHHHHHHHHHH
Q 026481 167 SNELSSAIRTVYQRYAT 183 (238)
Q Consensus 167 Pd~~~~Al~tay~rY~~ 183 (238)
.+.+.+|.+.+|+.|.+
T Consensus 272 ~~~~~~a~~~v~~~~~~ 288 (312)
T 2xwv_A 272 LVPFKESMKPYYAEFVK 288 (312)
T ss_dssp SHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46788888989988764
No 33
>2r9i_A Putative phage capsid protein; putative phage capsid domain, protein structure initi structural genomics; 2.60A {Corynebacterium diphtheriae nctc 13129ORGANISM_TAXID}
Probab=29.89 E-value=74 Score=26.10 Aligned_cols=45 Identities=40% Similarity=0.461 Sum_probs=30.8
Q ss_pred HHHHHHcccCCCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026481 92 FKDLMAADWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEFIGIIMNI 148 (238)
Q Consensus 92 fKdLmA~sW~elp~svv~~ak~alSk~tdDkAGqeaL~nvfrAAeAvEeFgGiL~sL 148 (238)
+|||+|.. +.+...+|.+-|.-|||-.-- .||+|||..-.|+..+
T Consensus 6 lkdllahr-----enlmdsakrarsaitddmdpa-------daaqavenvksiisei 50 (141)
T 2r9i_A 6 LKDLLAHR-----ENLMDSAKRARSAITDDMDPA-------DAAQAVENVKSIISEI 50 (141)
T ss_dssp HHHHHHHH-----HHHHHHHHHHHHHCCTTSCHH-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-----HHHHHHHHHHHhhhccCCChH-------HHHHHHHHHHHHHHHH
Confidence 68888864 567778899999889886433 3566666655555443
No 34
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=29.84 E-value=2.7e+02 Score=23.95 Aligned_cols=48 Identities=17% Similarity=0.263 Sum_probs=30.0
Q ss_pred HHHHHHHHHH-HHHHHHHHHHhhhhhhccCC------------CCCCCcCCchHHHHHHHH
Q 026481 129 KNVFSAAEAV-EEFIGIIMNIKMEFDDEIGL------------SGENVKPLSNELSSAIRT 176 (238)
Q Consensus 129 ~nvfrAAeAv-EeFgGiL~sLrmeiDDl~Gl------------sGEnVkPLPd~~~~Al~t 176 (238)
+|+-.+|+++ ++|||.+-..+.+|-.|=|+ -|..+-|+..++.+.+..
T Consensus 96 ~~l~~~a~~~~~~~~g~~p~~~~~L~~l~GIG~~tA~~il~~~~~~~~~~vD~~v~Rv~~r 156 (369)
T 3fsp_A 96 RNLHAAVKEVKTRYGGKVPDDPDEFSRLKGVGPYTVGAVLSLAYGVPEPAVDGNVMRVLSR 156 (369)
T ss_dssp HHHHHHHHHHHHHHTTCCCCSHHHHHTSTTCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCChhHHHHHhcCCCcCHHHHHHHHHHHCCCCcccccHHHHHHHHH
Confidence 4566677765 45888776666666666554 266666666666555443
No 35
>1ufb_A TT1696 protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.90A {Thermus thermophilus} SCOP: a.24.16.3
Probab=29.55 E-value=51 Score=23.77 Aligned_cols=74 Identities=24% Similarity=0.303 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHH-HHHHHHHh-----hhhhhccCCCCCCCcCCchHHHHHHHHHHHHHH--HHHhhc---CCChhHHHH
Q 026481 129 KNVFSAAEAVEEF-IGIIMNIK-----MEFDDEIGLSGENVKPLSNELSSAIRTVYQRYA--TYLDAF---GPDESYLRK 197 (238)
Q Consensus 129 ~nvfrAAeAvEeF-gGiL~sLr-----meiDDl~GlsGEnVkPLPd~~~~Al~tay~rY~--~YLdsF---gpdE~yLrK 197 (238)
.-+|++=||||.. -++|..+- -.|..|+++-.+..+ +|+++.+.+....+-|+ .|=+.| .|.|.|=+.
