Query 026482
Match_columns 238
No_of_seqs 123 out of 1134
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 08:35:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026482.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026482hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0406 Glutathione S-transfer 100.0 8.4E-37 1.8E-41 239.0 21.7 205 25-236 6-223 (231)
2 PRK09481 sspA stringent starva 100.0 1E-34 2.2E-39 231.3 20.0 183 27-220 9-200 (211)
3 TIGR00862 O-ClC intracellular 100.0 1.5E-32 3.3E-37 220.1 19.0 198 34-236 16-232 (236)
4 PLN02473 glutathione S-transfe 100.0 7.4E-33 1.6E-37 221.0 16.8 185 27-220 1-209 (214)
5 PRK15113 glutathione S-transfe 100.0 2.4E-31 5.1E-36 212.4 18.8 181 27-220 4-206 (214)
6 PRK10357 putative glutathione 100.0 6.9E-31 1.5E-35 207.9 18.2 184 29-224 1-200 (202)
7 PLN02817 glutathione dehydroge 100.0 1.9E-30 4.2E-35 212.2 19.7 190 35-235 71-262 (265)
8 PRK10542 glutathionine S-trans 100.0 5.5E-31 1.2E-35 208.2 15.6 181 29-220 1-195 (201)
9 TIGR01262 maiA maleylacetoacet 100.0 1.1E-30 2.3E-35 207.9 17.1 182 30-221 1-203 (210)
10 PLN02378 glutathione S-transfe 100.0 2.6E-30 5.5E-35 206.2 19.2 189 34-233 17-208 (213)
11 PLN02395 glutathione S-transfe 100.0 1.8E-30 3.9E-35 207.4 16.9 183 28-220 2-208 (215)
12 PRK13972 GSH-dependent disulfi 100.0 2.5E-30 5.4E-35 206.6 16.8 177 29-220 2-203 (215)
13 COG0625 Gst Glutathione S-tran 100.0 6.2E-30 1.3E-34 203.8 16.5 177 29-217 1-199 (211)
14 PRK11752 putative S-transferas 100.0 8.7E-29 1.9E-33 203.2 19.6 184 28-220 44-256 (264)
15 KOG0868 Glutathione S-transfer 100.0 5.6E-29 1.2E-33 183.9 13.6 187 26-224 3-207 (217)
16 PTZ00057 glutathione s-transfe 100.0 1.1E-27 2.4E-32 189.9 17.6 182 27-220 3-197 (205)
17 PRK10387 glutaredoxin 2; Provi 100.0 1E-27 2.2E-32 190.8 14.7 170 29-216 1-207 (210)
18 KOG0867 Glutathione S-transfer 99.9 4.1E-26 8.9E-31 183.0 16.3 185 27-220 1-207 (226)
19 TIGR02182 GRXB Glutaredoxin, G 99.9 4E-26 8.6E-31 181.5 14.7 169 30-216 1-206 (209)
20 KOG1695 Glutathione S-transfer 99.9 2.2E-24 4.7E-29 168.1 17.6 183 27-220 2-198 (206)
21 KOG1422 Intracellular Cl- chan 99.9 1.3E-23 2.8E-28 159.8 17.2 195 36-235 20-216 (221)
22 KOG4420 Uncharacterized conser 99.9 2.4E-24 5.2E-29 168.3 12.4 199 28-233 26-296 (325)
23 PLN02907 glutamate-tRNA ligase 99.9 5.7E-21 1.2E-25 174.2 17.8 155 29-215 3-159 (722)
24 cd03055 GST_N_Omega GST_N fami 99.8 3.1E-19 6.6E-24 122.7 10.2 88 9-101 1-89 (89)
25 KOG2903 Predicted glutathione 99.8 2.4E-19 5.2E-24 140.5 10.3 212 1-221 16-287 (319)
26 COG0435 ECM4 Predicted glutath 99.8 5.8E-19 1.3E-23 139.6 10.4 218 1-226 26-290 (324)
27 PF13417 GST_N_3: Glutathione 99.8 4.4E-19 9.5E-24 118.0 8.0 74 31-107 1-74 (75)
28 cd03061 GST_N_CLIC GST_N famil 99.8 3.9E-18 8.5E-23 116.2 8.4 70 35-107 20-89 (91)
29 cd03059 GST_N_SspA GST_N famil 99.7 9.1E-18 2E-22 110.9 8.9 73 29-104 1-73 (73)
30 cd03052 GST_N_GDAP1 GST_N fami 99.7 9E-18 2E-22 110.9 8.0 70 29-101 1-73 (73)
31 cd03058 GST_N_Tau GST_N family 99.7 1.5E-17 3.3E-22 110.2 8.7 73 29-104 1-74 (74)
32 cd03060 GST_N_Omega_like GST_N 99.7 4.3E-17 9.3E-22 107.2 8.3 69 29-100 1-70 (71)
33 cd03045 GST_N_Delta_Epsilon GS 99.7 6.4E-17 1.4E-21 107.1 8.5 71 29-102 1-74 (74)
34 cd03053 GST_N_Phi GST_N family 99.7 8.4E-17 1.8E-21 107.2 9.0 73 28-103 1-76 (76)
35 cd03041 GST_N_2GST_N GST_N fam 99.7 6.4E-17 1.4E-21 108.0 8.4 73 29-104 2-77 (77)
36 KOG4244 Failed axon connection 99.7 2.2E-16 4.7E-21 124.6 11.7 175 23-212 40-272 (281)
37 cd03050 GST_N_Theta GST_N fami 99.7 1.9E-16 4.1E-21 105.5 8.8 73 29-104 1-76 (76)
38 cd03076 GST_N_Pi GST_N family, 99.7 1.3E-16 2.7E-21 105.5 7.7 72 29-103 2-73 (73)
39 cd03203 GST_C_Lambda GST_C fam 99.7 7.5E-16 1.6E-20 111.8 12.1 119 113-233 1-120 (120)
40 cd03056 GST_N_4 GST_N family, 99.7 2E-16 4.3E-21 104.4 8.1 70 29-101 1-73 (73)
41 cd03047 GST_N_2 GST_N family, 99.7 2.3E-16 4.9E-21 104.3 8.1 72 29-101 1-73 (73)
42 cd03044 GST_N_EF1Bgamma GST_N 99.7 1.7E-16 3.7E-21 105.4 7.4 70 30-102 2-74 (75)
43 PF13409 GST_N_2: Glutathione 99.7 1.9E-16 4.2E-21 103.7 7.3 67 36-103 1-70 (70)
44 cd03037 GST_N_GRX2 GST_N famil 99.7 2.6E-16 5.6E-21 103.4 7.7 70 29-102 1-71 (71)
45 cd03048 GST_N_Ure2p_like GST_N 99.7 3.8E-16 8.1E-21 105.4 8.7 73 29-105 2-80 (81)
46 cd03039 GST_N_Sigma_like GST_N 99.7 3E-16 6.5E-21 103.4 7.5 71 29-102 1-72 (72)
47 cd03051 GST_N_GTT2_like GST_N 99.7 4.3E-16 9.4E-21 103.0 7.9 72 29-101 1-74 (74)
48 cd03049 GST_N_3 GST_N family, 99.7 4.2E-16 9.1E-21 103.0 7.7 70 29-101 1-73 (73)
49 cd03046 GST_N_GTT1_like GST_N 99.7 8.2E-16 1.8E-20 102.3 8.6 73 29-105 1-76 (76)
50 KOG3029 Glutathione S-transfer 99.6 3.7E-15 7.9E-20 118.4 13.3 174 28-212 90-354 (370)
51 COG2999 GrxB Glutaredoxin 2 [P 99.6 5.8E-15 1.3E-19 109.7 11.9 171 29-216 1-207 (215)
52 cd03040 GST_N_mPGES2 GST_N fam 99.6 1.4E-15 3.1E-20 101.5 7.9 72 28-104 1-76 (77)
53 cd03057 GST_N_Beta GST_N famil 99.6 2E-15 4.2E-20 100.8 8.3 73 29-105 1-77 (77)
54 cd03042 GST_N_Zeta GST_N famil 99.6 1.9E-15 4.2E-20 99.6 7.9 70 29-101 1-73 (73)
55 cd03075 GST_N_Mu GST_N family, 99.6 3.3E-15 7.2E-20 100.8 8.1 74 29-104 1-82 (82)
56 cd03198 GST_C_CLIC GST_C famil 99.6 7.5E-15 1.6E-19 107.4 10.2 94 139-234 27-134 (134)
57 cd03080 GST_N_Metaxin_like GST 99.6 5.9E-15 1.3E-19 98.0 8.5 67 29-105 2-75 (75)
58 cd03077 GST_N_Alpha GST_N fami 99.6 9.6E-15 2.1E-19 97.9 8.8 74 28-105 1-77 (79)
59 cd03184 GST_C_Omega GST_C fami 99.6 2E-14 4.3E-19 104.8 11.0 117 116-235 2-124 (124)
60 cd03038 GST_N_etherase_LigE GS 99.6 9.9E-15 2.1E-19 99.1 7.8 67 35-105 14-84 (84)
61 PF02798 GST_N: Glutathione S- 99.6 1.7E-14 3.8E-19 95.9 8.8 71 29-102 1-76 (76)
62 cd03043 GST_N_1 GST_N family, 99.6 1.5E-14 3.3E-19 95.4 8.2 66 33-101 6-73 (73)
63 cd03190 GST_C_ECM4_like GST_C 99.6 2.1E-14 4.5E-19 107.3 9.3 117 115-236 3-130 (142)
64 cd00570 GST_N_family Glutathio 99.5 4E-14 8.7E-19 91.9 8.2 70 29-101 1-71 (71)
65 cd03201 GST_C_DHAR GST_C famil 99.5 1.2E-13 2.7E-18 100.1 11.4 90 142-235 31-121 (121)
66 cd03185 GST_C_Tau GST_C family 99.5 2.2E-13 4.7E-18 99.4 9.7 114 115-234 2-125 (126)
67 cd03054 GST_N_Metaxin GST_N fa 99.5 4.4E-13 9.5E-18 88.2 8.4 64 30-103 2-72 (72)
68 cd03196 GST_C_5 GST_C family, 99.4 2.1E-12 4.6E-17 92.9 9.2 102 113-220 3-115 (115)
69 cd03186 GST_C_SspA GST_N famil 99.4 2E-12 4.3E-17 91.7 8.6 97 115-219 2-106 (107)
70 cd03209 GST_C_Mu GST_C family, 99.3 4.3E-12 9.2E-17 92.1 8.3 97 116-220 2-107 (121)
71 cd03210 GST_C_Pi GST_C family, 99.3 4.4E-12 9.6E-17 92.7 8.2 100 116-220 3-110 (126)
72 cd03200 GST_C_JTV1 GST_C famil 99.3 1.8E-11 4E-16 85.0 9.5 94 97-213 1-96 (96)
73 KOG3027 Mitochondrial outer me 99.3 1.7E-11 3.6E-16 93.6 9.9 167 27-212 27-247 (257)
74 cd03188 GST_C_Beta GST_C famil 99.3 6.4E-12 1.4E-16 89.8 7.2 96 116-220 2-114 (114)
75 cd03208 GST_C_Alpha GST_C fami 99.3 1.1E-11 2.4E-16 91.9 8.4 100 116-221 3-114 (137)
76 cd03182 GST_C_GTT2_like GST_C 99.3 2.7E-11 5.8E-16 87.1 9.2 96 113-216 1-117 (117)
77 cd03178 GST_C_Ure2p_like GST_C 99.2 1.3E-11 2.8E-16 88.2 5.2 71 142-220 41-112 (113)
78 cd03079 GST_N_Metaxin2 GST_N f 99.2 6.1E-11 1.3E-15 77.7 7.5 60 35-103 15-74 (74)
79 cd03187 GST_C_Phi GST_C family 99.2 3.1E-11 6.7E-16 86.9 6.8 71 143-220 47-118 (118)
80 PF00043 GST_C: Glutathione S- 99.2 6.2E-11 1.3E-15 82.0 8.0 66 141-214 28-95 (95)
81 cd03189 GST_C_GTT1_like GST_C 99.2 9.9E-11 2.1E-15 84.4 9.0 95 111-214 2-119 (119)
82 cd03191 GST_C_Zeta GST_C famil 99.2 5.9E-11 1.3E-15 86.0 7.8 99 115-220 2-117 (121)
83 cd03177 GST_C_Delta_Epsilon GS 99.2 1.2E-10 2.6E-15 84.0 8.3 71 142-220 39-110 (118)
84 cd03181 GST_C_EFB1gamma GST_C 99.2 6.9E-11 1.5E-15 85.7 6.7 73 142-220 41-114 (123)
85 TIGR02190 GlrX-dom Glutaredoxi 99.2 2.3E-10 4.9E-15 76.6 8.5 76 23-101 4-79 (79)
86 cd03183 GST_C_Theta GST_C fami 99.2 7.7E-11 1.7E-15 86.0 6.6 71 143-220 47-120 (126)
87 cd03180 GST_C_2 GST_C family, 99.1 2.4E-10 5.3E-15 81.1 8.1 65 143-216 45-110 (110)
88 cd03195 GST_C_4 GST_C family, 99.1 2.4E-10 5.3E-15 82.0 7.9 96 115-220 2-111 (114)
89 cd03207 GST_C_8 GST_C family, 99.1 1.7E-10 3.7E-15 81.1 6.8 69 142-220 31-100 (103)
90 PF13410 GST_C_2: Glutathione 99.1 3.1E-10 6.6E-15 73.8 6.5 62 142-209 7-69 (69)
91 cd03204 GST_C_GDAP1 GST_C fami 99.1 4.7E-10 1E-14 79.6 7.3 70 142-216 30-111 (111)
92 PF14497 GST_C_3: Glutathione 99.0 8.8E-10 1.9E-14 77.0 6.0 92 113-212 2-99 (99)
93 cd03206 GST_C_7 GST_C family, 99.0 1.9E-09 4.2E-14 75.3 7.0 66 142-216 34-100 (100)
94 cd03194 GST_C_3 GST_C family, 99.0 3.6E-09 7.8E-14 75.9 8.0 71 142-220 42-112 (114)
95 cd03078 GST_N_Metaxin1_like GS 99.0 4.3E-09 9.2E-14 69.2 7.5 58 36-103 15-72 (73)
96 cd03192 GST_C_Sigma_like GST_C 98.9 5.4E-09 1.2E-13 73.5 7.9 89 116-210 2-104 (104)
97 PRK10638 glutaredoxin 3; Provi 98.9 8.9E-09 1.9E-13 69.5 8.2 71 28-101 3-74 (83)
98 cd03202 GST_C_etherase_LigE GS 98.9 4.9E-09 1.1E-13 76.3 6.5 68 139-213 56-124 (124)
99 cd03029 GRX_hybridPRX5 Glutare 98.9 1.6E-08 3.4E-13 66.3 8.2 71 28-101 2-72 (72)
100 cd03179 GST_C_1 GST_C family, 98.8 5.8E-09 1.3E-13 73.3 5.5 61 142-211 44-105 (105)
101 KOG3028 Translocase of outer m 98.8 2.5E-07 5.5E-12 75.5 13.7 164 36-212 16-233 (313)
102 PF14834 GST_C_4: Glutathione 98.8 3.7E-08 8.1E-13 68.8 7.6 98 113-220 1-112 (117)
103 cd03193 GST_C_Metaxin GST_C fa 98.7 1.4E-08 2.9E-13 69.3 4.7 68 141-211 19-88 (88)
104 cd00299 GST_C_family Glutathio 98.7 4.9E-08 1.1E-12 67.5 6.1 63 142-210 37-100 (100)
105 cd03027 GRX_DEP Glutaredoxin ( 98.7 1.1E-07 2.5E-12 62.4 7.5 69 27-98 1-70 (73)
106 PRK10329 glutaredoxin-like pro 98.6 1.3E-07 2.8E-12 63.4 6.8 61 27-91 1-62 (81)
107 cd02066 GRX_family Glutaredoxi 98.6 2.8E-07 6.1E-12 59.7 7.6 68 29-99 2-70 (72)
108 cd03211 GST_C_Metaxin2 GST_C f 98.6 4.6E-08 1E-12 71.4 3.5 68 141-211 57-126 (126)
109 TIGR02196 GlrX_YruB Glutaredox 98.5 4.8E-07 1E-11 58.9 7.4 69 29-100 2-73 (74)
110 TIGR02200 GlrX_actino Glutared 98.5 6.1E-07 1.3E-11 59.2 7.4 70 28-100 1-75 (77)
111 cd03197 GST_C_mPGES2 GST_C fam 98.5 4.6E-07 9.9E-12 67.2 6.3 66 140-212 78-145 (149)
112 cd02976 NrdH NrdH-redoxin (Nrd 98.5 8E-07 1.7E-11 57.7 6.7 61 29-92 2-63 (73)
113 cd03418 GRX_GRXb_1_3_like Glut 98.4 1.2E-06 2.6E-11 57.6 7.2 71 28-101 1-73 (75)
114 cd03212 GST_C_Metaxin1_3 GST_C 98.4 2.5E-07 5.4E-12 68.5 4.2 69 141-212 64-134 (137)
115 cd03205 GST_C_6 GST_C family, 98.4 1.1E-06 2.4E-11 61.0 5.8 60 142-210 38-98 (98)
116 PRK11200 grxA glutaredoxin 1; 98.3 4.9E-06 1.1E-10 56.2 8.2 76 27-105 1-84 (85)
117 COG0695 GrxC Glutaredoxin and 98.3 6.5E-06 1.4E-10 55.0 8.2 69 28-99 2-73 (80)
118 TIGR02194 GlrX_NrdH Glutaredox 98.3 3.1E-06 6.7E-11 55.3 6.2 56 29-88 1-57 (72)
119 TIGR02183 GRXA Glutaredoxin, G 98.2 9.1E-06 2E-10 55.1 8.2 76 29-105 2-83 (86)
120 TIGR02181 GRX_bact Glutaredoxi 98.2 3.4E-06 7.4E-11 56.1 6.0 71 29-102 1-72 (79)
121 PHA03050 glutaredoxin; Provisi 98.2 1.1E-05 2.4E-10 57.0 8.8 73 25-98 11-88 (108)
122 TIGR02189 GlrX-like_plant Glut 98.2 1.4E-05 3.1E-10 55.6 9.1 72 25-99 6-81 (99)
123 PF00462 Glutaredoxin: Glutare 98.2 2.4E-06 5.2E-11 53.7 4.7 59 29-90 1-60 (60)
124 cd03419 GRX_GRXh_1_2_like Glut 98.2 1.6E-05 3.4E-10 53.1 8.6 71 29-102 2-76 (82)
125 TIGR02180 GRX_euk Glutaredoxin 98.1 4E-05 8.7E-10 51.3 8.6 73 29-102 1-77 (84)
126 TIGR00365 monothiol glutaredox 97.9 7.9E-05 1.7E-09 51.7 8.3 73 25-100 10-88 (97)
127 cd03028 GRX_PICOT_like Glutare 97.8 0.00015 3.3E-09 49.5 8.1 73 25-100 6-84 (90)
128 PF10568 Tom37: Outer mitochon 97.8 0.00017 3.7E-09 47.0 7.1 57 36-100 13-71 (72)
129 cd03199 GST_C_GRX2 GST_C famil 97.3 0.0027 5.8E-08 46.0 8.8 66 141-216 60-125 (128)
130 PRK10824 glutaredoxin-4; Provi 97.2 0.0031 6.7E-08 45.0 7.8 73 25-100 13-91 (115)
131 PRK12759 bifunctional gluaredo 97.1 0.0025 5.4E-08 55.8 8.2 69 28-98 3-79 (410)
132 cd03031 GRX_GRX_like Glutaredo 97.0 0.0044 9.5E-08 46.2 7.9 69 28-99 1-80 (147)
133 PF05768 DUF836: Glutaredoxin- 97.0 0.0052 1.1E-07 41.0 7.4 57 28-87 1-57 (81)
134 cd02973 TRX_GRX_like Thioredox 97.0 0.0025 5.3E-08 40.6 5.4 62 28-91 2-64 (67)
135 KOG1752 Glutaredoxin and relat 96.8 0.018 3.8E-07 40.3 8.8 74 25-101 12-89 (104)
136 PF04399 Glutaredoxin2_C: Glut 96.8 0.0057 1.2E-07 44.7 6.3 66 141-216 59-124 (132)
137 KOG1147 Glutamyl-tRNA syntheta 96.6 0.0012 2.6E-08 58.1 2.0 106 85-208 43-150 (712)
138 PTZ00062 glutaredoxin; Provisi 96.5 0.016 3.5E-07 45.7 7.9 72 25-99 111-188 (204)
139 cd03036 ArsC_like Arsenate Red 96.4 0.0035 7.6E-08 44.5 3.4 32 29-62 1-32 (111)
140 cd02977 ArsC_family Arsenate R 96.2 0.0074 1.6E-07 42.3 4.1 32 29-62 1-32 (105)
141 COG4545 Glutaredoxin-related p 96.0 0.017 3.7E-07 37.3 4.5 65 27-91 2-77 (85)
142 PRK01655 spxA transcriptional 95.9 0.0093 2E-07 43.7 3.6 31 29-61 2-32 (131)
143 TIGR01617 arsC_related transcr 95.6 0.021 4.6E-07 40.8 4.2 32 29-62 1-32 (117)
144 cd03032 ArsC_Spx Arsenate Redu 95.5 0.025 5.4E-07 40.3 4.5 32 29-62 2-33 (115)
145 PRK12559 transcriptional regul 95.3 0.028 6.1E-07 41.1 4.2 32 29-62 2-33 (131)
146 cd03035 ArsC_Yffb Arsenate Red 95.1 0.033 7.1E-07 39.1 3.8 32 29-62 1-32 (105)
147 PRK13344 spxA transcriptional 94.9 0.036 7.8E-07 40.6 3.8 32 29-62 2-33 (132)
148 TIGR00411 redox_disulf_1 small 94.8 0.071 1.5E-06 35.0 4.8 57 28-88 2-62 (82)
149 cd03033 ArsC_15kD Arsenate Red 94.8 0.046 9.9E-07 38.9 3.8 31 29-61 2-32 (113)
150 TIGR00412 redox_disulf_2 small 94.7 0.24 5.3E-06 32.3 6.9 56 28-91 2-61 (76)
151 COG1393 ArsC Arsenate reductas 94.3 0.091 2E-06 37.6 4.5 32 28-59 2-33 (117)
152 cd03026 AhpF_NTD_C TRX-GRX-lik 93.5 0.18 3.9E-06 34.2 4.6 62 28-91 15-77 (89)
153 PF11287 DUF3088: Protein of u 93.2 0.31 6.8E-06 34.2 5.4 70 36-105 23-108 (112)
154 PRK10026 arsenate reductase; P 92.9 0.2 4.4E-06 37.1 4.4 33 27-61 2-34 (141)
155 TIGR01616 nitro_assoc nitrogen 92.9 0.18 4E-06 36.5 4.2 32 28-61 2-33 (126)
156 PHA02125 thioredoxin-like prot 92.7 0.4 8.6E-06 31.1 5.3 50 29-84 2-51 (75)
157 cd01659 TRX_superfamily Thiore 92.4 0.45 9.7E-06 28.3 5.0 55 29-84 1-58 (69)
158 COG0278 Glutaredoxin-related p 92.0 0.99 2.2E-05 31.1 6.4 71 26-100 14-92 (105)
159 cd03030 GRX_SH3BGR Glutaredoxi 91.6 1.6 3.5E-05 29.7 7.3 67 29-98 2-79 (92)
160 cd03034 ArsC_ArsC Arsenate Red 91.5 0.3 6.6E-06 34.6 3.9 31 29-61 1-31 (112)
161 TIGR00014 arsC arsenate reduct 91.5 0.31 6.7E-06 34.7 3.9 31 29-61 1-31 (114)
162 PRK10853 putative reductase; P 91.2 0.32 6.8E-06 34.9 3.7 31 29-61 2-32 (118)
163 PF13192 Thioredoxin_3: Thiore 90.1 0.79 1.7E-05 29.8 4.6 58 28-93 2-63 (76)
164 PF04908 SH3BGR: SH3-binding, 87.3 3.3 7.3E-05 28.6 6.3 71 27-99 1-86 (99)
165 PF00085 Thioredoxin: Thioredo 86.3 4.4 9.5E-05 27.2 6.7 74 27-102 19-102 (103)
166 KOG3425 Uncharacterized conser 85.7 2.9 6.3E-05 29.9 5.3 66 35-103 43-122 (128)
167 TIGR01295 PedC_BrcD bacterioci 85.3 2.7 5.8E-05 30.2 5.3 20 29-48 27-46 (122)
168 cd02949 TRX_NTR TRX domain, no 83.9 5.7 0.00012 26.8 6.3 61 28-90 16-80 (97)
169 cd02989 Phd_like_TxnDC9 Phosdu 83.7 6.4 0.00014 27.7 6.6 61 28-91 25-89 (113)
170 cd02984 TRX_PICOT TRX domain, 82.7 9.6 0.00021 25.4 7.1 61 28-90 17-81 (97)
171 PF11801 Tom37_C: Tom37 C-term 82.5 1.9 4.2E-05 32.9 3.7 40 145-184 112-153 (168)
172 PRK09381 trxA thioredoxin; Pro 79.3 8.9 0.00019 26.4 6.1 61 28-90 24-88 (109)
173 cd02975 PfPDO_like_N Pyrococcu 78.6 7.4 0.00016 27.3 5.5 54 29-84 25-80 (113)
174 KOG0911 Glutaredoxin-related p 76.9 7.9 0.00017 30.9 5.5 71 27-100 139-215 (227)
175 TIGR02187 GlrX_arch Glutaredox 76.7 10 0.00022 30.0 6.3 55 28-84 136-191 (215)
176 cd02947 TRX_family TRX family; 74.2 15 0.00032 23.6 5.8 59 28-88 13-74 (93)
177 PF03960 ArsC: ArsC family; I 72.6 5.7 0.00012 27.8 3.5 29 32-62 1-29 (110)
178 PTZ00051 thioredoxin; Provisio 72.3 12 0.00025 25.0 5.1 60 28-90 21-84 (98)
179 TIGR03143 AhpF_homolog putativ 72.0 7.7 0.00017 35.6 5.1 58 28-91 479-541 (555)
180 cd02956 ybbN ybbN protein fami 71.4 17 0.00036 24.2 5.6 59 29-89 16-78 (96)
181 cd02963 TRX_DnaJ TRX domain, D 69.7 12 0.00027 26.0 4.8 58 28-89 27-91 (111)
182 cd02962 TMX2 TMX2 family; comp 69.5 18 0.00038 27.1 5.8 62 29-91 51-122 (152)
183 PRK10996 thioredoxin 2; Provis 69.4 29 0.00063 25.3 6.9 61 28-90 55-119 (139)
184 cd02959 ERp19 Endoplasmic reti 69.4 11 0.00024 26.7 4.5 63 28-92 22-92 (117)
185 PHA02278 thioredoxin-like prot 69.3 32 0.0007 23.7 6.7 61 29-90 18-85 (103)
186 COG3118 Thioredoxin domain-con 69.3 13 0.00028 31.0 5.3 75 27-106 45-132 (304)
187 PRK15317 alkyl hydroperoxide r 69.1 9.5 0.00021 34.6 5.1 75 26-103 117-197 (517)
188 TIGR01068 thioredoxin thioredo 68.3 15 0.00032 24.4 4.9 59 28-88 17-79 (101)
189 cd02954 DIM1 Dim1 family; Dim1 68.0 26 0.00057 24.8 6.1 60 29-90 18-81 (114)
190 TIGR03140 AhpF alkyl hydropero 66.4 11 0.00025 34.1 5.0 74 27-103 119-198 (515)
191 COG3011 Predicted thiol-disulf 66.0 51 0.0011 24.3 8.2 83 21-104 2-87 (137)
192 cd02953 DsbDgamma DsbD gamma f 65.9 22 0.00047 24.1 5.4 53 28-84 14-77 (104)
193 cd03003 PDI_a_ERdj5_N PDIa fam 64.4 33 0.00072 23.0 6.0 59 28-88 21-83 (101)
194 PF06110 DUF953: Eukaryotic pr 64.4 8 0.00017 27.7 2.9 60 35-95 36-107 (119)
195 cd02948 TRX_NDPK TRX domain, T 64.3 42 0.00092 22.8 6.7 59 29-90 21-84 (102)
196 PF09635 MetRS-N: MetRS-N bind 62.7 6.7 0.00015 28.1 2.2 27 79-105 35-63 (122)
197 PHA03075 glutaredoxin-like pro 62.1 9.1 0.0002 27.2 2.7 36 26-63 2-37 (123)
198 cd02957 Phd_like Phosducin (Ph 61.7 27 0.00057 24.3 5.2 62 28-93 27-92 (113)
199 cd02987 Phd_like_Phd Phosducin 61.6 44 0.00096 25.5 6.8 61 29-93 87-151 (175)
200 cd02952 TRP14_like Human TRX-r 61.2 33 0.00071 24.5 5.6 62 29-92 25-105 (119)
201 cd02951 SoxW SoxW family; SoxW 61.1 37 0.00081 23.9 6.0 18 27-44 16-33 (125)
202 cd02993 PDI_a_APS_reductase PD 58.6 24 0.00052 24.3 4.5 55 27-84 23-83 (109)
203 PTZ00443 Thioredoxin domain-co 56.4 67 0.0014 25.8 7.2 77 27-105 54-140 (224)
204 COG5515 Uncharacterized conser 55.5 13 0.00027 23.1 2.2 22 28-49 2-27 (70)
205 cd03004 PDI_a_ERdj5_C PDIa fam 54.9 29 0.00062 23.5 4.4 56 27-84 21-78 (104)
206 cd03005 PDI_a_ERp46 PDIa famil 54.1 31 0.00068 23.0 4.5 58 28-88 19-84 (102)
207 TIGR01126 pdi_dom protein disu 53.7 26 0.00056 23.3 4.0 55 27-84 15-74 (102)
208 TIGR02681 phage_pRha phage reg 52.6 17 0.00038 25.5 2.9 26 80-105 2-28 (108)
209 cd03006 PDI_a_EFP1_N PDIa fami 52.1 43 0.00094 23.5 5.0 56 28-84 32-89 (113)
210 PRK11657 dsbG disulfide isomer 52.0 27 0.00059 28.5 4.4 24 25-48 117-140 (251)
211 cd02997 PDI_a_PDIR PDIa family 51.8 32 0.0007 23.0 4.3 59 28-88 20-86 (104)
212 cd02965 HyaE HyaE family; HyaE 51.1 73 0.0016 22.5 5.9 64 27-92 29-98 (111)
213 cd02985 TRX_CDSP32 TRX family, 50.6 68 0.0015 21.8 5.7 61 28-90 18-84 (103)
214 cd02961 PDI_a_family Protein D 50.6 43 0.00094 21.8 4.7 56 27-84 17-76 (101)
215 TIGR02187 GlrX_arch Glutaredox 50.4 56 0.0012 25.7 5.9 58 29-88 23-88 (215)
216 PF13728 TraF: F plasmid trans 49.9 34 0.00074 27.2 4.6 32 29-62 124-159 (215)
217 cd02955 SSP411 TRX domain, SSP 47.5 96 0.0021 22.2 6.2 63 29-93 19-97 (124)
218 PRK10877 protein disulfide iso 46.2 40 0.00087 27.1 4.5 26 25-50 107-132 (232)
219 cd02998 PDI_a_ERp38 PDIa famil 44.8 52 0.0011 21.9 4.4 54 28-84 21-80 (105)
220 PF13098 Thioredoxin_2: Thiore 44.5 22 0.00047 24.4 2.5 21 28-48 8-28 (112)
221 cd03002 PDI_a_MPD1_like PDI fa 44.5 69 0.0015 21.6 5.0 59 28-88 21-85 (109)
222 cd03001 PDI_a_P5 PDIa family, 44.0 85 0.0018 20.8 5.4 55 28-84 21-77 (103)
223 KOG1668 Elongation factor 1 be 43.9 17 0.00037 29.1 1.9 58 147-217 10-68 (231)
224 cd02994 PDI_a_TMX PDIa family, 43.7 76 0.0016 21.1 5.1 55 28-84 19-76 (101)
225 cd02996 PDI_a_ERp44 PDIa famil 43.6 63 0.0014 22.0 4.7 59 28-88 21-89 (108)
226 cd03020 DsbA_DsbC_DsbG DsbA fa 43.5 50 0.0011 25.6 4.6 25 25-49 77-101 (197)
227 COG2761 FrnE Predicted dithiol 43.2 52 0.0011 26.4 4.6 28 25-52 4-35 (225)
228 cd02950 TxlA TRX-like protein 42.0 64 0.0014 23.6 4.7 60 29-90 24-90 (142)
229 PTZ00102 disulphide isomerase; 40.9 1.9E+02 0.0042 25.6 8.5 76 28-105 52-139 (477)
230 cd02999 PDI_a_ERp44_like PDIa 39.2 59 0.0013 22.1 3.9 54 28-84 21-77 (100)
231 cd02978 KaiB_like KaiB-like fa 38.2 78 0.0017 20.5 4.0 54 28-84 3-60 (72)
232 TIGR02740 TraF-like TraF-like 38.2 80 0.0017 26.1 5.2 35 29-63 170-204 (271)
233 PF04134 DUF393: Protein of un 37.2 1.4E+02 0.003 20.6 7.0 73 31-104 1-78 (114)
234 PF01323 DSBA: DSBA-like thior 36.9 58 0.0012 24.7 4.0 34 28-63 1-39 (193)
235 cd02988 Phd_like_VIAF Phosduci 35.3 83 0.0018 24.5 4.6 59 29-93 106-168 (192)
236 PF13462 Thioredoxin_4: Thiore 35.1 43 0.00093 24.5 2.9 23 25-47 12-34 (162)
237 TIGR01130 ER_PDI_fam protein d 34.9 2.6E+02 0.0057 24.4 8.3 76 28-105 21-110 (462)
238 cd03000 PDI_a_TMX3 PDIa family 34.9 1.4E+02 0.003 20.1 5.3 52 29-84 19-77 (104)
239 cd05295 MDH_like Malate dehydr 34.3 77 0.0017 28.4 4.7 67 35-111 2-72 (452)
240 cd02995 PDI_a_PDI_a'_C PDIa fa 33.5 1.1E+02 0.0024 20.2 4.6 54 27-84 20-78 (104)
241 KOG0910 Thioredoxin-like prote 32.9 2E+02 0.0043 21.6 6.0 61 28-90 64-128 (150)
242 cd02972 DsbA_family DsbA famil 31.0 92 0.002 19.9 3.8 22 29-50 1-22 (98)
243 cd03023 DsbA_Com1_like DsbA fa 29.8 63 0.0014 23.2 3.1 24 25-48 5-28 (154)
244 COG3019 Predicted metal-bindin 27.3 1.3E+02 0.0028 22.3 4.0 75 25-104 24-104 (149)
245 PF09413 DUF2007: Domain of un 26.5 62 0.0013 20.0 2.1 25 29-53 1-25 (67)
246 PF13344 Hydrolase_6: Haloacid 26.3 90 0.0019 21.3 3.1 68 37-109 16-83 (101)
247 PF12062 HSNSD: heparan sulfat 25.7 3.1E+02 0.0068 24.7 6.8 50 29-93 63-117 (487)
248 cd03019 DsbA_DsbA DsbA family, 24.3 99 0.0021 23.0 3.3 23 25-47 15-37 (178)
249 PF04564 U-box: U-box domain; 23.3 2.1E+02 0.0045 18.2 4.7 25 79-104 15-39 (73)
250 PRK13728 conjugal transfer pro 22.7 95 0.0021 24.0 2.9 15 29-43 73-87 (181)
251 KOG2501 Thioredoxin, nucleored 22.5 3.5E+02 0.0075 20.5 5.9 40 25-66 32-79 (157)
252 cd03010 TlpA_like_DsbE TlpA-li 21.6 1.6E+02 0.0035 20.5 3.8 38 29-66 29-66 (127)
253 KOG0190 Protein disulfide isom 21.5 3.8E+02 0.0082 24.4 6.7 73 29-105 46-133 (493)
254 PLN02309 5'-adenylylsulfate re 21.3 1.7E+02 0.0037 26.3 4.6 54 28-84 368-427 (457)
255 cd03021 DsbA_GSTK DsbA family, 20.9 1.8E+02 0.0039 22.6 4.3 33 28-62 2-38 (209)
256 cd04911 ACT_AKiii-YclM-BS_1 AC 20.1 99 0.0022 20.2 2.2 20 36-55 14-33 (76)
No 1
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.4e-37 Score=239.03 Aligned_cols=205 Identities=34% Similarity=0.508 Sum_probs=176.5
Q ss_pred CCCCeEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCCChhhhhhhcC-CCCCCCeEEeCCeEeechHHHHHHHHhc
Q 026482 25 FDGTTRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQDKPAWYKEKVY-PSNKVPSLEHNGKIIGESLDLINYVDSN 103 (238)
Q Consensus 25 ~~~~~~Ly~~~~sp~~~~v~~~L~~~gipy~~~~~~v~~~~~~~~~~~~~~-p~~~vP~L~~~g~~l~eS~aI~~yL~~~ 103 (238)
.++.++||++..|||++|++++|++|||| ++.+..|+.++++|+++ .| +.++||+|+++|..|.||..|++|||+.
T Consensus 6 ~~~~vrL~~~w~sPfa~R~~iaL~~KgI~--yE~veedl~~Ks~~ll~-~np~hkKVPvL~Hn~k~i~ESliiveYiDe~ 82 (231)
T KOG0406|consen 6 EDGTVKLLGMWFSPFAQRVRIALKLKGIP--YEYVEEDLTNKSEWLLE-KNPVHKKVPVLEHNGKPICESLIIVEYIDET 82 (231)
T ss_pred CCCeEEEEEeecChHHHHHHHHHHhcCCc--eEEEecCCCCCCHHHHH-hccccccCCEEEECCceehhhHHHHHHHHhh
Confidence 45889999999999999999999999998 78888899889999998 99 6799999999999999999999999999
Q ss_pred CC-CCCCCCCCHHHHHHHHHHHHhhhh---hhhhhhhhc-c----CCcHHHHhhHHHHHHHHhhccCCCCcccCC-ccHH
Q 026482 104 FE-GPSLLPDDPEKRKFAEELFSYSDT---FIKDVSTSF-K----GDTAKEAGPAFDFLEKALDKFDDGPFFLGQ-FSLV 173 (238)
Q Consensus 104 ~~-~~~l~p~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~----~~~~~~~~~~l~~le~~L~~~~~~~~l~G~-~t~a 173 (238)
++ +++++|+|+.+|+..+.|..+++. .....+-.. . +...+.+.+.|..||+.|.+ +.+|++|+ +++.
T Consensus 83 w~~~~~iLP~DPy~Ra~arfwa~~id~~~~~~~~~~~~~~~~e~~~~~~~e~~e~l~~lE~el~k--~k~~fgG~~~G~v 160 (231)
T KOG0406|consen 83 WPSGPPILPSDPYERAQARFWAEYIDKKVFFVGRFVVAAKGGEEQEAAKEELREALKVLEEELGK--GKDFFGGETIGFV 160 (231)
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhc--CCCCCCCCCcCHh
Confidence 99 689999999999999999999993 222222221 2 23445789999999999995 78999999 9999
Q ss_pred HHHHhhHHHHHHHHhhhcCC--CcccCCChhHHHHHHHHhcCcchhhcccCCChhhHHHHhcccc
Q 026482 174 DIAYIPFVDGYQMILSEGFK--YDATIGRPKLAAWIEELNKMDVYKQTKYFKDPKQLFEYYKIPF 236 (238)
Q Consensus 174 D~~l~~~l~~~~~~~~~~~~--~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 236 (238)
|+++++.+.++........+ .....++|+|.+|.+||.++|+|++++ ++.+.+++|+++++
T Consensus 161 Di~~~p~~~~~~~~~~~~~~~~~~~~~~~P~L~~W~~~~~~~~~V~~~~--p~~e~~~e~~~~~~ 223 (231)
T KOG0406|consen 161 DIAIGPSFERWLAVLEKFGGVKFIIEEETPKLIKWIKRMKEDEAVKAVL--PDSEKVVEFMKKYR 223 (231)
T ss_pred hhhHHhhHHHHHHHHHHhcCcccCCCCCCccHHHHHHHHhcChhHHhhc--CCHHHHHHHHHHHH
Confidence 99999888777666544442 233478999999999999999999999 99999999999875
No 2
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=100.00 E-value=1e-34 Score=231.34 Aligned_cols=183 Identities=18% Similarity=0.308 Sum_probs=151.4
Q ss_pred CCeEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCCChhhhhhhcCCCCCCCeEEeCCeEeechHHHHHHHHhcCCC
Q 026482 27 GTTRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLEHNGKIIGESLDLINYVDSNFEG 106 (238)
Q Consensus 27 ~~~~Ly~~~~sp~~~~v~~~L~~~gipy~~~~~~v~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~~~~~~ 106 (238)
+.|+||+++.||+|++|+++|+++|++ ++++.++...+++++++ +||.|+||+|+++|.+|+||.||++||++++++
T Consensus 9 ~~~~Ly~~~~s~~~~rv~~~L~e~gl~--~e~~~v~~~~~~~~~~~-~nP~g~VPvL~~~g~~l~ES~AIl~YL~~~~~~ 85 (211)
T PRK09481 9 SVMTLFSGPTDIYSHQVRIVLAEKGVS--VEIEQVEKDNLPQDLID-LNPYQSVPTLVDRELTLYESRIIMEYLDERFPH 85 (211)
T ss_pred CeeEEeCCCCChhHHHHHHHHHHCCCC--CEEEeCCcccCCHHHHH-hCCCCCCCEEEECCEEeeCHHHHHHHHHHhCCC
Confidence 358999999999999999999999997 56667777777778886 999999999999999999999999999999998
Q ss_pred CCCCCCCHHHHHHHHHHHHhhhhhhhhhhhhc-------cCCcHHHHhhHHHHHHHHhhccCCCCcccCC-ccHHHHHHh
Q 026482 107 PSLLPDDPEKRKFAEELFSYSDTFIKDVSTSF-------KGDTAKEAGPAFDFLEKALDKFDDGPFFLGQ-FSLVDIAYI 178 (238)
Q Consensus 107 ~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~~le~~L~~~~~~~~l~G~-~t~aD~~l~ 178 (238)
..++|.++.+++.+++|+.++..........+ .......+.+.+..+|+.|+ +++|++|+ +|+||++++
T Consensus 86 ~~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~---~~~~l~G~~~t~AD~~l~ 162 (211)
T PRK09481 86 PPLMPVYPVARGESRLMMHRIEKDWYSLMNKIVNGSASEADAARKQLREELLAIAPVFG---EKPYFMSEEFSLVDCYLA 162 (211)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhc---cCCcccCCCccHHHHHHH
Confidence 88999999999999999877652211111111 11234567888899999998 67999999 999999999
Q ss_pred hHHHHHHHHhhhcCCCccc-CCChhHHHHHHHHhcCcchhhcc
Q 026482 179 PFVDGYQMILSEGFKYDAT-IGRPKLAAWIEELNKMDVYKQTK 220 (238)
Q Consensus 179 ~~l~~~~~~~~~~~~~~~~-~~~p~l~~~~~~~~~~p~~~~~~ 220 (238)
+.+.++... +.++. +.+|+|.+|++++.+||+|++++
T Consensus 163 ~~~~~~~~~-----~~~~~~~~~p~l~~w~~~~~~rp~~~~~~ 200 (211)
T PRK09481 163 PLLWRLPVL-----GIELSGPGAKELKGYMTRVFERDSFLASL 200 (211)
T ss_pred HHHHHHHhc-----CCCCCCCCChhHHHHHHHHhccHHHHHHc
Confidence 998776432 33332 57899999999999999999999
No 3
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=100.00 E-value=1.5e-32 Score=220.08 Aligned_cols=198 Identities=19% Similarity=0.307 Sum_probs=154.0
Q ss_pred eCCCchHHHHHHHHHhcCCCCceeEEeccCCCChhhhhhhcCCCCCCCeEEeCCeEeechHHHHHHHHhcCCC---CCCC
Q 026482 34 AYTCPFAQRVWITRNYKGLQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLEHNGKIIGESLDLINYVDSNFEG---PSLL 110 (238)
Q Consensus 34 ~~~sp~~~~v~~~L~~~gipy~~~~~~v~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~~~~~~---~~l~ 110 (238)
...||||++|+++|.++|++ ++++.+++..+++++++ +||.|++|+|+++|.+|+||.+|++||+++++. +.+.
T Consensus 16 ~~~cp~~~rv~i~L~ekgi~--~e~~~vd~~~~~~~fl~-inP~g~vPvL~~~g~~l~ES~aI~eYL~e~~~~~~~p~l~ 92 (236)
T TIGR00862 16 IGNCPFSQRLFMILWLKGVV--FNVTTVDLKRKPEDLQN-LAPGTHPPFLTYNTEVKTDVNKIEEFLEETLCPPRYPKLS 92 (236)
T ss_pred CCCCHhHHHHHHHHHHcCCC--cEEEEECCCCCCHHHHH-HCcCCCCCEEEECCEEeecHHHHHHHHHHHcCCCCCCCCC
Confidence 35699999999999999997 66777788777888887 999999999999999999999999999999964 4466
Q ss_pred CCCHHHHHHHHHHHHhhhhhhhhhhhhccCCcHHHHhhHHHHHHHHhhcc---------------CCCCcccCC-ccHHH
Q 026482 111 PDDPEKRKFAEELFSYSDTFIKDVSTSFKGDTAKEAGPAFDFLEKALDKF---------------DDGPFFLGQ-FSLVD 174 (238)
Q Consensus 111 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~---------------~~~~~l~G~-~t~aD 174 (238)
|.++..++....+...+..++..-...-.+.....+.+.+..||+.|.+. ++++|+.|+ +|+||
T Consensus 93 p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Le~~L~~~~~~~~~~~~~~~~~~~~~~f~~Gd~~tlaD 172 (236)
T TIGR00862 93 PKHPESNTAGLDIFAKFSAYIKNSNPEANDNLEKGLLKALKKLDDYLNSPLPEEIDEDSAEDEKVSRRKFLDGDELTLAD 172 (236)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccCCCcccCCccchhh
Confidence 77766555322121111111111000001112345889999999999731 157999999 99999
Q ss_pred HHHhhHHHHHHHHhhhcCCCcccCCChhHHHHHHHHhcCcchhhcccCCChhhHHHHhcccc
Q 026482 175 IAYIPFVDGYQMILSEGFKYDATIGRPKLAAWIEELNKMDVYKQTKYFKDPKQLFEYYKIPF 236 (238)
Q Consensus 175 ~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 236 (238)
|++++.+.++........+.++.+++|+|.+|++++.++|+|++++ ++++.++.+|+..+
T Consensus 173 ~~l~p~l~~l~~~~~~~~~~~i~~~~p~l~~w~~~~~~~~sf~~t~--p~~~~i~~~~~~~~ 232 (236)
T TIGR00862 173 CNLLPKLHIVKVVAKKYRNFDIPAEFTGVWRYLSNAYAREEFTNTC--PDDKEIELAYADVA 232 (236)
T ss_pred HHHHHHHHHHHHHHHHHhCcCccccCchHHHHHHHHhccchHHhhC--CChHHHHHHHHHHh
Confidence 9999999998765555557776789999999999999999999999 99999999998764
No 4
>PLN02473 glutathione S-transferase
Probab=100.00 E-value=7.4e-33 Score=221.03 Aligned_cols=185 Identities=19% Similarity=0.273 Sum_probs=145.8
Q ss_pred CCeEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCC---CChhhhhhhcCCCCCCCeEEeCCeEeechHHHHHHHHhc
Q 026482 27 GTTRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQ---DKPAWYKEKVYPSNKVPSLEHNGKIIGESLDLINYVDSN 103 (238)
Q Consensus 27 ~~~~Ly~~~~sp~~~~v~~~L~~~gipy~~~~~~v~~~---~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~~~ 103 (238)
|.||||+++.||+++||+++|+++|++|++ +.++.. ..++.++. +||.|+||+|++||.+|+||.+|++||+++
T Consensus 1 ~~~kLy~~~~s~~~~rv~~~L~e~gi~ye~--~~v~~~~~~~~~~~~~~-~nP~g~vP~L~~~g~~l~ES~aI~~YL~~~ 77 (214)
T PLN02473 1 MVVKVYGQIKAANPQRVLLCFLEKGIEFEV--IHVDLDKLEQKKPEHLL-RQPFGQVPAIEDGDLKLFESRAIARYYATK 77 (214)
T ss_pred CceEEecCCCCCchHHHHHHHHHcCCCceE--EEecCcccccCCHHHHh-hCCCCCCCeEEECCEEEEehHHHHHHHHHH
Confidence 468999999999999999999999998554 444443 33445555 899999999999999999999999999999
Q ss_pred CCCC--CCCCCCHHHHHHHHHHHHhhhhhhhhh---------hh-hccC--------CcHHHHhhHHHHHHHHhhccCCC
Q 026482 104 FEGP--SLLPDDPEKRKFAEELFSYSDTFIKDV---------ST-SFKG--------DTAKEAGPAFDFLEKALDKFDDG 163 (238)
Q Consensus 104 ~~~~--~l~p~~~~~~~~~~~~~~~~~~~~~~~---------~~-~~~~--------~~~~~~~~~l~~le~~L~~~~~~ 163 (238)
+++. +++|.++.+++.+++|+.+..+.+... +. .... ....++.+.++.||+.|+ ++
T Consensus 78 ~~~~~~~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~---~~ 154 (214)
T PLN02473 78 YADQGTDLLGKTLEHRAIVDQWVEVENNYFYAVALPLVINLVFKPRLGEPCDVALVEELKVKFDKVLDVYENRLA---TN 154 (214)
T ss_pred cCCcCCCCCCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhcccccCCCChHHHHHHHHHHHHHHHHHHHHhc---cC
Confidence 9753 689999999999999998776433221 11 0111 123567888999999998 57
Q ss_pred CcccCC-ccHHHHHHhhHHHHHHHHhhhcCCCcccCCChhHHHHHHHHhcCcchhhcc
Q 026482 164 PFFLGQ-FSLVDIAYIPFVDGYQMILSEGFKYDATIGRPKLAAWIEELNKMDVYKQTK 220 (238)
Q Consensus 164 ~~l~G~-~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~ 220 (238)
+|++|+ +|+||+++++.+.++..... ...+.+++|+|.+|++++.+||+|++++
T Consensus 155 ~~l~Gd~~t~ADi~~~~~~~~~~~~~~---~~~~~~~~P~l~~w~~~~~~~p~~~~~~ 209 (214)
T PLN02473 155 RYLGGDEFTLADLTHMPGMRYIMNETS---LSGLVTSRENLNRWWNEISARPAWKKLM 209 (214)
T ss_pred CcccCCCCCHHHHHHHHHHHHHHhccc---cHHHHhcCHHHHHHHHHHhcChhhHHHH
Confidence 899999 99999999999877642211 1123468999999999999999999987
No 5
>PRK15113 glutathione S-transferase; Provisional
Probab=100.00 E-value=2.4e-31 Score=212.36 Aligned_cols=181 Identities=18% Similarity=0.293 Sum_probs=145.1
Q ss_pred CCeEEEeeC--CCchHHHHHHHHHhcCCCCceeEEeccCCC---ChhhhhhhcCCCCCCCeEEeCCeEeechHHHHHHHH
Q 026482 27 GTTRLYMAY--TCPFAQRVWITRNYKGLQDEIKLVAFDLQD---KPAWYKEKVYPSNKVPSLEHNGKIIGESLDLINYVD 101 (238)
Q Consensus 27 ~~~~Ly~~~--~sp~~~~v~~~L~~~gipy~~~~~~v~~~~---~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~ 101 (238)
..++||+.+ .||+|++|+++|+++||+ ++.+.++... ..+++++ +||.|+||+|++||.+|+||.+|++||+
T Consensus 4 ~~~~Ly~~~~~~s~~~~rv~~~l~e~gi~--~e~~~v~~~~~~~~~~~~~~-~nP~g~VP~L~~~~~~l~ES~aI~~YL~ 80 (214)
T PRK15113 4 PAITLYSDAHFFSPYVMSAFVALQEKGLP--FELKTVDLDAGEHLQPTYQG-YSLTRRVPTLQHDDFELSESSAIAEYLE 80 (214)
T ss_pred CeEEEEeCCCCCCchHHHHHHHHHHcCCC--CeEEEeCCCCccccCHHHHh-cCCCCCCCEEEECCEEEecHHHHHHHHH
Confidence 348999976 799999999999999998 5555666533 3466776 9999999999999999999999999999
Q ss_pred hcCCCCC---CCCCCHHHHHHHHHHHHhhh-hhhhhhh--------hhc-----cCCcHHHHhhHHHHHHHHhhccCCCC
Q 026482 102 SNFEGPS---LLPDDPEKRKFAEELFSYSD-TFIKDVS--------TSF-----KGDTAKEAGPAFDFLEKALDKFDDGP 164 (238)
Q Consensus 102 ~~~~~~~---l~p~~~~~~~~~~~~~~~~~-~~~~~~~--------~~~-----~~~~~~~~~~~l~~le~~L~~~~~~~ 164 (238)
++++++. ++|.++.+++++++|+.+.+ ++..... ... .+...+.+.+.++.+|+.|+. +++
T Consensus 81 ~~~~~~~~~~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~ 158 (214)
T PRK15113 81 ERFAPPAWERIYPADLQARARARQIQAWLRSDLMPLREERPTDVVFAGAKKAPLSEAGKAAAEKLFAVAERLLAP--GQP 158 (214)
T ss_pred HHcCCCCccccCCCCHHHHHHHHHHHHHHHhhhHHHhccCccchhccCCCCCcccHHHHHHHHHHHHHHHHHHhc--CCC
Confidence 9998765 99999999999999999886 4432111 000 112346788899999999973 457
Q ss_pred cccCCccHHHHHHhhHHHHHHHHhhhcCCCcccCCChhHHHHHHHHhcCcchhhcc
Q 026482 165 FFLGQFSLVDIAYIPFVDGYQMILSEGFKYDATIGRPKLAAWIEELNKMDVYKQTK 220 (238)
Q Consensus 165 ~l~G~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~ 220 (238)
|++|++|+||+++++.+.++... +..+ .|+|.+|++|+.+||+|++++
T Consensus 159 ~l~G~~TlADi~l~~~l~~~~~~-----~~~~---~p~l~~~~~r~~~rp~~~~~~ 206 (214)
T PRK15113 159 NLFGEWCIADTDLALMLNRLVLH-----GDEV---PERLADYATFQWQRASVQRWL 206 (214)
T ss_pred EeeCCccHHHHHHHHHHHHHHHc-----CCCC---CHHHHHHHHHHhcCHHHHHHH
Confidence 99888999999999999876432 3332 299999999999999999988
No 6
>PRK10357 putative glutathione S-transferase; Provisional
Probab=99.97 E-value=6.9e-31 Score=207.85 Aligned_cols=184 Identities=22% Similarity=0.249 Sum_probs=146.8
Q ss_pred eEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCCChhhhhhhcCCCCCCCeEE-eCCeEeechHHHHHHHHhcCCCC
Q 026482 29 TRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLE-HNGKIIGESLDLINYVDSNFEGP 107 (238)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~L~~~gipy~~~~~~v~~~~~~~~~~~~~~p~~~vP~L~-~~g~~l~eS~aI~~yL~~~~~~~ 107 (238)
++||+++.||++++|+++|+++||+| +.+.++...++.++.. +||.|++|+|+ ++|.+|+||.+|++||++.+++.
