BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026485
(238 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1W6J|A Chain A, Structure Of Human Osc In Complex With Ro 48-8071
Length = 732
Score = 194 bits (492), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 92/239 (38%), Positives = 136/239 (56%), Gaps = 9/239 (3%)
Query: 1 MQSETGGVPAWEPTGAPSWLELLNPIEFLDEVIIEYDKVECTASALKAMTLFKKLYPKHR 60
M++ GG +E LELLNP E +++I+Y VECT++ ++A+ F K +P+HR
Sbjct: 493 MRNPDGGFATYETKRGGHLLELLNPSEVFGDIMIDYTYVECTSAVMQALKYFHKRFPEHR 552
Query: 61 TKEVKNFIAKATKFIEDIQKSDGSWYGSWGICFTYAAWFAISGLVAAKKTYSN---CLAI 117
E++ + + +F Q++DGSW GSWG+CFTY WF + +TY + C +
Sbjct: 553 AAEIRETLTQGLEFCRRQQRADGSWEGSWGVCFTYGTWFGLEAFACMGQTYRDGTACAEV 612
Query: 118 RKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMERDPT 177
+A DFLL Q DGGWGE + SC ++Y L +S + T WAMM L+ D
Sbjct: 613 SRACDFLLSRQMADGGWGEDFESCEERRY--LQSAQSQIHNTCWAMMGLMAV--RHPDIE 668
Query: 178 PLHRAAKLLINSQLEDGDFPQQELTGVFMENCMLHYPIYRNIFPMWALAEYRSRLLLPE 236
R + L+ QL +GD+PQ+ + GVF ++C + Y YRNIFP+WAL + L PE
Sbjct: 669 AQERGVRCLLEKQLPNGDWPQENIAGVFNKSCAISYTSYRNIFPIWALGRFSQ--LYPE 725
>pdb|1W6K|A Chain A, Structure Of Human Osc In Complex With Lanosterol
Length = 732
Score = 193 bits (491), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 91/239 (38%), Positives = 136/239 (56%), Gaps = 9/239 (3%)
Query: 1 MQSETGGVPAWEPTGAPSWLELLNPIEFLDEVIIEYDKVECTASALKAMTLFKKLYPKHR 60
M++ GG +E LELLNP E +++I+Y VECT++ ++A+ F K +P+HR
Sbjct: 493 MRNPDGGFATYETKRGGHLLELLNPSEVFGDIMIDYTYVECTSAVMQALKYFHKRFPEHR 552
Query: 61 TKEVKNFIAKATKFIEDIQKSDGSWYGSWGICFTYAAWFAISGLVAAKKTYSN---CLAI 117
E++ + + +F Q++DGSW GSWG+CFTY WF + +TY + C +
Sbjct: 553 AAEIRETLTQGLEFCRRQQRADGSWEGSWGVCFTYGTWFGLEAFACMGQTYRDGTACAEV 612
Query: 118 RKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMERDPT 177
+A DFLL Q DGGWGE + SC ++Y+ +S + T WAMM L+ D
Sbjct: 613 SRACDFLLSRQMADGGWGEDFESCEERRYV--QSAQSQIHNTCWAMMGLMAV--RHPDIE 668
Query: 178 PLHRAAKLLINSQLEDGDFPQQELTGVFMENCMLHYPIYRNIFPMWALAEYRSRLLLPE 236
R + L+ QL +GD+PQ+ + GVF ++C + Y YRNIFP+WAL + L PE
Sbjct: 669 AQERGVRCLLEKQLPNGDWPQENIAGVFNKSCAISYTSYRNIFPIWALGRFSQ--LYPE 725
>pdb|3SQC|A Chain A, Squalene-Hopene Cyclase
pdb|3SQC|B Chain B, Squalene-Hopene Cyclase
pdb|3SQC|C Chain C, Squalene-Hopene Cyclase
Length = 631
Score = 97.1 bits (240), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 72/234 (30%), Positives = 108/234 (46%), Gaps = 17/234 (7%)
Query: 1 MQSETGGVPAWEPTGAPSWLELLNPIEFLD-EVIIEYDKVECTASALKAMTLFKKLYPKH 59
MQS GG W + +L N I F D + + + TA L+ F
Sbjct: 410 MQSSNGG---WGAYDVDNTSDLPNHIPFCDFGEVTDPPSEDVTAHVLECFGSFG------ 460
Query: 60 RTKEVKNFIAKATKFIEDIQKSDGSWYGSWGICFTYAAWFAISGLVAAKKTYSNCLAIRK 119
+ I +A ++++ QK DGSW+G WG+ + Y +S L A I+K
Sbjct: 461 -YDDAWKVIRRAVEYLKREQKPDGSWFGRWGVNYLYGTGAVVSALKAVGIDTREPY-IQK 518
Query: 120 ATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMERDPTPL 179
A D++ + Q DGGWGE RS + Y S QTAWA+M+LI G+ E +
Sbjct: 519 ALDWVEQHQNPDGGWGEDCRSYEDPAYA--GKGASTPSQTAWALMALIAGGRAESEAA-- 574
Query: 180 HRAAKLLINSQLEDGDFPQQELTGV-FMENCMLHYPIYRNIFPMWALAEYRSRL 232
R + L+ +Q DG + + TG F + L Y +YR++FP AL Y+ +
Sbjct: 575 RRGVQYLVETQRPDGGWDEPYYTGTGFPGDFYLGYTMYRHVFPTLALGRYKQAI 628
>pdb|1GSZ|A Chain A, Crystal Structure Of A Squalene Cyclase In Complex With
The Potential Anticholesteremic Drug Ro48-8071
pdb|1GSZ|B Chain B, Crystal Structure Of A Squalene Cyclase In Complex With
The Potential Anticholesteremic Drug Ro48-8071
pdb|1GSZ|C Chain C, Crystal Structure Of A Squalene Cyclase In Complex With
The Potential Anticholesteremic Drug Ro48-8071
