Query 026485
Match_columns 238
No_of_seqs 175 out of 1591
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 08:37:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026485.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026485hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03012 Camelliol C synthase 100.0 3.2E-55 6.8E-60 409.2 22.7 235 1-235 525-759 (759)
2 PLN02993 lupeol synthase 100.0 2E-53 4.3E-58 397.9 22.0 233 1-233 525-757 (763)
3 TIGR03463 osq_cycl 2,3-oxidosq 100.0 2.8E-47 6E-52 356.1 20.2 223 1-228 412-634 (634)
4 TIGR01787 squalene_cyclas squa 100.0 9.5E-45 2.1E-49 338.6 19.8 221 1-230 400-621 (621)
5 TIGR01507 hopene_cyclase squal 100.0 8.3E-44 1.8E-48 332.5 20.5 218 1-232 415-633 (635)
6 KOG0497 Oxidosqualene-lanoster 100.0 4.3E-42 9.2E-47 310.6 14.3 234 1-234 524-757 (760)
7 cd02892 SQCY_1 Squalene cyclas 100.0 1.9E-40 4.1E-45 311.9 20.5 223 1-228 412-634 (634)
8 cd02889 SQCY Squalene cyclase 100.0 1.7E-32 3.8E-37 241.1 20.3 220 1-228 129-348 (348)
9 PLN03012 Camelliol C synthase 99.9 3.5E-27 7.7E-32 221.2 16.5 186 29-229 475-694 (759)
10 PLN02993 lupeol synthase 99.9 1.5E-26 3.2E-31 217.5 17.4 186 29-229 475-694 (763)
11 TIGR03463 osq_cycl 2,3-oxidosq 99.9 5.9E-25 1.3E-29 206.1 17.6 179 33-228 367-577 (634)
12 cd02897 A2M_2 Proteins similar 99.9 2.2E-24 4.8E-29 185.8 17.6 182 1-228 61-292 (292)
13 cd02896 complement_C3_C4_C5 Pr 99.9 1.3E-24 2.9E-29 187.5 15.7 181 1-228 64-297 (297)
14 COG1657 SqhC Squalene cyclase 99.9 1.8E-25 3.9E-30 200.7 6.3 222 1-232 293-514 (517)
15 TIGR01507 hopene_cyclase squal 99.9 2.2E-23 4.8E-28 195.4 17.9 179 30-229 371-572 (635)
16 cd02892 SQCY_1 Squalene cyclas 99.9 4.7E-22 1E-26 187.5 19.2 202 3-228 345-577 (634)
17 TIGR01787 squalene_cyclas squa 99.9 2.3E-21 4.9E-26 181.7 16.8 181 29-228 355-561 (621)
18 PF07678 A2M_comp: A-macroglob 99.9 5.1E-21 1.1E-25 161.0 14.9 182 1-229 9-245 (246)
19 cd02889 SQCY Squalene cyclase 99.9 1.5E-20 3.3E-25 165.3 17.8 149 36-199 88-261 (348)
20 PF13249 Prenyltrans_2: Prenyl 99.8 5.4E-21 1.2E-25 141.6 8.6 111 72-198 1-113 (113)
21 cd00688 ISOPREN_C2_like This g 99.8 1.3E-19 2.7E-24 153.9 17.4 185 1-228 116-300 (300)
22 cd02890 PTase Protein prenyltr 99.8 5.3E-19 1.1E-23 151.8 16.8 156 1-199 59-217 (286)
23 cd02894 GGTase-II Geranylgeran 99.8 1.6E-18 3.5E-23 149.0 17.2 138 40-199 80-218 (287)
24 cd00688 ISOPREN_C2_like This g 99.8 2.2E-18 4.8E-23 146.2 17.5 157 1-199 64-228 (300)
25 KOG0497 Oxidosqualene-lanoster 99.8 3E-19 6.5E-24 162.8 11.7 190 26-230 471-694 (760)
26 PLN03201 RAB geranylgeranyl tr 99.8 2.7E-18 5.8E-23 149.2 16.7 163 1-210 68-231 (316)
27 cd02894 GGTase-II Geranylgeran 99.7 7.2E-17 1.6E-21 138.7 15.6 153 41-226 131-285 (287)
28 PF13249 Prenyltrans_2: Prenyl 99.7 8.4E-18 1.8E-22 124.4 7.4 102 1-135 7-112 (113)
29 cd02895 GGTase-I Geranylgerany 99.7 2.6E-16 5.7E-21 136.3 16.3 176 3-210 67-247 (307)
30 PLN02710 farnesyltranstransfer 99.7 1.7E-16 3.6E-21 141.8 15.4 179 1-230 104-283 (439)
31 PF13243 Prenyltrans_1: Prenyl 99.7 2.6E-18 5.6E-23 126.6 3.0 108 68-192 1-108 (109)
32 cd02893 FTase Protein farnesyl 99.7 9.1E-16 2E-20 132.5 18.3 166 1-210 59-226 (299)
33 KOG0366 Protein geranylgeranyl 99.7 5.5E-16 1.2E-20 127.0 13.5 173 2-228 79-252 (329)
34 cd02890 PTase Protein prenyltr 99.7 1.3E-15 2.8E-20 130.9 15.7 145 34-199 22-168 (286)
35 cd02895 GGTase-I Geranylgerany 99.7 1.8E-15 4E-20 131.0 15.4 179 1-226 124-305 (307)
36 cd02891 A2M_like Proteins simi 99.7 4.7E-15 1E-19 126.7 16.3 180 1-228 61-282 (282)
37 PLN03201 RAB geranylgeranyl tr 99.6 7.1E-15 1.5E-19 127.8 16.1 154 42-228 136-291 (316)
38 cd02896 complement_C3_C4_C5 Pr 99.6 5E-15 1.1E-19 127.9 14.7 148 42-190 26-183 (297)
39 cd02897 A2M_2 Proteins similar 99.6 1.6E-14 3.5E-19 124.5 15.3 123 65-192 48-175 (292)
40 cd02893 FTase Protein farnesyl 99.6 6.2E-14 1.3E-18 121.1 16.5 144 35-199 23-168 (299)
41 COG5029 CAL1 Prenyltransferase 99.6 6.1E-14 1.3E-18 117.9 14.3 166 2-210 88-254 (342)
42 PLN02710 farnesyltranstransfer 99.5 3.2E-13 7E-18 120.9 14.0 145 34-199 67-213 (439)
43 KOG0366 Protein geranylgeranyl 99.5 6.7E-13 1.4E-17 109.1 12.1 163 42-228 146-318 (329)
44 TIGR02474 pec_lyase pectate ly 99.5 2.6E-12 5.6E-17 108.9 16.1 152 40-194 44-223 (290)
45 cd02891 A2M_like Proteins simi 99.4 2.5E-12 5.5E-17 109.8 12.8 124 62-191 45-172 (282)
46 KOG0365 Beta subunit of farnes 99.4 3.4E-12 7.3E-17 108.6 12.6 151 2-197 133-288 (423)
47 PF13243 Prenyltrans_1: Prenyl 99.4 4.2E-13 9.1E-18 98.7 4.1 97 1-129 11-107 (109)
48 COG5029 CAL1 Prenyltransferase 99.4 1.7E-11 3.6E-16 103.4 13.2 136 42-200 158-295 (342)
49 COG1657 SqhC Squalene cyclase 99.3 1E-11 2.2E-16 112.5 8.1 145 33-200 258-424 (517)
50 PF07678 A2M_comp: A-macroglob 99.2 2.3E-11 5E-16 102.4 8.1 116 70-189 1-125 (246)
51 KOG0365 Beta subunit of farnes 99.2 1.1E-09 2.4E-14 93.4 15.0 145 34-199 95-241 (423)
52 TIGR02474 pec_lyase pectate ly 99.1 7.7E-10 1.7E-14 93.9 9.9 121 1-134 79-225 (290)
53 KOG1366 Alpha-macroglobulin [P 99.0 1.5E-09 3.2E-14 109.2 11.4 183 1-232 983-1214(1436)
54 KOG0367 Protein geranylgeranyl 99.0 9.4E-09 2E-13 86.2 12.2 141 35-199 101-250 (347)
55 KOG0367 Protein geranylgeranyl 98.9 2E-08 4.3E-13 84.3 12.6 118 67-198 175-298 (347)
56 PF09492 Pec_lyase: Pectic aci 98.9 3.4E-09 7.4E-14 90.0 6.6 152 40-197 39-221 (289)
57 COG1689 Uncharacterized protei 98.7 1.8E-07 3.9E-12 75.4 11.3 47 153-203 208-254 (274)
58 PF00432 Prenyltrans: Prenyltr 98.5 4.9E-07 1.1E-11 55.4 5.6 42 117-170 3-44 (44)
59 PF01122 Cobalamin_bind: Eukar 98.5 1.9E-06 4E-11 74.6 11.0 107 35-167 182-291 (326)
60 PF00432 Prenyltrans: Prenyltr 98.2 4.6E-06 9.9E-11 51.0 5.1 42 67-108 2-44 (44)
61 PF09492 Pec_lyase: Pectic aci 98.2 8.8E-06 1.9E-10 69.4 8.2 105 96-204 40-163 (289)
62 PF01122 Cobalamin_bind: Eukar 97.7 0.00036 7.9E-09 60.6 9.7 124 42-199 148-280 (326)
63 COG1689 Uncharacterized protei 97.7 0.00031 6.6E-09 57.1 8.5 79 76-169 191-271 (274)
64 PF07470 Glyco_hydro_88: Glyco 97.4 0.0081 1.7E-07 52.7 14.9 184 39-232 123-336 (336)
65 PLN02592 ent-copalyl diphospha 97.2 0.0012 2.6E-08 63.9 7.9 84 91-190 94-177 (800)
66 KOG1366 Alpha-macroglobulin [P 97.1 0.00088 1.9E-08 68.5 6.5 98 40-139 946-1048(1436)
67 PLN02592 ent-copalyl diphospha 96.6 0.0028 6.1E-08 61.4 5.0 58 67-127 116-176 (800)
68 TIGR01535 glucan_glucosid gluc 96.5 0.087 1.9E-06 50.4 13.9 127 64-199 249-397 (648)
69 PF07470 Glyco_hydro_88: Glyco 96.4 0.022 4.8E-07 50.0 9.2 128 42-169 189-332 (336)
70 TIGR01577 oligosac_amyl oligos 96.4 0.066 1.4E-06 51.0 12.8 119 66-191 256-394 (616)
71 PLN02279 ent-kaur-16-ene synth 95.6 0.011 2.4E-07 57.5 3.7 78 37-126 53-135 (784)
72 PLN02279 ent-kaur-16-ene synth 95.6 0.02 4.4E-07 55.7 5.3 84 92-189 53-136 (784)
73 cd00249 AGE AGE domain; N-acyl 95.0 0.98 2.1E-05 40.0 13.9 96 37-135 50-159 (384)
74 COG4225 Predicted unsaturated 94.7 0.29 6.2E-06 42.8 9.2 94 42-135 206-311 (357)
75 TIGR01535 glucan_glucosid gluc 92.6 1.3 2.7E-05 42.6 10.5 78 40-127 298-385 (648)
76 cd00249 AGE AGE domain; N-acyl 92.2 1.5 3.2E-05 38.9 10.0 127 66-197 14-159 (384)
77 PF07944 DUF1680: Putative gly 91.0 1.1 2.3E-05 42.0 8.1 81 41-124 61-157 (520)
78 COG4225 Predicted unsaturated 89.0 16 0.00034 32.3 16.8 76 114-196 231-310 (357)
79 TIGR01577 oligosac_amyl oligos 88.6 23 0.0005 33.9 16.2 93 101-200 482-586 (616)
80 COG2373 Large extracellular al 87.5 4.8 0.0001 42.7 10.3 92 36-128 1167-1265(1621)
81 cd04794 euk_LANCL eukaryotic L 84.6 10 0.00023 33.2 9.8 79 45-126 170-258 (343)
82 PF07221 GlcNAc_2-epim: N-acyl 81.8 13 0.00028 32.6 9.3 93 39-135 20-125 (346)
83 COG2373 Large extracellular al 81.6 7.8 0.00017 41.2 8.8 66 113-189 1197-1264(1621)
84 PF07944 DUF1680: Putative gly 77.1 22 0.00048 33.3 9.7 71 113-186 81-157 (520)
85 PF10022 DUF2264: Uncharacteri 68.9 87 0.0019 28.0 11.9 170 33-235 103-282 (361)
86 COG1331 Highly conserved prote 68.5 1.2E+02 0.0026 29.4 13.7 40 40-82 411-450 (667)
87 KOG3760 Heparan sulfate-glucur 67.7 3.9 8.4E-05 36.7 2.1 23 115-137 380-402 (594)
88 PF07221 GlcNAc_2-epim: N-acyl 67.3 20 0.00043 31.4 6.6 98 94-198 20-126 (346)
89 cd04792 LanM-like LanM-like pr 64.9 1.5E+02 0.0033 29.3 13.8 123 63-197 561-687 (825)
90 cd04794 euk_LANCL eukaryotic L 63.7 1E+02 0.0022 26.9 12.9 44 156-199 167-210 (343)
91 PF05147 LANC_like: Lanthionin 62.2 52 0.0011 28.4 8.3 133 42-192 169-312 (355)
92 cd04791 LanC_SerThrkinase Lant 58.7 1.2E+02 0.0025 25.9 12.5 74 61-135 100-183 (321)
93 COG2942 N-acyl-D-glucosamine 2 54.9 62 0.0014 29.1 7.4 99 96-199 56-164 (388)
94 COG3533 Uncharacterized protei 54.4 1.6E+02 0.0035 27.7 9.9 69 60-129 83-168 (589)
95 COG3387 SGA1 Glucoamylase and 50.8 1.6E+02 0.0035 28.3 10.0 97 100-203 483-580 (612)
96 PF06662 C5-epim_C: D-glucuron 47.5 28 0.0006 28.1 3.7 100 128-230 1-109 (189)
97 cd04792 LanM-like LanM-like pr 45.9 3.1E+02 0.0068 27.1 12.4 88 45-135 592-687 (825)
98 COG2942 N-acyl-D-glucosamine 2 44.2 2.4E+02 0.0053 25.4 12.7 85 40-127 55-150 (388)
99 COG3387 SGA1 Glucoamylase and 42.2 21 0.00045 34.3 2.6 71 159-233 290-370 (612)
100 cd04791 LanC_SerThrkinase Lant 31.0 3.3E+02 0.0071 23.1 10.6 41 42-85 141-182 (321)
101 KOG2787 Lanthionine synthetase 28.9 4.2E+02 0.009 23.6 9.3 25 65-89 244-268 (403)
102 cd00194 UBA Ubiquitin Associat 28.3 73 0.0016 17.8 2.5 23 160-188 16-38 (38)
103 PF09282 Mago-bind: Mago bindi 28.0 7.1 0.00015 20.9 -1.7 12 75-86 5-16 (27)
104 PF05592 Bac_rhamnosid: Bacter 27.5 4.5E+02 0.0097 24.2 8.9 65 66-130 169-246 (509)
105 PF00627 UBA: UBA/TS-N domain; 27.5 71 0.0015 18.0 2.4 20 161-186 18-37 (37)
106 PF08124 Lyase_8_N: Polysaccha 26.8 4.3E+02 0.0093 23.0 9.5 82 42-129 61-150 (324)
107 PF00759 Glyco_hydro_9: Glycos 25.4 87 0.0019 28.4 3.7 21 113-133 96-116 (444)
108 KOG3760 Heparan sulfate-glucur 25.0 48 0.001 30.0 1.8 22 178-199 381-402 (594)
109 PLN02567 alpha,alpha-trehalase 24.8 6.1E+02 0.013 24.1 9.4 68 89-168 150-217 (554)
110 COG3538 Uncharacterized conser 22.6 5.7E+02 0.012 23.0 10.9 113 64-189 262-384 (434)
111 PLN02909 Endoglucanase 21.4 1.2E+02 0.0025 28.4 3.7 23 113-135 122-144 (486)
112 PF06662 C5-epim_C: D-glucuron 20.8 2.1E+02 0.0045 23.1 4.6 121 2-135 1-140 (189)
113 smart00165 UBA Ubiquitin assoc 20.2 1.1E+02 0.0025 16.8 2.3 21 161-187 17-37 (37)
No 1
>PLN03012 Camelliol C synthase
Probab=100.00 E-value=3.2e-55 Score=409.21 Aligned_cols=235 Identities=66% Similarity=1.234 Sum_probs=221.7
Q ss_pred CCCCCCCcccccCCCCchhhhccCcccccccccccCCCcchHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHhcc
Q 026485 1 MQSETGGVPAWEPTGAPSWLELLNPIEFLDEVIIEYDKVECTASALKAMTLFKKLYPKHRTKEVKNFIAKATKFIEDIQK 80 (238)
Q Consensus 1 ~qn~dGg~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~ 80 (238)
|||+||||++|+..++..||+.+||+|.|+|.++|++++|||+.+|++|..+++..+.++.+++++.|++|++||++.|+
T Consensus 525 mQn~dGGwaafe~~~~~~~le~lnp~E~F~d~mid~~y~dcTa~~l~aL~~f~~~~~~~r~~~i~~~i~rAv~~L~~~Q~ 604 (759)
T PLN03012 525 LQSKNGGMTAWEPAGAPEWLELLNPTEMFADIVIEHEYNECTSSAIQALILFKQLYPDHRTEEINAFIKKAAEYIENIQM 604 (759)
T ss_pred ccCCCCCEeeecCCcchHHHHhcChhhhhcCeecCCCcccHHHHHHHHHHHHhhhCcccchhhhHHHHHHHHHHHHHhcC
Confidence 79999999999999999999999999999999999999999999999999998876766667788999999999999999
Q ss_pred cCCCCcccccccchhhhHHHHHHHHHccccCccHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcccCCCCCCCCHHHHH
Q 026485 81 SDGSWYGSWGICFTYAAWFAISGLVAAKKTYSNCLAIRKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTA 160 (238)
Q Consensus 81 ~dG~w~~~~~~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~dGgw~~~~~~~~~~~y~~~~~~~~~~~~Ta 160 (238)
+||||++.|+.+++|+|++||.||..+|..+.+.+.|+||++||++.|++||||++++.+|..+.|.+.+++.|++++||
T Consensus 605 ~DGsW~G~Wgv~y~YgT~~aL~aL~a~g~~~~~~~~Irrav~fLls~Q~~DGGWGEs~~Sc~~~~y~~~~~~~S~~~qTa 684 (759)
T PLN03012 605 LDGSWYGNWGICFTYGTWFALAGLAAAGKTFNDCEAIRKGVHFLLAAQKDNGGWGESYLSCPKKIYIAQEGEISNLVQTA 684 (759)
T ss_pred CCCCCcccccccCCcHHHHHHHHHHHhCccCCCcHHHHHHHHHHHHhcCCCCCcCCCCCCCCCccccCCCCCCCcHHHHH
Confidence 99999999999999999999999999998765669999999999999999999999999999989987656689999999
Q ss_pred HHHHHHHHhCCCCCChHHHHHHHHHHHhcccCCCCCCCCccccccCCccccccCCchhhHHHHHHHHHHHhccCC
Q 026485 161 WAMMSLIHAGQMERDPTPLHRAAKLLINSQLEDGDFPQQELTGVFMENCMLHYPIYRNIFPMWALAEYRSRLLLP 235 (238)
Q Consensus 161 ~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~~dGgw~~~~~~~~~~~~~~~~~~~~~~~~~l~aL~~~~~~~~~~ 235 (238)
|||+||..+|..+.++++|+||++||+++|.+||+|.++.++|+|+++|||+|+.|+.+|||+||++|++.++.+
T Consensus 685 WAl~aLi~ag~~~~~~~~i~Rg~~~Ll~~Q~~dG~W~q~~~~G~F~~~~~i~Y~~Yr~~FPl~ALg~Y~~~~~~~ 759 (759)
T PLN03012 685 WALMGLIHAGQAERDPIPLHRAAKLIINSQLENGDFPQQEATGAFLKNCLLHYAAYRNIFPLWALAEYRARVPLP 759 (759)
T ss_pred HHHHHHHHcCCCCCCcHHHHHHHHHHHHcccCCCCCCCceeeeeeccceEEecCccchHHHHHHHHHHHHhccCC
Confidence 999999999987766668999999999999999999999999999999999999999999999999999998764
No 2
>PLN02993 lupeol synthase
Probab=100.00 E-value=2e-53 Score=397.91 Aligned_cols=233 Identities=66% Similarity=1.219 Sum_probs=217.8
Q ss_pred CCCCCCCcccccCCCCchhhhccCcccccccccccCCCcchHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHhcc
Q 026485 1 MQSETGGVPAWEPTGAPSWLELLNPIEFLDEVIIEYDKVECTASALKAMTLFKKLYPKHRTKEVKNFIAKATKFIEDIQK 80 (238)
Q Consensus 1 ~qn~dGg~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~ 80 (238)
|||+||||++|+..+++.||+.|||+|.|++.++|++++|+|+.||++|..+++..+.++.+++++.|++|++||++.|+
T Consensus 525 mQn~dGG~aafe~~~~~~~le~ln~ae~f~~~miD~~~~dcT~~vl~aL~~~~~~~p~~r~~ei~~~i~rAv~yL~~~Q~ 604 (763)
T PLN02993 525 LQSENGGVTAWEPVRAYKWLELLNPTDFFANTMVEREYVECTSAVIQALVLFKQLYPDHRTKEIIKSIEKAVQFIESKQT 604 (763)
T ss_pred hccCCCCEEeeeCCCchhHHHcCCHHHhhcCcccCCCCcCHHHHHHHHHHHhcccCcchhhhhHHHHHHHHHHHHHHhcC
Confidence 79999999999999999999999999999999999999999999999999997655677777888999999999999999
Q ss_pred cCCCCcccccccchhhhHHHHHHHHHccccCccHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcccCCCCCCCCHHHHH
Q 026485 81 SDGSWYGSWGICFTYAAWFAISGLVAAKKTYSNCLAIRKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTA 160 (238)
Q Consensus 81 ~dG~w~~~~~~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~dGgw~~~~~~~~~~~y~~~~~~~~~~~~Ta 160 (238)
+||||++.|+.+++|+|+++|.||..+|..+.+.+.|+||++||+++|++||||++.+.+|..+.|.+.+++.|++++||
T Consensus 605 ~DGSW~G~Wgv~y~YgT~~aL~aL~a~G~~~~~~~~IrrAv~fLls~Q~~DGGWGEs~~S~~~~~y~~~~~~~St~~qTA 684 (763)
T PLN02993 605 PDGSWYGNWGICFIYATWFALGGLAAAGKTYNDCLAMRKGVHFLLTIQRDDGGWGESYLSCPEQRYIPLEGNRSNLVQTA 684 (763)
T ss_pred CCCCcccccccccCcHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCCCCCcCcCcCcCCCcccccCCCCCCchhhHH
Confidence 99999999999999999999999999998765558999999999999999999999999998888887656789999999
Q ss_pred HHHHHHHHhCCCCCChHHHHHHHHHHHhcccCCCCCCCCccccccCCccccccCCchhhHHHHHHHHHHHhcc
Q 026485 161 WAMMSLIHAGQMERDPTPLHRAAKLLINSQLEDGDFPQQELTGVFMENCMLHYPIYRNIFPMWALAEYRSRLL 233 (238)
Q Consensus 161 ~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~~dGgw~~~~~~~~~~~~~~~~~~~~~~~~~l~aL~~~~~~~~ 233 (238)
|||++|..+|....++++|+||++||++.|.++|+|.++.++|+|+++|||+|+.|+.+|||+||++|++.+.
T Consensus 685 wAllaL~~aG~~~~~~~~l~Rgi~~L~~~Q~~~G~W~q~~~~G~F~~~~~i~Y~~Yr~~FPl~ALg~Y~~~~~ 757 (763)
T PLN02993 685 WAMMGLIHAGQAERDLIPLHRAAKLIITSQLENGDFPQQEILGAFMNTCMLHYATYRNTFPLWALAEYRKAAF 757 (763)
T ss_pred HHHHHHHHcCCCCCCcHHHHHHHHHHHhccCCCCCCCCcceeceECccceeccCccchHHHHHHHHHHHHhhh
Confidence 9999999998866555689999999999999999999999999999999999999999999999999998764
No 3
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=100.00 E-value=2.8e-47 Score=356.07 Aligned_cols=223 Identities=37% Similarity=0.732 Sum_probs=204.5
Q ss_pred CCCCCCCcccccCCCCchhhhccCcccccccccccCCCcchHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHhcc
Q 026485 1 MQSETGGVPAWEPTGAPSWLELLNPIEFLDEVIIEYDKVECTASALKAMTLFKKLYPKHRTKEVKNFIAKATKFIEDIQK 80 (238)
Q Consensus 1 ~qn~dGg~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~ 80 (238)
|||+||||++|+..++..||+.+||+|.|++.+++++++|+|+++|.+|..+++..+..+.+++++.|+++++||++.|+
T Consensus 412 ~Qn~dGGw~~y~~~~~~~~l~~~~~~~~f~~~~~d~~~~d~Ta~~l~aL~~~~~~~~~~~~~~i~~ai~rav~~L~~~Q~ 491 (634)
T TIGR03463 412 RQNEDGGFGTYERQRGPRVLELLNPSEMFSTCMTDVSYVECTSSCLQALAAWRKHHPHVPDGRITRAISRGVRFLRSRQR 491 (634)
T ss_pred hcCCCCCEeccCCCCcHHHHhcCChHHhhcccccCCCcCcHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHhcC
Confidence 79999999999999999999999999999999999999999999999999987654444456678899999999999999
Q ss_pred cCCCCcccccccchhhhHHHHHHHHHccccCccHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcccCCCCCCCCHHHHH
Q 026485 81 SDGSWYGSWGICFTYAAWFAISGLVAAKKTYSNCLAIRKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTA 160 (238)
Q Consensus 81 ~dG~w~~~~~~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~dGgw~~~~~~~~~~~y~~~~~~~~~~~~Ta 160 (238)
+||+|++.|+.+++|.|++++.||..+|... .++.++||++||+++|++||||++.+.++....|.+ +..++++.||
T Consensus 492 ~dGsW~g~Wg~~~~Y~T~~al~aL~~~G~~~-~~~~i~rA~~~Ll~~Q~~DGgWg~~~~s~~~~~y~~--~~~S~~~~TA 568 (634)
T TIGR03463 492 EDGSFPGSWGVCFTYGTFHGVMGLRAAGASP-DDMALQRAAAWLRSYQRADGGWGEVYESCLQARYVE--GKQSQAVMTS 568 (634)
T ss_pred CCCCccccCCCCCcHHHHHHHHHHHHcCCCc-CcHHHHHHHHHHHHccCCCCCccCccCccccccccC--CCCCcHHHHH
Confidence 9999999999999999999999999998865 468999999999999999999999888877777764 5679999999
Q ss_pred HHHHHHHHhCCCCCChHHHHHHHHHHHhcccCCCCCCCCccccccCCccccccCCchhhHHHHHHHHH
Q 026485 161 WAMMSLIHAGQMERDPTPLHRAAKLLINSQLEDGDFPQQELTGVFMENCMLHYPIYRNIFPMWALAEY 228 (238)
Q Consensus 161 ~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~~dGgw~~~~~~~~~~~~~~~~~~~~~~~~~l~aL~~~ 228 (238)
+||++|..++... .+.++|+++||+++|++||+|.+..++|+|+++|||+|+.|+.+|||+||++|
T Consensus 569 ~Al~aL~~~g~~~--~~~i~rgi~~L~~~Q~~dG~W~~~~~~G~f~~~~~l~Y~~Y~~~fpl~ALg~y 634 (634)
T TIGR03463 569 WALLALAEAGEGG--HDAVQRGVAWLRSRQQEDGRWPREPINGVFFGTAMLDYDLYLRYFPTWALAVC 634 (634)
T ss_pred HHHHHHHHcCCcC--CHHHHHHHHHHHHhCCCCCCCCCCceeeeeCcceeEecCccchHhHHHHhhcC
Confidence 9999999988654 34899999999999999999999999999999999999999999999999987
No 4
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=100.00 E-value=9.5e-45 Score=338.63 Aligned_cols=221 Identities=43% Similarity=0.843 Sum_probs=198.5
Q ss_pred CCCCCCCcccccCCCCchhhhccCcccccccccccCCCcchHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHhcc
Q 026485 1 MQSETGGVPAWEPTGAPSWLELLNPIEFLDEVIIEYDKVECTASALKAMTLFKKLYPKHRTKEVKNFIAKATKFIEDIQK 80 (238)
Q Consensus 1 ~qn~dGg~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~ 80 (238)
+||+||||++|+..++..||+.++|+|.|+|.++|+|++++|+++|++|..++. +.+++++.|+++++||++.|+
T Consensus 400 ~Qn~dGGw~ay~~~~~~~~l~~l~p~e~f~d~~~d~~~~~~T~~~l~aL~~~~~-----r~~~~~~~i~rAl~~L~~~Q~ 474 (621)
T TIGR01787 400 MQSSNGGFAAYDPDNTGEWLELLNPSEVFGDIMIDPPYVDVTARVIQALGAFGH-----RADEIRNVLERALEYLRREQR 474 (621)
T ss_pred HcCCCCCEeeeccccchHHHHHhcchhhhccccccCCCCchHHHHHHHHHHhcC-----ccHhHHHHHHHHHHHHHHhcC
Confidence 699999999999999999999999999999999999999999999999998752 223456899999999999999
Q ss_pred cCCCCcccccccchhhhHHHHHHHHHccccCccHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcccCCCCCCCCHHHHH
Q 026485 81 SDGSWYGSWGICFTYAAWFAISGLVAAKKTYSNCLAIRKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTA 160 (238)
Q Consensus 81 ~dG~w~~~~~~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~dGgw~~~~~~~~~~~y~~~~~~~~~~~~Ta 160 (238)
+||+|.+.|+.+++|+|++++.+|..+|......+.++||++||+++|++||||++.+.++..+.|.+ .+.|+++.|+
T Consensus 475 ~DGsw~g~wg~~y~YgT~~al~aL~~~G~~~~~~~~i~rA~~~L~~~Q~~DGGWge~~~s~~~~~y~~--~~~S~~s~Ta 552 (621)
T TIGR01787 475 ADGSWFGRWGVNYTYGTGFVLSALAAAGRTYRNCPEVQKACDWLLSRQMPDGGWGEDCFSYEDPSYVG--SGGSTPSQTG 552 (621)
T ss_pred CCCCCcccCCCCCchhHHHHHHHHHHhCCcccCCHHHHHHHHHHHhhcCCCCCCCcCCccccccccCC--CCCCCHHHHH
Confidence 99999999999999999999999999987643448899999999999999999999887777767764 3568999999
Q ss_pred HHHHHHHHhCCCCCChHHHHHHHHHHHhcccCCCCCCCCccccc-cCCccccccCCchhhHHHHHHHHHHH
Q 026485 161 WAMMSLIHAGQMERDPTPLHRAAKLLINSQLEDGDFPQQELTGV-FMENCMLHYPIYRNIFPMWALAEYRS 230 (238)
Q Consensus 161 ~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~~dGgw~~~~~~~~-~~~~~~~~~~~~~~~~~l~aL~~~~~ 230 (238)
|||+||..++... .++++|+++||+++|++||+|.+..++|+ ||++|||+|+.|+++|||+||++|++
T Consensus 553 ~AL~AL~~ag~~~--~~ai~rgv~~L~~~Q~~dG~w~~~~~~g~~~p~~~~i~Y~~Y~~~fpl~ALg~y~~ 621 (621)
T TIGR01787 553 WALMALIAAGEAD--SEAIERGVKYLLETQRPDGDWPQEYITGVGFPKNFYLKYTNYRNIFPLWALGRYRQ 621 (621)
T ss_pred HHHHHHHHcCccc--hHHHHHHHHHHHHhCCCCCCCCCccccCCCCcccceecccccchhhHHHHHHHHhC
Confidence 9999999988654 24899999999999999999999999998 55999999999999999999999964
No 5
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=100.00 E-value=8.3e-44 Score=332.51 Aligned_cols=218 Identities=31% Similarity=0.534 Sum_probs=193.3
Q ss_pred CCCCCCCcccccCCCCchhhhccCcccccccccccCCCcchHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHhcc
Q 026485 1 MQSETGGVPAWEPTGAPSWLELLNPIEFLDEVIIEYDKVECTASALKAMTLFKKLYPKHRTKEVKNFIAKATKFIEDIQK 80 (238)
Q Consensus 1 ~qn~dGg~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~ 80 (238)
|||+||||++|+..+...|++++|.++ .+.++|+|++|+|+.+|++|..++.. . .++.|+++++||++.|+
T Consensus 415 ~Qn~dGgw~af~~~~~~~~l~~~~f~d--~~~~~D~~~~d~Ta~~l~al~~~g~~-~------~~~~i~rav~~L~~~Q~ 485 (635)
T TIGR01507 415 MQSSNGGWGAFDVDNTSDLLNHIPFCD--FGAVTDPPTADVTARVLECLGSFGYD-D------AWPVIERAVEYLKREQE 485 (635)
T ss_pred hcCCCCCEecccCCcchhHHhcCCccc--cccccCCCCccHHHHHHHHHHHhCCC-c------hhHHHHHHHHHHHHccC
Confidence 799999999999999999999997332 12578999999999999999987531 1 14789999999999999
Q ss_pred cCCCCcccccccchhhhHHHHHHHHHccccCccHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcccCCCCCCCCHHHHH
Q 026485 81 SDGSWYGSWGICFTYAAWFAISGLVAAKKTYSNCLAIRKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTA 160 (238)
Q Consensus 81 ~dG~w~~~~~~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~dGgw~~~~~~~~~~~y~~~~~~~~~~~~Ta 160 (238)
+||+|.+.|+.+++|+|++++.+|...|... ..+.++||++||+++|++||||++...++..+.|.+ .+.++++.|+
T Consensus 486 ~dG~W~g~wg~~~~Y~T~~al~aL~~~g~~~-~~~~i~rAv~wL~~~Q~~DGGWge~~~sy~~~~~~g--~g~s~~s~TA 562 (635)
T TIGR01507 486 PDGSWFGRWGVNYLYGTGAVLSALKAVGIDT-REPYIQKALAWLESHQNPDGGWGEDCRSYEDPAYAG--KGASTASQTA 562 (635)
T ss_pred CCCCCccCCCCccccHHHHHHHHHHHcCCCc-ccHHHHHHHHHHHHhcCCCCCCCCCCcccccccccC--CCCCcHHHHH
Confidence 9999999999999999999999999988764 578999999999999999999998877776666654 3578999999
Q ss_pred HHHHHHHHhCCCCCChHHHHHHHHHHHhcccCCCCCCCCccccc-cCCccccccCCchhhHHHHHHHHHHHhc
Q 026485 161 WAMMSLIHAGQMERDPTPLHRAAKLLINSQLEDGDFPQQELTGV-FMENCMLHYPIYRNIFPMWALAEYRSRL 232 (238)
Q Consensus 161 ~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~~dGgw~~~~~~~~-~~~~~~~~~~~~~~~~~l~aL~~~~~~~ 232 (238)
|||+||..++... .+.|+||++||+++|++||+|++..++|+ |+.+|||+|+.|+.+|||+||++|++.+
T Consensus 563 ~AL~AL~~ag~~~--~~~I~rav~~L~~~Q~~dG~W~e~~~~g~gfp~~~yi~Y~~Y~~~fpl~ALg~y~~~~ 633 (635)
T TIGR01507 563 WALIALIAAGRAE--SEAARRGVQYLVETQRPDGGWDEPYYTGTGFPGDFYLGYHMYRHVFPLLALARYKQAI 633 (635)
T ss_pred HHHHHHHHhCCCC--cHHHHHHHHHHHHhcCCCCCCCCcccccCcccceeeecccchhhHhHHHHHHHHHHhh
Confidence 9999999998754 35899999999999999999999999999 9999999999999999999999998843
No 6
>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism]
Probab=100.00 E-value=4.3e-42 Score=310.55 Aligned_cols=234 Identities=66% Similarity=1.210 Sum_probs=225.6
Q ss_pred CCCCCCCcccccCCCCchhhhccCcccccccccccCCCcchHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHhcc
Q 026485 1 MQSETGGVPAWEPTGAPSWLELLNPIEFLDEVIIEYDKVECTASALKAMTLFKKLYPKHRTKEVKNFIAKATKFIEDIQK 80 (238)
Q Consensus 1 ~qn~dGg~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~ 80 (238)
||+++||+.++++.++..||+.|||.|.|+|.+++.+++++|..+|.+|....+..|.++.+|++..|.+|++||.+.|+
T Consensus 524 lq~~~Gg~~~~e~~r~~~wLE~lnp~E~f~~~~ve~~yvEcT~s~I~aL~~F~k~~p~~r~~Ei~~~i~~av~~ie~~Q~ 603 (760)
T KOG0497|consen 524 LQSENGGFAAYEPARGYEWLELLNPAEVFGDIMVEYEYVECTSSAIQALVYFHKLFPGHRKKEIEKSIEKAVEFIEKLQL 603 (760)
T ss_pred hhhccCccccccccchHHHHHhcCchhcccceeeeecccccHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHHHHHcCC
Confidence 68999999999999999999999999999999999999999999999999999988999999999999999999999999
Q ss_pred cCCCCcccccccchhhhHHHHHHHHHccccCccHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcccCCCCCCCCHHHHH
Q 026485 81 SDGSWYGSWGICFTYAAWFAISGLVAAKKTYSNCLAIRKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTA 160 (238)
Q Consensus 81 ~dG~w~~~~~~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~dGgw~~~~~~~~~~~y~~~~~~~~~~~~Ta 160 (238)
+||+|++.|+.+++|+|.+++.+|..+|+.+.+-++++||++||++.|++||||++.+.+|..++|.+.++..+.+.+|+
T Consensus 604 ~DGSWyGsWgvCFtY~t~Fa~~gl~aaGkty~nc~~irka~~Fll~~Q~~~GGWgEs~lscp~~~Yi~~~gn~s~vv~T~ 683 (760)
T KOG0497|consen 604 PDGSWYGSWGVCFTYGTWFALRGLAAAGKTYENCEAIRKACDFLLSKQNPDGGWGESYLSCPEKRYIPLEGNKSNVVQTA 683 (760)
T ss_pred CCCcccchhhHHHHHHHHHhcchhhhcchhhhccHHHHHHHHHHHhhhcccCCCccccccCccccccccccccccchhHH
Confidence 99999999999999999999999999999887889999999999999999999999999999999999888899999999
Q ss_pred HHHHHHHHhCCCCCChHHHHHHHHHHHhcccCCCCCCCCccccccCCccccccCCchhhHHHHHHHHHHHhccC
Q 026485 161 WAMMSLIHAGQMERDPTPLHRAAKLLINSQLEDGDFPQQELTGVFMENCMLHYPIYRNIFPMWALAEYRSRLLL 234 (238)
Q Consensus 161 ~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~~dGgw~~~~~~~~~~~~~~~~~~~~~~~~~l~aL~~~~~~~~~ 234 (238)
+|+++|..++...+++-.+.||+..|.+.|.++|.|++....|.|..+|+|+|+.|+.+|+|+||++|++.+..