T Consensus 1 ~~Ly~~~~s~~~~~v~~~L~~~gv~y--e~~~~~~~~~~~~~~~-~nP~g~vP~L~~~~g~~l~eS~aI~~yL~~~~~~~ 77 (202)
T PRK10357 1 MKLIGSYTSPFVRKISILLLEKGITF--EFVNELPYNADNGVAQ-YNPLGKVPALVTEEGECWFDSPIIAEYIELLNVAP 77 (202)
T ss_pred CeeecCCCCchHHHHHHHHHHcCCCC--eEEecCCCCCchhhhh-cCCccCCCeEEeCCCCeeecHHHHHHHHHHhCCCC
Confidence 58999999999999999999999985 4556666556667776 89999999998 78899999999999999999877
Q ss_pred CCCCCCHHHHHHHHHHHHhhhhhhhhhh----hhc-c---------CCcHHHHhhHHHHHHHHhhccCCCCcccCC-ccH
Q 026482 108 SLLPDDPEKRKFAEELFSYSDTFIKDVS----TSF-K---------GDTAKEAGPAFDFLEKALDKFDDGPFFLGQ-FSL 172 (238)
Q Consensus 108 ~l~p~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~---------~~~~~~~~~~l~~le~~L~~~~~~~~l~G~-~t~ 172 (238)
.++|.++.+++.+++|..+.+....... ... . ......+.+.++.||+.|. +++ ++|+ +|+
T Consensus 78 ~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~---~~~-l~Gd~~t~ 153 (202)
T PRK10357 78 AMLPRDPLAALRVRQLEALADGIMDAALVSVREQARPAAQQSEDELLRQREKINRSLDALEGYLV---DGT-LKTDTVNL 153 (202)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHHHHHHHHHhhc---cCc-ccCCCcCH
Confidence 8999999999999999877654332211 100 0 1223567888999999998 456 9999 999
Q ss_pred HHHHHhhHHHHHHHHhhhcCCCcccCCChhHHHHHHHHhcCcchhhcccCCC
Q 026482 173 VDIAYIPFVDGYQMILSEGFKYDATIGRPKLAAWIEELNKMDVYKQTKYFKD 224 (238)
Q Consensus 173 aD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~ 224 (238)
||+++++.+.++.... .+..+..++|+|.+|++++.+||+|+++. ++
T Consensus 154 ADi~l~~~l~~~~~~~---~~~~~~~~~p~l~~~~~~i~~rp~~~~~~--~~ 200 (202)
T PRK10357 154 ATIAIACAVGYLNFRR---VAPGWCVDRPHLVKLVENLFQRESFARTE--PP 200 (202)
T ss_pred HHHHHHHHHHHHHhcc---cCcchhhcChHHHHHHHHHhcChhhhhcC--CC
Confidence 9999999998774321 12222357899999999999999999998 54
No 7
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=99.97 E-value=1.9e-30 Score=212.17 Aligned_cols=190 Identities=21% Similarity=0.385 Sum_probs=149.8
Q ss_pred CCCchHHHHHHHHHhcCCCCceeEEeccCCCChhhhhhhcCCCCCCCeEEeCCeEeechHHHHHHHHhcCCCCCCCCCCH
Q 026482 35 YTCPFAQRVWITRNYKGLQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLEHNGKIIGESLDLINYVDSNFEGPSLLPDDP 114 (238)
Q Consensus 35 ~~sp~~~~v~~~L~~~gipy~~~~~~v~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~~~~~~~~l~p~~~ 114 (238)
..||||++++++|+++|++ |+++.++...+++++++ +||.|+||+|+++|.+|+||.+|++||+++++++.+. ++
T Consensus 71 g~cp~s~rV~i~L~ekgi~--ye~~~vdl~~~~~~fl~-iNP~GkVPvL~~d~~~L~ES~aI~~YL~e~~p~~~L~--~~ 145 (265)
T PLN02817 71 GDCPFCQRVLLTLEEKHLP--YDMKLVDLTNKPEWFLK-ISPEGKVPVVKLDEKWVADSDVITQALEEKYPDPPLA--TP 145 (265)
T ss_pred CCCcHHHHHHHHHHHcCCC--CEEEEeCcCcCCHHHHh-hCCCCCCCEEEECCEEEecHHHHHHHHHHHCCCCCCC--CH
Confidence 3599999999999999998 55666677778888887 9999999999988899999999999999999887664 56
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhc-cCCcHHHHhhHHHHHHHHhhccCCCCcccCC-ccHHHHHHhhHHHHHHHHhhhcC
Q 026482 115 EKRKFAEELFSYSDTFIKDVSTSF-KGDTAKEAGPAFDFLEKALDKFDDGPFFLGQ-FSLVDIAYIPFVDGYQMILSEGF 192 (238)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~le~~L~~~~~~~~l~G~-~t~aD~~l~~~l~~~~~~~~~~~ 192 (238)
.+++.+.+++.. .+...+...- .......+.+.++.||+.|++ +++|++|+ +|+||+++++.+.++........
T Consensus 146 ~era~i~~~l~~--~~~~~~~~~~~~~~~~~~l~~~l~~LE~~L~~--~g~yl~Gd~~SlADi~l~p~L~~l~~~~~~~~ 221 (265)
T PLN02817 146 PEKASVGSKIFS--TFIGFLKSKDPGDGTEQALLDELTSFDDYIKE--NGPFINGEKISAADLSLGPKLYHLEIALGHYK 221 (265)
T ss_pred HHHHHHHHHHHH--HHHHHhccCCcchHHHHHHHHHHHHHHHHHhc--CCCeeCCCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 777777664321 2111111110 111234678889999999984 46999999 99999999999988765433233
Q ss_pred CCcccCCChhHHHHHHHHhcCcchhhcccCCChhhHHHHhccc
Q 026482 193 KYDATIGRPKLAAWIEELNKMDVYKQTKYFKDPKQLFEYYKIP 235 (238)
Q Consensus 193 ~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 235 (238)
+.++.+.+|+|.+|++++.++|+|++++ +..+.+.+.|+.+
T Consensus 222 ~~~i~~~~P~L~~w~~ri~~rps~~~~~--~~~~~~~~~~~~~ 262 (265)
T PLN02817 222 NWSVPDSLPFVKSYMKNIFSMESFVKTR--ALPEDVIAGWRPK 262 (265)
T ss_pred CCCccccCHHHHHHHHHHhcchhHhhcC--CCHHHHHHHhHhh
Confidence 3444578999999999999999999999 8899999999875
No 8
>PRK10542 glutathionine S-transferase; Provisional
Probab=99.97 E-value=5.5e-31 Score=208.21 Aligned_cols=181 Identities=19% Similarity=0.330 Sum_probs=142.6
Q ss_pred eEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCC--CChhhhhhhcCCCCCCCeEE-eCCeEeechHHHHHHHHhcCC
Q 026482 29 TRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQ--DKPAWYKEKVYPSNKVPSLE-HNGKIIGESLDLINYVDSNFE 105 (238)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~L~~~gipy~~~~~~v~~~--~~~~~~~~~~~p~~~vP~L~-~~g~~l~eS~aI~~yL~~~~~ 105 (238)
|+||+...| ++++++++|+++||+|++..+.+... ..++++++ +||.|+||+|+ +||.+|+||.+|++||+++++
T Consensus 1 m~l~~~~~s-~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~-~nP~g~vPvL~~~~g~~l~eS~aI~~YL~~~~~ 78 (201)
T PRK10542 1 MKLFYKPGA-CSLASHITLRESGLDFTLVSVDLAKKRLENGDDYLA-INPKGQVPALLLDDGTLLTEGVAIMQYLADSVP 78 (201)
T ss_pred CceeecccH-HHHHHHHHHHHcCCCceEEEeecccccccCChHHHH-hCcCCCCCeEEeCCCcEeecHHHHHHHHHHhCc
Confidence 589998866 79999999999999855544443222 23466776 99999999998 688999999999999999998
Q ss_pred CCCCC-CCCHHHHHHHHHHHHhhh-hhhhhhhhhcc--------CCcHHHHhhHHHHHHHHhhccCCCCcccCC-ccHHH
Q 026482 106 GPSLL-PDDPEKRKFAEELFSYSD-TFIKDVSTSFK--------GDTAKEAGPAFDFLEKALDKFDDGPFFLGQ-FSLVD 174 (238)
Q Consensus 106 ~~~l~-p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--------~~~~~~~~~~l~~le~~L~~~~~~~~l~G~-~t~aD 174 (238)
+.+++ |.++.+++.+++|+.+.. .+...+...+. ......+.+.++.+|+.|+ +++|++|+ +|+||
T Consensus 79 ~~~l~~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~---~~~~l~G~~~s~AD 155 (201)
T PRK10542 79 DRQLLAPVGSLSRYHTIEWLNYIATELHKGFTPLFRPDTPEEYKPTVRAQLEKKFQYVDEALA---DEQWICGQRFTIAD 155 (201)
T ss_pred ccccCCCCCcHHHHHHHHHHHHHHhhhhhhhhhccCCCChHHHHHHHHHHHHHHHHHHHHHhc---CCCeeeCCCCcHHh
Confidence 77765 667889999999988775 33332222111 1234678889999999998 67899999 99999
Q ss_pred HHHhhHHHHHHHHhhhcCCCcccCCChhHHHHHHHHhcCcchhhcc
Q 026482 175 IAYIPFVDGYQMILSEGFKYDATIGRPKLAAWIEELNKMDVYKQTK 220 (238)
Q Consensus 175 ~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~ 220 (238)
+++++.+.+.... +.+ .+.+|+|.+|++++.++|+|++++
T Consensus 156 i~l~~~~~~~~~~-----~~~-~~~~p~l~~w~~~~~~~p~~k~~~ 195 (201)
T PRK10542 156 AYLFTVLRWAYAV-----KLN-LEGLEHIAAYMQRVAERPAVAAAL 195 (201)
T ss_pred HHHHHHHHHhhcc-----CCC-cccchHHHHHHHHHHcCHHHHHHH
Confidence 9999998876432 333 357999999999999999999998
No 9
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=99.97 E-value=1.1e-30 Score=207.92 Aligned_cols=182 Identities=24% Similarity=0.390 Sum_probs=145.0
Q ss_pred EEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCC----CChhhhhhhcCCCCCCCeEEeCCeEeechHHHHHHHHhcCC
Q 026482 30 RLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQ----DKPAWYKEKVYPSNKVPSLEHNGKIIGESLDLINYVDSNFE 105 (238)
Q Consensus 30 ~Ly~~~~sp~~~~v~~~L~~~gipy~~~~~~v~~~----~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~~~~~ 105 (238)
+||++..||++++++++|+++||+|+ .+.++.. ..+++++. +||.|++|+|+++|.+|+||.+|++||+++++
T Consensus 1 ~Ly~~~~s~~~~~v~~~l~~~gi~~~--~~~v~~~~~~~~~~~~~~~-~nP~g~vP~L~~~g~~l~ES~aI~~yl~~~~~ 77 (210)
T TIGR01262 1 KLYSYWRSSCSYRVRIALALKGIDYE--YVPVNLLRDGEQRSPEFLA-LNPQGLVPTLDIDGEVLTQSLAIIEYLEETYP 77 (210)
T ss_pred CcccCCCCCchHHHHHHHHHCCCCce--EEecccccccccCChhhhh-cCCCCcCCEEEECCEEeecHHHHHHHHHHhCC
Confidence 58999999999999999999999854 4555542 23566775 99999999999999999999999999999998
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhh-hhhhh----hh----hhc--c-----CCcHHHHhhHHHHHHHHhhccCCCCcccCC
Q 026482 106 GPSLLPDDPEKRKFAEELFSYSD-TFIKD----VS----TSF--K-----GDTAKEAGPAFDFLEKALDKFDDGPFFLGQ 169 (238)
Q Consensus 106 ~~~l~p~~~~~~~~~~~~~~~~~-~~~~~----~~----~~~--~-----~~~~~~~~~~l~~le~~L~~~~~~~~l~G~ 169 (238)
+..++|.++.+++++++|..++. ++... .. ... . ....+.+.+.++.||++|+.. +++|++|+
T Consensus 78 ~~~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~-~~~~l~G~ 156 (210)
T TIGR01262 78 DPPLLPADPIKRARVRALALLIACDIHPLNNLRVLQYLREKLGVEEEARNRWYQHWISKGFAALEALLQPH-AGAFCVGD 156 (210)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhcccChhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCEeeCC
Confidence 87899999999999999988775 33211 11 111 0 112345788999999999842 35799999
Q ss_pred -ccHHHHHHhhHHHHHHHHhhhcCCCcccCCChhHHHHHHHHhcCcchhhccc
Q 026482 170 -FSLVDIAYIPFVDGYQMILSEGFKYDATIGRPKLAAWIEELNKMDVYKQTKY 221 (238)
Q Consensus 170 -~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~ 221 (238)
+|+||+++++.+.++... +.. .+++|+|++|+++|.+||++++++.
T Consensus 157 ~~T~ADi~~~~~l~~~~~~-----~~~-~~~~p~l~~~~~~~~~rp~~~~~~~ 203 (210)
T TIGR01262 157 TPTLADLCLVPQVYNAERF-----GVD-LTPYPTLRRIAAALAALPAFQRAHP 203 (210)
T ss_pred CCCHHHHHHHHHHHHHHHc-----CCC-cccchHHHHHHHHHhcCHHHHHhCc
Confidence 999999999999876421 222 3679999999999999999999993
No 10
>PLN02378 glutathione S-transferase DHAR1
Probab=99.97 E-value=2.6e-30 Score=206.19 Aligned_cols=189 Identities=24% Similarity=0.415 Sum_probs=144.7
Q ss_pred eCCCchHHHHHHHHHhcCCCCceeEEeccCCCChhhhhhhcCCCCCCCeEEeCCeEeechHHHHHHHHhcCCCCCCCCCC
Q 026482 34 AYTCPFAQRVWITRNYKGLQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLEHNGKIIGESLDLINYVDSNFEGPSLLPDD 113 (238)
Q Consensus 34 ~~~sp~~~~v~~~L~~~gipy~~~~~~v~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~~~~~~~~l~p~~ 113 (238)
+..||||+||+++|+++|++ ++.+.+++..+++++++ +||.|+||+|++||.+|+||.+|++||++++++..+ .+
T Consensus 17 ~~~~p~~~rv~~~L~e~gl~--~e~~~v~~~~~~~~~l~-inP~G~VPvL~~~~~~l~ES~aI~~YL~~~~~~~~l--~~ 91 (213)
T PLN02378 17 LGDCPFSQRALLTLEEKSLT--YKIHLINLSDKPQWFLD-ISPQGKVPVLKIDDKWVTDSDVIVGILEEKYPDPPL--KT 91 (213)
T ss_pred CCCCcchHHHHHHHHHcCCC--CeEEEeCcccCCHHHHH-hCCCCCCCEEEECCEEecCHHHHHHHHHHhCCCCCC--CC
Confidence 44599999999999999997 56667777778888987 999999999999999999999999999999987655 35
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhh--ccCCcHHHHhhHHHHHHHHhhccCCCCcccCC-ccHHHHHHhhHHHHHHHHhhh
Q 026482 114 PEKRKFAEELFSYSDTFIKDVSTS--FKGDTAKEAGPAFDFLEKALDKFDDGPFFLGQ-FSLVDIAYIPFVDGYQMILSE 190 (238)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~le~~L~~~~~~~~l~G~-~t~aD~~l~~~l~~~~~~~~~ 190 (238)
+.+++.+...... . ...+... ......+.+.+.++.+|+.|+.. +++|++|+ +|+||+++++.+.++......
T Consensus 92 ~~~~a~i~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~-~~~fl~Gd~~T~ADi~l~~~~~~l~~~~~~ 167 (213)
T PLN02378 92 PAEFASVGSNIFG--T-FGTFLKSKDSNDGSEHALLVELEALENHLKSH-DGPFIAGERVSAVDLSLAPKLYHLQVALGH 167 (213)
T ss_pred HHHHHHHHHHHHH--H-HHHHHhcCChhhHHHHHHHHHHHHHHHHHhcC-CCCCcCCCCCchhhHHHHHHHHHHHHHHHH
Confidence 6667766543321 1 1111111 11233457788899999999742 46899999 999999999998877543322
Q ss_pred cCCCcccCCChhHHHHHHHHhcCcchhhcccCCChhhHHHHhc
Q 026482 191 GFKYDATIGRPKLAAWIEELNKMDVYKQTKYFKDPKQLFEYYK 233 (238)
Q Consensus 191 ~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 233 (238)
....+..+.+|+|.+|+++|.+||++++++ +.+...+..|-
T Consensus 168 ~~~~~~~~~~p~l~~w~~~~~~rpa~~~~~--~~~~~~~~~~~ 208 (213)
T PLN02378 168 FKSWSVPESFPHVHNYMKTLFSLDSFEKTK--TEEKYVISGWA 208 (213)
T ss_pred hcCCCchhHhHHHHHHHHHHhcCCCeeccc--CChHHHHHHHH
Confidence 223333467999999999999999999999 88777766554
No 11
>PLN02395 glutathione S-transferase
Probab=99.97 E-value=1.8e-30 Score=207.36 Aligned_cols=183 Identities=23% Similarity=0.341 Sum_probs=141.8
Q ss_pred CeEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCC---CChhhhhhhcCCCCCCCeEEeCCeEeechHHHHHHHHhcC
Q 026482 28 TTRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQ---DKPAWYKEKVYPSNKVPSLEHNGKIIGESLDLINYVDSNF 104 (238)
Q Consensus 28 ~~~Ly~~~~sp~~~~v~~~L~~~gipy~~~~~~v~~~---~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~~~~ 104 (238)
.+|||+.+.| +++|++++|+++|++|+. +.++.. ..++++++ +||.|+||+|+++|.+|+||.+|++||++++
T Consensus 2 ~~~ly~~~~~-~~~rv~~~L~e~gl~~e~--~~v~~~~~~~~~~~~~~-~nP~g~vP~L~~~~~~l~ES~aI~~YL~~~~ 77 (215)
T PLN02395 2 VLKVYGPAFA-SPKRALVTLIEKGVEFET--VPVDLMKGEHKQPEYLA-LQPFGVVPVIVDGDYKIFESRAIMRYYAEKY 77 (215)
T ss_pred eEEEEcCCcC-cHHHHHHHHHHcCCCceE--EEeccccCCcCCHHHHh-hCCCCCCCEEEECCEEEEcHHHHHHHHHHHc
Confidence 5899997654 699999999999998554 445442 34566776 9999999999999999999999999999999
Q ss_pred CC--CCCCCCCHHHHHHHHHHHHhhhh-hh----hhh----hhh---cc------CCcHHHHhhHHHHHHHHhhccCCCC
Q 026482 105 EG--PSLLPDDPEKRKFAEELFSYSDT-FI----KDV----STS---FK------GDTAKEAGPAFDFLEKALDKFDDGP 164 (238)
Q Consensus 105 ~~--~~l~p~~~~~~~~~~~~~~~~~~-~~----~~~----~~~---~~------~~~~~~~~~~l~~le~~L~~~~~~~ 164 (238)
+. ++++|.++.+++.+++|+.+.+. +. ... +.. .. ....+.+.+.++.||+.|+ +++
T Consensus 78 ~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~---~~~ 154 (215)
T PLN02395 78 RSQGPDLLGKTIEERGQVEQWLDVEATSYHPPLLNLTLHILFASKMGFPADEKVIKESEEKLAKVLDVYEARLS---KSK 154 (215)
T ss_pred CCCCcCcCCCChhHHHHHHHHHHHHHHhcCchHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHHHHHHhc---CCc
Confidence 75 36999999999999999887652 21 111 111 01 1224567889999999998 578
Q ss_pred cccCC-ccHHHHHHhhHHHHHHHHhhhcCCCcccCCChhHHHHHHHHhcCcchhhcc
Q 026482 165 FFLGQ-FSLVDIAYIPFVDGYQMILSEGFKYDATIGRPKLAAWIEELNKMDVYKQTK 220 (238)
Q Consensus 165 ~l~G~-~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~ 220 (238)
|++|+ +|+||+++++.+.++..... .....+.+|+|.+|++++.+||++++++
T Consensus 155 ~l~G~~~s~ADi~l~~~~~~~~~~~~---~~~~~~~~p~L~~w~~~~~~rp~~k~~~ 208 (215)
T PLN02395 155 YLAGDFVSLADLAHLPFTEYLVGPIG---KAYLIKDRKHVSAWWDDISSRPAWKEVL 208 (215)
T ss_pred cccCCCcCHHHHHHHHHHHHHhcccc---hhhhhccCchHHHHHHHHHcChHHHHHH
Confidence 99999 99999999998876632111 1122467899999999999999999988
No 12
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=99.97 E-value=2.5e-30 Score=206.62 Aligned_cols=177 Identities=20% Similarity=0.332 Sum_probs=136.9
Q ss_pred eEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCC---ChhhhhhhcCCCCCCCeEEe-----CC--eEeechHHHHH
Q 026482 29 TRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQD---KPAWYKEKVYPSNKVPSLEH-----NG--KIIGESLDLIN 98 (238)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~L~~~gipy~~~~~~v~~~~---~~~~~~~~~~p~~~vP~L~~-----~g--~~l~eS~aI~~ 98 (238)
+|||+.+ +|+|++|+++|+++||+| +.+.++... ..+++++ +||.|+||+|++ || .+|+||.||++
T Consensus 2 ~~Ly~~~-~~~~~~v~~~L~e~gl~~--e~~~v~~~~~~~~~~~~~~-iNP~gkVP~L~~~~~~d~g~~~~L~ES~AI~~ 77 (215)
T PRK13972 2 IDLYFAP-TPNGHKITLFLEEAELDY--RLIKVDLGKGGQFRPEFLR-ISPNNKIPAIVDHSPADGGEPLSLFESGAILL 77 (215)
T ss_pred eEEEECC-CCChHHHHHHHHHcCCCc--EEEEecCcccccCCHHHHh-hCcCCCCCEEEeCCCCCCCCceeEEcHHHHHH
Confidence 7899877 799999999999999985 455555532 2456776 999999999996 45 47999999999
Q ss_pred HHHhcCCCCCCCCCCHHHHHHHHHHHHhhhhhhhhhhhh---c-----------cCCcHHHHhhHHHHHHHHhhccCCCC
Q 026482 99 YVDSNFEGPSLLPDDPEKRKFAEELFSYSDTFIKDVSTS---F-----------KGDTAKEAGPAFDFLEKALDKFDDGP 164 (238)
Q Consensus 99 yL~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~---~-----------~~~~~~~~~~~l~~le~~L~~~~~~~ 164 (238)
||+++++ .+.|.++.+++++++|+.+....+...+.. + .......+.+.++.||+.|+ +++
T Consensus 78 YL~~~~~--~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~---~~~ 152 (215)
T PRK13972 78 YLAEKTG--LFLSHETRERAATLQWLFWQVGGLGPMLGQNHHFNHAAPQTIPYAIERYQVETQRLYHVLNKRLE---NSP 152 (215)
T ss_pred HHHHhcC--CCCCCCHHHHHHHHHHHHHHhhccCcceeeeeeeeccCCCCCchHHHHHHHHHHHHHHHHHHHhc---cCc
Confidence 9999985 367888999999999998876322221110 0 01123467788999999998 679
Q ss_pred cccCC-ccHHHHHHhhHHHHHHHHhhhcCCCcccCCChhHHHHHHHHhcCcchhhcc
Q 026482 165 FFLGQ-FSLVDIAYIPFVDGYQMILSEGFKYDATIGRPKLAAWIEELNKMDVYKQTK 220 (238)
Q Consensus 165 ~l~G~-~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~ 220 (238)
|++|+ +|+||+++++.+..+... +.. .+.+|+|.+|++++.+||+|++++
T Consensus 153 ~l~Gd~~t~ADi~l~~~~~~~~~~-----~~~-~~~~P~l~~w~~r~~~rp~~~~~~ 203 (215)
T PRK13972 153 WLGGENYSIADIACWPWVNAWTRQ-----RID-LAMYPAVKNWHERIRSRPATGQAL 203 (215)
T ss_pred cccCCCCCHHHHHHHHHHHHHhhc-----CCc-chhCHHHHHHHHHHHhCHHHHHHH
Confidence 99999 999999998877544221 223 367999999999999999998887
No 13
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=6.2e-30 Score=203.75 Aligned_cols=177 Identities=27% Similarity=0.506 Sum_probs=141.8
Q ss_pred eEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCC--CChhhhhhhcCCCCCCCeEEeCCe-EeechHHHHHHHHhcCC
Q 026482 29 TRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQ--DKPAWYKEKVYPSNKVPSLEHNGK-IIGESLDLINYVDSNFE 105 (238)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~L~~~gipy~~~~~~v~~~--~~~~~~~~~~~p~~~vP~L~~~g~-~l~eS~aI~~yL~~~~~ 105 (238)
++||+.+.||+|++|+++|.++|++ ++.+.++.. ..+++++. +||.|+||+|+++|. +|+||.+|++||++++|
T Consensus 1 ~~L~~~~~sp~~~kv~l~l~e~g~~--ye~~~v~~~~~~~~~~~~~-~nP~gkVPvL~~~~~~~l~ES~AI~~YL~~~~~ 77 (211)
T COG0625 1 MKLYGSPTSPYSRKVRLALEEKGLP--YEIVLVDLDAEQKPPDFLA-LNPLGKVPALVDDDGEVLTESGAILEYLAERYP 77 (211)
T ss_pred CeeecCCCCcchHHHHHHHHHcCCC--ceEEEeCcccccCCHHHHh-cCCCCCCCEEeeCCCCeeecHHHHHHHHHhhCC
Confidence 5899999999999999999999998 455555554 46677776 999999999997665 99999999999999999
Q ss_pred CCCCCCCCHH---HHHHHHHHHHhhhh-hhhhhh----h----------hccCCcHHHHhhHHHHHHHHhhccCCCCccc
Q 026482 106 GPSLLPDDPE---KRKFAEELFSYSDT-FIKDVS----T----------SFKGDTAKEAGPAFDFLEKALDKFDDGPFFL 167 (238)
Q Consensus 106 ~~~l~p~~~~---~~~~~~~~~~~~~~-~~~~~~----~----------~~~~~~~~~~~~~l~~le~~L~~~~~~~~l~ 167 (238)
+++++|.++. +++.+..|+.+... +...+. . .......+.+.+.++.+|..|+ +++|++
T Consensus 78 ~~~l~p~~~~~r~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~---~~~~l~ 154 (211)
T COG0625 78 GPPLLPADPLARRARALLLWWLFFAASDLHPVIGQRRRALLGSEPELLEAALEAARAEIRALLALLEALLA---DGPYLA 154 (211)
T ss_pred CCCcCCCCchhHHHHHHHHHHHHHHHhcccHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHhc---cCCccc
Confidence 8779998774 77778888887752 222111 1 1122345678999999999998 689999
Q ss_pred CC-ccHHHHHHhhHHHHHHHHhhhcCCCcccCCChhHHHHHHHHhcCcchh
Q 026482 168 GQ-FSLVDIAYIPFVDGYQMILSEGFKYDATIGRPKLAAWIEELNKMDVYK 217 (238)
Q Consensus 168 G~-~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~ 217 (238)
|+ +|+||+++++.+.++... +... +.+|+|.+|++|+.++|+++
T Consensus 155 G~~~tiAD~~~~~~~~~~~~~-----~~~~-~~~p~l~~w~~r~~~rp~~~ 199 (211)
T COG0625 155 GDRFTIADIALAPLLWRLALL-----GEEL-ADYPALKAWYERVLARPAFR 199 (211)
T ss_pred CCCCCHHHHHHHHHHHHhhhc-----Cccc-ccChHHHHHHHHHHcCCchh
Confidence 99 999999999999886432 2232 67999999999999999954
No 14
>PRK11752 putative S-transferase; Provisional
Probab=99.97 E-value=8.7e-29 Score=203.20 Aligned_cols=184 Identities=18% Similarity=0.267 Sum_probs=139.1
Q ss_pred CeEEEeeCCCchHHHHHHHHHhc------CCCCceeEEeccCCC---ChhhhhhhcCCCCCCCeEEeC----CeEeechH
Q 026482 28 TTRLYMAYTCPFAQRVWITRNYK------GLQDEIKLVAFDLQD---KPAWYKEKVYPSNKVPSLEHN----GKIIGESL 94 (238)
Q Consensus 28 ~~~Ly~~~~sp~~~~v~~~L~~~------gipy~~~~~~v~~~~---~~~~~~~~~~p~~~vP~L~~~----g~~l~eS~ 94 (238)
-|+||+.+ ||+|++|+++|+++ |++ ++.+.++... ..+++++ +||.|+||+|+++ |.+|+||.
T Consensus 44 ~~~Ly~~~-s~~~~rV~i~L~e~~~~~~~gl~--ye~~~v~~~~~~~~~~e~~~-iNP~GkVP~Lv~~dg~~~~~L~ES~ 119 (264)
T PRK11752 44 PLQLYSLG-TPNGQKVTIMLEELLALGVKGAE--YDAWLIRIGEGDQFSSGFVE-INPNSKIPALLDRSGNPPIRVFESG 119 (264)
T ss_pred CeEEecCC-CCchHHHHHHHHHHHhccCCCCc--eEEEEecCccccccCHHHHh-hCCCCCCCEEEeCCCCCCeEEEcHH
Confidence 48999865 99999999999997 886 4555555432 3456776 9999999999964 36899999
Q ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHhhhhhhh----hh---hhhccC-------CcHHHHhhHHHHHHHHhhcc
Q 026482 95 DLINYVDSNFEGPSLLPDDPEKRKFAEELFSYSDTFIK----DV---STSFKG-------DTAKEAGPAFDFLEKALDKF 160 (238)
Q Consensus 95 aI~~yL~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~----~~---~~~~~~-------~~~~~~~~~l~~le~~L~~~ 160 (238)
+|++||+++++ +++|.++.+++.+++|+.+...... .+ +..... ....++.+.|+.||+.|+
T Consensus 120 AIl~YL~~~~~--~L~P~~~~era~v~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~le~~L~-- 195 (264)
T PRK11752 120 AILLYLAEKFG--AFLPKDLAARTETLNWLFWQQGSAPFLGGGFGHFYAYAPEKIEYAINRFTMEAKRQLDVLDKQLA-- 195 (264)
T ss_pred HHHHHHHHhcC--CcCCCCHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHhc--
Confidence 99999999997 3899999999999999887653211 11 110011 122457888999999998
Q ss_pred CCCCcccCC-ccHHHHHHhhHHHHHHHHhh-hcCCCcccCCChhHHHHHHHHhcCcchhhcc
Q 026482 161 DDGPFFLGQ-FSLVDIAYIPFVDGYQMILS-EGFKYDATIGRPKLAAWIEELNKMDVYKQTK 220 (238)
Q Consensus 161 ~~~~~l~G~-~t~aD~~l~~~l~~~~~~~~-~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~ 220 (238)
+++|++|+ +|+|||++++.+.++..... ........+.+|+|.+|+++|.+||+|++++
T Consensus 196 -~~~fl~Gd~~TlADi~l~~~l~~l~~~~~~~~~~~~~~~~~P~L~~w~~rv~~rPs~k~~~ 256 (264)
T PRK11752 196 -EHEYIAGDEYTIADIAIWPWYGNLVLGNLYDAAEFLDVGSYKHVQRWAKEIAERPAVKRGR 256 (264)
T ss_pred -cCCCCCCCccCHHHHHHHHHHHHHhhccccccccccCcccCHHHHHHHHHHHhCHHHHHHH
Confidence 67899999 99999999998877643110 0001111367999999999999999999988
No 15
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=5.6e-29 Score=183.94 Aligned_cols=187 Identities=26% Similarity=0.424 Sum_probs=153.3
Q ss_pred CCCeEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCC----CChhhhhhhcCCCCCCCeEEeCCeEeechHHHHHHHH
Q 026482 26 DGTTRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQ----DKPAWYKEKVYPSNKVPSLEHNGKIIGESLDLINYVD 101 (238)
Q Consensus 26 ~~~~~Ly~~~~sp~~~~v~~~L~~~gipy~~~~~~v~~~----~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~ 101 (238)
..+++||.+..|.+++|||++|..+||+| +...|++- .....|++ +||.++||+|+.||.+|+||.||++||+
T Consensus 3 ~~KpiLYSYWrSSCswRVRiALaLK~iDY--ey~PvnLlk~~~q~~~ef~~-iNPm~kVP~L~i~g~tl~eS~AII~YLe 79 (217)
T KOG0868|consen 3 AAKPILYSYWRSSCSWRVRIALALKGIDY--EYKPVNLLKEEDQSDSEFKE-INPMEKVPTLVIDGLTLTESLAIIEYLE 79 (217)
T ss_pred cccchhhhhhcccchHHHHHHHHHcCCCc--ceeehhhhcchhhhhhHHhh-cCchhhCCeEEECCEEeehHHHHHHHHH
Confidence 45789999999999999999999999975 45555552 23456776 9999999999999999999999999999
Q ss_pred hcCCCCCCCCCCHHHHHHHHHHHHhhhhhhh-----hhhhhccCC--------cHHHHhhHHHHHHHHhhccCCCCcccC
Q 026482 102 SNFEGPSLLPDDPEKRKFAEELFSYSDTFIK-----DVSTSFKGD--------TAKEAGPAFDFLEKALDKFDDGPFFLG 168 (238)
Q Consensus 102 ~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~--------~~~~~~~~l~~le~~L~~~~~~~~l~G 168 (238)
+.+|++.|+|.++..|+.++++...+..-.. .++..+.++ ...-+.+-|..||+.|... .++|.+|
T Consensus 80 Et~P~ppLLP~d~~KRA~~r~i~~~i~sgIQPlQNl~vl~~l~ek~~~~~~~W~q~~ItkGF~ALEklL~~~-aGkycvG 158 (217)
T KOG0868|consen 80 ETYPDPPLLPKDPHKRAKARAISLLIASGIQPLQNLSVLKMLNEKEPGYGDQWAQHFITKGFTALEKLLKSH-AGKYCVG 158 (217)
T ss_pred hcCCCCCCCCcCHHHHHHHHHHHHHHHhCCCcchhhHHHHHhcccccchhhHHHHHHHHHhHHHHHHHHHHc-cCCcccC
Confidence 9999999999999999999999887763222 222222211 2346788899999999974 7789999
Q ss_pred C-ccHHHHHHhhHHHHHHHHhhhcCCCcccCCChhHHHHHHHHhcCcchhhcccCCC
Q 026482 169 Q-FSLVDIAYIPFVDGYQMILSEGFKYDATIGRPKLAAWIEELNKMDVYKQTKYFKD 224 (238)
Q Consensus 169 ~-~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~ 224 (238)
| +|+||+.+.+.+... ..+..++ ..||.+.+..+.+.+.|+|+.+- |+
T Consensus 159 DevtiADl~L~pqv~nA-----~rf~vdl-~PYPti~ri~e~l~elpaFq~ah--P~ 207 (217)
T KOG0868|consen 159 DEVTIADLCLPPQVYNA-----NRFHVDL-TPYPTITRINEELAELPAFQAAH--PD 207 (217)
T ss_pred ceeehhhhccchhhhhh-----hhccccC-CcCchHHHHHHHHHhCHHHHhcC--CC
Confidence 9 999999999988655 3345664 68999999999999999999988 55
No 16
>PTZ00057 glutathione s-transferase; Provisional
Probab=99.96 E-value=1.1e-27 Score=189.93 Aligned_cols=182 Identities=19% Similarity=0.227 Sum_probs=135.2
Q ss_pred CCeEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCCChhhh-----h-hhcCCCCCCCeEEeCCeEeechHHHHHHH
Q 026482 27 GTTRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQDKPAWY-----K-EKVYPSNKVPSLEHNGKIIGESLDLINYV 100 (238)
Q Consensus 27 ~~~~Ly~~~~sp~~~~v~~~L~~~gipy~~~~~~v~~~~~~~~~-----~-~~~~p~~~vP~L~~~g~~l~eS~aI~~yL 100 (238)
+.++||+++.++++++||++|+++|++| +.+.++.. .++++ + .+.||.|++|+|++||.+|+||.||++||
T Consensus 3 ~~~~L~y~~~~~~~~~vrl~L~~~gi~y--e~~~~~~~-~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~eS~AI~~YL 79 (205)
T PTZ00057 3 EEIVLYYFDARGKAELIRLIFAYLGIEY--TDKRFGEN-GDAFIEFKNFKKEKDTPFEQVPILEMDNIIFAQSQAIVRYL 79 (205)
T ss_pred CceEEEecCCCcchHHHHHHHHHcCCCe--EEEecccc-chHHHHHHhccccCCCCCCCCCEEEECCEEEecHHHHHHHH
Confidence 3489999999999999999999999985 44444321 22221 1 02799999999999999999999999999
Q ss_pred HhcCCCCCCCCCCHHHHHHHHHHHHhhhhhhhhhhh-----h-ccCCcHHHHhhHHHHHHHHhhccCCCCcccCC-ccHH
Q 026482 101 DSNFEGPSLLPDDPEKRKFAEELFSYSDTFIKDVST-----S-FKGDTAKEAGPAFDFLEKALDKFDDGPFFLGQ-FSLV 173 (238)
Q Consensus 101 ~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~~l~~le~~L~~~~~~~~l~G~-~t~a 173 (238)
+++++ +.+.+..++..++.+.....++...+.. . ......+.+.+.+..||+.|+++ +++|++|+ +|+|
T Consensus 80 a~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~-~~~~l~Gd~~T~A 155 (205)
T PTZ00057 80 SKKYK---ICGESELNEFYADMIFCGVQDIHYKFNNTNLFKQNETTFLNEELPKWSGYFENILKKN-HCNYFVGDNLTYA 155 (205)
T ss_pred HHHcC---CCCCCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCeeeCCcccHH
Confidence 99997 4566666666665555443333221111 0 01123467889999999999852 45899999 9999
Q ss_pred HHHHhhHHHHHHHHhhhcCCCcccCCChhHHHHHHHHhcCcchhhcc
Q 026482 174 DIAYIPFVDGYQMILSEGFKYDATIGRPKLAAWIEELNKMDVYKQTK 220 (238)
Q Consensus 174 D~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~ 220 (238)
|+++++.+.++.... +.+ .+.+|+|.+|++++.++|++++++
T Consensus 156 D~~l~~~~~~~~~~~----~~~-l~~~P~l~~~~~r~~~~P~~k~y~ 197 (205)
T PTZ00057 156 DLAVFNLYDDIETKY----PNS-LKNFPLLKAHNEFISNLPNIKNYI 197 (205)
T ss_pred HHHHHHHHHHHHHhC----hhh-hccChhHHHHHHHHHhChHHHHHH
Confidence 999999888774321 222 368999999999999999999998
No 17
>PRK10387 glutaredoxin 2; Provisional
Probab=99.95 E-value=1e-27 Score=190.81 Aligned_cols=170 Identities=21% Similarity=0.345 Sum_probs=127.1
Q ss_pred eEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCCChhhhhhhcCCCCCCCeEE-eCCeEeechHHHHHHHHhcCCCC
Q 026482 29 TRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLE-HNGKIIGESLDLINYVDSNFEGP 107 (238)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~L~~~gipy~~~~~~v~~~~~~~~~~~~~~p~~~vP~L~-~~g~~l~eS~aI~~yL~~~~~~~ 107 (238)
||||++..||+|++|+++|+++||+ ++.+.++....... . +.||.|+||+|+ +||.+|+||.+|++||+++++++
T Consensus 1 ~~Ly~~~~sp~~~kv~~~L~~~gi~--y~~~~~~~~~~~~~-~-~~~p~~~VPvL~~~~g~~l~eS~aI~~yL~~~~~~~ 76 (210)
T PRK10387 1 MKLYIYDHCPFCVKARMIFGLKNIP--VELIVLANDDEATP-I-RMIGQKQVPILQKDDGSYMPESLDIVHYIDELDGKP 76 (210)
T ss_pred CEEEeCCCCchHHHHHHHHHHcCCC--eEEEEcCCCchhhH-H-HhcCCcccceEEecCCeEecCHHHHHHHHHHhCCCc
Confidence 6899999999999999999999998 55565654433222 3 489999999995 88999999999999999999875
Q ss_pred CCCCCCHHHHHHHHHHHHhhhhhh-hhhhhhcc----------------------------------CCcHHHHhhHHHH
Q 026482 108 SLLPDDPEKRKFAEELFSYSDTFI-KDVSTSFK----------------------------------GDTAKEAGPAFDF 152 (238)
Q Consensus 108 ~l~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----------------------------------~~~~~~~~~~l~~ 152 (238)
.+.+. +++.++.|+.+..... ..++..+. ....+.+++.|+.
T Consensus 77 ~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 153 (210)
T PRK10387 77 LLTGK---RSPAIEEWLRKVFGYLNKLLYPRFAKADLPEFATPSARQYFIDKKEASIGDFDALLAHTPGLIKEINADLRA 153 (210)
T ss_pred cCCCc---ccHHHHHHHHHHHHHhhcchhcccccCCCcccCCHHHHHHHHHhHHhccCCHHHHHhcCHHHHHHHHHHHHH
Confidence 45421 4566777766554211 11111100 1224567888999
Q ss_pred HHHHhhccCCCCcccCC-ccHHHHHHhhHHHHHHHHhhhcCCCcccCCChhHHHHHHHHhcCcch
Q 026482 153 LEKALDKFDDGPFFLGQ-FSLVDIAYIPFVDGYQMILSEGFKYDATIGRPKLAAWIEELNKMDVY 216 (238)
Q Consensus 153 le~~L~~~~~~~~l~G~-~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~ 216 (238)
+|+.|+ + +|++|+ +|+||+++++.+.++... .+. +.+|+|.+|++||.+||++
T Consensus 154 le~~L~---~-~~l~G~~~s~ADi~l~~~l~~~~~~----~~~---~~~p~l~~w~~r~~~r~~~ 207 (210)
T PRK10387 154 LDPLIV---K-PNAVNGELSTDDIHLFPILRNLTLV----KGI---EWPPRVADYRDNMSKKTQV 207 (210)
T ss_pred HHHHhc---C-ccccCCCCCHHHHHHHHHHhcceee----cCC---CCCHHHHHHHHHHHHHhCC
Confidence 999997 5 999999 999999999999887542 122 2359999999999999986
No 18
>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=4.1e-26 Score=183.00 Aligned_cols=185 Identities=23% Similarity=0.390 Sum_probs=149.9
Q ss_pred CCeEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccC---CCChhhhhhhcCCCCCCCeEEeCCeEeechHHHHHHHHhc
Q 026482 27 GTTRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDL---QDKPAWYKEKVYPSNKVPSLEHNGKIIGESLDLINYVDSN 103 (238)
Q Consensus 27 ~~~~Ly~~~~sp~~~~v~~~L~~~gipy~~~~~~v~~---~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~~~ 103 (238)
+.++||++..||.|++|.+++.++|++ ++.+.++. ...+++++. +||.|+||+|+|+|..++||.||+.||.++
T Consensus 1 ~~~~ly~~~~s~~~r~vl~~~~~~~l~--~e~~~v~~~~ge~~~pefl~-~nP~~kVP~l~d~~~~l~eS~AI~~Yl~~k 77 (226)
T KOG0867|consen 1 MKLKLYGHLGSPPARAVLIAAKELGLE--VELKPVDLVKGEQKSPEFLK-LNPLGKVPALEDGGLTLWESHAILRYLAEK 77 (226)
T ss_pred CCceEeecCCCcchHHHHHHHHHcCCc--eeEEEeeccccccCCHHHHh-cCcCCCCCeEecCCeEEeeHHHHHHHHHHH
Confidence 358899999999999999999999997 55554444 244566775 999999999999999999999999999999
Q ss_pred CC-CCC-CCCCCHHHHHHHHHHHHhhhhhh-hhh-----hhh-c---------cCCcHHHHhhHHHHHHHHhhccCCCCc
Q 026482 104 FE-GPS-LLPDDPEKRKFAEELFSYSDTFI-KDV-----STS-F---------KGDTAKEAGPAFDFLEKALDKFDDGPF 165 (238)
Q Consensus 104 ~~-~~~-l~p~~~~~~~~~~~~~~~~~~~~-~~~-----~~~-~---------~~~~~~~~~~~l~~le~~L~~~~~~~~ 165 (238)
|. ... ++|.+..+++.+++|+.+.++.+ ... +.. . .....+.+++.++.+|+.|. ++.|
T Consensus 78 y~~~~~~l~p~~~~~ra~v~~~l~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~---~~~y 154 (226)
T KOG0867|consen 78 YGPLGGILLPKDLKERAIVDQWLEFENGVLDPVTFERPILAPLLVGLPLNPTAVKELEAKLRKALDNLERFLK---TQVY 154 (226)
T ss_pred cCCCCcccCCcCHHHHHHHHHHHHhhhcccccccccceeeecceecccCcchhhHHHHHHHHHHHHHHHHHHc---cCCc
Confidence 86 334 89999999999999998877433 321 111 1 12345789999999999999 6899
Q ss_pred ccCC-ccHHHHHHhhHHHHHHHHhhhcCCCcccCCChhHHHHHHHHhcCcchhhcc
Q 026482 166 FLGQ-FSLVDIAYIPFVDGYQMILSEGFKYDATIGRPKLAAWIEELNKMDVYKQTK 220 (238)
Q Consensus 166 l~G~-~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~ 220 (238)
+.|+ +|+||+.+.+.+..+.. .........++|++.+|++++.++|+++++.
T Consensus 155 l~g~~~tlADl~~~~~~~~~~~---~~~~~~~~~~~p~v~~W~~~~~~~P~~~e~~ 207 (226)
T KOG0867|consen 155 LAGDQLTLADLSLASTLSQFQG---KFATEKDFEKYPKVARWYERIQKRPAYEEAN 207 (226)
T ss_pred ccCCcccHHHHHHhhHHHHHhH---hhhhhhhhhhChHHHHHHHHHHhCccHHHHH
Confidence 9999 99999999999988732 1112233578999999999999999998877
No 19
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=99.94 E-value=4e-26 Score=181.48 Aligned_cols=169 Identities=20% Similarity=0.323 Sum_probs=123.2
Q ss_pred EEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCCChhhhhhhcCCCCCCCeEE-eCCeEeechHHHHHHHHhcCCCCC
Q 026482 30 RLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLE-HNGKIIGESLDLINYVDSNFEGPS 108 (238)
Q Consensus 30 ~Ly~~~~sp~~~~v~~~L~~~gipy~~~~~~v~~~~~~~~~~~~~~p~~~vP~L~-~~g~~l~eS~aI~~yL~~~~~~~~ 108 (238)
|||+...||||+||+++|.++|++| +.+.+........ . +.||.|++|+|+ +||.+++||.+|++||+++++.+.
T Consensus 1 ~Ly~~~~sp~~~kvr~~L~~~gl~~--e~~~~~~~~~~~~-~-~~np~g~vP~l~~~~g~~l~es~~I~~yL~~~~~~~~ 76 (209)
T TIGR02182 1 KLYIYDHCPFCVRARMIFGLKNIPV--EKHVLLNDDEETP-I-RMIGAKQVPILQKDDGRAMPESLDIVAYFDKLDGEPL 76 (209)
T ss_pred CeecCCCCChHHHHHHHHHHcCCCe--EEEECCCCcchhH-H-HhcCCCCcceEEeeCCeEeccHHHHHHHHHHhCCCcc
Confidence 5899999999999999999999985 4555544333222 3 489999999998 899999999999999999997654
Q ss_pred CCCCCHHHHHHHHHHHHhhhhhhh-hhhhhcc----------------------------------CCcHHHHhhHHHHH
Q 026482 109 LLPDDPEKRKFAEELFSYSDTFIK-DVSTSFK----------------------------------GDTAKEAGPAFDFL 153 (238)
Q Consensus 109 l~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----------------------------------~~~~~~~~~~l~~l 153 (238)
+.|. .++.+..|+.+...+.. .+...+. ......+++.++.+
T Consensus 77 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~l 153 (209)
T TIGR02182 77 LTGK---VSPEIEAWLRKVTGYANKLLLPRFAKSDLPEFATQSARKYFTDKKEASAGNFSALLNHTPGLLEEINADLEEL 153 (209)
T ss_pred CCCC---ChHHHHHHHHHHHHHhhhhhccccccCCCcccCCHHHHHHHHHHHHHhcCCHHHHHccCHHHHHHHHHHHHHH
Confidence 4332 23445555554442221 1111100 12335678899999
Q ss_pred HHHhhccCCCCcccCCccHHHHHHhhHHHHHHHHhhhcCCCcccCCCh-hHHHHHHHHhcCcch
Q 026482 154 EKALDKFDDGPFFLGQFSLVDIAYIPFVDGYQMILSEGFKYDATIGRP-KLAAWIEELNKMDVY 216 (238)
Q Consensus 154 e~~L~~~~~~~~l~G~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~p-~l~~~~~~~~~~p~~ 216 (238)
|+.|+ +++|++|++|+||+++++.+.++.... +. .+| +|.+|++||++++++
T Consensus 154 e~~L~---~~~~l~g~~TiADi~l~~~l~~~~~~~----~~----~~p~~l~~w~~Ri~ar~~~ 206 (209)
T TIGR02182 154 DKLID---GPNAVNGELSEDDILVFPLLRNLTLVA----GI----NWPSRVADYLDNMSKKSKV 206 (209)
T ss_pred HHHHh---CccccCCCCCHHHHHHHHHhcCeeeec----CC----CCChHHHHHHHHHHHHhCC
Confidence 99998 789995559999999999998764321 11 256 999999999999876
No 20
>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.2e-24 Score=168.12 Aligned_cols=183 Identities=20% Similarity=0.267 Sum_probs=149.6
Q ss_pred CCeEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCCChhhhhhhcCCCCCCCeEEeCCeEeechHHHHHHHHhcCCC
Q 026482 27 GTTRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLEHNGKIIGESLDLINYVDSNFEG 106 (238)
Q Consensus 27 ~~~~Ly~~~~sp~~~~v~~~L~~~gipy~~~~~~v~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~~~~~~ 106 (238)
+.+||++++..+.+..+|+++++.|++ |+...+...+.-+.++. ..|+|++|+|..||..|.+|.||++||+++++
T Consensus 2 ~~ykL~Yf~~RG~ae~iR~lf~~a~v~--fEd~r~~~~~~w~~~K~-~~pfgqlP~l~vDg~~i~QS~AI~RyLArk~g- 77 (206)
T KOG1695|consen 2 PPYKLTYFNIRGLAEPIRLLFAYAGVS--FEDKRITMEDAWEELKD-KMPFGQLPVLEVDGKKLVQSRAILRYLARKFG- 77 (206)
T ss_pred CceEEEecCcchhHHHHHHHHHhcCCC--cceeeeccccchhhhcc-cCCCCCCCEEeECCEeeccHHHHHHHHHHHhC-
Confidence 358999999999999999999999998 55555555442122232 46999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhhhhhhhhhhhhc-----cC--------CcHHHHhhHHHHHHHHhhccCCCCcccCC-ccH
Q 026482 107 PSLLPDDPEKRKFAEELFSYSDTFIKDVSTSF-----KG--------DTAKEAGPAFDFLEKALDKFDDGPFFLGQ-FSL 172 (238)
Q Consensus 107 ~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~--------~~~~~~~~~l~~le~~L~~~~~~~~l~G~-~t~ 172 (238)
+.|.++.+.+.++.+.+.+.+++..++... .+ ...+...+.+..+++.|+.+ ++.||+|| +|+
T Consensus 78 --l~Gkt~~E~a~vD~i~d~~~D~~~~~~~~~~~~~~~g~~~~~~~~~~~Pa~~~~~~~~~~~L~~~-~sgflvGd~lT~ 154 (206)
T KOG1695|consen 78 --LAGKTEEEEAWVDMIVDQFKDFRWEIFRQPYTAPEAGKSEEELDKLYLPAKPKYFKILEKILKKN-KSGFLVGDKLTW 154 (206)
T ss_pred --cCCCCHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhhccchhhhhhhhccchHHHHHHHHHHHHhC-CCCeeecCcccH
Confidence 999999999999999999888776633222 11 23346678899999999974 66799999 999
Q ss_pred HHHHHhhHHHHHHHHhhhcCCCcccCCChhHHHHHHHHhcCcchhhcc
Q 026482 173 VDIAYIPFVDGYQMILSEGFKYDATIGRPKLAAWIEELNKMDVYKQTK 220 (238)
Q Consensus 173 aD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~ 220 (238)
||+.++..+..+... ...+..+.+|+|.++.+++.++|.+++.+
T Consensus 155 aDl~i~e~l~~l~~~----~~~~~~~~~P~L~a~~~kv~~~p~ik~~i 198 (206)
T KOG1695|consen 155 ADLVIAEHLDTLEEL----LDPSALDHFPKLKAFKERVSSIPNIKKYL 198 (206)
T ss_pred HHHHHHHHHHHHHHh----cCchhhccChHHHHHHHHHhcCchHHHHH
Confidence 999999999888653 23444567899999999999999999988
No 21
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=99.92 E-value=1.3e-23 Score=159.80 Aligned_cols=195 Identities=20% Similarity=0.391 Sum_probs=158.5
Q ss_pred CCchHHHHHHHHHhcCCCCceeEEeccCCCChhhhhhhcCCCCCCCeEEeCCeEeechHHHHHHHHhcCCCCCCCC-CCH
Q 026482 36 TCPFAQRVWITRNYKGLQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLEHNGKIIGESLDLINYVDSNFEGPSLLP-DDP 114 (238)
Q Consensus 36 ~sp~~~~v~~~L~~~gipy~~~~~~v~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~~~~~~~~l~p-~~~ 114 (238)
.|||||++.+.|.++|++ +.+..||+..+|+|++. +.|.+++|+|..|+..++||..|.+.|.+.++.+.+.- ..+
T Consensus 20 dcpf~qr~~m~L~~k~~~--f~vttVd~~~kp~~f~~-~sp~~~~P~l~~d~~~~tDs~~Ie~~Lee~l~~p~~~~~~~~ 96 (221)
T KOG1422|consen 20 DCPFCQRLFMTLELKGVP--FKVTTVDLSRKPEWFLD-ISPGGKPPVLKFDEKWVTDSDKIEEFLEEKLPPPKLPTLAPP 96 (221)
T ss_pred CChhHHHHHHHHHHcCCC--ceEEEeecCCCcHHHHh-hCCCCCCCeEEeCCceeccHHHHHHHHHHhcCCCCCcccCCH
Confidence 599999999999999998 56666778889999997 99999999999999999999999999999998775532 233
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhccCCcHHHHhhHHHHHHHHhhccCCCCcccCC-ccHHHHHHhhHHHHHHHHhhhcCC
Q 026482 115 EKRKFAEELFSYSDTFIKDVSTSFKGDTAKEAGPAFDFLEKALDKFDDGPFFLGQ-FSLVDIAYIPFVDGYQMILSEGFK 193 (238)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~~l~G~-~t~aD~~l~~~l~~~~~~~~~~~~ 193 (238)
+.......+...+..|+..--+.-.+.....+-..+..||++|..-..++||.|+ +|.|||.|.+-|+.++.....+.+
T Consensus 97 E~asag~diF~kF~~fi~ksk~~~n~~~e~~Ll~~L~~Ld~yL~sp~~~~Fl~Gd~lt~aDcsLlPKL~~i~va~k~yk~ 176 (221)
T KOG1422|consen 97 ESASAGSDIFAKFSAFIKKSKDAANDGLEKALLKELEKLDDYLKSPSRRKFLDGDKLTLADCSLLPKLHHIKVAAKHYKN 176 (221)
T ss_pred HHHhhHHHHHHHHHHHHhCchhhccchHHHHHHHHHHHHHHHhcCccCCccccCCeeeeehhhhchhHHHHHHHHHHhcC
Confidence 3333333333333333222122222333456778889999999952268999999 999999999999999999999989
Q ss_pred CcccCCChhHHHHHHHHhcCcchhhcccCCChhhHHHHhccc
Q 026482 194 YDATIGRPKLAAWIEELNKMDVYKQTKYFKDPKQLFEYYKIP 235 (238)
Q Consensus 194 ~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 235 (238)
+++.+..+.|++|+.++.++.+|..++ +..+.+..+|+..
T Consensus 177 ~~IP~~lt~V~rYl~~~ya~d~F~~tc--p~d~ei~~~y~~~ 216 (221)
T KOG1422|consen 177 FEIPASLTGVWRYLKNAYARDEFTNTC--PADQEIILAYAPV 216 (221)
T ss_pred CCCchhhhHHHHHHHHHHhHHHhhcCC--chHHHHHHhhhhh
Confidence 999999999999999999999999999 9999999999874
No 22
>KOG4420 consensus Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) [Function unknown]
Probab=99.92 E-value=2.4e-24 Score=168.31 Aligned_cols=199 Identities=20% Similarity=0.318 Sum_probs=143.1
Q ss_pred CeEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCC---ChhhhhhhcCCCCCCCeEEeCCeEeechHHHHHHHHhcC
Q 026482 28 TTRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQD---KPAWYKEKVYPSNKVPSLEHNGKIIGESLDLINYVDSNF 104 (238)
Q Consensus 28 ~~~Ly~~~~sp~~~~v~~~L~~~gipy~~~~~~v~~~~---~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~~~~ 104 (238)
.+.||+++.|--+||||++++++||. ++-++|++.. .++|+.. +||.|.||||.++..+|.++..|+.|+.+.|
T Consensus 26 ~~vLyhhpysf~sQkVrlvi~EK~id--~~~y~V~l~~geh~epwFmr-lNp~gevPVl~~g~~II~d~tqIIdYvErtf 102 (325)
T KOG4420|consen 26 SLVLYHHPYSFSSQKVRLVIAEKGID--CEEYDVSLPQGEHKEPWFMR-LNPGGEVPVLIHGDNIISDYTQIIDYVERTF 102 (325)
T ss_pred cceeeecCcccccceeeeehhhcccc--cceeeccCccccccCchhee-cCCCCCCceEecCCeecccHHHHHHHHHHhh
Confidence 39999999998899999999999994 7888888754 4689997 9999999999999999999999999999998
Q ss_pred C-CCCCCCC-CHHHHHHHHHHHHhhhh-----hhh-----------hh---hhhc-------------------------
Q 026482 105 E-GPSLLPD-DPEKRKFAEELFSYSDT-----FIK-----------DV---STSF------------------------- 138 (238)
Q Consensus 105 ~-~~~l~p~-~~~~~~~~~~~~~~~~~-----~~~-----------~~---~~~~------------------------- 138 (238)
- +..|.|+ +..+..++.++....+. +.. +. +...