pdb|1H35|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H35|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H35|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H36|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H36|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H36|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H37|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H37|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H37|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H39|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H39|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H39|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H3A|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H3A|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H3A|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H3B|A Chain A, Squalene-Hopene Cyclase
pdb|1H3B|B Chain B, Squalene-Hopene Cyclase
pdb|1H3B|C Chain C, Squalene-Hopene Cyclase
pdb|1H3C|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H3C|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H3C|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O6H|A Chain A, Squalene-Hopene Cyclase
pdb|1O6H|B Chain B, Squalene-Hopene Cyclase
pdb|1O6H|C Chain C, Squalene-Hopene Cyclase
pdb|1O6Q|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O6Q|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O6Q|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O6R|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O6R|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O6R|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O79|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O79|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O79|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1UMP|A Chain A, Geometry Of Triterpene Conversion To Pentacarbocyclic
Hopene
pdb|1UMP|B Chain B, Geometry Of Triterpene Conversion To Pentacarbocyclic
Hopene
pdb|1UMP|C Chain C, Geometry Of Triterpene Conversion To Pentacarbocyclic
Hopene
pdb|1SQC|A Chain A, Squalene-Hopene-Cyclase From Alicyclobacillus
Acidocaldarius
Length = 631
Score = 97.1 bits (240), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 72/234 (30%), Positives = 108/234 (46%), Gaps = 17/234 (7%)
Query: 1 MQSETGGVPAWEPTGAPSWLELLNPIEFLD-EVIIEYDKVECTASALKAMTLFKKLYPKH 59
MQS GG W + +L N I F D + + + TA L+ F
Sbjct: 410 MQSSNGG---WGAYDVDNTSDLPNHIPFCDFGEVTDPPSEDVTAHVLECFGSFG------ 460
Query: 60 RTKEVKNFIAKATKFIEDIQKSDGSWYGSWGICFTYAAWFAISGLVAAKKTYSNCLAIRK 119
+ I +A ++++ QK DGSW+G WG+ + Y +S L A I+K
Sbjct: 461 -YDDAWKVIRRAVEYLKREQKPDGSWFGRWGVNYLYGTGAVVSALKAVGIDTREPY-IQK 518
Query: 120 ATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMERDPTPL 179
A D++ + Q DGGWGE RS + Y S QTAWA+M+LI G+ E +
Sbjct: 519 ALDWVEQHQNPDGGWGEDCRSYEDPAYA--GKGASTPSQTAWALMALIAGGRAESEAA-- 574
Query: 180 HRAAKLLINSQLEDGDFPQQELTGV-FMENCMLHYPIYRNIFPMWALAEYRSRL 232
R + L+ +Q DG + + TG F + L Y +YR++FP AL Y+ +
Sbjct: 575 RRGVQYLVETQRPDGGWDEPYYTGTGFPGDFYLGYTMYRHVFPTLALGRYKQAI 628
>pdb|2SQC|A Chain A, Squalene-Hopene Cyclase From Alicyclobacillus
Acidocaldarius
pdb|2SQC|B Chain B, Squalene-Hopene Cyclase From Alicyclobacillus
Acidocaldarius
Length = 631
Score = 96.7 bits (239), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 72/234 (30%), Positives = 108/234 (46%), Gaps = 17/234 (7%)
Query: 1 MQSETGGVPAWEPTGAPSWLELLNPIEFLD-EVIIEYDKVECTASALKAMTLFKKLYPKH 59
MQS GG W + +L N I F D + + + TA L+ F
Sbjct: 410 MQSSNGG---WGAYDVDNTSDLPNHIPFSDFGEVTDPPSEDVTAHVLECFGSFG------ 460
Query: 60 RTKEVKNFIAKATKFIEDIQKSDGSWYGSWGICFTYAAWFAISGLVAAKKTYSNCLAIRK 119