T Consensus 684 wAlm~Li~~~q~~rd~~P~hr~ak~linsQ~~nGdfpqq~i~g~f~~~~~~~y~~yr~~F~~waL~~y~~~~~~ 757 (760)
T KOG0497|consen 684 WALMALIMAGQAERDPLPLHRAAKVLINSQLENGDFPQQEIEGVFNKNCMIHYPTYRNIFPIWALGEYRKAYRL 757 (760)
T ss_pred HHHHHHHhcCCcccccchHHHHHHHHHhcccccCCcchhHHHHHhhhhhhhccchhhhhccHHHHHHHHHHhhh
Confidence 99999999999888777899999999999999999999999999999999999999999999999999998754
No 7
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=100.00 E-value=1.9e-40 Score=311.85 Aligned_cols=223 Identities=50% Similarity=0.933 Sum_probs=197.2
Q ss_pred CCCCCCCcccccCCCCchhhhccCcccccccccccCCCcchHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHhcc
Q 026485 1 MQSETGGVPAWEPTGAPSWLELLNPIEFLDEVIIEYDKVECTASALKAMTLFKKLYPKHRTKEVKNFIAKATKFIEDIQK 80 (238)
Q Consensus 1 ~qn~dGg~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~ 80 (238)
+||+||||++|+..++..|+..+.|.+.+++.++|++++++|+.+|.+|..++...+.++. ++++.++++++||++.|+
T Consensus 412 ~Qn~dGgf~~y~~~~~~~~~~~~~p~e~~g~~~~d~~~~~~Ta~~l~aL~~~~~~~~~~r~-~i~~~i~rAv~~L~~~Q~ 490 (634)
T cd02892 412 MQNSNGGFAAFEPDNTYHWLENLNPFEDFGDIMIDPPYVECTGSVLEALGLFGKLYPGHRR-EIDPAIRRAVKYLLREQE 490 (634)
T ss_pred ccCCCCCEeeecCCCchhhHhhcCchhhhcccccCCCCcchHHHHHHHHHHhcccCcchHH-HHHHHHHHHHHHHHHccC
Confidence 6999999999999888887888889998988899999999999999999998765343333 677899999999999999
Q ss_pred cCCCCcccccccchhhhHHHHHHHHHccccCccHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcccCCCCCCCCHHHHH
Q 026485 81 SDGSWYGSWGICFTYAAWFAISGLVAAKKTYSNCLAIRKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTA 160 (238)
Q Consensus 81 ~dG~w~~~~~~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~dGgw~~~~~~~~~~~y~~~~~~~~~~~~Ta 160 (238)
+||+|.+.|+.+++|.|++++.||..+|..+..++.++++++||+++|++||||++....+..+.|.+ ++.+++..||
T Consensus 491 ~DGsW~g~wg~~~~Y~T~~al~AL~~~G~~~~~~~~i~~a~~~L~s~Q~~DGgWge~~~s~~~~~~~~--~~~s~~~~TA 568 (634)
T cd02892 491 PDGSWYGRWGVCYIYGTWFALEALAAAGEDYENSPYIRKACDFLLSKQNPDGGWGESYLSYEDKSYAG--GGRSTVVQTA 568 (634)
T ss_pred CCCCccccCCCccHHHHHHHHHHHHHhCCcccCcHHHHHHHHHHHhcCCCCCCCCCccccccCcccCC--CCCCcHHHHH
Confidence 99999999999999999999999999987633568999999999999999999998776665555532 5678999999
Q ss_pred HHHHHHHHhCCCCCChHHHHHHHHHHHhcccCCCCCCCCccccccCCccccccCCchhhHHHHHHHHH
Q 026485 161 WAMMSLIHAGQMERDPTPLHRAAKLLINSQLEDGDFPQQELTGVFMENCMLHYPIYRNIFPMWALAEY 228 (238)
Q Consensus 161 ~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~~dGgw~~~~~~~~~~~~~~~~~~~~~~~~~l~aL~~~ 228 (238)
+||++|..++.. +.+.++++++||+++|+++|+|.+++++|+|...|||+|+.|+.+|||+||++|
T Consensus 569 ~AllaLl~~g~~--~~~~i~r~i~wL~~~Q~~~G~w~~~~~~g~~~~~~~~~y~~Y~~~fpl~ALg~y 634 (634)
T cd02892 569 WALLALMAAGEP--DSEAVERGIKYLLNTQLPDGDWPQEEITGVGFPNFYIRYHNYRNYFPLWALGRY 634 (634)
T ss_pred HHHHHHHHcCCC--ChHHHHHHHHHHHHcCCCCCCCCCcccccccCCCeeeccCchhhHhHHHHhhcC
Confidence 999999998875 335899999999999999999999999999777799999999999999999987
No 8
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=100.00 E-value=1.7e-32 Score=241.13 Aligned_cols=220 Identities=49% Similarity=0.918 Sum_probs=179.8
Q ss_pred CCCCCCCcccccCCCCchhhhccCcccccccccccCCCcchHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHhcc
Q 026485 1 MQSETGGVPAWEPTGAPSWLELLNPIEFLDEVIIEYDKVECTASALKAMTLFKKLYPKHRTKEVKNFIAKATKFIEDIQK 80 (238)
Q Consensus 1 ~qn~dGg~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~ 80 (238)
.|++||||+.|...+...|++. +.+.+++...+.+++++|+++|.+|..++...+.. .+++.+.++++++||.+.|+
T Consensus 129 ~Q~~dG~f~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~-~~~~~~~i~~a~~~L~~~q~ 205 (348)
T cd02889 129 MQNSNGGFAAFEPDNTYKYLEL--IPEVDGDIMIDPPYVECTGSVLEALGLFGKLYPEH-RREIDPAIRRAVKYLEREQE 205 (348)
T ss_pred hccCCCCEeeecCCccHHHHhc--CchhhcCCccCCCCcchHHHHHHHHHHhhhcCCch-HHHHHHHHHHHHHHHHHhCC
Confidence 4899999999877655555543 22234555667788999999999999988642222 22466789999999999999
Q ss_pred cCCCCcccccccchhhhHHHHHHHHHccccCccHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcccCCCCCCCCHHHHH
Q 026485 81 SDGSWYGSWGICFTYAAWFAISGLVAAKKTYSNCLAIRKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTA 160 (238)
Q Consensus 81 ~dG~w~~~~~~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~dGgw~~~~~~~~~~~y~~~~~~~~~~~~Ta 160 (238)
+||+|.+.|+..++|.|++++.+|..+|... ..+.++++++||+++|++||+|+.....+....+. ++..+++..|+
T Consensus 206 ~dG~w~~~~~~~~~y~ta~a~~aL~~~g~~~-~~~~~~~~~~~L~~~Q~~dG~w~~~~~~~~~~~~~--~~~~~~~~~Ta 282 (348)
T cd02889 206 PDGSWYGRWGVCFIYGTWFALEALAAAGEDE-NSPYVRKACDWLLSKQNPDGGWGESYESYEDPSYA--GGGRSTVVQTA 282 (348)
T ss_pred CCCCccccCCCcchHHHHHHHHHHHHcCCCc-CcHHHHHHHHHHHHccCCCCCcCCccccccccccc--CCCCCcHHHHH
Confidence 9999988887778899999999999998764 46889999999999999999998754332222222 24578999999
Q ss_pred HHHHHHHHhCCCCCChHHHHHHHHHHHhcccCCCCCCCCccccccCCccccccCCchhhHHHHHHHHH
Q 026485 161 WAMMSLIHAGQMERDPTPLHRAAKLLINSQLEDGDFPQQELTGVFMENCMLHYPIYRNIFPMWALAEY 228 (238)
Q Consensus 161 ~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~~dGgw~~~~~~~~~~~~~~~~~~~~~~~~~l~aL~~~ 228 (238)
|+|++|..++.. +.+.++++++||+++|++||+|..++.++.+++.++++++.|+++|+|+||++|
T Consensus 283 ~al~aL~~~g~~--~~~~v~~a~~wL~~~Q~~dG~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (348)
T cd02889 283 WALLALMAAGEP--DSEAVKRGVKYLLNTQQEDGDWPQEEITGVFFKNFYIRYHNYRNYFPLWALGRY 348 (348)
T ss_pred HHHHHHHhcCCC--CHHHHHHHHHHHHHhcCCCCCcCCceeeeeecceeeeccCccchHhHHHHhhcC
Confidence 999999998875 335899999999999999999999999999999999999999999999999976
No 9
>PLN03012 Camelliol C synthase
Probab=99.95 E-value=3.5e-27 Score=221.22 Aligned_cols=186 Identities=19% Similarity=0.315 Sum_probs=141.0
Q ss_pred cccccccCCCcchHHHHHHHHHHHHhhCCCcchHHH-HHHHHHHHHHHHHhcccCCCCcc-------cc-----------
Q 026485 29 LDEVIIEYDKVECTASALKAMTLFKKLYPKHRTKEV-KNFIAKATKFIEDIQKSDGSWYG-------SW----------- 89 (238)
Q Consensus 29 ~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~-~~~i~~a~~~L~~~Q~~dG~w~~-------~~----------- 89 (238)
|++....++++|+||.+|+|+..+....+....+.+ ++.+.+|++||++.|++||||.. .|
T Consensus 475 Fs~~~~gyp~sD~TAe~Lka~lll~~~~~~~~~~~~~~~~l~~av~wlL~mQn~dGGwaafe~~~~~~~le~lnp~E~F~ 554 (759)
T PLN03012 475 FSDRDHGWQASDCTAEGFKCCLLFSMIAPDIVGPKMDPEQLHDAVNILLSLQSKNGGMTAWEPAGAPEWLELLNPTEMFA 554 (759)
T ss_pred ccCCCCCCCCCCccHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHhccCCCCCEeeecCCcchHHHHhcChhhhhc
Confidence 556667789999999999987665543221111222 47999999999999999999942 11
Q ss_pred --c--ccchhhhHHHHHHHHHccccCc------cHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcccCCCCCCCCHHHH
Q 026485 90 --G--ICFTYAAWFAISGLVAAKKTYS------NCLAIRKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQT 159 (238)
Q Consensus 90 --~--~~~~~~T~~al~aL~~~g~~~~------~~~~i~~a~~~L~~~Q~~dGgw~~~~~~~~~~~y~~~~~~~~~~~~T 159 (238)
. ..++.+|+.+|.+|..+++... .++.|+||++||++.|++||||.+.|.++. .|.|
T Consensus 555 d~mid~~y~dcTa~~l~aL~~f~~~~~~~r~~~i~~~i~rAv~~L~~~Q~~DGsW~G~Wgv~y-------------~YgT 621 (759)
T PLN03012 555 DIVIEHEYNECTSSAIQALILFKQLYPDHRTEEINAFIKKAAEYIENIQMLDGSWYGNWGICF-------------TYGT 621 (759)
T ss_pred CeecCCCcccHHHHHHHHHHHHhhhCcccchhhhHHHHHHHHHHHHHhcCCCCCCcccccccC-------------CcHH
Confidence 1 1223369999999988765321 367899999999999999999999887762 4799
Q ss_pred HHHHHHHHHhCCCCCChHHHHHHHHHHHhcccCCCCCCCCccccccCCccccc-----cCCchhhHHHHHHHHHH
Q 026485 160 AWAMMSLIHAGQMERDPTPLHRAAKLLINSQLEDGDFPQQELTGVFMENCMLH-----YPIYRNIFPMWALAEYR 229 (238)
Q Consensus 160 a~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~~dGgw~~~~~~~~~~~~~~~~-----~~~~~~~~~l~aL~~~~ 229 (238)
++||.||..++....+.+.|+||++||++.|++||||+++. ..+...-|+. -..+.|.|+|+||-...
T Consensus 622 ~~aL~aL~a~g~~~~~~~~Irrav~fLls~Q~~DGGWGEs~--~Sc~~~~y~~~~~~~S~~~qTaWAl~aLi~ag 694 (759)
T PLN03012 622 WFALAGLAAAGKTFNDCEAIRKGVHFLLAAQKDNGGWGESY--LSCPKKIYIAQEGEISNLVQTAWALMGLIHAG 694 (759)
T ss_pred HHHHHHHHHhCccCCCcHHHHHHHHHHHHhcCCCCCcCCCC--CCCCCccccCCCCCCCcHHHHHHHHHHHHHcC
Confidence 99999999998865554699999999999999999999875 2333434443 23467899999998764
No 10
>PLN02993 lupeol synthase
Probab=99.95 E-value=1.5e-26 Score=217.50 Aligned_cols=186 Identities=20% Similarity=0.299 Sum_probs=141.1
Q ss_pred cccccccCCCcchHHHHHHHHHHHHhhCCCcchHHH-HHHHHHHHHHHHHhcccCCCCcc-------ccc----------
Q 026485 29 LDEVIIEYDKVECTASALKAMTLFKKLYPKHRTKEV-KNFIAKATKFIEDIQKSDGSWYG-------SWG---------- 90 (238)
Q Consensus 29 ~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~-~~~i~~a~~~L~~~Q~~dG~w~~-------~~~---------- 90 (238)
|++....++++|+||.+|+|+..+.+..+....+.+ ++.+.+|++||++.|++||||.. .|.
T Consensus 475 Fs~~~~gyp~sDdTAe~lka~l~l~~~~~~~~~~~~~~~~l~~av~wlL~mQn~dGG~aafe~~~~~~~le~ln~ae~f~ 554 (763)
T PLN02993 475 LSDRDHGWQVSDCTAEALKCCMLLSMMPADVVGQKIDPEQLYDSVNLLLSLQSENGGVTAWEPVRAYKWLELLNPTDFFA 554 (763)
T ss_pred CccCCCCCCcCCchHHHHHHHHHHhhCccccccccchHHHHHHHHHHHHhhccCCCCEEeeeCCCchhHHHcCCHHHhhc
Confidence 556667899999999999987776654222112223 47999999999999999999953 111
Q ss_pred -----ccchhhhHHHHHHHHHccccC------ccHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcccCCCCCCCCHHHH
Q 026485 91 -----ICFTYAAWFAISGLVAAKKTY------SNCLAIRKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQT 159 (238)
Q Consensus 91 -----~~~~~~T~~al~aL~~~g~~~------~~~~~i~~a~~~L~~~Q~~dGgw~~~~~~~~~~~y~~~~~~~~~~~~T 159 (238)
..++++|+.+|.+|..++... ..++.++||++||++.|++||+|.+.|.++ .+|.|
T Consensus 555 ~~miD~~~~dcT~~vl~aL~~~~~~~p~~r~~ei~~~i~rAv~yL~~~Q~~DGSW~G~Wgv~-------------y~YgT 621 (763)
T PLN02993 555 NTMVEREYVECTSAVIQALVLFKQLYPDHRTKEIIKSIEKAVQFIESKQTPDGSWYGNWGIC-------------FIYAT 621 (763)
T ss_pred CcccCCCCcCHHHHHHHHHHHhcccCcchhhhhHHHHHHHHHHHHHHhcCCCCCcccccccc-------------cCcHH
Confidence 234568999999999886522 125789999999999999999998876544 46899
Q ss_pred HHHHHHHHHhCCCCCChHHHHHHHHHHHhcccCCCCCCCCccccccCCccccc-----cCCchhhHHHHHHHHHH
Q 026485 160 AWAMMSLIHAGQMERDPTPLHRAAKLLINSQLEDGDFPQQELTGVFMENCMLH-----YPIYRNIFPMWALAEYR 229 (238)
Q Consensus 160 a~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~~dGgw~~~~~~~~~~~~~~~~-----~~~~~~~~~l~aL~~~~ 229 (238)
++||.||..+|....+.+.|+||++||+++|++||||+++. ..+...-|.. -..+.|.|+|+||....
T Consensus 622 ~~aL~aL~a~G~~~~~~~~IrrAv~fLls~Q~~DGGWGEs~--~S~~~~~y~~~~~~~St~~qTAwAllaL~~aG 694 (763)
T PLN02993 622 WFALGGLAAAGKTYNDCLAMRKGVHFLLTIQRDDGGWGESY--LSCPEQRYIPLEGNRSNLVQTAWAMMGLIHAG 694 (763)
T ss_pred HHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCCCCCcCcCc--CcCCCcccccCCCCCCchhhHHHHHHHHHHcC
Confidence 99999999998875554699999999999999999999864 2222333332 23467999999998763
No 11
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=99.93 E-value=5.9e-25 Score=206.06 Aligned_cols=179 Identities=24% Similarity=0.255 Sum_probs=131.5
Q ss_pred cccCCCcchHHHHHHHHHHHHhhCCCcchH-HHHHHHHHHHHHHHHhcccCCCCcc-------cc---------------
Q 026485 33 IIEYDKVECTASALKAMTLFKKLYPKHRTK-EVKNFIAKATKFIEDIQKSDGSWYG-------SW--------------- 89 (238)
Q Consensus 33 ~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~-~~~~~i~~a~~~L~~~Q~~dG~w~~-------~~--------------- 89 (238)
...++++|+||.+|+||..+... +....+ ..++.+.++++||+++|++||+|.. .|
T Consensus 367 ~~~~pdsD~Ta~~L~Al~~~~~~-~~~~~~~~~~~~l~~av~~Ll~~Qn~dGGw~~y~~~~~~~~l~~~~~~~~f~~~~~ 445 (634)
T TIGR03463 367 DHGWPVSDCTAEALSASLVLEPL-GLNPEERVPQARLQDAVEFILSRQNEDGGFGTYERQRGPRVLELLNPSEMFSTCMT 445 (634)
T ss_pred CCCCCccccHHHHHHHHHHHhhc-CCcccccccHHHHHHHHHHHHHhcCCCCCEeccCCCCcHHHHhcCChHHhhccccc
Confidence 34678899999999999886532 111111 1237899999999999999999962 22
Q ss_pred cccchhhhHHHHHHHHHccccCc------cHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcccCCCCCCCCHHHHHHHH
Q 026485 90 GICFTYAAWFAISGLVAAKKTYS------NCLAIRKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAM 163 (238)
Q Consensus 90 ~~~~~~~T~~al~aL~~~g~~~~------~~~~i~~a~~~L~~~Q~~dGgw~~~~~~~~~~~y~~~~~~~~~~~~Ta~al 163 (238)
+..++..|+.+|.+|..++.... ..++++||++||++.|++||+|.+.++. ...+.|+++|
T Consensus 446 d~~~~d~Ta~~l~aL~~~~~~~~~~~~~~i~~ai~rav~~L~~~Q~~dGsW~g~Wg~-------------~~~Y~T~~al 512 (634)
T TIGR03463 446 DVSYVECTSSCLQALAAWRKHHPHVPDGRITRAISRGVRFLRSRQREDGSFPGSWGV-------------CFTYGTFHGV 512 (634)
T ss_pred CCCcCcHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHhcCCCCCccccCCC-------------CCcHHHHHHH
Confidence 12356689999999998765431 2467999999999999999999765432 3457899999
Q ss_pred HHHHHhCCCCCChHHHHHHHHHHHhcccCCCCCCCCccccccCCcccc---ccCCchhhHHHHHHHHH
Q 026485 164 MSLIHAGQMERDPTPLHRAAKLLINSQLEDGDFPQQELTGVFMENCML---HYPIYRNIFPMWALAEY 228 (238)
Q Consensus 164 ~aL~~~g~~~~~~~~v~~a~~~L~~~Q~~dGgw~~~~~~~~~~~~~~~---~~~~~~~~~~l~aL~~~ 228 (238)
.||..+|....+ +.++||++||+++|++||||+..... +....|+ +-..+.|.++|.||...
T Consensus 513 ~aL~~~G~~~~~-~~i~rA~~~Ll~~Q~~DGgWg~~~~s--~~~~~y~~~~~S~~~~TA~Al~aL~~~ 577 (634)
T TIGR03463 513 MGLRAAGASPDD-MALQRAAAWLRSYQRADGGWGEVYES--CLQARYVEGKQSQAVMTSWALLALAEA 577 (634)
T ss_pred HHHHHcCCCcCc-HHHHHHHHHHHHccCCCCCccCccCc--cccccccCCCCCcHHHHHHHHHHHHHc
Confidence 999998875533 48999999999999999999865321 1111121 12345688999999764
No 12
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation.
Probab=99.93 E-value=2.2e-24 Score=185.76 Aligned_cols=182 Identities=21% Similarity=0.249 Sum_probs=132.2
Q ss_pred CCCCCCCcccccCC--CCchhhhccCcccccccccccCCCcchHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHh
Q 026485 1 MQSETGGVPAWEPT--GAPSWLELLNPIEFLDEVIIEYDKVECTASALKAMTLFKKLYPKHRTKEVKNFIAKATKFIEDI 78 (238)
Q Consensus 1 ~qn~dGg~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~~a~~~L~~~ 78 (238)
+|++||||+.|... .++.|| ||+|+++|..++...+ . .+..|+++++||+++
T Consensus 61 ~q~~dGsf~~w~~~~~~~~~wl---------------------Ta~v~~~L~~a~~~~~-v----~~~~i~ra~~wL~~~ 114 (292)
T cd02897 61 YKHSDGSYSAFGESDKSGSTWL---------------------TAFVLKSFAQARPFIY-I----DENVLQQALTWLSSH 114 (292)
T ss_pred ccCCCCCeecccCCCCCcchhh---------------------HHHHHHHHHHHhccCC-C----CHHHHHHHHHHHHHh
Confidence 69999999998543 445555 9999999999874222 1 147999999999999
Q ss_pred cccCCCCcccc----------cccchhhhHHHHHHHHHccccCccHHHHHHHHHHHHhcc--------------------
Q 026485 79 QKSDGSWYGSW----------GICFTYAAWFAISGLVAAKKTYSNCLAIRKATDFLLKIQ-------------------- 128 (238)
Q Consensus 79 Q~~dG~w~~~~----------~~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q-------------------- 128 (238)
|++||+|.... ....+..|++++.+|.+.|... .++.++||++||.+.+
T Consensus 115 Q~~dG~f~~~~~~~~~~~~~~~~~~~~~TA~vl~aL~~~g~~~-~~~~i~~a~~yL~~~~~~~~~~y~~al~a~AL~~~~ 193 (292)
T cd02897 115 QKSNGCFREVGRVFHKAMQGGVDDEVALTAYVLIALLEAGLPS-ERPVVEKALSCLEAALDSISDPYTLALAAYALTLAG 193 (292)
T ss_pred cCCCCCCCCCCcccChhhcCCCCCCcchHHHHHHHHHhcCCcc-ccHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHcC
Confidence 99999996311 0123457999999999988653 4566777777776642
Q ss_pred ------------------ccCCCCCCCCCCCCCCcccCCCCCCCCHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcc
Q 026485 129 ------------------CEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMERDPTPLHRAAKLLINSQ 190 (238)
Q Consensus 129 ------------------~~dGgw~~~~~~~~~~~y~~~~~~~~~~~~Ta~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q 190 (238)
+.+|.|+..+.......|.+ .+..+++..|+|+|++|...+. + +.+.+.++++||.++|
T Consensus 194 ~~~~~~~~~~l~~~~~~~~~~~~W~~~~~~~~~~~~~~-~~~~~~ve~TAyaLlall~~~~-~-~~~~~~~~v~WL~~~q 270 (292)
T cd02897 194 SEKRPEALKKLDELAISEDGTKHWSRPPPSEEGPSYYW-QAPSAEVEMTAYALLALLSAGG-E-DLAEALPIVKWLAKQR 270 (292)
T ss_pred CccHHHHHHHHHHHHhccCCCCCCCcCCCcccccccCC-CCCcchHHHHHHHHHHHHHcCC-c-cHhHHHHHHHHHHHcC
Confidence 33566765422211111221 1235689999999999998874 2 2247889999999999
Q ss_pred cCCCCCCCCccccccCCccccccCCchhhHHHHHHHHH
Q 026485 191 LEDGDFPQQELTGVFMENCMLHYPIYRNIFPMWALAEY 228 (238)
Q Consensus 191 ~~dGgw~~~~~~~~~~~~~~~~~~~~~~~~~l~aL~~~ 228 (238)
+++|||..++. |+++|+||++|
T Consensus 271 ~~~Ggf~sTQd----------------t~~al~AL~~y 292 (292)
T cd02897 271 NSLGGFSSTQD----------------TVVALQALAKY 292 (292)
T ss_pred CCCCCcccHHH----------------HHHHHHHHHcC
Confidence 99999998873 89999999986
No 13
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement. The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.
Probab=99.92 E-value=1.3e-24 Score=187.50 Aligned_cols=181 Identities=22% Similarity=0.293 Sum_probs=134.7
Q ss_pred CCCCCCCcccccCCCCchhhhccCcccccccccccCCCcchHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHhcc
Q 026485 1 MQSETGGVPAWEPTGAPSWLELLNPIEFLDEVIIEYDKVECTASALKAMTLFKKLYPKHRTKEVKNFIAKATKFIEDIQK 80 (238)
Q Consensus 1 ~qn~dGg~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~ 80 (238)
+|++||||+.|....++.|| ||+|+++|..+++.. . . .++.|+++++||+++|+
T Consensus 64 ~q~~dGsf~~w~~~~~s~wl---------------------TA~v~~~l~~a~~~~-~-v---~~~~l~~a~~wL~~~Q~ 117 (297)
T cd02896 64 YRKPDGSYAAWKNRPSSTWL---------------------TAFVVKVFSLARKYI-P-V---DQNVICGSVNWLISNQK 117 (297)
T ss_pred ccCCCCCccCCCCCCcchhh---------------------HHHHHHHHHHHHHcC-C-C---CHHHHHHHHHHHHhcCC
Confidence 68999999999887888887 999999999987532 1 1 14789999999999999
Q ss_pred cCCCCcccc--------c-----ccchhhhHHHHHHHHHccccC-----c------------------------------
Q 026485 81 SDGSWYGSW--------G-----ICFTYAAWFAISGLVAAKKTY-----S------------------------------ 112 (238)
Q Consensus 81 ~dG~w~~~~--------~-----~~~~~~T~~al~aL~~~g~~~-----~------------------------------ 112 (238)
+||+|.... + ...+..|++|+.+|.+.+... .