T Consensus 29 ~a~f~a~qa~Ek~lKalL~~~g~~p~tH~l~~L~~~~~~~~~-~~~~~~~~~~~L~~~yi~~RYp~~~~~~~p~~~~t~e 107 (127)
T 1ufb_A 29 WACFAAQQAAEAALKGLHLARGQVAWGHSILDLLADLPEDVD-VPEDLVEAAKVLDKYYIPTRYPDAHPAGPAARHYTRL 107 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCSSCHHHHHHTSCTTSC-CCHHHHHHHHHHHTTSSTTTCGGGSSSSCGGGGCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHHhccC-CCHHHHHHHHHHHHHHhhhcCCCccccCCccccCCHH
Confidence 3479999999988 34554432 224555666554444 67788777777666343 344433 455667666
Q ss_pred HHHHhh
Q 026481 198 KVETEL 203 (238)
Q Consensus 198 KVE~EL 203 (238)
.+|.-+
T Consensus 108 ~a~~~l 113 (127)
T 1ufb_A 108 EAEEAL 113 (127)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666544
No 36
>1r42_A Angiotensin I converting enzyme 2; zinc metallopeptidase domain, Na open conformation, chloride ION binding site; HET: NAG; 2.20A {Homo sapiens} SCOP: d.92.1.5 PDB: 1r4l_A* 3sci_A 3scj_A 2ajf_A* 3kbh_A* 3d0g_A* 3d0h_A* 3d0i_A* 3sck_A 3scl_A
Probab=29.19 E-value=3.4e+02 Score=25.00 Aligned_cols=120 Identities=9% Similarity=0.138 Sum_probs=65.1
Q ss_pred CCCCHHHHHHHHHHHHcccCCCch-------hHHHHHHhhhcccC-----C---------ch-------hHHHHHHHHHH
Q 026481 82 VIRDPEIQRAFKDLMAADWGELPA-------SVIHDAKSALSRNN-----D---------DK-------AGQEVLKNVFS 133 (238)
Q Consensus 82 ~i~Dpei~~afKdLmA~sW~elp~-------svv~~ak~alSk~t-----d---------Dk-------AGqeaL~nvfr 133 (238)
.+.||+++..|+.|-...=..+++ .++++.++..++++ + |. ...+.++.+|+
T Consensus 87 ~l~~~~~~~~l~~l~~~g~~~l~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~l~~~p~l~~~~~~s~d~~~R~~aW~ 166 (615)
T 1r42_A 87 EIQNLTVKLQLQALQQNGSSVLSEDKSKRLNTILNTMSTIYSTGKVCNPDNPQECLLLEPGLNEIMANSLDYNERLWAWE 166 (615)
T ss_dssp TCCCHHHHHHHHHHTCCGGGGSCHHHHHHHHHHHHHHHHHHHHCEEEETTEEEEEEETTTBHHHHHHHCCCHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHhcCeeccCCCcccccccchhHHHHHHhCCCHHHHHHHHH
Confidence 678999888888664431011344 56666666665543 1 11 12234477888
Q ss_pred HHHH-H-HHHHH---HHHHHhhhhhhccCCCC-----CCC-cC--------CchHHHHHHHHHHHHHHHHHhhcCCChhH
Q 026481 134 AAEA-V-EEFIG---IIMNIKMEFDDEIGLSG-----ENV-KP--------LSNELSSAIRTVYQRYATYLDAFGPDESY 194 (238)
Q Consensus 134 AAeA-v-EeFgG---iL~sLrmeiDDl~GlsG-----EnV-kP--------LPd~~~~Al~tay~rY~~YLdsFgpdE~y 194 (238)
++.. + ++|-- -++.|+.++-.+.|-.+ .+. .| =|+++.+-++++++.-...+..+ -.|
T Consensus 167 ~~r~~~~~~~~~~l~~~v~l~~e~A~~~G~~~~~d~~~~~ye~~~~~r~dy~~~~~~~~ld~l~~~l~p~~~~L---~~y 243 (615)
T 1r42_A 167 SWRSEVGKQLRPLYEEYVVLKNEMARANHYEDYGDYWRGDYEVNGVDGYDYSRGQLIEDVEHTFEEIKPLYEHL---HAY 243 (615)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHTTCSSHHHHHHTTTCBCSCTTTCBCSHHHHHHHHHHHHHHHHHHHHH---HHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhhccccccccccCHHHHHHHHHHHHHHHHHHHHHH---HHH
Confidence 8652 2 22544 45566787888888765 111 12 12345666666665544433322 256
Q ss_pred HHHHHHHhhh
Q 026481 195 LRKKVETELG 204 (238)
Q Consensus 195 LrKKVE~ELG 204 (238)
+|+|+....|
T Consensus 244 vr~kl~~~yg 253 (615)
T 1r42_A 244 VRAKLMNAYP 253 (615)
T ss_dssp HHHHHHHHST
T ss_pred HHHHHHHHcC
Confidence 7767665546
No 37
>2w01_A Adenylate cyclase; guanylyl cyclase, class III nucleotidyl cyclase, lyase; 2.31A {Synechocystis SP}
Probab=28.31 E-value=42 Score=26.13 Aligned_cols=57 Identities=18% Similarity=0.164 Sum_probs=36.5
Q ss_pred CchhHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhhccCCCCCCCcCCchHHHHHHHHHHH
Q 026481 120 DDKAGQEVLKNVFSA-AEAVEEFIGIIMNIKMEFDDEIGLSGENVKPLSNELSSAIRTVYQ 179 (238)
Q Consensus 120 dDkAGqeaL~nvfrA-AeAvEeFgGiL~sLrmeiDDl~GlsGEnVkPLPd~~~~Al~tay~ 179 (238)
+...=.+.|...|+. .++++++||.++ |-.=|-++-..|-. .+.+++..+|++.+..