T Consensus 103 ~ger~l~pe~~S~~~d~~l~~e~~l~~lpm~~~t~g~~lh~eL~~~s~iP~~~~iR~~~~k~~~~v~~l~~~e~pdla~a 182 (325)
T KOG4420|consen 103 TGERVLMPEVGSLQHDRVLQYEELLDALPMDAYTHGCILHPELTTDSMIPKYAEIRRHLAKATTDVMKLDHEEEPDLAEA 182 (325)
T ss_pred cccccccccccccccHHHHHHHHHHHhcCcchhhccccccchhhccccCcccHHHHHHHHHHHHHHHHHHhhcCchhhHH
Confidence 4 4556663 11122222222222221 000 00 0000
Q ss_pred -------------c-------CCcHHHHhhHHHHHHHHhhccC-CCCcccCC-ccHHHHHHhhHHHHHHHHhhhcCCCcc
Q 026482 139 -------------K-------GDTAKEAGPAFDFLEKALDKFD-DGPFFLGQ-FSLVDIAYIPFVDGYQMILSEGFKYDA 196 (238)
Q Consensus 139 -------------~-------~~~~~~~~~~l~~le~~L~~~~-~~~~l~G~-~t~aD~~l~~~l~~~~~~~~~~~~~~~ 196 (238)
+ ....+.+...|+.+|.-|+..+ -..||+|+ +|+||+.+.++|+++...+-. ...|
T Consensus 183 y~akqkkl~~kl~~hdd~s~lkkild~l~~~Ld~VEteLe~r~~~~~wL~G~efslADVsLg~~LhRL~~Lg~e--~~yw 260 (325)
T KOG4420|consen 183 YLAKQKKLMAKLLEHDDVSYLKKILDELAMVLDQVETELEKRKLCELWLCGCEFSLADVSLGATLHRLKFLGLE--KKYW 260 (325)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhccccceeeccccchHHHHHHHHHHHHHHHcccH--HHhc
Confidence 0 0122455667777777777322 25799999 999999999999999765321 2222
Q ss_pred c-CCChhHHHHHHHHhcCcchhhcccCCChhhHHHHhc
Q 026482 197 T-IGRPKLAAWIEELNKMDVYKQTKYFKDPKQLFEYYK 233 (238)
Q Consensus 197 ~-~~~p~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 233 (238)
. .+.|||..|++|++.|++|++++ ++...+..|+.
T Consensus 261 ~~gsrpnle~Yf~rvrrR~sf~kvl--g~~fnilr~~~ 296 (325)
T KOG4420|consen 261 EDGSRPNLESYFERVRRRFSFRKVL--GDIFNILRFRL 296 (325)
T ss_pred ccCCCccHHHHHHHHHhhhHHHHhh--hhHHHHHHHHH
Confidence 2 46799999999999999999999 88777766543
No 23
>PLN02907 glutamate-tRNA ligase
Probab=99.87 E-value=5.7e-21 Score=174.21 Aligned_cols=155 Identities=17% Similarity=0.270 Sum_probs=127.4
Q ss_pred eEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCCChhhhhhhcCCCCCCCeEE-eCCeEeechHHHHHHHHhcCCCC
Q 026482 29 TRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLE-HNGKIIGESLDLINYVDSNFEGP 107 (238)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~L~~~gipy~~~~~~v~~~~~~~~~~~~~~p~~~vP~L~-~~g~~l~eS~aI~~yL~~~~~~~ 107 (238)
++||+.+.|+ +.++.++|++.|++|+ +.. .+|.|++|+|+ +||..|+||.||++||++.+++.
T Consensus 3 ~kLy~~~~S~-~~~v~~~L~~lgv~~e--~~~-------------~~p~GkVPvLv~ddG~~L~ES~AIl~YLa~~~p~~ 66 (722)
T PLN02907 3 AKLSFPPDSP-PLAVIAAAKVAGVPLT--IDP-------------SLKSGSAPTLLFSSGEKLTGTNVLLRYIARSASLP 66 (722)
T ss_pred EEEEECCCCC-hHHHHHHHHHcCCCcE--Eee-------------cCCCCCCcEEEECCCCEEECHHHHHHHHHHhCCCc
Confidence 8899998774 6789999999999854 432 36899999999 68899999999999999999888
Q ss_pred CCCCCCHHHHHHHHHHHHhhhhhhhhhhhhccCCcHHHHhhHHHHHHHHhhccCCCCcccCC-ccHHHHHHhhHHHHHHH
Q 026482 108 SLLPDDPEKRKFAEELFSYSDTFIKDVSTSFKGDTAKEAGPAFDFLEKALDKFDDGPFFLGQ-FSLVDIAYIPFVDGYQM 186 (238)
Q Consensus 108 ~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~~l~G~-~t~aD~~l~~~l~~~~~ 186 (238)
.|+|.++.+++.+++|+.+...+.. ...+.+.++.||++|+ +++||+|+ +|+||+++++.+.....
T Consensus 67 ~L~p~d~~erAqV~qWL~~~~~~~~----------~~~l~~~L~~LE~~L~---~rtYLvGd~lTLADIaL~~~L~~~~~ 133 (722)
T PLN02907 67 GFYGQDAFESSQVDEWLDYAPTFSS----------GSEFENACEYVDGYLA---SRTFLVGYSLTIADIAIWSGLAGSGQ 133 (722)
T ss_pred CCCCCCHHHHHHHHHHHHHHhhccc----------HHHHHHHHHHHHHHhc---cCCeecCCCCCHHHHHHHHHHHhhhh
Confidence 8999999999999999988764321 1356788999999998 67899999 99999999998865421
Q ss_pred HhhhcCCCcccCCChhHHHHHHHHhcCcc
Q 026482 187 ILSEGFKYDATIGRPKLAAWIEELNKMDV 215 (238)
Q Consensus 187 ~~~~~~~~~~~~~~p~l~~~~~~~~~~p~ 215 (238)
.. ........+|+|.+|++++.++|+
T Consensus 134 ~~---~~~~~~~~yPnL~RW~erI~arPs 159 (722)
T PLN02907 134 RW---ESLRKSKKYQNLVRWFNSISAEYS 159 (722)
T ss_pred hh---hcccccccCHHHHHHHHHHHhCCC
Confidence 11 122224679999999999999999
No 24
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=99.81 E-value=3.1e-19 Score=122.66 Aligned_cols=88 Identities=38% Similarity=0.668 Sum_probs=76.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCeEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCCChhhhhhhcCCCCCCCeEEeC-C
Q 026482 9 LPPVLDSKSEQPPPPLFDGTTRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLEHN-G 87 (238)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~Ly~~~~sp~~~~v~~~L~~~gipy~~~~~~v~~~~~~~~~~~~~~p~~~vP~L~~~-g 87 (238)
.++|++.+++ +++..++.++||+.+.||+|++++++|+++|++ ++.+.++....++++.+ .||.+++|+|+++ |
T Consensus 1 ~~~~~~~~~~--~~~~~~~~~~Ly~~~~sp~~~kv~~~L~~~gl~--~~~~~v~~~~~~~~~~~-~np~~~vPvL~~~~g 75 (89)
T cd03055 1 SSKHLAKGSA--EPPPVPGIIRLYSMRFCPYAQRARLVLAAKNIP--HEVININLKDKPDWFLE-KNPQGKVPALEIDEG 75 (89)
T ss_pred CccccccCCC--CCCCCCCcEEEEeCCCCchHHHHHHHHHHcCCC--CeEEEeCCCCCcHHHHh-hCCCCCcCEEEECCC
Confidence 3688998888 666799999999999999999999999999997 55566666556666776 9999999999965 8
Q ss_pred eEeechHHHHHHHH
Q 026482 88 KIIGESLDLINYVD 101 (238)
Q Consensus 88 ~~l~eS~aI~~yL~ 101 (238)
..++||.+|++||+
T Consensus 76 ~~l~eS~aI~~yLe 89 (89)
T cd03055 76 KVVYESLIICEYLD 89 (89)
T ss_pred CEEECHHHHHHhhC
Confidence 99999999999985
No 25
>KOG2903 consensus Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=2.4e-19 Score=140.47 Aligned_cols=212 Identities=23% Similarity=0.296 Sum_probs=154.6
Q ss_pred CcccccccCCCCCCCCCCCCCCCCCCCCeEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccC-CCChhhhhh-------
Q 026482 1 MASVVYENLPPVLDSKSEQPPPPLFDGTTRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDL-QDKPAWYKE------- 72 (238)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ly~~~~sp~~~~v~~~L~~~gipy~~~~~~v~~-~~~~~~~~~------- 72 (238)
+++|+++.+|+.+..-.| +++++.||....|||++|+.+.+..+|+.--+.+..+.+ .+...|.-.
T Consensus 16 ~~ssfr~~iSkd~~~~~p------akgryhLYvslaCPWAhRtLi~r~LKGL~~~i~~s~v~~~~d~~gW~F~~~~~~~n 89 (319)
T KOG2903|consen 16 QASSFRETISKDHPIFKP------AKGRYHLYVSLACPWAHRTLIVRALKGLEPAIGVSVVHWHLDDKGWRFLDEHIIIN 89 (319)
T ss_pred eecccccccCCCCCccCC------CCceEEEEEeccCcHHHHHHHHHHHcCccccceeEEeccccCCCcccCCCcccCCC
Confidence 578999999996665444 569999999999999999999999999864444444443 111111100
Q ss_pred -----------------------hcCC----CCCCCeEEeC---CeEeechHHHHHHHHhcC---------CCCCCCCCC
Q 026482 73 -----------------------KVYP----SNKVPSLEHN---GKIIGESLDLINYVDSNF---------EGPSLLPDD 113 (238)
Q Consensus 73 -----------------------~~~p----~~~vP~L~~~---g~~l~eS~aI~~yL~~~~---------~~~~l~p~~ 113 (238)
.-+| .-+||+|.|. ..+-.||..|++.+...| +...|+|.+
T Consensus 90 Ds~~l~~~~d~~~g~k~l~elY~~~~p~Y~grfTVPVLWD~k~ktIVnNES~eIIr~fNs~f~ef~~~~e~~~lDL~P~~ 169 (319)
T KOG2903|consen 90 DSERLGVTPDPLNGAKRLRELYYIASPNYTGRFTVPVLWDLKTKTIVNNESSEIIRMFNSAFDEFNGIAENPVLDLYPSS 169 (319)
T ss_pred chhcccCCCcccccchhHHHHHhhcCCCCCceEEEEEEEccccceeecCchHHHHHHHhhhhhhhhccccCCccccCCHH
Confidence 0112 2359999963 456799999999998333 234578765
Q ss_pred HHHHHHHHHHHHhhh-hhhhhhhhhc----c---CCcHHHHhhHHHHHHHHhhccCCCCcccCC-ccHHHHHHhhHHHHH
Q 026482 114 PEKRKFAEELFSYSD-TFIKDVSTSF----K---GDTAKEAGPAFDFLEKALDKFDDGPFFLGQ-FSLVDIAYIPFVDGY 184 (238)
Q Consensus 114 ~~~~~~~~~~~~~~~-~~~~~~~~~~----~---~~~~~~~~~~l~~le~~L~~~~~~~~l~G~-~t~aD~~l~~~l~~~ 184 (238)
.++.|+.+..|+. .....++..- . +.....+-+.|+.+|+.|+++ -+.|++|+ +|.||+.|++.+.++
T Consensus 170 --L~~~Ide~N~wvy~~INNGVYk~GFA~~~e~Ye~~V~~lfe~LDr~E~vL~~~-~~~f~~G~~LTeaDirLy~TiIRF 246 (319)
T KOG2903|consen 170 --LRAQIDETNSWVYDKINNGVYKCGFAEKQEAYEEEVNQLFEALDRCEDVLGKN-RKYFLCGDTLTEADIRLYTTIIRF 246 (319)
T ss_pred --HHHHHhhhhceecccccCceeeeccccccchHHHHHHHHHHHHHHHHHHHhcc-cceEeeccccchhheeeeeeEEee
Confidence 5678999999888 4445554332 1 233467788899999999963 33499999 999999999999999
Q ss_pred HHHhhhcCCCcc---cCCChhHHHHHHHHhc-Ccchhhccc
Q 026482 185 QMILSEGFKYDA---TIGRPKLAAWIEELNK-MDVYKQTKY 221 (238)
Q Consensus 185 ~~~~~~~~~~~~---~~~~p~l~~~~~~~~~-~p~~~~~~~ 221 (238)
..+....+..+. +++||+|..|..++.. .|+|+.|+.
T Consensus 247 D~VY~~hFKCn~~~ir~~Yp~l~~~lk~iY~~~~~~~~Ttd 287 (319)
T KOG2903|consen 247 DEVYVQHFKCNKKTIRDEYPNLHNWLKNIYWNIPGFSSTTD 287 (319)
T ss_pred hhhhheeeecchhhhhccCcHHHHHHHHHHhhccchhhccc
Confidence 877655555433 3689999999999998 999999993
No 26
>COG0435 ECM4 Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=5.8e-19 Score=139.59 Aligned_cols=218 Identities=23% Similarity=0.333 Sum_probs=156.9
Q ss_pred CcccccccCCCCCCCCCCCCCCCCCCCCeEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccC-CCChhh----------
Q 026482 1 MASVVYENLPPVLDSKSEQPPPPLFDGTTRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDL-QDKPAW---------- 69 (238)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ly~~~~sp~~~~v~~~L~~~gipy~~~~~~v~~-~~~~~~---------- 69 (238)
++|++++.|+.....+.- .=.+.++++.||.+-.||+++|..++-+++|+.--+.+..|.. .+...|
T Consensus 26 ~~s~fR~~i~~d~~~g~~--~f~~e~GRYhLYvslaCPWAHRTLI~R~LkgLE~~Isvsvv~~~m~~~GW~F~~~~~g~t 103 (324)
T COG0435 26 SSSQFRNWITADGPPGTG--GFKAEKGRYHLYVSLACPWAHRTLIFRALKGLEPVISVSVVHPLMDENGWTFDPEFPGAT 103 (324)
T ss_pred ccchhhceeecCCCCCcC--CcCCCCCeEEEEEEecCchHHHHHHHHHHhcccccceEEEecccccCCCceEcCCCCCCC
Confidence 357788888866655311 1123789999999999999999999999999854444444443 111111
Q ss_pred -------------hhhhcCC----CCCCCeEEeCC---eEeechHHHHHHHHhcCC-----CCCCCCCCHHHHHHHHHHH
Q 026482 70 -------------YKEKVYP----SNKVPSLEHNG---KIIGESLDLINYVDSNFE-----GPSLLPDDPEKRKFAEELF 124 (238)
Q Consensus 70 -------------~~~~~~p----~~~vP~L~~~g---~~l~eS~aI~~yL~~~~~-----~~~l~p~~~~~~~~~~~~~ 124 (238)
+.. -.| .-+||+|.|.. .+-.||..|++.+...|. ...++|.+ .+..|+.+.
T Consensus 104 ~dpl~g~~~L~~~Y~~-adP~YsgRvTVPVLwDk~~~tIVnNES~eIirm~N~aFde~~~~~~dlyP~~--Lr~eId~~n 180 (324)
T COG0435 104 GDPLYGIERLSQLYTR-ADPDYSGRVTVPVLWDKKTQTIVNNESAEIIRMFNSAFDEFGASAVDLYPEA--LRTEIDELN 180 (324)
T ss_pred CCcccchhHHHHHHhh-cCCCCCCceeEEEEEecCCCeeecCCcHHHHHHHHHHHHHHhhhccccCCHH--HHHHHHHHH
Confidence 100 112 23599999643 456899999999987664 24578865 567888888
Q ss_pred Hhhh-hhhhhhhhhc-------cCCcHHHHhhHHHHHHHHhhccCCCCcccCC-ccHHHHHHhhHHHHHHHHhhhcCCCc
Q 026482 125 SYSD-TFIKDVSTSF-------KGDTAKEAGPAFDFLEKALDKFDDGPFFLGQ-FSLVDIAYIPFVDGYQMILSEGFKYD 195 (238)
Q Consensus 125 ~~~~-~~~~~~~~~~-------~~~~~~~~~~~l~~le~~L~~~~~~~~l~G~-~t~aD~~l~~~l~~~~~~~~~~~~~~ 195 (238)
.++- ...+.++..- .++.-..+-+.|+.||+.|+ ++.||+|+ +|.||+-||++|.++..+.-..|+.+
T Consensus 181 ~~Iy~~vNNGVYk~GFA~tq~aYeea~~~lF~~Ld~lE~~L~---~~ryl~Gd~lTEAD~RLftTlvRFD~VYvgHFKCN 257 (324)
T COG0435 181 KWIYDTVNNGVYKAGFATTQEAYEEAVKKLFEALDKLEQILS---ERRYLTGDQLTEADIRLFTTLVRFDPVYVGHFKCN 257 (324)
T ss_pred hhhcccccCceeeecccchHHHHHHHHHHHHHHHHHHHHHhh---cCeeeccccchHhhhhhhheeEeecceEEeeeecc
Confidence 8877 4444444321 23345678889999999999 68999999 99999999999999977765555554
Q ss_pred cc--CCChhHHHHHHHHhcCcchhhcccCCChh
Q 026482 196 AT--IGRPKLAAWIEELNKMDVYKQTKYFKDPK 226 (238)
Q Consensus 196 ~~--~~~p~l~~~~~~~~~~p~~~~~~~~~~~~ 226 (238)
+. ..||+|..|...+...|+|++|+.+.+.+
T Consensus 258 ~~rI~dypnL~~yLr~LYq~pg~~~T~df~hIK 290 (324)
T COG0435 258 LRRIRDYPNLWGYLRDLYQLPGFAETVDFDHIK 290 (324)
T ss_pred cchhhcCchHHHHHHHHhcCcccccccchhHhh
Confidence 43 46999999999999999999999555533
No 27
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=99.79 E-value=4.4e-19 Score=117.98 Aligned_cols=74 Identities=30% Similarity=0.604 Sum_probs=68.0
Q ss_pred EEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCCChhhhhhhcCCCCCCCeEEeCCeEeechHHHHHHHHhcCCCC
Q 026482 31 LYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLEHNGKIIGESLDLINYVDSNFEGP 107 (238)
Q Consensus 31 Ly~~~~sp~~~~v~~~L~~~gipy~~~~~~v~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~~~~~~~ 107 (238)
||++.+||||+|+|++|+++||+ ++.+.++..++++++.. .||.|++|+|++||.+++||.+|++||+++++++
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i~--~~~~~v~~~~~~~~~~~-~~p~~~vPvL~~~g~~l~dS~~I~~yL~~~~~~~ 74 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGIP--YELVPVDPEEKRPEFLK-LNPKGKVPVLVDDGEVLTDSAAIIEYLEERYPGP 74 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTEE--EEEEEEBTTSTSHHHHH-HSTTSBSSEEEETTEEEESHHHHHHHHHHHSTSS
T ss_pred CCCcCCChHHHHHHHHHHHcCCe--EEEeccCcccchhHHHh-hcccccceEEEECCEEEeCHHHHHHHHHHHcCCC
Confidence 89999999999999999999997 77777777777788886 9999999999999999999999999999999865
No 28
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=99.76 E-value=3.9e-18 Score=116.17 Aligned_cols=70 Identities=24% Similarity=0.514 Sum_probs=64.4
Q ss_pred CCCchHHHHHHHHHhcCCCCceeEEeccCCCChhhhhhhcCCCCCCCeEEeCCeEeechHHHHHHHHhcCCCC
Q 026482 35 YTCPFAQRVWITRNYKGLQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLEHNGKIIGESLDLINYVDSNFEGP 107 (238)
Q Consensus 35 ~~sp~~~~v~~~L~~~gipy~~~~~~v~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~~~~~~~ 107 (238)
..||||+++|++|+++||+ ++++.+++.++++|+++ +||.|++|+|+++|.+|+||.+|++||+++++.+
T Consensus 20 g~cpf~~rvrl~L~eKgi~--ye~~~vd~~~~p~~~~~-~nP~g~vPvL~~~~~~i~eS~~I~eYLde~~~~~ 89 (91)
T cd03061 20 GNCPFCQRLFMVLWLKGVV--FNVTTVDMKRKPEDLKD-LAPGTQPPFLLYNGEVKTDNNKIEEFLEETLCPP 89 (91)
T ss_pred CCChhHHHHHHHHHHCCCc--eEEEEeCCCCCCHHHHH-hCCCCCCCEEEECCEEecCHHHHHHHHHHHccCC
Confidence 3599999999999999997 77788888889999997 9999999999999999999999999999998754
No 29
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.75 E-value=9.1e-18 Score=110.94 Aligned_cols=73 Identities=26% Similarity=0.442 Sum_probs=65.0
Q ss_pred eEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCCChhhhhhhcCCCCCCCeEEeCCeEeechHHHHHHHHhcC
Q 026482 29 TRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLEHNGKIIGESLDLINYVDSNF 104 (238)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~L~~~gipy~~~~~~v~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~~~~ 104 (238)
|+||+.+.||+|++++++|+++|++ ++.+.++....++++++ +||.|++|+|+++|..++||.+|++||++++
T Consensus 1 ~~ly~~~~~~~~~~v~~~l~~~gi~--~~~~~v~~~~~~~~~~~-~~p~~~vP~l~~~~~~l~es~aI~~yL~~~~ 73 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVLAEKGVS--VEIIDVDPDNPPEDLAE-LNPYGTVPTLVDRDLVLYESRIIMEYLDERF 73 (73)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCc--cEEEEcCCCCCCHHHHh-hCCCCCCCEEEECCEEEEcHHHHHHHHHhhC
Confidence 6899999999999999999999997 55666776666677776 9999999999999999999999999999864
No 30
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=99.74 E-value=9e-18 Score=110.89 Aligned_cols=70 Identities=26% Similarity=0.446 Sum_probs=60.2
Q ss_pred eEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCC---CChhhhhhhcCCCCCCCeEEeCCeEeechHHHHHHHH
Q 026482 29 TRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQ---DKPAWYKEKVYPSNKVPSLEHNGKIIGESLDLINYVD 101 (238)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~L~~~gipy~~~~~~v~~~---~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~ 101 (238)
++||+++.||+|++++++|+++|++| +.+.++.. .+++++.+ +||.|++|+|++||.+++||.+|++||+
T Consensus 1 ~~ly~~~~s~~s~rv~~~L~e~gl~~--e~~~v~~~~~~~~~~~~~~-inP~g~vP~L~~~g~~l~Es~aI~~yLe 73 (73)
T cd03052 1 LVLYHWTQSFSSQKVRLVIAEKGLRC--EEYDVSLPLSEHNEPWFMR-LNPTGEVPVLIHGDNIICDPTQIIDYLE 73 (73)
T ss_pred CEEecCCCCccHHHHHHHHHHcCCCC--EEEEecCCcCccCCHHHHH-hCcCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 47999999999999999999999985 45555542 34567776 9999999999999999999999999985
No 31
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=99.74 E-value=1.5e-17 Score=110.24 Aligned_cols=73 Identities=37% Similarity=0.568 Sum_probs=63.8
Q ss_pred eEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCCChhhhhhhcCCC-CCCCeEEeCCeEeechHHHHHHHHhcC
Q 026482 29 TRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQDKPAWYKEKVYPS-NKVPSLEHNGKIIGESLDLINYVDSNF 104 (238)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~L~~~gipy~~~~~~v~~~~~~~~~~~~~~p~-~~vP~L~~~g~~l~eS~aI~~yL~~~~ 104 (238)
|+||+++.||+|++++++|+++|++ ++.+.++...+++++++ .||. |++|+|+++|.+++||.+|++||++++
T Consensus 1 ~~Ly~~~~sp~~~~v~~~l~~~gl~--~~~~~~~~~~~~~~~~~-~~p~~~~vP~l~~~~~~l~eS~aI~~yL~~~~ 74 (74)
T cd03058 1 VKLLGAWASPFVLRVRIALALKGVP--YEYVEEDLGNKSELLLA-SNPVHKKIPVLLHNGKPICESLIIVEYIDEAW 74 (74)
T ss_pred CEEEECCCCchHHHHHHHHHHcCCC--CEEEEeCcccCCHHHHH-hCCCCCCCCEEEECCEEeehHHHHHHHHHhhC
Confidence 6899999999999999999999998 55556666666677776 9995 999999999999999999999998864
No 32
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=99.71 E-value=4.3e-17 Score=107.17 Aligned_cols=69 Identities=33% Similarity=0.583 Sum_probs=61.1
Q ss_pred eEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCCChhhhhhhcCCCCCCCeEEe-CCeEeechHHHHHHH
Q 026482 29 TRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLEH-NGKIIGESLDLINYV 100 (238)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~L~~~gipy~~~~~~v~~~~~~~~~~~~~~p~~~vP~L~~-~g~~l~eS~aI~~yL 100 (238)
++||++..||||+|++++|+++|++ ++.+.++...+++++++ +||.|++|+|++ ||..++||.+|++|+
T Consensus 1 ~~ly~~~~~p~~~rv~~~L~~~gl~--~e~~~v~~~~~~~~~~~-~np~~~vP~L~~~~g~~l~eS~aI~~y~ 70 (71)
T cd03060 1 PILYSFRRCPYAMRARMALLLAGIT--VELREVELKNKPAEMLA-ASPKGTVPVLVLGNGTVIEESLDIMRWA 70 (71)
T ss_pred CEEEecCCCcHHHHHHHHHHHcCCC--cEEEEeCCCCCCHHHHH-HCCCCCCCEEEECCCcEEecHHHHHHhh
Confidence 3799999999999999999999997 56667777666778876 999999999996 599999999999996
No 33
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=99.71 E-value=6.4e-17 Score=107.14 Aligned_cols=71 Identities=25% Similarity=0.358 Sum_probs=60.6
Q ss_pred eEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCC---ChhhhhhhcCCCCCCCeEEeCCeEeechHHHHHHHHh
Q 026482 29 TRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQD---KPAWYKEKVYPSNKVPSLEHNGKIIGESLDLINYVDS 102 (238)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~L~~~gipy~~~~~~v~~~~---~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~~ 102 (238)
++||+++.||+|++++++|+++|++| +.+.++... ..+++++ .||.|++|+|+++|.+++||.+|++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~--e~~~i~~~~~~~~~~~~~~-~~p~~~vP~l~~~~~~l~es~aI~~yL~~ 74 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAKALGLEL--NLKEVNLMKGEHLKPEFLK-LNPQHTVPTLVDNGFVLWESHAILIYLVE 74 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHHHcCCCC--EEEEecCccCCcCCHHHHh-hCcCCCCCEEEECCEEEEcHHHHHHHHhC
Confidence 58999999999999999999999974 455555422 3467776 99999999999999999999999999974
No 34
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=99.71 E-value=8.4e-17 Score=107.17 Aligned_cols=73 Identities=27% Similarity=0.342 Sum_probs=62.2
Q ss_pred CeEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCC---CChhhhhhhcCCCCCCCeEEeCCeEeechHHHHHHHHhc
Q 026482 28 TTRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQ---DKPAWYKEKVYPSNKVPSLEHNGKIIGESLDLINYVDSN 103 (238)
Q Consensus 28 ~~~Ly~~~~sp~~~~v~~~L~~~gipy~~~~~~v~~~---~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~~~ 103 (238)
+++||+.+.||+|++++++|+++|++|+ .+.++.. ..++++.+ +||.|++|+|+++|..++||.+|++||+++
T Consensus 1 ~~~Ly~~~~s~~s~~v~~~l~~~~i~~~--~~~~~~~~~~~~~~~~~~-~~P~~~vP~l~~~g~~l~es~aI~~yL~~~ 76 (76)
T cd03053 1 VLKLYGAAMSTCVRRVLLCLEEKGVDYE--LVPVDLTKGEHKSPEHLA-RNPFGQIPALEDGDLKLFESRAITRYLAEK 76 (76)
T ss_pred CeEEEeCCCChhHHHHHHHHHHcCCCcE--EEEeCccccccCCHHHHh-hCCCCCCCEEEECCEEEEcHHHHHHHHhhC
Confidence 4799999999999999999999999854 4444442 34567776 999999999999999999999999999863
No 35
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.71 E-value=6.4e-17 Score=108.04 Aligned_cols=73 Identities=23% Similarity=0.232 Sum_probs=61.2
Q ss_pred eEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCC-ChhhhhhhcCCCCCCCeEEe--CCeEeechHHHHHHHHhcC
Q 026482 29 TRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQD-KPAWYKEKVYPSNKVPSLEH--NGKIIGESLDLINYVDSNF 104 (238)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~L~~~gipy~~~~~~v~~~~-~~~~~~~~~~p~~~vP~L~~--~g~~l~eS~aI~~yL~~~~ 104 (238)
++||+++.||||++++++|.++||+ ++.+.++... ..++++. .||.|++|+|++ +|.+++||.+|++||++++
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~gi~--y~~~~v~~~~~~~~~~~~-~~p~~~vP~l~~~~~~~~l~es~~I~~yL~~~~ 77 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTELELD--VILYPCPKGSPKRDKFLE-KGGKVQVPYLVDPNTGVQMFESADIVKYLFKTY 77 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHcCCc--EEEEECCCChHHHHHHHH-hCCCCcccEEEeCCCCeEEEcHHHHHHHHHHhC
Confidence 7899999999999999999999998 5556665433 2445665 999999999996 4689999999999999874
No 36
>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]
Probab=99.70 E-value=2.2e-16 Score=124.64 Aligned_cols=175 Identities=18% Similarity=0.175 Sum_probs=122.7
Q ss_pred CCCCCCeEEEeeC-------CCchHHHHHHHHHhcCCCCceeEEeccCCCChhhhhhhcCCCCCCCeEEeCCeEeechHH
Q 026482 23 PLFDGTTRLYMAY-------TCPFAQRVWITRNYKGLQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLEHNGKIIGESLD 95 (238)
Q Consensus 23 ~~~~~~~~Ly~~~-------~sp~~~~v~~~L~~~gipy~~~~~~v~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~a 95 (238)
...++.+-||.++ .||||.++..+|+..+|||+ .+.- ++.. .++.|++|.++.+|+.+.||..
T Consensus 40 d~kkD~VYLyQF~R~~~~PnLSPfClKvEt~lR~~~IpYE--~~~~-------~~~~-rSr~G~lPFIELNGe~iaDS~~ 109 (281)
T KOG4244|consen 40 DYKKDTVYLYQFPRTKTCPNLSPFCLKVETFLRAYDIPYE--IVDC-------SLKR-RSRNGTLPFIELNGEHIADSDL 109 (281)
T ss_pred ccccCeEEEEeccccCCCCCCChHHHHHHHHHHHhCCCce--eccc-------ccee-eccCCCcceEEeCCeeccccHH
Confidence 4567889999996 49999999999999999954 4322 1212 5788999999999999999999
Q ss_pred HHHHHHhcCCCCCCCCCCHHHHHHHHHHHHhhh-hhhhh----------h------------------hhhc--------
Q 026482 96 LINYVDSNFEGPSLLPDDPEKRKFAEELFSYSD-TFIKD----------V------------------STSF-------- 138 (238)
Q Consensus 96 I~~yL~~~~~~~~l~p~~~~~~~~~~~~~~~~~-~~~~~----------~------------------~~~~-------- 138 (238)
|..+|.+.+.-+..++ +.+++..+.+...++ ++... + ...+
T Consensus 110 I~~~L~~hf~~~~~L~--~e~~a~s~Al~rm~dnhL~~~l~y~k~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~f~~k 187 (281)
T KOG4244|consen 110 IEDRLRKHFKIPDDLS--AEQRAQSRALSRMADNHLFWILLYYKGADDAWLNTDRKLIGLPGFLFPLLLPLFWKAIFGKK 187 (281)
T ss_pred HHHHHHHHcCCCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHhccCccccchHHHHHHHHHHHHHHH
Confidence 9999999887554343 334444433333333 11100 0 0000
Q ss_pred -------------cCCcHHHHhhHHHHHHHHhhccCCCCcccCC-ccHHHHHHhhHHHHHHHHhhhcCCCcccCCChhHH
Q 026482 139 -------------KGDTAKEAGPAFDFLEKALDKFDDGPFFLGQ-FSLVDIAYIPFVDGYQMILSEGFKYDATIGRPKLA 204 (238)
Q Consensus 139 -------------~~~~~~~~~~~l~~le~~L~~~~~~~~l~G~-~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~ 204 (238)
..+..+-+.+.+..++..|+ +++||+|+ +|-+|+.+|+.|..+..-.......-+.+++|+|.
T Consensus 188 v~~r~~g~IG~f~~~Ei~ell~rDlr~i~~~Lg---~KkflfGdkit~~DatvFgqLa~v~YP~~~~i~d~le~d~p~l~ 264 (281)
T KOG4244|consen 188 VYKRSTGAIGDFESAEIDELLHRDLRAISDYLG---DKKFLFGDKITPADATVFGQLAQVYYPFRSHISDLLEGDFPNLL 264 (281)
T ss_pred HHHHhhccccCcCHHHHHHHHHHHHHHHHHHhC---CCccccCCCCCcceeeehhhhhheeccCCCcHHHHHhhhchHHH
Confidence 01223456888889999998 89999999 99999999999998855111111112236899999
Q ss_pred HHHHHHhc
Q 026482 205 AWIEELNK 212 (238)
Q Consensus 205 ~~~~~~~~ 212 (238)
+|++|+++
T Consensus 265 eYceRIr~ 272 (281)
T KOG4244|consen 265 EYCERIRK 272 (281)
T ss_pred HHHHHHHH
Confidence 99999986
No 37
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=99.69 E-value=1.9e-16 Score=105.50 Aligned_cols=73 Identities=21% Similarity=0.382 Sum_probs=61.8
Q ss_pred eEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCC---ChhhhhhhcCCCCCCCeEEeCCeEeechHHHHHHHHhcC
Q 026482 29 TRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQD---KPAWYKEKVYPSNKVPSLEHNGKIIGESLDLINYVDSNF 104 (238)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~L~~~gipy~~~~~~v~~~~---~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~~~~ 104 (238)
++||+++.|++|++++++|+++|++| +.+.++... ..+++.. .||.|++|+|+++|.+++||.+|++||++++
T Consensus 1 ~~ly~~~~s~~~~~v~~~l~~~g~~~--~~~~v~~~~~~~~~~~~~~-~~p~~~vP~L~~~~~~l~eS~aI~~Yl~~~~ 76 (76)
T cd03050 1 LKLYYDLMSQPSRAVYIFLKLNKIPF--EECPIDLRKGEQLTPEFKK-INPFGKVPAIVDGDFTLAESVAILRYLARKF 76 (76)
T ss_pred CEEeeCCCChhHHHHHHHHHHcCCCc--EEEEecCCCCCcCCHHHHH-hCcCCCCCEEEECCEEEEcHHHHHHHHHhhC
Confidence 57999999999999999999999985 444555432 3456775 9999999999999999999999999999864
No 38
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=99.68 E-value=1.3e-16 Score=105.49 Aligned_cols=72 Identities=8% Similarity=0.015 Sum_probs=60.9
Q ss_pred eEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCCChhhhhhhcCCCCCCCeEEeCCeEeechHHHHHHHHhc
Q 026482 29 TRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLEHNGKIIGESLDLINYVDSN 103 (238)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~L~~~gipy~~~~~~v~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~~~ 103 (238)
++||+++.|++|++++++|+++|++| +.+.++.....+.++. +||.|++|+|+++|.+++||.+|++||+++
T Consensus 2 ~~Ly~~~~~~~~~~v~~~L~~~~i~~--e~~~v~~~~~~~~~~~-~~p~~~vP~l~~~~~~l~es~aI~~yL~~~ 73 (73)
T cd03076 2 YTLTYFPVRGRAEAIRLLLADQGISW--EEERVTYEEWQESLKP-KMLFGQLPCFKDGDLTLVQSNAILRHLGRK 73 (73)
T ss_pred cEEEEeCCcchHHHHHHHHHHcCCCC--EEEEecHHHhhhhhhc-cCCCCCCCEEEECCEEEEcHHHHHHHHhcC
Confidence 78999999999999999999999985 4555554333445665 999999999999999999999999999763
No 39
>cd03203 GST_C_Lambda GST_C family, Class Lambda subfamily; composed of plant-specific class Lambda GSTs. GSTs are cytosolic, usually dimeric, proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Lambda subfamily was recently discovered, together with dehydroascorbate reductases (DHARs), as two outlying groups of the GST superfamily in Arabidopsis thaliana, which contain conserved active site cysteines. Characterization of recombinant A. thaliana proteins show that Lambda class GSTs are monomeric, similar
Probab=99.68 E-value=7.5e-16 Score=111.77 Aligned_cols=119 Identities=61% Similarity=1.092 Sum_probs=94.5
Q ss_pred CHHHHHHHHHHHHhhhhhhhhhhhh-ccCCcHHHHhhHHHHHHHHhhccCCCCcccCCccHHHHHHhhHHHHHHHHhhhc
Q 026482 113 DPEKRKFAEELFSYSDTFIKDVSTS-FKGDTAKEAGPAFDFLEKALDKFDDGPFFLGQFSLVDIAYIPFVDGYQMILSEG 191 (238)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~le~~L~~~~~~~~l~G~~t~aD~~l~~~l~~~~~~~~~~ 191 (238)
|+.+|+.+++++.+...+...++.. +++...+.+.+.++.||+.|+..++++|++|++|+|||++++.+.++.......
T Consensus 1 d~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Le~~L~~~~~~~fl~G~~tlADi~l~~~~~~~~~~~~~~ 80 (120)
T cd03203 1 DPAKREFADELLAYTDAFTKALYSSLIKGDPSAEAAAALDYIENALSKFDDGPFFLGQFSLVDIAYVPFIERFQIFLSEL 80 (120)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhcCCCCCcCCCccHHHHHHHHHHHHHHHHHHHh
Confidence 4678999999999866666555444 345556788999999999997433578999999999999999998775432233
Q ss_pred CCCcccCCChhHHHHHHHHhcCcchhhcccCCChhhHHHHhc
Q 026482 192 FKYDATIGRPKLAAWIEELNKMDVYKQTKYFKDPKQLFEYYK 233 (238)
Q Consensus 192 ~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 233 (238)
.+.++.+++|+|.+|+++|.++|+|+++. ++.++++++++
T Consensus 81 ~~~~~~~~~P~l~~W~~~~~~rp~~~~~~--~~~~~~~~~~~ 120 (120)
T cd03203 81 FNYDITEGRPNLAAWIEEMNKIEAYTQTK--QDPQELLDLAK 120 (120)
T ss_pred cCccccccCcHHHHHHHHHhcchHHHhHc--CCHHHHHhhhC
Confidence 35555568999999999999999999999 99999999875
No 40
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.68 E-value=2e-16 Score=104.39 Aligned_cols=70 Identities=21% Similarity=0.367 Sum_probs=60.0
Q ss_pred eEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCC---CChhhhhhhcCCCCCCCeEEeCCeEeechHHHHHHHH
Q 026482 29 TRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQ---DKPAWYKEKVYPSNKVPSLEHNGKIIGESLDLINYVD 101 (238)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~L~~~gipy~~~~~~v~~~---~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~ 101 (238)
++||+++.||+|++++++|+++|++| +.+.++.. ...+++++ +||.|++|+|+++|.+++||.+|++||+
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~~~~~--~~~~i~~~~~~~~~~~~~~-~~p~~~vP~l~~~~~~i~es~aI~~yl~ 73 (73)
T cd03056 1 MKLYGFPLSGNCYKVRLLLALLGIPY--EWVEVDILKGETRTPEFLA-LNPNGEVPVLELDGRVLAESNAILVYLA 73 (73)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCc--EEEEecCCCcccCCHHHHH-hCCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 58999999999999999999999985 45555542 34567776 9999999999999999999999999984
No 41
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=99.68 E-value=2.3e-16 Score=104.26 Aligned_cols=72 Identities=18% Similarity=0.177 Sum_probs=59.0
Q ss_pred eEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCC-CChhhhhhhcCCCCCCCeEEeCCeEeechHHHHHHHH
Q 026482 29 TRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQ-DKPAWYKEKVYPSNKVPSLEHNGKIIGESLDLINYVD 101 (238)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~L~~~gipy~~~~~~v~~~-~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~ 101 (238)
++||+++.||++++++++|+++|++|+...+..... ...+++++ +||.|++|+|+++|..|+||.+|++||+
T Consensus 1 ~~l~~~~~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~-~nP~~~vP~L~~~~~~l~eS~aI~~YL~ 73 (73)
T cd03047 1 LTIWGRRSSINVQKVLWLLDELGLPYERIDAGGQFGGLDTPEFLA-MNPNGRVPVLEDGDFVLWESNAILRYLA 73 (73)
T ss_pred CEEEecCCCcchHHHHHHHHHcCCCCEEEEeccccccccCHHHHh-hCCCCCCCEEEECCEEEECHHHHHHHhC
Confidence 589999999999999999999999855443332222 23456665 9999999999999999999999999984
No 42
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=99.68 E-value=1.7e-16 Score=105.42 Aligned_cols=70 Identities=27% Similarity=0.468 Sum_probs=60.5
Q ss_pred EEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCC--CChhhhhhhcCCCCCCCeEEe-CCeEeechHHHHHHHHh
Q 026482 30 RLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQ--DKPAWYKEKVYPSNKVPSLEH-NGKIIGESLDLINYVDS 102 (238)
Q Consensus 30 ~Ly~~~~sp~~~~v~~~L~~~gipy~~~~~~v~~~--~~~~~~~~~~~p~~~vP~L~~-~g~~l~eS~aI~~yL~~ 102 (238)
+||+++.||+|++++++|+++|++ ++.+.++.. ..++++++ +||.|++|+|++ +|.+++||.+|++||++
T Consensus 2 ~Ly~~~~~~~~~~~~~~l~~~gi~--~~~~~v~~~~~~~~~~~~~-~nP~~~vP~L~~~~g~~l~es~aI~~yL~~ 74 (75)
T cd03044 2 TLYTYPGNPRSLKILAAAKYNGLD--VEIVDFQPGKENKTPEFLK-KFPLGKVPAFEGADGFCLFESNAIAYYVAN 74 (75)
T ss_pred eEecCCCCccHHHHHHHHHHcCCc--eEEEecccccccCCHHHHH-hCCCCCCCEEEcCCCCEEeeHHHHHHHHhh
Confidence 799999999999999999999997 555556553 45677876 999999999995 68999999999999975
No 43
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=99.67 E-value=1.9e-16 Score=103.67 Aligned_cols=67 Identities=39% Similarity=0.649 Sum_probs=54.5
Q ss_pred CCchHHHHHHHHHhcCCCCceeEEec--cCCCChhhhhhhcCCCCCCCeEEe-CCeEeechHHHHHHHHhc
Q 026482 36 TCPFAQRVWITRNYKGLQDEIKLVAF--DLQDKPAWYKEKVYPSNKVPSLEH-NGKIIGESLDLINYVDSN 103 (238)
Q Consensus 36 ~sp~~~~v~~~L~~~gipy~~~~~~v--~~~~~~~~~~~~~~p~~~vP~L~~-~g~~l~eS~aI~~yL~~~ 103 (238)
+|||++|++++|+++|++|++..+.. +....++++.+ +||.|+||+|++ +|.++.||.+|++||+++
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~-~~p~~~VP~L~~~~g~vi~eS~~I~~yL~~~ 70 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLA-LNPRGKVPVLVDPDGTVINESLAILEYLEEQ 70 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHH-HSTT-SSSEEEETTTEEEESHHHHHHHHHHT
T ss_pred CchHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhc-cCcCeEEEEEEECCCCEeeCHHHHHHHHhcC
Confidence 59999999999999999977666532 22345578887 999999999996 889999999999999874
No 44
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=99.67 E-value=2.6e-16 Score=103.43 Aligned_cols=70 Identities=24% Similarity=0.560 Sum_probs=57.5
Q ss_pred eEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCCChhhhhhhcCCCCCCCeEEeC-CeEeechHHHHHHHHh
Q 026482 29 TRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLEHN-GKIIGESLDLINYVDS 102 (238)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~L~~~gipy~~~~~~v~~~~~~~~~~~~~~p~~~vP~L~~~-g~~l~eS~aI~~yL~~ 102 (238)
|+||++..||||+|+|++|.++|++ ++.+.++....... .+ .+|.+++|+|+++ |..++||.+|++||++
T Consensus 1 ~~Ly~~~~~p~~~rvr~~L~~~gl~--~~~~~~~~~~~~~~-~~-~~~~~~vP~L~~~~~~~l~es~aI~~yL~~ 71 (71)
T cd03037 1 MKLYIYEHCPFCVKARMIAGLKNIP--VEQIILQNDDEATP-IR-MIGAKQVPILEKDDGSFMAESLDIVAFIDE 71 (71)
T ss_pred CceEecCCCcHhHHHHHHHHHcCCC--eEEEECCCCchHHH-HH-hcCCCccCEEEeCCCeEeehHHHHHHHHhC
Confidence 5799999999999999999999998 55555654332333 33 7899999999965 8999999999999974
No 45
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=99.67 E-value=3.8e-16 Score=105.35 Aligned_cols=73 Identities=22% Similarity=0.355 Sum_probs=61.6
Q ss_pred eEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCC---CChhhhhhhcCCCCCCCeEEeC---CeEeechHHHHHHHHh
Q 026482 29 TRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQ---DKPAWYKEKVYPSNKVPSLEHN---GKIIGESLDLINYVDS 102 (238)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~L~~~gipy~~~~~~v~~~---~~~~~~~~~~~p~~~vP~L~~~---g~~l~eS~aI~~yL~~ 102 (238)
++||+.+. |+|++++++|+++|++|+ .+.++.. ...+++++ +||.|++|+|+++ |..|+||.+|++||++
T Consensus 2 ~~Ly~~~~-~~~~~v~~~l~~~gl~~~--~~~~~~~~~~~~~~~~~~-~~p~~~vP~l~~~~~~g~~l~eS~aI~~yL~~ 77 (81)
T cd03048 2 ITLYTHGT-PNGFKVSIMLEELGLPYE--IHPVDISKGEQKKPEFLK-INPNGRIPAIVDHNGTPLTVFESGAILLYLAE 77 (81)
T ss_pred eEEEeCCC-CChHHHHHHHHHcCCCcE--EEEecCcCCcccCHHHHH-hCcCCCCCEEEeCCCCceEEEcHHHHHHHHHH
Confidence 78999885 999999999999999854 4445432 34567776 9999999999976 8899999999999999
Q ss_pred cCC
Q 026482 103 NFE 105 (238)
Q Consensus 103 ~~~ 105 (238)
+++
T Consensus 78 ~~~ 80 (81)
T cd03048 78 KYD 80 (81)
T ss_pred HhC
Confidence 886
No 46
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=99.66 E-value=3e-16 Score=103.39 Aligned_cols=71 Identities=20% Similarity=0.252 Sum_probs=58.9
Q ss_pred eEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCCCh-hhhhhhcCCCCCCCeEEeCCeEeechHHHHHHHHh
Q 026482 29 TRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQDKP-AWYKEKVYPSNKVPSLEHNGKIIGESLDLINYVDS 102 (238)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~L~~~gipy~~~~~~v~~~~~~-~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~~ 102 (238)
++||+++.|++|+++|++|+++|++|+ .+.++..... ..+.. +||.|++|+|+++|..++||.+|++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e--~~~~~~~~~~~~~~~~-~~p~~~vP~L~~~~~~l~es~aI~~yL~~ 72 (72)
T cd03039 1 YKLTYFNIRGRGEPIRLLLADAGVEYE--DVRITYEEWPELDLKP-TLPFGQLPVLEIDGKKLTQSNAILRYLAR 72 (72)
T ss_pred CEEEEEcCcchHHHHHHHHHHCCCCcE--EEEeCHHHhhhhhhcc-CCcCCCCCEEEECCEEEEecHHHHHHhhC
Confidence 589999999999999999999999854 4555543222 22554 99999999999999999999999999974
No 47
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=99.66 E-value=4.3e-16 Score=102.97 Aligned_cols=72 Identities=28% Similarity=0.452 Sum_probs=58.7
Q ss_pred eEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCC-CChhhhhhhcCCCCCCCeEE-eCCeEeechHHHHHHHH
Q 026482 29 TRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQ-DKPAWYKEKVYPSNKVPSLE-HNGKIIGESLDLINYVD 101 (238)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~L~~~gipy~~~~~~v~~~-~~~~~~~~~~~p~~~vP~L~-~~g~~l~eS~aI~~yL~ 101 (238)
++||+.+.||+|++++++|.++|++|+...+..... ...+++.+ +||.+++|+|+ ++|..++||.+|++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~-~~p~~~vP~l~~~~~~~l~es~aI~~yLe 74 (74)
T cd03051 1 MKLYDSPTAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQRSPEFLA-KNPAGTVPVLELDDGTVITESVAICRYLE 74 (74)
T ss_pred CEEEeCCCCcchHHHHHHHHHcCCCceEEEeecccCccCCHHHHh-hCCCCCCCEEEeCCCCEEecHHHHHHHhC
Confidence 589999999999999999999999855544332222 23456665 99999999998 68889999999999985
No 48
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.66 E-value=4.2e-16 Score=102.96 Aligned_cols=70 Identities=23% Similarity=0.382 Sum_probs=61.4
Q ss_pred eEEEeeCCCchHHHHHHHHHh--cCCCCceeEEeccCCCChhhhhhhcCCCCCCCeEE-eCCeEeechHHHHHHHH
Q 026482 29 TRLYMAYTCPFAQRVWITRNY--KGLQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLE-HNGKIIGESLDLINYVD 101 (238)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~L~~--~gipy~~~~~~v~~~~~~~~~~~~~~p~~~vP~L~-~~g~~l~eS~aI~~yL~ 101 (238)
++||++..||+|+++|++|++ +|++ ++.+.++...+.++++. .||.+++|+|+ +||..++||.+|++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~l~~~~~~i~--~~~~~~~~~~~~~~~~~-~~p~~~vP~l~~~~g~~l~es~aI~~yLe 73 (73)
T cd03049 1 MKLLYSPTSPYVRKVRVAAHETGLGDD--VELVLVNPWSDDESLLA-VNPLGKIPALVLDDGEALFDSRVICEYLD 73 (73)
T ss_pred CEEecCCCCcHHHHHHHHHHHhCCCCC--cEEEEcCcccCChHHHH-hCCCCCCCEEEECCCCEEECHHHHHhhhC
Confidence 589999999999999999999 7886 66777776666677776 99999999998 68899999999999985
No 49
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=99.65 E-value=8.2e-16 Score=102.31 Aligned_cols=73 Identities=25% Similarity=0.346 Sum_probs=60.9
Q ss_pred eEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCC---CChhhhhhhcCCCCCCCeEEeCCeEeechHHHHHHHHhcCC
Q 026482 29 TRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQ---DKPAWYKEKVYPSNKVPSLEHNGKIIGESLDLINYVDSNFE 105 (238)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~L~~~gipy~~~~~~v~~~---~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~~~~~ 105 (238)
++||+++. +++++++++|+++|++|+.. .++.. .+.+++.+ .||.+++|+|+++|.+++||.+|++||+++++
T Consensus 1 ~~l~~~~~-~~~~~v~~~l~~~~i~~~~~--~~~~~~~~~~~~~~~~-~~p~~~vP~l~~~g~~l~es~aI~~yL~~~~~ 76 (76)
T cd03046 1 ITLYHLPR-SRSFRILWLLEELGLPYELV--LYDRGPGEQAPPEYLA-INPLGKVPVLVDGDLVLTESAAIILYLAEKYG 76 (76)
T ss_pred CEEEeCCC-CChHHHHHHHHHcCCCcEEE--EeCCCCCccCCHHHHh-cCCCCCCCEEEECCEEEEcHHHHHHHHHHhCc
Confidence 57999885 68999999999999985544 45542 34566765 99999999999999999999999999998874
No 50
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=99.65 E-value=3.7e-15 Score=118.36 Aligned_cols=174 Identities=21% Similarity=0.295 Sum_probs=118.2
Q ss_pred CeEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCCChhhhhhhcCCCCCCCeEEeCCeEeechHHHHHHHHh-----
Q 026482 28 TTRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLEHNGKIIGESLDLINYVDS----- 102 (238)
Q Consensus 28 ~~~Ly~~~~sp~~~~v~~~L~~~gipy~~~~~~v~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~~----- 102 (238)
.++||.+..||||-+||.+|.+.|++ |++++|+.-...+. +.+...+||+|..+|..+.||.+|+.-|.-
T Consensus 90 ~l~LyQyetCPFCcKVrAFLDyhgis--Y~VVEVnpV~r~eI---k~SsykKVPil~~~Geqm~dSsvIIs~laTyLq~~ 164 (370)
T KOG3029|consen 90 DLVLYQYETCPFCCKVRAFLDYHGIS--YAVVEVNPVLRQEI---KWSSYKKVPILLIRGEQMVDSSVIISLLATYLQDK 164 (370)
T ss_pred eEEEEeeccCchHHHHHHHHhhcCCc--eEEEEecchhhhhc---cccccccccEEEeccceechhHHHHHHHHHHhccC
Confidence 69999999999999999999999998 77888876544433 467889999999767779999999986622
Q ss_pred ---------cCCCC---------------CC---C----C-CCHHHHHHHHHHHHhhhhhh-----hhhhhhc-------
Q 026482 103 ---------NFEGP---------------SL---L----P-DDPEKRKFAEELFSYSDTFI-----KDVSTSF------- 138 (238)
Q Consensus 103 ---------~~~~~---------------~l---~----p-~~~~~~~~~~~~~~~~~~~~-----~~~~~~~------- 138 (238)
.||.. ++ + | .+-+.+..-+.|-.|.++++ +.+|...
T Consensus 165 ~q~l~eiiq~yPa~~~~ne~GK~v~~~~NKyflM~~e~d~~~~ke~~~eerkWR~WvDn~lVHLiSPNvYrn~~EsletF 244 (370)
T KOG3029|consen 165 RQDLGEIIQMYPATSFFNEDGKEVNDILNKYFLMYREHDPGVSKETDEEERKWRSWVDNHLVHLISPNVYRNMGESLETF 244 (370)
T ss_pred CCCHHHHHHhccccccccccccchhhcchhheeeeeccCCCccccchHHHhHHHHHHhhhhhhhcCcccccChhhHHHHH
Confidence 22310 00 0 0 01112223344555555211 1111100
Q ss_pred -----------------------------------------cCCcHHHHhhHHHHHHHHhhccCCCCcccCC-ccHHHHH
Q 026482 139 -----------------------------------------KGDTAKEAGPAFDFLEKALDKFDDGPFFLGQ-FSLVDIA 176 (238)
Q Consensus 139 -----------------------------------------~~~~~~~~~~~l~~le~~L~~~~~~~~l~G~-~t~aD~~ 176 (238)
-.+.++.+.++++.+-..|++ +++|++|+ |++||+.