T Consensus 118 ~dG~f~e~~~~~~~~m~gg~~~~~~~~~lTA~vl~aL~~~~~~~~~~~~~~~~~i~rA~~yL~~~~~~~~~~Y~~Al~ay 197 (297)
T cd02896 118 PDGSFQEPSPVIHREMTGGVEGSEGDVSLTAFVLIALQEARSICPPEVQNLDQSIRKAISYLENQLPNLQRPYALAITAY 197 (297)
T ss_pred CCCeeCCCCCccChhccCCccccCCCccchHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHhcccCCChHHHHHHHH
Confidence 999996432 1 123457999999999875421 0
Q ss_pred -----cHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcccCCCCCCCCHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHH
Q 026485 113 -----NCLAIRKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMERDPTPLHRAAKLLI 187 (238)
Q Consensus 113 -----~~~~i~~a~~~L~~~Q~~dGgw~~~~~~~~~~~y~~~~~~~~~~~~Ta~al~aL~~~g~~~~~~~~v~~a~~~L~ 187 (238)
..+...++.++|.+.|+.||+|++.+.. ....+.+..+...+++.|||||++|+..+.. +.+.++++||.
T Consensus 198 ALal~~~~~~~~a~~~L~~~~~~d~~~~~~~~~-~~~~~~~~~~~~~~vE~TAYALLall~~~~~----~~a~~iv~WL~ 272 (297)
T cd02896 198 ALALADSPLSHAANRKLLSLAKRDGNGWYWWTI-DSPYWPVPGPSAITVETTAYALLALLKLGDI----EYANPIARWLT 272 (297)
T ss_pred HHHHcCChhhHHHHHHHHHHhhhCCCcceeccC-cCccCCCCCCchhhhHHHHHHHHHHHhcCCc----hhHHHHHHHHH
Confidence 1123456667777778889998765432 1111221112234799999999999988743 26888999999
Q ss_pred hcccCCCCCCCCccccccCCccccccCCchhhHHHHHHHHH
Q 026485 188 NSQLEDGDFPQQELTGVFMENCMLHYPIYRNIFPMWALAEY 228 (238)
Q Consensus 188 ~~Q~~dGgw~~~~~~~~~~~~~~~~~~~~~~~~~l~aL~~~ 228 (238)
++|+.+|||...+. |+++|+||++|
T Consensus 273 ~qr~~~Ggf~sTQd----------------Tvval~AL~~y 297 (297)
T cd02896 273 EQRNYGGGFGSTQD----------------TVVALQALAEY 297 (297)
T ss_pred hcCCCCCCeehHHH----------------HHHHHHHHhcC
Confidence 99999999998873 89999999976
No 14
>COG1657 SqhC Squalene cyclase [Lipid metabolism]
Probab=99.92 E-value=1.8e-25 Score=200.69 Aligned_cols=222 Identities=31% Similarity=0.586 Sum_probs=195.2
Q ss_pred CCCCCCCcccccCCCCchhhhccCcccccccccccCCCcchHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHhcc
Q 026485 1 MQSETGGVPAWEPTGAPSWLELLNPIEFLDEVIIEYDKVECTASALKAMTLFKKLYPKHRTKEVKNFIAKATKFIEDIQK 80 (238)
Q Consensus 1 ~qn~dGg~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~ 80 (238)
|||.+|||..|+.++...|++.+++.+.+ .+.+++.+|+|+.++.+|..+....+..+ ...|+++++||++.|.
T Consensus 293 ~q~~~g~~a~~e~~~~~a~~~~L~~~~~~--~~~~~s~adct~~~~~~l~a~~~yl~~~~----~~~i~~a~e~LL~~Q~ 366 (517)
T COG1657 293 MQNKLGGLAVYEDRNLHAWLRLLPPAEVK--AMVDPSTADCTHRVVLALAALNAYLEAYD----GQPIERALEWLLSDQE 366 (517)
T ss_pred cccccCceeeeccccccHHHhhCCHhhcc--ccccCCcccCCCccHHHHhhhhhcccccc----CCcccHHHhhhhhhcc
Confidence 79999999999999999999999999866 78899999999999999998775433111 2459999999999999
Q ss_pred cCCCCcccccccchhhhHHHHHHHHHccccCccHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcccCCCCCCCCHHHHH
Q 026485 81 SDGSWYGSWGICFTYAAWFAISGLVAAKKTYSNCLAIRKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTA 160 (238)
Q Consensus 81 ~dG~w~~~~~~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~dGgw~~~~~~~~~~~y~~~~~~~~~~~~Ta 160 (238)
++|+|.+.|+.+.+|.|+.++.+|...+....+...+++++.||..+|++||||++.+..+....|.. .+.+....|+
T Consensus 367 ~~GsW~g~w~v~~iY~~s~a~~~l~~~g~~~~~~~~v~~~~~~l~~~~~~~~Gw~e~~~~~~~~~~~~--t~~sl~~~~~ 444 (517)
T COG1657 367 PDGSWYGRWGVCYIYGTSGALSALALVGETDENEVLVRKLISWLVSKQMPDGGWGEAKEAISDPVYTG--TESSLLVQTN 444 (517)
T ss_pred ccCceeeEEEEEEEEehhhhhhhhhccCccccchHHHHHHHHHhhhccccCCCccccccccccccccc--ccchhhcchh
Confidence 99999999999999999999999999998766788999999999999999999999876665555554 3567788999
Q ss_pred HHHHHHHHhCCCCCChHHHHHHHHHHHhcccCCCCCCCCccccccCCccccccCCchhhHHHHHHHHHHHhc
Q 026485 161 WAMMSLIHAGQMERDPTPLHRAAKLLINSQLEDGDFPQQELTGVFMENCMLHYPIYRNIFPMWALAEYRSRL 232 (238)
Q Consensus 161 ~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~~dGgw~~~~~~~~~~~~~~~~~~~~~~~~~l~aL~~~~~~~ 232 (238)
||+.++..+... +.+.+++++.++.+.|.++|.|......|.|+.++++.|+.|..++|+.+|++|....
T Consensus 445 wal~~~~~a~~~--~~~~i~~~~~~~~~~~~~~g~~~~~~~eg~~~~~~~~~~~~~~~~~p~~~lg~y~~~~ 514 (517)
T COG1657 445 WALIALLTALEP--NQEAIKPGINLLVSDQEPDGSWREAEREGGFNCNFAIGYPYYLAYFPIIALGRYGGQY 514 (517)
T ss_pred HHHHHHHHhccc--chhhhcccccccccCcCCCCccccceecccCCCCcceeeeeEEeecCchhhccccccc
Confidence 999999988776 3457999999999999999999999999999999999999999999999999997544
No 15
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=99.91 E-value=2.2e-23 Score=195.35 Aligned_cols=179 Identities=18% Similarity=0.190 Sum_probs=131.9
Q ss_pred ccccccCCCcchHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHhcccCCCCcccc-c------------------
Q 026485 30 DEVIIEYDKVECTASALKAMTLFKKLYPKHRTKEVKNFIAKATKFIEDIQKSDGSWYGSW-G------------------ 90 (238)
Q Consensus 30 ~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~~dG~w~~~~-~------------------ 90 (238)
++....+|++|+|+.+|+||...+. +. .+..++.+++|++||+++|++||+|...- .
T Consensus 371 ~~~~~~~pd~ddTa~~L~AL~~~~~--~~--~~~~~~~i~ra~~wLl~~Qn~dGgw~af~~~~~~~~l~~~~f~d~~~~~ 446 (635)
T TIGR01507 371 QFDNVYYPDVDDTAVVVWALNGLRL--PD--ERRRRDAMTKAFRWIAGMQSSNGGWGAFDVDNTSDLLNHIPFCDFGAVT 446 (635)
T ss_pred CCCCCCCCCchhHHHHHHHHHHcCC--Cc--cccchHHHHHHHHHHHHhcCCCCCEecccCCcchhHHhcCCcccccccc
Confidence 3334457889999999999988631 21 12345799999999999999999995310 0
Q ss_pred -ccchhhhHHHHHHHHHccccCccHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcccCCCCCCCCHHHHHHHHHHHHHh
Q 026485 91 -ICFTYAAWFAISGLVAAKKTYSNCLAIRKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHA 169 (238)
Q Consensus 91 -~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~dGgw~~~~~~~~~~~y~~~~~~~~~~~~Ta~al~aL~~~ 169 (238)
...+..|+.++++|...+... .++.|+||++||++.|++||+|.+.+.. ..++.|+.+|.+|...
T Consensus 447 D~~~~d~Ta~~l~al~~~g~~~-~~~~i~rav~~L~~~Q~~dG~W~g~wg~-------------~~~Y~T~~al~aL~~~ 512 (635)
T TIGR01507 447 DPPTADVTARVLECLGSFGYDD-AWPVIERAVEYLKREQEPDGSWFGRWGV-------------NYLYGTGAVLSALKAV 512 (635)
T ss_pred CCCCccHHHHHHHHHHHhCCCc-hhHHHHHHHHHHHHccCCCCCCccCCCC-------------ccccHHHHHHHHHHHc
Confidence 112336999999999987654 4789999999999999999999554432 3468999999999988
Q ss_pred CCCCCChHHHHHHHHHHHhcccCCCCCCCCcccc---ccCCccccccCCchhhHHHHHHHHHH
Q 026485 170 GQMERDPTPLHRAAKLLINSQLEDGDFPQQELTG---VFMENCMLHYPIYRNIFPMWALAEYR 229 (238)
Q Consensus 170 g~~~~~~~~v~~a~~~L~~~Q~~dGgw~~~~~~~---~~~~~~~~~~~~~~~~~~l~aL~~~~ 229 (238)
+.... .+.|+||++||+++|++||||++....- .+.+.. .-....|.++|.||-...
T Consensus 513 g~~~~-~~~i~rAv~wL~~~Q~~DGGWge~~~sy~~~~~~g~g--~s~~s~TA~AL~AL~~ag 572 (635)
T TIGR01507 513 GIDTR-EPYIQKALAWLESHQNPDGGWGEDCRSYEDPAYAGKG--ASTASQTAWALIALIAAG 572 (635)
T ss_pred CCCcc-cHHHHHHHHHHHHhcCCCCCCCCCCcccccccccCCC--CCcHHHHHHHHHHHHHhC
Confidence 76543 3589999999999999999999753211 122111 113335889999997654
No 16
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=99.89 E-value=4.7e-22 Score=187.45 Aligned_cols=202 Identities=21% Similarity=0.280 Sum_probs=139.8
Q ss_pred CCCCCcccccCCC-CchhhhccCcccccccccccCCCcchHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHhccc
Q 026485 3 SETGGVPAWEPTG-APSWLELLNPIEFLDEVIIEYDKVECTASALKAMTLFKKLYPKHRTKEVKNFIAKATKFIEDIQKS 81 (238)
Q Consensus 3 n~dGg~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~~ 81 (238)
+++|.|..+.+.. ...|- |++....++++|+||.+|+||..++.. +........+.++++++||+++|++
T Consensus 345 ~~~gdw~~~~~~~~~GGW~--------fs~~~~~~pd~d~Ta~~l~AL~~~~~~-~~~~~~~~~~~i~~Av~wLl~~Qn~ 415 (634)
T cd02892 345 DNPGDWKVKYRHLRKGGWA--------FSTANQGYPDSDDTAEALKALLRLQEL-PPFGEKVSRERLYDAVDWLLGMQNS 415 (634)
T ss_pred CCCCchhhhCCCCCCCCCC--------CCCCCCCCCCcCchHHHHHHHHHhhcc-CCcchhhHHHHHHHHHHHHHhccCC
Confidence 4666666554331 22231 444455678899999999999998754 2111122358999999999999999
Q ss_pred CCCCcccc-c---------------------ccchhhhHHHHHHHHHccccCcc-----HHHHHHHHHHHHhccccCCCC
Q 026485 82 DGSWYGSW-G---------------------ICFTYAAWFAISGLVAAKKTYSN-----CLAIRKATDFLLKIQCEDGGW 134 (238)
Q Consensus 82 dG~w~~~~-~---------------------~~~~~~T~~al~aL~~~g~~~~~-----~~~i~~a~~~L~~~Q~~dGgw 134 (238)
||+|.... . ..++..|+.+|.+|..++..... ++.++||++||+++|++||+|
T Consensus 416 dGgf~~y~~~~~~~~~~~~~p~e~~g~~~~d~~~~~~Ta~~l~aL~~~~~~~~~~r~~i~~~i~rAv~~L~~~Q~~DGsW 495 (634)
T cd02892 416 NGGFAAFEPDNTYHWLENLNPFEDFGDIMIDPPYVECTGSVLEALGLFGKLYPGHRREIDPAIRRAVKYLLREQEPDGSW 495 (634)
T ss_pred CCCEeeecCCCchhhHhhcCchhhhcccccCCCCcchHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHccCCCCCc
Confidence 99995210 0 12334699999999998765422 368999999999999999999
Q ss_pred CCCCCCCCCCcccCCCCCCCCHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcccCCCCCCCCccccccCCccccc--
Q 026485 135 GESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMERDPTPLHRAAKLLINSQLEDGDFPQQELTGVFMENCMLH-- 212 (238)
Q Consensus 135 ~~~~~~~~~~~y~~~~~~~~~~~~Ta~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~~dGgw~~~~~~~~~~~~~~~~-- 212 (238)
.+.+. ...++.|+++|.+|..++......+.++++++||+++|++||||++... .|....|..
T Consensus 496 ~g~wg-------------~~~~Y~T~~al~AL~~~G~~~~~~~~i~~a~~~L~s~Q~~DGgWge~~~--s~~~~~~~~~~ 560 (634)
T cd02892 496 YGRWG-------------VCYIYGTWFALEALAAAGEDYENSPYIRKACDFLLSKQNPDGGWGESYL--SYEDKSYAGGG 560 (634)
T ss_pred cccCC-------------CccHHHHHHHHHHHHHhCCcccCcHHHHHHHHHHHhcCCCCCCCCCccc--cccCcccCCCC
Confidence 76543 2357899999999999887522335899999999999999999986531 121111111
Q ss_pred -cCCchhhHHHHHHHHH
Q 026485 213 -YPIYRNIFPMWALAEY 228 (238)
Q Consensus 213 -~~~~~~~~~l~aL~~~ 228 (238)
-....|.++|.+|-..
T Consensus 561 ~s~~~~TA~AllaLl~~ 577 (634)
T cd02892 561 RSTVVQTAWALLALMAA 577 (634)
T ss_pred CCcHHHHHHHHHHHHHc
Confidence 1223467777777543
No 17
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=99.87 E-value=2.3e-21 Score=181.71 Aligned_cols=181 Identities=17% Similarity=0.210 Sum_probs=126.6
Q ss_pred cccccccCCCcchHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHhcccCCCCccc---c----------------
Q 026485 29 LDEVIIEYDKVECTASALKAMTLFKKLYPKHRTKEVKNFIAKATKFIEDIQKSDGSWYGS---W---------------- 89 (238)
Q Consensus 29 ~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~~dG~w~~~---~---------------- 89 (238)
|++....+|++|.|+.++.++..+... +. +..++.++++++||+++|++||+|... .
T Consensus 355 fs~~~~~~PdvdDta~~~la~~l~~~~-~~---~~~~~~l~~a~~~Ll~~Qn~dGGw~ay~~~~~~~~l~~l~p~e~f~d 430 (621)
T TIGR01787 355 FSFLNCGYPDVDDTAVVALKAVLLLQE-DE---HVKRDRLRDAVNWILGMQSSNGGFAAYDPDNTGEWLELLNPSEVFGD 430 (621)
T ss_pred CccCCCCCCCchhHHHHHHHHHHhhcC-cc---cccHHHHHHHHHHHHHHcCCCCCEeeeccccchHHHHHhcchhhhcc
Confidence 444445667777777777776554321 11 113478999999999999999999531 0
Q ss_pred ---cccchhhhHHHHHHHHHccccC-ccHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcccCCCCCCCCHHHHHHHHHH
Q 026485 90 ---GICFTYAAWFAISGLVAAKKTY-SNCLAIRKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMS 165 (238)
Q Consensus 90 ---~~~~~~~T~~al~aL~~~g~~~-~~~~~i~~a~~~L~~~Q~~dGgw~~~~~~~~~~~y~~~~~~~~~~~~Ta~al~a 165 (238)
+...+..|+.+|++|..++... ...+.++||++||+++|++||+|.+.+.. ..++.|+++|.+
T Consensus 431 ~~~d~~~~~~T~~~l~aL~~~~~r~~~~~~~i~rAl~~L~~~Q~~DGsw~g~wg~-------------~y~YgT~~al~a 497 (621)
T TIGR01787 431 IMIDPPYVDVTARVIQALGAFGHRADEIRNVLERALEYLRREQRADGSWFGRWGV-------------NYTYGTGFVLSA 497 (621)
T ss_pred ccccCCCCchHHHHHHHHHHhcCccHhHHHHHHHHHHHHHHhcCCCCCCcccCCC-------------CCchhHHHHHHH
Confidence 0112247999999999887421 24678999999999999999999765432 335789999999
Q ss_pred HHHhCCCCCChHHHHHHHHHHHhcccCCCCCCCCccc---cccCCccccccCCchhhHHHHHHHHH
Q 026485 166 LIHAGQMERDPTPLHRAAKLLINSQLEDGDFPQQELT---GVFMENCMLHYPIYRNIFPMWALAEY 228 (238)
Q Consensus 166 L~~~g~~~~~~~~v~~a~~~L~~~Q~~dGgw~~~~~~---~~~~~~~~~~~~~~~~~~~l~aL~~~ 228 (238)
|..++....+.+.++||++||+++|++||||++.... ..|.+.. .-....|.++|.||-..
T Consensus 498 L~~~G~~~~~~~~i~rA~~~L~~~Q~~DGGWge~~~s~~~~~y~~~~--~S~~s~Ta~AL~AL~~a 561 (621)
T TIGR01787 498 LAAAGRTYRNCPEVQKACDWLLSRQMPDGGWGEDCFSYEDPSYVGSG--GSTPSQTGWALMALIAA 561 (621)
T ss_pred HHHhCCcccCCHHHHHHHHHHHhhcCCCCCCCcCCccccccccCCCC--CCCHHHHHHHHHHHHHc
Confidence 9998875433358999999999999999999865421 1122211 11223578888888654
No 18
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=99.86 E-value=5.1e-21 Score=160.98 Aligned_cols=182 Identities=24% Similarity=0.340 Sum_probs=128.7
Q ss_pred CCCCCCCcccc-cCCCCchhhhccCcccccccccccCCCcchHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHhc
Q 026485 1 MQSETGGVPAW-EPTGAPSWLELLNPIEFLDEVIIEYDKVECTASALKAMTLFKKLYPKHRTKEVKNFIAKATKFIEDIQ 79 (238)
Q Consensus 1 ~qn~dGg~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q 79 (238)
+|++||||+.| ....+++|| ||+|++.|..+.+.... .+..|+++++||+++|
T Consensus 9 y~~~DGsfs~f~~~~~~s~WL---------------------TAfv~k~f~~a~~~i~v-----d~~~i~~a~~wL~~~Q 62 (246)
T PF07678_consen 9 YRRSDGSFSAFSSDSPSSTWL---------------------TAFVVKVFSQAKKYIFV-----DENVICRAVKWLISQQ 62 (246)
T ss_dssp TB-TTSSBBSSTTTSSBBHHH---------------------HHHHHHHHHHHTTTS-C-----EHHHHHHHHHHHHHHB
T ss_pred CCCCCCCeeccccCCcccHHH---------------------HHHHHHHHHHHHHhhcC-----CHHHHHHHHHHHHHhh
Confidence 47899999999 666888888 99999999998765221 1478999999999999
Q ss_pred ccCCCCccccc----------ccchhhhHHHHHHHHHcccc-----CccHHHHHHHHHHHHhc-----------------
Q 026485 80 KSDGSWYGSWG----------ICFTYAAWFAISGLVAAKKT-----YSNCLAIRKATDFLLKI----------------- 127 (238)
Q Consensus 80 ~~dG~w~~~~~----------~~~~~~T~~al~aL~~~g~~-----~~~~~~i~~a~~~L~~~----------------- 127 (238)
++||+|...-. ...+..|++|+.||.+.+.. ......++||++||.+.
T Consensus 63 ~~dG~F~e~~~~~~~~~~g~~~~~~~lTA~VliAL~e~~~~~~~~~~~~~~~i~kA~~~L~~~~~~~~~~Y~lAl~aYAL 142 (246)
T PF07678_consen 63 QPDGSFEEDGPVIHREMQGGVEDDIALTAYVLIALLEAGSLCDSEKPEYENAINKALNYLERHLDNIQDPYTLALVAYAL 142 (246)
T ss_dssp ETTSEB--SSS-SSGGGSGGGTHHHHHHHHHHHHHHHCHCCHTTTHHCHHHHHHHHHHHHHHHHGCTSSHHHHHHHHHHH
T ss_pred cCCCccccCCCccccccCCCCCCCeeehHHHHHHHHhhhhhccccchhhHHHHHHHHHHHHHhccccCCHHHHHHHHHHH
Confidence 99999953111 12345799999999999822 12568899999999764
Q ss_pred -------------------cccCCC---CCCCCCCCCCCcccCCCCCCCCHHHHHHHHHHHHHhCCCCCChHHHHHHHHH
Q 026485 128 -------------------QCEDGG---WGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMERDPTPLHRAAKL 185 (238)
Q Consensus 128 -------------------Q~~dGg---w~~~~~~~~~~~y~~~~~~~~~~~~Ta~al~aL~~~g~~~~~~~~v~~a~~~ 185 (238)
...+|+ |...........+.. .+...++..|+|||+++...+ +.+.+.+.++|
T Consensus 143 ~la~~~~~~~~~~~~L~~~a~~~~~~~~W~~~~~~~~~~~~~~-~~~s~~vEtTaYaLLa~l~~~----~~~~~~~iv~W 217 (246)
T PF07678_consen 143 ALAGDSPQASKLLNKLNSMATTEGGLRYWSSDESSSSSSSPWS-RGSSLDVETTAYALLALLKRG----DLEEASPIVRW 217 (246)
T ss_dssp HHTTTCHHHHHHHHHHHCHCEETTTTCEE-SSSSSSSSSSTTT--SHHHHHHHHHHHHHHHHHHT----CHHHHHHHHHH
T ss_pred HhhcccchHHHHHHHHHHhhhhccccCcccCCccccccccccc-ccchHHHHHHHHHHHHHHhcc----cHHHHHHHHHH
Confidence 111222 222111000000000 011246899999999999883 33478899999
Q ss_pred HHhcccCCCCCCCCccccccCCccccccCCchhhHHHHHHHHHH
Q 026485 186 LINSQLEDGDFPQQELTGVFMENCMLHYPIYRNIFPMWALAEYR 229 (238)
Q Consensus 186 L~~~Q~~dGgw~~~~~~~~~~~~~~~~~~~~~~~~~l~aL~~~~ 229 (238)
|.++|+..|||...+. |+++|+||..|.
T Consensus 218 L~~qr~~~Ggf~STQd----------------TvvaL~AL~~Ya 245 (246)
T PF07678_consen 218 LISQRNSGGGFGSTQD----------------TVVALQALAEYA 245 (246)
T ss_dssp HHHCTTTTSSTSSHHH----------------HHHHHHHHHHHH
T ss_pred HHHhcCCCCccCcHHH----------------HHHHHHHHHHHh
Confidence 9999999999998873 899999999996
No 19
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=99.86 E-value=1.5e-20 Score=165.31 Aligned_cols=149 Identities=25% Similarity=0.312 Sum_probs=115.1
Q ss_pred CCCcchHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHhcccCCCCcccc--------------------cccchh
Q 026485 36 YDKVECTASALKAMTLFKKLYPKHRTKEVKNFIAKATKFIEDIQKSDGSWYGSW--------------------GICFTY 95 (238)
Q Consensus 36 ~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~~dG~w~~~~--------------------~~~~~~ 95 (238)
++++++|+.++++|..++...+. ..+...+.|.++++||+++|++||+|.... ....+.
T Consensus 88 ~~~~~~Ta~~l~al~~~~~~~~~-~~~~~~~~i~~a~~~L~~~Q~~dG~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (348)
T cd02889 88 YPDSDDTAEALKALLRLQKKPPD-GKKVSRERLYDAVDWLLSMQNSNGGFAAFEPDNTYKYLELIPEVDGDIMIDPPYVE 166 (348)
T ss_pred CCCCCChHHHHHHHHHhhccCcc-cchhhHHHHHHHHHHHHHhccCCCCEeeecCCccHHHHhcCchhhcCCccCCCCcc
Confidence 45567899999999998754221 122345899999999999999999995311 112345
Q ss_pred hhHHHHHHHHHccccCcc-----HHHHHHHHHHHHhccccCCCCCCCCCCCCCCcccCCCCCCCCHHHHHHHHHHHHHhC
Q 026485 96 AAWFAISGLVAAKKTYSN-----CLAIRKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAG 170 (238)
Q Consensus 96 ~T~~al~aL~~~g~~~~~-----~~~i~~a~~~L~~~Q~~dGgw~~~~~~~~~~~y~~~~~~~~~~~~Ta~al~aL~~~g 170 (238)
.|+++|.+|..++..... .+.++|+++||++.|++||+|...+. .+..+.|++++.+|..++
T Consensus 167 ~Ta~~l~aL~~~~~~~~~~~~~~~~~i~~a~~~L~~~q~~dG~w~~~~~-------------~~~~y~ta~a~~aL~~~g 233 (348)
T cd02889 167 CTGSVLEALGLFGKLYPEHRREIDPAIRRAVKYLEREQEPDGSWYGRWG-------------VCFIYGTWFALEALAAAG 233 (348)
T ss_pred hHHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHhCCCCCCccccCC-------------CcchHHHHHHHHHHHHcC
Confidence 799999999998865321 26899999999999999999964321 235688999999999887
Q ss_pred CCCCChHHHHHHHHHHHhcccCCCCCCCC
Q 026485 171 QMERDPTPLHRAAKLLINSQLEDGDFPQQ 199 (238)
Q Consensus 171 ~~~~~~~~v~~a~~~L~~~Q~~dGgw~~~ 199 (238)
.... .+.++++++||+++|++||+|+..
T Consensus 234 ~~~~-~~~~~~~~~~L~~~Q~~dG~w~~~ 261 (348)
T cd02889 234 EDEN-SPYVRKACDWLLSKQNPDGGWGES 261 (348)
T ss_pred CCcC-cHHHHHHHHHHHHccCCCCCcCCc
Confidence 6532 358999999999999999999864
No 20
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C ....
Probab=99.84 E-value=5.4e-21 Score=141.63 Aligned_cols=111 Identities=26% Similarity=0.416 Sum_probs=87.3
Q ss_pred HHHHHHhcccCCCCcccccccchhhhHHHHHHHHHccccCccHHHHHHH--HHHHHhccccCCCCCCCCCCCCCCcccCC
Q 026485 72 TKFIEDIQKSDGSWYGSWGICFTYAAWFAISGLVAAKKTYSNCLAIRKA--TDFLLKIQCEDGGWGESYRSCPNKKYIPL 149 (238)
Q Consensus 72 ~~~L~~~Q~~dG~w~~~~~~~~~~~T~~al~aL~~~g~~~~~~~~i~~a--~~~L~~~Q~~dGgw~~~~~~~~~~~y~~~ 149 (238)
|+||+++|++||+|...+...++..|++++.+|..++.... ++++ ++||+++|++||+|...+.
T Consensus 1 v~~L~~~Q~~dGgw~~~~~~~~~~~T~~al~aL~~~g~~~~----~~~~~~~~~L~~~q~~dGg~~~~~~---------- 66 (113)
T PF13249_consen 1 VDWLLSRQNPDGGWGGFGGPSDVWDTAFALLALAALGEEPD----RDRAAAVEWLLSQQNPDGGWGSNPD---------- 66 (113)
T ss_dssp HHHHHHHB-TTSSBBSSTS-BEHHHHHHHHHHHHHHTSHHC----HHHHHHHHHHHHHB-TTSGBBSSTT----------
T ss_pred CHhhHHHcCCCCCCcCCCCCCCHHHHHHHHHHHHHhCCccc----HHHHHHHHHHHHhCCCCCCccCCCC----------
Confidence 68999999999999755556788899999999999997642 4555 9999999999999987431
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcccCCCCCCC
Q 026485 150 DGNRSNLVQTAWAMMSLIHAGQMERDPTPLHRAAKLLINSQLEDGDFPQ 198 (238)
Q Consensus 150 ~~~~~~~~~Ta~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~~dGgw~~ 198 (238)
+..+++..|+++|.+|...+.... .+.++++++||+++|++||||++
T Consensus 67 -~~~~~~~~t~~~l~~l~~~~~~~~-~~~~~~a~~~l~~~Q~~dGg~~y 113 (113)
T PF13249_consen 67 -GGPPDVYTTYVALAALELLGRPDD-EEAVRKAVDWLLSCQNPDGGWGY 113 (113)
T ss_dssp -TT-BSHHHHHHHHHHHHHHT-GGC-HTTHCCHHHHHHHTB-TTSSB-S
T ss_pred -CCCccHHHHHHHHHHHHHcCCCcc-cHHHHHHHHHHHHhcCCCCCCCc
Confidence 335678999999999988877653 23799999999999999999974
No 21
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement. Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.
Probab=99.84 E-value=1.3e-19 Score=153.90 Aligned_cols=185 Identities=30% Similarity=0.440 Sum_probs=143.3
Q ss_pred CCCCCCCcccccCCCCchhhhccCcccccccccccCCCcchHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHhcc
Q 026485 1 MQSETGGVPAWEPTGAPSWLELLNPIEFLDEVIIEYDKVECTASALKAMTLFKKLYPKHRTKEVKNFIAKATKFIEDIQK 80 (238)
Q Consensus 1 ~qn~dGg~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~ 80 (238)
.|++||||..+...... .....+++..|+++|.+|..++.... .+.++++++||.++|+
T Consensus 116 ~q~~dG~~~~~~~~~~~--------------~~~~~~~~~~t~~al~aL~~~~~~~~-------~~~~~~~~~~l~~~q~ 174 (300)
T cd00688 116 LQNEDGGFREDGPGNHR--------------IGGDESDVRLTAYALIALALLGKLDP-------DPLIEKALDYLLSCQN 174 (300)
T ss_pred ccCCCCCeeeecCCCCc--------------ccCCCCcccHHHHHHHHHHHcCCCCC-------cHHHHHHHHHHHHHhc
Confidence 48999999966543110 12245667889999999999875311 3579999999999999
Q ss_pred cCCCCcccccccchhhhHHHHHHHHHccccCccHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcccCCCCCCCCHHHHH
Q 026485 81 SDGSWYGSWGICFTYAAWFAISGLVAAKKTYSNCLAIRKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTA 160 (238)
Q Consensus 81 ~dG~w~~~~~~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~dGgw~~~~~~~~~~~y~~~~~~~~~~~~Ta 160 (238)
+||+| ..+...+++.|+.++.+|..++.. ..+.++++++||+++|.++|+|...... ....+++..|.