T Consensus 33 ~~~~~~~~l~~~~~~~~~~i~~~~G~v~--k~~GD~~~a~fg~p-~~~~~~a~~Av~~Al~ 90 (208)
T 2w01_A 33 NPEEVVKVLNIYFGKMADVITHHGGTID--EFMGDGILVLFGAP-TSQQDDALRAVACGVE 90 (208)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTCEEE--EEETTEEEEEESSS-SCCTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCEEE--EEEcCEEEEEECCC-CCChhHHHHHHHHHHH
Confidence 333444567777764 578999999653 23334455455543 4568899999998753
No 38
>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*
Probab=28.07 E-value=2.7e+02 Score=23.35 Aligned_cols=82 Identities=16% Similarity=0.024 Sum_probs=45.0
Q ss_pred CCCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCC----cCCchHHHHHHHH
Q 026481 101 GELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEFIGIIMNIKMEFDDEIGLSGENV----KPLSNELSSAIRT 176 (238)
Q Consensus 101 ~elp~svv~~ak~alSk~tdDkAGqeaL~nvfrAAeAvEeFgGiL~sLrmeiDDl~GlsGEnV----kPLPd~~~~Al~t 176 (238)
+=.|+..+.-.+.+.+ .|-..-++.-..+....+++...++....+|-.+. +.|+....+ .||+++..+.|++
T Consensus 200 n~~P~~~~~l~~a~~~--Gd~~~A~~l~~~l~~l~~~~~~~~~~~~~~K~al~-~~G~~~g~~R~Pl~~l~~~~~~~l~~ 276 (293)
T 1w3i_A 200 NYLPEVTVTIKKLAME--RKIDEALKLQFLHDEVIEASRIFGSLSSNYVLTKY-FQGYDLGYPRPPIFPLDDEEERQLIK 276 (293)
T ss_dssp GTCHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHSSCCBCCCTTSCCCCHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHH-HcCCCCCCcCCCCCCCCHHHHHHHHH
Confidence 3356555554444432 34333333333344444444444454556776554 677643333 3567888899999
Q ss_pred HHHHHHHHH
Q 026481 177 VYQRYATYL 185 (238)
Q Consensus 177 ay~rY~~YL 185 (238)
+.+++...+
T Consensus 277 ~l~~~~~~~ 285 (293)
T 1w3i_A 277 KVEGIRAKL 285 (293)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 988875443
No 39
>1t6c_A Exopolyphosphatase; alpha/beta protein, actin-like fold, hydrolase; 1.53A {Aquifex aeolicus} SCOP: c.55.1.8 c.55.1.8 PDB: 1t6d_A 2j4r_A*
Probab=26.99 E-value=71 Score=27.33 Aligned_cols=46 Identities=22% Similarity=0.374 Sum_probs=37.2
Q ss_pred CCCC---cCCchHHHHHHHHHHHHHHHHHhhcCCChh---------------HHHHHHHHhhhh
Q 026481 160 GENV---KPLSNELSSAIRTVYQRYATYLDAFGPDES---------------YLRKKVETELGS 205 (238)
Q Consensus 160 GEnV---kPLPd~~~~Al~tay~rY~~YLdsFgpdE~---------------yLrKKVE~ELGt 205 (238)
||.+ +.|+++-.+....+-++|..-++.||.++. .+-++|+.++|-
T Consensus 49 g~g~~~~g~ls~eai~r~~~~L~~f~~~~~~~~v~~i~~vATsA~R~A~N~~~fl~~v~~~~G~ 112 (315)
T 1t6c_A 49 GTKVKETGRLQEDRIEETIQVLKEYKKLIDEFKVERVKAVATEAIRRAKNAEEFLERVKREVGL 112 (315)
T ss_dssp TTTHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCSEEEEEECHHHHTSTTHHHHHHHHHHHTCC
T ss_pred CCCccccCCcCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEEcHHHHcCcCHHHHHHHHHHHHCC
Confidence 4554 789988888888899999999999999754 356788888874
No 40
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=26.72 E-value=25 Score=27.59 Aligned_cols=57 Identities=23% Similarity=0.315 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHH-HH---HhhhhhhccCCCCCCCcCCchHHHHHHHHHHHHHHHHHhhcCCChhHHHH
Q 026481 130 NVFSAAEAVEEFIGII-MN---IKMEFDDEIGLSGENVKPLSNELSSAIRTVYQRYATYLDAFGPDESYLRK 197 (238)
Q Consensus 130 nvfrAAeAvEeFgGiL-~s---LrmeiDDl~GlsGEnVkPLPd~~~~Al~tay~rY~~YLdsFgpdE~yLrK 197 (238)
|.|+.=.+|.++||.- |+ .=.+|-+-+|+... .......|++.|.| ||..| |.|+++
T Consensus 65 DL~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~-----~tsa~~~Lk~~Y~k---~L~~y---E~~~~g 125 (145)
T 2kk0_A 65 DLFMLYVLVTEKGGLVEVINKKLWREITKGLNLPTS-----ITSAAFTLRTQYMK---YLYPY---ECEKRG 125 (145)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTT-----STTHHHHHHHHHHH---HSSHH---HHHHTC
T ss_pred cHHHHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCC-----cCcHHHHHHHHHHH---HHHHH---HHHHhc
Confidence 7888888999999943 22 23456666776542 12345567776665 56666 345543
No 41
>3e59_A Pyoverdine biosynthesis protein PVCA; isonitrIle, paerucumarin, 2-isocyano-6,7-dihydroxycoum transferase; HET: PGE; 2.10A {Pseudomonas aeruginosa}
Probab=26.46 E-value=45 Score=30.30 Aligned_cols=26 Identities=4% Similarity=0.224 Sum_probs=19.9
Q ss_pred HHhhcCCChhHHHHHHHHhhhhhhhh
Q 026481 184 YLDAFGPDESYLRKKVETELGSKMIF 209 (238)
Q Consensus 184 YLdsFgpdE~yLrKKVE~ELGtkmI~ 209 (238)
-++.||+++.-||+++.++=.+++.|
T Consensus 174 L~~~~~~~~~~l~~~I~~d~~~~~tY 199 (330)
T 3e59_A 174 LIGGYAEPLESIRETLLASEEGLLLY 199 (330)
T ss_dssp HHHHHCCCHHHHHHHHTTSHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHccCHHHHHHH
Confidence 36789999999999888766665554
No 42
>3oyv_A Imelysin; outer membrane protein, extracellular active site, metal BIN protein, structural genomics; HET: MSE; 1.25A {Bacteroides ovatus atcc 8483} PDB: 3n8u_A*
Probab=26.10 E-value=3.5e+02 Score=24.11 Aligned_cols=100 Identities=18% Similarity=0.156 Sum_probs=65.1
Q ss_pred CCCHHHHHHHHHHHHcccCCCchhHHHHHHhhhccc----CCchhHHHHHHHHHHH--HHHHHHHHHHHHHHhhhhhhcc
Q 026481 83 IRDPEIQRAFKDLMAADWGELPASVIHDAKSALSRN----NDDKAGQEVLKNVFSA--AEAVEEFIGIIMNIKMEFDDEI 156 (238)
Q Consensus 83 i~Dpei~~afKdLmA~sW~elp~svv~~ak~alSk~----tdDkAGqeaL~nvfrA--AeAvEeFgGiL~sLrmeiDDl~ 156 (238)
|.||+++.+...|.+ |-+.+.++++..|..+ .++.+=+++|+|.-.- --+-+.|--.-.+|...++.+|
T Consensus 186 i~~~~~r~a~~a~~~-----L~~~l~~~~~~~l~~~~~~~~~~~~~~~vl~~~ad~vi~P~Y~~l~~~a~~L~~a~~a~~ 260 (361)
T 3oyv_A 186 IPSNETVAAMDACAE-----LESILKNDLKSYIANNSNNINTDAVLNPVVTQYVDAVVVPTYKSLKEKNDALYNAVIVLA 260 (361)
T ss_dssp TTSHHHHHHHHHHHH-----HHHHHHTHHHHHHHCGGGSCCSHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHH-----HHHHHHHHHHHHhhhccCCCcchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 458999988888764 5677777888888543 5666677788877653 4455677777788889999998
Q ss_pred CCCCCCCcCCchHHHHHHHHHHHH-HHHHHh----hcCCChhH
Q 026481 157 GLSGENVKPLSNELSSAIRTVYQR-YATYLD----AFGPDESY 194 (238)
Q Consensus 157 GlsGEnVkPLPd~~~~Al~tay~r-Y~~YLd----sFgpdE~y 194 (238)
. .| ......++|++|.. |..|-. .|||-+..