+ I +A ++++ QK DGSW+G WG+ + Y +S L A I+K
Sbjct: 461 -YDDAWKVIRRAVEYLKREQKPDGSWFGRWGVNYLYGTGAVVSALKAVGIDTREPY-IQK 518
Query: 120 ATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMERDPTPL 179
A D++ + Q DGGWGE RS + Y S QTAWA+M+LI G+ E +
Sbjct: 519 ALDWVEQHQNPDGGWGEDCRSYEDPAYA--GKGASTPSQTAWALMALIAGGRAESEAA-- 574
Query: 180 HRAAKLLINSQLEDGDFPQQELTGV-FMENCMLHYPIYRNIFPMWALAEYRSRL 232
R + L+ +Q DG + + TG F + L Y +YR++FP AL Y+ +
Sbjct: 575 RRGVQYLVETQRPDGGWDEPYYTGTGFPGDFYLGYTMYRHVFPTLALGRYKQAI 628
>pdb|1DCE|B Chain B, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|D Chain D, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1LTX|B Chain B, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
pdb|3C72|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor
pdb|3DSS|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)
pdb|3DST|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Geranylgeranyl Pyrophosphate
pdb|3DSU|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Farnesyl Pyrophosphate
pdb|3DSV|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Mono-Prenylated Peptide Ser-Cys-Ser-Cys(Gg)
Derivated From Rab7
pdb|3DSW|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Mono-Prenylated Peptide Ser-Cys(Gg)-Ser-Cys
Derivated From Rab7
pdb|3DSX|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Di-Prenylated Peptide
Ser-Cys(Gg)-Ser-Cys(Gg) Derivated From Rab7
pdb|3HXB|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (Compound 6)
pdb|3HXC|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (compound 8)
pdb|3HXD|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (Compound 9)
pdb|3HXE|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (compound 37)
pdb|3HXF|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (compound 32)
Length = 331
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 11/95 (11%)
Query: 42 TASALKAMTLFKKLYPKHRTKEVKNFIAKATKFIEDIQKSDGSWYGS-WGICFTYAAWFA 100
T SA++ +TL+ ++ V N + K +++ +QK DGS+ G WG T ++ A
Sbjct: 98 TLSAVQILTLYDSIH-------VIN-VDKVVAYVQSLQKEDGSFAGDIWGEIDTRFSFCA 149
Query: 101 ISGLVAAKKTYSNCLAIRKATDFLLKIQCEDGGWG 135
++ L K + + + KA +F+L DGG+G
Sbjct: 150 VATLALLGKL--DAINVEKAIEFVLSCMNFDGGFG 182
>pdb|3PZ1|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) In
Complex With Bms3
pdb|3PZ2|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) In
Complex With Bms3 And Lipid Substrate Ggpp
pdb|3PZ3|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) In
Complex With Bms-Analogue 14
pdb|4EHM|B Chain B, Rabggtase In Complex With Covalently Bound Psoromic Acid
pdb|4GTS|B Chain B, Engineered Rabggtase In Complex With Bms Analogue 16
pdb|4GTT|B Chain B, Engineered Rabggtase In Complex With Bms Analogue 12
pdb|4GTV|B Chain B, Engineered Rabggtase In Complex With Bms Analogue 13
Length = 330
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 11/95 (11%)
Query: 42 TASALKAMTLFKKLYPKHRTKEVKNFIAKATKFIEDIQKSDGSWYGS-WGICFTYAAWFA 100
T SA++ +TL+ ++ V N + K +++ +QK DGS+ G WG T ++ A
Sbjct: 97 TLSAVQILTLYDSIH-------VIN-VDKVVAYVQSLQKEDGSFAGDIWGEIDTRFSFCA 148
Query: 101 ISGLVAAKKTYSNCLAIRKATDFLLKIQCEDGGWG 135
++ L K + + + KA +F+L DGG+G
Sbjct: 149 VATLALLGKL--DAINVEKAIEFVLSCMNFDGGFG 181
>pdb|1REP|C Chain C, Crystal Structure Of Replication Initiator Protein Repe54
Of Mini-F Plasmid Complexed With An Iteron Dna
Length = 251
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 74 FIEDIQKSDGSWYGSWGICFTYAAWFA-ISGLVAAK--KTYSNCLAIRKATDFLLKIQCE 130
F++ I+KSDG+ GIC + A +A I GL +A+ K L + + E
Sbjct: 42 FVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEE 101
Query: 131 DGGWGESYRSCP 142
D G + Y S P
Sbjct: 102 DAGDEKGYESFP 113