T Consensus 175 ~~g~~-~~~~~~~~~~t~~~~~aL~~~~~~--~~~~~~~~~~~L~~~q~~~g~~~~~~~~---------~~~~~~~~~~~ 242 (300)
T cd00688 175 YDGGF-GPGGESHGYGTACAAAALALLGDL--DSPDAKKALRWLLSRQRPDGGWGEGRDR---------TNKLSDSCYTE 242 (300)
T ss_pred CCCCc-CCCccccHHHHHHHHHHHHHcCCc--chHHHHHHHHHHHHhcCCCCCcCccccC---------CCCcCchHHHH
Confidence 99999 777777889999999999998875 3577999999999999999999865320 12356788899
Q ss_pred HHHHHHHHhCCCCCChHHHHHHHHHHHhcccCCCCCCCCccccccCCccccccCCchhhHHHHHHHHH
Q 026485 161 WAMMSLIHAGQMERDPTPLHRAAKLLINSQLEDGDFPQQELTGVFMENCMLHYPIYRNIFPMWALAEY 228 (238)
Q Consensus 161 ~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~~dGgw~~~~~~~~~~~~~~~~~~~~~~~~~l~aL~~~ 228 (238)
+++.+|...+... +.+.++++++||+++|+++|+|..... .....+.++++|.||+.|
T Consensus 243 ~~~~aL~~~~~~~-~~~~~~~~~~~L~~~q~~~G~w~~~~~---------~~~~~~~t~~al~aL~~~ 300 (300)
T cd00688 243 WAAYALLALGKLG-DLEDAEKLVKWLLSQQNEDGGFSSKPG---------KSYDTQHTVFALLALSLY 300 (300)
T ss_pred HHHHHHHHHhhhc-CcccHHHHHHHHHhccCCCCCcCcCCC---------CCCcchhhHHHHHHHhcC
Confidence 9999998876531 223789999999999999999997532 233456689999999864
No 22
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits re
Probab=99.82 E-value=5.3e-19 Score=151.84 Aligned_cols=156 Identities=26% Similarity=0.287 Sum_probs=123.4
Q ss_pred CC-CCCCCcccccCCCCchhhhccCcccccccccccCCCcchHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHhc
Q 026485 1 MQ-SETGGVPAWEPTGAPSWLELLNPIEFLDEVIIEYDKVECTASALKAMTLFKKLYPKHRTKEVKNFIAKATKFIEDIQ 79 (238)
Q Consensus 1 ~q-n~dGg~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q 79 (238)
+| |+||||+..+. +.+++..|..++.+|..++.. ... ...++++++||.++|
T Consensus 59 ~q~~~~Ggf~~~~~---------------------~~~~~~~T~~al~~l~llg~~--~~~----~~~~~~~~~~l~~~q 111 (286)
T cd02890 59 CQVNEDGGFGGGPG---------------------QDPHLASTYAAVLSLAILGDD--ALS----RIDREKIYKFLSSLQ 111 (286)
T ss_pred hhcCCCCCCCCCCC---------------------CCccHHHHHHHHHHHHHcCcc--ccc----hhhHHHHHHHHHHhc
Confidence 47 99999995422 234456799999999998751 010 134678999999999
Q ss_pred ccCCCCccc-ccccchhhhHHHHHHHHHccccCccHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcccCCCCCCCCHHH
Q 026485 80 KSDGSWYGS-WGICFTYAAWFAISGLVAAKKTYSNCLAIRKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQ 158 (238)
Q Consensus 80 ~~dG~w~~~-~~~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~dGgw~~~~~~~~~~~y~~~~~~~~~~~~ 158 (238)
++||+|... +++.+++.|..++.+|..++... +..++++++||+++|++||||+..+ +.++++..
T Consensus 112 ~~dGgf~~~~~~~~d~~~ty~al~~l~ll~~~~--~~~~~~~~~~l~~~Q~~dGGf~~~~------------~~es~~~~ 177 (286)
T cd02890 112 NPDGSFRGDLGGEVDTRFVYCALSILSLLNILT--DIDKEKLIDYILSCQNYDGGFGGVP------------GAESHGGY 177 (286)
T ss_pred CCCCCcccCCCCCchHHHHHHHHHHHHHhCCch--hhhHHHHHHHHHHhCCCCCCcCCCC------------CCCCCccH
Confidence 999999653 45667888888999999888763 5678999999999999999998752 44677889
Q ss_pred HHHHHHHHHHhCCCCCChHHHHHHHHHHHhcccCCC-CCCCC
Q 026485 159 TAWAMMSLIHAGQMERDPTPLHRAAKLLINSQLEDG-DFPQQ 199 (238)
Q Consensus 159 Ta~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~~dG-gw~~~ 199 (238)
|++|+.+|..++... ...+++.++||+++|+++| ||.-.
T Consensus 178 t~~av~sL~~l~~~~--~~~~~~~~~~L~~~q~~~ggGf~g~ 217 (286)
T cd02890 178 TFCAVASLALLGRLD--LIDKERLLRWLVERQLASGGGFNGR 217 (286)
T ss_pred hHHHHHHHHHcCCCc--ccCHHHHHHHHHHhCCCCCCCcCCC
Confidence 999999999998764 2379999999999999987 77543
No 23
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltr
Probab=99.81 E-value=1.6e-18 Score=148.98 Aligned_cols=138 Identities=28% Similarity=0.381 Sum_probs=108.4
Q ss_pred chHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHhcccCCCCcc-cccccchhhhHHHHHHHHHccccCccHHHHH
Q 026485 40 ECTASALKAMTLFKKLYPKHRTKEVKNFIAKATKFIEDIQKSDGSWYG-SWGICFTYAAWFAISGLVAAKKTYSNCLAIR 118 (238)
Q Consensus 40 d~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~~dG~w~~-~~~~~~~~~T~~al~aL~~~g~~~~~~~~i~ 118 (238)
-.|..++.+|..++.. . .+++.++++++||.++|++||+|.+ .+++.++..|..++.+|..++.. ....++
T Consensus 80 ~~t~~a~~~L~ll~~~-~-----~i~~~~~~~~~~i~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~--~~i~~~ 151 (287)
T cd02894 80 LSTLSAIQILALYDLL-N-----KIDENKEKIAKFIKGLQNEDGSFSGDKWGEVDTRFSYCAVLCLTLLGKL--DLIDVD 151 (287)
T ss_pred HHHHHHHHHHHHhhhh-h-----hccHHHHHHHHHHHHHcCCCCCeecCCCCCchHHHHHHHHHHHHHhCCc--chhhHH
Confidence 3488888888876532 1 1344689999999999999999976 36666666677777777777654 234579
Q ss_pred HHHHHHHhccccCCCCCCCCCCCCCCcccCCCCCCCCHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcccCCCCCCC
Q 026485 119 KATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMERDPTPLHRAAKLLINSQLEDGDFPQ 198 (238)
Q Consensus 119 ~a~~~L~~~Q~~dGgw~~~~~~~~~~~y~~~~~~~~~~~~Ta~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~~dGgw~~ 198 (238)
++++||+++|++||||++.+ +..+++-.|.+|+.+|...+..... .+++.++||+++|.++|||..
T Consensus 152 ~~~~~l~~~q~~dGGF~~~~------------~~es~~~~t~cavasL~llg~~~~~--~~~~~~~~L~~~q~~~GGf~g 217 (287)
T cd02894 152 KAVDYLLSCYNFDGGFGCRP------------GAESHAGQIFCCVGALAILGSLDLI--DRDRLGWWLCERQLPSGGLNG 217 (287)
T ss_pred HHHHHHHHcCCCCCCcCCCC------------CCCCchhHHHHHHHHHHHcCccccc--CHHHHHHHHHHhCCCCCCcCC
Confidence 99999999999999998752 4567888999999999999876432 588999999999999999964
Q ss_pred C
Q 026485 199 Q 199 (238)
Q Consensus 199 ~ 199 (238)
.
T Consensus 218 r 218 (287)
T cd02894 218 R 218 (287)
T ss_pred C
Confidence 3
No 24
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement. Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.
Probab=99.81 E-value=2.2e-18 Score=146.21 Aligned_cols=157 Identities=27% Similarity=0.326 Sum_probs=124.8
Q ss_pred CCCCCCCcccccCCCCchhhhccCcccccccccccCCCcchHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHhcc
Q 026485 1 MQSETGGVPAWEPTGAPSWLELLNPIEFLDEVIIEYDKVECTASALKAMTLFKKLYPKHRTKEVKNFIAKATKFIEDIQK 80 (238)
Q Consensus 1 ~qn~dGg~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~ 80 (238)
+|++||||+.+... ..+++..|++++++|..++... ....+.++++++||+++|+
T Consensus 64 ~q~~dG~~~~~~~~--------------------~~~~~~~T~~~~~~l~~~~~~~-----~~~~~~~~~~~~~l~~~q~ 118 (300)
T cd00688 64 YQLSDGGFSGWGGN--------------------DYPSLWLTAYALKALLLAGDYI-----AVDRIDLARALNWLLSLQN 118 (300)
T ss_pred ccCCCCCccCCCCC--------------------CCcchHhHHHHHHHHHHcCCcc-----ccCHHHHHHHHHHHHHccC
Confidence 58999999965432 0345567999999999886531 1124689999999999999
Q ss_pred cCCCCccccc--------ccchhhhHHHHHHHHHccccCccHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcccCCCCC
Q 026485 81 SDGSWYGSWG--------ICFTYAAWFAISGLVAAKKTYSNCLAIRKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGN 152 (238)
Q Consensus 81 ~dG~w~~~~~--------~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~dGgw~~~~~~~~~~~y~~~~~~ 152 (238)
+||+|..... ......|++++.+|..++... ..+.++++++||.++|++||+| .. ..
T Consensus 119 ~dG~~~~~~~~~~~~~~~~~~~~~t~~al~aL~~~~~~~-~~~~~~~~~~~l~~~q~~~g~~-~~-------------~~ 183 (300)
T cd00688 119 EDGGFREDGPGNHRIGGDESDVRLTAYALIALALLGKLD-PDPLIEKALDYLLSCQNYDGGF-GP-------------GG 183 (300)
T ss_pred CCCCeeeecCCCCcccCCCCcccHHHHHHHHHHHcCCCC-CcHHHHHHHHHHHHHhcCCCCc-CC-------------Cc
Confidence 9999964221 345668999999999998764 2678999999999999999999 21 33
Q ss_pred CCCHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcccCCCCCCCC
Q 026485 153 RSNLVQTAWAMMSLIHAGQMERDPTPLHRAAKLLINSQLEDGDFPQQ 199 (238)
Q Consensus 153 ~~~~~~Ta~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~~dGgw~~~ 199 (238)
.++++.|++++.+|...+.. ..+.++++++||+++|+++|+|...
T Consensus 184 ~~~~~~t~~~~~aL~~~~~~--~~~~~~~~~~~L~~~q~~~g~~~~~ 228 (300)
T cd00688 184 ESHGYGTACAAAALALLGDL--DSPDAKKALRWLLSRQRPDGGWGEG 228 (300)
T ss_pred cccHHHHHHHHHHHHHcCCc--chHHHHHHHHHHHHhcCCCCCcCcc
Confidence 57789999999999988765 2348999999999999999999865
No 25
>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism]
Probab=99.80 E-value=3e-19 Score=162.78 Aligned_cols=190 Identities=22% Similarity=0.299 Sum_probs=147.7
Q ss_pred ccccccccccCCCcchHHHHHHHHHHHHhhCCCcchHHHH-HHHHHHHHHHHHhcccCCCCcc-------cc--------
Q 026485 26 IEFLDEVIIEYDKVECTASALKAMTLFKKLYPKHRTKEVK-NFIAKATKFIEDIQKSDGSWYG-------SW-------- 89 (238)
Q Consensus 26 ~~~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~-~~i~~a~~~L~~~Q~~dG~w~~-------~~-------- 89 (238)
+-+|+|....++.+|+||.++++...++.....+..+.++ +.+-.+++.|+..|..+|++.. .|
T Consensus 471 ~wtfS~~d~gw~vsDctaEal~~~lll~~~~~~~vg~~~~~erL~dav~~Ll~lq~~~Gg~~~~e~~r~~~wLE~lnp~E 550 (760)
T KOG0497|consen 471 GWTFSDRDQGWPVSDCTAEALKCCLLLSSMPSEIVGEKIDVERLYDAVDVLLYLQSENGGFAAYEPARGYEWLELLNPAE 550 (760)
T ss_pred cccccccccceeeccccHHHHHHHHHhcCCChhhccCCCCHHHHHHHHHHHHhhhhccCccccccccchHHHHHhcCchh
Confidence 3347888899999999999999988887653333333343 6889999999999999999842 11
Q ss_pred -----c--ccchhhhHHHHHHHHHccccC------ccHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcccCCCCCCCCH
Q 026485 90 -----G--ICFTYAAWFAISGLVAAKKTY------SNCLAIRKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNL 156 (238)
Q Consensus 90 -----~--~~~~~~T~~al~aL~~~g~~~------~~~~~i~~a~~~L~~~Q~~dGgw~~~~~~~~~~~y~~~~~~~~~~ 156 (238)
. ..++.+|..++.+|....+.. +....|.+|++||.+.|.+||+|.++|++|+ .
T Consensus 551 ~f~~~~ve~~yvEcT~s~I~aL~~F~k~~p~~r~~Ei~~~i~~av~~ie~~Q~~DGSWyGsWgvCF-------------t 617 (760)
T KOG0497|consen 551 VFGDIMVEYEYVECTSSAIQALVYFHKLFPGHRKKEIEKSIEKAVEFIEKLQLPDGSWYGSWGVCF-------------T 617 (760)
T ss_pred cccceeeeecccccHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHHHHHcCCCCCcccchhhHHH-------------H
Confidence 0 123458999999999877643 2567899999999999999999999988873 6
Q ss_pred HHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcccCCCCCCCCccccccCCcccccc-----CCchhhHHHHHHHHHHH
Q 026485 157 VQTAWAMMSLIHAGQMERDPTPLHRAAKLLINSQLEDGDFPQQELTGVFMENCMLHY-----PIYRNIFPMWALAEYRS 230 (238)
Q Consensus 157 ~~Ta~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~~dGgw~~~~~~~~~~~~~~~~~-----~~~~~~~~l~aL~~~~~ 230 (238)
+.|.+++.+|.++|+...+..+++||+.||++.|+++|||+++..+. +..-|+.. ....+.+++++|..+.+
T Consensus 618 Y~t~Fa~~gl~aaGkty~nc~~irka~~Fll~~Q~~~GGWgEs~lsc--p~~~Yi~~~gn~s~vv~T~wAlm~Li~~~q 694 (760)
T KOG0497|consen 618 YGTWFALRGLAAAGKTYENCEAIRKACDFLLSKQNPDGGWGESYLSC--PEKRYIPLEGNKSNVVQTAWALMALIMAGQ 694 (760)
T ss_pred HHHHHhcchhhhcchhhhccHHHHHHHHHHHhhhcccCCCccccccC--ccccccccccccccchhHHHHHHHHHhcCC
Confidence 89999999999999988777899999999999999999999875332 11113322 23357899999987744
No 26
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional
Probab=99.80 E-value=2.7e-18 Score=149.18 Aligned_cols=163 Identities=23% Similarity=0.341 Sum_probs=121.2
Q ss_pred CCCCCCCcccccCCCCchhhhccCcccccccccccCCCcchHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHhcc
Q 026485 1 MQSETGGVPAWEPTGAPSWLELLNPIEFLDEVIIEYDKVECTASALKAMTLFKKLYPKHRTKEVKNFIAKATKFIEDIQK 80 (238)
Q Consensus 1 ~qn~dGg~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~ 80 (238)
+|++||||+.++... +....|..++.+|..+++. . ...+++.++||.+.|+
T Consensus 68 cq~~~GGF~~~~~~~---------------------~h~~~Ty~al~~L~ll~~~-~-------~id~~~~~~~l~s~Q~ 118 (316)
T PLN03201 68 CQHESGGFGGNTGHD---------------------PHILYTLSAVQILALFDRL-D-------LLDADKVASYVAGLQN 118 (316)
T ss_pred hcCCCCCcCCCCCCc---------------------ccHHHHHHHHHHHHHhhhh-h-------hhhHHHHHHHHHHhcC
Confidence 489999999765321 1223588889988887532 1 1236679999999999
Q ss_pred cCCCCcc-cccccchhhhHHHHHHHHHccccCccHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcccCCCCCCCCHHHH
Q 026485 81 SDGSWYG-SWGICFTYAAWFAISGLVAAKKTYSNCLAIRKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQT 159 (238)
Q Consensus 81 ~dG~w~~-~~~~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~dGgw~~~~~~~~~~~y~~~~~~~~~~~~T 159 (238)
+||+|.+ .+++.++..|..++.+|..++... ...++++++||+++|++||||+..+ +.+++...|
T Consensus 119 ~dGgF~~~~~ge~D~r~ty~a~a~l~LL~~~~--~i~~~~~~~~i~scq~~dGGF~~~p------------~~esh~g~T 184 (316)
T PLN03201 119 EDGSFSGDEWGEIDTRFSYCALCCLSLLKRLD--KINVEKAVDYIVSCKNFDGGFGCTP------------GGESHAGQI 184 (316)
T ss_pred CCCCccCCCCCCccHHHHHHHHHHHHHhCccc--hhHHHHHHHHHHHhcCCCCCcCCCC------------CCCCcccee
Confidence 9999976 566677766777777777776542 3457999999999999999998753 446667789
Q ss_pred HHHHHHHHHhCCCCCChHHHHHHHHHHHhcccCCCCCCCCccccccCCccc
Q 026485 160 AWAMMSLIHAGQMERDPTPLHRAAKLLINSQLEDGDFPQQELTGVFMENCM 210 (238)
Q Consensus 160 a~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~~dGgw~~~~~~~~~~~~~~ 210 (238)
.+|+.+|...+..... ..++.++||+.+|..+|||.-.. +..++.||
T Consensus 185 ~caiaaL~llg~~~~~--d~~~l~~wL~~rQ~~~GGf~grp--~k~~D~cy 231 (316)
T PLN03201 185 FCCVGALAITGSLHHV--DKDLLGWWLCERQVKSGGLNGRP--EKLPDVCY 231 (316)
T ss_pred hHHHHHHHHcCccccC--CHHHHHHHHHHhCCCCCCcCCCC--CCCCchHH
Confidence 9999999988765322 35677999999999999998542 34566664
No 27
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltr
Probab=99.74 E-value=7.2e-17 Score=138.73 Aligned_cols=153 Identities=17% Similarity=0.224 Sum_probs=115.2
Q ss_pred hHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHhcccCCCCcccc-cccchhhhHHHHHHHHHccccCccHHHHHH
Q 026485 41 CTASALKAMTLFKKLYPKHRTKEVKNFIAKATKFIEDIQKSDGSWYGSW-GICFTYAAWFAISGLVAAKKTYSNCLAIRK 119 (238)
Q Consensus 41 ~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~~dG~w~~~~-~~~~~~~T~~al~aL~~~g~~~~~~~~i~~ 119 (238)
.|..++.+|..+++. . ...++++++||.++|++||||.... .+.++-.|+.++.+|..++... ...+++
T Consensus 131 ~ty~a~~~l~ll~~~-~-------~i~~~~~~~~l~~~q~~dGGF~~~~~~es~~~~t~cavasL~llg~~~--~~~~~~ 200 (287)
T cd02894 131 FSYCAVLCLTLLGKL-D-------LIDVDKAVDYLLSCYNFDGGFGCRPGAESHAGQIFCCVGALAILGSLD--LIDRDR 200 (287)
T ss_pred HHHHHHHHHHHhCCc-c-------hhhHHHHHHHHHHcCCCCCCcCCCCCCCCchhHHHHHHHHHHHcCccc--ccCHHH
Confidence 377788888777542 1 1357999999999999999997543 4456667888999999998753 234889
Q ss_pred HHHHHHhccccCCCCCCCCCCCCCCcccCCCCCCCCHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcc-cCCCCCCC
Q 026485 120 ATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMERDPTPLHRAAKLLINSQ-LEDGDFPQ 198 (238)
Q Consensus 120 a~~~L~~~Q~~dGgw~~~~~~~~~~~y~~~~~~~~~~~~Ta~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q-~~dGgw~~ 198 (238)
+++||+++|+++|||.+.+ +..+++..|.|++.+|...+.... ...++..+||+++| .++|||..
T Consensus 201 ~~~~L~~~q~~~GGf~gr~------------~k~~D~~ysf~~~a~l~~l~~~~~--~~~~~l~~~l~~~q~~~~GGf~~ 266 (287)
T cd02894 201 LGWWLCERQLPSGGLNGRP------------EKLPDVCYSWWVLSSLKIIGRLHW--INKNKLKNFILACQDEEDGGFAD 266 (287)
T ss_pred HHHHHHHhCCCCCCcCCCC------------CCCCchhHhhHHHHHHHHhccccc--cCHHHHHHHHHHhcCCCCCCcCC
Confidence 9999999999999997653 446788999999999988876532 25788999999999 47899975
Q ss_pred CccccccCCccccccCCchhhHHHHHHH
Q 026485 199 QELTGVFMENCMLHYPIYRNIFPMWALA 226 (238)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~l~aL~ 226 (238)
.. +..++.++ +.++|-+|.
T Consensus 267 ~p--~~~~D~~h-------t~~~l~~Ls 285 (287)
T cd02894 267 RP--GNMVDVFH-------TFFGLAGLS 285 (287)
T ss_pred CC--CCCCChhH-------HHHHHHHHH
Confidence 42 22333332 667777765
No 28
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C ....
Probab=99.73 E-value=8.4e-18 Score=124.43 Aligned_cols=102 Identities=30% Similarity=0.387 Sum_probs=76.0
Q ss_pred CCCCCCCcccccCCCCchhhhccCcccccccccccCCCcchHHHHHHHHHHHHhhCCCcchHHHHHHHHH--HHHHHHHh
Q 026485 1 MQSETGGVPAWEPTGAPSWLELLNPIEFLDEVIIEYDKVECTASALKAMTLFKKLYPKHRTKEVKNFIAK--ATKFIEDI 78 (238)
Q Consensus 1 ~qn~dGg~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~~--a~~~L~~~ 78 (238)
.||+||||+.+ . ..+++..|+.+|.+|..++... .+++ +++||+++
T Consensus 7 ~Q~~dGgw~~~-~---------------------~~~~~~~T~~al~aL~~~g~~~----------~~~~~~~~~~L~~~ 54 (113)
T PF13249_consen 7 RQNPDGGWGGF-G---------------------GPSDVWDTAFALLALAALGEEP----------DRDRAAAVEWLLSQ 54 (113)
T ss_dssp HB-TTSSBBSS-T---------------------S-BEHHHHHHHHHHHHHHTSHH----------CHHHHHHHHHHHHH
T ss_pred HcCCCCCCcCC-C---------------------CCCCHHHHHHHHHHHHHhCCcc----------cHHHHHHHHHHHHh
Confidence 39999999965 2 1344567999999999987541 1333 59999999
Q ss_pred cccCCCCcccc--cccchhhhHHHHHHHHHccccCccHHHHHHHHHHHHhccccCCCCC
Q 026485 79 QKSDGSWYGSW--GICFTYAAWFAISGLVAAKKTYSNCLAIRKATDFLLKIQCEDGGWG 135 (238)
Q Consensus 79 Q~~dG~w~~~~--~~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~dGgw~ 135 (238)
|++||+|.... ...+++.|+.++.+|..++... ..+.++|+++||+++|++||||+
T Consensus 55 q~~dGg~~~~~~~~~~~~~~t~~~l~~l~~~~~~~-~~~~~~~a~~~l~~~Q~~dGg~~ 112 (113)
T PF13249_consen 55 QNPDGGWGSNPDGGPPDVYTTYVALAALELLGRPD-DEEAVRKAVDWLLSCQNPDGGWG 112 (113)
T ss_dssp B-TTSGBBSSTTTT-BSHHHHHHHHHHHHHHT-GG-CHTTHCCHHHHHHHTB-TTSSB-
T ss_pred CCCCCCccCCCCCCCccHHHHHHHHHHHHHcCCCc-ccHHHHHHHHHHHHhcCCCCCCC
Confidence 99999997644 2346778889999998888764 35789999999999999999996
No 29
>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits r
Probab=99.72 E-value=2.6e-16 Score=136.27 Aligned_cols=176 Identities=20% Similarity=0.211 Sum_probs=125.2
Q ss_pred CCCCCcccccCCCCchhhhccCcccccccccccCCCcchHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHhcccC
Q 026485 3 SETGGVPAWEPTGAPSWLELLNPIEFLDEVIIEYDKVECTASALKAMTLFKKLYPKHRTKEVKNFIAKATKFIEDIQKSD 82 (238)
Q Consensus 3 n~dGg~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~~d 82 (238)
++||||+....... +. .....+.+++-.|..++.+|..++.... ....++.++||.++|++|
T Consensus 67 ~~~GgF~~~~~~~~--------~~---~~~~~~~~~l~~ty~Al~~L~lL~~~~~-------~idr~~i~~~l~~~q~~d 128 (307)
T cd02895 67 LPRGGFRGSSTLGL--------PG---TASKYDTGNLAMTYFALLSLLILGDDLS-------RVDRKAILNFLSKLQLPD 128 (307)
T ss_pred CCCCCCCCCCCCcc--------cc---ccccCCcccHHHHHHHHHHHHHhCCchh-------hhhHHHHHHHHHHhCCCC
Confidence 89999996542100 00 1112345566679999999998864211 124678899999999999
Q ss_pred CCCccc----ccccchhhhHHHHHHHHHccccCccHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcccCCCCCCCCHHH
Q 026485 83 GSWYGS----WGICFTYAAWFAISGLVAAKKTYSNCLAIRKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQ 158 (238)
Q Consensus 83 G~w~~~----~~~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~dGgw~~~~~~~~~~~y~~~~~~~~~~~~ 158 (238)
|+|.+. +++.+...|..++.+|..++.........++.++||+++|+.||||+..+ +.+++.-.
T Consensus 129 GgF~~~~~~~~~e~d~r~ty~Av~~l~lL~~~~~~~~d~~~li~~l~s~Q~~dGGF~~~~------------~~Esh~g~ 196 (307)
T cd02895 129 GSFGSVLDSEGGENDMRFCYCAVAICYMLDDWSEEDIDKEKLIDYIKSSQSYDGGFGQGP------------GLESHGGS 196 (307)
T ss_pred CCccCCcCCcCCCccHHHHHHHHHHHHHhCCCccccccHHHHHHHHHHccCCCCCccCCC------------CCCccccH
Confidence 999765 45667777888888888887643112347899999999999999998653 33556668
Q ss_pred HHHHHHHHHHhCCCCC-ChHHHHHHHHHHHhcccCCCCCCCCccccccCCccc
Q 026485 159 TAWAMMSLIHAGQMER-DPTPLHRAAKLLINSQLEDGDFPQQELTGVFMENCM 210 (238)
Q Consensus 159 Ta~al~aL~~~g~~~~-~~~~v~~a~~~L~~~Q~~dGgw~~~~~~~~~~~~~~ 210 (238)
|.+|+.+|...+.... ....+++.++||+++|+.+|||.-.. +..++.||
T Consensus 197 Tyca~asL~lL~~~~~~~~~~~~~l~~wL~~rQ~~~GGF~gr~--~k~~D~cy 247 (307)
T cd02895 197 TFCAIASLSLLGKLEELSEKFLERLKRWLVHRQVSGTGFNGRP--NKPADTCY 247 (307)
T ss_pred HHHHHHHHHHcCCccccccccHHHHHHHHHHhcCCCCCcCCCC--CCCCccch
Confidence 9999999988876531 12368899999999999999997542 33455553
No 30
>PLN02710 farnesyltranstransferase subunit beta
Probab=99.72 E-value=1.7e-16 Score=141.83 Aligned_cols=179 Identities=17% Similarity=0.181 Sum_probs=127.0
Q ss_pred CCCCCCCcccccCCCCchhhhccCcccccccccccCCCcchHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHhcc
Q 026485 1 MQSETGGVPAWEPTGAPSWLELLNPIEFLDEVIIEYDKVECTASALKAMTLFKKLYPKHRTKEVKNFIAKATKFIEDIQK 80 (238)
Q Consensus 1 ~qn~dGg~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~ 80 (238)
.|++||||+..+. .. +....|..+|.+|..++.. .... ....++.++||.++|+
T Consensus 104 cQ~~dGGFgg~pg-----~~----------------~hl~~TY~Av~~L~iLg~~-~~l~----~Idr~~l~~fl~s~q~ 157 (439)
T PLN02710 104 CQDPNGGYGGGPG-----QL----------------PHLATTYAAVNTLVTIGGE-RALS----SINREKLYTFLLRMKD 157 (439)
T ss_pred hcCCCcCCCCCCC-----CC----------------ccHHHHHHHHHHHHHcCCc-hhhc----ccCHHHHHHHHHHcCC
Confidence 3899999995332 11 2234588899999988742 1110 1235778999999999
Q ss_pred cCCCCcc-cccccchhhhHHHHHHHHHccccCccHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcccCCCCCCCCHHHH
Q 026485 81 SDGSWYG-SWGICFTYAAWFAISGLVAAKKTYSNCLAIRKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQT 159 (238)
Q Consensus 81 ~dG~w~~-~~~~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~dGgw~~~~~~~~~~~y~~~~~~~~~~~~T 159 (238)
+||+|.. .+++.++..|..++..|..++.. ....+++.++||+++|+.||||+..+ +.+++.-.|
T Consensus 158 ~dGgF~~~~~gE~D~R~tYcAlail~LL~~l--~~~~~e~~~~~I~scQ~~dGGF~g~P------------~~EaH~gyT 223 (439)
T PLN02710 158 PSGGFRMHDGGEMDVRACYTAISVASLLNIL--DDELVKGVGDYILSCQTYEGGIGGEP------------GAEAHGGYT 223 (439)
T ss_pred CCCCcccCCCCCCCcCCcHHHHHHHHHhCcC--chhhHHHHHHHHHHhCCCCCCCCCCC------------CCCCchHHH
Confidence 9999965 33444555555566556556654 24568899999999999999998753 446777889
Q ss_pred HHHHHHHHHhCCCCCChHHHHHHHHHHHhcccCCCCCCCCccccccCCccccccCCchhhHHHHHHHHHHH
Q 026485 160 AWAMMSLIHAGQMERDPTPLHRAAKLLINSQLEDGDFPQQELTGVFMENCMLHYPIYRNIFPMWALAEYRS 230 (238)
Q Consensus 160 a~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~~dGgw~~~~~~~~~~~~~~~~~~~~~~~~~l~aL~~~~~ 230 (238)
.+++.+|...+.... ..+++.++||+.+|..+|||.-.. ...++.|| +.|++-+|.-..+
T Consensus 224 fcavAsL~LLg~l~~--id~~~l~~WL~~rQ~~~GGF~GR~--nKl~D~CY-------SfW~~a~L~lL~~ 283 (439)
T PLN02710 224 FCGLAAMILINEVDR--LDLPSLINWVVFRQGVEGGFQGRT--NKLVDGCY-------SFWQGGVFALLQQ 283 (439)
T ss_pred HHHHHHHHHcCCccc--cCHHHHHHHHHHhcCcCCCcCCCC--CCCCCchh-------hHHHHHHHHHHHH
Confidence 999999998876543 258889999999999999998543 34666776 4566666655443
No 31
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=99.72 E-value=2.6e-18 Score=126.65 Aligned_cols=108 Identities=34% Similarity=0.490 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhcccCCCCcccccccchhhhHHHHHHHHHccccCccHHHHHHHHHHHHhccccCCCCCCCCCCCCCCccc
Q 026485 68 IAKATKFIEDIQKSDGSWYGSWGICFTYAAWFAISGLVAAKKTYSNCLAIRKATDFLLKIQCEDGGWGESYRSCPNKKYI 147 (238)
Q Consensus 68 i~~a~~~L~~~Q~~dG~w~~~~~~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~dGgw~~~~~~~~~~~y~ 147 (238)
|+++++||++.|++||+|...+. ...+.|+.++.+|...+.. ...++|+|+++||+++|++||+|+...
T Consensus 1 i~~~~~~l~~~Q~~dG~W~~~~~-~~~~~t~~~~~al~~~~~~-~~~~ai~ka~~~l~~~Q~~dG~w~~~~--------- 69 (109)
T PF13243_consen 1 IKRAAEWLLSQQNPDGSWGYNWG-SDVFVTAALILALAAAGDA-AVDEAIKKAIDWLLSHQNPDGGWGYSG--------- 69 (109)
T ss_dssp -----------------------------------------TS--SSBSSHHHHHHHHH---TTS--S-TS---------
T ss_pred Ccccccccccccccccccccccc-ccccccccccccccccCCC-CcHHHHHHHHHHHHHhcCCCCCCCCcC---------
Confidence 57899999999999999976665 3466788888999888765 367889999999999999999998641
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcccC
Q 026485 148 PLDGNRSNLVQTAWAMMSLIHAGQMERDPTPLHRAAKLLINSQLE 192 (238)
Q Consensus 148 ~~~~~~~~~~~Ta~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~~ 192 (238)
....+.|+.++.+|...+..+ +.+.++|+++||+++|..