T Consensus 261 a------~P-t~~~L~aar~Aw~~Ar~~w~~~E~frfGP~~~~ 296 (361)
T 3oyv_A 261 D------NP-SNSAFETACDAWITAREPWEKSEAFLFGPVDEM 296 (361)
T ss_dssp H------SC-CHHHHHHHHHHHHHHHHHHHTTGGGCCGGGGST
T ss_pred h------CC-CHHHHHHHHHHHHHHHHHHHHhhhhcccccccc
Confidence 4 23 23344556665543 222322 37776653
No 43
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=25.13 E-value=30 Score=25.62 Aligned_cols=35 Identities=23% Similarity=0.642 Sum_probs=28.2
Q ss_pred CCCHHHHHHHHHHHHcccCC---CchhHHHHHHhhhccc
Q 026481 83 IRDPEIQRAFKDLMAADWGE---LPASVIHDAKSALSRN 118 (238)
Q Consensus 83 i~Dpei~~afKdLmA~sW~e---lp~svv~~ak~alSk~ 118 (238)
+.||+.++.+..|+.+ |.+ .|+++++..+.+|+++
T Consensus 94 ~~~~~~~~kl~~ll~i-W~~r~vf~~~~i~~L~~~L~~s 131 (132)
T 4flb_A 94 VKDPSVSKSVERIFKI-WEDRNVYPEEMIVALREALSTT 131 (132)
T ss_dssp TCSTTTHHHHHHHHHH-HHHHTSSCHHHHHHHHHHHTSC
T ss_pred hCCHHHHHHHHHHHHH-hccCCCcCHHHHHHHHHHHhcc
Confidence 4678888888888875 654 8999999999988763
No 44
>1cfz_A Hydrogenase 2 maturation protease; metzincins, nickel; 2.20A {Escherichia coli} SCOP: c.56.1.1 PDB: 2kml_A
Probab=24.37 E-value=51 Score=25.68 Aligned_cols=35 Identities=17% Similarity=0.283 Sum_probs=31.2
Q ss_pred ccCCCCCCCc---CCchHHHHHHHHHHHHHHHHHhhcC
Q 026481 155 EIGLSGENVK---PLSNELSSAIRTVYQRYATYLDAFG 189 (238)
Q Consensus 155 l~GlsGEnVk---PLPd~~~~Al~tay~rY~~YLdsFg 189 (238)
++|+.++++. +|.+..++|+..+.+.-.+.|..+|
T Consensus 116 ligi~p~~~~~g~~LS~~v~~av~~a~~~i~~~l~~~g 153 (162)
T 1cfz_A 116 LVGVIPESLEPHIGLTPTVEAMIEPALEQVLAALRESG 153 (162)
T ss_dssp EEEECCSCCCSBSSCCHHHHTTHHHHHHHHHHHHHTTT
T ss_pred EEEEEEeEcCCCCCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 6788888874 5899999999999999999999998
No 45
>3n2w_A Beta-peptidyl aminopeptidase; NTN hydrolase, alpha-beta-BETA-alpha sandwich, beta-aminopep beta-peptide, hydrolase; HET: GOL; 1.45A {Sphingosinicella xenopeptidilytica} SCOP: d.154.1.0 PDB: 3n33_A* 3ndv_A* 3nfb_A* 3n5i_A
Probab=24.25 E-value=52 Score=30.10 Aligned_cols=47 Identities=13% Similarity=0.320 Sum_probs=35.9
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHhhhhhhccCCCCCCCcCCchHHHHHHHHHHH
Q 026481 127 VLKNVFSA-AEAVEEFIGIIMNIKMEFDDEIGLSGENVKPLSNELSSAIRTVYQ 179 (238)
Q Consensus 127 aL~nvfrA-AeAvEeFgGiL~sLrmeiDDl~GlsGEnVkPLPd~~~~Al~tay~ 179 (238)
.|.-+|+| |||+||- |+.+|.++ +...|..|.-+.-||- +.|+.+.+
T Consensus 320 ~l~~l~~aAaea~eeA--I~nAv~~A-~~~~G~~g~~~~al~~---~~~~~~~~ 367 (373)
T 3n2w_A 320 TMNALFRGVVQATEEA--LVNQLVAS-ETMTGANNAKVYGIPH---DQLARIMK 367 (373)
T ss_dssp HHHHHHHHHHHHHHHH--HHHHHHHC-CCEECBTTEEECCCCH---HHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH--HHHHHHhc-cCccCCCCcEEeCCCH---HHHHHHHh
Confidence 46778875 5799997 99999887 6788999999999995 33444444
No 46
>1h6g_A Alpha-1 catenin; adhesion modulation, cytoskeleton; 2.2A {Homo sapiens} SCOP: a.24.9.1 a.24.9.1 PDB: 1l7c_A
Probab=23.81 E-value=91 Score=26.19 Aligned_cols=49 Identities=6% Similarity=-0.014 Sum_probs=30.6
Q ss_pred CCCCHHHHHHHHHHHHcccCCCchhHHHHHHhh---hcccCCchhHHHHHHH
Q 026481 82 VIRDPEIQRAFKDLMAADWGELPASVIHDAKSA---LSRNNDDKAGQEVLKN 130 (238)
Q Consensus 82 ~i~Dpei~~afKdLmA~sW~elp~svv~~ak~a---lSk~tdDkAGqeaL~n 130 (238)
.-.||+..+-+++-...==+.+.+.++++||.+ +++|.+|...|..+.+
T Consensus 186 ~~ed~~~~~~v~~a~~~L~~a~~p~mv~~ak~~~~~~a~np~d~~~~~~~~~ 237 (256)
T 1h6g_A 186 NYEPGVYTEKVLEATKLLSNTVMPRFTEQVEAAVEALSSDPAQPMDENEFID 237 (256)
T ss_dssp TSCSSHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSSCCCCCHHHHHH
T ss_pred cCCChHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhcCCCCHHHHHHHHH
Confidence 445776655554431111112566799999998 7888888776766654
No 47
>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*
Probab=23.69 E-value=82 Score=24.89 Aligned_cols=29 Identities=14% Similarity=0.048 Sum_probs=22.1
Q ss_pred hccCCCCCCCcCCchHHHHHHHHHHHHHH
Q 026481 154 DEIGLSGENVKPLSNELSSAIRTVYQRYA 182 (238)
Q Consensus 154 Dl~GlsGEnVkPLPd~~~~Al~tay~rY~ 182 (238)
|.+-+..-..+|.|+.+.+|+..+.+++.
T Consensus 16 ~~i~l~~~~~~~~~~~v~~a~~~~~~~~~ 44 (390)
T 1elu_A 16 NKTYFNFGGQGILPTVALEAITAMYGYLQ 44 (390)
T ss_dssp TSEECCTTTCCCCCHHHHHHHHHHHHHHH
T ss_pred CeEEecCCccCCCCHHHHHHHHHHHHHHh
Confidence 55556555578999999999998887764
No 48
>1y6d_A Phosphorelay protein LUXU; phosphotransferase, four-helix bundle, quorum sensing; NMR {Vibrio harveyi} SCOP: a.24.10.5
Probab=23.20 E-value=1.5e+02 Score=21.83 Aligned_cols=104 Identities=11% Similarity=0.142 Sum_probs=55.0
Q ss_pred CCCCCCHHHHHHHHHHHHcccCCCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHHHHH-----HHHHHhhhhhh
Q 026481 80 MPVIRDPEIQRAFKDLMAADWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEFIG-----IIMNIKMEFDD 154 (238)
Q Consensus 80 lP~i~Dpei~~afKdLmA~sW~elp~svv~~ak~alSk~tdDkAGqeaL~nvfrAAeAvEeFgG-----iL~sLrmeiDD 154 (238)
+|.+....+..-..++-...-.++=+-.+.++..-|..-.. -..++.+..+||+|-.+.--.| -|..+=.++.+
T Consensus 9 ~~~~d~~~l~~L~~~~g~~~~~e~~~~F~~e~~e~l~~L~~-a~~~~~~~~i~r~aH~LKGsAa~~Ga~~l~~~~~~lE~ 87 (120)
T 1y6d_A 9 TDVLNQQKIEELSAEIGSDNVPVLLDIFLGEMDSYIGTLTE-LQGSEQLLYLKEISHALKSSAASFGADRLCERAIAIDK 87 (120)
T ss_dssp CTTTTTTHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHTTT-TSSHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred CccccHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHc-ccccchHHHHHHHHHHHhhhHHHhCHHHHHHHHHHHHH
Confidence 56665554443322333322333334445566655554222 2345667789999887754443 44555555655
Q ss_pred ccCCCC--CCCcCCchHHHHHHHHHHHHHHHHH
Q 026481 155 EIGLSG--ENVKPLSNELSSAIRTVYQRYATYL 185 (238)
Q Consensus 155 l~GlsG--EnVkPLPd~~~~Al~tay~rY~~YL 185 (238)
++ -.| +++.++-+.+.+.+..+.+.|..++
T Consensus 88 ~~-r~g~~~~~~~~~~~l~~~l~~~~d~l~~~~ 119 (120)
T 1y6d_A 88 KA-KANQLQEQGMETSEMLALLHITRDAYRSWT 119 (120)
T ss_dssp HH-HHHHHCTTTSTTTTTTHHHHHHHHHHHHHC
T ss_pred HH-hCCChhhhHhhHHHHHHHHHHHHHHHHHHh
Confidence 52 122 4445555666666666666666554
No 49
>3iwj_A Putative aminoaldehyde dehydrogenase; rossmann fold, dimer, betaine aldehyde dehydrogenase, NAD, oxidoreductase; HET: NAD; 2.15A {Pisum sativum} SCOP: c.82.1.0 PDB: 3iwk_A* 4a0m_A*
Probab=23.05 E-value=1.4e+02 Score=27.04 Aligned_cols=77 Identities=12% Similarity=0.252 Sum_probs=55.3
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHc-------ccCCCchh----HHHHHHhhhcccCCchhH----------HHHHHHHHH
Q 026481 75 EDVAHMPVIRDPEIQRAFKDLMAA-------DWGELPAS----VIHDAKSALSRNNDDKAG----------QEVLKNVFS 133 (238)
Q Consensus 75 ~d~~hlP~i~Dpei~~afKdLmA~-------sW~elp~s----vv~~ak~alSk~tdDkAG----------qeaL~nvfr 133 (238)
+-+.++|..+..++..|++..-++ .|..+|.. ++..+...|..+.|+.+- .|+..++.+
T Consensus 34 ~~i~~~~~~~~~~v~~av~~A~~A~~~~~~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ea~~ev~~ 113 (503)