T Consensus 245 ewf~q~G~w~~~FpawEr~lavY~GAtAM~lisK~LKkkhni~D~Re~lydA~d~Wvaalgk--nr~flGG~kPnLaDLs 322 (370)
T KOG3029|consen 245 EWFSQAGEWDVHFPAWERDLAVYCGATAMYLISKMLKKKHNISDEREHLYDAADQWVAALGK--NRPFLGGKKPNLADLS 322 (370)
T ss_pred HHHHHcCCccccCchHHHHHHHHhhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhCC--CCCccCCCCCchhhhh
Confidence 012456677777777777875 89999999 9999999
Q ss_pred HhhHHHHHHHHhhhcCCCcccCCChhHHHHHHHHhc
Q 026482 177 YIPFVDGYQMILSEGFKYDATIGRPKLAAWIEELNK 212 (238)
Q Consensus 177 l~~~l~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~ 212 (238)
+|++|..++.... ..+. -....+..|+-+|.+
T Consensus 323 vfGvl~sm~gc~a---fkd~-~q~t~I~eW~~rmea 354 (370)
T KOG3029|consen 323 VFGVLRSMEGCQA---FKDC-LQNTSIGEWYYRMEA 354 (370)
T ss_pred hhhhhhHhhhhhH---HHHH-HhcchHHHHHHHHHH
Confidence 9999988866532 1122 256899999999975
No 51
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=5.8e-15 Score=109.72 Aligned_cols=171 Identities=21% Similarity=0.359 Sum_probs=115.5
Q ss_pred eEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCCChhhhhhhcCCCCCCCeEE-eCCeEeechHHHHHHHHhcCCCC
Q 026482 29 TRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLE-HNGKIIGESLDLINYVDSNFEGP 107 (238)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~L~~~gipy~~~~~~v~~~~~~~~~~~~~~p~~~vP~L~-~~g~~l~eS~aI~~yL~~~~~~~ 107 (238)
|+||.+..||||-|+|++.-.+|||++..+..-|-...|-. +-...+||+|+ +||..+.||..|++|+++..+.+
T Consensus 1 MkLYIYdHCPfcvrarmi~Gl~nipve~~vL~nDDe~Tp~r----miG~KqVPiL~Kedg~~m~ESlDIV~y~d~~~~~~ 76 (215)
T COG2999 1 MKLYIYDHCPFCVRARMIFGLKNIPVELHVLLNDDEETPIR----MIGQKQVPILQKEDGRAMPESLDIVHYVDELDGKP 76 (215)
T ss_pred CceeEeccChHHHHHHHHhhccCCChhhheeccCcccChhh----hhcccccceEEccccccchhhhHHHHHHHHhcCch
Confidence 68999999999999999999999995544433222222322 44568899999 99999999999999999998765
Q ss_pred CCCCCCHHHHHHHHHHHHhhhhhhhh-hhhhc--------------------c--------------CCcHHHHhhHHHH
Q 026482 108 SLLPDDPEKRKFAEELFSYSDTFIKD-VSTSF--------------------K--------------GDTAKEAGPAFDF 152 (238)
Q Consensus 108 ~l~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~--------------------~--------------~~~~~~~~~~l~~ 152 (238)
-+-+. -+..+..|..-+....+. .++++ + .....++...++.
T Consensus 77 ~lt~~---~~pai~~wlrkv~~y~nkll~PR~~k~~l~EF~T~sA~~yf~~KKe~s~g~F~~~l~~t~~~~~~i~~dl~~ 153 (215)
T COG2999 77 LLTGK---VRPAIEAWLRKVNGYLNKLLLPRFAKSALPEFATPSARKYFTDKKEASEGSFESLLNHTAQYLKRIQADLRA 153 (215)
T ss_pred hhccC---cCHHHHHHHHHhcchHhhhhhhhHhhcCCccccCHHHHHHHHhhhhhccccHHHHHhchHHHHHHHHHHHHH
Confidence 33321 122334444433321111 11111 0 1234678899999
Q ss_pred HHHHhhccCCCCcccCCccHHHHHHhhHHHHHHHHhhhcCCCcccCCChhHHHHHHHHhcCcch
Q 026482 153 LEKALDKFDDGPFFLGQFSLVDIAYIPFVDGYQMILSEGFKYDATIGRPKLAAWIEELNKMDVY 216 (238)
Q Consensus 153 le~~L~~~~~~~~l~G~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~ 216 (238)
++..+. +..=+-|.+++-|+.+|+.|..+-.. .+..|. .++..|..+|.+...+
T Consensus 154 l~~Li~---~~s~~n~~l~~ddi~vFplLRnlt~v----~gi~wp---s~v~dy~~~msektqV 207 (215)
T COG2999 154 LDKLIV---GPSAVNGELSEDDILVFPLLRNLTLV----AGIQWP---SRVADYRDNMSEKTQV 207 (215)
T ss_pred HHHHhc---CcchhccccchhhhhhhHHhccceec----ccCCCc---HHHHHHHHHHHHhhCc
Confidence 999997 34434445999999999999866322 244443 6899999999886554
No 52
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=99.63 E-value=1.4e-15 Score=101.49 Aligned_cols=72 Identities=25% Similarity=0.405 Sum_probs=60.0
Q ss_pred CeEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCCChhhhhhhcCCCCCCCeEEeC----CeEeechHHHHHHHHhc
Q 026482 28 TTRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLEHN----GKIIGESLDLINYVDSN 103 (238)
Q Consensus 28 ~~~Ly~~~~sp~~~~v~~~L~~~gipy~~~~~~v~~~~~~~~~~~~~~p~~~vP~L~~~----g~~l~eS~aI~~yL~~~ 103 (238)
+++||+.+.||||++++++|.++|++ ++.+.++....++ + +.||.+++|+|+++ |.+++||.+|++||++.
T Consensus 1 ~i~Ly~~~~~p~c~kv~~~L~~~gi~--y~~~~~~~~~~~~-~--~~~~~~~vP~l~~~~~~~~~~l~eS~~I~~yL~~~ 75 (77)
T cd03040 1 KITLYQYKTCPFCCKVRAFLDYHGIP--YEVVEVNPVSRKE-I--KWSSYKKVPILRVESGGDGQQLVDSSVIISTLKTY 75 (77)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCc--eEEEECCchhHHH-H--HHhCCCccCEEEECCCCCccEEEcHHHHHHHHHHH
Confidence 48999999999999999999999997 5566666543333 3 37899999999954 78999999999999986
Q ss_pred C
Q 026482 104 F 104 (238)
Q Consensus 104 ~ 104 (238)
.
T Consensus 76 ~ 76 (77)
T cd03040 76 L 76 (77)
T ss_pred c
Confidence 4
No 53
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=99.63 E-value=2e-15 Score=100.80 Aligned_cols=73 Identities=27% Similarity=0.412 Sum_probs=60.5
Q ss_pred eEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCC---CChhhhhhhcCCCCCCCeEEeC-CeEeechHHHHHHHHhcC
Q 026482 29 TRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQ---DKPAWYKEKVYPSNKVPSLEHN-GKIIGESLDLINYVDSNF 104 (238)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~L~~~gipy~~~~~~v~~~---~~~~~~~~~~~p~~~vP~L~~~-g~~l~eS~aI~~yL~~~~ 104 (238)
++||+++.| ++++++++|+++|++| +.+.++.. ...++++. +||.|++|+|+++ |..++||.+|++||++++
T Consensus 1 ~~Ly~~~~~-~~~~v~~~l~~~~i~~--~~~~~~~~~~~~~~~~~~~-~np~~~vP~l~~~~g~~l~eS~aI~~yL~~~~ 76 (77)
T cd03057 1 MKLYYSPGA-CSLAPHIALEELGLPF--ELVRVDLRTKTQKGADYLA-INPKGQVPALVLDDGEVLTESAAILQYLADLH 76 (77)
T ss_pred CEEEeCCCC-chHHHHHHHHHcCCCc--eEEEEecccCccCCHhHHH-hCCCCCCCEEEECCCcEEEcHHHHHHHHHHhC
Confidence 579999876 5899999999999985 44555543 34667776 9999999999965 899999999999999987
Q ss_pred C
Q 026482 105 E 105 (238)
Q Consensus 105 ~ 105 (238)
|
T Consensus 77 p 77 (77)
T cd03057 77 P 77 (77)
T ss_pred c
Confidence 5
No 54
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=99.62 E-value=1.9e-15 Score=99.65 Aligned_cols=70 Identities=33% Similarity=0.528 Sum_probs=59.8
Q ss_pred eEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCC---CChhhhhhhcCCCCCCCeEEeCCeEeechHHHHHHHH
Q 026482 29 TRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQ---DKPAWYKEKVYPSNKVPSLEHNGKIIGESLDLINYVD 101 (238)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~L~~~gipy~~~~~~v~~~---~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~ 101 (238)
|+||++..|++|++++++|+++|++|+ .+.++.. ...+++++ .||.|++|+|+++|..++||.+|++||+
T Consensus 1 ~~L~~~~~~~~~~~~~~~l~~~gi~~~--~~~~~~~~~~~~~~~~~~-~~p~~~vP~l~~~~~~l~es~aI~~yL~ 73 (73)
T cd03042 1 MILYSYFRSSASYRVRIALNLKGLDYE--YVPVNLLKGEQLSPAYRA-LNPQGLVPTLVIDGLVLTQSLAIIEYLD 73 (73)
T ss_pred CEEecCCCCcchHHHHHHHHHcCCCCe--EEEecCccCCcCChHHHH-hCCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 589999999999999999999999854 4455542 34567776 9999999999999999999999999985
No 55
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=99.61 E-value=3.3e-15 Score=100.85 Aligned_cols=74 Identities=16% Similarity=0.248 Sum_probs=58.7
Q ss_pred eEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCC-----Chhhhhh---hcCCCCCCCeEEeCCeEeechHHHHHHH
Q 026482 29 TRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQD-----KPAWYKE---KVYPSNKVPSLEHNGKIIGESLDLINYV 100 (238)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~L~~~gipy~~~~~~v~~~~-----~~~~~~~---~~~p~~~vP~L~~~g~~l~eS~aI~~yL 100 (238)
++||++..++.|++++++|+++|++ ++.+.++... .+++... ..+|.|+||+|++||.+++||.||++||
T Consensus 1 ~~l~y~~~~~~~~~~~~~l~~~gi~--~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~ES~AIl~YL 78 (82)
T cd03075 1 PTLGYWDIRGLAQPIRLLLEYTGEK--YEEKRYELGDAPDYDRSQWLNEKFKLGLDFPNLPYYIDGDVKLTQSNAILRYI 78 (82)
T ss_pred CEEEEeCCccccHHHHHHHHHcCCC--cEEEEeccCCccccchHhhhccchhcCCcCCCCCEEEECCEEEeehHHHHHHH
Confidence 4799999999999999999999997 4555555532 1334322 0129999999999999999999999999
Q ss_pred HhcC
Q 026482 101 DSNF 104 (238)
Q Consensus 101 ~~~~ 104 (238)
++++
T Consensus 79 a~~~ 82 (82)
T cd03075 79 ARKH 82 (82)
T ss_pred hhcC
Confidence 8764
No 56
>cd03198 GST_C_CLIC GST_C family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin, and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division, and apoptosis. They can exist in both water-soluble and membrane-bound states and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and adopts a fold similar to GSTs, containing an N-terminal domain with a thioredoxin fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. T
Probab=99.60 E-value=7.5e-15 Score=107.45 Aligned_cols=94 Identities=14% Similarity=0.184 Sum_probs=77.3
Q ss_pred cCCcHHHHhhHHHHHHHHhhcc-------------CCCCcccCC-ccHHHHHHhhHHHHHHHHhhhcCCCcccCCChhHH
Q 026482 139 KGDTAKEAGPAFDFLEKALDKF-------------DDGPFFLGQ-FSLVDIAYIPFVDGYQMILSEGFKYDATIGRPKLA 204 (238)
Q Consensus 139 ~~~~~~~~~~~l~~le~~L~~~-------------~~~~~l~G~-~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~ 204 (238)
.+.....+.+.|+.||.+|++- ++++|++|+ +|+|||.+++.+.++..+.....+..+...+|+|.
T Consensus 27 ~e~~~~~l~~~L~~ld~~L~~~~~~~~~~~~~~~~~~~~fL~Gd~fTlADi~l~p~L~~~~~~~~~~~g~~i~~~~P~L~ 106 (134)
T cd03198 27 NENLEKGLLKALKKLDDYLNSPLPDEIDSAEDEGVSQRKFLDGDELTLADCNLLPKLHIVKVVAKKYRNFEIPADLTGLW 106 (134)
T ss_pred hHHHHHHHHHHHHHHHHHHccCccccccccccccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCccccCHHHH
Confidence 4455678999999999999840 137899999 99999999999988865433333555457899999
Q ss_pred HHHHHHhcCcchhhcccCCChhhHHHHhcc
Q 026482 205 AWIEELNKMDVYKQTKYFKDPKQLFEYYKI 234 (238)
Q Consensus 205 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 234 (238)
+|++++.+||+|++++ +..+.++.+|+.
T Consensus 107 aw~~ri~aRPsfk~t~--~~~~~i~~~~~~ 134 (134)
T cd03198 107 RYLKNAYQREEFTNTC--PADQEIELAYKD 134 (134)
T ss_pred HHHHHHHCCHHHHHHc--CCHHHHHHHhcC
Confidence 9999999999999999 999899999974
No 57
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=99.60 E-value=5.9e-15 Score=97.97 Aligned_cols=67 Identities=25% Similarity=0.314 Sum_probs=57.6
Q ss_pred eEEEeeC-------CCchHHHHHHHHHhcCCCCceeEEeccCCCChhhhhhhcCCCCCCCeEEeCCeEeechHHHHHHHH
Q 026482 29 TRLYMAY-------TCPFAQRVWITRNYKGLQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLEHNGKIIGESLDLINYVD 101 (238)
Q Consensus 29 ~~Ly~~~-------~sp~~~~v~~~L~~~gipy~~~~~~v~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~ 101 (238)
++||++. .||+|++++++|+++|++| +.+.++. . +.||.|++|+|+++|.+++||.+|++||+
T Consensus 2 ~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~~--~~~~~~~-------~-~~~p~g~vPvl~~~g~~l~eS~~I~~yL~ 71 (75)
T cd03080 2 ITLYQFPRAFGVPSLSPFCLKVETFLRMAGIPY--ENKFGGL-------A-KRSPKGKLPFIELNGEKIADSELIIDHLE 71 (75)
T ss_pred EEEEecCCCCCCCCCCHHHHHHHHHHHHCCCCc--EEeecCc-------c-cCCCCCCCCEEEECCEEEcCHHHHHHHHH
Confidence 5899987 6899999999999999984 4554443 1 38999999999999999999999999999
Q ss_pred hcCC
Q 026482 102 SNFE 105 (238)
Q Consensus 102 ~~~~ 105 (238)
++|+
T Consensus 72 ~~~~ 75 (75)
T cd03080 72 EKYG 75 (75)
T ss_pred HHcC
Confidence 9874
No 58
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=99.59 E-value=9.6e-15 Score=97.92 Aligned_cols=74 Identities=12% Similarity=0.093 Sum_probs=58.8
Q ss_pred CeEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCCChhhhhh---hcCCCCCCCeEEeCCeEeechHHHHHHHHhcC
Q 026482 28 TTRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQDKPAWYKE---KVYPSNKVPSLEHNGKIIGESLDLINYVDSNF 104 (238)
Q Consensus 28 ~~~Ly~~~~sp~~~~v~~~L~~~gipy~~~~~~v~~~~~~~~~~~---~~~p~~~vP~L~~~g~~l~eS~aI~~yL~~~~ 104 (238)
+++||+++.|+.+++++++|+++|++| +.+.++.. +++... ...|.|++|+|++||.+|+||.||++||.+++
T Consensus 1 ~~~Ly~~~~~~~~~~v~~~l~~~gi~~--e~~~v~~~--~~~~~~~~~~~~~~g~vP~L~~~g~~l~ES~AI~~YL~~~~ 76 (79)
T cd03077 1 KPVLHYFNGRGRMESIRWLLAAAGVEF--EEKFIESA--EDLEKLKKDGSLMFQQVPMVEIDGMKLVQTRAILNYIAGKY 76 (79)
T ss_pred CCEEEEeCCCChHHHHHHHHHHcCCCc--EEEEeccH--HHHHhhccccCCCCCCCCEEEECCEEEeeHHHHHHHHHHHc
Confidence 368999999999999999999999985 45555442 222210 12368999999999999999999999999987
Q ss_pred C
Q 026482 105 E 105 (238)
Q Consensus 105 ~ 105 (238)
+
T Consensus 77 ~ 77 (79)
T cd03077 77 N 77 (79)
T ss_pred C
Confidence 6
No 59
>cd03184 GST_C_Omega GST_C family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a re
Probab=99.59 E-value=2e-14 Score=104.85 Aligned_cols=117 Identities=18% Similarity=0.195 Sum_probs=90.5
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhcc-----CCcHHHHhhHHHHHHHHhhccCCCCcccCC-ccHHHHHHhhHHHHHHHHhh
Q 026482 116 KRKFAEELFSYSDTFIKDVSTSFK-----GDTAKEAGPAFDFLEKALDKFDDGPFFLGQ-FSLVDIAYIPFVDGYQMILS 189 (238)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~le~~L~~~~~~~~l~G~-~t~aD~~l~~~l~~~~~~~~ 189 (238)
+|++.+.|..+++.+...++..+. ....+.+.+.++.+|+.|++. +++|++|+ +|+||+++++.+.++.....
T Consensus 2 ~ra~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~-~~~yl~G~~~t~aDi~~~~~~~~~~~~~~ 80 (124)
T cd03184 2 EKAQQKLLLERFSKVVSAFYKLLGAPSDREEKKAELRSALENLEEELTKR-GTPFFGGDSPGMVDYMIWPWFERLEALKL 80 (124)
T ss_pred hHHHHHHHHHHHhhhhHHHHHHHhccccchhhHHHHHHHHHHHHHHHHhc-CCCCcCCCCccHHHHHhhHHHHHHHHHHh
Confidence 477888888888765555544433 245678899999999999831 47999999 99999999999988765432
Q ss_pred hcCCCcccCCChhHHHHHHHHhcCcchhhcccCCChhhHHHHhccc
Q 026482 190 EGFKYDATIGRPKLAAWIEELNKMDVYKQTKYFKDPKQLFEYYKIP 235 (238)
Q Consensus 190 ~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 235 (238)
........+.+|+|.+|+++|.++|+++.++ ++.+.+++++|.+
T Consensus 81 ~~~~~~~~~~~p~l~~w~~r~~~~p~v~~~~--~~~~~~~~~~~~~ 124 (124)
T cd03184 81 LLGYEFPLDRFPKLKKWMDAMKEDPAVQAFY--TDTEIHAEFLKSY 124 (124)
T ss_pred hccccCCcccChHHHHHHHHhccChHHHHHh--CCHHHHHHHHhcC
Confidence 1111112467999999999999999999999 8999999998853
No 60
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=99.57 E-value=9.9e-15 Score=99.08 Aligned_cols=67 Identities=22% Similarity=0.387 Sum_probs=54.8
Q ss_pred CCCchHHHHHHHHHhcCCCCceeEEeccCCCCh---hhhhhhcCCCCCCCeEEeC-CeEeechHHHHHHHHhcCC
Q 026482 35 YTCPFAQRVWITRNYKGLQDEIKLVAFDLQDKP---AWYKEKVYPSNKVPSLEHN-GKIIGESLDLINYVDSNFE 105 (238)
Q Consensus 35 ~~sp~~~~v~~~L~~~gipy~~~~~~v~~~~~~---~~~~~~~~p~~~vP~L~~~-g~~l~eS~aI~~yL~~~~~ 105 (238)
..||||++++++|.++|++|+ .+.++..... .++ . +||.|++|+|+++ |..++||.+|++||+++++
T Consensus 14 ~~Sp~~~kv~~~L~~~~i~~~--~~~~~~~~~~~~~~~~-~-~~p~~~vP~L~~~~~~~l~eS~aI~~yL~~~~p 84 (84)
T cd03038 14 AFSPNVWKTRLALNHKGLEYK--TVPVEFPDIPPILGEL-T-SGGFYTVPVIVDGSGEVIGDSFAIAEYLEEAYP 84 (84)
T ss_pred CcCChhHHHHHHHHhCCCCCe--EEEecCCCcccccccc-c-CCCCceeCeEEECCCCEEeCHHHHHHHHHHhCc
Confidence 579999999999999999854 4455543322 334 3 7999999999988 8999999999999999875
No 61
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=99.57 E-value=1.7e-14 Score=95.93 Aligned_cols=71 Identities=23% Similarity=0.354 Sum_probs=54.4
Q ss_pred eEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCCC---hhhhhhhcCCC-CCCCeEEeC-CeEeechHHHHHHHHh
Q 026482 29 TRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQDK---PAWYKEKVYPS-NKVPSLEHN-GKIIGESLDLINYVDS 102 (238)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~L~~~gipy~~~~~~v~~~~~---~~~~~~~~~p~-~~vP~L~~~-g~~l~eS~aI~~yL~~ 102 (238)
|+|++++.+++++++|++|+++|++ ++.+.++.... .+++++ .||. |++|+|+++ |..++||.||++||++
T Consensus 1 ~~l~l~~~~~~~~~~r~~l~~~gv~--~e~~~v~~~~~~~~~~e~~~-~~p~~g~vP~l~~~~~~~l~es~AI~~YLa~ 76 (76)
T PF02798_consen 1 MTLTLYNGRGRSERIRLLLAEKGVE--YEDVRVDFEKGEHKSPEFLA-INPMFGKVPALEDGDGFVLTESNAILRYLAR 76 (76)
T ss_dssp EEEEEESSSTTTHHHHHHHHHTT----EEEEEEETTTTGGGSHHHHH-HTTTSSSSSEEEETTTEEEESHHHHHHHHHH
T ss_pred CEEEEECCCCchHHHHHHHHHhccc--CceEEEecccccccchhhhh-cccccceeeEEEECCCCEEEcHHHHHHHhCC
Confidence 3555555666899999999999997 55555554322 255554 8999 999999988 9999999999999975
No 62
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.57 E-value=1.5e-14 Score=95.42 Aligned_cols=66 Identities=26% Similarity=0.395 Sum_probs=54.8
Q ss_pred eeCCCchHHHHHHHHHhcCCCCceeEEeccCC--CChhhhhhhcCCCCCCCeEEeCCeEeechHHHHHHHH
Q 026482 33 MAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQ--DKPAWYKEKVYPSNKVPSLEHNGKIIGESLDLINYVD 101 (238)
Q Consensus 33 ~~~~sp~~~~v~~~L~~~gipy~~~~~~v~~~--~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~ 101 (238)
....||++++++++|+++|++|+ .+.++.. ...+++++ +||.|++|+|+++|.+++||.+|++||+
T Consensus 6 ~~~~s~~s~~v~~~L~~~gl~~e--~~~v~~~~~~~~~~~~~-~nP~g~vP~L~~~g~~l~eS~aI~~YL~ 73 (73)
T cd03043 6 NKNYSSWSLRPWLLLKAAGIPFE--EILVPLYTPDTRARILE-FSPTGKVPVLVDGGIVVWDSLAICEYLA 73 (73)
T ss_pred CCCCCHHHHHHHHHHHHcCCCCE--EEEeCCCCccccHHHHh-hCCCCcCCEEEECCEEEEcHHHHHHHhC
Confidence 34679999999999999999854 4445543 34567776 9999999999999999999999999984
No 63
>cd03190 GST_C_ECM4_like GST_C family, ECM4-like subfamily; composed of predominantly uncharacterized and taxonomically diverse proteins with similarity to the translation product of the Saccharomyces cerevisiae gene ECM4. ECM4, a gene of unknown function, is involved in cell surface biosynthesis and architecture. S. cerevisiae ECM4 mutants show increased amounts of the cell wall hexose, N-acetylglucosamine. More recently, global gene expression analysis shows that ECM4 is upregulated during genotoxic conditions and together with the expression profiles of 18 other genes could potentially differentiate between genotoxic and cytotoxic insults in yeast.
Probab=99.56 E-value=2.1e-14 Score=107.25 Aligned_cols=117 Identities=21% Similarity=0.239 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHhhh-hhhhhhhhhcc-------CCcHHHHhhHHHHHHHHhhccCCCCcccCC-ccHHHHHHhhHHHHHH
Q 026482 115 EKRKFAEELFSYSD-TFIKDVSTSFK-------GDTAKEAGPAFDFLEKALDKFDDGPFFLGQ-FSLVDIAYIPFVDGYQ 185 (238)
Q Consensus 115 ~~~~~~~~~~~~~~-~~~~~~~~~~~-------~~~~~~~~~~l~~le~~L~~~~~~~~l~G~-~t~aD~~l~~~l~~~~ 185 (238)
+.++.+++|+++.. .+...++.... ......+.+.++.||+.|+ +++|++|+ +|+||+++++.+.++.
T Consensus 3 ~~~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~LE~~L~---~~~yl~Gd~~TlADi~l~~~l~~~~ 79 (142)
T cd03190 3 ELRSEIDELNEWIYDNINNGVYKAGFATTQEAYDEAVDELFEALDRLEELLS---DRRYLLGDRLTEADIRLFTTLIRFD 79 (142)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHc---cCCeeeCCCccHHHHHHHHHHHHHH
Confidence 35678999999988 44443333321 1234678889999999998 67999999 9999999999998764
Q ss_pred HHhhhcC--CCcccCCChhHHHHHHHHhcCcchhhcccCCChhhHHHHhcccc
Q 026482 186 MILSEGF--KYDATIGRPKLAAWIEELNKMDVYKQTKYFKDPKQLFEYYKIPF 236 (238)
Q Consensus 186 ~~~~~~~--~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 236 (238)
....... +....+.+|+|.+|+++|.++|++++++ ..+..+.+|++.++
T Consensus 80 ~~~~~~~~~~~~~~~~~P~L~~w~~r~~~~P~~k~~~--~~~~~~~~~~~~~~ 130 (142)
T cd03190 80 AVYVQHFKCNLKRIRDYPNLWNYLRRLYQNPGVAETT--NFDHIKQHYYGSHF 130 (142)
T ss_pred HHhhhhcccccchhhhCchHHHHHHHHhcCchHhhhc--CHHHHHHHHHhhcC
Confidence 4321111 1122357999999999999999999999 88999999999875
No 64
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=99.54 E-value=4e-14 Score=91.93 Aligned_cols=70 Identities=34% Similarity=0.517 Sum_probs=58.3
Q ss_pred eEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCCChh-hhhhhcCCCCCCCeEEeCCeEeechHHHHHHHH
Q 026482 29 TRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQDKPA-WYKEKVYPSNKVPSLEHNGKIIGESLDLINYVD 101 (238)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~L~~~gipy~~~~~~v~~~~~~~-~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~ 101 (238)
++||+++.||+|++++++|+++|++|+ .+.++...... ++.. .+|.+++|+|+++|..++||.+|++||+
T Consensus 1 ~~ly~~~~~~~~~~~~~~l~~~~i~~~--~~~~~~~~~~~~~~~~-~~~~~~~P~l~~~~~~~~es~~I~~yl~ 71 (71)
T cd00570 1 LKLYYFPGSPRSLRVRLALEEKGLPYE--LVPVDLGEGEQEEFLA-LNPLGKVPVLEDGGLVLTESLAILEYLA 71 (71)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcE--EEEeCCCCCCCHHHHh-cCCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 579999999999999999999999854 44555433322 3554 8999999999999999999999999984
No 65
>cd03201 GST_C_DHAR GST_C family, Dehydroascorbate Reductase (DHAR) subfamily; composed of plant-specific DHARs, monomeric enzymes catalyzing the reduction of DHA into ascorbic acid (AsA) using glutathione as the reductant. DHAR allows plants to recycle oxidized AsA before it is lost. AsA serves as a cofactor of violaxanthin de-epoxidase in the xanthophyll cycle and as an antioxidant in the detoxification of reactive oxygen species. Because AsA is the major reductant in plants, DHAR serves to regulate their redox state. It has been suggested that a significant portion of DHAR activity is plastidic, acting to reduce the large amounts of ascorbate oxidized during hydrogen peroxide scavenging by ascorbate peroxidase. DHAR contains a conserved cysteine in its active site and in addition to its reductase activity, shows thiol transferase activity similar to glutaredoxins.
Probab=99.54 E-value=1.2e-13 Score=100.12 Aligned_cols=90 Identities=18% Similarity=0.317 Sum_probs=74.3
Q ss_pred cHHHHhhHHHHHHHHhhccCCCCcccCC-ccHHHHHHhhHHHHHHHHhhhcCCCcccCCChhHHHHHHHHhcCcchhhcc
Q 026482 142 TAKEAGPAFDFLEKALDKFDDGPFFLGQ-FSLVDIAYIPFVDGYQMILSEGFKYDATIGRPKLAAWIEELNKMDVYKQTK 220 (238)
Q Consensus 142 ~~~~~~~~l~~le~~L~~~~~~~~l~G~-~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~ 220 (238)
....+.+.++.||+.|++ +++|++|+ +|+||+++++.+.++........+....+.+|+|.+|++++.+||+|++++
T Consensus 31 ~~~~l~~~l~~Le~~L~~--~~~fl~Gd~~TlADi~l~~~l~~l~~~~~~~~~~~~~~~~P~l~~w~~rl~~rps~~~t~ 108 (121)
T cd03201 31 TEQALLDELEALEDHLKE--NGPFINGEKISAVDLSLAPKLYHLEIALGHYKNWSVPESLTSVKSYMKALFSRESFVKTK 108 (121)
T ss_pred HHHHHHHHHHHHHHHHhc--CCCccCCCCCCHHhHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHCCchhhhcC
Confidence 346788899999999983 37899999 999999999988777643333223333478999999999999999999999
Q ss_pred cCCChhhHHHHhccc
Q 026482 221 YFKDPKQLFEYYKIP 235 (238)
Q Consensus 221 ~~~~~~~~~~~~~~~ 235 (238)
+..+.+.++|+.+
T Consensus 109 --~~~~~~~~~~~~~ 121 (121)
T cd03201 109 --AEKEDVIAGWAPK 121 (121)
T ss_pred --CCHHHHHHHhccC
Confidence 8999999999864
No 66
>cd03185 GST_C_Tau GST_C family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropi
Probab=99.49 E-value=2.2e-13 Score=99.44 Aligned_cols=114 Identities=25% Similarity=0.341 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHhhh-hhhhhhhhhc------cCCcHHHHhhHHHHHHHHhhccCCCCcccCC-ccHHHHHHhhHHHHHHH
Q 026482 115 EKRKFAEELFSYSD-TFIKDVSTSF------KGDTAKEAGPAFDFLEKALDKFDDGPFFLGQ-FSLVDIAYIPFVDGYQM 186 (238)
Q Consensus 115 ~~~~~~~~~~~~~~-~~~~~~~~~~------~~~~~~~~~~~l~~le~~L~~~~~~~~l~G~-~t~aD~~l~~~l~~~~~ 186 (238)
.+++++++|+.+.+ .+...+...+ .......+.+.++.||+.|+ +++|++|+ +|+|||++++.+.++..
T Consensus 2 ~~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~---~~~~l~G~~~t~ADi~l~~~~~~~~~ 78 (126)
T cd03185 2 YERAVARFWAAFIDDKLFPAGRKVLAAKGEEREKAKEEALEALKVLEEELG---GKPFFGGDTIGYVDIALGSFLGWFRA 78 (126)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHhc---CCCCCCCCCcchHHHHHHHHHHHHHH
Confidence 46788899988876 3333322111 12345678899999999998 57999999 99999999999998754
Q ss_pred HhhhcCCCc--ccCCChhHHHHHHHHhcCcchhhcccCCChhhHHHHhcc
Q 026482 187 ILSEGFKYD--ATIGRPKLAAWIEELNKMDVYKQTKYFKDPKQLFEYYKI 234 (238)
Q Consensus 187 ~~~~~~~~~--~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 234 (238)
... ..+.+ ..+.+|++.+|++++.++|++++++ +..+.+.+|+++
T Consensus 79 ~~~-~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~--~~~~~~~~~~~~ 125 (126)
T cd03185 79 YEE-VGGVKLLDEEKTPLLAAWAERFLELEAVKEVL--PDRDKLVEFAKA 125 (126)
T ss_pred HHH-HcCccccCcccCchHHHHHHHHHhccHHHHhC--CCHHHHHHHHHh
Confidence 322 11222 1367899999999999999999999 888899888764
No 67
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=99.46 E-value=4.4e-13 Score=88.18 Aligned_cols=64 Identities=27% Similarity=0.323 Sum_probs=53.8
Q ss_pred EEEeeC-------CCchHHHHHHHHHhcCCCCceeEEeccCCCChhhhhhhcCCCCCCCeEEeCCeEeechHHHHHHHHh
Q 026482 30 RLYMAY-------TCPFAQRVWITRNYKGLQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLEHNGKIIGESLDLINYVDS 102 (238)
Q Consensus 30 ~Ly~~~-------~sp~~~~v~~~L~~~gipy~~~~~~v~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~~ 102 (238)
+||.++ .||+|++++++|+++|+| ++.+.++.. ..||.|++|+|+++|..++||.+|++||++
T Consensus 2 ~L~~~~~~~~~~s~sp~~~~v~~~L~~~~i~--~~~~~~~~~--------~~~p~g~vP~l~~~g~~l~es~~I~~yL~~ 71 (72)
T cd03054 2 ELYQWGRAFGLPSLSPECLKVETYLRMAGIP--YEVVFSSNP--------WRSPTGKLPFLELNGEKIADSEKIIEYLKK 71 (72)
T ss_pred EEEEeCCCCCCCCCCHHHHHHHHHHHhCCCc--eEEEecCCc--------ccCCCcccCEEEECCEEEcCHHHHHHHHhh
Confidence 456655 799999999999999998 556655531 168999999999999999999999999987
Q ss_pred c
Q 026482 103 N 103 (238)
Q Consensus 103 ~ 103 (238)
+
T Consensus 72 ~ 72 (72)
T cd03054 72 K 72 (72)
T ss_pred C
Confidence 4
No 68
>cd03196 GST_C_5 GST_C family, unknown subfamily 5; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.40 E-value=2.1e-12 Score=92.88 Aligned_cols=102 Identities=23% Similarity=0.361 Sum_probs=76.6
Q ss_pred CHHHHHHHHHHHHhhh-hhhhhhhhhc-----c----CCcHHHHhhHHHHHHHHhhccCCCCcccCC-ccHHHHHHhhHH
Q 026482 113 DPEKRKFAEELFSYSD-TFIKDVSTSF-----K----GDTAKEAGPAFDFLEKALDKFDDGPFFLGQ-FSLVDIAYIPFV 181 (238)
Q Consensus 113 ~~~~~~~~~~~~~~~~-~~~~~~~~~~-----~----~~~~~~~~~~l~~le~~L~~~~~~~~l~G~-~t~aD~~l~~~l 181 (238)
++..++.+++|..+.+ .+...+.... . ....+.+.+.++.||+.|+ +++|++|+ +|+||+++++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~le~~L~---~~~yl~Gd~~tlADi~l~~~l 79 (115)
T cd03196 3 DPAALKEMLALIAENDNEFKHHLDRYKYADRYPEESEEEYRQQAEAFLKDLEARLQ---QHSYLLGDKPSLADWAIFPFV 79 (115)
T ss_pred chHHHHHHHHHHHHcchhhHHHHHhccchhhcCcccHHHHHHHHHHHHHHHHHHHc---cCCccCCCCccHHHHHHHHHH
Confidence 6788999999999888 4443332211 1 1234588999999999998 57899999 999999999988
Q ss_pred HHHHHHhhhcCCCcccCCChhHHHHHHHHhcCcchhhcc
Q 026482 182 DGYQMILSEGFKYDATIGRPKLAAWIEELNKMDVYKQTK 220 (238)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~ 220 (238)
.++...... ... ..++|+|.+|++++.++|+|++++
T Consensus 80 ~~~~~~~~~--~~~-~~~~P~L~~w~~r~~~rpa~~~~~ 115 (115)
T cd03196 80 RQFAHVDPK--WFD-QSPYPRLRRWLNGFLASPLFSKIM 115 (115)
T ss_pred HHHHHhhhc--ccC-cccCHHHHHHHHHHHcChHHHhhC
Confidence 766432111 111 368999999999999999999864
No 69
>cd03186 GST_C_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.39 E-value=2e-12 Score=91.66 Aligned_cols=97 Identities=20% Similarity=0.267 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHhhhh-hhhhhhhhc------cCCcHHHHhhHHHHHHHHhhccCCCCcccCC-ccHHHHHHhhHHHHHHH
Q 026482 115 EKRKFAEELFSYSDT-FIKDVSTSF------KGDTAKEAGPAFDFLEKALDKFDDGPFFLGQ-FSLVDIAYIPFVDGYQM 186 (238)
Q Consensus 115 ~~~~~~~~~~~~~~~-~~~~~~~~~------~~~~~~~~~~~l~~le~~L~~~~~~~~l~G~-~t~aD~~l~~~l~~~~~ 186 (238)
.++++++.|+.+++. +...+.... .......+.+.++.||+.|+ +++|++|+ +|+|||++++.+.++..
T Consensus 2 ~~ra~~r~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~---~~~~l~G~~~t~aDi~~~~~~~~~~~ 78 (107)
T cd03186 2 VARARSRLLMHRIEQDWYPLVDTIEKGRKKEAEKARKELRESLLALAPVFA---HKPYFMSEEFSLVDCALAPLLWRLPA 78 (107)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHc---CCCcccCCCCcHHHHHHHHHHHHHHH
Confidence 468889999999874 333322211 12234578889999999998 68999999 99999999998754431
Q ss_pred HhhhcCCCcccCCChhHHHHHHHHhcCcchhhc
Q 026482 187 ILSEGFKYDATIGRPKLAAWIEELNKMDVYKQT 219 (238)
Q Consensus 187 ~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~ 219 (238)
.+.++...+|+|.+|++++.+||+++++
T Consensus 79 -----~~~~~~~~~p~l~~w~~~~~~rpa~~~~ 106 (107)
T cd03186 79 -----LGIELPKQAKPLKDYMERVFARDSFQKS 106 (107)
T ss_pred -----cCCCCcccchHHHHHHHHHHCCHHHHHh
Confidence 2434335789999999999999999875
No 70
>cd03209 GST_C_Mu GST_C family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the m
Probab=99.35 E-value=4.3e-12 Score=92.11 Aligned_cols=97 Identities=16% Similarity=0.213 Sum_probs=75.8
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhc--------cCCcHHHHhhHHHHHHHHhhccCCCCcccCC-ccHHHHHHhhHHHHHHH
Q 026482 116 KRKFAEELFSYSDTFIKDVSTSF--------KGDTAKEAGPAFDFLEKALDKFDDGPFFLGQ-FSLVDIAYIPFVDGYQM 186 (238)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~l~~le~~L~~~~~~~~l~G~-~t~aD~~l~~~l~~~~~ 186 (238)
+++++++++..+.++...+.... .....+.+.+.+..||+.|+ +++|++|+ +|+||+++++.+.++..
T Consensus 2 e~~~id~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~---~~~~l~G~~~T~aDi~l~~~~~~~~~ 78 (121)
T cd03209 2 ERIRVDMLEQQAMDLRMGLARICYSPDFEKLKPDYLAKLPDKLKLFSDFLG---DRPWFAGDKITYVDFLLYEALDQHRI 78 (121)
T ss_pred chHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHHHhC---CCCCcCCCCccHHHHHHHHHHHHHHH
Confidence 46788888888877665543322 12234567889999999998 57899999 99999999999988854
Q ss_pred HhhhcCCCcccCCChhHHHHHHHHhcCcchhhcc
Q 026482 187 ILSEGFKYDATIGRPKLAAWIEELNKMDVYKQTK 220 (238)
Q Consensus 187 ~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~ 220 (238)
.. ....+.+|+|.+|++++.++|++++++
T Consensus 79 ~~-----~~~~~~~P~l~~~~~rv~~~p~vk~~~ 107 (121)
T cd03209 79 FE-----PDCLDAFPNLKDFLERFEALPKISAYM 107 (121)
T ss_pred hC-----ccccccChHHHHHHHHHHHCHHHHHHH
Confidence 31 122467999999999999999999998
No 71
>cd03210 GST_C_Pi GST_C family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an incre
Probab=99.35 E-value=4.4e-12 Score=92.71 Aligned_cols=100 Identities=18% Similarity=0.193 Sum_probs=74.8
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhc-------cCCcHHHHhhHHHHHHHHhhccCCCCcccCC-ccHHHHHHhhHHHHHHHH
Q 026482 116 KRKFAEELFSYSDTFIKDVSTSF-------KGDTAKEAGPAFDFLEKALDKFDDGPFFLGQ-FSLVDIAYIPFVDGYQMI 187 (238)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~~le~~L~~~~~~~~l~G~-~t~aD~~l~~~l~~~~~~ 187 (238)
+++.+++++..+.++...+...+ .......+.+.+..||+.|+++++++|++|+ +|+||+++++.+.++...
T Consensus 3 e~~~vd~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~~l~G~~~T~ADi~l~~~~~~~~~~ 82 (126)
T cd03210 3 EAALIDMVNDGVEDLRLKYVRMIYQNYEAGKDDYIKDLPEQLKPFEKLLSKNNGKGFIVGDKISFADYNLFDLLDIHLVL 82 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeeeCCCccHHHHHHHHHHHHHHHh
Confidence 56778888777766555443221 1233456788999999999842135899999 999999999999887543
Q ss_pred hhhcCCCcccCCChhHHHHHHHHhcCcchhhcc
Q 026482 188 LSEGFKYDATIGRPKLAAWIEELNKMDVYKQTK 220 (238)
Q Consensus 188 ~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~ 220 (238)
.. .....+|+|.+|++++.++|+|++++
T Consensus 83 ~~-----~~~~~~P~l~~~~~rv~~~p~v~~~~ 110 (126)
T cd03210 83 AP-----GCLDAFPLLKAFVERLSARPKLKAYL 110 (126)
T ss_pred Ch-----HhhhcChHHHHHHHHHHhCcHHHHHH
Confidence 21 12468999999999999999999998
No 72
>cd03200 GST_C_JTV1 GST_C family, JTV-1 subfamily; composed of uncharacterized proteins with similarity to the translation product of the human JTV-1 gene. Human JTV-1, a gene of unknown function, initiates within the human PMS2 gene promoter, but is transcribed from the opposite strand. PMS2 encodes a protein involved in DNA mismatch repair and is mutated in a subset of patients with hereditary nonpolyposis colon cancer. It is unknown whether the expression of JTV-1 affects that of PMS2, or vice versa, as a result of their juxtaposition. JTV-1 is up-regulated while PMS2 is down-regulated in tumor cell spheroids that show increased resistance to anticancer cytotoxic drugs compared with tumor cell monolayers indicating that suppressed DNA mismatch repair may be a mechanism for multicellular resistance to alkylating agents.
Probab=99.31 E-value=1.8e-11 Score=85.03 Aligned_cols=94 Identities=14% Similarity=0.290 Sum_probs=75.3
Q ss_pred HHHHHhcCCCCCCCCCCHHHHHHHHHHHHhhh-hhhhhhhhhccCCcHHHHhhHHHHHHHHhhccCCCCcccCC-ccHHH
Q 026482 97 INYVDSNFEGPSLLPDDPEKRKFAEELFSYSD-TFIKDVSTSFKGDTAKEAGPAFDFLEKALDKFDDGPFFLGQ-FSLVD 174 (238)
Q Consensus 97 ~~yL~~~~~~~~l~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~~l~G~-~t~aD 174 (238)
++||++.. .++|.++.+.+.+++|+.... ++. .....++.+.++.+|+.|+ +++|++|+ +|+||
T Consensus 1 ~r~~~~~~---~~~~~~~~~~~~vd~~~d~~~~~l~--------~~~~~~~~~~l~~le~~L~---~~~fl~Gd~~tiAD 66 (96)
T cd03200 1 ARFLYRLL---GPAPNAPNAATNIDSWVDTAIFQLA--------EGSSKEKAAVLRALNSALG---RSPWLVGSEFTVAD 66 (96)
T ss_pred CchHHHHh---cccCCCchHHHHHHHHHHHHHHHHh--------cCCHHHHHHHHHHHHHHHc---CCCccCCCCCCHHH
Confidence 47888883 399999999999999999765 443 1346677899999999998 68999999 99999
Q ss_pred HHHhhHHHHHHHHhhhcCCCcccCCChhHHHHHHHHhcC
Q 026482 175 IAYIPFVDGYQMILSEGFKYDATIGRPKLAAWIEELNKM 213 (238)
Q Consensus 175 ~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~ 213 (238)
|++++.+.+. +.. ...+|+|.+|++|+.++
T Consensus 67 i~l~~~l~~~--------~~~-~~~~p~l~~w~~r~~~~ 96 (96)
T cd03200 67 IVSWCALLQT--------GLA-SAAPANVQRWLKSCENL 96 (96)
T ss_pred HHHHHHHHHc--------ccc-cccChHHHHHHHHHHhC
Confidence 9999887542 112 25789999999999863
No 73
>KOG3027 consensus Mitochondrial outer membrane protein Metaxin 2, Metaxin 1-binding protein [Cell wall/membrane/envelope biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.31 E-value=1.7e-11 Score=93.55 Aligned_cols=167 Identities=13% Similarity=0.108 Sum_probs=119.9
Q ss_pred CCeEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCCChhhhhhhcCCCCCCCeEEeCCeEeechHHHHHHHHhcCCC
Q 026482 27 GTTRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLEHNGKIIGESLDLINYVDSNFEG 106 (238)
Q Consensus 27 ~~~~Ly~~~~sp~~~~v~~~L~~~gipy~~~~~~v~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~~~~~~ 106 (238)
..+-|+..+ -|..|..+|+.+++||.+..+ ...++ ++|.|++|.|..|...++|-.+|+.+...+.-.
T Consensus 27 eQiLl~d~a---scLAVqtfLrMcnLPf~v~~~------~Naef---mSP~G~vPllr~g~~~~aef~pIV~fVeak~~~ 94 (257)
T KOG3027|consen 27 EQILLPDNA---SCLAVQTFLRMCNLPFNVRQR------ANAEF---MSPGGKVPLLRIGKTLFAEFEPIVDFVEAKGVT 94 (257)
T ss_pred cccccccch---hHHHHHHHHHHcCCCceeeec------CCccc---cCCCCCCceeeecchhhhhhhHHHHHHHHhccc
Confidence 344444443 368999999999999654432 23344 889999999999999999999999999887632
Q ss_pred CCCC-CCCHHHHHHHHHHHHhhhhhhhh--hhhhc---------------------------------------------
Q 026482 107 PSLL-PDDPEKRKFAEELFSYSDTFIKD--VSTSF--------------------------------------------- 138 (238)
Q Consensus 107 ~~l~-p~~~~~~~~~~~~~~~~~~~~~~--~~~~~--------------------------------------------- 138 (238)
|- .-+..+++.++.++..++.++.. .+-.+
T Consensus 95 --l~s~lsE~qkadmra~vslVen~~t~aEl~~s~~de~ty~~vT~~R~gs~ypWPLs~i~~f~Krr~~~r~lk~~~W~~ 172 (257)
T KOG3027|consen 95 --LTSWLSEDQKADMRAYVSLVENLLTTAELYVSWNDEETYDEVTALRYGSVYPWPLSHILPFVKRRKALRELKVYDWDD 172 (257)
T ss_pred --hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhccCCCCCCcHHHHHHHHHHHHHHHHHhhcCccc
Confidence 21 12344667777777776643321 00000
Q ss_pred --cCCcHHHHhhHHHHHHHHhhccCCCCcccCC-ccHHHHHHhhHHHHHHHHhhhcCCC---cccCCChhHHHHHHHHhc
Q 026482 139 --KGDTAKEAGPAFDFLEKALDKFDDGPFFLGQ-FSLVDIAYIPFVDGYQMILSEGFKY---DATIGRPKLAAWIEELNK 212 (238)
Q Consensus 139 --~~~~~~~~~~~l~~le~~L~~~~~~~~l~G~-~t~aD~~l~~~l~~~~~~~~~~~~~---~~~~~~p~l~~~~~~~~~ 212 (238)
-+++.+++.++++.|+..|+ ..+|+.|+ ||-+|..+|+++..+.+.. .... +..++|++|.++++|+.+
T Consensus 173 ~~~DqVie~vdkc~~aLsa~L~---~q~yf~g~~P~elDAlvFGHlytilTt~--Lpn~ela~~lkkys~LlefcrrIeq 247 (257)
T KOG3027|consen 173 KTMDQVIEQVDKCCRALSAQLG---SQPYFTGDQPTELDALVFGHLYTILTTR--LPNMELANILKKYSNLLEFCRRIEQ 247 (257)
T ss_pred ccHHHHHHHHHHHHHHHHHHhc---CCCccCCCCccHHHHHHHhhhHHhhhhc--CCcHHHHHHHHHhHHHHHHHHHHHH
Confidence 01355788999999999999 78999999 9999999999998886642 1122 234789999999999876
No 74
>cd03188 GST_C_Beta GST_C family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site for
Probab=99.31 E-value=6.4e-12 Score=89.83 Aligned_cols=96 Identities=20% Similarity=0.338 Sum_probs=71.0
Q ss_pred HHHHHHHHHHhhh-hhhhhhhhhc---------------cCCcHHHHhhHHHHHHHHhhccCCCCcccCC-ccHHHHHHh
Q 026482 116 KRKFAEELFSYSD-TFIKDVSTSF---------------KGDTAKEAGPAFDFLEKALDKFDDGPFFLGQ-FSLVDIAYI 178 (238)
Q Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~---------------~~~~~~~~~~~l~~le~~L~~~~~~~~l~G~-~t~aD~~l~ 178 (238)
+++.+++|+.+.. .+...+.... .+...+.+.+.++.+|+.|+ +++|++|+ +|+|||+++
T Consensus 2 ~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~---~~~~l~G~~~t~aDi~~~ 78 (114)
T cd03188 2 ERARLLEWLNFLSSELHKAFGPLFYPARWATDEAAQEEVKAAARERLAARLAYLDAQLA---GGPYLLGDRFSVADAYLF 78 (114)
T ss_pred cHHHHHHHHHHHhhhhchhhhhcccccccccChhhHHHHHHHHHHHHHHHHHHHHHHhc---CCCeeeCCCcchHHHHHH
Confidence 4677888888876 3333221111 11234578899999999998 67899999 999999999
Q ss_pred hHHHHHHHHhhhcCCCcccCCChhHHHHHHHHhcCcchhhcc
Q 026482 179 PFVDGYQMILSEGFKYDATIGRPKLAAWIEELNKMDVYKQTK 220 (238)
Q Consensus 179 ~~l~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~ 220 (238)
+.+.++... +.+ .+++|+|.+|++++.++|+|++++
T Consensus 79 ~~~~~~~~~-----~~~-~~~~p~l~~w~~~~~~~p~~k~~~ 114 (114)
T cd03188 79 VVLRWAPGV-----GLD-LSDWPNLAAYLARVAARPAVQAAL 114 (114)
T ss_pred HHHHHHhhc-----CCC-hhhChHHHHHHHHHHhCHHhHhhC
Confidence 999876431 222 257999999999999999999864
No 75
>cd03208 GST_C_Alpha GST_C family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Alpha subfamily is composed of vertebrate GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GS
Probab=99.31 E-value=1.1e-11 Score=91.92 Aligned_cols=100 Identities=15% Similarity=0.139 Sum_probs=75.7
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhcc--C---------CcHHHHhhHHHHHHHHhhccCCCCcccCC-ccHHHHHHhhHHHH
Q 026482 116 KRKFAEELFSYSDTFIKDVSTSFK--G---------DTAKEAGPAFDFLEKALDKFDDGPFFLGQ-FSLVDIAYIPFVDG 183 (238)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~--~---------~~~~~~~~~l~~le~~L~~~~~~~~l~G~-~t~aD~~l~~~l~~ 183 (238)
+.+.++++++.+.++...++.... . ...+.+.+.++.||+.|+.+ +++|++|+ +|+||+++++.+.+
T Consensus 3 e~a~iD~i~~~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lE~~L~~~-~~~~l~G~~~T~ADi~l~~~l~~ 81 (137)
T cd03208 3 ERALIDMYVEGTADLMEMILMLPFLPPEEKEAKLALIKEKAKNRYFPVFEKVLKSH-GQDFLVGNKLSRADIHLLEAILM 81 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCeeeCCCCCHHHHHHHHHHHH
Confidence 567888888888776665543321 1 11234578999999999742 56899999 99999999999988
Q ss_pred HHHHhhhcCCCcccCCChhHHHHHHHHhcCcchhhccc
Q 026482 184 YQMILSEGFKYDATIGRPKLAAWIEELNKMDVYKQTKY 221 (238)
Q Consensus 184 ~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~ 221 (238)
+.... ......+|+|.+|++++.++|++++++.
T Consensus 82 ~~~~~-----~~~l~~~P~l~~~~~rv~~~P~vk~~~~ 114 (137)
T cd03208 82 VEELD-----PSLLSDFPLLQAFKTRISNLPTIKKFLQ 114 (137)
T ss_pred HHHhc-----hhhhccChHHHHHHHHHHcCHHHHHHHh
Confidence 75432 2224679999999999999999999994
No 76
>cd03182 GST_C_GTT2_like GST_C family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensiti
Probab=99.28 E-value=2.7e-11 Score=87.15 Aligned_cols=96 Identities=18% Similarity=0.291 Sum_probs=72.4
Q ss_pred CHHHHHHHHHHHHhhh-hhhhhhhhhc-------------------cCCcHHHHhhHHHHHHHHhhccCCCCcccCC-cc
Q 026482 113 DPEKRKFAEELFSYSD-TFIKDVSTSF-------------------KGDTAKEAGPAFDFLEKALDKFDDGPFFLGQ-FS 171 (238)
Q Consensus 113 ~~~~~~~~~~~~~~~~-~~~~~~~~~~-------------------~~~~~~~~~~~l~~le~~L~~~~~~~~l~G~-~t 171 (238)
++.+++.+++|+.+.+ .+...+...+ .......+.+.+..||+.|+ +++|++|+ +|
T Consensus 1 d~~~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~---~~~~l~gd~~t 77 (117)
T cd03182 1 TPLERAQIEMWQRRAELQGLYPIGQAFRHATPGLKPPDREEQVPEWGERSKARAADFLAYLDTRLA---GSPYVAGDRFT 77 (117)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCccccccCHHHHHHHHHHHHHHHHHHHHHhc---CCCcccCCCCC
Confidence 4678899999999876 4433221111 01233678899999999998 57899999 99
Q ss_pred HHHHHHhhHHHHHHHHhhhcCCCcccCCChhHHHHHHHHhcCcch
Q 026482 172 LVDIAYIPFVDGYQMILSEGFKYDATIGRPKLAAWIEELNKMDVY 216 (238)
Q Consensus 172 ~aD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~ 216 (238)
+|||++++.+.++... +.++...+|+|.+|++++.++|++
T Consensus 78 ~aDi~l~~~~~~~~~~-----~~~~~~~~p~l~~w~~~~~~~p~~ 117 (117)
T cd03182 78 IADITAFVGLDFAKVV-----KLRVPEELTHLRAWYDRMAARPSA 117 (117)
T ss_pred HHHHHHHHHhHHHHhc-----CCCCccccHHHHHHHHHHHhccCC
Confidence 9999999999877542 344446799999999999999975
No 77
>cd03178 GST_C_Ure2p_like GST_C family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The N-terminal thioredoxin-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of GSH with a wide range of en
Probab=99.23 E-value=1.3e-11 Score=88.22 Aligned_cols=71 Identities=23% Similarity=0.443 Sum_probs=59.8
Q ss_pred cHHHHhhHHHHHHHHhhccCCCCcccCC-ccHHHHHHhhHHHHHHHHhhhcCCCcccCCChhHHHHHHHHhcCcchhhcc
Q 026482 142 TAKEAGPAFDFLEKALDKFDDGPFFLGQ-FSLVDIAYIPFVDGYQMILSEGFKYDATIGRPKLAAWIEELNKMDVYKQTK 220 (238)
Q Consensus 142 ~~~~~~~~l~~le~~L~~~~~~~~l~G~-~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~ 220 (238)
...++.+.++.+|+.|+ +++|++|+ +|+|||++++.+.+.... +.+..+.+|++.+|++++.++|++++++
T Consensus 41 ~~~~~~~~l~~le~~L~---~~~~l~G~~~t~aDi~l~~~~~~~~~~-----~~~~~~~~p~l~~w~~~~~~~p~~~~~~ 112 (113)
T cd03178 41 YTNEAKRLYGVLDKRLA---GRDYLAGDEYSIADIAIFPWVRRLEWI-----GIDDLDDFPNVKRWLDRIAARPAVQRGL 112 (113)
T ss_pred HHHHHHHHHHHHHHHHc---cCCcccCCCCCeeeeeHHHHHHHHHhc-----cccchhhchHHHHHHHHHhhCHHHHHhc
Confidence 34678889999999998 67899999 999999999999887543 2223467999999999999999999875
No 78
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=99.22 E-value=6.1e-11 Score=77.66 Aligned_cols=60 Identities=17% Similarity=0.138 Sum_probs=47.9
Q ss_pred CCCchHHHHHHHHHhcCCCCceeEEeccCCCChhhhhhhcCCCCCCCeEEeCCeEeechHHHHHHHHhc
Q 026482 35 YTCPFAQRVWITRNYKGLQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLEHNGKIIGESLDLINYVDSN 103 (238)
Q Consensus 35 ~~sp~~~~v~~~L~~~gipy~~~~~~v~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~~~ 103 (238)
+.+++|.+++++|++.|+||+ .+.+. . . . ..+|.|+||+|++||.+|+||.+|+.||.++
T Consensus 15 ~~~~~~~kv~~~L~elglpye--~~~~~--~-~-~---~~~P~GkVP~L~~dg~vI~eS~aIl~yL~~~ 74 (74)
T cd03079 15 PDNASCLAVQTFLKMCNLPFN--VRCRA--N-A-E---FMSPSGKVPFIRVGNQIVSEFGPIVQFVEAK 74 (74)
T ss_pred CCCCCHHHHHHHHHHcCCCcE--EEecC--C-c-c---ccCCCCcccEEEECCEEEeCHHHHHHHHhcC
Confidence 457789999999999999864 43321 1 1 1 2578999999999999999999999999764
No 79
>cd03187 GST_C_Phi GST_C family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes a
Probab=99.22 E-value=3.1e-11 Score=86.86 Aligned_cols=71 Identities=20% Similarity=0.410 Sum_probs=58.4
Q ss_pred HHHHhhHHHHHHHHhhccCCCCcccCC-ccHHHHHHhhHHHHHHHHhhhcCCCcccCCChhHHHHHHHHhcCcchhhcc
Q 026482 143 AKEAGPAFDFLEKALDKFDDGPFFLGQ-FSLVDIAYIPFVDGYQMILSEGFKYDATIGRPKLAAWIEELNKMDVYKQTK 220 (238)
Q Consensus 143 ~~~~~~~l~~le~~L~~~~~~~~l~G~-~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~ 220 (238)
...+.+.++.||+.|+ +++|++|+ +|+|||++++++.++.... .....+.+|+|.+|++++.++|++++++
T Consensus 47 ~~~~~~~l~~le~~L~---~~~~l~G~~~t~aDi~l~~~~~~~~~~~----~~~~~~~~p~l~~~~~~~~~~p~~~~~~ 118 (118)
T cd03187 47 EEKLKKVLDVYEARLS---KSKYLAGDSFTLADLSHLPYLQYLMATP----FAKLFDSRPHVKAWWEDISARPAWKKVL 118 (118)
T ss_pred HHHHHHHHHHHHHHcc---cCcccCCCCccHHHHHHHHHHHHHHHcc----chhhhhcCchHHHHHHHHHhCHHHHhhC
Confidence 4678899999999998 67999999 9999999999998874311 1112357999999999999999998764
No 80
>PF00043 GST_C: Glutathione S-transferase, C-terminal domain; InterPro: IPR004046 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of cephalopods is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold. Each monomer is composed of a distinct N-terminal sub-domain, which adopts the thioredoxin fold, and a C-terminal all-helical sub-domain. This entry is the C-terminal domain.; PDB: 3UAP_A 3UAR_A 3QAV_A 3QAW_A 1Y6E_A 1U88_B 4AI6_B 1UA5_A 4AKH_A 3QMZ_S ....