T Consensus 70 -----~~~~~~t~~~~~~l~~~~~~~-~~~~~~r~~~wi~~~~~~ 108 (109)
T PF13243_consen 70 -----GEYVSMTAAAIAALALAGVYP-DDEAVERGLEWILSHQLD 108 (109)
T ss_dssp -------HHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHH---
T ss_pred -----CCCHHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHccCC
Confidence 223556666666666555544 345899999999998753
No 32
>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). FTases are a subgroup of PTase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. These proteins are heterodimers of alpha and beta subunits. Both subunits are required for catalytic activity. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids. Ftase attaches a 15-carbon farnesyl group to the cysteine within the C-terminal CaaX motif of substrate proteins when X is Ala, Met, Ser, Cys or Gln. Protein farnesylation has been shown to play critical roles in a variety of cellular pro
Probab=99.71 E-value=9.1e-16 Score=132.47 Aligned_cols=166 Identities=19% Similarity=0.256 Sum_probs=117.1
Q ss_pred CCCCCCCcccccCCCCchhhhccCcccccccccccCCCcchHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHhcc
Q 026485 1 MQSETGGVPAWEPTGAPSWLELLNPIEFLDEVIIEYDKVECTASALKAMTLFKKLYPKHRTKEVKNFIAKATKFIEDIQK 80 (238)
Q Consensus 1 ~qn~dGg~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~ 80 (238)
.|++||||...+. ..++.-.|..++.+|..++.. +.. + ....++.++||.++|+
T Consensus 59 ~q~~~GgF~~~~~---------------------~~~h~~~Ty~A~~~L~ll~~~-~~~--~--~id~~~~~~~l~~~q~ 112 (299)
T cd02893 59 CQNPSGGFGGGPG---------------------QLPHLATTYAAVNALAIIGTE-EAY--D--VIDREALYKFLLSLKQ 112 (299)
T ss_pred hcCCCCCCCCCCC---------------------CCccHHHHHHHHHHHHHhCCc-hhh--h--HhhHHHHHHHHHHhcC
Confidence 4889999985221 123344588888888887642 101 0 1234569999999999
Q ss_pred cCCCCcc-cccccchhhhHHHHHHHHHccccCccHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcccCCCCCCCCHHHH
Q 026485 81 SDGSWYG-SWGICFTYAAWFAISGLVAAKKTYSNCLAIRKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQT 159 (238)
Q Consensus 81 ~dG~w~~-~~~~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~dGgw~~~~~~~~~~~y~~~~~~~~~~~~T 159 (238)
+||+|.. ..++.++..|..++..+..++.. .+..++++++||+++|+.||||+..+ +.+++.-.|
T Consensus 113 ~dGgf~~~~~~e~D~r~tycava~~~lL~~~--~~~~~~~~~~~l~~cQ~~dGGF~~~p------------~~e~h~~yT 178 (299)
T cd02893 113 PDGSFRMHVGGEVDVRGTYCAISVASLLNIL--TDELFEGVAEYILSCQTYEGGFGGVP------------GNEAHGGYT 178 (299)
T ss_pred CCCCeeCCCCCCchHhHHHHHHHHHHHhCCC--chhhHHHHHHHHHHcCCCCCCcCCCC------------CCCCCccHH
Confidence 9999964 33444555555555555555554 24568999999999999999998642 446777789
Q ss_pred HHHHHHHHHhCCCCCChHHHHHHHHHHHhcccC-CCCCCCCccccccCCccc
Q 026485 160 AWAMMSLIHAGQMERDPTPLHRAAKLLINSQLE-DGDFPQQELTGVFMENCM 210 (238)
Q Consensus 160 a~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~~-dGgw~~~~~~~~~~~~~~ 210 (238)
.+++.+|...+.... ..+++.++||+++|.+ +|||.... +..+++||
T Consensus 179 fcavasL~llg~~~~--~d~~~l~~wl~~~q~~~~GGf~grp--~k~~D~cy 226 (299)
T cd02893 179 FCALAALAILGKPDK--LDLESLLRWLVARQMRFEGGFQGRT--NKLVDGCY 226 (299)
T ss_pred HHHHHHHHHcCCccc--cCHHHHHHHHHhhcCCCCCCcCCCC--CCCCccHH
Confidence 999999998886542 2688999999999988 89997442 33455554
No 33
>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=5.5e-16 Score=127.03 Aligned_cols=173 Identities=25% Similarity=0.341 Sum_probs=132.2
Q ss_pred CCCCCCcccccCCCCchhhhccCcccccccccccCCCcchHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHhccc
Q 026485 2 QSETGGVPAWEPTGAPSWLELLNPIEFLDEVIIEYDKVECTASALKAMTLFKKLYPKHRTKEVKNFIAKATKFIEDIQKS 81 (238)
Q Consensus 2 qn~dGg~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~~ 81 (238)
||+||||+.++.. .++.| .|-.+++.|+.+... +. -.+++-+.|+...|++
T Consensus 79 ~~~~GGfa~~~Gh-d~hll--------------------~TlsAvQiL~~ydsi-~~-------~d~d~v~~yi~gLq~e 129 (329)
T KOG0366|consen 79 QHEDGGFAGCPGH-DPHLL--------------------YTLSAVQILALYDSI-NV-------LDRDKVASYIKGLQQE 129 (329)
T ss_pred ecCCCCcCCCCCC-ChHHH--------------------HHHHHHHHHHHHccc-cc-------ccHHHHHHHHHhhcCc
Confidence 7899999988875 44444 388888888887654 21 2356678999999999
Q ss_pred CCCCcc-cccccchhhhHHHHHHHHHccccCccHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcccCCCCCCCCHHHHH
Q 026485 82 DGSWYG-SWGICFTYAAWFAISGLVAAKKTYSNCLAIRKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTA 160 (238)
Q Consensus 82 dG~w~~-~~~~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~dGgw~~~~~~~~~~~y~~~~~~~~~~~~Ta 160 (238)
||+|.+ .|++-.+.-+..++.+|..+|... ...+++|++|+++|-|-||||+..+ |.+|..-+..
T Consensus 130 dGsF~gD~wGEvDTRfs~~av~~L~lLg~ld--~~nve~aVd~~~~CyN~DGGFG~~p------------GaESHagqif 195 (329)
T KOG0366|consen 130 DGSFSGDIWGEVDTRFSYCAVACLALLGKLD--TINVEKAVDFVLSCYNFDGGFGCRP------------GAESHAGQIF 195 (329)
T ss_pred CCcccCCcccccchhhhHHHHHHHHHHhhHH--HhhHHHHHHHHHhhcccCCCcCCCC------------Ccccccceeh
Confidence 999975 788877777778888898888773 5668999999999999999999764 4455566677
Q ss_pred HHHHHHHHhCCCCCChHHHHHHHHHHHhcccCCCCCCCCccccccCCccccccCCchhhHHHHHHHHH
Q 026485 161 WAMMSLIHAGQMERDPTPLHRAAKLLINSQLEDGDFPQQELTGVFMENCMLHYPIYRNIFPMWALAEY 228 (238)
Q Consensus 161 ~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~~dGgw~~~~~~~~~~~~~~~~~~~~~~~~~l~aL~~~ 228 (238)
+++-+|..++..... ..++.-.||.++|.+.||-+-.. --.|++|| .-|+|..|.-.
T Consensus 196 cCvgaLai~~~L~~v--d~d~lgwwlceRQ~~sGGLNGRp--eKlpDVCY-------SwWvlsSL~ii 252 (329)
T KOG0366|consen 196 CCVGALAITGKLHLV--DRDLLGWWLCERQLPSGGLNGRP--EKLPDVCY-------SWWVLSSLAII 252 (329)
T ss_pred hhHHHHHHccchhhc--CHHHHHHHHHhccCCCCCCCCCc--ccCcchhh-------HHHHHhHHHHh
Confidence 788888888876532 35667889999999999986431 23677887 55777766544
No 34
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits re
Probab=99.68 E-value=1.3e-15 Score=130.87 Aligned_cols=145 Identities=16% Similarity=0.144 Sum_probs=115.5
Q ss_pred ccCCCcchHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHhc-ccCCCCcccc-cccchhhhHHHHHHHHHccccC
Q 026485 34 IEYDKVECTASALKAMTLFKKLYPKHRTKEVKNFIAKATKFIEDIQ-KSDGSWYGSW-GICFTYAAWFAISGLVAAKKTY 111 (238)
Q Consensus 34 ~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q-~~dG~w~~~~-~~~~~~~T~~al~aL~~~g~~~ 111 (238)
.+.+.+-.|.++|.+|..++...+ ...++++++||.++| ++||+|.... +..++..|..++.+|..++...
T Consensus 22 ~~~~~~~~~y~~l~~l~ll~~~~~-------~~~~~~~i~~l~~~q~~~~Ggf~~~~~~~~~~~~T~~al~~l~llg~~~ 94 (286)
T cd02890 22 LDASRLWLLYWILSSLDLLGEDLD-------DENKDEIIDFIYSCQVNEDGGFGGGPGQDPHLASTYAAVLSLAILGDDA 94 (286)
T ss_pred HHhhHHHHHHHHHHHHHHhCCCcc-------hHHHHHHHHHHHHhhcCCCCCCCCCCCCCccHHHHHHHHHHHHHcCccc
Confidence 355556679999999999885211 367999999999999 9999996532 3456778999999999998731
Q ss_pred ccHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcccCCCCCCCCHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhccc
Q 026485 112 SNCLAIRKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMERDPTPLHRAAKLLINSQL 191 (238)
Q Consensus 112 ~~~~~i~~a~~~L~~~Q~~dGgw~~~~~~~~~~~y~~~~~~~~~~~~Ta~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~ 191 (238)
.....++++++||.++|++||||...+ .+.+++..|.+|+.+|...+... .+.+++.++||+++|+
T Consensus 95 ~~~~~~~~~~~~l~~~q~~dGgf~~~~------------~~~~d~~~ty~al~~l~ll~~~~--~~~~~~~~~~l~~~Q~ 160 (286)
T cd02890 95 LSRIDREKIYKFLSSLQNPDGSFRGDL------------GGEVDTRFVYCALSILSLLNILT--DIDKEKLIDYILSCQN 160 (286)
T ss_pred cchhhHHHHHHHHHHhcCCCCCcccCC------------CCCchHHHHHHHHHHHHHhCCch--hhhHHHHHHHHHHhCC
Confidence 023456889999999999999997642 34578889999999999887654 2379999999999999
Q ss_pred CCCCCCCC
Q 026485 192 EDGDFPQQ 199 (238)
Q Consensus 192 ~dGgw~~~ 199 (238)
+||||+..
T Consensus 161 ~dGGf~~~ 168 (286)
T cd02890 161 YDGGFGGV 168 (286)
T ss_pred CCCCcCCC
Confidence 99999864
No 35
>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits r
Probab=99.67 E-value=1.8e-15 Score=130.99 Aligned_cols=179 Identities=13% Similarity=0.116 Sum_probs=126.5
Q ss_pred CCCCCCCcccccCCCCchhhhccCcccccccccccCCCcchHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHhcc
Q 026485 1 MQSETGGVPAWEPTGAPSWLELLNPIEFLDEVIIEYDKVECTASALKAMTLFKKLYPKHRTKEVKNFIAKATKFIEDIQK 80 (238)
Q Consensus 1 ~qn~dGg~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~ 80 (238)
+|++||||+..+.. ....++.-.|..+|.++..++...+ + ...+++.++||.++|+
T Consensus 124 ~q~~dGgF~~~~~~------------------~~~e~d~r~ty~Av~~l~lL~~~~~----~--~~d~~~li~~l~s~Q~ 179 (307)
T cd02895 124 LQLPDGSFGSVLDS------------------EGGENDMRFCYCAVAICYMLDDWSE----E--DIDKEKLIDYIKSSQS 179 (307)
T ss_pred hCCCCCCccCCcCC------------------cCCCccHHHHHHHHHHHHHhCCCcc----c--cccHHHHHHHHHHccC
Confidence 58999999954310 0011223457778888888764311 0 1247889999999999
Q ss_pred cCCCCccc-ccccchhhhHHHHHHHHHccccCc-cHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcccCCCCCCCCHHH
Q 026485 81 SDGSWYGS-WGICFTYAAWFAISGLVAAKKTYS-NCLAIRKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQ 158 (238)
Q Consensus 81 ~dG~w~~~-~~~~~~~~T~~al~aL~~~g~~~~-~~~~i~~a~~~L~~~Q~~dGgw~~~~~~~~~~~y~~~~~~~~~~~~ 158 (238)
+||+|... +.+.+.-.|..++.+|..++.... ....+++.++||+++|+.+|||.+.+ +..+++..
T Consensus 180 ~dGGF~~~~~~Esh~g~Tyca~asL~lL~~~~~~~~~~~~~l~~wL~~rQ~~~GGF~gr~------------~k~~D~cy 247 (307)
T cd02895 180 YDGGFGQGPGLESHGGSTFCAIASLSLLGKLEELSEKFLERLKRWLVHRQVSGTGFNGRP------------NKPADTCY 247 (307)
T ss_pred CCCCccCCCCCCccccHHHHHHHHHHHcCCccccccccHHHHHHHHHHhcCCCCCcCCCC------------CCCCccch
Confidence 99999643 334555567888888888876520 13457899999999999999998653 44678889
Q ss_pred HHHHHHHHHHhCCCCCChHHHHHHHHHHHhccc-CCCCCCCCccccccCCccccccCCchhhHHHHHHH
Q 026485 159 TAWAMMSLIHAGQMERDPTPLHRAAKLLINSQL-EDGDFPQQELTGVFMENCMLHYPIYRNIFPMWALA 226 (238)
Q Consensus 159 Ta~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~-~dGgw~~~~~~~~~~~~~~~~~~~~~~~~~l~aL~ 226 (238)
|.|++.+|...+.... ..+++..+||+++|+ .+|||.... +..++.++ ++++|.||.
T Consensus 248 sfw~~a~L~iL~~~~~--id~~~l~~~l~~~q~~~~GGf~~~p--~~~~D~~h-------t~~~la~Ls 305 (307)
T cd02895 248 SFWVGASLKLLDAFQL--IDFEKNRNYLLSTQQSLVGGFAKNP--DSHPDPLH-------SYLGLAALS 305 (307)
T ss_pred hhHHHHHHHHcCcccc--cCHHHHHHHHHHHcCCCCCCcCCCC--CCCCChhH-------HHHHHHHHH
Confidence 9999999988876532 258889999998875 589998653 33344332 677887775
No 36
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M). Alpha (2)-M is a major carrier protein in serum. It is a broadly specific proteinase inhibitor. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. This group contains another broadly specific proteinase inhibitor: pregnancy zone protein (PZP). PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. This group also contains C3, C4 and C5 of vertebrate complement. The vertebrate complement is an effector of both the acquired and innate immune systems The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propaga
Probab=99.66 E-value=4.7e-15 Score=126.70 Aligned_cols=180 Identities=23% Similarity=0.284 Sum_probs=122.7
Q ss_pred CCCCCCCcccccCC-CCchhhhccCcccccccccccCCCcchHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHhc
Q 026485 1 MQSETGGVPAWEPT-GAPSWLELLNPIEFLDEVIIEYDKVECTASALKAMTLFKKLYPKHRTKEVKNFIAKATKFIEDIQ 79 (238)
Q Consensus 1 ~qn~dGg~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q 79 (238)
+||+||||+.|+.. .+..| +|++++.+|..+++..+ . .++.|+++++||.+.|
T Consensus 61 ~Q~~dGgf~~w~~~~~~~~~---------------------~Ta~~~~~L~~a~~~~~--v---~~~~i~ra~~~L~~~q 114 (282)
T cd02891 61 YQRSDGSFSAWGNSDSGSTW---------------------LTAYVVKFLSQARKYID--V---DENVLARALGWLVPQQ 114 (282)
T ss_pred hcCCCCCccccCCCCCCchH---------------------HHHHHHHHHHHHHHcCC--C---CHHHHHHHHHHHHhcc
Confidence 69999999999765 44444 49999999998875321 1 1478999999999999
Q ss_pred ccCCCCcccccc----------cchhhhHHHHHHHHHccccCccHHHHHHHHHHHHhccccCCC-CC------------C
Q 026485 80 KSDGSWYGSWGI----------CFTYAAWFAISGLVAAKKTYSNCLAIRKATDFLLKIQCEDGG-WG------------E 136 (238)
Q Consensus 80 ~~dG~w~~~~~~----------~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~dGg-w~------------~ 136 (238)
++||+|...+.. .....|++++.+|...|... ...+.++++||.++....-. +. .
T Consensus 115 ~~~g~~~~~~~~~~~~~~~~~~~~~~~tA~al~~L~~~g~~~--~~~~~~a~~~L~~~~~~~~~~~~~a~la~al~~~g~ 192 (282)
T cd02891 115 KEDGSFRELGPVIHREMKGGVDDSVSLTAYVLIALAEAGKAC--DASIEKALAYLETQLDGLLDPYALAILAYALALAGD 192 (282)
T ss_pred CCCCCcCCCCCccCHhhcCCcCCCcchHHHHHHHHHHhcccc--hHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHcCc
Confidence 999999653321 22347899999999988752 56788888988876542100 00 0
Q ss_pred CCC-------------CCCC-----CcccCCCCCCCCHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcccCCCCCCC
Q 026485 137 SYR-------------SCPN-----KKYIPLDGNRSNLVQTAWAMMSLIHAGQMERDPTPLHRAAKLLINSQLEDGDFPQ 198 (238)
Q Consensus 137 ~~~-------------~~~~-----~~y~~~~~~~~~~~~Ta~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~~dGgw~~ 198 (238)
... .... ..+....+....+..|+++|++....+ +.+...+.+.||.++++..|+|..
T Consensus 193 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~a~all~~~~~~----~~~~~~~~~~~L~~~~~~~~~~~s 268 (282)
T cd02891 193 STRADEALKKLLEAAREKGGTAHWSLSWPGDYGSSLRVEATAYALLALLKLG----DLEEAGPIAKWLAQQRNSGGGFLS 268 (282)
T ss_pred cHHHHHHHHHHHHHhhhcCCcccccCCCCCCCCchhhHHHHHHHHHHHHhcC----ChhhHHHHHHHHHHcCCCCCCccc
Confidence 000 0000 000000122345678888888876544 223678899999998888999997
Q ss_pred CccccccCCccccccCCchhhHHHHHHHHH
Q 026485 199 QELTGVFMENCMLHYPIYRNIFPMWALAEY 228 (238)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~l~aL~~~ 228 (238)
++ .++++|.||..|
T Consensus 269 Tq----------------~t~~al~AL~~y 282 (282)
T cd02891 269 TQ----------------DTVVALQALAAY 282 (282)
T ss_pred HH----------------HHHHHHHHHHhC
Confidence 76 388999999875
No 37
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional
Probab=99.64 E-value=7.1e-15 Score=127.77 Aligned_cols=154 Identities=18% Similarity=0.217 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHhcccCCCCccc-ccccchhhhHHHHHHHHHccccCccHHHHHHH
Q 026485 42 TASALKAMTLFKKLYPKHRTKEVKNFIAKATKFIEDIQKSDGSWYGS-WGICFTYAAWFAISGLVAAKKTYSNCLAIRKA 120 (238)
Q Consensus 42 Ta~~l~aL~~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~~dG~w~~~-~~~~~~~~T~~al~aL~~~g~~~~~~~~i~~a 120 (238)
|..++.++..++.. . ...++++++||.++|++||+|... ..+.+...|+.++.+|..++.....+ .++.
T Consensus 136 ty~a~a~l~LL~~~-~-------~i~~~~~~~~i~scq~~dGGF~~~p~~esh~g~T~caiaaL~llg~~~~~d--~~~l 205 (316)
T PLN03201 136 SYCALCCLSLLKRL-D-------KINVEKAVDYIVSCKNFDGGFGCTPGGESHAGQIFCCVGALAITGSLHHVD--KDLL 205 (316)
T ss_pred HHHHHHHHHHhCcc-c-------hhHHHHHHHHHHHhcCCCCCcCCCCCCCCccceehHHHHHHHHcCccccCC--HHHH
Confidence 66677777776532 1 135789999999999999999754 33455556888999998888653222 4577
Q ss_pred HHHHHhccccCCCCCCCCCCCCCCcccCCCCCCCCHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcccC-CCCCCCC
Q 026485 121 TDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMERDPTPLHRAAKLLINSQLE-DGDFPQQ 199 (238)
Q Consensus 121 ~~~L~~~Q~~dGgw~~~~~~~~~~~y~~~~~~~~~~~~Ta~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~~-dGgw~~~ 199 (238)
+.||+++|.++|||.+.+ +..+|...|.|++.+|...+..... ..++..+||+++|++ .|||...
T Consensus 206 ~~wL~~rQ~~~GGf~grp------------~k~~D~cys~w~~a~L~ll~~~~~~--d~~~l~~~i~~~q~~~~GGf~~~ 271 (316)
T PLN03201 206 GWWLCERQVKSGGLNGRP------------EKLPDVCYSWWVLSSLIIIDRVHWI--DKDKLAKFILDCQDDENGGISDR 271 (316)
T ss_pred HHHHHHhCCCCCCcCCCC------------CCCCchHHHHHHHHHHHHhcccccc--CHHHHHHHHHHHcCCCCCCcCCC
Confidence 899999999999998753 4467899999999999988765322 567889999999986 7999865
Q ss_pred ccccccCCccccccCCchhhHHHHHHHHH
Q 026485 200 ELTGVFMENCMLHYPIYRNIFPMWALAEY 228 (238)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~l~aL~~~ 228 (238)
. +..++.++ +++.|.+|.-.
T Consensus 272 p--~~~~D~~h-------t~~~l~~lsl~ 291 (316)
T PLN03201 272 P--DDAVDVFH-------TFFGVAGLSLL 291 (316)
T ss_pred c--CCCCChhH-------HHHHHHHHHhc
Confidence 3 22333322 45566665544
No 38
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement. The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.
Probab=99.64 E-value=5e-15 Score=127.92 Aligned_cols=148 Identities=20% Similarity=0.246 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHhhCCCc--chHHHHHHHHHHHHHHHHhcccCCCCccccc--ccchhhhHHHHHHHHHccccC-ccHHH
Q 026485 42 TASALKAMTLFKKLYPKH--RTKEVKNFIAKATKFIEDIQKSDGSWYGSWG--ICFTYAAWFAISGLVAAKKTY-SNCLA 116 (238)
Q Consensus 42 Ta~~l~aL~~~~~~~~~~--~~~~~~~~i~~a~~~L~~~Q~~dG~w~~~~~--~~~~~~T~~al~aL~~~g~~~-~~~~~ 116 (238)
+.+++..|...+...+.. ..++..+.|++++..++++|++||+| +.|+ ...++.|++|+.+|..+.+.. .++..
T Consensus 26 ~~~~~~yl~~~~~~~~~~~~~~~~~~~~i~~g~~r~l~~q~~dGsf-~~w~~~~~s~wlTA~v~~~l~~a~~~~~v~~~~ 104 (297)
T cd02896 26 TVYALRYLDTTNQWEKLGPERRDEALKYIRQGYQRQLSYRKPDGSY-AAWKNRPSSTWLTAFVVKVFSLARKYIPVDQNV 104 (297)
T ss_pred HHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHhccCCCCCc-cCCCCCCcchhhHHHHHHHHHHHHHcCCCCHHH
Confidence 445555555543321111 12346688999999999999999999 5664 346788999999998876532 25688
Q ss_pred HHHHHHHHHhccccCCCCCCCCCCCCCCcccCCCCCCCCHHHHHHHHHHHHHhCCCCC-----ChHHHHHHHHHHHhcc
Q 026485 117 IRKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMER-----DPTPLHRAAKLLINSQ 190 (238)
Q Consensus 117 i~~a~~~L~~~Q~~dGgw~~~~~~~~~~~y~~~~~~~~~~~~Ta~al~aL~~~g~~~~-----~~~~v~~a~~~L~~~Q 190 (238)
++|+++||++.|++||+|.+....++..++.+..+..+++..|||++.+|...+.... ...+|+||++||.++|
T Consensus 105 l~~a~~wL~~~Q~~dG~f~e~~~~~~~~m~gg~~~~~~~~~lTA~vl~aL~~~~~~~~~~~~~~~~~i~rA~~yL~~~~ 183 (297)
T cd02896 105 ICGSVNWLISNQKPDGSFQEPSPVIHREMTGGVEGSEGDVSLTAFVLIALQEARSICPPEVQNLDQSIRKAISYLENQL 183 (297)
T ss_pred HHHHHHHHHhcCCCCCeeCCCCCccChhccCCccccCCCccchHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHhc
Confidence 9999999999999999999875544432222111123678899999999998865311 1124555555555543
No 39
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation.
Probab=99.62 E-value=1.6e-14 Score=124.46 Aligned_cols=123 Identities=20% Similarity=0.272 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHhcccCCCCccccc----ccchhhhHHHHHHHHHcccc-CccHHHHHHHHHHHHhccccCCCCCCCCC
Q 026485 65 KNFIAKATKFIEDIQKSDGSWYGSWG----ICFTYAAWFAISGLVAAKKT-YSNCLAIRKATDFLLKIQCEDGGWGESYR 139 (238)
Q Consensus 65 ~~~i~~a~~~L~~~Q~~dG~w~~~~~----~~~~~~T~~al~aL~~~g~~-~~~~~~i~~a~~~L~~~Q~~dGgw~~~~~ 139 (238)
.+.|++++..|.++|++||+| +.|+ ...++.|++|+.+|..++.. ...+..++|+++||++.|++||+|.+...
T Consensus 48 ~~~l~~g~~~~~~~q~~dGsf-~~w~~~~~~~~~wlTa~v~~~L~~a~~~~~v~~~~i~ra~~wL~~~Q~~dG~f~~~~~ 126 (292)
T cd02897 48 LGFLRTGYQRQLTYKHSDGSY-SAFGESDKSGSTWLTAFVLKSFAQARPFIYIDENVLQQALTWLSSHQKSNGCFREVGR 126 (292)
T ss_pred HHHHHHHHHHHHhccCCCCCe-ecccCCCCCcchhhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCCCCCCCCCc
Confidence 356888888888999999999 5664 34678999999999988742 22568999999999999999999986422
Q ss_pred CCCCCcccCCCCCCCCHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcccC
Q 026485 140 SCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMERDPTPLHRAAKLLINSQLE 192 (238)
Q Consensus 140 ~~~~~~y~~~~~~~~~~~~Ta~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~~ 192 (238)
.. +..+.+ +..+++..|+|++++|...+.... .+.++|+++||.+.+.+
T Consensus 127 ~~-~~~~~~--~~~~~~~~TA~vl~aL~~~g~~~~-~~~i~~a~~yL~~~~~~ 175 (292)
T cd02897 127 VF-HKAMQG--GVDDEVALTAYVLIALLEAGLPSE-RPVVEKALSCLEAALDS 175 (292)
T ss_pred cc-ChhhcC--CCCCCcchHHHHHHHHHhcCCccc-cHHHHHHHHHHHHhccc
Confidence 11 110100 123557789999999999987542 34899999999997764
No 40
>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). FTases are a subgroup of PTase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. These proteins are heterodimers of alpha and beta subunits. Both subunits are required for catalytic activity. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids. Ftase attaches a 15-carbon farnesyl group to the cysteine within the C-terminal CaaX motif of substrate proteins when X is Ala, Met, Ser, Cys or Gln. Protein farnesylation has been shown to play critical roles in a variety of cellular pro
Probab=99.59 E-value=6.2e-14 Score=121.10 Aligned_cols=144 Identities=14% Similarity=0.186 Sum_probs=107.0
Q ss_pred cCCCcchHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHhcccCCCCccc-ccccchhhhHHHHHHHHHccccC-c
Q 026485 35 EYDKVECTASALKAMTLFKKLYPKHRTKEVKNFIAKATKFIEDIQKSDGSWYGS-WGICFTYAAWFAISGLVAAKKTY-S 112 (238)
Q Consensus 35 ~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~~dG~w~~~-~~~~~~~~T~~al~aL~~~g~~~-~ 112 (238)
|.+.+-.+.++|.+|..++... .+..+++.++||.++|++||+|.+. ....++..|..++..|..++... .
T Consensus 23 d~~~~~~~y~~l~~l~lL~~~~-------~~~~~~~~i~~i~~~q~~~GgF~~~~~~~~h~~~Ty~A~~~L~ll~~~~~~ 95 (299)
T cd02893 23 DASRPWLLYWILHSLELLGEEL-------DQSYADDVISFLRRCQNPSGGFGGGPGQLPHLATTYAAVNALAIIGTEEAY 95 (299)
T ss_pred ccccHHHHHHHHHHHHHhCCcc-------cHHHHHHHHHHHHHhcCCCCCCCCCCCCCccHHHHHHHHHHHHHhCCchhh
Confidence 3445567889999999987521 1245789999999999999999753 23556778888999998888631 0
Q ss_pred cHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcccCCCCCCCCHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcccC
Q 026485 113 NCLAIRKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMERDPTPLHRAAKLLINSQLE 192 (238)
Q Consensus 113 ~~~~i~~a~~~L~~~Q~~dGgw~~~~~~~~~~~y~~~~~~~~~~~~Ta~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~~ 192 (238)
.....+++++||.++|++||||.... ++++++-.|-+|+..+...+... ++.++++++||+++|++
T Consensus 96 ~~id~~~~~~~l~~~q~~dGgf~~~~------------~~e~D~r~tycava~~~lL~~~~--~~~~~~~~~~l~~cQ~~ 161 (299)
T cd02893 96 DVIDREALYKFLLSLKQPDGSFRMHV------------GGEVDVRGTYCAISVASLLNILT--DELFEGVAEYILSCQTY 161 (299)
T ss_pred hHhhHHHHHHHHHHhcCCCCCeeCCC------------CCCchHhHHHHHHHHHHHhCCCc--hhhHHHHHHHHHHcCCC
Confidence 12334679999999999999998752 34566666666666665555432 34789999999999999
Q ss_pred CCCCCCC
Q 026485 193 DGDFPQQ 199 (238)
Q Consensus 193 dGgw~~~ 199 (238)
||||+..
T Consensus 162 dGGF~~~ 168 (299)
T cd02893 162 EGGFGGV 168 (299)
T ss_pred CCCcCCC
Confidence 9999853
No 41
>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=6.1e-14 Score=117.94 Aligned_cols=166 Identities=20% Similarity=0.253 Sum_probs=115.3
Q ss_pred CCCCCCcccccCCCCchhhhccCcccccccccccCCCcchHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHhccc
Q 026485 2 QSETGGVPAWEPTGAPSWLELLNPIEFLDEVIIEYDKVECTASALKAMTLFKKLYPKHRTKEVKNFIAKATKFIEDIQKS 81 (238)
Q Consensus 2 qn~dGg~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~~ 81 (238)
++++|||+.++.. ..+| ..|-.+|.+|+.+... .... ....++..+||.+.|+|
T Consensus 88 ~~~~G~f~~~~g~-----~~hL----------------~sT~~Ai~~L~~~d~~-~~~~----~idr~~l~~fi~~lk~p 141 (342)
T COG5029 88 VGPSGGFGGGPGQ-----DSHL----------------ASTVFAIQSLAMLDSL-DVLS----RIDRDSLASFISGLKNP 141 (342)
T ss_pred ecCCCCcCCCCcc-----chhH----------------HHHHHHHHHHHHhccc-cccc----hhhHHHHHHHHHhccCC
Confidence 5778888855442 2233 2389999999998643 1110 12334679999999999
Q ss_pred CCCCcc-cccccchhhhHHHHHHHHHccccCccHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcccCCCCCCCCHHHHH
Q 026485 82 DGSWYG-SWGICFTYAAWFAISGLVAAKKTYSNCLAIRKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTA 160 (238)
Q Consensus 82 dG~w~~-~~~~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~dGgw~~~~~~~~~~~y~~~~~~~~~~~~Ta 160 (238)
||+|.+ .+++.++.....++..|..+|.. ..+..+-+++||.+||+=||||+..+. .++..-.|.
T Consensus 142 dGsF~~~~~gevDtr~~Y~al~ilsllg~~--~~~~~e~~vdyl~kCqnyeGGFg~~p~------------aEaHag~tF 207 (342)
T COG5029 142 DGSFRSDLEGEVDTRFLYIALSILSLLGDL--DKELFEGAVDYLKKCQNYEGGFGLCPY------------AEAHAGYTF 207 (342)
T ss_pred CCceecccCCcchHHHHHHHHHHHHHHhhc--chhhhHHHHHHHHHhhccCCcccCCCc------------hhhccchHH
Confidence 999964 44544444333344445555544 356678999999999999999997642 345556788
Q ss_pred HHHHHHHHhCCCCCChHHHHHHHHHHHhcccCCCCCCCCccccccCCccc
Q 026485 161 WAMMSLIHAGQMERDPTPLHRAAKLLINSQLEDGDFPQQELTGVFMENCM 210 (238)
Q Consensus 161 ~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~~dGgw~~~~~~~~~~~~~~ 210 (238)
+||.+|...+..+... .+++.+.||.++|.+.||+.-.. --+++.||
T Consensus 208 calaalalL~~Ld~ls-~~E~l~~Wl~~RQ~ssgGl~GR~--nKl~D~CY 254 (342)
T COG5029 208 CALAALALLGKLDKLS-DVEKLIRWLAERQLSSGGLNGRS--NKLVDTCY 254 (342)
T ss_pred HHHHHHHHHhcccccc-hHHHHHHHHHHcccccCCcCCCc--ccCccchh
Confidence 8999888887765432 48999999999999999987432 23666675
No 42
>PLN02710 farnesyltranstransferase subunit beta
Probab=99.51 E-value=3.2e-13 Score=120.86 Aligned_cols=145 Identities=14% Similarity=0.220 Sum_probs=104.3
Q ss_pred ccCCCcchHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHhcccCCCCccccc-ccchhhhHHHHHHHHHccccCc
Q 026485 34 IEYDKVECTASALKAMTLFKKLYPKHRTKEVKNFIAKATKFIEDIQKSDGSWYGSWG-ICFTYAAWFAISGLVAAKKTYS 112 (238)
Q Consensus 34 ~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~~dG~w~~~~~-~~~~~~T~~al~aL~~~g~~~~ 112 (238)
.|.+.+-.+.++|.+|..++.... +...++.++||.++|++||||.+..+ ..+...|..++.+|..++....