T 3iwj_A 34 NIIGDIPAATKEDVDVAVAAAKTALTRNKGADWATASGAVRARYLRAIAAKVTEKKPELAKLESIDCGKPLDEAAWDIDD 113 (503)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHHHHHGGGGTTTTSSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred CEEEEEcCCCHHHHHHHHHHHHHHhhhcCCcchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 345667888888898888877664 79999864 556667777777666553 355567888
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 026481 134 AAEAVEEFIGIIMNIKME 151 (238)
Q Consensus 134 AAeAvEeFgGiL~sLrme 151 (238)
+++.++.|.+.+..+.-+
T Consensus 114 ~~~~~~~~a~~~~~~~~~ 131 (503)
T 3iwj_A 114 VAGCFEYYADLAEKLDAR 131 (503)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCC
Confidence 888888888877766544
No 50
>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}
Probab=22.77 E-value=42 Score=26.70 Aligned_cols=49 Identities=16% Similarity=0.122 Sum_probs=32.8
Q ss_pred hhccCCC-CCCCcCCchHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHhhh
Q 026481 153 DDEIGLS-GENVKPLSNELSSAIRTVYQRYATYLDAFGPDESYLRKKVETELG 204 (238)
Q Consensus 153 DDl~Gls-GEnVkPLPd~~~~Al~tay~rY~~YLdsFgpdE~yLrKKVE~ELG 204 (238)
.|++-++ |+|.-|.|+.+.+|+..+.+.+..|-+..+ .-||+++-.-+|
T Consensus 30 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~~~---~~lr~~la~~~~ 79 (365)
T 3get_A 30 KEVIKLASNENPFGTPPKAIECLRQNANKAHLYPDDSM---IELKSTLAQKYK 79 (365)
T ss_dssp SCCEECSSCCCTTCSCHHHHHHHHHHGGGTTSCCCTTC---HHHHHHHHHHHT
T ss_pred CceEEecCCCCCCCCCHHHHHHHHHHHHhhccCCCCCh---HHHHHHHHHHhC
Confidence 5677777 888888899999999887765544433322 346666655443
No 51
>3e4x_A APC36150; structural genomics, DINB superfamily, PSI-2, protein structure initiative; 2.51A {Geobacillus stearothermophilus} PDB: 3gor_A
Probab=22.72 E-value=1.3e+02 Score=21.17 Aligned_cols=28 Identities=11% Similarity=0.229 Sum_probs=23.3
Q ss_pred CCchHHHHHHHHHHHHHHHHHhhcCCCh
Q 026481 165 PLSNELSSAIRTVYQRYATYLDAFGPDE 192 (238)
Q Consensus 165 PLPd~~~~Al~tay~rY~~YLdsFgpdE 192 (238)
+=.+++...++.+.+++.+||+++-+++
T Consensus 76 ~s~~~l~~~~~~~~~~~~~~l~~l~~~~ 103 (157)
T 3e4x_A 76 EPETNLAKLAETYTEKTRQLIESMSDDD 103 (157)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHTCCTTG
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 3457788999999999999999987653
No 52
>1syy_A Ribonucleoside-diphosphate reductase beta chain; DIIRON, oxygen activation, iron coupled radical, immune EVAS replication, oxidoreductase; 1.70A {Chlamydia trachomatis} SCOP: a.25.1.2 PDB: 4d8g_A 4d8f_A 2ani_A
Probab=22.21 E-value=3.8e+02 Score=23.13 Aligned_cols=101 Identities=15% Similarity=0.135 Sum_probs=65.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHcccCCCchhHHHHHHhhhc-ccCCchhHHHHHHHHHHHHHHHHHHHH-HH-HHHhhhhhh
Q 026481 78 AHMPVIRDPEIQRAFKDLMAADWGELPASVIHDAKSALS-RNNDDKAGQEVLKNVFSAAEAVEEFIG-II-MNIKMEFDD 154 (238)
Q Consensus 78 ~hlP~i~Dpei~~afKdLmA~sW~elp~svv~~ak~alS-k~tdDkAGqeaL~nvfrAAeAvEeFgG-iL-~sLrmeiDD 154 (238)
-.+-.|+-|++.+..|...+.-|..=.=.+-+|.+.--+ +-+| .-|.++++++..=-+.+..=| .+ ..|...+
T Consensus 29 ~~~~p~ky~~~~~ly~~~~~~fW~peEIdls~D~~dw~~~~Lt~--~Er~~~~~~l~~~~~~D~iv~~~~~~~l~~~v-- 104 (346)
T 1syy_A 29 NQLVPIKYKWAWEHYLNGCANNWLPTEIPMGKDIELWKSDRLSE--DERRVILLNLGFFSTAESLVGNNIVLAIFKHV-- 104 (346)
T ss_dssp TCCCSCCCHHHHHHHHHHHHTCCCGGGSCCHHHHHHHHSSCSCH--HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHC--
T ss_pred ceecCCccHHHHHHHHHHHHcCCcHhhcchhhhHHHHhhccCCH--HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhC--
Confidence 346789999999999999999997544445667664432 3233 458999998876555444333 11 1222222
Q ss_pred ccCCCCCCCcCCchH-----HHHHHHHHH-HHHHHHHhhcCCCh