Probab=99.22 E-value=6.2e-11 Score=81.98 Aligned_cols=66 Identities=27% Similarity=0.509 Sum_probs=56.4
Q ss_pred CcHHHHhhHHHHHHHHhhccCCCCcccCC-ccHHHHHHhhHHHHHHHHhhhcCCCccc-CCChhHHHHHHHHhcCc
Q 026482 141 DTAKEAGPAFDFLEKALDKFDDGPFFLGQ-FSLVDIAYIPFVDGYQMILSEGFKYDAT-IGRPKLAAWIEELNKMD 214 (238)
Q Consensus 141 ~~~~~~~~~l~~le~~L~~~~~~~~l~G~-~t~aD~~l~~~l~~~~~~~~~~~~~~~~-~~~p~l~~~~~~~~~~p 214 (238)
.....+.+.++.+|+.|+ +++|++|+ +|+||+++++.+.++..... ... +++|+|.+|++++.+||
T Consensus 28 ~~~~~~~~~l~~le~~l~---~~~~l~G~~~t~ADi~~~~~~~~~~~~~~-----~~~~~~~P~l~~w~~~~~~~P 95 (95)
T PF00043_consen 28 EARAKVPRYLEVLEKRLK---GGPYLVGDKLTIADIALFPMLDWLERLGP-----DFLFEKFPKLKKWYERMFARP 95 (95)
T ss_dssp HHHHHHHHHHHHHHHHHH---TSSSSSBSS-CHHHHHHHHHHHHHHHHTT-----TTTHTTSHHHHHHHHHHHTSH
T ss_pred HHHHHHHHHHHHHHHHHc---CCCeeeccCCchhHHHHHHHHHHHHHhCC-----CcccccCHHHHHHHHHHHcCC
Confidence 445778999999999999 79999999 99999999999999877643 223 78999999999999997
No 81
>cd03189 GST_C_GTT1_like GST_C family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endopl
Probab=99.21 E-value=9.9e-11 Score=84.45 Aligned_cols=95 Identities=17% Similarity=0.217 Sum_probs=71.1
Q ss_pred CCCHHHHHHHHHHHHhhh-hhhhhhh----h-hccC----------------CcHHHHhhHHHHHHHHhhccCCCCcccC
Q 026482 111 PDDPEKRKFAEELFSYSD-TFIKDVS----T-SFKG----------------DTAKEAGPAFDFLEKALDKFDDGPFFLG 168 (238)
Q Consensus 111 p~~~~~~~~~~~~~~~~~-~~~~~~~----~-~~~~----------------~~~~~~~~~l~~le~~L~~~~~~~~l~G 168 (238)
|.++.+++++++|+.+.. .+...+. . .+.. .....+.+.++.||+.|+ +++|++|
T Consensus 2 ~~~~~~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~---~~~~l~G 78 (119)
T cd03189 2 PPDTAEYADYLYWLHFAEGSLMPPLLLKLVLSRIGSAPPPIANKIADKVLAGFINPELKKHLDFLEDRLA---KKGYFVG 78 (119)
T ss_pred CCCHHHHHHHHHHHHHHhHhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHhHHHHHHHHHHHHHHc---cCCCCCC
Confidence 568889999999998876 3333221 1 1111 122468889999999998 6799999
Q ss_pred C-ccHHHHHHhhHHHHHHHHhhhcCCCcccCCChhHHHHHHHHhcCc
Q 026482 169 Q-FSLVDIAYIPFVDGYQMILSEGFKYDATIGRPKLAAWIEELNKMD 214 (238)
Q Consensus 169 ~-~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p 214 (238)
+ +|+||+++++.+.++... +.. ...+|+|.+|++++.++|
T Consensus 79 d~~t~ADi~l~~~~~~~~~~-----~~~-~~~~p~l~~w~~~~~~~p 119 (119)
T cd03189 79 DKLTAADIMMSFPLEAALAR-----GPL-LEKYPNIAAYLERIEARP 119 (119)
T ss_pred CCCCHHHHHHHHHHHHHHHc-----Ccc-cccCchHHHHHHHHhcCC
Confidence 9 999999999998877432 222 467999999999999987
No 82
>cd03191 GST_C_Zeta GST_C family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates, but display modest GSH peroxidase activity. They are also implicated in the detoxification of th
Probab=99.21 E-value=5.9e-11 Score=85.97 Aligned_cols=99 Identities=21% Similarity=0.193 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHhhh-hhhhh----hhhhc----c-------CCcHHHHhhHHHHHHHHhhccCCCCcccCC-ccHHHHHH
Q 026482 115 EKRKFAEELFSYSD-TFIKD----VSTSF----K-------GDTAKEAGPAFDFLEKALDKFDDGPFFLGQ-FSLVDIAY 177 (238)
Q Consensus 115 ~~~~~~~~~~~~~~-~~~~~----~~~~~----~-------~~~~~~~~~~l~~le~~L~~~~~~~~l~G~-~t~aD~~l 177 (238)
.+++.+++|+.+.. .+... ++... . ....+.+.+.++.||+.|+++ +++|++|+ +|+|||++
T Consensus 2 ~~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~-~~~~l~G~~~t~ADi~~ 80 (121)
T cd03191 2 KKRARVRALALIIACDIHPLNNLRVLKYLTEELGLDEEAKNAWYRHWIARGFAALEKLLAQT-AGKFCFGDEPTLADICL 80 (121)
T ss_pred hhHHHHHHHHHHHHccCCccccHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCeecCCcCCHHHHHH
Confidence 46788888888876 33221 11111 0 012245788999999999741 24799999 99999999
Q ss_pred hhHHHHHHHHhhhcCCCcccCCChhHHHHHHHHhcCcchhhcc
Q 026482 178 IPFVDGYQMILSEGFKYDATIGRPKLAAWIEELNKMDVYKQTK 220 (238)
Q Consensus 178 ~~~l~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~ 220 (238)
++.+.++... +.+ .+.+|+|.+|++++.++|+|+++.
T Consensus 81 ~~~~~~~~~~-----~~~-~~~~p~l~~w~~~~~~~p~~~~~~ 117 (121)
T cd03191 81 VPQVYNARRF-----GVD-LSPYPTIARINEACLELPAFQAAH 117 (121)
T ss_pred HHHHHHHHHh-----CCC-cccCcHHHHHHHHHHhChhHHHhC
Confidence 9998766432 333 267899999999999999999988
No 83
>cd03177 GST_C_Delta_Epsilon GST_C family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites th
Probab=99.18 E-value=1.2e-10 Score=84.02 Aligned_cols=71 Identities=23% Similarity=0.519 Sum_probs=59.4
Q ss_pred cHHHHhhHHHHHHHHhhccCCCCcccCC-ccHHHHHHhhHHHHHHHHhhhcCCCcccCCChhHHHHHHHHhcCcchhhcc
Q 026482 142 TAKEAGPAFDFLEKALDKFDDGPFFLGQ-FSLVDIAYIPFVDGYQMILSEGFKYDATIGRPKLAAWIEELNKMDVYKQTK 220 (238)
Q Consensus 142 ~~~~~~~~l~~le~~L~~~~~~~~l~G~-~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~ 220 (238)
....+.+.++.||+.|+ +++|++|+ +|+||+++++.+.++... .+.+ ...+|+|.+|+++|.++|++++..
T Consensus 39 ~~~~~~~~l~~le~~L~---~~~~l~G~~~s~aDi~l~~~~~~~~~~----~~~~-~~~~p~l~~w~~~~~~~p~~~~~~ 110 (118)
T cd03177 39 KLDKLEEALDFLETFLE---GSDYVAGDQLTIADLSLVATVSTLEAL----LPLD-LSKYPNVRAWLERLKALPPYEEAN 110 (118)
T ss_pred HHHHHHHHHHHHHHHHc---cCCeeCCCCcCHHHHHHHHHHHHHHHh----cCCC-hhhCchHHHHHHHHHcccchHHHH
Confidence 45678999999999997 57899999 999999999999888531 1222 256899999999999999999865
No 84
>cd03181 GST_C_EFB1gamma GST_C family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role
Probab=99.17 E-value=6.9e-11 Score=85.74 Aligned_cols=73 Identities=15% Similarity=0.224 Sum_probs=59.8
Q ss_pred cHHHHhhHHHHHHHHhhccCCCCcccCC-ccHHHHHHhhHHHHHHHHhhhcCCCcccCCChhHHHHHHHHhcCcchhhcc
Q 026482 142 TAKEAGPAFDFLEKALDKFDDGPFFLGQ-FSLVDIAYIPFVDGYQMILSEGFKYDATIGRPKLAAWIEELNKMDVYKQTK 220 (238)
Q Consensus 142 ~~~~~~~~l~~le~~L~~~~~~~~l~G~-~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~ 220 (238)
....+.+.++.||+.|+ +++|++|+ +|+||+++++.+.++..... +......+|++.+|.+++.++|+|++++
T Consensus 41 ~~~~~~~~l~~le~~l~---~~~~l~G~~~siaDi~l~~~~~~~~~~~~---~~~~~~~~p~l~~w~~~~~~~p~~~~~~ 114 (123)
T cd03181 41 ALEELDRVLGVLEERLL---KRTYLVGERLTLADIFVAGALLLGFTYVF---DKEWRAKYPNVTRWFNTVVNQPIFKAVF 114 (123)
T ss_pred HHHHHHHHHHHHHHHHc---cCceeccCCccHHHHHHHHHHHHHHHHHc---CHHHHHhChHHHHHHHHHHcCHHHHHHc
Confidence 34567889999999998 67899999 99999999999988743211 1112357899999999999999999998
No 85
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.17 E-value=2.3e-10 Score=76.58 Aligned_cols=76 Identities=21% Similarity=0.323 Sum_probs=62.6
Q ss_pred CCCCCCeEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCCChhhhhhhcCCCCCCCeEEeCCeEeechHHHHHHHH
Q 026482 23 PLFDGTTRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLEHNGKIIGESLDLINYVD 101 (238)
Q Consensus 23 ~~~~~~~~Ly~~~~sp~~~~v~~~L~~~gipy~~~~~~v~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~ 101 (238)
+..+++++||+.++||+|.+++.+|...|++ |+.++++.......+.. .++..++|++..||..+.++..|.+||.
T Consensus 4 ~~~~~~V~ly~~~~Cp~C~~ak~~L~~~gi~--y~~idi~~~~~~~~~~~-~~g~~~vP~i~i~g~~igG~~~l~~~l~ 79 (79)
T TIGR02190 4 ARKPESVVVFTKPGCPFCAKAKATLKEKGYD--FEEIPLGNDARGRSLRA-VTGATTVPQVFIGGKLIGGSDELEAYLA 79 (79)
T ss_pred cCCCCCEEEEECCCCHhHHHHHHHHHHcCCC--cEEEECCCChHHHHHHH-HHCCCCcCeEEECCEEEcCHHHHHHHhC
Confidence 3467889999999999999999999999997 55666654433344443 6778999999999999999999999984
No 86
>cd03183 GST_C_Theta GST_C family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenatio
Probab=99.16 E-value=7.7e-11 Score=85.97 Aligned_cols=71 Identities=28% Similarity=0.518 Sum_probs=57.5
Q ss_pred HHHHhhHHHHHHHHhhccCCCCcccCC-ccHHHHHHhhHHHHHHHHhhhcCCCcccCCChhHHHHHHHHhc--Ccchhhc
Q 026482 143 AKEAGPAFDFLEKALDKFDDGPFFLGQ-FSLVDIAYIPFVDGYQMILSEGFKYDATIGRPKLAAWIEELNK--MDVYKQT 219 (238)
Q Consensus 143 ~~~~~~~l~~le~~L~~~~~~~~l~G~-~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~--~p~~~~~ 219 (238)
.+.+.+.++.+|+.|.+ +++|++|+ +|+|||++++.+.+.... +.+...++|+|.+|++++.+ ||+++++
T Consensus 47 ~~~~~~~l~~le~~l~~--~~~~l~Gd~~t~ADi~l~~~~~~~~~~-----~~~~~~~~p~l~~w~~~~~~~~~p~~~~~ 119 (126)
T cd03183 47 EENLEESLDLLENYFLK--DKPFLAGDEISIADLSAVCEIMQPEAA-----GYDVFEGRPKLAAWRKRVKEAGNPLFDEA 119 (126)
T ss_pred HHHHHHHHHHHHHHHhc--CCCcccCCCCCHHHHHHHHHHHHHHhc-----CCcccccCchHHHHHHHHHHhcchhHHHH
Confidence 45688899999997542 57899999 999999999988766432 33334689999999999999 9999887
Q ss_pred c
Q 026482 220 K 220 (238)
Q Consensus 220 ~ 220 (238)
.
T Consensus 120 ~ 120 (126)
T cd03183 120 H 120 (126)
T ss_pred H
Confidence 6
No 87
>cd03180 GST_C_2 GST_C family, unknown subfamily 2; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.14 E-value=2.4e-10 Score=81.05 Aligned_cols=65 Identities=18% Similarity=0.322 Sum_probs=53.6
Q ss_pred HHHHhhHHHHHHHHhhccCCCCcccCC-ccHHHHHHhhHHHHHHHHhhhcCCCcccCCChhHHHHHHHHhcCcch
Q 026482 143 AKEAGPAFDFLEKALDKFDDGPFFLGQ-FSLVDIAYIPFVDGYQMILSEGFKYDATIGRPKLAAWIEELNKMDVY 216 (238)
Q Consensus 143 ~~~~~~~l~~le~~L~~~~~~~~l~G~-~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~ 216 (238)
.+.+.+.++.+|+.|+ +++|++|+ +|+||+++++.+..+... +.. ..++|+|.+|++++.++|+|
T Consensus 45 ~~~~~~~l~~lE~~L~---~~~~l~g~~~t~aDi~~~~~~~~~~~~-----~~~-~~~~p~l~~~~~~~~~~p~~ 110 (110)
T cd03180 45 LAAWAKLMAILDAQLA---GRPYLAGDRFTLADIPLGCSAYRWFEL-----PIE-RPPLPHLERWYARLRARPAF 110 (110)
T ss_pred HHHHHHHHHHHHHHhC---CCCcccCCCCCHHHHHHHHHHHHHHHc-----ccc-cccCchHHHHHHHHHhCCCC
Confidence 4578999999999998 57899999 999999999988544221 122 46899999999999999986
No 88
>cd03195 GST_C_4 GST_C family, unknown subfamily 4; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.13 E-value=2.4e-10 Score=81.98 Aligned_cols=96 Identities=9% Similarity=0.092 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHhhh-hhhhhhh----hh-cc--------CCcHHHHhhHHHHHHHHhhccCCCCcccCCccHHHHHHhhH
Q 026482 115 EKRKFAEELFSYSD-TFIKDVS----TS-FK--------GDTAKEAGPAFDFLEKALDKFDDGPFFLGQFSLVDIAYIPF 180 (238)
Q Consensus 115 ~~~~~~~~~~~~~~-~~~~~~~----~~-~~--------~~~~~~~~~~l~~le~~L~~~~~~~~l~G~~t~aD~~l~~~ 180 (238)
.+++++++|+.++. ++..... .. +. +.....+.+.+..+|..|+. +++||+|++|+||+++++.
T Consensus 2 ~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~--~~~~l~G~fSiAD~~l~~~ 79 (114)
T cd03195 2 RQRARARQVQAWLRSDLLPIRVERSTEVVFAGAKAEPLSEAAQAAAEKLIAVAEALLPP--GAANLFGEWCIADTDLALM 79 (114)
T ss_pred HhhHHHHHHHHHHHhhHHHHHHhCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHHhc--CCCcccCCccHHHHHHHHH
Confidence 46888999999888 4432110 11 11 12345678888889999962 5589999999999999999
Q ss_pred HHHHHHHhhhcCCCcccCCChhHHHHHHHHhcCcchhhcc
Q 026482 181 VDGYQMILSEGFKYDATIGRPKLAAWIEELNKMDVYKQTK 220 (238)
Q Consensus 181 l~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~ 220 (238)
+.|+... +.++ . |++.+|++|+.+||+|++.+
T Consensus 80 ~~~~~~~-----g~~l-~--p~l~ay~~r~~~rPa~~~~~ 111 (114)
T cd03195 80 LNRLVLN-----GDPV-P--ERLRDYARRQWQRPSVQAWL 111 (114)
T ss_pred HHHHHHc-----CCCC-C--HHHHHHHHHHHCCHHHHHHH
Confidence 9888553 4554 2 99999999999999999876
No 89
>cd03207 GST_C_8 GST_C family, unknown subfamily 8; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.13 E-value=1.7e-10 Score=81.11 Aligned_cols=69 Identities=20% Similarity=0.322 Sum_probs=59.6
Q ss_pred cHHHHhhHHHHHHHHhhccCCCCcccCC-ccHHHHHHhhHHHHHHHHhhhcCCCcccCCChhHHHHHHHHhcCcchhhcc
Q 026482 142 TAKEAGPAFDFLEKALDKFDDGPFFLGQ-FSLVDIAYIPFVDGYQMILSEGFKYDATIGRPKLAAWIEELNKMDVYKQTK 220 (238)
Q Consensus 142 ~~~~~~~~l~~le~~L~~~~~~~~l~G~-~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~ 220 (238)
....+.+.++.||+.|+ +++|++|+ +|+|||++++.+.+.... + ....+|+|.+|++++.++|+++++.
T Consensus 31 ~~~~~~~~l~~le~~l~---~~~~l~g~~~t~aDi~~~~~~~~~~~~-----~--~~~~~p~l~~w~~~~~~~p~~~~~~ 100 (103)
T cd03207 31 GFGSYDDVLAALEQALA---KGPYLLGERFTAADVLVGSPLGWGLQF-----G--LLPERPAFDAYIARITDRPAFQRAA 100 (103)
T ss_pred hhhhHHHHHHHHHHHHc---cCCcccCCccCHHHHHHHHHHHHHHHc-----C--CCCCChHHHHHHHHHHcCHHHHHHh
Confidence 35678999999999998 67899999 999999999999887432 2 2357999999999999999999887
No 90
>PF13410 GST_C_2: Glutathione S-transferase, C-terminal domain; PDB: 4DEJ_H 3IC8_A 2JL4_A 2V6K_B 3CBU_B 1JLW_B 3F6D_B 3G7I_A 3F63_A 3G7J_B ....
Probab=99.10 E-value=3.1e-10 Score=73.80 Aligned_cols=62 Identities=37% Similarity=0.621 Sum_probs=50.7
Q ss_pred cHHHHhhHHHHHHHHhhccCCCCcccCC-ccHHHHHHhhHHHHHHHHhhhcCCCcccCCChhHHHHHHH
Q 026482 142 TAKEAGPAFDFLEKALDKFDDGPFFLGQ-FSLVDIAYIPFVDGYQMILSEGFKYDATIGRPKLAAWIEE 209 (238)
Q Consensus 142 ~~~~~~~~l~~le~~L~~~~~~~~l~G~-~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~~~~~ 209 (238)
....+.+.++.||+.|+ +++|++|+ +|+||+++++.+.++..... +.++...+|+|.+|++|
T Consensus 7 ~~~~~~~~l~~le~~L~---~~~fl~G~~~s~aD~~l~~~l~~~~~~~~---~~~~~~~~p~l~~w~~r 69 (69)
T PF13410_consen 7 ARAQLEAALDALEDHLA---DGPFLFGDRPSLADIALAPFLWRLRFVGP---DFDLLEAYPNLRAWYER 69 (69)
T ss_dssp HHHHHHHHHHHHHHHHT---TSSBTTBSS--HHHHHHHHHHHHHHHCTH---TCCHHTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh---hCCCCCCCCCCHHHHHHHHHHHHHHHhCc---CcCccccCHHHHHHHhC
Confidence 46788999999999999 67799999 99999999999999977643 22445789999999986
No 91
>cd03204 GST_C_GDAP1 GST_C family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal thioredoxin-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=99.08 E-value=4.7e-10 Score=79.63 Aligned_cols=70 Identities=20% Similarity=0.324 Sum_probs=56.0
Q ss_pred cHHHHhhHHHHHHHHhhccC-------CCCcccCC-ccHHHHHHhhHHHHHHHHhhhcCCCcc----cCCChhHHHHHHH
Q 026482 142 TAKEAGPAFDFLEKALDKFD-------DGPFFLGQ-FSLVDIAYIPFVDGYQMILSEGFKYDA----TIGRPKLAAWIEE 209 (238)
Q Consensus 142 ~~~~~~~~l~~le~~L~~~~-------~~~~l~G~-~t~aD~~l~~~l~~~~~~~~~~~~~~~----~~~~p~l~~~~~~ 209 (238)
...++.+.++.||+.|+++. +++|++|+ +|+|||++++.+.++... +.+. ...+|+|.+|++|
T Consensus 30 ~~~~l~~~l~~LE~~L~~~~~~~~~~~~~~yL~Gd~~TlADi~l~~~l~~~~~~-----~~~~~~~~~~~~P~l~~w~~r 104 (111)
T cd03204 30 ILDELEMVLDQVEQELQRRKEETEEQKCQLWLCGDTFTLADISLGVTLHRLKFL-----GLSRRYWGNGKRPNLEAYFER 104 (111)
T ss_pred HHHHHHHHHHHHHHHHHcCCcccccccCCCccCCCCCCHHHHHHHHHHHHHHHc-----CccccccccccChHHHHHHHH
Confidence 45788999999999998420 12599999 999999999999888543 2221 2579999999999
Q ss_pred HhcCcch
Q 026482 210 LNKMDVY 216 (238)
Q Consensus 210 ~~~~p~~ 216 (238)
+.+||+|
T Consensus 105 v~aRpsf 111 (111)
T cd03204 105 VLQRESF 111 (111)
T ss_pred HHcCCCC
Confidence 9999986
No 92
>PF14497 GST_C_3: Glutathione S-transferase, C-terminal domain; PDB: 3AY8_A 2UZ8_B 1V2A_C 2HNL_A 2YV9_B 3H1N_A 3FR6_A 1Q4J_B 1PA3_B 1OKT_B ....
Probab=99.00 E-value=8.8e-10 Score=76.97 Aligned_cols=92 Identities=25% Similarity=0.378 Sum_probs=59.1
Q ss_pred CHHHHHHHHHHHHhhh----hhhhhh-hhhccCCcHHHHhhHHHHHHHHhhccCCCCcccCC-ccHHHHHHhhHHHHHHH
Q 026482 113 DPEKRKFAEELFSYSD----TFIKDV-STSFKGDTAKEAGPAFDFLEKALDKFDDGPFFLGQ-FSLVDIAYIPFVDGYQM 186 (238)
Q Consensus 113 ~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~l~~le~~L~~~~~~~~l~G~-~t~aD~~l~~~l~~~~~ 186 (238)
++..++.+++|+.+.. ...... .........+++.+.+..+|+.|+.+ +++|++|+ ||+||+++|+.|..+..
T Consensus 2 ~~~~~a~i~~W~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~L~~~-~~~~l~G~~~T~AD~~v~~~l~~~~~ 80 (99)
T PF14497_consen 2 DPYWRALIDRWLDFSVAFRRRKARLEKDEASGDFSREELPKALKILEKHLAER-GGDFLVGDKPTLADIAVFGFLASLRW 80 (99)
T ss_dssp --TTHHHHHHHHH-GHCCHCCHCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHT-SSSSSSSSS--HHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHhccchhhhHHHHHHHhhhhHHhhHHHHHHHHHHHHHHHHcC-CCeeecCCCCCHHHHHHHHHHHHHhh
Confidence 3456677777777431 000000 00112344678999999999999963 33399999 99999999999966642
Q ss_pred HhhhcCCCcccCCChhHHHHHHHHhc
Q 026482 187 ILSEGFKYDATIGRPKLAAWIEELNK 212 (238)
Q Consensus 187 ~~~~~~~~~~~~~~p~l~~~~~~~~~ 212 (238)
. ++.+++|+|.+|++||++
T Consensus 81 ------~-~~~~~~p~L~~w~~ri~~ 99 (99)
T PF14497_consen 81 ------A-DFPKDYPNLVRWYERIEE 99 (99)
T ss_dssp ------C-HHTTTCHHHHHHHHHHHT
T ss_pred ------c-ccccccHHHHHHHHhhcC
Confidence 1 122689999999999974
No 93
>cd03206 GST_C_7 GST_C family, unknown subfamily 7; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.98 E-value=1.9e-09 Score=75.33 Aligned_cols=66 Identities=18% Similarity=0.332 Sum_probs=54.3
Q ss_pred cHHHHhhHHHHHHHHhhccCCCCcccCC-ccHHHHHHhhHHHHHHHHhhhcCCCcccCCChhHHHHHHHHhcCcch
Q 026482 142 TAKEAGPAFDFLEKALDKFDDGPFFLGQ-FSLVDIAYIPFVDGYQMILSEGFKYDATIGRPKLAAWIEELNKMDVY 216 (238)
Q Consensus 142 ~~~~~~~~l~~le~~L~~~~~~~~l~G~-~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~ 216 (238)
..+.+.+.++.+|+.|+ +++|++|+ +|+||+++++.+.+... .+.. .+.+|+|.+|++++.++|+|
T Consensus 34 ~~~~~~~~l~~le~~L~---~~~~l~G~~~t~aDi~~~~~~~~~~~-----~~~~-~~~~p~l~~~~~~~~~~p~~ 100 (100)
T cd03206 34 AIARAHRLLRLLEEHLA---GRDWLAGDRPTIADVAVYPYVALAPE-----GGVD-LEDYPAIRRWLARIEALPGF 100 (100)
T ss_pred HHHHHHHHHHHHHHHHc---cCCccCCCCCCHHHHHHHHHHHHHhc-----cCCC-hhhCcHHHHHHHHHHhCcCC
Confidence 46789999999999998 57899999 99999999998865421 1222 35799999999999999975
No 94
>cd03194 GST_C_3 GST_C family, unknown subfamily 3; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.96 E-value=3.6e-09 Score=75.87 Aligned_cols=71 Identities=20% Similarity=0.421 Sum_probs=55.4
Q ss_pred cHHHHhhHHHHHHHHhhccCCCCcccCCccHHHHHHhhHHHHHHHHhhhcCCCcccCCChhHHHHHHHHhcCcchhhcc
Q 026482 142 TAKEAGPAFDFLEKALDKFDDGPFFLGQFSLVDIAYIPFVDGYQMILSEGFKYDATIGRPKLAAWIEELNKMDVYKQTK 220 (238)
Q Consensus 142 ~~~~~~~~l~~le~~L~~~~~~~~l~G~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~ 220 (238)
..+.+.+.++.+|..|+.+++++|++|++|+||+++++.+.++... +.+. .|+|.+|++++.++|+|++.+
T Consensus 42 ~~~~~~~~~~~le~~l~~~~~~~yl~Gd~T~ADi~l~~~~~~~~~~-----~~~~---~P~l~~~~~rv~~rPsv~~~~ 112 (114)
T cd03194 42 VQADIARIEAIWAECLARFQGGPFLFGDFSIADAFFAPVVTRFRTY-----GLPL---SPAAQAYVDALLAHPAMQEWI 112 (114)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHHHc-----CCCC---CHHHHHHHHHHHCCHHHHHHH
Confidence 3456677777888877643367899999999999999998877431 3332 299999999999999999865
No 95
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=98.96 E-value=4.3e-09 Score=69.16 Aligned_cols=58 Identities=24% Similarity=0.355 Sum_probs=47.9
Q ss_pred CCchHHHHHHHHHhcCCCCceeEEeccCCCChhhhhhhcCCCCCCCeEEeCCeEeechHHHHHHHHhc
Q 026482 36 TCPFAQRVWITRNYKGLQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLEHNGKIIGESLDLINYVDSN 103 (238)
Q Consensus 36 ~sp~~~~v~~~L~~~gipy~~~~~~v~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~~~ 103 (238)
.||+|.++.+.|+.+|+|| +++... .+ ..+|.|++|+|+++|..+.+|..|++||.++
T Consensus 15 ~sp~clk~~~~Lr~~~~~~--~v~~~~---n~-----~~sp~gkLP~l~~~~~~i~d~~~Ii~~L~~~ 72 (73)
T cd03078 15 VDPECLAVLAYLKFAGAPL--KVVPSN---NP-----WRSPTGKLPALLTSGTKISGPEKIIEYLRKQ 72 (73)
T ss_pred CCHHHHHHHHHHHcCCCCE--EEEecC---CC-----CCCCCCccCEEEECCEEecChHHHHHHHHHc
Confidence 5899999999999999985 443221 11 2578999999999999999999999999865
No 96
>cd03192 GST_C_Sigma_like GST_C family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi, and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition
Probab=98.93 E-value=5.4e-09 Score=73.49 Aligned_cols=89 Identities=17% Similarity=0.180 Sum_probs=63.9
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhcc------------CCcHHHHhhHHHHHHHHhhccCCCCcccCC-ccHHHHHHhhHHH
Q 026482 116 KRKFAEELFSYSDTFIKDVSTSFK------------GDTAKEAGPAFDFLEKALDKFDDGPFFLGQ-FSLVDIAYIPFVD 182 (238)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~l~~le~~L~~~~~~~~l~G~-~t~aD~~l~~~l~ 182 (238)
++++++++++...++...+...+. ....+.+.+.++.||+.|... +++|++|+ +|+||+++++.+.
T Consensus 2 e~~~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~-~~~~~~G~~~s~aDi~l~~~~~ 80 (104)
T cd03192 2 EAARVDALVDTIADLRAEFAKYFYEKDGEEKKEKKKEFLKEAIPKYLKKLEKILKEN-GGGYLVGDKLTWADLVVFDVLD 80 (104)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHc-CCCeeeCCCccHHHHHHHHHHH
Confidence 356777777776665554433322 123467889999999999721 27899999 9999999999998
Q ss_pred HHHHHhhhcCCCcc-cCCChhHHHHHHHH
Q 026482 183 GYQMILSEGFKYDA-TIGRPKLAAWIEEL 210 (238)
Q Consensus 183 ~~~~~~~~~~~~~~-~~~~p~l~~~~~~~ 210 (238)
++.... ... ...+|+|.+|++++
T Consensus 81 ~~~~~~-----~~~~~~~~p~l~~~~~~~ 104 (104)
T cd03192 81 YLLYLD-----PKLLLKKYPKLKALRERV 104 (104)
T ss_pred HHHhhC-----chhhHHhChhHHHHHHhC
Confidence 885432 222 46789999999875
No 97
>PRK10638 glutaredoxin 3; Provisional
Probab=98.92 E-value=8.9e-09 Score=69.48 Aligned_cols=71 Identities=24% Similarity=0.313 Sum_probs=59.1
Q ss_pred CeEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCC-ChhhhhhhcCCCCCCCeEEeCCeEeechHHHHHHHH
Q 026482 28 TTRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQD-KPAWYKEKVYPSNKVPSLEHNGKIIGESLDLINYVD 101 (238)
Q Consensus 28 ~~~Ly~~~~sp~~~~v~~~L~~~gipy~~~~~~v~~~~-~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~ 101 (238)
++++|+.++||||++++.+|.++|++ |+.++++... ..+++.+ .++..++|+++.||..+.+...+..+-.
T Consensus 3 ~v~ly~~~~Cp~C~~a~~~L~~~gi~--y~~~dv~~~~~~~~~l~~-~~g~~~vP~i~~~g~~igG~~~~~~~~~ 74 (83)
T PRK10638 3 NVEIYTKATCPFCHRAKALLNSKGVS--FQEIPIDGDAAKREEMIK-RSGRTTVPQIFIDAQHIGGCDDLYALDA 74 (83)
T ss_pred cEEEEECCCChhHHHHHHHHHHcCCC--cEEEECCCCHHHHHHHHH-HhCCCCcCEEEECCEEEeCHHHHHHHHH
Confidence 68999999999999999999999997 5667776543 3455665 8899999999999999999988887653
No 98
>cd03202 GST_C_etherase_LigE GST_C family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.88 E-value=4.9e-09 Score=76.32 Aligned_cols=68 Identities=13% Similarity=0.175 Sum_probs=55.8
Q ss_pred cCCcHHHHhhHHHHHHHHhhccCCCCcccCC-ccHHHHHHhhHHHHHHHHhhhcCCCcccCCChhHHHHHHHHhcC
Q 026482 139 KGDTAKEAGPAFDFLEKALDKFDDGPFFLGQ-FSLVDIAYIPFVDGYQMILSEGFKYDATIGRPKLAAWIEELNKM 213 (238)
Q Consensus 139 ~~~~~~~~~~~l~~le~~L~~~~~~~~l~G~-~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~ 213 (238)
.+.....+++.++.+|+.|+ +++|++|+ +|+||+++++.+.+..... +.+..+.+|+|.+|++||.+.
T Consensus 56 ~~~~~~~~~~~l~~l~~~L~---~~~fl~Gd~~t~AD~~l~~~l~~~~~~~----~~~~~~~~p~l~~W~~r~~~~ 124 (124)
T cd03202 56 REAALANFRAALEPLRATLK---GQPFLGGAAPNYADYIVFGGFQWARIVS----PFPLLEEDDPVYDWFERCLDL 124 (124)
T ss_pred hHHHHHHHHHHHHHHHHHHc---CCCccCCCCCchhHHHHHHHHHHHHHcC----cccccccCChHHHHHHHHhcC
Confidence 34556789999999999998 68999999 9999999999998885431 233446899999999999863
No 99
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=98.88 E-value=1.6e-08 Score=66.31 Aligned_cols=71 Identities=23% Similarity=0.355 Sum_probs=57.6
Q ss_pred CeEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCCChhhhhhhcCCCCCCCeEEeCCeEeechHHHHHHHH
Q 026482 28 TTRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLEHNGKIIGESLDLINYVD 101 (238)
Q Consensus 28 ~~~Ly~~~~sp~~~~v~~~L~~~gipy~~~~~~v~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~ 101 (238)
+++||..++||+|.+++-+|...|++ ++.++++.......+.. .....++|.+..||..+.++..|.+||+
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~i~--~~~~~v~~~~~~~~~~~-~~g~~~vP~ifi~g~~igg~~~l~~~l~ 72 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENGIS--YEEIPLGKDITGRSLRA-VTGAMTVPQVFIDGELIGGSDDLEKYFA 72 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCCC--cEEEECCCChhHHHHHH-HhCCCCcCeEEECCEEEeCHHHHHHHhC
Confidence 58999999999999999999999997 56666654332233333 5567889999999999999999999974
No 100
>cd03179 GST_C_1 GST_C family, unknown subfamily 1; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.84 E-value=5.8e-09 Score=73.30 Aligned_cols=61 Identities=21% Similarity=0.434 Sum_probs=50.2
Q ss_pred cHHHHhhHHHHHHHHhhccCCCCcccCC-ccHHHHHHhhHHHHHHHHhhhcCCCcccCCChhHHHHHHHHh
Q 026482 142 TAKEAGPAFDFLEKALDKFDDGPFFLGQ-FSLVDIAYIPFVDGYQMILSEGFKYDATIGRPKLAAWIEELN 211 (238)
Q Consensus 142 ~~~~~~~~l~~le~~L~~~~~~~~l~G~-~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~ 211 (238)
...++.+.++.||+.|+ +++|++|+ +|+||+++++.+.++... +.+ ..++|+|.+|++++.
T Consensus 44 ~~~~~~~~l~~le~~L~---~~~~l~g~~~slaDi~~~~~~~~~~~~-----~~~-~~~~p~l~~~~~~~~ 105 (105)
T cd03179 44 LRERGHAALAVLEAHLA---GRDFLVGDALTIADIALAAYTHVADEG-----GFD-LADYPAIRAWLARIE 105 (105)
T ss_pred HHHHHHHHHHHHHHHHc---cCccccCCCCCHHHHHHHHHHHhcccc-----CCC-hHhCccHHHHHHhhC
Confidence 45678899999999997 67899999 999999999999887432 333 357999999999874
No 101
>KOG3028 consensus Translocase of outer mitochondrial membrane complex, subunit TOM37/Metaxin 1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.78 E-value=2.5e-07 Score=75.49 Aligned_cols=164 Identities=18% Similarity=0.267 Sum_probs=106.0
Q ss_pred CCchHHHHHHHHHhcCCCCceeEEeccCCCChhhhhhhcCCCCCCCeEE-eCCeEeechHHHHHHHHhcCCCCCCCCCC-
Q 026482 36 TCPFAQRVWITRNYKGLQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLE-HNGKIIGESLDLINYVDSNFEGPSLLPDD- 113 (238)
Q Consensus 36 ~sp~~~~v~~~L~~~gipy~~~~~~v~~~~~~~~~~~~~~p~~~vP~L~-~~g~~l~eS~aI~~yL~~~~~~~~l~p~~- 113 (238)
.++-|..+.++++.++-|-++.+. ...| .+|.|++|+|+ ++|..+..-.-|+.+|.....+-.+-.+.
T Consensus 16 id~~sL~~l~y~kl~~~~l~v~~s------sN~~----~s~sg~LP~l~~~ng~~va~~~~iv~~L~k~~~ky~~d~dl~ 85 (313)
T KOG3028|consen 16 IDPDSLAALIYLKLAGAPLKVVVS------SNPW----RSPSGKLPYLITDNGTKVAGPVKIVQFLKKNTKKYNLDADLS 85 (313)
T ss_pred cChhHHHHHHHHHHhCCCceeEee------cCCC----CCCCCCCCeEEecCCceeccHHHHHHHHHHhcccCCcCccHH
Confidence 388899999999999966233332 1223 56889999999 66799999999999998842221122221
Q ss_pred HHHHHHHHHHHHhhhh-hhhh------------------hhh-hc-----------------------cC-------CcH
Q 026482 114 PEKRKFAEELFSYSDT-FIKD------------------VST-SF-----------------------KG-------DTA 143 (238)
Q Consensus 114 ~~~~~~~~~~~~~~~~-~~~~------------------~~~-~~-----------------------~~-------~~~ 143 (238)
..+.+....++.++.. +... ++. .+ .+ +..
T Consensus 86 ~kq~a~~~a~~sll~~~l~~a~~~t~~v~~~Ny~e~Tkk~yak~l~fP~n~~~p~~l~~qAk~rl~l~~g~~~~~e~~i~ 165 (313)
T KOG3028|consen 86 AKQLADTLAFMSLLEENLEPALLYTFWVDTENYNEVTKKWYAKALPFPLNYILPGKLQRQAKERLQLTLGELTEREDQIY 165 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHhHHHHHhcCCCchhhcchhhhHHHHHHHHHHHhCCchhhHHHHH
Confidence 4445555555555552 1111 111 00 00 112
Q ss_pred HHHhhHHHHHHHHhhccCCCCcccCC-ccHHHHHHhhHHHHHHHH-hhhcCCCcccCCChhHHHHHHHHhc
Q 026482 144 KEAGPAFDFLEKALDKFDDGPFFLGQ-FSLVDIAYIPFVDGYQMI-LSEGFKYDATIGRPKLAAWIEELNK 212 (238)
Q Consensus 144 ~~~~~~l~~le~~L~~~~~~~~l~G~-~t~aD~~l~~~l~~~~~~-~~~~~~~~~~~~~p~l~~~~~~~~~ 212 (238)
....+++..|.+.|+ ..+|++|| ||.-|+.++..+..+... ++...-......++||.+|+++++.
T Consensus 166 ~~Aska~~~LS~~Lg---s~kffFgd~psslDa~lfs~la~~~~~~Lp~~~Lq~~l~~~~NL~~~~~~i~s 233 (313)
T KOG3028|consen 166 KDASKALNLLSTLLG---SKKFFFGDKPSSLDALLFSYLAILLQVALPNDSLQVHLLAHKNLVRYVERIRS 233 (313)
T ss_pred HHHHHHHHHHHHHhc---CceEeeCCCCchHHHHHHHHHHHHHhccCCchhHHHHHHhcchHHHHHHHHHH
Confidence 356888999999998 78999999 999999999999874322 1111001111358999999999985
No 102
>PF14834 GST_C_4: Glutathione S-transferase, C-terminal domain; PDB: 3BBY_A.
Probab=98.78 E-value=3.7e-08 Score=68.80 Aligned_cols=98 Identities=15% Similarity=0.214 Sum_probs=69.1
Q ss_pred CHHHHHHHHHHHHhhh-hhhhhhh-------------hhccCCcHHHHhhHHHHHHHHhhccCCCCcccCCccHHHHHHh
Q 026482 113 DPEKRKFAEELFSYSD-TFIKDVS-------------TSFKGDTAKEAGPAFDFLEKALDKFDDGPFFLGQFSLVDIAYI 178 (238)
Q Consensus 113 ~~~~~~~~~~~~~~~~-~~~~~~~-------------~~~~~~~~~~~~~~l~~le~~L~~~~~~~~l~G~~t~aD~~l~ 178 (238)
|..+|++.+++..++. +|+..-- ..+.+.....+.+++...+..|.. +++||+|+.|+||..++
T Consensus 1 D~~~RArAR~vqAwlrSdf~~lR~Erpt~vvf~~~~~~pLs~~a~~~a~kL~~~a~~ll~~--g~~~LFGewsIAD~dlA 78 (117)
T PF14834_consen 1 DRQERARARQVQAWLRSDFMALRQERPTNVVFRGARKPPLSEAAQAAAQKLIAVAERLLAD--GGPNLFGEWSIADADLA 78 (117)
T ss_dssp SHHHHHHHHHHHHHHHHS-HHHHHHS-THHHHS--------HHHHHHHHHHHHHHHHHTTT----SSTTSS--HHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcccHHHHhhCChhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhcc--CCCCccccchHHHHHHH
Confidence 4678999999999998 5543211 112334567788999999999986 88999999999999999
Q ss_pred hHHHHHHHHhhhcCCCcccCCChhHHHHHHHHhcCcchhhcc
Q 026482 179 PFVDGYQMILSEGFKYDATIGRPKLAAWIEELNKMDVYKQTK 220 (238)
Q Consensus 179 ~~l~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~ 220 (238)
.++.++... |..+. +.+..|.++.-+||++++-+
T Consensus 79 ~ml~Rl~~~-----gd~vP---~~l~~Ya~~qwqrpsVQ~Wl 112 (117)
T PF14834_consen 79 LMLNRLVTY-----GDPVP---ERLADYAERQWQRPSVQRWL 112 (117)
T ss_dssp HHHHHHHTT-----T-------HHHHHHHHHHHT-HHHHHHH
T ss_pred HHHHHHHHc-----CCCCC---HHHHHHHHHHHCCHHHHHHH
Confidence 999999543 33332 79999999999999998754
No 103
>cd03193 GST_C_Metaxin GST_C family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities. Other members are the cadmium-inducible
Probab=98.75 E-value=1.4e-08 Score=69.29 Aligned_cols=68 Identities=16% Similarity=0.172 Sum_probs=51.5
Q ss_pred CcHHHHhhHHHHHHHHhhccCCCCcccCC-ccHHHHHHhhHHHHHHHHhhhcCCC-cccCCChhHHHHHHHHh
Q 026482 141 DTAKEAGPAFDFLEKALDKFDDGPFFLGQ-FSLVDIAYIPFVDGYQMILSEGFKY-DATIGRPKLAAWIEELN 211 (238)
Q Consensus 141 ~~~~~~~~~l~~le~~L~~~~~~~~l~G~-~t~aD~~l~~~l~~~~~~~~~~~~~-~~~~~~p~l~~~~~~~~ 211 (238)
...+++.+.++.+|+.|+ +++|++|+ +|+|||++++.+.++.......... ...+.+|+|.+|++|+.
T Consensus 19 ~~~~~~~~~l~~le~~L~---~~~yl~Gd~~t~aDi~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~r~~ 88 (88)
T cd03193 19 EIYSLAKKDLKALSDLLG---DKKFFFGDKPTSLDATVFGHLASILYAPLPNSALQLILKEYPNLVEYCERIR 88 (88)
T ss_pred HHHHHHHHHHHHHHHHhC---CCCccCCCCCCHHHHHHHHHHHHHHhcCCCChHHHHHHHhCcHHHHHHHHhC
Confidence 446788999999999998 67899999 9999999999998875321000000 11357999999999974
No 104
>cd00299 GST_C_family Glutathione S-transferase (GST) family, C-terminal alpha helical domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an activ
Probab=98.68 E-value=4.9e-08 Score=67.48 Aligned_cols=63 Identities=33% Similarity=0.540 Sum_probs=51.2
Q ss_pred cHHHHhhHHHHHHHHhhccCCCCcccCC-ccHHHHHHhhHHHHHHHHhhhcCCCcccCCChhHHHHHHHH
Q 026482 142 TAKEAGPAFDFLEKALDKFDDGPFFLGQ-FSLVDIAYIPFVDGYQMILSEGFKYDATIGRPKLAAWIEEL 210 (238)
Q Consensus 142 ~~~~~~~~l~~le~~L~~~~~~~~l~G~-~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~~~~~~ 210 (238)
..+.+.+.++.||+.|+ +++|++|+ +|+||+++++.+.++...... ..+.+.+|+|.+|++++
T Consensus 37 ~~~~~~~~~~~l~~~L~---~~~~~~g~~~t~aDi~~~~~l~~~~~~~~~---~~~~~~~p~l~~~~~~~ 100 (100)
T cd00299 37 AREELAAALAALEKLLA---GRPYLAGDRFSLADIALAPVLARLDLLGPL---LGLLDEYPRLAAWYDRL 100 (100)
T ss_pred HHHHHHHHHHHHHHHHc---cCCCCCCCCcCHHHHHHHHHHHHHHHhhhh---hhhhccCccHHHHHHhC
Confidence 35678999999999998 67899999 999999999999998764321 11346799999999875
No 105
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=98.68 E-value=1.1e-07 Score=62.37 Aligned_cols=69 Identities=26% Similarity=0.326 Sum_probs=54.7
Q ss_pred CCeEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCC-ChhhhhhhcCCCCCCCeEEeCCeEeechHHHHH
Q 026482 27 GTTRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQD-KPAWYKEKVYPSNKVPSLEHNGKIIGESLDLIN 98 (238)
Q Consensus 27 ~~~~Ly~~~~sp~~~~v~~~L~~~gipy~~~~~~v~~~~-~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~ 98 (238)
++++||+.++||+|++++.+|..+||+ ++.+++.... ..+.+.+ +++..++|++..||..+.....+.+
T Consensus 1 ~~v~ly~~~~C~~C~ka~~~L~~~gi~--~~~~di~~~~~~~~el~~-~~g~~~vP~v~i~~~~iGg~~~~~~ 70 (73)
T cd03027 1 GRVTIYSRLGCEDCTAVRLFLREKGLP--YVEINIDIFPERKAELEE-RTGSSVVPQIFFNEKLVGGLTDLKS 70 (73)
T ss_pred CEEEEEecCCChhHHHHHHHHHHCCCc--eEEEECCCCHHHHHHHHH-HhCCCCcCEEEECCEEEeCHHHHHh
Confidence 468999999999999999999999997 6666665422 2345554 7888999999999998887666554
No 106
>PRK10329 glutaredoxin-like protein; Provisional
Probab=98.64 E-value=1.3e-07 Score=63.39 Aligned_cols=61 Identities=8% Similarity=0.113 Sum_probs=46.4
Q ss_pred CCeEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCCCh-hhhhhhcCCCCCCCeEEeCCeEee
Q 026482 27 GTTRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQDKP-AWYKEKVYPSNKVPSLEHNGKIIG 91 (238)
Q Consensus 27 ~~~~Ly~~~~sp~~~~v~~~L~~~gipy~~~~~~v~~~~~~-~~~~~~~~p~~~vP~L~~~g~~l~ 91 (238)
++++||+.++||+|.+++-+|..+||+ |+.++++..... +++ . .++..++|+++.++..+.
T Consensus 1 ~~v~lYt~~~Cp~C~~ak~~L~~~gI~--~~~idi~~~~~~~~~~-~-~~g~~~vPvv~i~~~~~~ 62 (81)
T PRK10329 1 MRITIYTRNDCVQCHATKRAMESRGFD--FEMINVDRVPEAAETL-R-AQGFRQLPVVIAGDLSWS 62 (81)
T ss_pred CEEEEEeCCCCHhHHHHHHHHHHCCCc--eEEEECCCCHHHHHHH-H-HcCCCCcCEEEECCEEEe
Confidence 368999999999999999999999997 677766543221 223 2 457889999998776553
No 107
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=98.61 E-value=2.8e-07 Score=59.65 Aligned_cols=68 Identities=22% Similarity=0.272 Sum_probs=55.7
Q ss_pred eEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCC-ChhhhhhhcCCCCCCCeEEeCCeEeechHHHHHH
Q 026482 29 TRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQD-KPAWYKEKVYPSNKVPSLEHNGKIIGESLDLINY 99 (238)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~L~~~gipy~~~~~~v~~~~-~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~y 99 (238)
++||+.++||+|++++.+|..+|++ ++.++++... ..+++.. .++..++|++..+|..+.++..|.+.
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~i~--~~~~di~~~~~~~~~l~~-~~~~~~~P~~~~~~~~igg~~~~~~~ 70 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLGIE--FEEIDILEDGELREELKE-LSGWPTVPQIFINGEFIGGYDDLKAL 70 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCc--EEEEECCCCHHHHHHHHH-HhCCCCcCEEEECCEEEecHHHHHHh
Confidence 7899999999999999999999996 6666665432 2355554 78889999999999999999888764
No 108
>cd03211 GST_C_Metaxin2 GST_C family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=98.57 E-value=4.6e-08 Score=71.37 Aligned_cols=68 Identities=13% Similarity=0.171 Sum_probs=51.6
Q ss_pred CcHHHHhhHHHHHHHHhhccCCCCcccCC-ccHHHHHHhhHHHHHHHHhhhcCCC-cccCCChhHHHHHHHHh
Q 026482 141 DTAKEAGPAFDFLEKALDKFDDGPFFLGQ-FSLVDIAYIPFVDGYQMILSEGFKY-DATIGRPKLAAWIEELN 211 (238)
Q Consensus 141 ~~~~~~~~~l~~le~~L~~~~~~~~l~G~-~t~aD~~l~~~l~~~~~~~~~~~~~-~~~~~~p~l~~~~~~~~ 211 (238)
+....+.+.++.|+..|+ +++|++|+ ||.+|+.+++++.++.......... ....++|+|.+|++||.
T Consensus 57 e~~~~~~~~l~aLs~~Lg---~~~~l~Gd~pT~~Da~vf~~la~~~~~~~~~~~l~~~~~~~pnL~~y~~Ri~ 126 (126)
T cd03211 57 QVIEEVDQCCQALSQRLG---TQPYFFGDQPTELDALVFGHLFTILTTQLPNDELAEKVKKYSNLLAFCRRIE 126 (126)
T ss_pred HHHHHHHHHHHHHHHHHC---CCCCCCCCCCcHHHHHHHHHHHHHHhcCCCChHHHHHHHhCcHHHHHHHhcC
Confidence 344677899999999998 78999999 9999999999998875321100011 12468999999999973
No 109
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.54 E-value=4.8e-07 Score=58.94 Aligned_cols=69 Identities=17% Similarity=0.203 Sum_probs=52.5
Q ss_pred eEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCCC-hhhhhhhcCCCCCCCeEEeCCeEe--echHHHHHHH
Q 026482 29 TRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQDK-PAWYKEKVYPSNKVPSLEHNGKII--GESLDLINYV 100 (238)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~L~~~gipy~~~~~~v~~~~~-~~~~~~~~~p~~~vP~L~~~g~~l--~eS~aI~~yL 100 (238)
++||+.++||+|++++.+|...|++ +..++++.... .+++.. .++...+|+++.+|..+ +++.+|.++|
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~~i~--~~~vdi~~~~~~~~~~~~-~~~~~~vP~~~~~~~~~~g~~~~~i~~~i 73 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSKGIA--FEEIDVEKDSAAREEVLK-VLGQRGVPVIVIGHKIIVGFDPEKLDQLL 73 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHCCCe--EEEEeccCCHHHHHHHHH-HhCCCcccEEEECCEEEeeCCHHHHHHHh
Confidence 7899999999999999999999996 66665543221 233443 67889999999888877 6666766665
No 110
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.51 E-value=6.1e-07 Score=59.17 Aligned_cols=70 Identities=14% Similarity=0.240 Sum_probs=51.4
Q ss_pred CeEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCCC-hhhhhhhcC-CCCCCCeEE-eCCeEeec--hHHHHHHH
Q 026482 28 TTRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQDK-PAWYKEKVY-PSNKVPSLE-HNGKIIGE--SLDLINYV 100 (238)
Q Consensus 28 ~~~Ly~~~~sp~~~~v~~~L~~~gipy~~~~~~v~~~~~-~~~~~~~~~-p~~~vP~L~-~~g~~l~e--S~aI~~yL 100 (238)
+++||+.++||+|++++.+|...|++ ++.++++.... .+++.. +| +...+|+++ ++|..+.+ +..|..+|
T Consensus 1 ~v~ly~~~~C~~C~~~~~~L~~~~~~--~~~idi~~~~~~~~~~~~-~~~~~~~vP~i~~~~g~~l~~~~~~~~~~~l 75 (77)
T TIGR02200 1 TITVYGTTWCGYCAQLMRTLDKLGAA--YEWVDIEEDEGAADRVVS-VNNGNMTVPTVKFADGSFLTNPSAAQVKAKL 75 (77)
T ss_pred CEEEEECCCChhHHHHHHHHHHcCCc--eEEEeCcCCHhHHHHHHH-HhCCCceeCEEEECCCeEecCCCHHHHHHHh
Confidence 47899999999999999999999997 56666554322 344444 66 889999997 67777765 34444444
No 111
>cd03197 GST_C_mPGES2 GST_C family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH, or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature, and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated and a C-terminal soluble domain with a GST-like structure. The C-terminus contains two structural domains a N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST active site is located in a cleft between t
Probab=98.47 E-value=4.6e-07 Score=67.22 Aligned_cols=66 Identities=23% Similarity=0.312 Sum_probs=50.6
Q ss_pred CCcHHHHhhHHHHHHHHhhccCCCCcccCC-ccHHHHHHhhHHHHHHHHhhhcCCC-cccCCChhHHHHHHHHhc
Q 026482 140 GDTAKEAGPAFDFLEKALDKFDDGPFFLGQ-FSLVDIAYIPFVDGYQMILSEGFKY-DATIGRPKLAAWIEELNK 212 (238)
Q Consensus 140 ~~~~~~~~~~l~~le~~L~~~~~~~~l~G~-~t~aD~~l~~~l~~~~~~~~~~~~~-~~~~~~p~l~~~~~~~~~ 212 (238)
++.++.+...++.+=+.+.. +++|++|+ ||+||+++++.+..+.... +. ++ .++|+|.+|++||.+
T Consensus 78 ~D~r~~L~~a~~~w~~~~~~--~~~FlaGd~ptIADisvyg~l~s~e~~~----~~~Dl-~~~p~I~~W~eRm~~ 145 (149)
T cd03197 78 DDVREWLYDALNTWVAALGK--DRQFHGGSKPNLADLAVYGVLRSVEGHP----AFKDM-VEETKIGEWYERMDA 145 (149)
T ss_pred chHHHHHHHHHHHHHHHhcC--CCCccCCCCCCHHHHHHHHHHHHHHHhc----cccch-hhCcCHHHHHHHHHH
Confidence 44566777777666666663 67899999 9999999999997775431 33 43 579999999999986
No 112
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.46 E-value=8e-07 Score=57.73 Aligned_cols=61 Identities=15% Similarity=0.226 Sum_probs=48.7
Q ss_pred eEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCC-ChhhhhhhcCCCCCCCeEEeCCeEeec
Q 026482 29 TRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQD-KPAWYKEKVYPSNKVPSLEHNGKIIGE 92 (238)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~L~~~gipy~~~~~~v~~~~-~~~~~~~~~~p~~~vP~L~~~g~~l~e 92 (238)
+++|+.++||+|.+++.+|.+.|++ +..+.++... ..+++.+ .+|.+.+|+|+.+|..+.+
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~~i~--~~~~~i~~~~~~~~~~~~-~~~~~~vP~i~~~~~~i~g 63 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDERGIP--FEEVDVDEDPEALEELKK-LNGYRSVPVVVIGDEHLSG 63 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHCCCC--eEEEeCCCCHHHHHHHHH-HcCCcccCEEEECCEEEec
Confidence 7899999999999999999999996 6666665432 2345554 7899999999988877654
No 113
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=98.43 E-value=1.2e-06 Score=57.62 Aligned_cols=71 Identities=18% Similarity=0.208 Sum_probs=53.7
Q ss_pred CeEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCC-ChhhhhhhcCCCC-CCCeEEeCCeEeechHHHHHHHH
Q 026482 28 TTRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQD-KPAWYKEKVYPSN-KVPSLEHNGKIIGESLDLINYVD 101 (238)
Q Consensus 28 ~~~Ly~~~~sp~~~~v~~~L~~~gipy~~~~~~v~~~~-~~~~~~~~~~p~~-~vP~L~~~g~~l~eS~aI~~yL~ 101 (238)
+++||+.++||+|.+++-+|...|++ ++.++++... .-+++.. ..... .+|++..+|..+.+...+.++-.