T Consensus 67 lDa~r~~~~Yw~L~sL~lLg~~l~-------~~~~~~ii~~l~~cQ~~dGGFgg~pg~~~hl~~TY~Av~~L~iLg~~~~ 139 (439)
T PLN02710 67 LDANRPWLCYWILHSIALLGESLD-------DELENDTIDFLSRCQDPNGGYGGGPGQLPHLATTYAAVNTLVTIGGERA 139 (439)
T ss_pred hhhhhHHHHHHHHHHHHHhCCccc-------HHHHHHHHHHHHHhcCCCcCCCCCCCCCccHHHHHHHHHHHHHcCCchh
Confidence 355666789999999999875211 23567899999999999999976433 3466678889999988885311
Q ss_pred -cHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcccCCCCCCCCHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhccc
Q 026485 113 -NCLAIRKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMERDPTPLHRAAKLLINSQL 191 (238)
Q Consensus 113 -~~~~i~~a~~~L~~~Q~~dGgw~~~~~~~~~~~y~~~~~~~~~~~~Ta~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~ 191 (238)
.....++.++||.++|++||||.... ++++++-.|-+|+..+...+.. +++.+++.++||++||+
T Consensus 140 l~~Idr~~l~~fl~s~q~~dGgF~~~~------------~gE~D~R~tYcAlail~LL~~l--~~~~~e~~~~~I~scQ~ 205 (439)
T PLN02710 140 LSSINREKLYTFLLRMKDPSGGFRMHD------------GGEMDVRACYTAISVASLLNIL--DDELVKGVGDYILSCQT 205 (439)
T ss_pred hcccCHHHHHHHHHHcCCCCCCcccCC------------CCCCCcCCcHHHHHHHHHhCcC--chhhHHHHHHHHHHhCC
Confidence 11235788999999999999998642 3344444455555544444443 23478999999999999
Q ss_pred CCCCCCCC
Q 026485 192 EDGDFPQQ 199 (238)
Q Consensus 192 ~dGgw~~~ 199 (238)
.||||+..
T Consensus 206 ~dGGF~g~ 213 (439)
T PLN02710 206 YEGGIGGE 213 (439)
T ss_pred CCCCCCCC
Confidence 99999854
No 43
>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=6.7e-13 Score=109.05 Aligned_cols=163 Identities=19% Similarity=0.253 Sum_probs=119.7
Q ss_pred HHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHhcccCCCCcccccc-cchhhhHHHHHHHHHccccCccHHHHHHH
Q 026485 42 TASALKAMTLFKKLYPKHRTKEVKNFIAKATKFIEDIQKSDGSWYGSWGI-CFTYAAWFAISGLVAAKKTYSNCLAIRKA 120 (238)
Q Consensus 42 Ta~~l~aL~~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~~dG~w~~~~~~-~~~~~T~~al~aL~~~g~~~~~~~~i~~a 120 (238)
+.-+|.+|+++++.. ...+++|++|+.++-|-||+|+...+. ++.-....++-+|+-.+.....+ .++.
T Consensus 146 s~~av~~L~lLg~ld--------~~nve~aVd~~~~CyN~DGGFG~~pGaESHagqifcCvgaLai~~~L~~vd--~d~l 215 (329)
T KOG0366|consen 146 SYCAVACLALLGKLD--------TINVEKAVDFVLSCYNFDGGFGCRPGAESHAGQIFCCVGALAITGKLHLVD--RDLL 215 (329)
T ss_pred hHHHHHHHHHHhhHH--------HhhHHHHHHHHHhhcccCCCcCCCCCcccccceehhhHHHHHHccchhhcC--HHHH
Confidence 556777788887651 257999999999999999999765553 33323345777888888764322 4778
Q ss_pred HHHHHhccccCCCCCCCCCCCCCCcccCCCCCCCCHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhccc-CCCCCCCC
Q 026485 121 TDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMERDPTPLHRAAKLLINSQL-EDGDFPQQ 199 (238)
Q Consensus 121 ~~~L~~~Q~~dGgw~~~~~~~~~~~y~~~~~~~~~~~~Ta~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~-~dGgw~~~ 199 (238)
-.||..+|.+.||-.+.+ ..-+++....|+|..|...|+..- ..-++.++||+++|. +.|||.+.
T Consensus 216 gwwlceRQ~~sGGLNGRp------------eKlpDVCYSwWvlsSL~iigrl~w--Id~ekL~~FIl~cQd~~~GGfsDR 281 (329)
T KOG0366|consen 216 GWWLCERQLPSGGLNGRP------------EKLPDVCYSWWVLSSLAIIGRLHW--IDREKLTKFILACQDEETGGFSDR 281 (329)
T ss_pred HHHHHhccCCCCCCCCCc------------ccCcchhhHHHHHhHHHHhhhhhh--ccHHHHHHHHHhcCCCCCCCcCCC
Confidence 899999999999987753 235789999999999999887643 246778999999998 67999865
Q ss_pred c--cccccCCcc------ccccCCchhhHHHHHHHHH
Q 026485 200 E--LTGVFMENC------MLHYPIYRNIFPMWALAEY 228 (238)
Q Consensus 200 ~--~~~~~~~~~------~~~~~~~~~~~~l~aL~~~ 228 (238)
. .++.||..+ -+.|+.+..+.|..+|...
T Consensus 282 pgd~~D~fHt~FgiAGLSLlg~~~l~~idP~fcmp~~ 318 (329)
T KOG0366|consen 282 PGDEVDIFHTLFGIAGLSLLGYPGLKPIDPIFCMPKE 318 (329)
T ss_pred CCCcccHHHHHHHHhhHhhhCCCCceecCCcccCcHH
Confidence 3 334466433 3566777777777776654
No 44
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=99.47 E-value=2.6e-12 Score=108.86 Aligned_cols=152 Identities=13% Similarity=0.163 Sum_probs=98.5
Q ss_pred chHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHhcccCCCCcccccc------cchh---hhHHHHHHHHHccc-
Q 026485 40 ECTASALKAMTLFKKLYPKHRTKEVKNFIAKATKFIEDIQKSDGSWYGSWGI------CFTY---AAWFAISGLVAAKK- 109 (238)
Q Consensus 40 d~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~~dG~w~~~~~~------~~~~---~T~~al~aL~~~g~- 109 (238)
+.|...|..|+.+.+. ...+.+.+++.+|++||++.|.+||||+..+.. ..++ .+..+|..|..+..
T Consensus 44 ~aT~~e~~fLa~~y~~---t~d~~y~~A~~rgld~LL~aQypnGGWPQf~p~~~~Y~~~ITfND~am~~vl~lL~~i~~~ 120 (290)
T TIGR02474 44 GATVTEIRYLAQVYQQ---EKNAKYRDAARKGIEYLLKAQYPNGGWPQFYPLKGGYSDAITYNDNAMVNVLTLLDDIANG 120 (290)
T ss_pred ccHHHHHHHHHHHHHh---cCchhHHHHHHHHHHHHHhhhCCCCCcCcccCCcCCcccccccCcHHHHHHHHHHHHHHhc
Confidence 4688888888887654 234557799999999999999999999753321 1122 24567777755421
Q ss_pred -c----------CccHHHHHHHHHHHHhccccCCCCCCCCCCCCCC-cccCCCCC----CC-CHHHHHHHHHHHHHhCCC
Q 026485 110 -T----------YSNCLAIRKATDFLLKIQCEDGGWGESYRSCPNK-KYIPLDGN----RS-NLVQTAWAMMSLIHAGQM 172 (238)
Q Consensus 110 -~----------~~~~~~i~~a~~~L~~~Q~~dGgw~~~~~~~~~~-~y~~~~~~----~~-~~~~Ta~al~aL~~~g~~ 172 (238)
. .....+++||++||++.|.++|||...|...++. -+.|.+.. .| ....|+-+|..|......
T Consensus 121 ~~~~~~~~~~~~~r~~~Ai~Rgid~ILktQ~~~gg~~t~Wg~Qyd~~tl~Pa~AR~yE~pSls~~ES~~iv~~LM~~~~p 200 (290)
T TIGR02474 121 KDPFDVFPDSTRTRAKTAVTKGIECILKTQVVQNGKLTVWCQQHDALTLQPKKARAYELPSLSSSESVGILLFLMTQPNP 200 (290)
T ss_pred cCCcccccHHHHHHHHHHHHHHHHHHHHhhcccCCcCCchhhccCccccccccccccCCcccccccHHHHHHHHhcCCCC
Confidence 1 1246889999999999999999988887765432 12221100 11 122444455555554432
Q ss_pred C-CChHHHHHHHHHHHhcccCCC
Q 026485 173 E-RDPTPLHRAAKLLINSQLEDG 194 (238)
Q Consensus 173 ~-~~~~~v~~a~~~L~~~Q~~dG 194 (238)
. +...+|+.|++||.+...++=
T Consensus 201 s~~i~~ai~~A~~W~~~~~i~g~ 223 (290)
T TIGR02474 201 SAEIKEAIRAGVAWFDTSRIRGY 223 (290)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCc
Confidence 1 122589999999999876653
No 45
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M). Alpha (2)-M is a major carrier protein in serum. It is a broadly specific proteinase inhibitor. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. This group contains another broadly specific proteinase inhibitor: pregnancy zone protein (PZP). PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. This group also contains C3, C4 and C5 of vertebrate complement. The vertebrate complement is an effector of both the acquired and innate immune systems The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propaga
Probab=99.42 E-value=2.5e-12 Score=109.80 Aligned_cols=124 Identities=23% Similarity=0.306 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCccccc---ccchhhhHHHHHHHHHcccc-CccHHHHHHHHHHHHhccccCCCCCCC
Q 026485 62 KEVKNFIAKATKFIEDIQKSDGSWYGSWG---ICFTYAAWFAISGLVAAKKT-YSNCLAIRKATDFLLKIQCEDGGWGES 137 (238)
Q Consensus 62 ~~~~~~i~~a~~~L~~~Q~~dG~w~~~~~---~~~~~~T~~al~aL~~~g~~-~~~~~~i~~a~~~L~~~Q~~dGgw~~~ 137 (238)
.++.+.|++++++|.+.|++|||| +-|. ..+++.|++++.+|..+++. ...++.++|+++||++.|++||+|.+.
T Consensus 45 ~~~~~~i~~~~~~l~~~Q~~dGgf-~~w~~~~~~~~~~Ta~~~~~L~~a~~~~~v~~~~i~ra~~~L~~~q~~~g~~~~~ 123 (282)
T cd02891 45 EKALEYIRKGYQRLLTYQRSDGSF-SAWGNSDSGSTWLTAYVVKFLSQARKYIDVDENVLARALGWLVPQQKEDGSFREL 123 (282)
T ss_pred HHHHHHHHHHHHHHHhhcCCCCCc-cccCCCCCCchHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhccCCCCCcCCC
Confidence 356789999999999999999999 5554 34788999999999876542 125688999999999999999999876
Q ss_pred CCCCCCCcccCCCCCCCCHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhccc
Q 026485 138 YRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMERDPTPLHRAAKLLINSQL 191 (238)
Q Consensus 138 ~~~~~~~~y~~~~~~~~~~~~Ta~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~ 191 (238)
........ . ....+....|+|++.+|...+... ...+.+++.||.++..
T Consensus 124 ~~~~~~~~-~--~~~~~~~~~tA~al~~L~~~g~~~--~~~~~~a~~~L~~~~~ 172 (282)
T cd02891 124 GPVIHREM-K--GGVDDSVSLTAYVLIALAEAGKAC--DASIEKALAYLETQLD 172 (282)
T ss_pred CCccCHhh-c--CCcCCCcchHHHHHHHHHHhcccc--hHHHHHHHHHHHHhcc
Confidence 44321100 0 012455678999999999887753 3478999999998765
No 46
>KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=3.4e-12 Score=108.60 Aligned_cols=151 Identities=20% Similarity=0.237 Sum_probs=108.5
Q ss_pred CCCCCCcccccCCCCchhhhccCcccccccccccCCCcchHHHHHHHHHHHHhhCCCcchHHHH-HHHHHHHHHHHHhcc
Q 026485 2 QSETGGVPAWEPTGAPSWLELLNPIEFLDEVIIEYDKVECTASALKAMTLFKKLYPKHRTKEVK-NFIAKATKFIEDIQK 80 (238)
Q Consensus 2 qn~dGg~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~-~~i~~a~~~L~~~Q~ 80 (238)
|.|.|||+ ++|+++.|+ ..|..+|.+|..++.. .. ++ ....+-..||.+..+
T Consensus 133 ~~PeGGfg-----GGPGQl~HL----------------A~TYAAVnaL~~~~~e-~A-----~~~InR~~l~~fL~slK~ 185 (423)
T KOG0365|consen 133 QGPEGGFG-----GGPGQLPHL----------------APTYAAVNALCLCGSE-DA-----YSSINREKLYQFLFSLKD 185 (423)
T ss_pred CCCCCCCC-----CCCccchhh----------------hHHHHHHHHHHhcCcH-HH-----HHHhhHHHHHHHHHHhcC
Confidence 67999999 788899887 4699999999998764 11 22 345567999999999
Q ss_pred cCCCCcccc-cccchhh--hHHHHHHHHHccccCccHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcccCCCCCCCCHH
Q 026485 81 SDGSWYGSW-GICFTYA--AWFAISGLVAAKKTYSNCLAIRKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLV 157 (238)
Q Consensus 81 ~dG~w~~~~-~~~~~~~--T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~dGgw~~~~~~~~~~~y~~~~~~~~~~~ 157 (238)
+||+|..-. |+.++.+ +|.++..| ++.. .++..+...+||++||+-.||+++.++..-+..
T Consensus 186 ~dGgFrmh~~GE~DvRs~YcA~svasl--lni~--~deL~eG~~~wi~~CQtyEGG~GG~P~~EAHGG------------ 249 (423)
T KOG0365|consen 186 PDGGFRMHVEGEVDVRSAYCALSVASL--LNIP--MDELFEGTLDWIASCQTYEGGFGGEPGVEAHGG------------ 249 (423)
T ss_pred CCCCeEeecCCcchHHHHHHHHHHHHH--HCCC--cHHHHHHHHHHHHhcccccCCcCCCccccccCC------------
Confidence 999996322 3333332 23333333 3333 357778999999999999999999876543322
Q ss_pred HHHHHHHHHHHhCCCCCChHHHHHHHHHHHhccc-CCCCCC
Q 026485 158 QTAWAMMSLIHAGQMERDPTPLHRAAKLLINSQL-EDGDFP 197 (238)
Q Consensus 158 ~Ta~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~-~dGgw~ 197 (238)
.|.++|.+|...+.... -.+++.++|..++|. ..|||.
T Consensus 250 YTFCalAalalLn~~d~--ln~~~Ll~W~~~RQm~~E~GFq 288 (423)
T KOG0365|consen 250 YTFCALAALALLNEMDQ--LNLEKLLEWAVRRQMRFEGGFQ 288 (423)
T ss_pred eeHHHHHHHHHHhhhhh--hCHHHHHHHHHHhhhhhhcccc
Confidence 36677777776665432 368899999999997 688886
No 47
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=99.37 E-value=4.2e-13 Score=98.69 Aligned_cols=97 Identities=24% Similarity=0.227 Sum_probs=41.6
Q ss_pred CCCCCCCcccccCCCCchhhhccCcccccccccccCCCcchHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHhcc
Q 026485 1 MQSETGGVPAWEPTGAPSWLELLNPIEFLDEVIIEYDKVECTASALKAMTLFKKLYPKHRTKEVKNFIAKATKFIEDIQK 80 (238)
Q Consensus 1 ~qn~dGg~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~ 80 (238)
.|++||||+ ++.. ++..+|+.++.+|..++.. . +.+.|+++++||+++|+
T Consensus 11 ~Q~~dG~W~-~~~~----------------------~~~~~t~~~~~al~~~~~~--~-----~~~ai~ka~~~l~~~Q~ 60 (109)
T PF13243_consen 11 QQNPDGSWG-YNWG----------------------SDVFVTAALILALAAAGDA--A-----VDEAIKKAIDWLLSHQN 60 (109)
T ss_dssp -----------------------------------------------------TS--------SSBSSHHHHHHHHH---
T ss_pred ccccccccc-cccc----------------------ccccccccccccccccCCC--C-----cHHHHHHHHHHHHHhcC
Confidence 399999997 3211 1234688889888887642 1 34689999999999999
Q ss_pred cCCCCcccccccchhhhHHHHHHHHHccccCccHHHHHHHHHHHHhccc
Q 026485 81 SDGSWYGSWGICFTYAAWFAISGLVAAKKTYSNCLAIRKATDFLLKIQC 129 (238)
Q Consensus 81 ~dG~w~~~~~~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~ 129 (238)
+||+|... ...+.+.|+.++.+|+..+... .++.++|+++||+++|.
T Consensus 61 ~dG~w~~~-~~~~~~~t~~~~~~l~~~~~~~-~~~~~~r~~~wi~~~~~ 107 (109)
T PF13243_consen 61 PDGGWGYS-GGEYVSMTAAAIAALALAGVYP-DDEAVERGLEWILSHQL 107 (109)
T ss_dssp TTS--S-T-S--HHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHH--
T ss_pred CCCCCCCc-CCCCHHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHccC
Confidence 99999643 3344556666666666555543 67889999999999975
No 48
>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=1.7e-11 Score=103.37 Aligned_cols=136 Identities=18% Similarity=0.234 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHhcccCCCCccccc-ccchhhhHHHHHHHHHccccCccHHHHHHH
Q 026485 42 TASALKAMTLFKKLYPKHRTKEVKNFIAKATKFIEDIQKSDGSWYGSWG-ICFTYAAWFAISGLVAAKKTYSNCLAIRKA 120 (238)
Q Consensus 42 Ta~~l~aL~~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~~dG~w~~~~~-~~~~~~T~~al~aL~~~g~~~~~~~~i~~a 120 (238)
-..++..+++++.. .++..+.+++||.++|+=||+|+.-.+ +.+.-.|..++.+|+.++.....++ +++.
T Consensus 158 ~Y~al~ilsllg~~--------~~~~~e~~vdyl~kCqnyeGGFg~~p~aEaHag~tFcalaalalL~~Ld~ls~-~E~l 228 (342)
T COG5029 158 LYIALSILSLLGDL--------DKELFEGAVDYLKKCQNYEGGFGLCPYAEAHAGYTFCALAALALLGKLDKLSD-VEKL 228 (342)
T ss_pred HHHHHHHHHHHhhc--------chhhhHHHHHHHHHhhccCCcccCCCchhhccchHHHHHHHHHHHhcccccch-HHHH
Confidence 34455555555532 135778889999999999999965332 3454567778888888887643332 8899
Q ss_pred HHHHHhccccCCCCCCCCCCCCCCcccCCCCCCCCHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcccC-CCCCCCC
Q 026485 121 TDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMERDPTPLHRAAKLLINSQLE-DGDFPQQ 199 (238)
Q Consensus 121 ~~~L~~~Q~~dGgw~~~~~~~~~~~y~~~~~~~~~~~~Ta~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~~-dGgw~~~ 199 (238)
+.||.++|.+.||+.+.. ..-.+.....|++..|...+...- ..-++..+||+.+|.+ .|||.+.
T Consensus 229 ~~Wl~~RQ~ssgGl~GR~------------nKl~D~CYs~WvlsSl~il~~~~~--in~e~L~~yiL~c~q~~sGGfsdr 294 (342)
T COG5029 229 IRWLAERQLSSGGLNGRS------------NKLVDTCYSFWVLSSLAILGKLDF--INTEELTDYILDCQQETSGGFSDR 294 (342)
T ss_pred HHHHHHcccccCCcCCCc------------ccCccchhhhhhcchHHhcchhhh--cCHHHHHHHHHhhcccCCCCCCCC
Confidence 999999999999987653 223566677888888877765431 1345678999999988 7999866
Q ss_pred c
Q 026485 200 E 200 (238)
Q Consensus 200 ~ 200 (238)
.
T Consensus 295 p 295 (342)
T COG5029 295 P 295 (342)
T ss_pred C
Confidence 3
No 49
>COG1657 SqhC Squalene cyclase [Lipid metabolism]
Probab=99.28 E-value=1e-11 Score=112.45 Aligned_cols=145 Identities=19% Similarity=0.294 Sum_probs=109.6
Q ss_pred cccCCCcchHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHhcccCCCCcc-------cc-------------ccc
Q 026485 33 IIEYDKVECTASALKAMTLFKKLYPKHRTKEVKNFIAKATKFIEDIQKSDGSWYG-------SW-------------GIC 92 (238)
Q Consensus 33 ~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~~dG~w~~-------~~-------------~~~ 92 (238)
-...+++|.|+.+++++...... +.+.++++|+...|+..|+|.. .| +.+
T Consensus 258 ~~~ypd~d~T~~~~~al~~~~~~----------~~~~~~l~~V~~~q~~~g~~a~~e~~~~~a~~~~L~~~~~~~~~~~s 327 (517)
T COG1657 258 NTGYPDADDTAGVVRALIGVQSL----------PNFELGLDWVLYMQNKLGGLAVYEDRNLHAWLRLLPPAEVKAMVDPS 327 (517)
T ss_pred ccCCCCchhhhHHHHHHHhhcch----------hhHHhhhhHhhhcccccCceeeeccccccHHHhhCCHhhccccccCC
Confidence 34567789999999999986543 3566799999999999999942 00 011
Q ss_pred chhhhHHHHHHHHHccccCc--cHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcccCCCCCCCCHHHHHHHHHHHHHhC
Q 026485 93 FTYAAWFAISGLVAAKKTYS--NCLAIRKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAG 170 (238)
Q Consensus 93 ~~~~T~~al~aL~~~g~~~~--~~~~i~~a~~~L~~~Q~~dGgw~~~~~~~~~~~y~~~~~~~~~~~~Ta~al~aL~~~g 170 (238)
...+|+.++.+|.......+ ....+++|++||++.|.++|.|...|.+| .++.|+.++.+|...+
T Consensus 328 ~adct~~~~~~l~a~~~yl~~~~~~~i~~a~e~LL~~Q~~~GsW~g~w~v~-------------~iY~~s~a~~~l~~~g 394 (517)
T COG1657 328 TADCTHRVVLALAALNAYLEAYDGQPIERALEWLLSDQEPDGSWYGRWGVC-------------YIYGTSGALSALALVG 394 (517)
T ss_pred cccCCCccHHHHhhhhhccccccCCcccHHHhhhhhhccccCceeeEEEEE-------------EEEehhhhhhhhhccC
Confidence 22255666666665543321 13559999999999999999999887665 3578899999999888
Q ss_pred CCCCChHHHHHHHHHHHhcccCCCCCCCCc
Q 026485 171 QMERDPTPLHRAAKLLINSQLEDGDFPQQE 200 (238)
Q Consensus 171 ~~~~~~~~v~~a~~~L~~~Q~~dGgw~~~~ 200 (238)
..+.....+++++.||..+|+++|||....
T Consensus 395 ~~~~~~~~v~~~~~~l~~~~~~~~Gw~e~~ 424 (517)
T COG1657 395 ETDENEVLVRKLISWLVSKQMPDGGWGEAK 424 (517)
T ss_pred ccccchHHHHHHHHHhhhccccCCCccccc
Confidence 876555589999999999999999999664
No 50
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=99.24 E-value=2.3e-11 Score=102.35 Aligned_cols=116 Identities=21% Similarity=0.275 Sum_probs=84.6
Q ss_pred HHHHHHHHhcccCCCCcccc---cccchhhhHHHHHHHHHccccC-ccHHHHHHHHHHHHhccccCCCCCCCCCCCCCCc
Q 026485 70 KATKFIEDIQKSDGSWYGSW---GICFTYAAWFAISGLVAAKKTY-SNCLAIRKATDFLLKIQCEDGGWGESYRSCPNKK 145 (238)
Q Consensus 70 ~a~~~L~~~Q~~dG~w~~~~---~~~~~~~T~~al~aL~~~g~~~-~~~~~i~~a~~~L~~~Q~~dGgw~~~~~~~~~~~ 145 (238)
++..-++++|++||||. .| .++.++.|++++..|..+.+.. .+...+.++++||+++|++||+|.+.....+...
T Consensus 1 ~GYqr~L~y~~~DGsfs-~f~~~~~~s~WLTAfv~k~f~~a~~~i~vd~~~i~~a~~wL~~~Q~~dG~F~e~~~~~~~~~ 79 (246)
T PF07678_consen 1 QGYQRQLSYRRSDGSFS-AFSSDSPSSTWLTAFVVKVFSQAKKYIFVDENVICRAVKWLISQQQPDGSFEEDGPVIHREM 79 (246)
T ss_dssp HHHHHHHTTB-TTSSBB-SSTTTSSBBHHHHHHHHHHHHHHTTTS-CEHHHHHHHHHHHHHHBETTSEB--SSS-SSGGG
T ss_pred CchHHHhcCCCCCCCee-ccccCCcccHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhhcCCCccccCCCcccccc
Confidence 35677889999999994 44 3567899999999999887643 2568899999999999999999987644332211
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhCCCC-----CChHHHHHHHHHHHhc
Q 026485 146 YIPLDGNRSNLVQTAWAMMSLIHAGQME-----RDPTPLHRAAKLLINS 189 (238)
Q Consensus 146 y~~~~~~~~~~~~Ta~al~aL~~~g~~~-----~~~~~v~~a~~~L~~~ 189 (238)
.. +...++..|||++.+|...+... .....++||+.||.+.
T Consensus 80 ~g---~~~~~~~lTA~VliAL~e~~~~~~~~~~~~~~~i~kA~~~L~~~ 125 (246)
T PF07678_consen 80 QG---GVEDDIALTAYVLIALLEAGSLCDSEKPEYENAINKALNYLERH 125 (246)
T ss_dssp SG---GGTHHHHHHHHHHHHHHHCHCCHTTTHHCHHHHHHHHHHHHHHH
T ss_pred CC---CCCCCeeehHHHHHHHHhhhhhccccchhhHHHHHHHHHHHHHh
Confidence 10 12457889999999999987321 1235899999999875
No 51
>KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=1.1e-09 Score=93.45 Aligned_cols=145 Identities=15% Similarity=0.239 Sum_probs=104.0
Q ss_pred ccCCCcchHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHhcccCCCCcccccc-cchhhhHHHHHHHHHccccCc
Q 026485 34 IEYDKVECTASALKAMTLFKKLYPKHRTKEVKNFIAKATKFIEDIQKSDGSWYGSWGI-CFTYAAWFAISGLVAAKKTYS 112 (238)
Q Consensus 34 ~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~~dG~w~~~~~~-~~~~~T~~al~aL~~~g~~~~ 112 (238)
.|.|.+=+-.+++.+|..++...+ +.+.+++++||..+|.|.|||++..|. .+...|..+|.+|+.++....
T Consensus 95 LDASR~Wm~YWil~sl~lL~~~~d-------d~v~~~~i~fL~~c~~PeGGfgGGPGQl~HLA~TYAAVnaL~~~~~e~A 167 (423)
T KOG0365|consen 95 LDASRPWMCYWILNSLALLDEWLD-------DDVKENAIDFLFTCQGPEGGFGGGPGQLPHLAPTYAAVNALCLCGSEDA 167 (423)
T ss_pred cccCcchhHHHHHHHHHHhcCcCC-------HHHHHHHHHHHHhcCCCCCCCCCCCccchhhhHHHHHHHHHHhcCcHHH
Confidence 356667788999999999875322 368899999999999999999876653 345578889999999886532
Q ss_pred cH-HHHHHHHHHHHhccccCCCCCCCCCCCCCCcccCCCCCCCCHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhccc
Q 026485 113 NC-LAIRKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMERDPTPLHRAAKLLINSQL 191 (238)
Q Consensus 113 ~~-~~i~~a~~~L~~~Q~~dGgw~~~~~~~~~~~y~~~~~~~~~~~~Ta~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~ 191 (238)
.+ -...+..+||.+..++||||.-+. +++.|+ ..+|+.++....-....+ +-.+-..+||.+||+
T Consensus 168 ~~~InR~~l~~fL~slK~~dGgFrmh~------------~GE~Dv-Rs~YcA~svasllni~~d-eL~eG~~~wi~~CQt 233 (423)
T KOG0365|consen 168 YSSINREKLYQFLFSLKDPDGGFRMHV------------EGEVDV-RSAYCALSVASLLNIPMD-ELFEGTLDWIASCQT 233 (423)
T ss_pred HHHhhHHHHHHHHHHhcCCCCCeEeec------------CCcchH-HHHHHHHHHHHHHCCCcH-HHHHHHHHHHHhccc
Confidence 11 224678999999999999996431 345554 344444444333222222 466777899999999
Q ss_pred CCCCCCCC
Q 026485 192 EDGDFPQQ 199 (238)
Q Consensus 192 ~dGgw~~~ 199 (238)
.+||++-.
T Consensus 234 yEGG~GG~ 241 (423)
T KOG0365|consen 234 YEGGFGGE 241 (423)
T ss_pred ccCCcCCC
Confidence 99999843
No 52
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=99.08 E-value=7.7e-10 Score=93.88 Aligned_cols=121 Identities=12% Similarity=0.098 Sum_probs=84.6
Q ss_pred CCCCCCCcccccCCCCchhhhccCcccccccccccCCCcchHHHHHHHHHHHHhhCC------CcchHHHHHHHHHHHHH
Q 026485 1 MQSETGGVPAWEPTGAPSWLELLNPIEFLDEVIIEYDKVECTASALKAMTLFKKLYP------KHRTKEVKNFIAKATKF 74 (238)
Q Consensus 1 ~qn~dGg~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~------~~~~~~~~~~i~~a~~~ 74 (238)
+|+++|||+.|.+.++ .++.+|+..+ +.+.++|.+|..+....+ ....+++..+++|+++|
T Consensus 79 aQypnGGWPQf~p~~~-~Y~~~ITfND------------~am~~vl~lL~~i~~~~~~~~~~~~~~~~r~~~Ai~Rgid~ 145 (290)
T TIGR02474 79 AQYPNGGWPQFYPLKG-GYSDAITYND------------NAMVNVLTLLDDIANGKDPFDVFPDSTRTRAKTAVTKGIEC 145 (290)
T ss_pred hhCCCCCcCcccCCcC-CcccccccCc------------HHHHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHHHHHH
Confidence 6999999999998655 7887775433 457789999977643211 11124577999999999
Q ss_pred HHHhcccCCCCcccccccchh-------------------hhHHHHHHHHHcccc-CccHHHHHHHHHHHHhccccCCCC
Q 026485 75 IEDIQKSDGSWYGSWGICFTY-------------------AAWFAISGLVAAKKT-YSNCLAIRKATDFLLKIQCEDGGW 134 (238)
Q Consensus 75 L~~~Q~~dG~w~~~~~~~~~~-------------------~T~~al~aL~~~g~~-~~~~~~i~~a~~~L~~~Q~~dGgw 134 (238)
|++.|.++|+|.+.|+..+.. .|+-+|.-|-.+..+ .+...+|..|++||.+...++=-|
T Consensus 146 ILktQ~~~gg~~t~Wg~Qyd~~tl~Pa~AR~yE~pSls~~ES~~iv~~LM~~~~ps~~i~~ai~~A~~W~~~~~i~g~~~ 225 (290)
T TIGR02474 146 ILKTQVVQNGKLTVWCQQHDALTLQPKKARAYELPSLSSSESVGILLFLMTQPNPSAEIKEAIRAGVAWFDTSRIRGYAY 225 (290)
T ss_pred HHHhhcccCCcCCchhhccCccccccccccccCCcccccccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHCCCCCcee
Confidence 999999999999888754321 133344444433322 235578899999999988765444
No 53
>KOG1366 consensus Alpha-macroglobulin [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=1.5e-09 Score=109.19 Aligned_cols=183 Identities=22% Similarity=0.303 Sum_probs=112.5
Q ss_pred CCCCCCCcccccC--CCCchhhhccCcccccccccccCCCcchHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHh
Q 026485 1 MQSETGGVPAWEP--TGAPSWLELLNPIEFLDEVIIEYDKVECTASALKAMTLFKKLYPKHRTKEVKNFIAKATKFIEDI 78 (238)
Q Consensus 1 ~qn~dGg~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~~a~~~L~~~ 78 (238)
++++||+|++|.. +.+++|| ||++|+.|..... +... .++.+.++++||..+
T Consensus 983 yk~~DgSySaFg~~~~~~stWL---------------------tafvlr~f~~a~~--~i~i---d~~~i~~a~~wl~~~ 1036 (1436)
T KOG1366|consen 983 YKRADGSYSAFGSSDRSGSTWL---------------------TAFVLRVFSQAKE--YIFI---DPNVITQALNWLSQQ 1036 (1436)
T ss_pred hhccCCChhhhcCCCCcccHHH---------------------HHHHHHHhhhccC--ceEe---cHHHHHHHHHHHHHh
Confidence 3689999999988 7788888 9999999999854 2221 137899999999999
Q ss_pred cccCCCCcccc------------cc----------------------------------cchhhhHHHHHHHHHccccCc
Q 026485 79 QKSDGSWYGSW------------GI----------------------------------CFTYAAWFAISGLVAAKKTYS 112 (238)
Q Consensus 79 Q~~dG~w~~~~------------~~----------------------------------~~~~~T~~al~aL~~~g~~~~ 112 (238)
|+++|+|...- .. ..++.-+.+..||..++.+.