Q 026481 155 EIGLSGENVKPLSNE-----LSSAIRTVY-QRYATYLDAFGPDE 192 (238)
Q Consensus 155 l~GlsGEnVkPLPd~-----~~~Al~tay-~rY~~YLdsFgpdE 192 (238)
+.|+. .+-+.+++| +=|..+|++++.++
T Consensus 105 ----------~~~E~~~~l~~q~~~EaiHs~sYs~il~tl~~~~ 138 (346)
T 1syy_A 105 ----------TNPEARQYLLRQAFEEAVHTHTFLYICESLGLDE 138 (346)
T ss_dssp ----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCH
T ss_pred ----------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
Confidence 23432 235667778 45899999999986
No 53
>1b65_A DMPA, protein (aminopeptidase); hydrolase, peptide degradation, NTN hydrolase; 1.82A {Ochrobactrum anthropi} SCOP: d.154.1.1
Probab=22.18 E-value=82 Score=28.94 Aligned_cols=48 Identities=25% Similarity=0.424 Sum_probs=35.3
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHhhhhhhccCC--CCCCCcCCchHHHHHHHHHHHHH
Q 026481 128 LKNVFSA-AEAVEEFIGIIMNIKMEFDDEIGL--SGENVKPLSNELSSAIRTVYQRY 181 (238)
Q Consensus 128 L~nvfrA-AeAvEeFgGiL~sLrmeiDDl~Gl--sGEnVkPLPd~~~~Al~tay~rY 181 (238)
|.-+|+| |||+||- |+.+|.++ ++..|+ .|.-+.-||+ +-|+...++|
T Consensus 321 l~~l~~aAaeaveeA--I~nAv~~A-~~~~g~~~~g~~~~al~~---~~~~~~~~~~ 371 (375)
T 1b65_A 321 LDTVYLAAVDSVEEA--VVNAMIAA-EDMGGTPFDRLLVQAIDH---ERLRAVLRQY 371 (375)
T ss_dssp GHHHHHHHHHHHHHH--HHHHHHHC-CCEECSTTCSCEECCCCH---HHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH--HHHHHHhc-cCccCccCCCeEEecCCH---HHHHHHHHHh
Confidence 5567764 6888885 78888876 556788 8999999998 3366665544
No 54
>1k0w_A L-ribulose 5 phosphate 4-epimerase; aldolase, isomerase; 2.10A {Escherichia coli} SCOP: c.74.1.1 PDB: 1jdi_A
Probab=21.23 E-value=1.8e+02 Score=23.41 Aligned_cols=44 Identities=9% Similarity=-0.016 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcCCchHHHHHHHHHH
Q 026481 127 VLKNVFSAAEAVEEFIGIIMNIKMEFDDEIGLSGENVKPLSNELSSAIRTVY 178 (238)
Q Consensus 127 aL~nvfrAAeAvEeFgGiL~sLrmeiDDl~GlsGEnVkPLPd~~~~Al~tay 178 (238)
-+..+|..++.+|+.--+....+. .|.++.|||++..+.+...+
T Consensus 179 ~~~eA~~~~~~lE~~a~~~~~a~~--------~g~~~~~l~~~~~~~~~~~~ 222 (231)
T 1k0w_A 179 NAEDAVHNAIVLEEVAYMGIFCRQ--------LAPQLPDMQQTLLNKHYLRK 222 (231)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHH--------HCTTCCCCCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH--------cCCCCCCCCHHHHHHHHHHH
Confidence 366777888888876554332221 25678899998776665444
No 55
>2zzv_A ABC transporter, solute-binding protein; periplasmic substrate binding protein, calcium, lactate, trap transporter, transport protein; 1.40A {Thermus thermophilus} PDB: 2zzw_A 2zzx_A
Probab=20.80 E-value=32 Score=28.98 Aligned_cols=18 Identities=39% Similarity=0.396 Sum_probs=9.6
Q ss_pred CCCCcCCchHHHHHHHHH
Q 026481 160 GENVKPLSNELSSAIRTV 177 (238)
Q Consensus 160 GEnVkPLPd~~~~Al~ta 177 (238)
|=.|-++|++-..+++.+
T Consensus 302 G~~v~~~~~~~~~~~~~~ 319 (361)
T 2zzv_A 302 GVEVIRLSNEDVRKFRRL 319 (361)
T ss_dssp TCEEEECCHHHHHHHHHH
T ss_pred CCEEEECCHHHHHHHHHH
Confidence 334666776654444443
No 56
>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*
Probab=20.66 E-value=2.4e+02 Score=23.34 Aligned_cols=55 Identities=15% Similarity=0.214 Sum_probs=37.8
Q ss_pred CCHHHHHHHHHHHHccc-CCCchhHHHHHHhhhcccC--Cch-----hHHHHHHHHHHHHHHH
Q 026481 84 RDPEIQRAFKDLMAADW-GELPASVIHDAKSALSRNN--DDK-----AGQEVLKNVFSAAEAV 138 (238)
Q Consensus 84 ~Dpei~~afKdLmA~sW-~elp~svv~~ak~alSk~t--dDk-----AGqeaL~nvfrAAeAv 138 (238)
.+|+|.+|+++-+...+ ...+.....+..+.|.+-. .+. -|.||+..++++|.+.