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~~~i~--~~~i~i~~~~~~~~~~~~-~~~~~~~vP~v~i~g~~igg~~~~~~~~~ 73 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDKKGVD--YEEIDVDGDPALREEMIN-RSGGRRTVPQIFIGDVHIGGCDDLYALER 73 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCc--EEEEECCCCHHHHHHHHH-HhCCCCccCEEEECCEEEeChHHHHHHHh
Confidence 37899999999999999999999997 6666665431 1122322 33444 89999999999999988887643
No 114
>cd03212 GST_C_Metaxin1_3 GST_C family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins. Mammalian metaxin (or metaxin 1) is a component of the preprotein import complex of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals.
Probab=98.43 E-value=2.5e-07 Score=68.47 Aligned_cols=69 Identities=14% Similarity=0.273 Sum_probs=52.1
Q ss_pred CcHHHHhhHHHHHHHHhhccCCCCcccCC-ccHHHHHHhhHHHHHHHHhhhcCCC-cccCCChhHHHHHHHHhc
Q 026482 141 DTAKEAGPAFDFLEKALDKFDDGPFFLGQ-FSLVDIAYIPFVDGYQMILSEGFKY-DATIGRPKLAAWIEELNK 212 (238)
Q Consensus 141 ~~~~~~~~~l~~le~~L~~~~~~~~l~G~-~t~aD~~l~~~l~~~~~~~~~~~~~-~~~~~~p~l~~~~~~~~~ 212 (238)
+...++.+.++.||+.|+ +++|++|+ +|.+|+.+++++..+.......... ....++|+|.+|++|+.+
T Consensus 64 ~~~~~a~~~l~~l~~~L~---~~~~~~Gd~~t~~D~~~~~~l~~~~~~~~~~~~l~~~~~~~pnL~~~~~ri~~ 134 (137)
T cd03212 64 EIYRDAKECLNLLSQRLG---ESQFFFGDTPTSLDALVFGYLAPLLKAPLPNNKLQNHLKQCPNLCRFCDRILS 134 (137)
T ss_pred HHHHHHHHHHHHHHHHHC---CCCcCCCCCCcHHHHHHHHHHHHHHhccCCChHHHHHHHHCcHHHHHHHHHHH
Confidence 345678889999999998 68999999 9999999999987774321100000 113679999999999985
No 115
>cd03205 GST_C_6 GST_C family, unknown subfamily 6; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.35 E-value=1.1e-06 Score=61.02 Aligned_cols=60 Identities=27% Similarity=0.345 Sum_probs=48.0
Q ss_pred cHHHHhhHHHHHHHHhhccCCCCcccCC-ccHHHHHHhhHHHHHHHHhhhcCCCcccCCChhHHHHHHHH
Q 026482 142 TAKEAGPAFDFLEKALDKFDDGPFFLGQ-FSLVDIAYIPFVDGYQMILSEGFKYDATIGRPKLAAWIEEL 210 (238)
Q Consensus 142 ~~~~~~~~l~~le~~L~~~~~~~~l~G~-~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~~~~~~ 210 (238)
....+.+.++.+|+.|+ +++| + +|+||+++++.+.++..... +..+...+|+|.+|+++|
T Consensus 38 ~~~~~~~~l~~le~~L~---~~~~---d~~TlADi~l~~~l~~~~~~~~---~~~~~~~~p~l~~w~~rm 98 (98)
T cd03205 38 QRGKIERALDALEAELA---KLPL---DPLDLADIAVACALGYLDFRHP---DLDWRAAHPALAAWYARF 98 (98)
T ss_pred HHHHHHHHHHHHHHhhh---hCCC---CCCCHHHHHHHHHHHHHHhHcc---CcchhhhChHHHHHHHhC
Confidence 45788999999999998 5778 7 99999999999998854321 233346799999999985
No 116
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.32 E-value=4.9e-06 Score=56.24 Aligned_cols=76 Identities=18% Similarity=0.252 Sum_probs=58.2
Q ss_pred CCeEEEeeCCCchHHHHHHHHHh-----cCCCCceeEEeccCCC-ChhhhhhhcCC--CCCCCeEEeCCeEeechHHHHH
Q 026482 27 GTTRLYMAYTCPFAQRVWITRNY-----KGLQDEIKLVAFDLQD-KPAWYKEKVYP--SNKVPSLEHNGKIIGESLDLIN 98 (238)
Q Consensus 27 ~~~~Ly~~~~sp~~~~v~~~L~~-----~gipy~~~~~~v~~~~-~~~~~~~~~~p--~~~vP~L~~~g~~l~eS~aI~~ 98 (238)
|.+++|+.++||+|.+++-+|.. .|++ ++.++++... ..+.+.. ... ...+|++..||..+.+...|..
T Consensus 1 m~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~--~~~idi~~~~~~~~el~~-~~~~~~~~vP~ifi~g~~igg~~~~~~ 77 (85)
T PRK11200 1 MFVVIFGRPGCPYCVRAKELAEKLSEERDDFD--YRYVDIHAEGISKADLEK-TVGKPVETVPQIFVDQKHIGGCTDFEA 77 (85)
T ss_pred CEEEEEeCCCChhHHHHHHHHHhhcccccCCc--EEEEECCCChHHHHHHHH-HHCCCCCcCCEEEECCEEEcCHHHHHH
Confidence 46899999999999999999999 7886 6666665421 1223332 222 3579999999999999999999
Q ss_pred HHHhcCC
Q 026482 99 YVDSNFE 105 (238)
Q Consensus 99 yL~~~~~ 105 (238)
++.+.++
T Consensus 78 ~~~~~~~ 84 (85)
T PRK11200 78 YVKENLG 84 (85)
T ss_pred HHHHhcc
Confidence 9987664
No 117
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=6.5e-06 Score=54.98 Aligned_cols=69 Identities=22% Similarity=0.326 Sum_probs=51.0
Q ss_pred CeEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCC--Ch-hhhhhhcCCCCCCCeEEeCCeEeechHHHHHH
Q 026482 28 TTRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQD--KP-AWYKEKVYPSNKVPSLEHNGKIIGESLDLINY 99 (238)
Q Consensus 28 ~~~Ly~~~~sp~~~~v~~~L~~~gipy~~~~~~v~~~~--~~-~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~y 99 (238)
.+++|..++||||.+++-+|..+|++ ++.+.++... .. +.... .++..++|+++.||..+.....+-++
T Consensus 2 ~v~iyt~~~CPyC~~ak~~L~~~g~~--~~~i~~~~~~~~~~~~~~~~-~~g~~tvP~I~i~~~~igg~~d~~~~ 73 (80)
T COG0695 2 NVTIYTKPGCPYCKRAKRLLDRKGVD--YEEIDVDDDEPEEAREMVKR-GKGQRTVPQIFIGGKHVGGCDDLDAL 73 (80)
T ss_pred CEEEEECCCCchHHHHHHHHHHcCCC--cEEEEecCCcHHHHHHHHHH-hCCCCCcCEEEECCEEEeCcccHHHH
Confidence 57899999999999999999999997 5665555543 22 33333 55889999999888777654444433
No 118
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=98.28 E-value=3.1e-06 Score=55.34 Aligned_cols=56 Identities=16% Similarity=0.246 Sum_probs=42.1
Q ss_pred eEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCCC-hhhhhhhcCCCCCCCeEEeCCe
Q 026482 29 TRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQDK-PAWYKEKVYPSNKVPSLEHNGK 88 (238)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~L~~~gipy~~~~~~v~~~~~-~~~~~~~~~p~~~vP~L~~~g~ 88 (238)
++||+.++||+|++++-+|..+|++ ++.++++.... .+++. ..+...+|+++.+|.
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~~i~--~~~~di~~~~~~~~~~~--~~g~~~vP~v~~~g~ 57 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEHGIA--FEEINIDEQPEAIDYVK--AQGFRQVPVIVADGD 57 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHCCCc--eEEEECCCCHHHHHHHH--HcCCcccCEEEECCC
Confidence 5799999999999999999999997 66666654322 23332 346678999997553
No 119
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.25 E-value=9.1e-06 Score=55.08 Aligned_cols=76 Identities=17% Similarity=0.284 Sum_probs=56.7
Q ss_pred eEEEeeCCCchHHHHHHHHHhcCCC---CceeEEeccCCC-ChhhhhhhcCC--CCCCCeEEeCCeEeechHHHHHHHHh
Q 026482 29 TRLYMAYTCPFAQRVWITRNYKGLQ---DEIKLVAFDLQD-KPAWYKEKVYP--SNKVPSLEHNGKIIGESLDLINYVDS 102 (238)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~L~~~gip---y~~~~~~v~~~~-~~~~~~~~~~p--~~~vP~L~~~g~~l~eS~aI~~yL~~ 102 (238)
+++|+.++||||.+++-+|...+++ +.++.++++... ..+.+.. ... ...||++..||..+.++..|..++.+
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~-~~g~~~~tVP~ifi~g~~igG~~dl~~~~~~ 80 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEK-TVGKPVETVPQIFVDEKHVGGCTDFEQLVKE 80 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHH-HhCCCCCCcCeEEECCEEecCHHHHHHHHHh
Confidence 6899999999999999999998653 246666655322 1223333 322 25899999999999999999999988
Q ss_pred cCC
Q 026482 103 NFE 105 (238)
Q Consensus 103 ~~~ 105 (238)
.+.
T Consensus 81 ~~~ 83 (86)
T TIGR02183 81 NFD 83 (86)
T ss_pred ccc
Confidence 764
No 120
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=98.25 E-value=3.4e-06 Score=56.11 Aligned_cols=71 Identities=17% Similarity=0.187 Sum_probs=54.6
Q ss_pred eEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCC-ChhhhhhhcCCCCCCCeEEeCCeEeechHHHHHHHHh
Q 026482 29 TRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQD-KPAWYKEKVYPSNKVPSLEHNGKIIGESLDLINYVDS 102 (238)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~L~~~gipy~~~~~~v~~~~-~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~~ 102 (238)
+++|+.++||+|.+++-+|+..|++ ++.++++... .-+.+.. ......+|++..+|..+.+...+..+..+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~i~--~~~~di~~~~~~~~~~~~-~~g~~~vP~i~i~g~~igg~~~~~~~~~~ 72 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKGVT--FTEIRVDGDPALRDEMMQ-RSGRRTVPQIFIGDVHVGGCDDLYALDRE 72 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcCCC--cEEEEecCCHHHHHHHHH-HhCCCCcCEEEECCEEEcChHHHHHHHHc
Confidence 5799999999999999999999997 6666665321 1223333 55678899999999999888888776544
No 121
>PHA03050 glutaredoxin; Provisional
Probab=98.24 E-value=1.1e-05 Score=57.02 Aligned_cols=73 Identities=16% Similarity=0.371 Sum_probs=56.7
Q ss_pred CCCCeEEEeeCCCchHHHHHHHHHhcCCCC-ceeEEeccCCC-C---hhhhhhhcCCCCCCCeEEeCCeEeechHHHHH
Q 026482 25 FDGTTRLYMAYTCPFAQRVWITRNYKGLQD-EIKLVAFDLQD-K---PAWYKEKVYPSNKVPSLEHNGKIIGESLDLIN 98 (238)
Q Consensus 25 ~~~~~~Ly~~~~sp~~~~v~~~L~~~gipy-~~~~~~v~~~~-~---~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~ 98 (238)
..+++++|..++||||.+++-+|...|+++ +|+.++++... . -+++.+ .+...+||.+..+|..+.....+..
T Consensus 11 ~~~~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~-~tG~~tVP~IfI~g~~iGG~ddl~~ 88 (108)
T PHA03050 11 ANNKVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQ-ITGGRTVPRIFFGKTSIGGYSDLLE 88 (108)
T ss_pred ccCCEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHH-HcCCCCcCEEEECCEEEeChHHHHH
Confidence 456799999999999999999999999932 36777776422 2 234444 6677899999999999988777766
No 122
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=98.23 E-value=1.4e-05 Score=55.60 Aligned_cols=72 Identities=14% Similarity=0.152 Sum_probs=56.3
Q ss_pred CCCCeEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCCC-hh---hhhhhcCCCCCCCeEEeCCeEeechHHHHHH
Q 026482 25 FDGTTRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQDK-PA---WYKEKVYPSNKVPSLEHNGKIIGESLDLINY 99 (238)
Q Consensus 25 ~~~~~~Ly~~~~sp~~~~v~~~L~~~gipy~~~~~~v~~~~~-~~---~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~y 99 (238)
+++.+++|..++||||.+++-+|...|++ ++.++++.... .+ .+.. .+...++|.+..+|..+.+...+...
T Consensus 6 ~~~~Vvvysk~~Cp~C~~ak~~L~~~~i~--~~~vdid~~~~~~~~~~~l~~-~tg~~tvP~Vfi~g~~iGG~ddl~~l 81 (99)
T TIGR02189 6 SEKAVVIFSRSSCCMCHVVKRLLLTLGVN--PAVHEIDKEPAGKDIENALSR-LGCSPAVPAVFVGGKLVGGLENVMAL 81 (99)
T ss_pred ccCCEEEEECCCCHHHHHHHHHHHHcCCC--CEEEEcCCCccHHHHHHHHHH-hcCCCCcCeEEECCEEEcCHHHHHHH
Confidence 56779999999999999999999999997 56676664322 11 2332 56778999999999999888777764
No 123
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.23 E-value=2.4e-06 Score=53.71 Aligned_cols=59 Identities=24% Similarity=0.351 Sum_probs=46.9
Q ss_pred eEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCC-ChhhhhhhcCCCCCCCeEEeCCeEe
Q 026482 29 TRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQD-KPAWYKEKVYPSNKVPSLEHNGKII 90 (238)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~L~~~gipy~~~~~~v~~~~-~~~~~~~~~~p~~~vP~L~~~g~~l 90 (238)
+++|+.++||+|.+++-+|...|++ ++.++++... ..+.+.+ .....++|++..||..|
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~i~--y~~~dv~~~~~~~~~l~~-~~g~~~~P~v~i~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKGIP--YEEVDVDEDEEAREELKE-LSGVRTVPQVFIDGKFI 60 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTBE--EEEEEGGGSHHHHHHHHH-HHSSSSSSEEEETTEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHcCCe--eeEcccccchhHHHHHHH-HcCCCccCEEEECCEEC
Confidence 5799999999999999999999996 7787777642 2344443 55678999999888764
No 124
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.20 E-value=1.6e-05 Score=53.11 Aligned_cols=71 Identities=23% Similarity=0.384 Sum_probs=57.3
Q ss_pred eEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCCCh----hhhhhhcCCCCCCCeEEeCCeEeechHHHHHHHHh
Q 026482 29 TRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQDKP----AWYKEKVYPSNKVPSLEHNGKIIGESLDLINYVDS 102 (238)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~L~~~gipy~~~~~~v~~~~~~----~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~~ 102 (238)
+++|+.++||+|.+++-+|...+++ ++.++++..... ..+.. .+....+|++..+|..+.++..|.++..+
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~~--~~~~~v~~~~~~~~~~~~~~~-~~g~~~~P~v~~~g~~igg~~~~~~~~~~ 76 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGVK--PAVVELDQHEDGSEIQDYLQE-LTGQRTVPNVFIGGKFIGGCDDLMALHKS 76 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCCC--cEEEEEeCCCChHHHHHHHHH-HhCCCCCCeEEECCEEEcCHHHHHHHHHc
Confidence 7899999999999999999999996 666676665442 22333 56677899999999999999999988754
No 125
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.08 E-value=4e-05 Score=51.26 Aligned_cols=73 Identities=21% Similarity=0.370 Sum_probs=56.7
Q ss_pred eEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCCChh----hhhhhcCCCCCCCeEEeCCeEeechHHHHHHHHh
Q 026482 29 TRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQDKPA----WYKEKVYPSNKVPSLEHNGKIIGESLDLINYVDS 102 (238)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~L~~~gipy~~~~~~v~~~~~~~----~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~~ 102 (238)
+++|+.++||+|.+++-+|...+++..++.++++.....+ .+.. ......+|.+..+|..+.++..+.+...+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~-~~g~~~vP~v~i~g~~igg~~~~~~~~~~ 77 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEE-ITGQRTVPNIFINGKFIGGCSDLLALYKS 77 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHH-HhCCCCCCeEEECCEEEcCHHHHHHHHHc
Confidence 4789999999999999999999987336777776643332 2333 45667899999999999999988887643
No 126
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=97.95 E-value=7.9e-05 Score=51.67 Aligned_cols=73 Identities=19% Similarity=0.217 Sum_probs=54.0
Q ss_pred CCCCeEEEee-----CCCchHHHHHHHHHhcCCCCceeEEeccCCCC-hhhhhhhcCCCCCCCeEEeCCeEeechHHHHH
Q 026482 25 FDGTTRLYMA-----YTCPFAQRVWITRNYKGLQDEIKLVAFDLQDK-PAWYKEKVYPSNKVPSLEHNGKIIGESLDLIN 98 (238)
Q Consensus 25 ~~~~~~Ly~~-----~~sp~~~~v~~~L~~~gipy~~~~~~v~~~~~-~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~ 98 (238)
.++++.+|.. ++||||.+++-+|...|++ |+.++++.... -+.+.. .+...++|.+..+|..+.....+..
T Consensus 10 ~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~--~~~~di~~~~~~~~~l~~-~tg~~tvP~vfi~g~~iGG~ddl~~ 86 (97)
T TIGR00365 10 KENPVVLYMKGTPQFPQCGFSARAVQILKACGVP--FAYVNVLEDPEIRQGIKE-YSNWPTIPQLYVKGEFVGGCDIIME 86 (97)
T ss_pred ccCCEEEEEccCCCCCCCchHHHHHHHHHHcCCC--EEEEECCCCHHHHHHHHH-HhCCCCCCEEEECCEEEeChHHHHH
Confidence 4567889965 7899999999999999997 56666542211 123333 5667799999999999888877776
Q ss_pred HH
Q 026482 99 YV 100 (238)
Q Consensus 99 yL 100 (238)
..
T Consensus 87 l~ 88 (97)
T TIGR00365 87 MY 88 (97)
T ss_pred HH
Confidence 43
No 127
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=97.84 E-value=0.00015 Score=49.49 Aligned_cols=73 Identities=19% Similarity=0.219 Sum_probs=54.7
Q ss_pred CCCCeEEEee-----CCCchHHHHHHHHHhcCCCCceeEEeccCCCC-hhhhhhhcCCCCCCCeEEeCCeEeechHHHHH
Q 026482 25 FDGTTRLYMA-----YTCPFAQRVWITRNYKGLQDEIKLVAFDLQDK-PAWYKEKVYPSNKVPSLEHNGKIIGESLDLIN 98 (238)
Q Consensus 25 ~~~~~~Ly~~-----~~sp~~~~v~~~L~~~gipy~~~~~~v~~~~~-~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~ 98 (238)
..+.+.+|.. ++||||.+++-+|...|++ |+.++++.... .+.+.+ .+...++|.+..+|..+.+...+..
T Consensus 6 ~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~--y~~idv~~~~~~~~~l~~-~~g~~tvP~vfi~g~~iGG~~~l~~ 82 (90)
T cd03028 6 KENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVD--FGTFDILEDEEVRQGLKE-YSNWPTFPQLYVNGELVGGCDIVKE 82 (90)
T ss_pred ccCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCC--eEEEEcCCCHHHHHHHHH-HhCCCCCCEEEECCEEEeCHHHHHH
Confidence 4566888865 6999999999999999997 66666643211 123333 5667789999999999988888877
Q ss_pred HH
Q 026482 99 YV 100 (238)
Q Consensus 99 yL 100 (238)
..
T Consensus 83 l~ 84 (90)
T cd03028 83 MH 84 (90)
T ss_pred HH
Confidence 54
No 128
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=97.78 E-value=0.00017 Score=46.99 Aligned_cols=57 Identities=19% Similarity=0.401 Sum_probs=47.1
Q ss_pred CCchHHHHHHHHHhcCCCCc-eeEEeccCCCChhhhhhhcCCCCCCCeEEe-CCeEeechHHHHHHH
Q 026482 36 TCPFAQRVWITRNYKGLQDE-IKLVAFDLQDKPAWYKEKVYPSNKVPSLEH-NGKIIGESLDLINYV 100 (238)
Q Consensus 36 ~sp~~~~v~~~L~~~gipy~-~~~~~v~~~~~~~~~~~~~~p~~~vP~L~~-~g~~l~eS~aI~~yL 100 (238)
.+|-|..+.++|+.++.|.. ++++..+ ++ ..+|.|++|+|.+ ++..+.+-..|++||
T Consensus 13 id~ecLa~~~yl~~~~~~~~~~~vv~s~---n~-----~~Sptg~LP~L~~~~~~~vsg~~~Iv~yL 71 (72)
T PF10568_consen 13 IDPECLAVIAYLKFAGAPEQQFKVVPSN---NP-----WLSPTGELPALIDSGGTWVSGFRNIVEYL 71 (72)
T ss_pred cCHHHHHHHHHHHhCCCCCceEEEEEcC---CC-----CcCCCCCCCEEEECCCcEEECHHHHHHhh
Confidence 58999999999999999843 5555422 12 2689999999998 999999999999998
No 129
>cd03199 GST_C_GRX2 GST_C family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD (most GRXs range from 9-12kD). GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain, but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=97.31 E-value=0.0027 Score=45.99 Aligned_cols=66 Identities=17% Similarity=0.253 Sum_probs=49.6
Q ss_pred CcHHHHhhHHHHHHHHhhccCCCCcccCCccHHHHHHhhHHHHHHHHhhhcCCCcccCCChhHHHHHHHHhcCcch
Q 026482 141 DTAKEAGPAFDFLEKALDKFDDGPFFLGQFSLVDIAYIPFVDGYQMILSEGFKYDATIGRPKLAAWIEELNKMDVY 216 (238)
Q Consensus 141 ~~~~~~~~~l~~le~~L~~~~~~~~l~G~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~ 216 (238)
+...++...|+.++..+. ......|.+|+-|+.+|++|..+-.+ .|..+. ++|..|+++|.+...|
T Consensus 60 ~~i~~l~~~L~~l~~ll~---~~~~~n~~ls~DDi~lFp~LR~Lt~v----kgi~~P---~~V~~Y~~~~s~~t~V 125 (128)
T cd03199 60 QYIAALNALLEELDPLIL---SSEAVNGQLSTDDIILFPILRNLTLV----KGLVFP---PKVKAYLERMSALTKV 125 (128)
T ss_pred HHHHHHHHHHHHHHHHHc---CccccCCcCCHHHHHHHHHHhhhhhh----cCCCCC---HHHHHHHHHHHHHhCC
Confidence 445778889999999995 23344444999999999999877443 244543 8999999999986554
No 130
>PRK10824 glutaredoxin-4; Provisional
Probab=97.17 E-value=0.0031 Score=44.99 Aligned_cols=73 Identities=18% Similarity=0.176 Sum_probs=54.0
Q ss_pred CCCCeEEEee-----CCCchHHHHHHHHHhcCCCCceeEEeccCCC-ChhhhhhhcCCCCCCCeEEeCCeEeechHHHHH
Q 026482 25 FDGTTRLYMA-----YTCPFAQRVWITRNYKGLQDEIKLVAFDLQD-KPAWYKEKVYPSNKVPSLEHNGKIIGESLDLIN 98 (238)
Q Consensus 25 ~~~~~~Ly~~-----~~sp~~~~v~~~L~~~gipy~~~~~~v~~~~-~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~ 98 (238)
.+..+.+|.- ++||||.++.-+|...|++ +..++++... -...+.. .+...++|-+..+|..|.....+..
T Consensus 13 ~~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~--~~~idi~~d~~~~~~l~~-~sg~~TVPQIFI~G~~IGG~ddl~~ 89 (115)
T PRK10824 13 AENPILLYMKGSPKLPSCGFSAQAVQALSACGER--FAYVDILQNPDIRAELPK-YANWPTFPQLWVDGELVGGCDIVIE 89 (115)
T ss_pred hcCCEEEEECCCCCCCCCchHHHHHHHHHHcCCC--ceEEEecCCHHHHHHHHH-HhCCCCCCeEEECCEEEcChHHHHH
Confidence 4556788876 4899999999999999997 4555554321 1234444 6677899999999999988887777
Q ss_pred HH
Q 026482 99 YV 100 (238)
Q Consensus 99 yL 100 (238)
..
T Consensus 90 l~ 91 (115)
T PRK10824 90 MY 91 (115)
T ss_pred HH
Confidence 53
No 131
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=97.10 E-value=0.0025 Score=55.83 Aligned_cols=69 Identities=20% Similarity=0.279 Sum_probs=50.4
Q ss_pred CeEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCCCh-hhhhh-------hcCCCCCCCeEEeCCeEeechHHHHH
Q 026482 28 TTRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQDKP-AWYKE-------KVYPSNKVPSLEHNGKIIGESLDLIN 98 (238)
Q Consensus 28 ~~~Ly~~~~sp~~~~v~~~L~~~gipy~~~~~~v~~~~~~-~~~~~-------~~~p~~~vP~L~~~g~~l~eS~aI~~ 98 (238)
++++|+.++||+|.++.-+|..+||+ ++.++++..... +.... ..+...+||.+..||..+.+-..+..
T Consensus 3 ~V~vys~~~Cp~C~~aK~~L~~~gi~--~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi~~~~igGf~~l~~ 79 (410)
T PRK12759 3 EVRIYTKTNCPFCDLAKSWFGANDIP--FTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFVGDVHIGGYDNLMA 79 (410)
T ss_pred cEEEEeCCCCHHHHHHHHHHHHCCCC--eEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEECCEEEeCchHHHH
Confidence 58999999999999999999999997 667777632211 21111 01356689999988888877766655
No 132
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=97.04 E-value=0.0044 Score=46.25 Aligned_cols=69 Identities=12% Similarity=0.161 Sum_probs=52.0
Q ss_pred CeEEEeeC------CCchHHHHHHHHHhcCCCCceeEEeccCCCC-hhhhhhhcCC----CCCCCeEEeCCeEeechHHH
Q 026482 28 TTRLYMAY------TCPFAQRVWITRNYKGLQDEIKLVAFDLQDK-PAWYKEKVYP----SNKVPSLEHNGKIIGESLDL 96 (238)
Q Consensus 28 ~~~Ly~~~------~sp~~~~v~~~L~~~gipy~~~~~~v~~~~~-~~~~~~~~~p----~~~vP~L~~~g~~l~eS~aI 96 (238)
+++||..+ ++|+|.+++.+|+..+|+ |+.++++.... -+++.+ ... ...+|.+..+|..|.....+
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~--~~e~DVs~~~~~~~EL~~-~~g~~~~~~tvPqVFI~G~~IGG~del 77 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVK--FDERDVSMDSGFREELRE-LLGAELKAVSLPRVFVDGRYLGGAEEV 77 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCc--EEEEECCCCHHHHHHHHH-HhCCCCCCCCCCEEEECCEEEecHHHH
Confidence 47899998 899999999999999997 66677664321 233333 322 36899999999999888887
Q ss_pred HHH
Q 026482 97 INY 99 (238)
Q Consensus 97 ~~y 99 (238)
.+.
T Consensus 78 ~~L 80 (147)
T cd03031 78 LRL 80 (147)
T ss_pred HHH
Confidence 774
No 133
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=97.02 E-value=0.0052 Score=40.96 Aligned_cols=57 Identities=18% Similarity=0.310 Sum_probs=43.7
Q ss_pred CeEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCCChhhhhhhcCCCCCCCeEEeCC
Q 026482 28 TTRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLEHNG 87 (238)
Q Consensus 28 ~~~Ly~~~~sp~~~~v~~~L~~~gipy~~~~~~v~~~~~~~~~~~~~~p~~~vP~L~~~g 87 (238)
+++||+.++|+.|..+.-+|+.......+++..+|+.++++++.. .. ..||+|..+|
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~d~~l~~~-Y~--~~IPVl~~~~ 57 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDIDEDPELFEK-YG--YRIPVLHIDG 57 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETTTTHHHHHH-SC--TSTSEEEETT
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHH-hc--CCCCEEEEcC
Confidence 479999999999999999999776555566777777777777654 54 5799999666
No 134
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=96.98 E-value=0.0025 Score=40.58 Aligned_cols=62 Identities=21% Similarity=0.333 Sum_probs=40.1
Q ss_pred CeEEEeeCCCchHHHHHHHHHhcCCCC-ceeEEeccCCCChhhhhhhcCCCCCCCeEEeCCeEee
Q 026482 28 TTRLYMAYTCPFAQRVWITRNYKGLQD-EIKLVAFDLQDKPAWYKEKVYPSNKVPSLEHNGKIIG 91 (238)
Q Consensus 28 ~~~Ly~~~~sp~~~~v~~~L~~~gipy-~~~~~~v~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~ 91 (238)
.+++|+.++||+|.++.-+|.+....+ .+++..++..+.++.. . ......+|++..+|..++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~~~l~-~-~~~i~~vPti~i~~~~~~ 64 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAEFPDLA-D-EYGVMSVPAIVINGKVEF 64 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcccCHhHH-H-HcCCcccCEEEECCEEEE
Confidence 378999999999999988887652211 2444445544444322 2 234457999998887654
No 135
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.018 Score=40.31 Aligned_cols=74 Identities=23% Similarity=0.372 Sum_probs=57.3
Q ss_pred CCCCeEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCCChh----hhhhhcCCCCCCCeEEeCCeEeechHHHHHHH
Q 026482 25 FDGTTRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQDKPA----WYKEKVYPSNKVPSLEHNGKIIGESLDLINYV 100 (238)
Q Consensus 25 ~~~~~~Ly~~~~sp~~~~v~~~L~~~gipy~~~~~~v~~~~~~~----~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL 100 (238)
..+.+.+|.-.+||||.+++-+|...|++ ..++++|...... ++. ++.-..++|.+..+|..+-....+..+-
T Consensus 12 ~~~~VVifSKs~C~~c~~~k~ll~~~~v~--~~vvELD~~~~g~eiq~~l~-~~tg~~tvP~vFI~Gk~iGG~~dl~~lh 88 (104)
T KOG1752|consen 12 SENPVVIFSKSSCPYCHRAKELLSDLGVN--PKVVELDEDEDGSEIQKALK-KLTGQRTVPNVFIGGKFIGGASDLMALH 88 (104)
T ss_pred hcCCEEEEECCcCchHHHHHHHHHhCCCC--CEEEEccCCCCcHHHHHHHH-HhcCCCCCCEEEECCEEEcCHHHHHHHH
Confidence 45668899999999999999999998986 6777777654332 222 2455569999999999998888888764
Q ss_pred H
Q 026482 101 D 101 (238)
Q Consensus 101 ~ 101 (238)
.
T Consensus 89 ~ 89 (104)
T KOG1752|consen 89 K 89 (104)
T ss_pred H
Confidence 3
No 136
>PF04399 Glutaredoxin2_C: Glutaredoxin 2, C terminal domain; InterPro: IPR007494 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. Unlike other glutaredoxins, glutaredoxin 2 (Grx2) cannot reduce ribonucleotide reductase. Grx2 has significantly higher catalytic activity in the reduction of mixed disulphides with glutathione (GSH) compared with other glutaredoxins. The active site residues (Cys9-Pro10-Tyr11-Cys12, in Escherichia coli Grx2, P39811 from SWISSPROT), which are found at the interface between the N- and C-terminal domains are identical to other glutaredoxins, but there is no other similarity between glutaredoxin 2 and other glutaredoxins. Grx2 is structurally similar to glutathione-S-transferases (GST), but there is no obvious sequence similarity. The inter-domain contacts are mainly hydrophobic, suggesting that the two domains are unlikely to be stable on their own. Both domains are needed for correct folding and activity of Grx2. It is thought that the primary function of Grx2 is to catalyse reversible glutathionylation of proteins with GSH in cellular redox regulation including the response to oxidative stress. The N-terminal domain is IPR004045 from INTERPRO.; PDB: 1G7O_A 3IR4_A.
Probab=96.75 E-value=0.0057 Score=44.68 Aligned_cols=66 Identities=20% Similarity=0.313 Sum_probs=45.2
Q ss_pred CcHHHHhhHHHHHHHHhhccCCCCcccCCccHHHHHHhhHHHHHHHHhhhcCCCcccCCChhHHHHHHHHhcCcch
Q 026482 141 DTAKEAGPAFDFLEKALDKFDDGPFFLGQFSLVDIAYIPFVDGYQMILSEGFKYDATIGRPKLAAWIEELNKMDVY 216 (238)
Q Consensus 141 ~~~~~~~~~l~~le~~L~~~~~~~~l~G~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~ 216 (238)
+...++...|..||..|. ......|.+|+-||.+|++|..+-.+ .|..+. |+|..|+++|.+...+
T Consensus 59 ~~i~~l~~~L~~Le~ll~---~~~~~n~~LS~dDi~lFp~LR~Ltiv----kgi~~P---~~V~~Y~~~~s~~t~V 124 (132)
T PF04399_consen 59 ELIAELNADLEELEPLLA---SPNAVNGELSIDDIILFPILRSLTIV----KGIQWP---PKVRAYMDRMSKATGV 124 (132)
T ss_dssp HHHHHHHHHHHHHHHH-S---CTTBTTSS--HHHHHHHHHHHHHCTC----TTS------HHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHhc---cccccCCCCCHHHHHHHHHHhhhhhc----cCCcCC---HHHHHHHHHHHHHcCC
Confidence 345778889999999997 34455555999999999999877332 344543 8999999999986554
No 137
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.56 E-value=0.0012 Score=58.10 Aligned_cols=106 Identities=19% Similarity=0.296 Sum_probs=74.6
Q ss_pred eCCeEeechHHHHHHHHhcC-CCCCCCCCCHHHHHHHHHHHHhhhhhhhhhhhhccCCcHHHHhhHHHHHHHHhhccCCC
Q 026482 85 HNGKIIGESLDLINYVDSNF-EGPSLLPDDPEKRKFAEELFSYSDTFIKDVSTSFKGDTAKEAGPAFDFLEKALDKFDDG 163 (238)
Q Consensus 85 ~~g~~l~eS~aI~~yL~~~~-~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~ 163 (238)
.+|..+.++..+..|..... ..+.++|.+ .++..++.|+.+... .....+...+..++..|. -.
T Consensus 43 ~d~~~l~~a~~~~~~~~~~~~~~~~lf~~~-~d~~~vd~w~~~s~~-----------~~~~~~s~~~~~ld~~l~---~~ 107 (712)
T KOG1147|consen 43 LDGRKLNGATEPVVYSAALAKADPKLFGNN-IDRSQVDHWVSFSST-----------FSFDEISSSLSELDKFLV---LR 107 (712)
T ss_pred cccccccCCccchhhhhhhcccCHhHcCCc-ccHHHHHHHHHHhhh-----------cchHHHHHHHHHHHhhhh---HH
Confidence 45666777777777765433 234588877 788999999998764 123567788888999998 68
Q ss_pred CcccCC-ccHHHHHHhhHHHHHHHHhhhcCCCcccCCChhHHHHHH
Q 026482 164 PFFLGQ-FSLVDIAYIPFVDGYQMILSEGFKYDATIGRPKLAAWIE 208 (238)
Q Consensus 164 ~~l~G~-~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~~~~ 208 (238)
.||+|+ +|+||+++|++|..=.+.... ......+-+|.+|++
T Consensus 108 t~lvg~sls~Ad~aiw~~l~~n~~~~~~---lk~~k~~~~v~Rw~~ 150 (712)
T KOG1147|consen 108 TFLVGNSLSIADFAIWGALHSNGMRQEQ---LKAKKDYQNVERWYD 150 (712)
T ss_pred HHhhccchhHHHHHHHHHHhcccchHHH---HHhhCCchhhhhhcC
Confidence 899999 999999999999753222111 111234567888887
No 138
>PTZ00062 glutaredoxin; Provisional
Probab=96.51 E-value=0.016 Score=45.69 Aligned_cols=72 Identities=19% Similarity=0.153 Sum_probs=52.9
Q ss_pred CCCCeEEEee-----CCCchHHHHHHHHHhcCCCCceeEEeccCCCC-hhhhhhhcCCCCCCCeEEeCCeEeechHHHHH
Q 026482 25 FDGTTRLYMA-----YTCPFAQRVWITRNYKGLQDEIKLVAFDLQDK-PAWYKEKVYPSNKVPSLEHNGKIIGESLDLIN 98 (238)
Q Consensus 25 ~~~~~~Ly~~-----~~sp~~~~v~~~L~~~gipy~~~~~~v~~~~~-~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~ 98 (238)
+...+.||.- +.||||.++.-+|...|++ |+.++++.... .+.+.. .+...++|.+..+|+.+.+...+.+
T Consensus 111 ~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~--y~~~DI~~d~~~~~~l~~-~sg~~TvPqVfI~G~~IGG~d~l~~ 187 (204)
T PTZ00062 111 RNHKILLFMKGSKTFPFCRFSNAVVNMLNSSGVK--YETYNIFEDPDLREELKV-YSNWPTYPQLYVNGELIGGHDIIKE 187 (204)
T ss_pred hcCCEEEEEccCCCCCCChhHHHHHHHHHHcCCC--EEEEEcCCCHHHHHHHHH-HhCCCCCCeEEECCEEEcChHHHHH
Confidence 3456888865 5899999999999999997 56666653211 133443 5666789999999999888777776
Q ss_pred H
Q 026482 99 Y 99 (238)
Q Consensus 99 y 99 (238)
.
T Consensus 188 l 188 (204)
T PTZ00062 188 L 188 (204)
T ss_pred H
Confidence 3
No 139
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=96.43 E-value=0.0035 Score=44.51 Aligned_cols=32 Identities=9% Similarity=0.166 Sum_probs=27.8
Q ss_pred eEEEeeCCCchHHHHHHHHHhcCCCCceeEEecc
Q 026482 29 TRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFD 62 (238)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~L~~~gipy~~~~~~v~ 62 (238)
++||+.+.||+|++++-.|..+|++ |+.+++.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~--~~~idi~ 32 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEHGVD--YTAIDIV 32 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCc--eEEeccc
Confidence 5799999999999999999999997 5666554
No 140
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=96.22 E-value=0.0074 Score=42.29 Aligned_cols=32 Identities=9% Similarity=0.289 Sum_probs=27.8
Q ss_pred eEEEeeCCCchHHHHHHHHHhcCCCCceeEEecc
Q 026482 29 TRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFD 62 (238)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~L~~~gipy~~~~~~v~ 62 (238)
+++|+.+.||+|++++-+|..+|++ |+.+++.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~--~~~idi~ 32 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEHGIE--YEFIDYL 32 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCC--cEEEeec
Confidence 5799999999999999999999997 5666553
No 141
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.02 E-value=0.017 Score=37.25 Aligned_cols=65 Identities=15% Similarity=0.213 Sum_probs=43.0
Q ss_pred CCeEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCC---------CChhhhhh-hcCCCCCCCeEE-eCCeEee
Q 026482 27 GTTRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQ---------DKPAWYKE-KVYPSNKVPSLE-HNGKIIG 91 (238)
Q Consensus 27 ~~~~Ly~~~~sp~~~~v~~~L~~~gipy~~~~~~v~~~---------~~~~~~~~-~~~p~~~vP~L~-~~g~~l~ 91 (238)
++++||+...||-|....-.|+-.++.|++..+.-.+. ++.+++-+ +.|..-.+|+|. +||.++.
T Consensus 2 skp~lfgsn~Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~d~~vVl 77 (85)
T COG4545 2 SKPKLFGSNLCPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTDDGKVVL 77 (85)
T ss_pred CCceeeccccCcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeCCCcEEE
Confidence 34689999999999999999999999654443332221 22222221 345566799998 7777665
No 142
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=95.94 E-value=0.0093 Score=43.66 Aligned_cols=31 Identities=6% Similarity=0.109 Sum_probs=27.5
Q ss_pred eEEEeeCCCchHHHHHHHHHhcCCCCceeEEec
Q 026482 29 TRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAF 61 (238)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~L~~~gipy~~~~~~v 61 (238)
+++|+.+.||+|++++-+|..+||+ |+.+++
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~gi~--~~~idi 32 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEHDIP--FTERNI 32 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCC--cEEeec
Confidence 7899999999999999999999997 555554
No 143
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=95.57 E-value=0.021 Score=40.84 Aligned_cols=32 Identities=9% Similarity=0.298 Sum_probs=27.8
Q ss_pred eEEEeeCCCchHHHHHHHHHhcCCCCceeEEecc
Q 026482 29 TRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFD 62 (238)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~L~~~gipy~~~~~~v~ 62 (238)
+++|+.+.||+|++++-+|..+|++ ++.+++.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~--~~~idi~ 32 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEANGIE--YQFIDIG 32 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCc--eEEEecC
Confidence 5799999999999999999999996 6666653
No 144
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=95.54 E-value=0.025 Score=40.35 Aligned_cols=32 Identities=9% Similarity=0.113 Sum_probs=28.3
Q ss_pred eEEEeeCCCchHHHHHHHHHhcCCCCceeEEecc
Q 026482 29 TRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFD 62 (238)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~L~~~gipy~~~~~~v~ 62 (238)
+++|+.+.|++|++++-.|..+|++ ++++++.
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~gi~--~~~idi~ 33 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEHQIP--FEERNLF 33 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCc--eEEEecC
Confidence 7899999999999999999999996 6666653
No 145
>PRK12559 transcriptional regulator Spx; Provisional
Probab=95.34 E-value=0.028 Score=41.11 Aligned_cols=32 Identities=9% Similarity=0.078 Sum_probs=27.8
Q ss_pred eEEEeeCCCchHHHHHHHHHhcCCCCceeEEecc
Q 026482 29 TRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFD 62 (238)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~L~~~gipy~~~~~~v~ 62 (238)
+++|+.+.|+.|++++-.|..+|++ |+.+++.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~gi~--~~~~di~ 33 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEENQID--YTEKNIV 33 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCC--eEEEEee
Confidence 7899999999999999999999997 5555543
No 146
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=95.11 E-value=0.033 Score=39.08 Aligned_cols=32 Identities=13% Similarity=0.233 Sum_probs=27.5
Q ss_pred eEEEeeCCCchHHHHHHHHHhcCCCCceeEEecc
Q 026482 29 TRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFD 62 (238)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~L~~~gipy~~~~~~v~ 62 (238)
+++|+.+.|+-|++++-.|.++|++ ++++++.
T Consensus 1 i~iy~~~~C~~crka~~~L~~~~i~--~~~~di~ 32 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEARGVA--YTFHDYR 32 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCC--eEEEecc
Confidence 5799999999999999999999997 5565543
No 147
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=94.93 E-value=0.036 Score=40.62 Aligned_cols=32 Identities=16% Similarity=0.211 Sum_probs=28.2
Q ss_pred eEEEeeCCCchHHHHHHHHHhcCCCCceeEEecc
Q 026482 29 TRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFD 62 (238)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~L~~~gipy~~~~~~v~ 62 (238)
+++|+.+.|+.|++++-.|..+|++ |+++++.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~~i~--~~~~d~~ 33 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAHQLS--YKEQNLG 33 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCC--eEEEECC
Confidence 7899999999999999999999997 6666554
No 148
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=94.83 E-value=0.071 Score=34.98 Aligned_cols=57 Identities=19% Similarity=0.328 Sum_probs=39.2
Q ss_pred CeEEEeeCCCchHHHHHHHHHh----cCCCCceeEEeccCCCChhhhhhhcCCCCCCCeEEeCCe
Q 026482 28 TTRLYMAYTCPFAQRVWITRNY----KGLQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLEHNGK 88 (238)
Q Consensus 28 ~~~Ly~~~~sp~~~~v~~~L~~----~gipy~~~~~~v~~~~~~~~~~~~~~p~~~vP~L~~~g~ 88 (238)
.++||+.++||+|..+.-.|+. .+. ++.+..+|....++... ......+|++..+|.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~--~~~~~~vd~~~~~~~~~--~~~v~~vPt~~~~g~ 62 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGD--AVEVEYINVMENPQKAM--EYGIMAVPAIVINGD 62 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcC--ceEEEEEeCccCHHHHH--HcCCccCCEEEECCE
Confidence 3789999999999987777653 343 36666777655554432 234567999997665
No 149
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=94.76 E-value=0.046 Score=38.91 Aligned_cols=31 Identities=13% Similarity=0.156 Sum_probs=27.3
Q ss_pred eEEEeeCCCchHHHHHHHHHhcCCCCceeEEec
Q 026482 29 TRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAF 61 (238)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~L~~~gipy~~~~~~v 61 (238)
++||+.+.|+-|++++-.|+++|++ |+++++
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~gi~--~~~~d~ 32 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAAGHE--VEVRDL 32 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCC--cEEeeh
Confidence 7899999999999999999999997 555554
No 150
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=94.65 E-value=0.24 Score=32.32 Aligned_cols=56 Identities=11% Similarity=0.084 Sum_probs=38.0
Q ss_pred CeEEEeeCCCchHHHH----HHHHHhcCCCCceeEEeccCCCChhhhhhhcCCCCCCCeEEeCCeEee
Q 026482 28 TTRLYMAYTCPFAQRV----WITRNYKGLQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLEHNGKIIG 91 (238)
Q Consensus 28 ~~~Ly~~~~sp~~~~v----~~~L~~~gipy~~~~~~v~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~ 91 (238)
++.+|. ++||.|..+ .-++.+.|+. ++++.++- .+... ..-...+|+++.||..+.
T Consensus 2 ~i~~~a-~~C~~C~~~~~~~~~~~~e~~~~--~~~~~v~~---~~~a~--~~~v~~vPti~i~G~~~~ 61 (76)
T TIGR00412 2 KIQIYG-TGCANCQMTEKNVKKAVEELGID--AEFEKVTD---MNEIL--EAGVTATPGVAVDGELVI 61 (76)
T ss_pred EEEEEC-CCCcCHHHHHHHHHHHHHHcCCC--eEEEEeCC---HHHHH--HcCCCcCCEEEECCEEEE
Confidence 467776 999999987 5577777875 67777662 22222 224677999998776553
No 151
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=94.31 E-value=0.091 Score=37.61 Aligned_cols=32 Identities=9% Similarity=0.116 Sum_probs=27.5
Q ss_pred CeEEEeeCCCchHHHHHHHHHhcCCCCceeEE
Q 026482 28 TTRLYMAYTCPFAQRVWITRNYKGLQDEIKLV 59 (238)
Q Consensus 28 ~~~Ly~~~~sp~~~~v~~~L~~~gipy~~~~~ 59 (238)
.+++|+.+.|.=|++++-.|+.+||+|++..+
T Consensus 2 ~itiy~~p~C~t~rka~~~L~~~gi~~~~~~y 33 (117)
T COG1393 2 MITIYGNPNCSTCRKALAWLEEHGIEYTFIDY 33 (117)
T ss_pred eEEEEeCCCChHHHHHHHHHHHcCCCcEEEEe
Confidence 58999999999999999999999997544433
No 152
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=93.51 E-value=0.18 Score=34.15 Aligned_cols=62 Identities=18% Similarity=0.174 Sum_probs=39.3
Q ss_pred CeEEEeeCCCchHHHHHHHHHhcCCCC-ceeEEeccCCCChhhhhhhcCCCCCCCeEEeCCeEee
Q 026482 28 TTRLYMAYTCPFAQRVWITRNYKGLQD-EIKLVAFDLQDKPAWYKEKVYPSNKVPSLEHNGKIIG 91 (238)
Q Consensus 28 ~~~Ly~~~~sp~~~~v~~~L~~~gipy-~~~~~~v~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~ 91 (238)
.+++|..++||+|..+.-++...---+ .+++..++....++... -..--.+|+++-||..+.
T Consensus 15 ~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~e~a~--~~~V~~vPt~vidG~~~~ 77 (89)
T cd03026 15 NFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGALFQDEVE--ERGIMSVPAIFLNGELFG 77 (89)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhCHHHHH--HcCCccCCEEEECCEEEE
Confidence 588999999999988777666442111 24444455444444432 234567999997776554
No 153
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=93.18 E-value=0.31 Score=34.21 Aligned_cols=70 Identities=13% Similarity=0.227 Sum_probs=43.6
Q ss_pred CCchHHHHHHHHHhc-CCCCceeEEeccCCCChhhhhhhcC-CCCCCCeEE-eCCe-------------EeechHHHHHH
Q 026482 36 TCPFAQRVWITRNYK-GLQDEIKLVAFDLQDKPAWYKEKVY-PSNKVPSLE-HNGK-------------IIGESLDLINY 99 (238)
Q Consensus 36 ~sp~~~~v~~~L~~~-gipy~~~~~~v~~~~~~~~~~~~~~-p~~~vP~L~-~~g~-------------~l~eS~aI~~y 99 (238)
+||.|..+.-+|... .+.-..+++.|+...-.....+-+. ....+|+|| .+|. .|+++..|++|
T Consensus 23 ~Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~RPR~~vi~llGE~~QslPvLVL~~~~~~~~~~~~~~~~rfi~d~~~I~~~ 102 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFPDLRERLDVRRVDFPRPRQAVIALLGEANQSLPVLVLADGAPSPDDAGSHGGRRFIDDPRRILRY 102 (112)
T ss_pred ECCchHHHHhHHhhChhhhhcccEEEeCCCCchHHHHHHhChhccCCCEEEeCCCCCCcccccccCCeEEeCCHHHHHHH
Confidence 477787777777643 2222355666666433222211011 235699998 4433 79999999999
Q ss_pred HHhcCC
Q 026482 100 VDSNFE 105 (238)
Q Consensus 100 L~~~~~ 105 (238)
|.++|+
T Consensus 103 La~r~g 108 (112)
T PF11287_consen 103 LAERHG 108 (112)
T ss_pred HHHHcC
Confidence 999986
No 154
>PRK10026 arsenate reductase; Provisional
Probab=92.92 E-value=0.2 Score=37.06 Aligned_cols=33 Identities=9% Similarity=0.249 Sum_probs=28.1
Q ss_pred CCeEEEeeCCCchHHHHHHHHHhcCCCCceeEEec
Q 026482 27 GTTRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAF 61 (238)
Q Consensus 27 ~~~~Ly~~~~sp~~~~v~~~L~~~gipy~~~~~~v 61 (238)
..+++|+.+.|.=|++++-.|.++|++ ++++++
T Consensus 2 ~~i~iY~~p~Cst~RKA~~wL~~~gi~--~~~~d~ 34 (141)
T PRK10026 2 SNITIYHNPACGTSRNTLEMIRNSGTE--PTIIHY 34 (141)
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHCCCC--cEEEee
Confidence 358999999999999999999999997 455443
No 155
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=92.89 E-value=0.18 Score=36.54 Aligned_cols=32 Identities=16% Similarity=0.187 Sum_probs=27.7
Q ss_pred CeEEEeeCCCchHHHHHHHHHhcCCCCceeEEec
Q 026482 28 TTRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAF 61 (238)
Q Consensus 28 ~~~Ly~~~~sp~~~~v~~~L~~~gipy~~~~~~v 61 (238)
++++|+.+.|.=|++++-.|+++|++ ++++++
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~~gi~--~~~~d~ 33 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKASGHD--VEVQDI 33 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHCCCC--cEEEec
Confidence 58999999999999999999999997 555543
No 156
>PHA02125 thioredoxin-like protein
Probab=92.74 E-value=0.4 Score=31.14 Aligned_cols=50 Identities=16% Similarity=0.105 Sum_probs=35.4
Q ss_pred eEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCCChhhhhhhcCCCCCCCeEE
Q 026482 29 TRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLE 84 (238)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~L~~~gipy~~~~~~v~~~~~~~~~~~~~~p~~~vP~L~ 84 (238)
+.+|+.++|+.|+.+.-.|+. +. ++.+.++....++.. . ......+|+++
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~--~~--~~~~~vd~~~~~~l~-~-~~~v~~~PT~~ 51 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLAN--VE--YTYVDVDTDEGVELT-A-KHHIRSLPTLV 51 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHH--Hh--heEEeeeCCCCHHHH-H-HcCCceeCeEE
Confidence 678999999999998887753 53 556677765554433 2 34466899998
No 157
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=92.36 E-value=0.45 Score=28.33 Aligned_cols=55 Identities=22% Similarity=0.181 Sum_probs=33.5
Q ss_pred eEEEeeCCCchHHHHHHHHHh---cCCCCceeEEeccCCCChhhhhhhcCCCCCCCeEE
Q 026482 29 TRLYMAYTCPFAQRVWITRNY---KGLQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLE 84 (238)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~L~~---~gipy~~~~~~v~~~~~~~~~~~~~~p~~~vP~L~ 84 (238)
+.+|+..+|++|++++..+.. .+-.+.+..+.++.......... ..+...+|+++
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~P~~~ 58 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKELK-RYGVGGVPTLV 58 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhHHH-hCCCccccEEE
Confidence 357888999999999998883 23221344444433222221112 46778999998
No 158
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.97 E-value=0.99 Score=31.07 Aligned_cols=71 Identities=20% Similarity=0.242 Sum_probs=49.2
Q ss_pred CCCeEEEe-----eCCCchHHHHHHHHHhcCCCCceeEEeccCCCCh---hhhhhhcCCCCCCCeEEeCCeEeechHHHH
Q 026482 26 DGTTRLYM-----AYTCPFAQRVWITRNYKGLQDEIKLVAFDLQDKP---AWYKEKVYPSNKVPSLEHNGKIIGESLDLI 97 (238)
Q Consensus 26 ~~~~~Ly~-----~~~sp~~~~v~~~L~~~gipy~~~~~~v~~~~~~---~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~ 97 (238)
++.+.||- +|-|+||.++--+|.++|+ .++..++| -.++ +.+++ .+-..++|=|-.+|..+..|..|.
T Consensus 14 ~n~VvLFMKGtp~~P~CGFS~~~vqiL~~~g~-v~~~~vnV--L~d~eiR~~lk~-~s~WPT~PQLyi~GEfvGG~DIv~ 89 (105)
T COG0278 14 ENPVVLFMKGTPEFPQCGFSAQAVQILSACGV-VDFAYVDV--LQDPEIRQGLKE-YSNWPTFPQLYVNGEFVGGCDIVR 89 (105)
T ss_pred cCceEEEecCCCCCCCCCccHHHHHHHHHcCC-cceeEEee--ccCHHHHhccHh-hcCCCCCceeeECCEEeccHHHHH
Confidence 34455663 3679999999999999995 13555444 3333 23333 566677888889999999998887
Q ss_pred HHH
Q 026482 98 NYV 100 (238)
Q Consensus 98 ~yL 100 (238)
+..