>pdb|2Z9O|A Chain A, Crystal Structure Of The Dimeric Form Of Repe In Complex
With The Repe Operator Dna
pdb|2Z9O|B Chain B, Crystal Structure Of The Dimeric Form Of Repe In Complex
With The Repe Operator Dna
Length = 266
Score = 32.3 bits (72), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 74 FIEDIQKSDGSWYGSWGICFTYAAWFA-ISGLVAAK--KTYSNCLAIRKATDFLLKIQCE 130
F++ I+KSDG+ GIC + A +A I GL +A+ K L + + E
Sbjct: 57 FVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEE 116
Query: 131 DGGWGESYRSCP 142
D G + Y S P
Sbjct: 117 DAGDEKGYESFP 128
>pdb|1RP0|A Chain A, Crystal Structure Of Thi1 Protein From Arabidopsis
Thaliana
pdb|1RP0|B Chain B, Crystal Structure Of Thi1 Protein From Arabidopsis
Thaliana
Length = 284
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 149 LDGNRSNLVQTAWAMMSLIHAGQMERDPTPLHRAAKLLINSQLEDGDF 196
+ GNR V T WA+++ H Q DP + AK++++S DG F
Sbjct: 148 VKGNRVGGVVTNWALVAQNHHTQSCMDPNVME--AKIVVSSCGHDGPF 193
>pdb|1GXO|A Chain A, Mutant D189a Of Family 10 Polysaccharide Lyase From
Cellvibrio Cellulosa In Complex With Trigalaturonic Acid
Length = 332
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
Query: 122 DFLLKIQCEDGGWGES--YRSCPNKKYIPLDGNRSN--LVQTAWAMMSLIHAGQMERDPT 177
D +L Q +GGW ++ Y S N G +N + + + +G +
Sbjct: 38 DVVLSYQQNNGGWPKNLDYNSVGNGGGGNESGTIANGATITEMVFLAEVYKSGGNTKYRD 97
Query: 178 PLHRAAKLLINSQLEDGDFPQ 198
+ +AA L+NSQ G PQ
Sbjct: 98 AVRKAANFLVNSQYSTGALPQ 118
>pdb|1GXM|A Chain A, Family 10 Polysaccharide Lyase From Cellvibrio Cellulosa
pdb|1GXM|B Chain B, Family 10 Polysaccharide Lyase From Cellvibrio Cellulosa
pdb|1GXN|A Chain A, Family 10 Polysaccharide Lyase From Cellvibrio Cellulosa
Length = 332
Score = 27.3 bits (59), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 6/82 (7%)
Query: 122 DFLLKIQCEDGGWGES--YRSCPNKKYIPLDG---NRSNLVQTAWAMMSLIHAGQMERDP 176
D +L Q +GGW ++ Y S N G N + + + + + + +G +
Sbjct: 38 DVVLSYQQNNGGWPKNLDYNSVGNGGGGNESGTIDNGATITEMVF-LAEVYKSGGNTKYR 96
Query: 177 TPLHRAAKLLINSQLEDGDFPQ 198
+ +AA L+NSQ G PQ
Sbjct: 97 DAVRKAANFLVNSQYSTGALPQ 118
>pdb|2KKQ|A Chain A, Solution Nmr Structure Of The Ig-Like C2-Type 2 Domain
Of Human Myotilin. Northeast Structural Genomics Target
Hr3158
Length = 116
Score = 27.3 bits (59), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 8/62 (12%)
Query: 33 IIEYD--KVECTASALKAMTLFKKL------YPKHRTKEVKNFIAKATKFIEDIQKSDGS 84
++E D K+EC SA+ LF K + R ++ + T I+D+ K D
Sbjct: 27 VLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAG 86
Query: 85 WY 86
WY
Sbjct: 87 WY 88
>pdb|1US2|A Chain A, Xylanase10c (Mutant E385a) From Cellvibrio Japonicus In
Complex With Xylopentaose
Length = 530
Score = 26.9 bits (58), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 3 SETGGVPAWEPTGAPSWLELLNPIEFLDEVI 33
++ GG+ W T A +WL+ L +F DE I
Sbjct: 460 NQRGGISVWGTTDANTWLDGLYREQFEDEKI 490
>pdb|1US3|A Chain A, Native Xylanase10c From Cellvibrio Japonicus
Length = 530
Score = 26.9 bits (58), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 3 SETGGVPAWEPTGAPSWLELLNPIEFLDEVI 33
++ GG+ W T A +WL+ L +F DE I
Sbjct: 460 NQRGGISVWGTTDANTWLDGLYREQFEDEKI 490
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,462,589
Number of Sequences: 62578
Number of extensions: 296744
Number of successful extensions: 916
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 870
Number of HSP's gapped (non-prelim): 30
length of query: 238
length of database: 14,973,337
effective HSP length: 96
effective length of query: 142
effective length of database: 8,965,849
effective search space: 1273150558
effective search space used: 1273150558
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)