T Consensus 1037 Qk~~GsF~e~~~v~~~~~qg~l~~~~~l~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~ayAl~l~~sp~- 1115 (1436)
T KOG1366|consen 1037 QKENGSFKEVGEVLHNEMQGGLQDIVALTAIVLSVILDVDNASIQKAVAYLEESLDSGSMDVYTVAITAYALQLAKSPQ- 1115 (1436)
T ss_pred hccCceEeccccccchhhhcCCCCcceeeeEeeeeeccchhhHHHHHHHHHhhccCccccccchHHHHHHHHHhccCch-
Confidence 99999994210 00 00011112222233322221
Q ss_pred cHHHHHHHHHHHHhccccCCCCCCCCCCCCCC-cccCCCCCCCCHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhccc
Q 026485 113 NCLAIRKATDFLLKIQCEDGGWGESYRSCPNK-KYIPLDGNRSNLVQTAWAMMSLIHAGQMERDPTPLHRAAKLLINSQL 191 (238)
Q Consensus 113 ~~~~i~~a~~~L~~~Q~~dGgw~~~~~~~~~~-~y~~~~~~~~~~~~Ta~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~ 191 (238)
....+.+ ++.+.+.-.+.=.|.........+ .|.+ ....-++..|+|||++++...... .+...++||.++|+
T Consensus 1116 a~~~~~~-l~~~a~~~~d~~~~~~~~~~~~~~~~~~~-q~~s~~VE~tsYaLL~~~~~~~~~----~~~pivrWl~~qr~ 1189 (1436)
T KOG1366|consen 1116 AAKALAK-LKSLARVEGDRRYWWASALKAKNAVKYSP-QARSIDVETTAYALLAYLLLAQVD----YALPIVRWLVEQRN 1189 (1436)
T ss_pred HHHHHHh-hhhhhcccCCceeeeeccccccCcccCCC-ccchhhccchHHHHHHHHHhcccC----cCchhHhhhhhhhc
Confidence 1222222 222222211111233221111000 0111 123467899999999888776543 34457999999999
Q ss_pred CCCCCCCCccccccCCccccccCCchhhHHHHHHHHHHHhc
Q 026485 192 EDGDFPQQELTGVFMENCMLHYPIYRNIFPMWALAEYRSRL 232 (238)
Q Consensus 192 ~dGgw~~~~~~~~~~~~~~~~~~~~~~~~~l~aL~~~~~~~ 232 (238)
..|||...+. ++++|.||.+|+...
T Consensus 1190 ~~GGf~STQd----------------TvvalqaLs~y~~~~ 1214 (1436)
T KOG1366|consen 1190 ALGGFSSTQD----------------TVVALQALSEYAALS 1214 (1436)
T ss_pred ccCceeehHH----------------HHHHHHHHHHhhhhc
Confidence 9999998763 899999999997654
No 54
>KOG0367 consensus Protein geranylgeranyltransferase Type I, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=9.4e-09 Score=86.25 Aligned_cols=141 Identities=22% Similarity=0.282 Sum_probs=90.2
Q ss_pred cCCCcchHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHhcccCCCCcccc-----cccchhhhHHHHHHHHHccc
Q 026485 35 EYDKVECTASALKAMTLFKKLYPKHRTKEVKNFIAKATKFIEDIQKSDGSWYGSW-----GICFTYAAWFAISGLVAAKK 109 (238)
Q Consensus 35 ~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~~dG~w~~~~-----~~~~~~~T~~al~aL~~~g~ 109 (238)
+.+....|..+|..|..++.. .. .-..+..++++..+|++||+|-... +..++|+.+.+..-|.....
T Consensus 101 ~~~~lA~Ty~sl~~L~~lGdd---Ls----rlDrksil~~v~~~Q~~dGsF~~~~~GSe~DmRFvYcA~aI~ymLd~~s~ 173 (347)
T KOG0367|consen 101 NEPHLAMTYTSLACLVILGDD---LS----RLDRKSILRFVSACQRPDGSFVSINVGSESDMRFVYCAVAICYMLDFWSG 173 (347)
T ss_pred cchhHHHHHHHHHHHHHHcch---Hh----hhhHHHHHHHHHHhcCCCCceeecCCCCchhhHHHHHHHHHHHHhccccc
Confidence 444445566666666666532 11 1123446889999999999995321 12245543333222221111
Q ss_pred cCccHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcccCCCCCCCCHHHHHHHHHHHHHhCCC--CC--ChHHHHHHHHH
Q 026485 110 TYSNCLAIRKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQM--ER--DPTPLHRAAKL 185 (238)
Q Consensus 110 ~~~~~~~i~~a~~~L~~~Q~~dGgw~~~~~~~~~~~y~~~~~~~~~~~~Ta~al~aL~~~g~~--~~--~~~~v~~a~~~ 185 (238)
..-++++.||.++|+=||||+..+ ++++..-.|.+||.+|...+.. +. +...++|.++|
T Consensus 174 -----iD~ek~~~yI~~~q~YdgGfg~~p------------g~EsHgG~TfCAlAsL~L~~~l~~e~l~~~~~~erlirW 236 (347)
T KOG0367|consen 174 -----IDKEKLIGYIRSSQRYDGGFGQHP------------GGESHGGATFCALASLALMGKLIPEELSNTSKVERLIRW 236 (347)
T ss_pred -----cCHHHHHHHHHHhhccccccccCC------------CCCCCcchhHHHHHHHHHHhhhhhhhhccccCHHHHHHH
Confidence 114799999999999999998754 3344555788888888776654 11 11248999999
Q ss_pred HHhcccCCCCCCCC
Q 026485 186 LINSQLEDGDFPQQ 199 (238)
Q Consensus 186 L~~~Q~~dGgw~~~ 199 (238)
++.+|..+|||.-.
T Consensus 237 li~RQ~~sgGfqGR 250 (347)
T KOG0367|consen 237 LIQRQVSSGGFQGR 250 (347)
T ss_pred HHHHhhccCCcCCC
Confidence 99999999999743
No 55
>KOG0367 consensus Protein geranylgeranyltransferase Type I, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=2e-08 Score=84.32 Aligned_cols=118 Identities=20% Similarity=0.203 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHhcccCCCCcccc-cccchhhhHHHHHHHHHccccC----ccHHHHHHHHHHHHhccccCCCCCCCCCCC
Q 026485 67 FIAKATKFIEDIQKSDGSWYGSW-GICFTYAAWFAISGLVAAKKTY----SNCLAIRKATDFLLKIQCEDGGWGESYRSC 141 (238)
Q Consensus 67 ~i~~a~~~L~~~Q~~dG~w~~~~-~~~~~~~T~~al~aL~~~g~~~----~~~~~i~~a~~~L~~~Q~~dGgw~~~~~~~ 141 (238)
.-++++.||.++|+-||+|+... ++.+.-.|..++.+|+.+++.. .++..++|.+.|++.+|..+|||.+..
T Consensus 175 D~ek~~~yI~~~q~YdgGfg~~pg~EsHgG~TfCAlAsL~L~~~l~~e~l~~~~~~erlirWli~RQ~~sgGfqGR~--- 251 (347)
T KOG0367|consen 175 DKEKLIGYIRSSQRYDGGFGQHPGGESHGGATFCALASLALMGKLIPEELSNTSKVERLIRWLIQRQVSSGGFQGRT--- 251 (347)
T ss_pred CHHHHHHHHHHhhccccccccCCCCCCCcchhHHHHHHHHHHhhhhhhhhccccCHHHHHHHHHHHhhccCCcCCCC---
Confidence 35788999999999999996433 3455557888888898887752 133448999999999999999997653
Q ss_pred CCCcccCCCCCCCCHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcccCC-CCCCC
Q 026485 142 PNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMERDPTPLHRAAKLLINSQLED-GDFPQ 198 (238)
Q Consensus 142 ~~~~y~~~~~~~~~~~~Ta~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~~d-Ggw~~ 198 (238)
....+.....|+...|...+...-. .-.+--+||+++|..- |||..
T Consensus 252 ---------NKp~DTCYaFWigasLklL~~~~~~--d~~~lr~fll~~Q~~~iGGFsK 298 (347)
T KOG0367|consen 252 ---------NKPVDTCYAFWIGASLKLLDADWLI--DKQVLRKFLLSTQDKLIGGFSK 298 (347)
T ss_pred ---------CCCchhHHHHHHHHHHHHccchHhh--hHHHHHHHHHHhhhhhcCcccC
Confidence 2345556667777777766553321 3445678999999886 88763
No 56
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=98.89 E-value=3.4e-09 Score=90.03 Aligned_cols=152 Identities=13% Similarity=0.199 Sum_probs=85.8
Q ss_pred chHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHhcccCCCCcccccc------cchh---hhHHHHHHHHHccc-
Q 026485 40 ECTASALKAMTLFKKLYPKHRTKEVKNFIAKATKFIEDIQKSDGSWYGSWGI------CFTY---AAWFAISGLVAAKK- 109 (238)
Q Consensus 40 d~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~~dG~w~~~~~~------~~~~---~T~~al~aL~~~g~- 109 (238)
+.|...|..|+.+.... ..+++.+++.|+++||++.|-++|||+-.|.. ..++ ....+|.-|..+..
T Consensus 39 ~aT~~ei~fLa~~y~~t---~d~~y~~A~~kgl~ylL~aQypnGGWPQ~yP~~~~Y~~~ITfNDdam~~vl~lL~~v~~~ 115 (289)
T PF09492_consen 39 DATTTEIRFLARVYQAT---KDPRYREAFLKGLDYLLKAQYPNGGWPQFYPLRGGYHDHITFNDDAMVNVLELLRDVAEG 115 (289)
T ss_dssp GTTHHHHHHHHHHHHHC---G-HHHHHHHHHHHHHHHHHS-TTS--BSECS--SGGGGSEE-GGGHHHHHHHHHHHHHCT
T ss_pred hhHHHHHHHHHHHHHHh---CChHHHHHHHHHHHHHHHhhCCCCCCCccCCCCCCCCCceEEccHHHHHHHHHHHHHHhh
Confidence 57888999999887642 45668899999999999999999999754321 1122 23345555554321
Q ss_pred --cC---------ccHHHHHHHHHHHHhccccC----CCCCCCCCCC-----CCCcccCCCCCCCCHHHHHHHHHHHHHh
Q 026485 110 --TY---------SNCLAIRKATDFLLKIQCED----GGWGESYRSC-----PNKKYIPLDGNRSNLVQTAWAMMSLIHA 169 (238)
Q Consensus 110 --~~---------~~~~~i~~a~~~L~~~Q~~d----Ggw~~~~~~~-----~~~~y~~~~~~~~~~~~Ta~al~aL~~~ 169 (238)
.. ....+++|++++|+++|... -+|....... ....|.+ .. -....|+-++..|...
T Consensus 116 ~~~~~~v~~~~~~r~~~A~~kgi~ciL~tQi~~~g~~t~W~qQhD~~Tl~Pa~AR~yE~--pS-ls~~ES~~iv~~LM~~ 192 (289)
T PF09492_consen 116 KGDFAFVDESLRARARAAVDKGIDCILKTQIRQNGKLTAWCQQHDEVTLQPAWARAYEP--PS-LSGSESVGIVRFLMSL 192 (289)
T ss_dssp -TTSTTS-HHHHHHHHHHHHHHHHHHHHHS-EETTEE----SEE-TTT-SB---STT----SS-EECCCHHHHHHHHCTS
T ss_pred cCCccccCHHHHHHHHHHHHHHHHHHHHHHcccCCCCCchhhccCcccccccccccCCC--cc-cccccHHHHHHHHhcC
Confidence 11 24688999999999999832 3465432211 1122322 00 0122455556666555
Q ss_pred CCCC-CChHHHHHHHHHHHhcccCCCCCC
Q 026485 170 GQME-RDPTPLHRAAKLLINSQLEDGDFP 197 (238)
Q Consensus 170 g~~~-~~~~~v~~a~~~L~~~Q~~dGgw~ 197 (238)
.... +...+|+.|++||.+...++.-|.
T Consensus 193 ~~ps~~v~~aI~~AvaWl~~~ki~g~~~~ 221 (289)
T PF09492_consen 193 PNPSPEVLAAIEAAVAWLESVKIPGKRWE 221 (289)
T ss_dssp SS--HHHHHHHHHHHHHHCCTSEEEEEE-
T ss_pred CCCCHHHHHHHHHHHHHHHhCcCCCceeE
Confidence 4332 112589999999998887766543
No 57
>COG1689 Uncharacterized protein conserved in archaea [Function unknown]
Probab=98.73 E-value=1.8e-07 Score=75.43 Aligned_cols=47 Identities=17% Similarity=0.187 Sum_probs=38.2
Q ss_pred CCCHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcccCCCCCCCCcccc
Q 026485 153 RSNLVQTAWAMMSLIHAGQMERDPTPLHRAAKLLINSQLEDGDFPQQELTG 203 (238)
Q Consensus 153 ~~~~~~Ta~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~~dGgw~~~~~~~ 203 (238)
++.+..|-||+..|...+... .+.+-++||.+.||+||||..+..-|
T Consensus 208 PPYiE~t~ya~r~lelL~~k~----~i~~~~rFI~slqN~nGGFRRS~~~G 254 (274)
T COG1689 208 PPYIEPTFYALRGLELLGGKY----CISDHIRFIRSLQNQNGGFRRSYELG 254 (274)
T ss_pred CCccchHHHHHhHHHHHccCc----CchHHHHHHHHhhcCCCCeeeeEecc
Confidence 466788999999998877653 57778999999999999999775444
No 58
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family.; InterPro: IPR001330 The beta subunit of the farnesyltransferases is responsible for peptide binding. Squalene-hopene cyclase is a bacterial enzyme that catalyzes the cyclization of squalene into hopene, a key step in hopanoid (triterpenoid) metabolism []. Lanosterol synthase (5.4.99.7 from EC) (oxidosqualene-lanosterol cyclase) catalyzes the cyclization of (S)-2,3-epoxysqualene to lanosterol, the initial precursor of cholesterol, steroid hormones and vitamin D in vertebrates and of ergosterol in fungi []. Cycloartenol synthase () (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ....
Probab=98.47 E-value=4.9e-07 Score=55.37 Aligned_cols=42 Identities=36% Similarity=0.496 Sum_probs=36.3
Q ss_pred HHHHHHHHHhccccCCCCCCCCCCCCCCcccCCCCCCCCHHHHHHHHHHHHHhC
Q 026485 117 IRKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAG 170 (238)
Q Consensus 117 i~~a~~~L~~~Q~~dGgw~~~~~~~~~~~y~~~~~~~~~~~~Ta~al~aL~~~g 170 (238)
++++++||+++|++||||+..+ +..+++..|.+++.+|...+
T Consensus 3 ~~~~~~~l~~~Q~~dGGf~~~~------------~~~~d~~~t~~~~~~L~llg 44 (44)
T PF00432_consen 3 VEKLIRFLLSCQNPDGGFGGRP------------GGESDTCYTYCALAALSLLG 44 (44)
T ss_dssp HHHHHHHHHHTBBTTSSBBSST------------TSSBBHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCCCCCCCCC------------CCCCChHHHHHHHHHHHHcC
Confidence 6899999999999999998763 44688999999999997653
No 59
>PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals. Absorption, plasma transport and cellular uptake of Cbl in mammals involves three Cbl-transporting proteins, which are listed below in order of increasing Cbl-specificity: Haptocorrin (cobalophilin), which binds Cbl and Cbl-derivatives such as cobinamide; it may play a role in preventing the absorption of cobalamin analogues produced by bacteria. Transcobalamin (TC), which transport Cbl from blood to cells. Intrinsic factor (IF), which promotes Cbl absorption in the ileum by specific receptor-mediated endocytosis. The structure of TC reveals a two-domain structure, an N-terminal alpha(6)-alpha(6) barrel, and a smaller C-terminal domain []. Many interactions between Cbl and its binding site in the interface of the two domains are conserved among the other Cbl transporters. Specificity for Cbl between the different transporters may reside in a beta-hairpin motif found in the smaller C-terminal domain []. ; GO: 0031419 cobalamin binding, 0015889 cobalamin transport; PDB: 3KQ4_A 2PMV_A 2BB5_A 2V3N_A 2BBC_A 2BB6_D 2V3P_A.
Probab=98.46 E-value=1.9e-06 Score=74.61 Aligned_cols=107 Identities=23% Similarity=0.223 Sum_probs=80.8
Q ss_pred cCCCcchHHHHHHHHHHHHhhCCC--cchHHHHHHHHHHHHHHHHhcccCCCCcccccccchhhhHHHHHHHHHccccCc
Q 026485 35 EYDKVECTASALKAMTLFKKLYPK--HRTKEVKNFIAKATKFIEDIQKSDGSWYGSWGICFTYAAWFAISGLVAAKKTYS 112 (238)
Q Consensus 35 ~~~~~d~Ta~~l~aL~~~~~~~~~--~~~~~~~~~i~~a~~~L~~~Q~~dG~w~~~~~~~~~~~T~~al~aL~~~g~~~~ 112 (238)
++-+||++|.++.||..+.+..+. ....++..+|++.++.|++.|++||.| +++|.|+.|+.||...+..+.
T Consensus 182 ~~~sVDT~AmA~LALtCv~~~~~~~~~~~~~i~~~i~~~~~kIl~~q~~~G~~------GNiySTglAmQAL~~~~~~~~ 255 (326)
T PF01122_consen 182 SQFSVDTGAMAVLALTCVKNSNPNGPELRRRIQQAIRSLVEKILSQQKPNGLF------GNIYSTGLAMQALSVSPSPPS 255 (326)
T ss_dssp STCHHHHHHHHHHHHHHHHTTTSTTGGGHHHHHHHHHHHHHHHHHTB-TTS-B------SSTTTHHHHHHHHTT-SS-SS
T ss_pred CCCCccHHHHHHHHHHHHhccCcCcHhHHHHHHHHHHHHHHHHHHhcCCCCcc------cchhhHHHHHHHHhcCCCCCc
Confidence 456689999999999998875332 123467889999999999999999999 378899999999999988653
Q ss_pred c-HHHHHHHHHHHHhccccCCCCCCCCCCCCCCcccCCCCCCCCHHHHHHHHHHHH
Q 026485 113 N-CLAIRKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLI 167 (238)
Q Consensus 113 ~-~~~i~~a~~~L~~~Q~~dGgw~~~~~~~~~~~y~~~~~~~~~~~~Ta~al~aL~ 167 (238)
. .....++.++|++. .++|.|.. +..++-+|-+|.
T Consensus 256 ~~~w~C~k~~~~ll~~-i~~G~F~n-------------------P~a~aQiLPaL~ 291 (326)
T PF01122_consen 256 ESEWNCQKALDALLKE-ISQGAFQN-------------------PMAIAQILPALN 291 (326)
T ss_dssp HHHHHHHHHHHHHHHH-HTTTTT-S-------------------HHHHHHHHHHHT
T ss_pred chhhHHHHHHHHHHHH-hhcCCCCC-------------------HHHHHHHHHHHc
Confidence 2 47789999999995 46899853 556776666663
No 60
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family.; InterPro: IPR001330 The beta subunit of the farnesyltransferases is responsible for peptide binding. Squalene-hopene cyclase is a bacterial enzyme that catalyzes the cyclization of squalene into hopene, a key step in hopanoid (triterpenoid) metabolism []. Lanosterol synthase (5.4.99.7 from EC) (oxidosqualene-lanosterol cyclase) catalyzes the cyclization of (S)-2,3-epoxysqualene to lanosterol, the initial precursor of cholesterol, steroid hormones and vitamin D in vertebrates and of ergosterol in fungi []. Cycloartenol synthase () (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ....
Probab=98.18 E-value=4.6e-06 Score=51.00 Aligned_cols=42 Identities=24% Similarity=0.281 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhcccCCCCccccc-ccchhhhHHHHHHHHHcc
Q 026485 67 FIAKATKFIEDIQKSDGSWYGSWG-ICFTYAAWFAISGLVAAK 108 (238)
Q Consensus 67 ~i~~a~~~L~~~Q~~dG~w~~~~~-~~~~~~T~~al~aL~~~g 108 (238)
.++++++||+++|++||+|.+.++ ..++..|..++.+|..+|
T Consensus 2 d~~~~~~~l~~~Q~~dGGf~~~~~~~~d~~~t~~~~~~L~llg 44 (44)
T PF00432_consen 2 DVEKLIRFLLSCQNPDGGFGGRPGGESDTCYTYCALAALSLLG 44 (44)
T ss_dssp HHHHHHHHHHHTBBTTSSBBSSTTSSBBHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHCCCCCCCCCCCCCCCChHHHHHHHHHHHHcC
Confidence 368899999999999999987665 447888999999987664
No 61
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=98.16 E-value=8.8e-06 Score=69.40 Aligned_cols=105 Identities=19% Similarity=0.157 Sum_probs=55.2
Q ss_pred hhHHHHHHHHHccc---cCccHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcccCCCCCCCCHHHHHHHHHHHHHh--C
Q 026485 96 AAWFAISGLVAAKK---TYSNCLAIRKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHA--G 170 (238)
Q Consensus 96 ~T~~al~aL~~~g~---~~~~~~~i~~a~~~L~~~Q~~dGgw~~~~~~~~~~~y~~~~~~~~~~~~Ta~al~aL~~~--g 170 (238)
.|...|.-|+.+-. ...+.+++.|+++||++.|.++|||...+... ..|...- ...|. ...-+|.-|..+ +
T Consensus 40 aT~~ei~fLa~~y~~t~d~~y~~A~~kgl~ylL~aQypnGGWPQ~yP~~--~~Y~~~I-TfNDd-am~~vl~lL~~v~~~ 115 (289)
T PF09492_consen 40 ATTTEIRFLARVYQATKDPRYREAFLKGLDYLLKAQYPNGGWPQFYPLR--GGYHDHI-TFNDD-AMVNVLELLRDVAEG 115 (289)
T ss_dssp TTHHHHHHHHHHHHHCG-HHHHHHHHHHHHHHHHHS-TTS--BSECS----SGGGGSE-E-GGG-HHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhCCCCCCCccCCCC--CCCCCce-EEccH-HHHHHHHHHHHHHhh
Confidence 56667777765432 22367899999999999999999998754321 1121100 00111 233334444333 2
Q ss_pred CCCC----------ChHHHHHHHHHHHhcccC----CCCCCCCccccc
Q 026485 171 QMER----------DPTPLHRAAKLLINSQLE----DGDFPQQELTGV 204 (238)
Q Consensus 171 ~~~~----------~~~~v~~a~~~L~~~Q~~----dGgw~~~~~~~~ 204 (238)
..+- -.++++|+++||+.+|.. --+|.++++.-+
T Consensus 116 ~~~~~~v~~~~~~r~~~A~~kgi~ciL~tQi~~~g~~t~W~qQhD~~T 163 (289)
T PF09492_consen 116 KGDFAFVDESLRARARAAVDKGIDCILKTQIRQNGKLTAWCQQHDEVT 163 (289)
T ss_dssp -TTSTTS-HHHHHHHHHHHHHHHHHHHHHS-EETTEE----SEE-TTT
T ss_pred cCCccccCHHHHHHHHHHHHHHHHHHHHHHcccCCCCCchhhccCccc
Confidence 2211 125899999999999983 246998876664
No 62
>PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals. Absorption, plasma transport and cellular uptake of Cbl in mammals involves three Cbl-transporting proteins, which are listed below in order of increasing Cbl-specificity: Haptocorrin (cobalophilin), which binds Cbl and Cbl-derivatives such as cobinamide; it may play a role in preventing the absorption of cobalamin analogues produced by bacteria. Transcobalamin (TC), which transport Cbl from blood to cells. Intrinsic factor (IF), which promotes Cbl absorption in the ileum by specific receptor-mediated endocytosis. The structure of TC reveals a two-domain structure, an N-terminal alpha(6)-alpha(6) barrel, and a smaller C-terminal domain []. Many interactions between Cbl and its binding site in the interface of the two domains are conserved among the other Cbl transporters. Specificity for Cbl between the different transporters may reside in a beta-hairpin motif found in the smaller C-terminal domain []. ; GO: 0031419 cobalamin binding, 0015889 cobalamin transport; PDB: 3KQ4_A 2PMV_A 2BB5_A 2V3N_A 2BBC_A 2BB6_D 2V3P_A.
Probab=97.67 E-value=0.00036 Score=60.55 Aligned_cols=124 Identities=16% Similarity=0.150 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHhcccCCCCcccccccchhhhHHHHHHHHHccccC--------cc
Q 026485 42 TASALKAMTLFKKLYPKHRTKEVKNFIAKATKFIEDIQKSDGSWYGSWGICFTYAAWFAISGLVAAKKTY--------SN 113 (238)
Q Consensus 42 Ta~~l~aL~~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~~dG~w~~~~~~~~~~~T~~al~aL~~~g~~~--------~~ 113 (238)
-+..+.||+..+.. .....+.-|....+.+..+.+. -.+-.+|.+++||.-+.... ..
T Consensus 148 ~sL~vLALCv~~~~-----------~~~~~v~kL~~~~~~~~~~~~~---~sVDT~AmA~LALtCv~~~~~~~~~~~~~i 213 (326)
T PF01122_consen 148 YSLGVLALCVHNKR-----------VSLSVVAKLLKAENHNFYHGSQ---FSVDTGAMAVLALTCVKNSNPNGPELRRRI 213 (326)
T ss_dssp HHHHHHHHHHTTHH-----------HHHHHHHHHHHHHHSSTSS-ST---CHHHHHHHHHHHHHHHHTTTSTTGGGHHHH
T ss_pred hHHHHHHHHccCCC-----------cCHHHHHHHHHHHHhhcccCCC---CCccHHHHHHHHHHHHhccCcCcHhHHHHH
Confidence 45666777765432 3334455555655666222211 13335577777776443211 24
Q ss_pred HHHHHHHHHHHHhccccCCCCCCCCCCCCCCcccCCCCCCCCHHHHHHHHHHHHHhCCCCCC-hHHHHHHHHHHHhcccC
Q 026485 114 CLAIRKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMERD-PTPLHRAAKLLINSQLE 192 (238)
Q Consensus 114 ~~~i~~a~~~L~~~Q~~dGgw~~~~~~~~~~~y~~~~~~~~~~~~Ta~al~aL~~~g~~~~~-~~~v~~a~~~L~~~Q~~ 192 (238)
..++++.++.|++.|.+||.+|. ++.|+.|+.||...+..+.. .-.-.+++++|+. +.+
T Consensus 214 ~~~i~~~~~kIl~~q~~~G~~GN-------------------iySTglAmQAL~~~~~~~~~~~w~C~k~~~~ll~-~i~ 273 (326)
T PF01122_consen 214 QQAIRSLVEKILSQQKPNGLFGN-------------------IYSTGLAMQALSVSPSPPSESEWNCQKALDALLK-EIS 273 (326)
T ss_dssp HHHHHHHHHHHHHTB-TTS-BSS-------------------TTTHHHHHHHHTT-SS-SSHHHHHHHHHHHHHHH-HHT
T ss_pred HHHHHHHHHHHHHhcCCCCcccc-------------------hhhHHHHHHHHhcCCCCCcchhhHHHHHHHHHHH-Hhh
Confidence 56778888889999999999975 46799999999998876532 1257889999998 467
Q ss_pred CCCCCCC
Q 026485 193 DGDFPQQ 199 (238)
Q Consensus 193 dGgw~~~ 199 (238)
+|.|...
T Consensus 274 ~G~F~nP 280 (326)
T PF01122_consen 274 QGAFQNP 280 (326)
T ss_dssp TTTT-SH
T ss_pred cCCCCCH
Confidence 9999864
No 63
>COG1689 Uncharacterized protein conserved in archaea [Function unknown]
Probab=97.67 E-value=0.00031 Score=57.07 Aligned_cols=79 Identities=23% Similarity=0.284 Sum_probs=56.7
Q ss_pred HHhcccCCCCccccc--ccchhhhHHHHHHHHHccccCccHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcccCCCCCC
Q 026485 76 EDIQKSDGSWYGSWG--ICFTYAAWFAISGLVAAKKTYSNCLAIRKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNR 153 (238)
Q Consensus 76 ~~~Q~~dG~w~~~~~--~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~dGgw~~~~~~~~~~~y~~~~~~~ 153 (238)
..+.-++|+|..... +.+...|.+++..|..++..+ .+.+-++||.+.||+||||..+. ..+.
T Consensus 191 e~~c~~~Ggf~~~P~syPPYiE~t~ya~r~lelL~~k~----~i~~~~rFI~slqN~nGGFRRS~-----------~~GI 255 (274)
T COG1689 191 ELCCGDWGGFTEVPNSYPPYIEPTFYALRGLELLGGKY----CISDHIRFIRSLQNQNGGFRRSY-----------ELGI 255 (274)
T ss_pred HhccccCCCcccCCCCCCCccchHHHHHhHHHHHccCc----CchHHHHHHHHhhcCCCCeeeeE-----------eccc
Confidence 344566777743222 234457888999998887654 25678999999999999997642 2567
Q ss_pred CCHHHHHHHHHHHHHh
Q 026485 154 SNLVQTAWAMMSLIHA 169 (238)
Q Consensus 154 ~~~~~Ta~al~aL~~~ 169 (238)
|+...|-+||..|...
T Consensus 256 St~e~tYrAl~~L~~l 271 (274)
T COG1689 256 STFENTYRALASLASL 271 (274)
T ss_pred cchHHHHHHHHHHHHH
Confidence 8899999999887653
No 64
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=97.40 E-value=0.0081 Score=52.73 Aligned_cols=184 Identities=18% Similarity=0.170 Sum_probs=103.9
Q ss_pred cchHHHHHHHHHHHHhhCCCcchHH-HHHHHHHHHHHHHHhccc-CCCCcccccc-------cchh--hhHHHHHHHHHc
Q 026485 39 VECTASALKAMTLFKKLYPKHRTKE-VKNFIAKATKFIEDIQKS-DGSWYGSWGI-------CFTY--AAWFAISGLVAA 107 (238)
Q Consensus 39 ~d~Ta~~l~aL~~~~~~~~~~~~~~-~~~~i~~a~~~L~~~Q~~-dG~w~~~~~~-------~~~~--~T~~al~aL~~~ 107 (238)
+|.-.+++..|..+++... +++ .+.+++....+......+ +|-|...+.. ...+ +.+-++.+|..+
T Consensus 123 iD~~~M~~p~l~~~~~~tg---d~~~~~~a~~q~~~~~~~~~d~~tGl~~h~~~~~~~~~~s~~~WsRG~gW~~~Gl~~~ 199 (336)
T PF07470_consen 123 IDGMYMNLPFLAWAGKLTG---DPKYLDEAVRQFRLTRKYLYDPETGLYYHGYTYQGYADWSDSFWSRGNGWAIYGLAEV 199 (336)
T ss_dssp TTHHHHHHHHHHHHHHHHT---GHHHHHHHHHHHHHHHHHHB-TTTSSBESEEETTSSSTTST--BHHHHHHHHHHHHHH
T ss_pred eccccccHHHHHHHHHHHC---CcHHHHHHHHHHHHHHHhccCCCCCceeeccCCCCCcCcccccCcchhhHHHHHHHHH
Confidence 3445567888887776422 122 345666666666666654 6777422210 1112 334455555532
Q ss_pred c----cc----CccHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcccCCCCCCCCHHHHHHHHHHHHH---hCCCCC--
Q 026485 108 K----KT----YSNCLAIRKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIH---AGQMER-- 174 (238)
Q Consensus 108 g----~~----~~~~~~i~~a~~~L~~~Q~~dGgw~~~~~~~~~~~y~~~~~~~~~~~~Ta~al~aL~~---~g~~~~-- 174 (238)
- .. .......++.++.|.+.|.+||.|........ +....+.+.||.+..+|+. .+..+.