T Consensus 90 Em~ 92 (105)
T COG0278 90 EMY 92 (105)
T ss_pred HHH
Confidence 754
No 159
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=91.56 E-value=1.6 Score=29.72 Aligned_cols=67 Identities=15% Similarity=0.251 Sum_probs=46.5
Q ss_pred eEEEeeCCCc------hHHHHHHHHHhcCCCCceeEEeccCCC-ChhhhhhhcC----CCCCCCeEEeCCeEeechHHHH
Q 026482 29 TRLYMAYTCP------FAQRVWITRNYKGLQDEIKLVAFDLQD-KPAWYKEKVY----PSNKVPSLEHNGKIIGESLDLI 97 (238)
Q Consensus 29 ~~Ly~~~~sp------~~~~v~~~L~~~gipy~~~~~~v~~~~-~~~~~~~~~~----p~~~vP~L~~~g~~l~eS~aI~ 97 (238)
++||....++ .|++++.+|.-+||+ |+.++++... ..+++.+ .. +...+|-+..+|..+.+...+.
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~--f~eiDI~~d~~~r~em~~-~~~~~~g~~tvPQIFi~~~~iGg~ddl~ 78 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIE--FEEVDISMNEENRQWMRE-NVPNENGKPLPPQIFNGDEYCGDYEAFF 78 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHCCCc--eEEEecCCCHHHHHHHHH-hcCCCCCCCCCCEEEECCEEeeCHHHHH
Confidence 6788876544 356789999999996 7777776522 2234433 22 3468898888999888876665
Q ss_pred H
Q 026482 98 N 98 (238)
Q Consensus 98 ~ 98 (238)
.
T Consensus 79 ~ 79 (92)
T cd03030 79 E 79 (92)
T ss_pred H
Confidence 5
No 160
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=91.54 E-value=0.3 Score=34.57 Aligned_cols=31 Identities=13% Similarity=0.327 Sum_probs=26.9
Q ss_pred eEEEeeCCCchHHHHHHHHHhcCCCCceeEEec
Q 026482 29 TRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAF 61 (238)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~L~~~gipy~~~~~~v 61 (238)
+++|+.+.|.=|++++-.|+.+|++ ++++++
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~--~~~~di 31 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEAGIE--PEIVEY 31 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCC--eEEEec
Confidence 5799999999999999999999997 555544
No 161
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=91.46 E-value=0.31 Score=34.65 Aligned_cols=31 Identities=16% Similarity=0.355 Sum_probs=26.9
Q ss_pred eEEEeeCCCchHHHHHHHHHhcCCCCceeEEec
Q 026482 29 TRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAF 61 (238)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~L~~~gipy~~~~~~v 61 (238)
+++|+.+.|+=|++++-.|..+|++ ++++++
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~--~~~~di 31 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLEDKGIE--PEVVKY 31 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCC--eEEEec
Confidence 5799999999999999999999996 556554
No 162
>PRK10853 putative reductase; Provisional
Probab=91.21 E-value=0.32 Score=34.89 Aligned_cols=31 Identities=13% Similarity=0.275 Sum_probs=27.2
Q ss_pred eEEEeeCCCchHHHHHHHHHhcCCCCceeEEec
Q 026482 29 TRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAF 61 (238)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~L~~~gipy~~~~~~v 61 (238)
+++|+.+.|.=|++++-.|+++|++ ++++++
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~~i~--~~~~d~ 32 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQGID--YRFHDY 32 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHcCCC--cEEeeh
Confidence 7899999999999999999999997 555543
No 163
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=90.12 E-value=0.79 Score=29.83 Aligned_cols=58 Identities=19% Similarity=0.379 Sum_probs=36.2
Q ss_pred CeEEEeeCCCchHHHHHH----HHHhcCCCCceeEEeccCCCChhhhhhhcCCCCCCCeEEeCCeEeech
Q 026482 28 TTRLYMAYTCPFAQRVWI----TRNYKGLQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLEHNGKIIGES 93 (238)
Q Consensus 28 ~~~Ly~~~~sp~~~~v~~----~L~~~gipy~~~~~~v~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS 93 (238)
++++ ..++||+|..+.- ++...|+ +++++++ . ..+... -.....+|+|+-||...+..
T Consensus 2 ~I~v-~~~~C~~C~~~~~~~~~~~~~~~i--~~ei~~~--~-~~~~~~--~ygv~~vPalvIng~~~~~G 63 (76)
T PF13192_consen 2 KIKV-FSPGCPYCPELVQLLKEAAEELGI--EVEIIDI--E-DFEEIE--KYGVMSVPALVINGKVVFVG 63 (76)
T ss_dssp EEEE-ECSSCTTHHHHHHHHHHHHHHTTE--EEEEEET--T-THHHHH--HTT-SSSSEEEETTEEEEES
T ss_pred EEEE-eCCCCCCcHHHHHHHHHHHHhcCC--eEEEEEc--c-CHHHHH--HcCCCCCCEEEECCEEEEEe
Confidence 4677 5677999986555 4445565 4666654 2 333332 34567899999888765543
No 164
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=87.29 E-value=3.3 Score=28.61 Aligned_cols=71 Identities=15% Similarity=0.266 Sum_probs=40.3
Q ss_pred CCeEEEeeCCCch------HHHHHHHHHhcCCCCceeEEeccCCCC-hhhhhhhc--------CCCCCCCeEEeCCeEee
Q 026482 27 GTTRLYMAYTCPF------AQRVWITRNYKGLQDEIKLVAFDLQDK-PAWYKEKV--------YPSNKVPSLEHNGKIIG 91 (238)
Q Consensus 27 ~~~~Ly~~~~sp~------~~~v~~~L~~~gipy~~~~~~v~~~~~-~~~~~~~~--------~p~~~vP~L~~~g~~l~ 91 (238)
|.+++|....++. .+++..+|+.++|+ |+.+++..... ..+..+.. ++....|-+..|+..+.
T Consensus 1 m~I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~--fe~vDIa~~e~~r~~mr~~~g~~~~~~~~~~~lpPqiF~~~~Y~G 78 (99)
T PF04908_consen 1 MVIKVYISSISGSREIKKRQQRVLMILEAKKIP--FEEVDIAMDEEARQWMRENAGPEEKDPGNGKPLPPQIFNGDEYCG 78 (99)
T ss_dssp -SEEEEE-SS-SSHHHHHHHHHHHHHHHHTT----EEEEETTT-HHHHHHHHHHT--CCCS-TSTT--S-EEEETTEEEE
T ss_pred CEEEEEEecccCCHHHHHHHHHHHHHHHHcCCC--cEEEeCcCCHHHHHHHHHhccccccCCCCCCCCCCEEEeCCEEEe
Confidence 4588998876553 36899999999996 77877765221 23333212 22234467888888877
Q ss_pred chHHHHHH
Q 026482 92 ESLDLINY 99 (238)
Q Consensus 92 eS~aI~~y 99 (238)
+-..+.+.
T Consensus 79 dye~f~ea 86 (99)
T PF04908_consen 79 DYEDFEEA 86 (99)
T ss_dssp EHHHHHHH
T ss_pred eHHHHHHH
Confidence 76665553
No 165
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=86.28 E-value=4.4 Score=27.25 Aligned_cols=74 Identities=20% Similarity=0.359 Sum_probs=46.0
Q ss_pred CCeEEEeeCCCchHHHHHHHHHhcC--CCCceeEEeccCCCChhhhhhhcCCCCCCCeEE--eCCeEe------echHHH
Q 026482 27 GTTRLYMAYTCPFAQRVWITRNYKG--LQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLE--HNGKII------GESLDL 96 (238)
Q Consensus 27 ~~~~Ly~~~~sp~~~~v~~~L~~~g--ipy~~~~~~v~~~~~~~~~~~~~~p~~~vP~L~--~~g~~l------~eS~aI 96 (238)
..+..++.++|+.|+...-.+.... .+..+.+..+|....++.... .....+|++. .+|..+ .+...|
T Consensus 19 ~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~--~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l 96 (103)
T PF00085_consen 19 PVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKK--YGVKSVPTIIFFKNGKEVKRYNGPRNAESL 96 (103)
T ss_dssp EEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHH--TTCSSSSEEEEEETTEEEEEEESSSSHHHH
T ss_pred CEEEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhc--cCCCCCCEEEEEECCcEEEEEECCCCHHHH
Confidence 3467788899999998764443221 111477777887666554432 3467899997 566543 245566
Q ss_pred HHHHHh
Q 026482 97 INYVDS 102 (238)
Q Consensus 97 ~~yL~~ 102 (238)
.++|.+
T Consensus 97 ~~~i~~ 102 (103)
T PF00085_consen 97 IEFIEK 102 (103)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 666643
No 166
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.71 E-value=2.9 Score=29.87 Aligned_cols=66 Identities=15% Similarity=0.190 Sum_probs=45.2
Q ss_pred CCCchHHH----HHHHHHhcCCCCceeEEeccCCCChhhhhhhcCCCC-------CCCeEE--e-CCeEeechHHHHHHH
Q 026482 35 YTCPFAQR----VWITRNYKGLQDEIKLVAFDLQDKPAWYKEKVYPSN-------KVPSLE--H-NGKIIGESLDLINYV 100 (238)
Q Consensus 35 ~~sp~~~~----v~~~L~~~gipy~~~~~~v~~~~~~~~~~~~~~p~~-------~vP~L~--~-~g~~l~eS~aI~~yL 100 (238)
+|||.|.+ +.-+|++..- +..++.+..++.+.|.-. .||+. .||+|. . .++.+.+...-...|
T Consensus 43 SWCPdCV~AEPvi~~alk~ap~--~~~~v~v~VG~rp~Wk~p-~n~FR~d~~~lt~vPTLlrw~~~~~rL~~~q~~~~~L 119 (128)
T KOG3425|consen 43 SWCPDCVAAEPVINEALKHAPE--DVHFVHVYVGNRPYWKDP-ANPFRKDPGILTAVPTLLRWKRQPQRLDGLQCLNDHL 119 (128)
T ss_pred cCCchHHHhhHHHHHHHHhCCC--ceEEEEEEecCCCcccCC-CCccccCCCceeecceeeEEcCccccchHhHhhHHHH
Confidence 47999976 4556665555 688888888888877654 45542 478887 3 356677777777777
Q ss_pred Hhc
Q 026482 101 DSN 103 (238)
Q Consensus 101 ~~~ 103 (238)
.+.
T Consensus 120 ve~ 122 (128)
T KOG3425|consen 120 VEM 122 (128)
T ss_pred HHH
Confidence 654
No 167
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=85.30 E-value=2.7 Score=30.17 Aligned_cols=20 Identities=25% Similarity=0.323 Sum_probs=14.9
Q ss_pred eEEEeeCCCchHHHHHHHHH
Q 026482 29 TRLYMAYTCPFAQRVWITRN 48 (238)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~L~ 48 (238)
+..|+.++||+|+.+.=.|.
T Consensus 27 iv~f~~~~Cp~C~~~~P~l~ 46 (122)
T TIGR01295 27 TFFIGRKTCPYCRKFSGTLS 46 (122)
T ss_pred EEEEECCCChhHHHHhHHHH
Confidence 55677799999998555544
No 168
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=83.91 E-value=5.7 Score=26.85 Aligned_cols=61 Identities=13% Similarity=0.244 Sum_probs=37.8
Q ss_pred CeEEEeeCCCchHHHHHHHHHhc--CCCCceeEEeccCCCChhhhhhhcCCCCCCCeEE--eCCeEe
Q 026482 28 TTRLYMAYTCPFAQRVWITRNYK--GLQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLE--HNGKII 90 (238)
Q Consensus 28 ~~~Ly~~~~sp~~~~v~~~L~~~--gipy~~~~~~v~~~~~~~~~~~~~~p~~~vP~L~--~~g~~l 90 (238)
.+.+|+.++|+.|+...-.+... .....+.+..+|....++.... . -...+|++. .+|..+
T Consensus 16 vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~-~-~v~~vPt~~i~~~g~~v 80 (97)
T cd02949 16 ILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEA-A-GIMGTPTVQFFKDKELV 80 (97)
T ss_pred EEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHH-C-CCeeccEEEEEECCeEE
Confidence 46677789999999876666431 1221366677777655544322 2 346789887 566654
No 169
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=83.69 E-value=6.4 Score=27.69 Aligned_cols=61 Identities=13% Similarity=0.107 Sum_probs=40.4
Q ss_pred CeEEEeeCCCchHHHHHHHHHh--cCCCCceeEEeccCCCChhhhhhhcCCCCCCCeEE--eCCeEee
Q 026482 28 TTRLYMAYTCPFAQRVWITRNY--KGLQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLE--HNGKIIG 91 (238)
Q Consensus 28 ~~~Ly~~~~sp~~~~v~~~L~~--~gipy~~~~~~v~~~~~~~~~~~~~~p~~~vP~L~--~~g~~l~ 91 (238)
.+..|+.++|+.|+.+.-.++. ...+ ++.++.+|....++... -.....+|+++ .+|..+.
T Consensus 25 vvV~f~a~~c~~C~~~~p~l~~la~~~~-~i~f~~Vd~~~~~~l~~--~~~v~~vPt~l~fk~G~~v~ 89 (113)
T cd02989 25 VVCHFYHPEFFRCKIMDKHLEILAKKHL-ETKFIKVNAEKAPFLVE--KLNIKVLPTVILFKNGKTVD 89 (113)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHHcC-CCEEEEEEcccCHHHHH--HCCCccCCEEEEEECCEEEE
Confidence 3667777999999987766643 1233 36777888766554332 34567899998 6777655
No 170
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=82.68 E-value=9.6 Score=25.41 Aligned_cols=61 Identities=11% Similarity=0.122 Sum_probs=38.8
Q ss_pred CeEEEeeCCCchHHHHHHHHHhcCC--CCceeEEeccCCCChhhhhhhcCCCCCCCeEE--eCCeEe
Q 026482 28 TTRLYMAYTCPFAQRVWITRNYKGL--QDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLE--HNGKII 90 (238)
Q Consensus 28 ~~~Ly~~~~sp~~~~v~~~L~~~gi--py~~~~~~v~~~~~~~~~~~~~~p~~~vP~L~--~~g~~l 90 (238)
.+..|+.++|+.|++..-.|....- .-.+.+..++....++.... .+ ...+|++. .+|..+
T Consensus 17 v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~-~~-i~~~Pt~~~~~~g~~~ 81 (97)
T cd02984 17 LVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEK-FE-ITAVPTFVFFRNGTIV 81 (97)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHh-cC-CccccEEEEEECCEEE
Confidence 3667778999999987666653111 11477777777666655433 44 45699887 566543
No 171
>PF11801 Tom37_C: Tom37 C-terminal domain; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=82.46 E-value=1.9 Score=32.92 Aligned_cols=40 Identities=20% Similarity=0.375 Sum_probs=30.7
Q ss_pred HHhhHHHHHHHHhhccCCCCcccC-C-ccHHHHHHhhHHHHH
Q 026482 145 EAGPAFDFLEKALDKFDDGPFFLG-Q-FSLVDIAYIPFVDGY 184 (238)
Q Consensus 145 ~~~~~l~~le~~L~~~~~~~~l~G-~-~t~aD~~l~~~l~~~ 184 (238)
...+++..|++.|+......|++| . +|-+||.+++.|.-+
T Consensus 112 ~a~~~l~~L~~~L~~~~~~~~~f~~~~psslD~L~~ayL~l~ 153 (168)
T PF11801_consen 112 LAMECLSLLEELLGEWEEARYFFGDSKPSSLDCLAFAYLALL 153 (168)
T ss_pred HHHHHHHHHHHHHhhccccccccCCCCCCHHHHHHHHHHHHH
Confidence 457888999999983111278888 4 999999999998654
No 172
>PRK09381 trxA thioredoxin; Provisional
Probab=79.33 E-value=8.9 Score=26.36 Aligned_cols=61 Identities=13% Similarity=0.183 Sum_probs=36.0
Q ss_pred CeEEEeeCCCchHHHHHHHHHhc--CCCCceeEEeccCCCChhhhhhhcCCCCCCCeEE--eCCeEe
Q 026482 28 TTRLYMAYTCPFAQRVWITRNYK--GLQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLE--HNGKII 90 (238)
Q Consensus 28 ~~~Ly~~~~sp~~~~v~~~L~~~--gipy~~~~~~v~~~~~~~~~~~~~~p~~~vP~L~--~~g~~l 90 (238)
.+..++.++||.|+...-.++.. ..+-.+.+..++....+..... . ....+|+++ .+|..+
T Consensus 24 vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~-~-~v~~~Pt~~~~~~G~~~ 88 (109)
T PRK09381 24 ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPK-Y-GIRGIPTLLLFKNGEVA 88 (109)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHh-C-CCCcCCEEEEEeCCeEE
Confidence 46667778999998765444321 1111356666776555544332 3 456799887 566644
No 173
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=78.61 E-value=7.4 Score=27.34 Aligned_cols=54 Identities=15% Similarity=0.241 Sum_probs=32.9
Q ss_pred eEEE-eeCCCchHHHHHHHHHhcCCCC-ceeEEeccCCCChhhhhhhcCCCCCCCeEE
Q 026482 29 TRLY-MAYTCPFAQRVWITRNYKGLQD-EIKLVAFDLQDKPAWYKEKVYPSNKVPSLE 84 (238)
Q Consensus 29 ~~Ly-~~~~sp~~~~v~~~L~~~gipy-~~~~~~v~~~~~~~~~~~~~~p~~~vP~L~ 84 (238)
+.++ +.++||+|+.++-+++...-.+ .+++..++....++ +.. .-....+|++.
T Consensus 25 vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~~~-l~~-~~~v~~vPt~~ 80 (113)
T cd02975 25 LVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDEDKE-KAE-KYGVERVPTTI 80 (113)
T ss_pred EEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCcCHH-HHH-HcCCCcCCEEE
Confidence 5555 5579999998777776432111 25566666654443 332 33467799998
No 174
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=76.91 E-value=7.9 Score=30.86 Aligned_cols=71 Identities=17% Similarity=0.173 Sum_probs=51.0
Q ss_pred CCeEEEee-----CCCchHHHHHHHHHhcCCCCceeEEeccCCCC-hhhhhhhcCCCCCCCeEEeCCeEeechHHHHHHH
Q 026482 27 GTTRLYMA-----YTCPFAQRVWITRNYKGLQDEIKLVAFDLQDK-PAWYKEKVYPSNKVPSLEHNGKIIGESLDLINYV 100 (238)
Q Consensus 27 ~~~~Ly~~-----~~sp~~~~v~~~L~~~gipy~~~~~~v~~~~~-~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL 100 (238)
..+.||-- |-|+|++.+.-+|...|++ |+..+|-..+. .+-++. .+-..+.|=|-.+|..+.+...|.+-+
T Consensus 139 ~~v~lFmKG~p~~P~CGFS~~~v~iL~~~nV~--~~~fdIL~DeelRqglK~-fSdWPTfPQlyI~GEFiGGlDIl~~m~ 215 (227)
T KOG0911|consen 139 KPVMLFMKGTPEEPKCGFSRQLVGILQSHNVN--YTIFDVLTDEELRQGLKE-FSDWPTFPQLYVKGEFIGGLDILKEMH 215 (227)
T ss_pred CeEEEEecCCCCcccccccHHHHHHHHHcCCC--eeEEeccCCHHHHHHhhh-hcCCCCccceeECCEeccCcHHHHHHh
Confidence 34666643 5699999999999999997 67776643211 233333 666777888889999999888777754
No 175
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=76.71 E-value=10 Score=30.03 Aligned_cols=55 Identities=18% Similarity=0.349 Sum_probs=35.6
Q ss_pred CeEEEeeCCCchHHHHHHHHHhcCC-CCceeEEeccCCCChhhhhhhcCCCCCCCeEE
Q 026482 28 TTRLYMAYTCPFAQRVWITRNYKGL-QDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLE 84 (238)
Q Consensus 28 ~~~Ly~~~~sp~~~~v~~~L~~~gi-py~~~~~~v~~~~~~~~~~~~~~p~~~vP~L~ 84 (238)
.+.+|+.++||+|..+.-++...-- ..++.+..+|....++.-. ......+|+++
T Consensus 136 ~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~~~~~~--~~~V~~vPtl~ 191 (215)
T TIGR02187 136 RIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANENPDLAE--KYGVMSVPKIV 191 (215)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCCHHHHH--HhCCccCCEEE
Confidence 4777999999999987776664321 1135556667655554332 33456799998
No 176
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=74.21 E-value=15 Score=23.57 Aligned_cols=59 Identities=19% Similarity=0.263 Sum_probs=35.2
Q ss_pred CeEEEeeCCCchHHHHHHHHHhcCC-CCceeEEeccCCCChhhhhhhcCCCCCCCeEE--eCCe
Q 026482 28 TTRLYMAYTCPFAQRVWITRNYKGL-QDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLE--HNGK 88 (238)
Q Consensus 28 ~~~Ly~~~~sp~~~~v~~~L~~~gi-py~~~~~~v~~~~~~~~~~~~~~p~~~vP~L~--~~g~ 88 (238)
.+.+++.++|+.|+...-.+...-. .-.+.+..++....++... ......+|+++ .+|.
T Consensus 13 ~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~v~~~P~~~~~~~g~ 74 (93)
T cd02947 13 VVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDENPELAE--EYGVRSIPTFLFFKNGK 74 (93)
T ss_pred EEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCCChhHHH--hcCcccccEEEEEECCE
Confidence 3677888899999887776665111 1134555556554444332 23345689987 4665
No 177
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=72.57 E-value=5.7 Score=27.79 Aligned_cols=29 Identities=10% Similarity=0.328 Sum_probs=21.6
Q ss_pred EeeCCCchHHHHHHHHHhcCCCCceeEEecc
Q 026482 32 YMAYTCPFAQRVWITRNYKGLQDEIKLVAFD 62 (238)
Q Consensus 32 y~~~~sp~~~~v~~~L~~~gipy~~~~~~v~ 62 (238)
|+.+.|.=|++++-.|+++|++ ++++++.
T Consensus 1 Y~~~~C~t~rka~~~L~~~gi~--~~~~d~~ 29 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEENGIE--YEFIDYK 29 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHTT----EEEEETT
T ss_pred CcCCCCHHHHHHHHHHHHcCCC--eEeehhh
Confidence 7889999999999999999996 6776543
No 178
>PTZ00051 thioredoxin; Provisional
Probab=72.34 E-value=12 Score=25.05 Aligned_cols=60 Identities=13% Similarity=0.183 Sum_probs=34.9
Q ss_pred CeEEEeeCCCchHHHHHHHHHhcC--CCCceeEEeccCCCChhhhhhhcCCCCCCCeEE--eCCeEe
Q 026482 28 TTRLYMAYTCPFAQRVWITRNYKG--LQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLE--HNGKII 90 (238)
Q Consensus 28 ~~~Ly~~~~sp~~~~v~~~L~~~g--ipy~~~~~~v~~~~~~~~~~~~~~p~~~vP~L~--~~g~~l 90 (238)
.+..|+.++|+.|+...-.+.... .+ ++.++.++......... ......+|+++ .+|..+
T Consensus 21 vli~f~~~~C~~C~~~~~~l~~l~~~~~-~~~~~~vd~~~~~~~~~--~~~v~~~Pt~~~~~~g~~~ 84 (98)
T PTZ00051 21 VIVDFYAEWCGPCKRIAPFYEECSKEYT-KMVFVKVDVDELSEVAE--KENITSMPTFKVFKNGSVV 84 (98)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHcC-CcEEEEEECcchHHHHH--HCCCceeeEEEEEeCCeEE
Confidence 366778899999997755554321 11 35556666544433332 23456789887 466543
No 179
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=71.99 E-value=7.7 Score=35.58 Aligned_cols=58 Identities=12% Similarity=0.288 Sum_probs=36.7
Q ss_pred CeEEEeeCCCchHHHHHH----HHHhc-CCCCceeEEeccCCCChhhhhhhcCCCCCCCeEEeCCeEee
Q 026482 28 TTRLYMAYTCPFAQRVWI----TRNYK-GLQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLEHNGKIIG 91 (238)
Q Consensus 28 ~~~Ly~~~~sp~~~~v~~----~L~~~-gipy~~~~~~v~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~ 91 (238)
.+++|..++||+|..+.- +..+. +| +.+.+++ .+.++... -.....||.++.||.++.
T Consensus 479 ~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i--~~~~i~~--~~~~~~~~--~~~v~~vP~~~i~~~~~~ 541 (555)
T TIGR03143 479 NIKIGVSLSCTLCPDVVLAAQRIASLNPNV--EAEMIDV--SHFPDLKD--EYGIMSVPAIVVDDQQVY 541 (555)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCCc--eEEEEEC--cccHHHHH--hCCceecCEEEECCEEEE
Confidence 588999999999976444 33443 45 3555443 44454432 235678999997776543
No 180
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=71.38 E-value=17 Score=24.20 Aligned_cols=59 Identities=12% Similarity=0.158 Sum_probs=35.6
Q ss_pred eEEEeeCCCchHHHHHHHHHhcC--CCCceeEEeccCCCChhhhhhhcCCCCCCCeEE--eCCeE
Q 026482 29 TRLYMAYTCPFAQRVWITRNYKG--LQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLE--HNGKI 89 (238)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~L~~~g--ipy~~~~~~v~~~~~~~~~~~~~~p~~~vP~L~--~~g~~ 89 (238)
+..++.++|+.|+...-.+.... .+-.+.+..++....++... .-....+|+++ .+|..
T Consensus 16 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~--~~~i~~~Pt~~~~~~g~~ 78 (96)
T cd02956 16 VVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQ--QFGVQALPTVYLFAAGQP 78 (96)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHH--HcCCCCCCEEEEEeCCEE
Confidence 55677789999997665554322 11125666777655544332 22456799998 66654
No 181
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=69.73 E-value=12 Score=26.00 Aligned_cols=58 Identities=10% Similarity=0.109 Sum_probs=33.9
Q ss_pred CeEEEeeCCCchHHHHHHHHH-----hcCCCCceeEEeccCCCChhhhhhhcCCCCCCCeEE--eCCeE
Q 026482 28 TTRLYMAYTCPFAQRVWITRN-----YKGLQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLE--HNGKI 89 (238)
Q Consensus 28 ~~~Ly~~~~sp~~~~v~~~L~-----~~gipy~~~~~~v~~~~~~~~~~~~~~p~~~vP~L~--~~g~~ 89 (238)
.+..++.++|+.|+...-.+. +.+. .+.+..++....+.... ......+|+++ .+|..
T Consensus 27 vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~--~v~~~~vd~d~~~~l~~--~~~V~~~Pt~~i~~~g~~ 91 (111)
T cd02963 27 YLIKITSDWCFSCIHIEPVWKEVIQELEPL--GVGIATVNAGHERRLAR--KLGAHSVPAIVGIINGQV 91 (111)
T ss_pred EEEEEECCccHhHHHhhHHHHHHHHHHHhc--CceEEEEeccccHHHHH--HcCCccCCEEEEEECCEE
Confidence 466678899999986543332 2222 24555666544443322 23467899887 56654
No 182
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=69.48 E-value=18 Score=27.11 Aligned_cols=62 Identities=15% Similarity=0.164 Sum_probs=37.0
Q ss_pred eEEEeeCCCchHHHHHHHHHhcCC--C-CceeEEeccCCCChhhhhhhcCCC-----CCCCeEE--eCCeEee
Q 026482 29 TRLYMAYTCPFAQRVWITRNYKGL--Q-DEIKLVAFDLQDKPAWYKEKVYPS-----NKVPSLE--HNGKIIG 91 (238)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~L~~~gi--p-y~~~~~~v~~~~~~~~~~~~~~p~-----~~vP~L~--~~g~~l~ 91 (238)
+..|+.++||.|+...-.++..-- . ..+++..||....++.-.. .+-. .++|+++ .+|+.+.
T Consensus 51 vV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~-~~V~~~~~v~~~PT~ilf~~Gk~v~ 122 (152)
T cd02962 51 LVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEK-FRVSTSPLSKQLPTIILFQGGKEVA 122 (152)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHH-cCceecCCcCCCCEEEEEECCEEEE
Confidence 667778899999876544432211 1 1367777777665543322 3221 3489997 6776654
No 183
>PRK10996 thioredoxin 2; Provisional
Probab=69.38 E-value=29 Score=25.30 Aligned_cols=61 Identities=10% Similarity=0.151 Sum_probs=37.8
Q ss_pred CeEEEeeCCCchHHHHHHHHHhc--CCCCceeEEeccCCCChhhhhhhcCCCCCCCeEE--eCCeEe
Q 026482 28 TTRLYMAYTCPFAQRVWITRNYK--GLQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLE--HNGKII 90 (238)
Q Consensus 28 ~~~Ly~~~~sp~~~~v~~~L~~~--gipy~~~~~~v~~~~~~~~~~~~~~p~~~vP~L~--~~g~~l 90 (238)
.+..|+.++|+.|+...-.+... ...-.+.+..+|....++.... . -...+|+++ .+|+.+
T Consensus 55 vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~-~-~V~~~Ptlii~~~G~~v 119 (139)
T PRK10996 55 VVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSAR-F-RIRSIPTIMIFKNGQVV 119 (139)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHh-c-CCCccCEEEEEECCEEE
Confidence 35677778999998754444321 1122467777777666654432 3 456799987 567644
No 184
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=69.36 E-value=11 Score=26.69 Aligned_cols=63 Identities=14% Similarity=0.194 Sum_probs=33.1
Q ss_pred CeEEEeeCCCchHHHHHHHHHhc-C---CCCceeEEeccCCCChhhhhhhcCCCC-CCCeEE--e-CCeEeec
Q 026482 28 TTRLYMAYTCPFAQRVWITRNYK-G---LQDEIKLVAFDLQDKPAWYKEKVYPSN-KVPSLE--H-NGKIIGE 92 (238)
Q Consensus 28 ~~~Ly~~~~sp~~~~v~~~L~~~-g---ipy~~~~~~v~~~~~~~~~~~~~~p~~-~vP~L~--~-~g~~l~e 92 (238)
.+.-++.++|+.|+...-.+... . ..-++..+.++....+ ... ..+..| .+|+++ + +|..+..
T Consensus 22 VlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~-~~~-~~~~~g~~vPt~~f~~~~Gk~~~~ 92 (117)
T cd02959 22 LMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEP-KDE-EFSPDGGYIPRILFLDPSGDVHPE 92 (117)
T ss_pred EEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCc-hhh-hcccCCCccceEEEECCCCCCchh
Confidence 35567778999998765544431 1 1113444444432211 111 244444 599997 3 5665543
No 185
>PHA02278 thioredoxin-like protein
Probab=69.35 E-value=32 Score=23.73 Aligned_cols=61 Identities=8% Similarity=0.107 Sum_probs=33.0
Q ss_pred eEEEeeCCCchHHHHHHHHHhc--CCCCceeEEeccCCCC---hhhhhhhcCCCCCCCeEE--eCCeEe
Q 026482 29 TRLYMAYTCPFAQRVWITRNYK--GLQDEIKLVAFDLQDK---PAWYKEKVYPSNKVPSLE--HNGKII 90 (238)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~L~~~--gipy~~~~~~v~~~~~---~~~~~~~~~p~~~vP~L~--~~g~~l 90 (238)
+.-|+.++|+.|+.+.=.++.. .......+..++.... .+.+.. ..-...+|+++ .+|..+
T Consensus 18 vV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~-~~~I~~iPT~i~fk~G~~v 85 (103)
T PHA02278 18 IVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVK-LFDIMSTPVLIGYKDGQLV 85 (103)
T ss_pred EEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHH-HCCCccccEEEEEECCEEE
Confidence 5556678999999766444332 1111234455554432 122322 23456789997 577654
No 186
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=69.25 E-value=13 Score=31.03 Aligned_cols=75 Identities=16% Similarity=0.299 Sum_probs=51.4
Q ss_pred CCeEEEeeCCCchHHHHH-----HHHHhcCCCCceeEEeccCCCChhhhhhhcCCCCCCCeEE--eCCeEeec------h
Q 026482 27 GTTRLYMAYTCPFAQRVW-----ITRNYKGLQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLE--HNGKIIGE------S 93 (238)
Q Consensus 27 ~~~~Ly~~~~sp~~~~v~-----~~L~~~gipy~~~~~~v~~~~~~~~~~~~~~p~~~vP~L~--~~g~~l~e------S 93 (238)
..+.+|+.++|+-|.... +.-+++|- +.+..|+....+..-. ......||+++ -+|+.+.+ -
T Consensus 45 PVlV~fWap~~~~c~qL~p~Lekla~~~~G~---f~LakvN~D~~p~vAa--qfgiqsIPtV~af~dGqpVdgF~G~qPe 119 (304)
T COG3118 45 PVLVDFWAPWCGPCKQLTPTLEKLAAEYKGK---FKLAKVNCDAEPMVAA--QFGVQSIPTVYAFKDGQPVDGFQGAQPE 119 (304)
T ss_pred CeEEEecCCCCchHHHHHHHHHHHHHHhCCc---eEEEEecCCcchhHHH--HhCcCcCCeEEEeeCCcCccccCCCCcH
Confidence 347788889999998654 34456776 8888888876665432 34557799887 56655433 4
Q ss_pred HHHHHHHHhcCCC
Q 026482 94 LDLINYVDSNFEG 106 (238)
Q Consensus 94 ~aI~~yL~~~~~~ 106 (238)
.+|-++|++..+.
T Consensus 120 sqlr~~ld~~~~~ 132 (304)
T COG3118 120 SQLRQFLDKVLPA 132 (304)
T ss_pred HHHHHHHHHhcCh
Confidence 5788888887663
No 187
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=69.14 E-value=9.5 Score=34.59 Aligned_cols=75 Identities=17% Similarity=0.170 Sum_probs=46.7
Q ss_pred CCCeEEEeeCCCchHHHHHHHHHhcCC--CCceeEEeccCCCChhhhhhhcCCCCCCCeEEeCCeEeec----hHHHHHH
Q 026482 26 DGTTRLYMAYTCPFAQRVWITRNYKGL--QDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLEHNGKIIGE----SLDLINY 99 (238)
Q Consensus 26 ~~~~~Ly~~~~sp~~~~v~~~L~~~gi--py~~~~~~v~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~e----S~aI~~y 99 (238)
+-.+++|..+.||||-.+.-++....+ | .++...++....++... ......||.++.+|..+.+ -..+++.
T Consensus 117 ~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~-~i~~~~id~~~~~~~~~--~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~ 193 (517)
T PRK15317 117 DFHFETYVSLSCHNCPDVVQALNLMAVLNP-NITHTMIDGALFQDEVE--ARNIMAVPTVFLNGEEFGQGRMTLEEILAK 193 (517)
T ss_pred CeEEEEEEcCCCCCcHHHHHHHHHHHHhCC-CceEEEEEchhCHhHHH--hcCCcccCEEEECCcEEEecCCCHHHHHHH
Confidence 345899999999999876555543322 2 35555555555565543 2346789999977765544 3355666
Q ss_pred HHhc
Q 026482 100 VDSN 103 (238)
Q Consensus 100 L~~~ 103 (238)
+.+.
T Consensus 194 ~~~~ 197 (517)
T PRK15317 194 LDTG 197 (517)
T ss_pred Hhcc
Confidence 6543
No 188
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=68.30 E-value=15 Score=24.39 Aligned_cols=59 Identities=17% Similarity=0.232 Sum_probs=35.1
Q ss_pred CeEEEeeCCCchHHHHHHHHHhc--CCCCceeEEeccCCCChhhhhhhcCCCCCCCeEE--eCCe
Q 026482 28 TTRLYMAYTCPFAQRVWITRNYK--GLQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLE--HNGK 88 (238)
Q Consensus 28 ~~~Ly~~~~sp~~~~v~~~L~~~--gipy~~~~~~v~~~~~~~~~~~~~~p~~~vP~L~--~~g~ 88 (238)
.+..++.++|+.|+...-.+... ..+-.+.+..++....+..... . -...+|+++ .+|.
T Consensus 17 vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~-~-~v~~~P~~~~~~~g~ 79 (101)
T TIGR01068 17 VLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAK-Y-GIRSIPTLLLFKNGK 79 (101)
T ss_pred EEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHH-c-CCCcCCEEEEEeCCc
Confidence 35567778999998765544321 1221367777776655544432 3 345799887 4554
No 189
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=68.00 E-value=26 Score=24.83 Aligned_cols=60 Identities=12% Similarity=0.115 Sum_probs=36.9
Q ss_pred eEEEeeCCCchHHHHHHHHHhc--CCCCceeEEeccCCCChhhhhhhcCCCCCCCeEE--eCCeEe
Q 026482 29 TRLYMAYTCPFAQRVWITRNYK--GLQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLE--HNGKII 90 (238)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~L~~~--gipy~~~~~~v~~~~~~~~~~~~~~p~~~vP~L~--~~g~~l 90 (238)
+.-|+.+|||.|+.+.=.++.. ..+-.+.+..||....++.-. ..-...+|++. .+|..+
T Consensus 18 VV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~--~~~V~~iPTf~~fk~G~~v 81 (114)
T cd02954 18 VIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNK--MYELYDPPTVMFFFRNKHM 81 (114)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHH--HcCCCCCCEEEEEECCEEE
Confidence 4457778999999765555322 122125677788776654332 22345699997 566654
No 190
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=66.44 E-value=11 Score=34.08 Aligned_cols=74 Identities=18% Similarity=0.143 Sum_probs=46.0
Q ss_pred CCeEEEeeCCCchHHHHHHHHHhcCC--CCceeEEeccCCCChhhhhhhcCCCCCCCeEEeCCeEeec----hHHHHHHH
Q 026482 27 GTTRLYMAYTCPFAQRVWITRNYKGL--QDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLEHNGKIIGE----SLDLINYV 100 (238)
Q Consensus 27 ~~~~Ly~~~~sp~~~~v~~~L~~~gi--py~~~~~~v~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~e----S~aI~~yL 100 (238)
-.+++|..+.||||-.+.-++....+ | .++...++....++... ......||.++.+|..+.+ -..+++.+
T Consensus 119 ~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p-~i~~~~id~~~~~~~~~--~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~l 195 (515)
T TIGR03140 119 LHFETYVSLTCQNCPDVVQALNQMALLNP-NISHTMIDGALFQDEVE--ALGIQGVPAVFLNGEEFHNGRMDLAELLEKL 195 (515)
T ss_pred eEEEEEEeCCCCCCHHHHHHHHHHHHhCC-CceEEEEEchhCHHHHH--hcCCcccCEEEECCcEEEecCCCHHHHHHHH
Confidence 35899999999999876665554332 2 34555555555565553 3346689999977665544 23444555
Q ss_pred Hhc
Q 026482 101 DSN 103 (238)
Q Consensus 101 ~~~ 103 (238)
.+.
T Consensus 196 ~~~ 198 (515)
T TIGR03140 196 EET 198 (515)
T ss_pred hhc
Confidence 443
No 191
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=65.98 E-value=51 Score=24.26 Aligned_cols=83 Identities=14% Similarity=0.152 Sum_probs=47.8
Q ss_pred CCCCCCCCeEEEeeCCCchHHH-HHHHHHhcCCCCceeEEeccCCCChhhhhh-hcCCCC-CCCeEEeCCeEeechHHHH
Q 026482 21 PPPLFDGTTRLYMAYTCPFAQR-VWITRNYKGLQDEIKLVAFDLQDKPAWYKE-KVYPSN-KVPSLEHNGKIIGESLDLI 97 (238)
Q Consensus 21 ~~~~~~~~~~Ly~~~~sp~~~~-v~~~L~~~gipy~~~~~~v~~~~~~~~~~~-~~~p~~-~vP~L~~~g~~l~eS~aI~ 97 (238)
.|.|++..+.+++.--||+|-. |+.++.. .-.=.+++..+.....-.-+.. +..|.. ..=.++++|..+.+|.|++
T Consensus 2 ~~~~~~p~~vvlyDG~C~lC~~~vrfLi~~-D~~~~i~f~~~q~e~g~~~l~~~~l~~~~~~s~~~~~~g~~~~~sdA~~ 80 (137)
T COG3011 2 LPQMKKPDLVVLYDGVCPLCDGWVRFLIRR-DQGGRIRFAALQSEPGQALLEAAGLDPEDVDSVLLVEAGQLLVGSDAAI 80 (137)
T ss_pred CCCCCCCCEEEEECCcchhHHHHHHHHHHh-ccCCcEEEEeccCchhhhHHhhcCCChhhhheeeEecCCceEeccHHHH
Confidence 3456677777777778999976 5554444 3321366655544322222211 111111 1122347899999999999
Q ss_pred HHHHhcC
Q 026482 98 NYVDSNF 104 (238)
Q Consensus 98 ~yL~~~~ 104 (238)
+-+....
T Consensus 81 ~i~~~L~ 87 (137)
T COG3011 81 RILRLLP 87 (137)
T ss_pred HHHHHCC
Confidence 9887765
No 192
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=65.90 E-value=22 Score=24.14 Aligned_cols=53 Identities=11% Similarity=-0.012 Sum_probs=30.9
Q ss_pred CeEEEeeCCCchHHHHHHHH--------HhcCCCCceeEEeccCCCC---hhhhhhhcCCCCCCCeEE
Q 026482 28 TTRLYMAYTCPFAQRVWITR--------NYKGLQDEIKLVAFDLQDK---PAWYKEKVYPSNKVPSLE 84 (238)
Q Consensus 28 ~~~Ly~~~~sp~~~~v~~~L--------~~~gipy~~~~~~v~~~~~---~~~~~~~~~p~~~vP~L~ 84 (238)
.+..|+.++|++|++..-.+ ...+ .+.++.++.... ...+.. ......+|++.
T Consensus 14 vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~---~~~~~~vd~~~~~~~~~~~~~-~~~i~~~Pti~ 77 (104)
T cd02953 14 VFVDFTADWCVTCKVNEKVVFSDPEVQAALKK---DVVLLRADWTKNDPEITALLK-RFGVFGPPTYL 77 (104)
T ss_pred EEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC---CeEEEEEecCCCCHHHHHHHH-HcCCCCCCEEE
Confidence 36677889999999875333 1222 266666665432 122322 23456799887
No 193
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=64.43 E-value=33 Score=23.05 Aligned_cols=59 Identities=17% Similarity=0.154 Sum_probs=34.8
Q ss_pred CeEEEeeCCCchHHHHHHHHHhcC--CCCceeEEeccCCCChhhhhhhcCCCCCCCeEE--eCCe
Q 026482 28 TTRLYMAYTCPFAQRVWITRNYKG--LQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLE--HNGK 88 (238)
Q Consensus 28 ~~~Ly~~~~sp~~~~v~~~L~~~g--ipy~~~~~~v~~~~~~~~~~~~~~p~~~vP~L~--~~g~ 88 (238)
.+..|+.++|+.|+...-.+.... ..-.+.+..++....+..... . ....+|++. .+|.
T Consensus 21 ~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~-~-~v~~~Pt~~~~~~g~ 83 (101)
T cd03003 21 WFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRS-Q-GVNSYPSLYVFPSGM 83 (101)
T ss_pred EEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHH-c-CCCccCEEEEEcCCC
Confidence 366788899999987555443221 111256667776655544322 2 356789886 4553
No 194
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=64.40 E-value=8 Score=27.73 Aligned_cols=60 Identities=22% Similarity=0.326 Sum_probs=30.4
Q ss_pred CCCchHHHHHHHHHh--cCCCCceeEEeccCCCChhhhhhhcC-----C---CCCCCeEE--eCCeEeechHH
Q 026482 35 YTCPFAQRVWITRNY--KGLQDEIKLVAFDLQDKPAWYKEKVY-----P---SNKVPSLE--HNGKIIGESLD 95 (238)
Q Consensus 35 ~~sp~~~~v~~~L~~--~gipy~~~~~~v~~~~~~~~~~~~~~-----p---~~~vP~L~--~~g~~l~eS~a 95 (238)
+|||.|.++.-+++. ...|-+..++.+..++.+.|.-. .| | ...||+|+ .++..|.|...
T Consensus 36 sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp-~n~fR~~p~~~l~~IPTLi~~~~~~rL~e~e~ 107 (119)
T PF06110_consen 36 SWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDP-NNPFRTDPDLKLKGIPTLIRWETGERLVEEEC 107 (119)
T ss_dssp BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-T-TSHHHH--CC---SSSEEEECTSS-EEEHHHH
T ss_pred cccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCC-CCCceEcceeeeeecceEEEECCCCccchhhh
Confidence 479999876543332 12333466666666666555422 22 3 25699998 45666766543
No 195
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=64.29 E-value=42 Score=22.75 Aligned_cols=59 Identities=15% Similarity=0.115 Sum_probs=32.5
Q ss_pred eEEEeeCCCchHHHHHHHHHhc--CCCC-ceeEEeccCCCChhhhhhhcCCCCCCCeEE--eCCeEe
Q 026482 29 TRLYMAYTCPFAQRVWITRNYK--GLQD-EIKLVAFDLQDKPAWYKEKVYPSNKVPSLE--HNGKII 90 (238)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~L~~~--gipy-~~~~~~v~~~~~~~~~~~~~~p~~~vP~L~--~~g~~l 90 (238)
+..|+.++|+.|+...-.+... .... .+.+..++.. .++... -.-...+|+++ .+|..+
T Consensus 21 vv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~--~~~v~~~Pt~~~~~~g~~~ 84 (102)
T cd02948 21 VVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDTLK--RYRGKCEPTFLFYKNGELV 84 (102)
T ss_pred EEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHHHH--HcCCCcCcEEEEEECCEEE
Confidence 5567778999998765444321 1110 2455555554 333322 23456789886 566543
No 196
>PF09635 MetRS-N: MetRS-N binding domain; InterPro: IPR018285 This entry represents the N-terminal domain of methionyl-tRNA synthetase (MetRS). This N-terminal appended domain mediates non-catalytic complex formation through its interaction with a domain in the tRNA aminoacylation cofactor Arc1p. The interacting domains of MetRS, GluRS (glutamyl-tRNA synthetase) and Arc1p form a ternary complex resembling a classical GST homo-dimer []. Domain-swapping between symmetrically related MetRS-N and Arc1p-N domains generates a 2:2 tetramer held together by van der Waals forces. This domain is necessary for formation of the aminoacyl-tRNA synthetase complex necessary for tRNA nuclear export and shuttling as part of the translational apparatus. ; PDB: 2HSN_A.
Probab=62.67 E-value=6.7 Score=28.11 Aligned_cols=27 Identities=26% Similarity=0.459 Sum_probs=13.4
Q ss_pred CCCeEE--eCCeEeechHHHHHHHHhcCC
Q 026482 79 KVPSLE--HNGKIIGESLDLINYVDSNFE 105 (238)
Q Consensus 79 ~vP~L~--~~g~~l~eS~aI~~yL~~~~~ 105 (238)
..|-|. -+|..++|+.||++||..-|.
T Consensus 35 ~~~~L~~~~~gF~L~e~NAIvrYl~nDF~ 63 (122)
T PF09635_consen 35 SGPLLKDKKSGFELFEPNAIVRYLANDFE 63 (122)
T ss_dssp -S--EEE-S--S----HHHHHHHHTT--T
T ss_pred ccceeeecCCceEEecccHHHHHHHhhcC
Confidence 356774 477899999999999988875
No 197
>PHA03075 glutaredoxin-like protein; Provisional
Probab=62.10 E-value=9.1 Score=27.16 Aligned_cols=36 Identities=11% Similarity=0.115 Sum_probs=28.9
Q ss_pred CCCeEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccC
Q 026482 26 DGTTRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDL 63 (238)
Q Consensus 26 ~~~~~Ly~~~~sp~~~~v~~~L~~~gipy~~~~~~v~~ 63 (238)
+.++.|+|-|.|+-|.-+.-+|.+..- +|++..|+.
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~led--eY~ilrVNI 37 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELED--EYDILRVNI 37 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhc--cccEEEEEe
Confidence 567999999999999999999866444 577777665
No 198
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=61.70 E-value=27 Score=24.31 Aligned_cols=62 Identities=15% Similarity=0.167 Sum_probs=36.6
Q ss_pred CeEEEeeCCCchHHHHHHHHHhc--CCCCceeEEeccCCCChhhhhhhcCCCCCCCeEE--eCCeEeech
Q 026482 28 TTRLYMAYTCPFAQRVWITRNYK--GLQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLE--HNGKIIGES 93 (238)
Q Consensus 28 ~~~Ly~~~~sp~~~~v~~~L~~~--gipy~~~~~~v~~~~~~~~~~~~~~p~~~vP~L~--~~g~~l~eS 93 (238)
.+..|+.++|+.|+.+.-.++.. ..+ .+.++.+|.... .+.. ..-...+|+++ .+|..+...
T Consensus 27 vvv~F~a~~c~~C~~l~~~l~~la~~~~-~v~f~~vd~~~~--~l~~-~~~i~~~Pt~~~f~~G~~v~~~ 92 (113)
T cd02957 27 VVVHFYEPGFPRCKILDSHLEELAAKYP-ETKFVKINAEKA--FLVN-YLDIKVLPTLLVYKNGELIDNI 92 (113)
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCC-CcEEEEEEchhh--HHHH-hcCCCcCCEEEEEECCEEEEEE
Confidence 35567789999998766555421 122 245566666443 3322 22346799997 677665443
No 199
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=61.57 E-value=44 Score=25.54 Aligned_cols=61 Identities=11% Similarity=0.127 Sum_probs=36.5
Q ss_pred eEEEeeCCCchHHHHHHHHH--hcCCCCceeEEeccCCCChhhhhhhcCCCCCCCeEE--eCCeEeech
Q 026482 29 TRLYMAYTCPFAQRVWITRN--YKGLQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLE--HNGKIIGES 93 (238)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~L~--~~gipy~~~~~~v~~~~~~~~~~~~~~p~~~vP~L~--~~g~~l~eS 93 (238)
+..++.++|+.|+.+.-.|. ...-| .+.++.|+.... .+.. ..+...+|+|+ -+|..+..-
T Consensus 87 VV~Fya~wc~~Ck~m~~~l~~LA~~~~-~vkF~kVd~d~~--~l~~-~f~v~~vPTlllyk~G~~v~~~ 151 (175)
T cd02987 87 VVHIYEPGIPGCAALNSSLLCLAAEYP-AVKFCKIRASAT--GASD-EFDTDALPALLVYKGGELIGNF 151 (175)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCC-CeEEEEEeccch--hhHH-hCCCCCCCEEEEEECCEEEEEE
Confidence 45566789999986543332 11223 467777776543 2322 34567899997 577665543
No 200
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=61.17 E-value=33 Score=24.52 Aligned_cols=62 Identities=18% Similarity=0.274 Sum_probs=32.6
Q ss_pred eEEEee-------CCCchHHHHHHHHHhc--CCCCceeEEeccCCCCh------hhhhhhcCCC-C-CCCeEE--eCCeE
Q 026482 29 TRLYMA-------YTCPFAQRVWITRNYK--GLQDEIKLVAFDLQDKP------AWYKEKVYPS-N-KVPSLE--HNGKI 89 (238)
Q Consensus 29 ~~Ly~~-------~~sp~~~~v~~~L~~~--gipy~~~~~~v~~~~~~------~~~~~~~~p~-~-~vP~L~--~~g~~ 89 (238)
+..|+. +|||.|+.+.-.++.. ..+..+.++.|+..+.+ ..+. .... . .+|++. .++..
T Consensus 25 vV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~--~~~~I~~~iPT~~~~~~~~~ 102 (119)
T cd02952 25 FILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFR--TDPKLTTGVPTLLRWKTPQR 102 (119)
T ss_pred EEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhH--hccCcccCCCEEEEEcCCce
Confidence 445666 6999999765444221 11213566667765432 2222 1222 3 699998 44444
Q ss_pred eec
Q 026482 90 IGE 92 (238)
Q Consensus 90 l~e 92 (238)
+.|
T Consensus 103 l~~ 105 (119)
T cd02952 103 LVE 105 (119)
T ss_pred ecc
Confidence 443
No 201
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=61.08 E-value=37 Score=23.88 Aligned_cols=18 Identities=17% Similarity=0.436 Sum_probs=14.0
Q ss_pred CCeEEEeeCCCchHHHHH
Q 026482 27 GTTRLYMAYTCPFAQRVW 44 (238)
Q Consensus 27 ~~~~Ly~~~~sp~~~~v~ 44 (238)
..+..|+.++|++|++..
T Consensus 16 ~vlv~f~a~wC~~C~~~~ 33 (125)
T cd02951 16 PLLLLFSQPGCPYCDKLK 33 (125)
T ss_pred cEEEEEeCCCCHHHHHHH
Confidence 346677789999999865
No 202
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=58.57 E-value=24 Score=24.31 Aligned_cols=55 Identities=22% Similarity=0.343 Sum_probs=31.8
Q ss_pred CCeEEEeeCCCchHHHHHHHHHh-----cCCCCceeEEeccCCCC-hhhhhhhcCCCCCCCeEE
Q 026482 27 GTTRLYMAYTCPFAQRVWITRNY-----KGLQDEIKLVAFDLQDK-PAWYKEKVYPSNKVPSLE 84 (238)
Q Consensus 27 ~~~~Ly~~~~sp~~~~v~~~L~~-----~gipy~~~~~~v~~~~~-~~~~~~~~~p~~~vP~L~ 84 (238)
..+..|+.++||.|++..-.+.. .+. .+.+..++.... ...... ......+|++.
T Consensus 23 ~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~--~~~~~~vd~d~~~~~~~~~-~~~v~~~Pti~ 83 (109)
T cd02993 23 STLVVLYAPWCPFCQAMEASYEELAEKLAGS--NVKVAKFNADGEQREFAKE-ELQLKSFPTIL 83 (109)
T ss_pred CEEEEEECCCCHHHHHHhHHHHHHHHHhccC--CeEEEEEECCccchhhHHh-hcCCCcCCEEE
Confidence 45778888999999876544432 222 255555555432 222211 23566799886
No 203
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=56.45 E-value=67 Score=25.78 Aligned_cols=77 Identities=14% Similarity=0.217 Sum_probs=44.0
Q ss_pred CCeEEEeeCCCchHHHHHHHHHhc--CCCCceeEEeccCCCChhhhhhhcCCCCCCCeEE--eCCeEe------echHHH
Q 026482 27 GTTRLYMAYTCPFAQRVWITRNYK--GLQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLE--HNGKII------GESLDL 96 (238)
Q Consensus 27 ~~~~Ly~~~~sp~~~~v~~~L~~~--gipy~~~~~~v~~~~~~~~~~~~~~p~~~vP~L~--~~g~~l------~eS~aI 96 (238)
..+..|+.++|+.|+...-.++.. ..+-.+.+..+|....++... ......+|++. .+|..+ .....|
T Consensus 54 ~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~--~~~I~~~PTl~~f~~G~~v~~~~G~~s~e~L 131 (224)
T PTZ00443 54 PWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAK--RFAIKGYPTLLLFDKGKMYQYEGGDRSTEKL 131 (224)
T ss_pred CEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHHH--HcCCCcCCEEEEEECCEEEEeeCCCCCHHHH
Confidence 346678889999998754443321 111125666666655444332 22356789887 666543 234566
Q ss_pred HHHHHhcCC
Q 026482 97 INYVDSNFE 105 (238)
Q Consensus 97 ~~yL~~~~~ 105 (238)
.+++.+.+.
T Consensus 132 ~~fi~~~~~ 140 (224)
T PTZ00443 132 AAFALGDFK 140 (224)
T ss_pred HHHHHHHHH
Confidence 666666653
No 204
>COG5515 Uncharacterized conserved small protein [Function unknown]
Probab=55.49 E-value=13 Score=23.08 Aligned_cols=22 Identities=27% Similarity=0.309 Sum_probs=17.2
Q ss_pred CeEEEee----CCCchHHHHHHHHHh
Q 026482 28 TTRLYMA----YTCPFAQRVWITRNY 49 (238)
Q Consensus 28 ~~~Ly~~----~~sp~~~~v~~~L~~ 49 (238)
+++||.+ ..|.||.||-.+|..
T Consensus 2 ~mKLYRfiTGpDDssFChrvta~LN~ 27 (70)
T COG5515 2 KMKLYRFITGPDDSSFCHRVTAALNK 27 (70)
T ss_pred cceeeEeecCCchHHHHHHHHHHHhC
Confidence 5777776 358899999998874
No 205
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=54.86 E-value=29 Score=23.47 Aligned_cols=56 Identities=13% Similarity=0.050 Sum_probs=32.9
Q ss_pred CCeEEEeeCCCchHHHHHHHHHhcCC--CCceeEEeccCCCChhhhhhhcCCCCCCCeEE
Q 026482 27 GTTRLYMAYTCPFAQRVWITRNYKGL--QDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLE 84 (238)
Q Consensus 27 ~~~~Ly~~~~sp~~~~v~~~L~~~gi--py~~~~~~v~~~~~~~~~~~~~~p~~~vP~L~ 84 (238)
..+..|+.++|+.|++..-.+....- .-.+.+..+|....++... ......+|++.