T Consensus 73 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~v~~~~sgseA~~~al~~ar~~ 135 (434)
T 2epj_A 73 KHPRVLEAVEEALARGWLYGAPGEAEVLLAEKILGYVKRGGMIRFVNSGTEATMTAIRLARGY 135 (434)
T ss_dssp TCHHHHHHHHHHHHTCSCCSSCCHHHHHHHHHHHHHHCTTCEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHHHHHHh
Confidence 68999999999887643 2335555555555554422 222 3999999999998764
No 57
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1
Probab=20.50 E-value=2.7e+02 Score=22.17 Aligned_cols=87 Identities=11% Similarity=0.135 Sum_probs=46.6
Q ss_pred CCCCHHHHHHHHHHHHcccCCCchhHHH----HHHhhhcccCCchhHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhhcc
Q 026481 82 VIRDPEIQRAFKDLMAADWGELPASVIH----DAKSALSRNNDDKAGQEVLKNVFSAAEAVE-EFIGIIMNIKMEFDDEI 156 (238)
Q Consensus 82 ~i~Dpei~~afKdLmA~sW~elp~svv~----~ak~alSk~tdDkAGqeaL~nvfrAAeAvE-eFgGiL~sLrmeiDDl~ 156 (238)
.++|..+.+++..|+.. |. =|+.+.+ +++.++...+= ...--+++-.+|+++. +|+|.+...+.+|--|=
T Consensus 41 qts~~~v~~~~~~l~~~-fp-t~~~la~a~~~~l~~~i~~~G~---~~~KA~~l~~~a~~~~~~~~g~~~~~~~~L~~l~ 115 (211)
T 2abk_A 41 QATDVSVNKATAKLYPV-AN-TPAAMLELGVEGVKTYIKTIGL---YNSKAENIIKTCRILLEQHNGEVPEDRAALEALP 115 (211)
T ss_dssp TSCHHHHHHHHHHHTTT-CC-SHHHHHHHHHHHHHHHHTTSTT---HHHHHHHHHHHHHHHHHHTTTSCCSCHHHHHHST
T ss_pred CCCHHHHHHHHHHHHHH-CC-CHHHHHCCCHHHHHHHHHHcCC---ChHHHHHHHHHHHHHHHHcCCCchHHHHHHHhCC
Confidence 35677788888888654 21 1333333 33333443221 1122456677777764 57886655555555555
Q ss_pred CC------------CCCCCcCCchHHHHH
Q 026481 157 GL------------SGENVKPLSNELSSA 173 (238)
Q Consensus 157 Gl------------sGEnVkPLPd~~~~A 173 (238)
|+ -|..+-|..+++.+.
T Consensus 116 GIG~~tA~~il~~~~~~~~~~vD~~v~Rv 144 (211)
T 2abk_A 116 GVGRKTANVVLNTAFGWPTIAVDTHIFRV 144 (211)
T ss_dssp TCCHHHHHHHHHHHHCCCCCCCCHHHHHH
T ss_pred CCChHHHHHHHHHHCCCCcCCcCHHHHHH
Confidence 54 256666665554443
No 58
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=20.31 E-value=4.2e+02 Score=22.92 Aligned_cols=73 Identities=19% Similarity=0.233 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcCCchHHHHHHHHHHHHHHH-------HHhhc-------CC
Q 026481 125 QEVLKNVFSAAEAVEEFIGIIMNIKMEFDDEIGLSGENVKPLSNELSSAIRTVYQRYAT-------YLDAF-------GP 190 (238)
Q Consensus 125 qeaL~nvfrAAeAvEeFgGiL~sLrmeiDDl~GlsGEnVkPLPd~~~~Al~tay~rY~~-------YLdsF-------gp 190 (238)
+|-+-..-+.||.+|.|.-++..+|.-+. + ++ ...|..+-.|-|--+|+..+. -+.+. |.
T Consensus 8 re~~v~~AkLaeqaeRyddm~~~mk~v~~----~-~~-~~eLt~EERnLLSvaYKNvig~rR~swRiissieqke~~k~~ 81 (260)
T 1o9d_A 8 REENVYMAKLAEQAERYEEMVEFMEKVSN----S-LG-SEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGN 81 (260)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH----T-CS-SSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHc----c-CC-CCCCCHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhccCc
Confidence 45555555668999999999998887554 1 21 125888888888888875542 12222 33
Q ss_pred ChhH-----HHHHHHHhh
Q 026481 191 DESY-----LRKKVETEL 203 (238)
Q Consensus 191 dE~y-----LrKKVE~EL 203 (238)
+++- .|+|||.||
T Consensus 82 ~~~~~~i~~yr~kie~EL 99 (260)
T 1o9d_A 82 EEHVNSIREYRSKIENEL 99 (260)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 2221 489999999
No 59
>2bsq_E FITA, trafficking protein A; transcription, transcription regulation complex, PIN domain, ribbon-helix-helix, DNA binding; HET: 5IU; 3.0A {Neisseria gonorrhoeae} SCOP: a.43.1.8 PDB: 2h1o_E*
Probab=20.09 E-value=1.1e+02 Score=22.13 Aligned_cols=36 Identities=11% Similarity=-0.074 Sum_probs=25.5
Q ss_pred CHHHHHHHHHHHHcccCCCchhHHHHHHhhhcccCC
Q 026481 85 DPEIQRAFKDLMAADWGELPASVIHDAKSALSRNND 120 (238)
Q Consensus 85 Dpei~~afKdLmA~sW~elp~svv~~ak~alSk~td 120 (238)
|+++..++|..-+.+=--+.+.+.....+++...+.
T Consensus 9 pd~~~~~Lk~rAa~~GrSle~e~r~iL~~a~~~~~~ 44 (77)
T 2bsq_E 9 SEATHNAIKFRARAAGRSTEAEIRLILDNIAKAQQT 44 (77)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCccc
Confidence 567888888887777777777777777777765433
Done!