T Consensus 21 ~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~--~~~i~~~Pt~~ 78 (104)
T cd03004 21 PWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQ--QANIRAYPTIR 78 (104)
T ss_pred eEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHH--HcCCCcccEEE
Confidence 34667888999999875444432111 1125666677665554332 23456789887
No 206
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=54.05 E-value=31 Score=22.97 Aligned_cols=58 Identities=17% Similarity=0.267 Sum_probs=33.8
Q ss_pred CeEEEeeCCCchHHHHHHHH-----HhcC-CCCceeEEeccCCCChhhhhhhcCCCCCCCeEE--eCCe
Q 026482 28 TTRLYMAYTCPFAQRVWITR-----NYKG-LQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLE--HNGK 88 (238)
Q Consensus 28 ~~~Ly~~~~sp~~~~v~~~L-----~~~g-ipy~~~~~~v~~~~~~~~~~~~~~p~~~vP~L~--~~g~ 88 (238)
.+..|+.++|+.|+...-.+ ...+ -+ .+.+..++....+..... . ....+|++. .+|.
T Consensus 19 ~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~-~-~v~~~Pt~~~~~~g~ 84 (102)
T cd03005 19 HFVKFFAPWCGHCKRLAPTWEQLAKKFNNENP-SVKIAKVDCTQHRELCSE-F-QVRGYPTLLLFKDGE 84 (102)
T ss_pred EEEEEECCCCHHHHHhCHHHHHHHHHHhccCC-cEEEEEEECCCChhhHhh-c-CCCcCCEEEEEeCCC
Confidence 46677788999998754333 2333 11 366677776544443322 3 356789886 4554
No 207
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=53.72 E-value=26 Score=23.27 Aligned_cols=55 Identities=15% Similarity=0.168 Sum_probs=32.3
Q ss_pred CCeEEEeeCCCchHHHHHHHHH-----hcCCCCceeEEeccCCCChhhhhhhcCCCCCCCeEE
Q 026482 27 GTTRLYMAYTCPFAQRVWITRN-----YKGLQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLE 84 (238)
Q Consensus 27 ~~~~Ly~~~~sp~~~~v~~~L~-----~~gipy~~~~~~v~~~~~~~~~~~~~~p~~~vP~L~ 84 (238)
..+.+|+.++|+.|+...-.+. ..+-+ .+.+..++....+..... . ....+|++.
T Consensus 15 ~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~-~-~i~~~P~~~ 74 (102)
T TIGR01126 15 DVLVEFYAPWCGHCKNLAPEYEKLAKELKGDP-DIVLAKVDATAEKDLASR-F-GVSGFPTIK 74 (102)
T ss_pred cEEEEEECCCCHHHHhhChHHHHHHHHhccCC-ceEEEEEEccchHHHHHh-C-CCCcCCEEE
Confidence 3477888999999987544332 22211 256666665444443322 3 356799885
No 208
>TIGR02681 phage_pRha phage regulatory protein, rha family. Members of this protein family are found in temperate phage and bacterial prophage regions. Members include the product of the rha gene of the lambdoid phage phi-80, a late operon gene. The presence of this gene interferes with infection of bacterial strains that lack integration host factor (IHF), which regulates the rha gene. It is suggested that pRha is a phage regulatory protein.
Probab=52.56 E-value=17 Score=25.49 Aligned_cols=26 Identities=12% Similarity=0.363 Sum_probs=21.8
Q ss_pred CCeEE-eCCeEeechHHHHHHHHhcCC
Q 026482 80 VPSLE-HNGKIIGESLDLINYVDSNFE 105 (238)
Q Consensus 80 vP~L~-~~g~~l~eS~aI~~yL~~~~~ 105 (238)
+|.+. .+|.++++|..|+++..+++.
T Consensus 2 ~~~v~~~~~~~~ttS~~IAe~fgK~H~ 28 (108)
T TIGR02681 2 FPKVFTKRNQVVTDSLTMAQMFGKRHD 28 (108)
T ss_pred CceEEEECCEEEEeHHHHHHHHCcchH
Confidence 46565 799999999999999988874
No 209
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=52.11 E-value=43 Score=23.55 Aligned_cols=56 Identities=13% Similarity=-0.010 Sum_probs=32.6
Q ss_pred CeEEEeeCCCchHHHHHHHHHhcCC--CCceeEEeccCCCChhhhhhhcCCCCCCCeEE
Q 026482 28 TTRLYMAYTCPFAQRVWITRNYKGL--QDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLE 84 (238)
Q Consensus 28 ~~~Ly~~~~sp~~~~v~~~L~~~gi--py~~~~~~v~~~~~~~~~~~~~~p~~~vP~L~ 84 (238)
.+..|+.+||+.|+...-.+++..- .-.+.+..||....+..... ..-...+|+|.
T Consensus 32 vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~-~~~I~~~PTl~ 89 (113)
T cd03006 32 SLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRK-QKHFFYFPVIH 89 (113)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHH-hcCCcccCEEE
Confidence 3667888999999987665554321 11255666766544433211 12235689887
No 210
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=51.97 E-value=27 Score=28.47 Aligned_cols=24 Identities=13% Similarity=0.510 Sum_probs=18.5
Q ss_pred CCCCeEEEeeCCCchHHHHHHHHH
Q 026482 25 FDGTTRLYMAYTCPFAQRVWITRN 48 (238)
Q Consensus 25 ~~~~~~Ly~~~~sp~~~~v~~~L~ 48 (238)
.+.++.+|..+.||||++.+-.+.
T Consensus 117 ak~~I~vFtDp~CpyC~kl~~~l~ 140 (251)
T PRK11657 117 APRIVYVFADPNCPYCKQFWQQAR 140 (251)
T ss_pred CCeEEEEEECCCChhHHHHHHHHH
Confidence 344577778899999999887765
No 211
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=51.85 E-value=32 Score=22.96 Aligned_cols=59 Identities=19% Similarity=0.185 Sum_probs=31.6
Q ss_pred CeEEEeeCCCchHHHHHHHH----HhcCCCCceeEEeccCCC--ChhhhhhhcCCCCCCCeEE--eCCe
Q 026482 28 TTRLYMAYTCPFAQRVWITR----NYKGLQDEIKLVAFDLQD--KPAWYKEKVYPSNKVPSLE--HNGK 88 (238)
Q Consensus 28 ~~~Ly~~~~sp~~~~v~~~L----~~~gipy~~~~~~v~~~~--~~~~~~~~~~p~~~vP~L~--~~g~ 88 (238)
.+.+|+.++|+.|+...-.+ ....-...+.+..++... .+..... . ....+|+++ .+|.
T Consensus 20 ~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~-~-~i~~~Pt~~~~~~g~ 86 (104)
T cd02997 20 VLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEE-Y-NVKGFPTFKYFENGK 86 (104)
T ss_pred EEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHh-C-CCccccEEEEEeCCC
Confidence 36678889999998764222 121101124555555543 4443322 2 345789887 4454
No 212
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=51.08 E-value=73 Score=22.48 Aligned_cols=64 Identities=14% Similarity=0.109 Sum_probs=40.0
Q ss_pred CCeEEEeeCC--CchHHHHHHHHHhcCCCC--ceeEEeccCCCChhhhhhhcCCCCCCCeEE--eCCeEeec
Q 026482 27 GTTRLYMAYT--CPFAQRVWITRNYKGLQD--EIKLVAFDLQDKPAWYKEKVYPSNKVPSLE--HNGKIIGE 92 (238)
Q Consensus 27 ~~~~Ly~~~~--sp~~~~v~~~L~~~gipy--~~~~~~v~~~~~~~~~~~~~~p~~~vP~L~--~~g~~l~e 92 (238)
..+..|+..+ ||-|+.+.-+|...--.| .+.++.++..+.++ +.. ..-...+|+|+ .+|..+..
T Consensus 29 ~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~-la~-~f~V~sIPTli~fkdGk~v~~ 98 (111)
T cd02965 29 DLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQA-LAA-RFGVLRTPALLFFRDGRYVGV 98 (111)
T ss_pred CEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHH-HHH-HcCCCcCCEEEEEECCEEEEE
Confidence 3466677774 999998776665332211 25667777766663 332 33457799998 67776543
No 213
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=50.63 E-value=68 Score=21.76 Aligned_cols=61 Identities=8% Similarity=0.028 Sum_probs=34.2
Q ss_pred CeEEEeeCCCchHHHHHHHHHhc--CCCCceeEEeccCCCCh--hhhhhhcCCCCCCCeEE--eCCeEe
Q 026482 28 TTRLYMAYTCPFAQRVWITRNYK--GLQDEIKLVAFDLQDKP--AWYKEKVYPSNKVPSLE--HNGKII 90 (238)
Q Consensus 28 ~~~Ly~~~~sp~~~~v~~~L~~~--gipy~~~~~~v~~~~~~--~~~~~~~~p~~~vP~L~--~~g~~l 90 (238)
.+..|+.++|+.|+...=.+... ..+ ++.+..++....+ ..+.. ......+|+++ .+|..+
T Consensus 18 vvv~F~a~wC~~C~~~~p~l~~la~~~~-~v~~~~vd~d~~~~~~~l~~-~~~V~~~Pt~~~~~~G~~v 84 (103)
T cd02985 18 VVLEFALKHSGPSVKIYPTMVKLSRTCN-DVVFLLVNGDENDSTMELCR-REKIIEVPHFLFYKDGEKI 84 (103)
T ss_pred EEEEEECCCCHhHHHHhHHHHHHHHHCC-CCEEEEEECCCChHHHHHHH-HcCCCcCCEEEEEeCCeEE
Confidence 35667778999998654444321 112 3566667665443 12332 23456689887 466543
No 214
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=50.61 E-value=43 Score=21.76 Aligned_cols=56 Identities=11% Similarity=0.125 Sum_probs=34.5
Q ss_pred CCeEEEeeCCCchHHHHHHHHHhc--CC--CCceeEEeccCCCChhhhhhhcCCCCCCCeEE
Q 026482 27 GTTRLYMAYTCPFAQRVWITRNYK--GL--QDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLE 84 (238)
Q Consensus 27 ~~~~Ly~~~~sp~~~~v~~~L~~~--gi--py~~~~~~v~~~~~~~~~~~~~~p~~~vP~L~ 84 (238)
..+.+|+.++|++|+...-.+... .+ .-.+.+..++....+.... .-....+|++.
T Consensus 17 ~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~i~~~Pt~~ 76 (101)
T cd02961 17 DVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCS--EYGVRGYPTIK 76 (101)
T ss_pred cEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHH--hCCCCCCCEEE
Confidence 357788889999998866655432 12 1146777776655444332 22346789886
No 215
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=50.44 E-value=56 Score=25.73 Aligned_cols=58 Identities=14% Similarity=0.226 Sum_probs=35.2
Q ss_pred eEEEee---CCCchHHHHHHHHHhcCC--C-CceeEEeccCCCChhhhhhhcCCCCCCCeEE--eCCe
Q 026482 29 TRLYMA---YTCPFAQRVWITRNYKGL--Q-DEIKLVAFDLQDKPAWYKEKVYPSNKVPSLE--HNGK 88 (238)
Q Consensus 29 ~~Ly~~---~~sp~~~~v~~~L~~~gi--p-y~~~~~~v~~~~~~~~~~~~~~p~~~vP~L~--~~g~ 88 (238)
+.+|.. +|||.|+.+.-++++..- + .++.++.++....++.-. ..-...+|++. .+|.
T Consensus 23 i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~--~~~V~~~Pt~~~f~~g~ 88 (215)
T TIGR02187 23 IVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAE--KYGVERVPTTIILEEGK 88 (215)
T ss_pred EEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHH--HcCCCccCEEEEEeCCe
Confidence 778877 899999987766654321 1 134566666544443332 23457799997 4554
No 216
>PF13728 TraF: F plasmid transfer operon protein
Probab=49.89 E-value=34 Score=27.19 Aligned_cols=32 Identities=19% Similarity=0.417 Sum_probs=20.3
Q ss_pred eEEEeeCCCchHHH----HHHHHHhcCCCCceeEEecc
Q 026482 29 TRLYMAYTCPFAQR----VWITRNYKGLQDEIKLVAFD 62 (238)
Q Consensus 29 ~~Ly~~~~sp~~~~----v~~~L~~~gipy~~~~~~v~ 62 (238)
+.+++...||||+. ++.+....|+. +..+.+|
T Consensus 124 L~~F~~~~C~~C~~~~pil~~~~~~yg~~--v~~vs~D 159 (215)
T PF13728_consen 124 LFFFYRSDCPYCQQQAPILQQFADKYGFS--VIPVSLD 159 (215)
T ss_pred EEEEEcCCCchhHHHHHHHHHHHHHhCCE--EEEEecC
Confidence 66777789999976 45555555663 4444444
No 217
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=47.48 E-value=96 Score=22.23 Aligned_cols=63 Identities=11% Similarity=-0.044 Sum_probs=36.4
Q ss_pred eEEEeeCCCchHHHHHH-HHH------hcCCCCceeEEeccCCCChhhhhh------hcCCCCCCCeEE---eCCeEeec
Q 026482 29 TRLYMAYTCPFAQRVWI-TRN------YKGLQDEIKLVAFDLQDKPAWYKE------KVYPSNKVPSLE---HNGKIIGE 92 (238)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~-~L~------~~gipy~~~~~~v~~~~~~~~~~~------~~~p~~~vP~L~---~~g~~l~e 92 (238)
+..++..+|++|++..- .+. ..+- ++..+.+|....++.-.. .....+.+|+++ .+|..+..
T Consensus 19 ll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~--~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl~~~G~~~~~ 96 (124)
T cd02955 19 FLSIGYSTCHWCHVMEHESFEDEEVAAILNE--NFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVFLTPDLKPFFG 96 (124)
T ss_pred EEEEccCCCHhHHHHHHHccCCHHHHHHHhC--CEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEEECCCCCEEee
Confidence 44466689999987632 222 1122 367777777555432110 012356789987 46778776
Q ss_pred h
Q 026482 93 S 93 (238)
Q Consensus 93 S 93 (238)
+
T Consensus 97 ~ 97 (124)
T cd02955 97 G 97 (124)
T ss_pred e
Confidence 6
No 218
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=46.19 E-value=40 Score=27.11 Aligned_cols=26 Identities=8% Similarity=0.183 Sum_probs=19.7
Q ss_pred CCCCeEEEeeCCCchHHHHHHHHHhc
Q 026482 25 FDGTTRLYMAYTCPFAQRVWITRNYK 50 (238)
Q Consensus 25 ~~~~~~Ly~~~~sp~~~~v~~~L~~~ 50 (238)
.+.++.+|..+.||||++.+--+...
T Consensus 107 ~k~~I~vFtDp~CpyCkkl~~~l~~~ 132 (232)
T PRK10877 107 EKHVITVFTDITCGYCHKLHEQMKDY 132 (232)
T ss_pred CCEEEEEEECCCChHHHHHHHHHHHH
Confidence 34457788889999999988776653
No 219
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=44.78 E-value=52 Score=21.85 Aligned_cols=54 Identities=13% Similarity=0.182 Sum_probs=32.6
Q ss_pred CeEEEeeCCCchHHHHHHHHHh----cC-CCCceeEEeccCCC-ChhhhhhhcCCCCCCCeEE
Q 026482 28 TTRLYMAYTCPFAQRVWITRNY----KG-LQDEIKLVAFDLQD-KPAWYKEKVYPSNKVPSLE 84 (238)
Q Consensus 28 ~~~Ly~~~~sp~~~~v~~~L~~----~g-ipy~~~~~~v~~~~-~~~~~~~~~~p~~~vP~L~ 84 (238)
.+..|+.++|+.|+...-.+.. .+ .+ .+.+..++... .+..... -....+|+++
T Consensus 21 ~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~-~~~~~~id~~~~~~~~~~~--~~i~~~P~~~ 80 (105)
T cd02998 21 VLVEFYAPWCGHCKNLAPEYEKLAAVFANED-DVVIAKVDADEANKDLAKK--YGVSGFPTLK 80 (105)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHhCCCC-CEEEEEEECCCcchhhHHh--CCCCCcCEEE
Confidence 4777888999999865433322 12 22 36777777655 4444332 2456789887
No 220
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=44.53 E-value=22 Score=24.38 Aligned_cols=21 Identities=10% Similarity=0.251 Sum_probs=13.9
Q ss_pred CeEEEeeCCCchHHHHHHHHH
Q 026482 28 TTRLYMAYTCPFAQRVWITRN 48 (238)
Q Consensus 28 ~~~Ly~~~~sp~~~~v~~~L~ 48 (238)
.+.+|+.++||||++..-.+.
T Consensus 8 ~v~~F~~~~C~~C~~~~~~~~ 28 (112)
T PF13098_consen 8 IVVVFTDPWCPYCKKLEKELF 28 (112)
T ss_dssp EEEEEE-TT-HHHHHHHHHHH
T ss_pred EEEEEECCCCHHHHHHHHHHH
Confidence 356677799999998765554
No 221
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=44.52 E-value=69 Score=21.62 Aligned_cols=59 Identities=17% Similarity=0.196 Sum_probs=32.9
Q ss_pred CeEEEeeCCCchHHHHHHHHHhc--CCCCceeEEeccCCC--ChhhhhhhcCCCCCCCeEE--eCCe
Q 026482 28 TTRLYMAYTCPFAQRVWITRNYK--GLQDEIKLVAFDLQD--KPAWYKEKVYPSNKVPSLE--HNGK 88 (238)
Q Consensus 28 ~~~Ly~~~~sp~~~~v~~~L~~~--gipy~~~~~~v~~~~--~~~~~~~~~~p~~~vP~L~--~~g~ 88 (238)
.+..|+.++|+.|+...-.+... .....+.+..++... .++... ......+|++. .+|.
T Consensus 21 ~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~--~~~i~~~Pt~~~~~~~~ 85 (109)
T cd03002 21 TLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCG--KYGVQGFPTLKVFRPPK 85 (109)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHH--HcCCCcCCEEEEEeCCC
Confidence 46778889999998754333321 112125555566544 333332 23456789887 4443
No 222
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=44.04 E-value=85 Score=20.80 Aligned_cols=55 Identities=15% Similarity=0.119 Sum_probs=31.6
Q ss_pred CeEEEeeCCCchHHHHHHHHHh--cCCCCceeEEeccCCCChhhhhhhcCCCCCCCeEE
Q 026482 28 TTRLYMAYTCPFAQRVWITRNY--KGLQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLE 84 (238)
Q Consensus 28 ~~~Ly~~~~sp~~~~v~~~L~~--~gipy~~~~~~v~~~~~~~~~~~~~~p~~~vP~L~ 84 (238)
.+.+++.++|+.|+...-.+.. ...+-.+.+..++....++.... .+ ...+|++.
T Consensus 21 vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~-~~-i~~~P~~~ 77 (103)
T cd03001 21 WLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQ-YG-VRGFPTIK 77 (103)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHH-CC-CCccCEEE
Confidence 4667778899999875433321 11111366666666555544433 43 35689886
No 223
>KOG1668 consensus Elongation factor 1 beta/delta chain [Transcription]
Probab=43.92 E-value=17 Score=29.12 Aligned_cols=58 Identities=14% Similarity=0.191 Sum_probs=43.1
Q ss_pred hhHHHHHHHHhhccCCCCcccCC-ccHHHHHHhhHHHHHHHHhhhcCCCcccCCChhHHHHHHHHhcCcchh
Q 026482 147 GPAFDFLEKALDKFDDGPFFLGQ-FSLVDIAYIPFVDGYQMILSEGFKYDATIGRPKLAAWIEELNKMDVYK 217 (238)
Q Consensus 147 ~~~l~~le~~L~~~~~~~~l~G~-~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~ 217 (238)
.+.+..++..|. +++|..|. ++-+|+.+|..+. .-+....+++..+|+..+.+.-...
T Consensus 10 ~~glk~l~~sLA---~ks~~~g~~~s~edv~vf~al~----------~ep~s~~~v~~~~w~~~l~a~~~~~ 68 (231)
T KOG1668|consen 10 PAGLKKLNKSLA---EKSYIEGYQLSKEDVVVFAALG----------VEPQSARLVNAERWYSKLEALLRLL 68 (231)
T ss_pred hhhhhhhhHhhh---cccCCCCCCcccccceeehhcc----------cCcchhhhhHHHHHHHHHHHHHHHH
Confidence 567788999999 78999999 9999999988772 1111345678888887777655443
No 224
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=43.71 E-value=76 Score=21.14 Aligned_cols=55 Identities=15% Similarity=0.159 Sum_probs=32.2
Q ss_pred CeEEEeeCCCchHHHHHHHHHhcC--C-CCceeEEeccCCCChhhhhhhcCCCCCCCeEE
Q 026482 28 TTRLYMAYTCPFAQRVWITRNYKG--L-QDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLE 84 (238)
Q Consensus 28 ~~~Ly~~~~sp~~~~v~~~L~~~g--i-py~~~~~~v~~~~~~~~~~~~~~p~~~vP~L~ 84 (238)
.+..|+.++|+.|+...-.+.... . ...+.+..++....+.... ......+|++.
T Consensus 19 ~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~--~~~i~~~Pt~~ 76 (101)
T cd02994 19 WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSG--RFFVTALPTIY 76 (101)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHH--HcCCcccCEEE
Confidence 466777899999987554433221 1 1135666666655544332 23457789887
No 225
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=43.57 E-value=63 Score=21.96 Aligned_cols=59 Identities=20% Similarity=0.236 Sum_probs=34.7
Q ss_pred CeEEEeeCCCchHHHHHHHHHhc-----C-CC--CceeEEeccCCCChhhhhhhcCCCCCCCeEE--eCCe
Q 026482 28 TTRLYMAYTCPFAQRVWITRNYK-----G-LQ--DEIKLVAFDLQDKPAWYKEKVYPSNKVPSLE--HNGK 88 (238)
Q Consensus 28 ~~~Ly~~~~sp~~~~v~~~L~~~-----g-ip--y~~~~~~v~~~~~~~~~~~~~~p~~~vP~L~--~~g~ 88 (238)
.+..|+.++|+.|+...-.+... + .+ ..+.+..+|....++... ......+|++. .+|.
T Consensus 21 vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~--~~~v~~~Ptl~~~~~g~ 89 (108)
T cd02996 21 VLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIAD--RYRINKYPTLKLFRNGM 89 (108)
T ss_pred EEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHH--hCCCCcCCEEEEEeCCc
Confidence 36678889999999766555321 1 11 125666666655544332 23456789887 4554
No 226
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=43.50 E-value=50 Score=25.56 Aligned_cols=25 Identities=8% Similarity=0.203 Sum_probs=19.8
Q ss_pred CCCCeEEEeeCCCchHHHHHHHHHh
Q 026482 25 FDGTTRLYMAYTCPFAQRVWITRNY 49 (238)
Q Consensus 25 ~~~~~~Ly~~~~sp~~~~v~~~L~~ 49 (238)
.+.++.+|..+.||||++..-.+..
T Consensus 77 ~~~~i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 77 GKRVVYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred CCEEEEEEECCCCccHHHHHHHHhh
Confidence 3445777888999999999888875
No 227
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=43.25 E-value=52 Score=26.42 Aligned_cols=28 Identities=11% Similarity=0.150 Sum_probs=19.3
Q ss_pred CCCCeEEEeeCCCchHH----HHHHHHHhcCC
Q 026482 25 FDGTTRLYMAYTCPFAQ----RVWITRNYKGL 52 (238)
Q Consensus 25 ~~~~~~Ly~~~~sp~~~----~v~~~L~~~gi 52 (238)
++.++.+|.-..||||. +..-++...+-
T Consensus 4 ~~i~I~v~sD~vCPwC~ig~~rL~ka~~~~~~ 35 (225)
T COG2761 4 MKIEIDVFSDVVCPWCYIGKRRLEKALAEYPQ 35 (225)
T ss_pred ceEEEEEEeCCcCchhhcCHHHHHHHHHhcCc
Confidence 55667788888999995 45555555554
No 228
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=41.97 E-value=64 Score=23.61 Aligned_cols=60 Identities=13% Similarity=0.185 Sum_probs=30.6
Q ss_pred eEEEeeCCCchHHHHHHHHHhcC--CCCceeEEeccCCCC--hhhhhhhcCCCCCCCeEE--e-CCeEe
Q 026482 29 TRLYMAYTCPFAQRVWITRNYKG--LQDEIKLVAFDLQDK--PAWYKEKVYPSNKVPSLE--H-NGKII 90 (238)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~L~~~g--ipy~~~~~~v~~~~~--~~~~~~~~~p~~~vP~L~--~-~g~~l 90 (238)
+..|+.+||+.|+...-.+.... ..-.+.++.++.... .+... ......+|+++ + +|..+
T Consensus 24 vV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~--~~~V~~iPt~v~~~~~G~~v 90 (142)
T cd02950 24 LVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEID--RYRVDGIPHFVFLDREGNEE 90 (142)
T ss_pred EEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHH--HcCCCCCCEEEEECCCCCEE
Confidence 55666789999987654443211 111244454444322 22222 22345689887 3 56544
No 229
>PTZ00102 disulphide isomerase; Provisional
Probab=40.88 E-value=1.9e+02 Score=25.57 Aligned_cols=76 Identities=14% Similarity=0.222 Sum_probs=45.4
Q ss_pred CeEEEeeCCCchHHHHHHHHH-----hcCCCCceeEEeccCCCChhhhhhhcCCCCCCCeEE--eCCeEe-----echHH
Q 026482 28 TTRLYMAYTCPFAQRVWITRN-----YKGLQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLE--HNGKII-----GESLD 95 (238)
Q Consensus 28 ~~~Ly~~~~sp~~~~v~~~L~-----~~gipy~~~~~~v~~~~~~~~~~~~~~p~~~vP~L~--~~g~~l-----~eS~a 95 (238)
.+..|+.++|++|++..=.+. ..+...++.+..++.....+...+ . .....|++. .+|..+ .....
T Consensus 52 ~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~-~-~i~~~Pt~~~~~~g~~~~y~g~~~~~~ 129 (477)
T PTZ00102 52 VLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQE-F-GVRGYPTIKFFNKGNPVNYSGGRTADG 129 (477)
T ss_pred EEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHh-c-CCCcccEEEEEECCceEEecCCCCHHH
Confidence 477788899999987642221 122111466777776555544332 3 345689886 455432 34677
Q ss_pred HHHHHHhcCC
Q 026482 96 LINYVDSNFE 105 (238)
Q Consensus 96 I~~yL~~~~~ 105 (238)
|.+|+.+..+
T Consensus 130 l~~~l~~~~~ 139 (477)
T PTZ00102 130 IVSWIKKLTG 139 (477)
T ss_pred HHHHHHHhhC
Confidence 8899988754
No 230
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=39.18 E-value=59 Score=22.07 Aligned_cols=54 Identities=24% Similarity=0.349 Sum_probs=29.4
Q ss_pred CeEEEeeCCCchHHHHHHHHHhcC--CCCceeEEeccCC-CChhhhhhhcCCCCCCCeEE
Q 026482 28 TTRLYMAYTCPFAQRVWITRNYKG--LQDEIKLVAFDLQ-DKPAWYKEKVYPSNKVPSLE 84 (238)
Q Consensus 28 ~~~Ly~~~~sp~~~~v~~~L~~~g--ipy~~~~~~v~~~-~~~~~~~~~~~p~~~vP~L~ 84 (238)
.+..|+.++|+.|+...-.++... .+ .+.+..++.. ..+.... .-....+|++.
T Consensus 21 vlV~F~a~WC~~C~~~~p~l~~la~~~~-~~~~~~vd~~~~~~~l~~--~~~V~~~PT~~ 77 (100)
T cd02999 21 TAVLFYASWCPFSASFRPHFNALSSMFP-QIRHLAIEESSIKPSLLS--RYGVVGFPTIL 77 (100)
T ss_pred EEEEEECCCCHHHHhHhHHHHHHHHHhc-cCceEEEECCCCCHHHHH--hcCCeecCEEE
Confidence 466777789999987664443221 11 2334455554 2333222 22345689886
No 231
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=38.22 E-value=78 Score=20.45 Aligned_cols=54 Identities=20% Similarity=0.172 Sum_probs=31.0
Q ss_pred CeEEEeeCCCchHHH----HHHHHHhcCCCCceeEEeccCCCChhhhhhhcCCCCCCCeEE
Q 026482 28 TTRLYMAYTCPFAQR----VWITRNYKGLQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLE 84 (238)
Q Consensus 28 ~~~Ly~~~~sp~~~~----v~~~L~~~gipy~~~~~~v~~~~~~~~~~~~~~p~~~vP~L~ 84 (238)
.++||....+|.|++ ++-+++..- ++.+++..+|...+|+.-. ....--+|+|+
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l-~~~~~LeVIDv~~~P~lAe--~~~ivAtPtLv 60 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELL-GGPYELEVIDVLKQPQLAE--EDKIVATPTLV 60 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhc-CCcEEEEEEEcccCHhHHh--hCCEEEechhh
Confidence 367888888888865 333444332 4456666666666664331 23334467776
No 232
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=38.18 E-value=80 Score=26.08 Aligned_cols=35 Identities=9% Similarity=0.179 Sum_probs=19.9
Q ss_pred eEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccC
Q 026482 29 TRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDL 63 (238)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~L~~~gipy~~~~~~v~~ 63 (238)
+..|+..+||+|+...-.|....-.|.++++.|+.
T Consensus 170 Lv~F~AswCp~C~~~~P~L~~la~~yg~~Vi~Vsv 204 (271)
T TIGR02740 170 LFFFFKSDCPYCHQQAPILQAFEDRYGIEVLPVSV 204 (271)
T ss_pred EEEEECCCCccHHHHhHHHHHHHHHcCcEEEEEeC
Confidence 44566678999987655444332223344555554
No 233
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=37.16 E-value=1.4e+02 Score=20.55 Aligned_cols=73 Identities=11% Similarity=0.215 Sum_probs=40.6
Q ss_pred EEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCCChhhhhh-hcCC---CCCCCeEEeCCe-EeechHHHHHHHHhcC
Q 026482 31 LYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQDKPAWYKE-KVYP---SNKVPSLEHNGK-IIGESLDLINYVDSNF 104 (238)
Q Consensus 31 Ly~~~~sp~~~~v~~~L~~~gipy~~~~~~v~~~~~~~~~~~-~~~p---~~~vP~L~~~g~-~l~eS~aI~~yL~~~~ 104 (238)
|++...||+|.+..-.+...+..-.++++++......+.+.. ++++ ...+-+ ..+|. ...++.|+.+-+....
T Consensus 1 v~YDg~C~lC~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~g~~~~~G~~A~~~l~~~~~ 78 (114)
T PF04134_consen 1 VFYDGDCPLCRREVRFLRRRDRGGRLRFVDIQSEPDQALLASYGISPEDADSRLHL-IDDGERVYRGSDAVLRLLRRLP 78 (114)
T ss_pred CEECCCCHhHHHHHHHHHhcCCCCCEEEEECCChhhhhHHHhcCcCHHHHcCeeEE-ecCCCEEEEcHHHHHHHHHHcC
Confidence 456778999988666666555422466666522111111100 1221 223333 55665 9999999999865543
No 234
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=36.93 E-value=58 Score=24.70 Aligned_cols=34 Identities=24% Similarity=0.486 Sum_probs=23.2
Q ss_pred CeEEEeeCCCchHHH----HHHHHHhc-CCCCceeEEeccC
Q 026482 28 TTRLYMAYTCPFAQR----VWITRNYK-GLQDEIKLVAFDL 63 (238)
Q Consensus 28 ~~~Ly~~~~sp~~~~----v~~~L~~~-gipy~~~~~~v~~ 63 (238)
++++|+...||||-. ++-++... ++ +++...+.+
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~--~i~~~p~~l 39 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDV--EIEWRPFPL 39 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTC--EEEEEEESS
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCC--cEEEecccc
Confidence 478999999999954 44455555 66 466666655
No 235
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=35.30 E-value=83 Score=24.48 Aligned_cols=59 Identities=15% Similarity=0.200 Sum_probs=34.6
Q ss_pred eEEEeeCCCchHHHHHHHHHhcC--CCCceeEEeccCCCChhhhhhhcCCCCCCCeEE--eCCeEeech
Q 026482 29 TRLYMAYTCPFAQRVWITRNYKG--LQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLE--HNGKIIGES 93 (238)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~L~~~g--ipy~~~~~~v~~~~~~~~~~~~~~p~~~vP~L~--~~g~~l~eS 93 (238)
+..++.++|+.|+.+.-.|...- -+ ++.++.++..... . ..+...+|+|. .+|..+..-
T Consensus 106 VV~Fya~wc~~C~~m~~~l~~LA~k~~-~vkFvkI~ad~~~----~-~~~i~~lPTlliyk~G~~v~~i 168 (192)
T cd02988 106 VVHLYKDGIPLCRLLNQHLSELARKFP-DTKFVKIISTQCI----P-NYPDKNLPTILVYRNGDIVKQF 168 (192)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCC-CCEEEEEEhHHhH----h-hCCCCCCCEEEEEECCEEEEEE
Confidence 44566789999987644443221 22 3566666654321 1 34667899998 577655443
No 236
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=35.14 E-value=43 Score=24.53 Aligned_cols=23 Identities=13% Similarity=0.288 Sum_probs=17.5
Q ss_pred CCCCeEEEeeCCCchHHHHHHHH
Q 026482 25 FDGTTRLYMAYTCPFAQRVWITR 47 (238)
Q Consensus 25 ~~~~~~Ly~~~~sp~~~~v~~~L 47 (238)
++.+++.|....||+|.+..-.+
T Consensus 12 a~~~v~~f~d~~Cp~C~~~~~~~ 34 (162)
T PF13462_consen 12 APITVTEFFDFQCPHCAKFHEEL 34 (162)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHH
T ss_pred CCeEEEEEECCCCHhHHHHHHHH
Confidence 55679999999999999865544
No 237
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=34.91 E-value=2.6e+02 Score=24.43 Aligned_cols=76 Identities=16% Similarity=0.194 Sum_probs=44.9
Q ss_pred CeEEEeeCCCchHHHHHHHHH-----hcCCCCceeEEeccCCCChhhhhhhcCCCCCCCeEE--eCCeE-------eech
Q 026482 28 TTRLYMAYTCPFAQRVWITRN-----YKGLQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLE--HNGKI-------IGES 93 (238)
Q Consensus 28 ~~~Ly~~~~sp~~~~v~~~L~-----~~gipy~~~~~~v~~~~~~~~~~~~~~p~~~vP~L~--~~g~~-------l~eS 93 (238)
.+.+|+.+||+.|++..-.+. ..+..-.+.+..++....++.... . ....+|++. .+|.. ..+.
T Consensus 21 ~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~-~-~i~~~Pt~~~~~~g~~~~~~~~g~~~~ 98 (462)
T TIGR01130 21 VLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQK-Y-GVSGYPTLKIFRNGEDSVSDYNGPRDA 98 (462)
T ss_pred EEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHh-C-CCccccEEEEEeCCccceeEecCCCCH
Confidence 467788899999987643222 222211366677776555443322 3 345688886 44443 1246
Q ss_pred HHHHHHHHhcCC
Q 026482 94 LDLINYVDSNFE 105 (238)
Q Consensus 94 ~aI~~yL~~~~~ 105 (238)
..|.+++.+..+
T Consensus 99 ~~l~~~i~~~~~ 110 (462)
T TIGR01130 99 DGIVKYMKKQSG 110 (462)
T ss_pred HHHHHHHHHhcC
Confidence 778888877654
No 238
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=34.88 E-value=1.4e+02 Score=20.08 Aligned_cols=52 Identities=13% Similarity=0.185 Sum_probs=29.2
Q ss_pred eEEEeeCCCchHHHHHHHHH-----hc--CCCCceeEEeccCCCChhhhhhhcCCCCCCCeEE
Q 026482 29 TRLYMAYTCPFAQRVWITRN-----YK--GLQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLE 84 (238)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~L~-----~~--gipy~~~~~~v~~~~~~~~~~~~~~p~~~vP~L~ 84 (238)
+..|+.++||.|++..-.+. .. +. .+.+..++....+.... ......+|++.
T Consensus 19 lv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~--~~~~~~vd~~~~~~~~~--~~~I~~~Pt~~ 77 (104)
T cd03000 19 LVDFYAPWCGHCKKLEPVWNEVGAELKSSGS--PVRVGKLDATAYSSIAS--EFGVRGYPTIK 77 (104)
T ss_pred EEEEECCCCHHHHhhChHHHHHHHHHHhcCC--cEEEEEEECccCHhHHh--hcCCccccEEE
Confidence 55677789999986543332 21 22 25555555544443332 22345689987
No 239
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=34.30 E-value=77 Score=28.39 Aligned_cols=67 Identities=15% Similarity=0.225 Sum_probs=40.9
Q ss_pred CCCchHHHHHHHHHhc--CCCCceeEEeccC--CCChhhhhhhcCCCCCCCeEEeCCeEeechHHHHHHHHhcCCCCCCC
Q 026482 35 YTCPFAQRVWITRNYK--GLQDEIKLVAFDL--QDKPAWYKEKVYPSNKVPSLEHNGKIIGESLDLINYVDSNFEGPSLL 110 (238)
Q Consensus 35 ~~sp~~~~v~~~L~~~--gipy~~~~~~v~~--~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~~~~~~~~l~ 110 (238)
..|||..|+.++..+. ++| +|.+..+-. ...++|+.. ++ ..+|-....|..|=+-|-++.+..-|+
T Consensus 2 ~~cp~ya~~ellad~l~~~l~-~f~~~ki~~~p~~w~~wl~~-~c--------~~~~w~~~~spiiwrel~~rggkg~l~ 71 (452)
T cd05295 2 ADCPYYAKAELLADYLQKNLP-DFRVHKIVKHPDEWEDWLQD-LC--------KKNGWSHKRSPIIWRELLDRGGKGLLL 71 (452)
T ss_pred CCCchhHHHHHHHHHHHhhCC-CceEEEccCChHHHHHHHHH-HH--------HhcCCccCCCCeeHHHHHhcCCCceEe
Confidence 4799999999999875 688 688877644 234566654 32 123444445555555555555444444
Q ss_pred C
Q 026482 111 P 111 (238)
Q Consensus 111 p 111 (238)
|
T Consensus 72 g 72 (452)
T cd05295 72 G 72 (452)
T ss_pred c
Confidence 4
No 240
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=33.46 E-value=1.1e+02 Score=20.20 Aligned_cols=54 Identities=13% Similarity=0.126 Sum_probs=30.9
Q ss_pred CCeEEEeeCCCchHHHHHHHHHh-----cCCCCceeEEeccCCCChhhhhhhcCCCCCCCeEE
Q 026482 27 GTTRLYMAYTCPFAQRVWITRNY-----KGLQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLE 84 (238)
Q Consensus 27 ~~~~Ly~~~~sp~~~~v~~~L~~-----~gipy~~~~~~v~~~~~~~~~~~~~~p~~~vP~L~ 84 (238)
..+.+|+.++|+.|+...-.+.. .+.+ .+.+..+|....+ .... .+ ...+|++.
T Consensus 20 ~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~-~~~~~~id~~~~~-~~~~-~~-~~~~Pt~~ 78 (104)
T cd02995 20 DVLVEFYAPWCGHCKALAPIYEELAEKLKGDD-NVVIAKMDATAND-VPSE-FV-VDGFPTIL 78 (104)
T ss_pred cEEEEEECCCCHHHHHHhhHHHHHHHHhcCCC-CEEEEEEeCcchh-hhhh-cc-CCCCCEEE
Confidence 34677888999999875444432 2211 3666666654332 1111 32 26889887
No 241
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=32.94 E-value=2e+02 Score=21.56 Aligned_cols=61 Identities=18% Similarity=0.199 Sum_probs=37.8
Q ss_pred CeEEEeeCCCchHHHHHHHHHhc--CCCCceeEEeccCCCChhhhhhhcCCCCCCCeEE--eCCeEe
Q 026482 28 TTRLYMAYTCPFAQRVWITRNYK--GLQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLE--HNGKII 90 (238)
Q Consensus 28 ~~~Ly~~~~sp~~~~v~~~L~~~--gipy~~~~~~v~~~~~~~~~~~~~~p~~~vP~L~--~~g~~l 90 (238)
.+.=|+..||+.|+.+.=.|++. +...++.++.+|....++.-. ----.-+|+++ .||...
T Consensus 64 VlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~--~Y~I~avPtvlvfknGe~~ 128 (150)
T KOG0910|consen 64 VLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAE--DYEISAVPTVLVFKNGEKV 128 (150)
T ss_pred EEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHh--hcceeeeeEEEEEECCEEe
Confidence 35567778999998654444421 122348889888866654321 12346689887 677665
No 242
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=31.05 E-value=92 Score=19.95 Aligned_cols=22 Identities=9% Similarity=0.078 Sum_probs=16.6
Q ss_pred eEEEeeCCCchHHHHHHHHHhc
Q 026482 29 TRLYMAYTCPFAQRVWITRNYK 50 (238)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~L~~~ 50 (238)
+.+|..+.||+|....-.+...
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~ 22 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKL 22 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHH
Confidence 3578889999998876666553
No 243
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=29.84 E-value=63 Score=23.21 Aligned_cols=24 Identities=17% Similarity=0.306 Sum_probs=17.7
Q ss_pred CCCCeEEEeeCCCchHHHHHHHHH
Q 026482 25 FDGTTRLYMAYTCPFAQRVWITRN 48 (238)
Q Consensus 25 ~~~~~~Ly~~~~sp~~~~v~~~L~ 48 (238)
++-++..|..+.||+|++..-.+.
T Consensus 5 a~~~i~~f~D~~Cp~C~~~~~~l~ 28 (154)
T cd03023 5 GDVTIVEFFDYNCGYCKKLAPELE 28 (154)
T ss_pred CCEEEEEEECCCChhHHHhhHHHH
Confidence 445678888899999998754443
No 244
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=27.27 E-value=1.3e+02 Score=22.33 Aligned_cols=75 Identities=15% Similarity=0.115 Sum_probs=48.3
Q ss_pred CCCCeEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCCChhhhhhhcC-C--CCCCCeEEeCCeEe---echHHHHH
Q 026482 25 FDGTTRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQDKPAWYKEKVY-P--SNKVPSLEHNGKII---GESLDLIN 98 (238)
Q Consensus 25 ~~~~~~Ly~~~~sp~~~~v~~~L~~~gipy~~~~~~v~~~~~~~~~~~~~~-p--~~~vP~L~~~g~~l---~eS~aI~~ 98 (238)
..-.+..|..|.|++|..-.-.|+.+|. ++..+..+. -. .+++++. | ....=+.+.+|..+ .--.+|.+
T Consensus 24 ~~~~~~vyksPnCGCC~~w~~~mk~~Gf--~Vk~~~~~d--~~-alK~~~gIp~e~~SCHT~VI~Gy~vEGHVPa~aI~~ 98 (149)
T COG3019 24 QATEMVVYKSPNCGCCDEWAQHMKANGF--EVKVVETDD--FL-ALKRRLGIPYEMQSCHTAVINGYYVEGHVPAEAIAR 98 (149)
T ss_pred ceeeEEEEeCCCCccHHHHHHHHHhCCc--EEEEeecCc--HH-HHHHhcCCChhhccccEEEEcCEEEeccCCHHHHHH
Confidence 4556999999999999988888888887 455554332 11 1111111 1 13344566677665 44788999
Q ss_pred HHHhcC
Q 026482 99 YVDSNF 104 (238)
Q Consensus 99 yL~~~~ 104 (238)
.|.+..
T Consensus 99 ll~~~p 104 (149)
T COG3019 99 LLAEKP 104 (149)
T ss_pred HHhCCC
Confidence 998877
No 245
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=26.48 E-value=62 Score=20.02 Aligned_cols=25 Identities=20% Similarity=0.062 Sum_probs=18.1
Q ss_pred eEEEeeCCCchHHHHHHHHHhcCCC
Q 026482 29 TRLYMAYTCPFAQRVWITRNYKGLQ 53 (238)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~L~~~gip 53 (238)
.+||.....--++.++-+|+..||+
T Consensus 1 ~~l~~~~~~~ea~~i~~~L~~~gI~ 25 (67)
T PF09413_consen 1 KKLYTAGDPIEAELIKGLLEENGIP 25 (67)
T ss_dssp EEEEEE--HHHHHHHHHHHHHTT--
T ss_pred CEEEEcCCHHHHHHHHHHHHhCCCc
Confidence 3678887777788999999999997
No 246
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=26.30 E-value=90 Score=21.32 Aligned_cols=68 Identities=15% Similarity=0.216 Sum_probs=42.3
Q ss_pred CchHHHHHHHHHhcCCCCceeEEeccCCCChhhhhhhcCCCCCCCeEEeCCeEeechHHHHHHHHhcCCCCCC
Q 026482 37 CPFAQRVWITRNYKGLQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLEHNGKIIGESLDLINYVDSNFEGPSL 109 (238)
Q Consensus 37 sp~~~~v~~~L~~~gipy~~~~~~v~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~~~~~~~~l 109 (238)
-|-+....-.|+..|++ +-++.=+....++.+..++...| ++ +..+.+++-..++.+||.+..+....
T Consensus 16 ipga~e~l~~L~~~g~~--~~~lTNns~~s~~~~~~~L~~~G-i~--~~~~~i~ts~~~~~~~l~~~~~~~~v 83 (101)
T PF13344_consen 16 IPGAVEALDALRERGKP--VVFLTNNSSRSREEYAKKLKKLG-IP--VDEDEIITSGMAAAEYLKEHKGGKKV 83 (101)
T ss_dssp -TTHHHHHHHHHHTTSE--EEEEES-SSS-HHHHHHHHHHTT-TT----GGGEEEHHHHHHHHHHHHTTSSEE
T ss_pred CcCHHHHHHHHHHcCCC--EEEEeCCCCCCHHHHHHHHHhcC-cC--CCcCEEEChHHHHHHHHHhcCCCCEE
Confidence 34556666777888986 66665444445455443343333 45 45588999999999999997665554
No 247
>PF12062 HSNSD: heparan sulfate-N-deacetylase; InterPro: IPR021930 This family of proteins is are heparan sulphate N-deacetylase enzymes. This protein is found in eukaryotes. This enzyme is often found associated with PF00685 from PFAM. ; GO: 0015016 [heparan sulfate]-glucosamine N-sulfotransferase activity, 0016787 hydrolase activity
Probab=25.72 E-value=3.1e+02 Score=24.73 Aligned_cols=50 Identities=14% Similarity=0.149 Sum_probs=33.9
Q ss_pred eEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCCChhhhhhhcCCCCCCCeEEeCC-----eEeech
Q 026482 29 TRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLEHNG-----KIIGES 93 (238)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~L~~~gipy~~~~~~v~~~~~~~~~~~~~~p~~~vP~L~~~g-----~~l~eS 93 (238)
+.++..-+|...+.+..+|+...++|+.++ ..-.|.+|+|.+++ .+|+|.
T Consensus 63 LVFvES~YS~lGq~Iv~ILes~Rf~y~~ei---------------~~~kg~lP~LT~~~kGRy~lII~EN 117 (487)
T PF12062_consen 63 LVFVESQYSQLGQDIVAILESNRFKYKVEI---------------ASGKGDLPVLTDNDKGRYSLIIFEN 117 (487)
T ss_pred EEEEeeccchhhHHHHHHHHhceeeEEEEE---------------ccCCCCCCccccCCCCcEEEEEehh
Confidence 444444578999999999999999755444 22346788888543 256664
No 248
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=24.26 E-value=99 Score=22.99 Aligned_cols=23 Identities=13% Similarity=0.167 Sum_probs=17.2
Q ss_pred CCCCeEEEeeCCCchHHHHHHHH
Q 026482 25 FDGTTRLYMAYTCPFAQRVWITR 47 (238)
Q Consensus 25 ~~~~~~Ly~~~~sp~~~~v~~~L 47 (238)
.+.++..|..+.||+|.+..-.+
T Consensus 15 ~~~~i~~f~D~~Cp~C~~~~~~~ 37 (178)
T cd03019 15 GKPEVIEFFSYGCPHCYNFEPIL 37 (178)
T ss_pred CCcEEEEEECCCCcchhhhhHHH
Confidence 44567788889999998765554
No 249
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=23.25 E-value=2.1e+02 Score=18.16 Aligned_cols=25 Identities=16% Similarity=0.199 Sum_probs=20.9
Q ss_pred CCCeEEeCCeEeechHHHHHHHHhcC
Q 026482 79 KVPSLEHNGKIIGESLDLINYVDSNF 104 (238)
Q Consensus 79 ~vP~L~~~g~~l~eS~aI~~yL~~~~ 104 (238)
+-|++..+| ..+|-.+|.+||....
T Consensus 15 ~dPVi~~~G-~tyer~~I~~~l~~~~ 39 (73)
T PF04564_consen 15 RDPVILPSG-HTYERSAIERWLEQNG 39 (73)
T ss_dssp SSEEEETTS-EEEEHHHHHHHHCTTS
T ss_pred hCceeCCcC-CEEcHHHHHHHHHcCC
Confidence 458888777 8999999999998833
No 250
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=22.70 E-value=95 Score=24.04 Aligned_cols=15 Identities=27% Similarity=0.764 Sum_probs=11.8
Q ss_pred eEEEeeCCCchHHHH
Q 026482 29 TRLYMAYTCPFAQRV 43 (238)
Q Consensus 29 ~~Ly~~~~sp~~~~v 43 (238)
+..|...+||+|++.
T Consensus 73 lV~FwaswCp~C~~e 87 (181)
T PRK13728 73 VVLFMQGHCPYCHQF 87 (181)
T ss_pred EEEEECCCCHhHHHH
Confidence 556677899999875
No 251
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=22.52 E-value=3.5e+02 Score=20.47 Aligned_cols=40 Identities=13% Similarity=0.194 Sum_probs=23.2
Q ss_pred CCCCeEEEee-CCCchHHH-------HHHHHHhcCCCCceeEEeccCCCC
Q 026482 25 FDGTTRLYMA-YTCPFAQR-------VWITRNYKGLQDEIKLVAFDLQDK 66 (238)
Q Consensus 25 ~~~~~~Ly~~-~~sp~~~~-------v~~~L~~~gipy~~~~~~v~~~~~ 66 (238)
....+.||.+ .+||-|+. +--.+...+-| ++++-|+....
T Consensus 32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~--fEVvfVS~D~~ 79 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAP--FEVVFVSSDRD 79 (157)
T ss_pred CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCc--eEEEEEecCCC
Confidence 3344667766 47998874 22233344444 77777776443
No 252
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=21.55 E-value=1.6e+02 Score=20.50 Aligned_cols=38 Identities=11% Similarity=0.013 Sum_probs=21.4
Q ss_pred eEEEeeCCCchHHHHHHHHHhcCCCCceeEEeccCCCC
Q 026482 29 TRLYMAYTCPFAQRVWITRNYKGLQDEIKLVAFDLQDK 66 (238)
Q Consensus 29 ~~Ly~~~~sp~~~~v~~~L~~~gipy~~~~~~v~~~~~ 66 (238)
+..|...+||.|+...=.|....-.+.++++.++..+.
T Consensus 29 vv~F~a~~C~~C~~~~~~l~~l~~~~~~~vv~v~~~~~ 66 (127)
T cd03010 29 LLNVWASWCAPCREEHPVLMALARQGRVPIYGINYKDN 66 (127)
T ss_pred EEEEEcCcCHHHHHHHHHHHHHHHhcCcEEEEEECCCC
Confidence 44556689999986444443332223356666665443
No 253
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=21.51 E-value=3.8e+02 Score=24.44 Aligned_cols=73 Identities=16% Similarity=0.250 Sum_probs=44.8
Q ss_pred eEEEeeCCCchHHH-------HHHHHHhcCCCCceeEEeccCCCChhhhhhhcCCCCCCCeEE--eCCeE------eech
Q 026482 29 TRLYMAYTCPFAQR-------VWITRNYKGLQDEIKLVAFDLQDKPAWYKEKVYPSNKVPSLE--HNGKI------IGES 93 (238)
Q Consensus 29 ~~Ly~~~~sp~~~~-------v~~~L~~~gipy~~~~~~v~~~~~~~~~~~~~~p~~~vP~L~--~~g~~------l~eS 93 (238)
+..||.|||+.|.+ +--.|.+.|=+ +.+..||-......- . ---....|+|. .+|.. .-+.
T Consensus 46 lVeFYAPWCghck~LaPey~kAA~~Lke~~s~--i~LakVDat~~~~~~-~-~y~v~gyPTlkiFrnG~~~~~Y~G~r~a 121 (493)
T KOG0190|consen 46 LVEFYAPWCGHCKALAPEYEKAATELKEEGSP--VKLAKVDATEESDLA-S-KYEVRGYPTLKIFRNGRSAQDYNGPREA 121 (493)
T ss_pred EEEEEchhhhhhhhhCcHHHHHHHHhhccCCC--ceeEEeecchhhhhH-h-hhcCCCCCeEEEEecCCcceeccCcccH
Confidence 56788899999975 23334444334 667777654432221 1 12345578886 45543 3568
Q ss_pred HHHHHHHHhcCC
Q 026482 94 LDLINYVDSNFE 105 (238)
Q Consensus 94 ~aI~~yL~~~~~ 105 (238)
..|+.||-++.+
T Consensus 122 dgIv~wl~kq~g 133 (493)
T KOG0190|consen 122 DGIVKWLKKQSG 133 (493)
T ss_pred HHHHHHHHhccC
Confidence 899999988875
No 254
>PLN02309 5'-adenylylsulfate reductase
Probab=21.35 E-value=1.7e+02 Score=26.29 Aligned_cols=54 Identities=20% Similarity=0.318 Sum_probs=31.5
Q ss_pred CeEEEeeCCCchHHHHHHHHH-----hcCCCCceeEEeccCC-CChhhhhhhcCCCCCCCeEE
Q 026482 28 TTRLYMAYTCPFAQRVWITRN-----YKGLQDEIKLVAFDLQ-DKPAWYKEKVYPSNKVPSLE 84 (238)
Q Consensus 28 ~~~Ly~~~~sp~~~~v~~~L~-----~~gipy~~~~~~v~~~-~~~~~~~~~~~p~~~vP~L~ 84 (238)
.+..|+.++|++|+.+.-.+. +.+. .+.+..++.. ...+.... ..-...+|++.
T Consensus 368 vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~--~V~f~kVD~d~~~~~la~~-~~~I~~~PTil 427 (457)
T PLN02309 368 WLVVLYAPWCPFCQAMEASYEELAEKLAGS--GVKVAKFRADGDQKEFAKQ-ELQLGSFPTIL 427 (457)
T ss_pred EEEEEECCCChHHHHHHHHHHHHHHHhccC--CeEEEEEECCCcchHHHHh-hCCCceeeEEE
Confidence 466888899999987554443 2233 2566666655 33322211 12356789987
No 255
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=20.91 E-value=1.8e+02 Score=22.63 Aligned_cols=33 Identities=15% Similarity=0.216 Sum_probs=20.9
Q ss_pred CeEEEeeCCCchHHH----HHHHHHhcCCCCceeEEecc
Q 026482 28 TTRLYMAYTCPFAQR----VWITRNYKGLQDEIKLVAFD 62 (238)
Q Consensus 28 ~~~Ly~~~~sp~~~~----v~~~L~~~gipy~~~~~~v~ 62 (238)
++.+|+...||||-- +.-++...++ +++...+.
T Consensus 2 ~Id~~~D~vcPwcylg~~~l~~~~~~~~v--~i~~~P~~ 38 (209)
T cd03021 2 KIELYYDVVSPYSYLAFEVLCRYQTAWNV--DITYVPVF 38 (209)
T ss_pred ceEEEEeCCChHHHHHHHHHHHHHHHhCC--eEEEEeee
Confidence 478999999999953 4444455555 34544443
No 256
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.12 E-value=99 Score=20.18 Aligned_cols=20 Identities=15% Similarity=0.265 Sum_probs=17.1
Q ss_pred CCchHHHHHHHHHhcCCCCc
Q 026482 36 TCPFAQRVWITRNYKGLQDE 55 (238)
Q Consensus 36 ~sp~~~~v~~~L~~~gipy~ 55 (238)
--+|++|+.-+|+..|++|+
T Consensus 14 evGF~rk~L~I~E~~~is~E 33 (76)
T cd04911 14 EVGFGRKLLSILEDNGISYE 33 (76)
T ss_pred hhcHHHHHHHHHHHcCCCEe
Confidence 35799999999999999843
Done!