T Consensus 200 l~~lp~~~~~~~~~~~~~~~~~~~l~~~q~~~G~w~~~~~~~~-------~~~~~etSatA~~a~~l~~gi~~g~~d~~~ 272 (336)
T PF07470_consen 200 LEYLPEDHPERDELLEIAKKLADALARYQDEDGLWYQDLDDPD-------PGNYRETSATAMFAYGLLRGIRLGLLDPEE 272 (336)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHTTSTTTSBEBSBTTTTT-------TTS-BEHHHHHHHHHHHHHHHHTTSSTHHH
T ss_pred HHHhcchhhhHHHHHHHHHHHHHHHHhcCCCCCCcceecCCCC-------CCCcccHHHHHHHHHHHHHHHHcCCCccHH
Confidence 1 11 01335567778889999999999975432110 1235678888888888854 333211
Q ss_pred ChHHHHHHHHHHHhc-ccCCCC--CCCCccccc---cCCccccccCCchhhHHHHHHHHHHHhc
Q 026485 175 DPTPLHRAAKLLINS-QLEDGD--FPQQELTGV---FMENCMLHYPIYRNIFPMWALAEYRSRL 232 (238)
Q Consensus 175 ~~~~v~~a~~~L~~~-Q~~dGg--w~~~~~~~~---~~~~~~~~~~~~~~~~~l~aL~~~~~~~ 232 (238)
-.+.++|+++.|+++ -++||. +........ |..+-......|-..+.|.||.++.+.|
T Consensus 273 y~~~a~~a~~~l~~~~~~~dG~~~~~~~~~~~~~~~Y~~~~~~~~~~~G~g~fl~A~~e~~r~~ 336 (336)
T PF07470_consen 273 YRPAAEKALEALLSNAIDPDGKLGLKGVCGGTPVGGYQGRDYNVNDPYGDGYFLLALAEYERLL 336 (336)
T ss_dssp HHHHHHHHHHHHHHCEB-TTSSSBBTCEBETTTS-SHHTEEEECCSHHHHHHHHHHHHHHHCGH
T ss_pred HHHHHHHHHHHHHhCccCCCCCeEEeeeEeecCCCCCCCCCCCCCcCcHHHHHHHHHHHHHHhC
Confidence 125899999999999 778887 544321111 1111122333566889999999987643
No 65
>PLN02592 ent-copalyl diphosphate synthase
Probab=97.21 E-value=0.0012 Score=63.94 Aligned_cols=84 Identities=15% Similarity=0.262 Sum_probs=56.7
Q ss_pred ccchhhhHHHHHHHHHccccCccHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcccCCCCCCCCHHHHHHHHHHHHHhC
Q 026485 91 ICFTYAAWFAISGLVAAKKTYSNCLAIRKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAG 170 (238)
Q Consensus 91 ~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~dGgw~~~~~~~~~~~y~~~~~~~~~~~~Ta~al~aL~~~g 170 (238)
....|.||.+ |+.-.-... ..+..-..++||+++|++||+|+..... .....+..|.-|++||..-.
T Consensus 94 S~S~YDTAWV--AmVp~~~g~-~~p~FP~~~~wIl~nQ~~DGsWG~~~~~----------~~~D~ll~TLAcvlAL~~w~ 160 (800)
T PLN02592 94 SISAYDTAWV--ALVEDINGS-GTPQFPSSLQWIANNQLSDGSWGDAYLF----------SAHDRLINTLACVVALKSWN 160 (800)
T ss_pred CCcHHHhHHH--hhcccCCCC-CCCCCHHHHHHHHHccCCCCCCCCCCCc----------chHHHHHhHHHHHHHHHHhh
Confidence 3567899884 333211111 1244568999999999999999874210 01244779999999998765
Q ss_pred CCCCChHHHHHHHHHHHhcc
Q 026485 171 QMERDPTPLHRAAKLLINSQ 190 (238)
Q Consensus 171 ~~~~~~~~v~~a~~~L~~~Q 190 (238)
.. +..++|++.||.++-
T Consensus 161 ~~---~~~i~rGl~fi~~nl 177 (800)
T PLN02592 161 LH---PEKCEKGMSFFRENI 177 (800)
T ss_pred cc---HHHHHHHHHHHHHHH
Confidence 43 247999999998754
No 66
>KOG1366 consensus Alpha-macroglobulin [Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.00088 Score=68.49 Aligned_cols=98 Identities=20% Similarity=0.277 Sum_probs=74.0
Q ss_pred chHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHhcccCCCCcccccc----cchhhhHHHHHHHHHccccCc-cH
Q 026485 40 ECTASALKAMTLFKKLYPKHRTKEVKNFIAKATKFIEDIQKSDGSWYGSWGI----CFTYAAWFAISGLVAAKKTYS-NC 114 (238)
Q Consensus 40 d~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~~dG~w~~~~~~----~~~~~T~~al~aL~~~g~~~~-~~ 114 (238)
..+-++++.|-.-.+..+..+ .+....+..+..-++..+++||+| ..|+. ..++.|+++|..|..+..... +.
T Consensus 946 aPni~v~~YL~~t~q~~~~~k-~ka~~~l~~GyqrqL~yk~~DgSy-SaFg~~~~~~stWLtafvlr~f~~a~~~i~id~ 1023 (1436)
T KOG1366|consen 946 APNIYVLKYLPKTNQLTPELK-RKALKFLEQGYQRQLTYKRADGSY-SAFGSSDRSGSTWLTAFVLRVFSQAKEYIFIDP 1023 (1436)
T ss_pred cchhhHHHHHhhhhccChhHH-HHHHHHHHHHHHHHHhhhccCCCh-hhhcCCCCcccHHHHHHHHHHhhhccCceEecH
Confidence 457788888887665433322 223457777888888999999999 34443 467899999999999876432 45
Q ss_pred HHHHHHHHHHHhccccCCCCCCCCC
Q 026485 115 LAIRKATDFLLKIQCEDGGWGESYR 139 (238)
Q Consensus 115 ~~i~~a~~~L~~~Q~~dGgw~~~~~ 139 (238)
..+.+|+.||..+|.++|+|.+...
T Consensus 1024 ~~i~~a~~wl~~~Qk~~GsF~e~~~ 1048 (1436)
T KOG1366|consen 1024 NVITQALNWLSQQQKENGSFKEVGE 1048 (1436)
T ss_pred HHHHHHHHHHHHhhccCceEecccc
Confidence 7789999999999999999987643
No 67
>PLN02592 ent-copalyl diphosphate synthase
Probab=96.61 E-value=0.0028 Score=61.44 Aligned_cols=58 Identities=17% Similarity=0.142 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHhcccCCCCccccc---ccchhhhHHHHHHHHHccccCccHHHHHHHHHHHHhc
Q 026485 67 FIAKATKFIEDIQKSDGSWYGSWG---ICFTYAAWFAISGLVAAKKTYSNCLAIRKATDFLLKI 127 (238)
Q Consensus 67 ~i~~a~~~L~~~Q~~dG~w~~~~~---~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~ 127 (238)
..-++++||+..|.+||||+.... ....-.|..+|.||...+.. +..|+|++.||.++
T Consensus 116 ~FP~~~~wIl~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~~~---~~~i~rGl~fi~~n 176 (800)
T PLN02592 116 QFPSSLQWIANNQLSDGSWGDAYLFSAHDRLINTLACVVALKSWNLH---PEKCEKGMSFFREN 176 (800)
T ss_pred CCHHHHHHHHHccCCCCCCCCCCCcchHHHHHhHHHHHHHHHHhhcc---HHHHHHHHHHHHHH
Confidence 466899999999999999964311 12234788889999876654 46789999998764
No 68
>TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase. Glucan 1,4-alpha-glucosidase catalyzes the hydrolysis of terminal 1,4-linked alpha-D-glucose residues from non-reducing ends of polysaccharides, releasing a beta-D-glucose monomer. Some forms of this enzyme can hydrolyze terminal 1,6- and 1,3-alpha-D-glucosidic bonds in polysaccharides as well.
Probab=96.47 E-value=0.087 Score=50.39 Aligned_cols=127 Identities=13% Similarity=0.240 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHHHhcccC--CCCcc----cc----------cccchh--hhHHHHHHHHHccccCccHHHHHHHHHHHH
Q 026485 64 VKNFIAKATKFIEDIQKSD--GSWYG----SW----------GICFTY--AAWFAISGLVAAKKTYSNCLAIRKATDFLL 125 (238)
Q Consensus 64 ~~~~i~~a~~~L~~~Q~~d--G~w~~----~~----------~~~~~~--~T~~al~aL~~~g~~~~~~~~i~~a~~~L~ 125 (238)
..+.+.+.+--|+.++..+ |++-+ .| +-.+++ ..++++.||..+|.. +..++.++||.
T Consensus 249 ~~~~~~rS~lvLK~~~d~~~~GAiIAA~Tts~pe~~g~~~n~dYryvW~RD~a~~a~AL~~~G~~----~~a~~~~~~l~ 324 (648)
T TIGR01535 249 GNSLYYVSMMILKAHEDKTNPGAYIASLSIPWGDGQADDNTGGYHLVWPRDLYQVANAFLAAGDV----DSALRSLDYLA 324 (648)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCcEEEecCCCCCccCCCCCCCceEEEehhhHHHHHHHHHHCCCH----HHHHHHHHHHH
Confidence 4467778888888777763 88732 12 112222 688999999999954 67899999999
Q ss_pred hccccCCCCCCCCCCCCCCcccCCCCCCCCHHHHHHHHHHHHHhCCCCC--ChHHHHHHHHHHHhccc--CCCCCCCC
Q 026485 126 KIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMER--DPTPLHRAAKLLINSQL--EDGDFPQQ 199 (238)
Q Consensus 126 ~~Q~~dGgw~~~~~~~~~~~y~~~~~~~~~~~~Ta~al~aL~~~g~~~~--~~~~v~~a~~~L~~~Q~--~dGgw~~~ 199 (238)
+.|.++|.|...........+. .-....|+..|.++....+... ..+.|+++++||.+.-. ..|-|.+.
T Consensus 325 ~~~~~~G~~lq~y~vdG~~~~~-----~iQlD~~g~~i~~~~~l~~~~~~~~~~~vk~aadfl~~~~p~p~~d~WEer 397 (648)
T TIGR01535 325 KVQQDNGMFPQNSWVDGKPYWT-----GIQLDETAFPILLAYRLHRYDHAFYDKMLKPAADFIVKNGPKTGQERWEEI 397 (648)
T ss_pred HHhccCCCcCceeccCCCCCCC-----CccccHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcCCCCCCCccccc
Confidence 9999999986543333222221 1334466677776554432211 12479999999998642 23557654
No 69
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=96.43 E-value=0.022 Score=49.96 Aligned_cols=128 Identities=20% Similarity=0.183 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHhhCCC-c-chHHHHHHHHHHHHHHHHhcccCCCCcccccc------cchhhhHHHHHHHHH---cccc
Q 026485 42 TASALKAMTLFKKLYPK-H-RTKEVKNFIAKATKFIEDIQKSDGSWYGSWGI------CFTYAAWFAISGLVA---AKKT 110 (238)
Q Consensus 42 Ta~~l~aL~~~~~~~~~-~-~~~~~~~~i~~a~~~L~~~Q~~dG~w~~~~~~------~~~~~T~~al~aL~~---~g~~ 110 (238)
.+.++.+|..+-+..|. . ..+++.+..++.++.|...|.+||.|...... ..+.+|+.+..+|+. .+..
T Consensus 189 ~gW~~~Gl~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~~q~~~G~w~~~~~~~~~~~~~etSatA~~a~~l~~gi~~g~~ 268 (336)
T PF07470_consen 189 NGWAIYGLAEVLEYLPEDHPERDELLEIAKKLADALARYQDEDGLWYQDLDDPDPGNYRETSATAMFAYGLLRGIRLGLL 268 (336)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTSTTTSBEBSBTTTTTTTS-BEHHHHHHHHHHHHHHHHTTSS
T ss_pred hhHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHhcCCCCCCcceecCCCCCCCcccHHHHHHHHHHHHHHHHcCCC
Confidence 56777777765443222 1 12345678888899999999999999632221 124467777777753 2322
Q ss_pred --CccHHHHHHHHHHHHhc-cccCCC--CCCCCCCCCCCcccCCCCCCCCHHHHHHHHHHHHHh
Q 026485 111 --YSNCLAIRKATDFLLKI-QCEDGG--WGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHA 169 (238)
Q Consensus 111 --~~~~~~i~~a~~~L~~~-Q~~dGg--w~~~~~~~~~~~y~~~~~~~~~~~~Ta~al~aL~~~ 169 (238)
....+.++|+++.|++. -++||. +........-..|...+....+++..++.|+|+.+.
T Consensus 269 d~~~y~~~a~~a~~~l~~~~~~~dG~~~~~~~~~~~~~~~Y~~~~~~~~~~~G~g~fl~A~~e~ 332 (336)
T PF07470_consen 269 DPEEYRPAAEKALEALLSNAIDPDGKLGLKGVCGGTPVGGYQGRDYNVNDPYGDGYFLLALAEY 332 (336)
T ss_dssp THHHHHHHHHHHHHHHHHCEB-TTSSSBBTCEBETTTS-SHHTEEEECCSHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhCccCCCCCeEEeeeEeecCCCCCCCCCCCCCcCcHHHHHHHHHHHH
Confidence 13568899999999999 778887 443321111001211112234578999999998764
No 70
>TIGR01577 oligosac_amyl oligosaccharide amylase. The name of this type of amylase is based on the characterization of an glucoamylase family enzyme from Thermoactinomyces vulgaris. The T. vulgaris enzyme was expressed in E. coli and, like other glucoamylases, it releases beta-D-glucose from starch. However, unlike previously characterized glucoamylases, this T. vulgaris amylase hydrolyzes maltooligosaccharides (maltotetraose, maltose) more efficiently than starch (PubMed: 11549021), indicating this enzyme belongs to a class of glucoamylase-type enzymes with oligosaccharide-metabolizing activity.
Probab=96.40 E-value=0.066 Score=51.05 Aligned_cols=119 Identities=15% Similarity=0.187 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHhcccC-CCCccc----------ccccchh--hhHHHHHHHHHccccCccHHHHHHHHHHHHhccccCC
Q 026485 66 NFIAKATKFIEDIQKSD-GSWYGS----------WGICFTY--AAWFAISGLVAAKKTYSNCLAIRKATDFLLKIQCEDG 132 (238)
Q Consensus 66 ~~i~~a~~~L~~~Q~~d-G~w~~~----------~~~~~~~--~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~dG 132 (238)
+.+++.+--|+..+.++ |++-+. |+-.+++ .++++++||..+|.. +.+++.++||.+.|.+||
T Consensus 256 ~~~~~Sll~Lk~~~~~~~GaiiAs~s~~~~~~~~~~Y~y~W~RD~~~~a~Al~~~G~~----~~a~~~l~~l~~~q~~~G 331 (616)
T TIGR01577 256 SLYRRSLAVLRLLTDGEYGSMIAAPEFDEDFVRCGGYAYCWGRDASYIATALDRAGYH----DRVDRFFRWAMQTQSRDG 331 (616)
T ss_pred HHHHHHHHHHHhccCCCCCcEEEcCCCCcccccCCCCceeccccHHHHHHHHHHCCCH----HHHHHHHHHHHHhhCcCC
Confidence 45666666666666655 874321 2222233 588999999999954 678999999999999999
Q ss_pred CCCCCCCCCCCCcccCCCCCCCCHHHHHHHHHHHHHh----CCCCC---ChHHHHHHHHHHHhccc
Q 026485 133 GWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHA----GQMER---DPTPLHRAAKLLINSQL 191 (238)
Q Consensus 133 gw~~~~~~~~~~~y~~~~~~~~~~~~Ta~al~aL~~~----g~~~~---~~~~v~~a~~~L~~~Q~ 191 (238)
.|.......... .+. ........++..|.++... +.... .-+.++++++|+.+...
T Consensus 332 ~~~~~~~~dG~~--~~~-~~~~Q~D~~g~~l~al~~y~~~t~d~~~~~~~~~~v~~a~~fl~~~~~ 394 (616)
T TIGR01577 332 SWQQRYYLNGRL--APL-QWGLQIDETGSILWAMDQHYRLTNDRAFLEEIWESVQKAAQYLILFID 394 (616)
T ss_pred CcceEEecCCCC--CCC-CCCccccchhHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhcc
Confidence 985432111100 000 0011222355555555322 22110 11478999999999653
No 71
>PLN02279 ent-kaur-16-ene synthase
Probab=95.63 E-value=0.011 Score=57.52 Aligned_cols=78 Identities=17% Similarity=0.051 Sum_probs=50.7
Q ss_pred CCcchHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHhcccCCCCccccc-----ccchhhhHHHHHHHHHccccC
Q 026485 37 DKVECTASALKAMTLFKKLYPKHRTKEVKNFIAKATKFIEDIQKSDGSWYGSWG-----ICFTYAAWFAISGLVAAKKTY 111 (238)
Q Consensus 37 ~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~~dG~w~~~~~-----~~~~~~T~~al~aL~~~g~~~ 111 (238)
+++..||+|-+.=.. +. +. .+..-++++||+..|.+||+|+..-. ....-.|..+|.||...+...
T Consensus 53 ~s~YDTAWvamv~~~-~~--~~------~p~Fp~~~~wil~nQ~~dGsWg~~~~~~~~~~D~ll~TlAcvlAL~~w~~~~ 123 (784)
T PLN02279 53 VSSYDTAWVAMVPSP-NS--QQ------APLFPECVKWLLENQLEDGSWGLPHDHPLLVKDALSSTLASILALKKWGVGE 123 (784)
T ss_pred CchhhhHHHHhcccC-CC--CC------CCCChHHHHHHHhcCCCCCCCCCCCCCcchhHHhhHHHHHHHHHHHHHhcCc
Confidence 345678877654332 11 00 13567899999999999999963211 122347888999998877642
Q ss_pred ccHHHHHHHHHHHHh
Q 026485 112 SNCLAIRKATDFLLK 126 (238)
Q Consensus 112 ~~~~~i~~a~~~L~~ 126 (238)
..++|++.||.+
T Consensus 124 ---~~~~~gl~fi~~ 135 (784)
T PLN02279 124 ---EQINKGLQFIEL 135 (784)
T ss_pred ---ccchhhHHHHHH
Confidence 346777777764
No 72
>PLN02279 ent-kaur-16-ene synthase
Probab=95.56 E-value=0.02 Score=55.66 Aligned_cols=84 Identities=17% Similarity=0.218 Sum_probs=54.7
Q ss_pred cchhhhHHHHHHHHHccccCccHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcccCCCCCCCCHHHHHHHHHHHHHhCC
Q 026485 92 CFTYAAWFAISGLVAAKKTYSNCLAIRKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQ 171 (238)
Q Consensus 92 ~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~dGgw~~~~~~~~~~~y~~~~~~~~~~~~Ta~al~aL~~~g~ 171 (238)
...|.||.+.+.=.. +.. ..+..-..++||+++|.+||+|+...... + -....+..|.-+++||..-..
T Consensus 53 ~s~YDTAWvamv~~~-~~~--~~p~Fp~~~~wil~nQ~~dGsWg~~~~~~----~----~~~D~ll~TlAcvlAL~~w~~ 121 (784)
T PLN02279 53 VSSYDTAWVAMVPSP-NSQ--QAPLFPECVKWLLENQLEDGSWGLPHDHP----L----LVKDALSSTLASILALKKWGV 121 (784)
T ss_pred CchhhhHHHHhcccC-CCC--CCCCChHHHHHHHhcCCCCCCCCCCCCCc----c----hhHHhhHHHHHHHHHHHHHhc
Confidence 467888776222111 211 23445689999999999999998641100 0 012447799999999988766
Q ss_pred CCCChHHHHHHHHHHHhc
Q 026485 172 MERDPTPLHRAAKLLINS 189 (238)
Q Consensus 172 ~~~~~~~v~~a~~~L~~~ 189 (238)
.+ ..+++++.||.+.
T Consensus 122 ~~---~~~~~gl~fi~~n 136 (784)
T PLN02279 122 GE---EQINKGLQFIELN 136 (784)
T ss_pred Cc---ccchhhHHHHHHH
Confidence 43 2578889988754
No 73
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=94.96 E-value=0.98 Score=40.04 Aligned_cols=96 Identities=16% Similarity=0.138 Sum_probs=65.1
Q ss_pred CCcchHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHhc-ccC-CCCccccc-------cc-chhhhHHHHHHHHH
Q 026485 37 DKVECTASALKAMTLFKKLYPKHRTKEVKNFIAKATKFIEDIQ-KSD-GSWYGSWG-------IC-FTYAAWFAISGLVA 106 (238)
Q Consensus 37 ~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q-~~d-G~w~~~~~-------~~-~~~~T~~al~aL~~ 106 (238)
....+++..|.+|+.+.+.. ..++..+..+++++||.+.- .++ |+|..... .. +.+.-++++.||+.
T Consensus 50 k~~~~~ar~i~~~a~a~~~~---~~~~~l~~A~~~~~fl~~~~~d~~~Gg~~~~~~~~g~~~~~~~~l~~~a~~l~ala~ 126 (384)
T cd00249 50 RRLWLQARQVYCFAVAYLLG---WRPEWLEAAEHGLEYLDRHGRDPDHGGWYFALDQDGRPVDATKDLYSHAFALLAAAQ 126 (384)
T ss_pred CeEEEecHHHHHHHHHHHhc---CChhHHHHHHHHHHHHHHhCcCCCCCCEEEEEcCCCCCcccccchHHHHHHHHHHHH
Confidence 33567999999999987642 22345578899999999854 446 99853221 11 35677889999887
Q ss_pred cccc---CccHHHHHHHHHHHHhccc-cCCCCC
Q 026485 107 AKKT---YSNCLAIRKATDFLLKIQC-EDGGWG 135 (238)
Q Consensus 107 ~g~~---~~~~~~i~~a~~~L~~~Q~-~dGgw~ 135 (238)
+... ....+.+++.+++|.+... ++|++.
T Consensus 127 ~~~at~d~~~l~~A~~~~~~l~~~~~~~~g~~~ 159 (384)
T cd00249 127 AAKVGGDPEARALAEETIDLLERRFWEDHPGAF 159 (384)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHhccCCCccc
Confidence 5432 1244677888999988875 456653
No 74
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]
Probab=94.70 E-value=0.29 Score=42.77 Aligned_cols=94 Identities=20% Similarity=0.121 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHhhCCC-c-chHHHHHHHHHHHHHHHHhcccCCCCcccccc--cc----hhhhHHHHHHHHH---cccc
Q 026485 42 TASALKAMTLFKKLYPK-H-RTKEVKNFIAKATKFIEDIQKSDGSWYGSWGI--CF----TYAAWFAISGLVA---AKKT 110 (238)
Q Consensus 42 Ta~~l~aL~~~~~~~~~-~-~~~~~~~~i~~a~~~L~~~Q~~dG~w~~~~~~--~~----~~~T~~al~aL~~---~g~~ 110 (238)
.+++.++|..+-...|. + ..-++.++++..++=|+++|.++|-|...-+. .. +.+||..+.||+. .|..
T Consensus 206 ~gW~~mal~d~le~lp~~~~~r~~l~~~l~d~v~al~r~Qde~GlW~tiLDd~~~~sy~EsSaSa~faYallkgi~~G~l 285 (357)
T COG4225 206 NGWYAMALADLLELLPEDHPDRRELLNVLRDLVDALIRYQDESGLWHTILDDGRPGSYLESSASAGFAYALLKGINLGIL 285 (357)
T ss_pred cchHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHhhccccchhhhhccCCCCCchhhhHHHHHHHHHHHHHhcCCC
Confidence 34455555554333333 2 22346689999999999999999999642221 11 2356666677765 5543
Q ss_pred C-ccHHHHHHHHHHHHhccccCCCCC
Q 026485 111 Y-SNCLAIRKATDFLLKIQCEDGGWG 135 (238)
Q Consensus 111 ~-~~~~~i~~a~~~L~~~Q~~dGgw~ 135 (238)
. +..+.++||++-|+++-.++|--+
T Consensus 286 ~~~~~~~~~kA~~aLl~~i~~~g~~g 311 (357)
T COG4225 286 DPEYAPVAEKALDALLGHIDEEGEVG 311 (357)
T ss_pred CchhhHHHHHHHHHHHhhcccccccc
Confidence 2 345789999999999988877533
No 75
>TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase. Glucan 1,4-alpha-glucosidase catalyzes the hydrolysis of terminal 1,4-linked alpha-D-glucose residues from non-reducing ends of polysaccharides, releasing a beta-D-glucose monomer. Some forms of this enzyme can hydrolyze terminal 1,6- and 1,3-alpha-D-glucosidic bonds in polysaccharides as well.
Probab=92.63 E-value=1.3 Score=42.63 Aligned_cols=78 Identities=13% Similarity=0.132 Sum_probs=53.5
Q ss_pred chHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHhcccCCCCccc--------ccccchhhhHHHHHHHHHcccc-
Q 026485 40 ECTASALKAMTLFKKLYPKHRTKEVKNFIAKATKFIEDIQKSDGSWYGS--------WGICFTYAAWFAISGLVAAKKT- 110 (238)
Q Consensus 40 d~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~~dG~w~~~--------~~~~~~~~T~~al~aL~~~g~~- 110 (238)
-..++++.||..+|.. +..++.++||.+.|.++|.|.-. |..-..-.|++.|.++..+.+.
T Consensus 298 RD~a~~a~AL~~~G~~----------~~a~~~~~~l~~~~~~~G~~lq~y~vdG~~~~~~iQlD~~g~~i~~~~~l~~~~ 367 (648)
T TIGR01535 298 RDLYQVANAFLAAGDV----------DSALRSLDYLAKVQQDNGMFPQNSWVDGKPYWTGIQLDETAFPILLAYRLHRYD 367 (648)
T ss_pred hhHHHHHHHHHHCCCH----------HHHHHHHHHHHHHhccCCCcCceeccCCCCCCCCccccHHHHHHHHHHHHHHcC
Confidence 4588899999988742 56889999999999999998532 2111122466666655433221
Q ss_pred -CccHHHHHHHHHHHHhc
Q 026485 111 -YSNCLAIRKATDFLLKI 127 (238)
Q Consensus 111 -~~~~~~i~~a~~~L~~~ 127 (238)
....+.++++++||++.
T Consensus 368 ~~~~~~~vk~aadfl~~~ 385 (648)
T TIGR01535 368 HAFYDKMLKPAADFIVKN 385 (648)
T ss_pred cHHHHHHHHHHHHHHHHc
Confidence 11346799999999996
No 76
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=92.17 E-value=1.5 Score=38.85 Aligned_cols=127 Identities=14% Similarity=0.143 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHh--cccCCCCcccc--------cccchhhhHHHHHHHHHccc---cCccHHHHHHHHHHHHhccc-cC
Q 026485 66 NFIAKATKFIEDI--QKSDGSWYGSW--------GICFTYAAWFAISGLVAAKK---TYSNCLAIRKATDFLLKIQC-ED 131 (238)
Q Consensus 66 ~~i~~a~~~L~~~--Q~~dG~w~~~~--------~~~~~~~T~~al~aL~~~g~---~~~~~~~i~~a~~~L~~~Q~-~d 131 (238)
..++.++.|.... ..+.|+|.... ....++.+++.|.+|+.+.. .....+.++++++||.+.-. ++
T Consensus 14 ~~~~~~~~fw~~~~~d~~~gg~~~~l~~~g~~~~~~k~~~~~ar~i~~~a~a~~~~~~~~~l~~A~~~~~fl~~~~~d~~ 93 (384)
T cd00249 14 WLLEDLLPFWLEAGLDREAGGFFECLDRDGQPFDTDRRLWLQARQVYCFAVAYLLGWRPEWLEAAEHGLEYLDRHGRDPD 93 (384)
T ss_pred HHHHHHHHHHHhcCCCCCCCCeEEEECCCCCCCCCCCeEEEecHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhCcCCC
Confidence 3568889898874 34568885311 12346678899999886543 22245678899999999655 35
Q ss_pred -CCCCCCCCCCCCCcccCCCCCCCCHHHHHHHHHHHHHhCCCCCCh---HHHHHHHHHHHhccc-CCCCCC
Q 026485 132 -GGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMERDP---TPLHRAAKLLINSQL-EDGDFP 197 (238)
Q Consensus 132 -Ggw~~~~~~~~~~~y~~~~~~~~~~~~Ta~al~aL~~~g~~~~~~---~~v~~a~~~L~~~Q~-~dGgw~ 197 (238)
|+|........ .+ .....+.+.-+++|.||..+.....++ +.+++.+++|.+... ++|++-
T Consensus 94 ~Gg~~~~~~~~g----~~-~~~~~~l~~~a~~l~ala~~~~at~d~~~l~~A~~~~~~l~~~~~~~~g~~~ 159 (384)
T cd00249 94 HGGWYFALDQDG----RP-VDATKDLYSHAFALLAAAQAAKVGGDPEARALAEETIDLLERRFWEDHPGAF 159 (384)
T ss_pred CCCEEEEEcCCC----CC-cccccchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccCCCccc
Confidence 88865422110 01 011235778888888888765443333 356667888888775 456653
No 77
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=91.03 E-value=1.1 Score=41.96 Aligned_cols=81 Identities=16% Similarity=0.114 Sum_probs=54.8
Q ss_pred hHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHhcccCCCCcc-----------cccc--cchhhhHHHHHHHHHc
Q 026485 41 CTASALKAMTLFKKLYPKHRTKEVKNFIAKATKFIEDIQKSDGSWYG-----------SWGI--CFTYAAWFAISGLVAA 107 (238)
Q Consensus 41 ~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~~dG~w~~-----------~~~~--~~~~~T~~al~aL~~~ 107 (238)
..++-|.+++.+... ..++++++.+++.|+.|.++|++||.+.. .|.+ ...|+....+.+|...
T Consensus 61 ~~g~wl~a~a~~~~~---~~D~~l~~~~d~~V~~l~~~Q~~dGYl~~~~~~~~~~~~~~w~~~~he~Y~~~~ll~gl~~~ 137 (520)
T PF07944_consen 61 DVGKWLEAAAYAYAY---TGDPELKAKADEIVDELAAAQQPDGYLGTYPEERNFNPDDRWAPDMHELYCLGKLLEGLIDY 137 (520)
T ss_pred cHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHHhccCCceecccccccccccccCCCCCccceehHhHHHHHHHHH
Confidence 377888888876543 33566889999999999999999996632 2322 1145556677777654
Q ss_pred cccC---ccHHHHHHHHHHH
Q 026485 108 KKTY---SNCLAIRKATDFL 124 (238)
Q Consensus 108 g~~~---~~~~~i~~a~~~L 124 (238)
-... ..-+++.|..+|+
T Consensus 138 y~~tG~~~~L~v~~k~ad~~ 157 (520)
T PF07944_consen 138 YEATGNERALDVATKLADWV 157 (520)
T ss_pred HHHHCcHHHHHHHHHHHHHH
Confidence 3211 1346677889999
No 78
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]
Probab=88.97 E-value=16 Score=32.28 Aligned_cols=76 Identities=20% Similarity=0.248 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHhccccCCCCCCCCCCCCCCcccCCCCCCCCHHHHHHHHHHHHH---hCCCC-CChHHHHHHHHHHHhc
Q 026485 114 CLAIRKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIH---AGQME-RDPTPLHRAAKLLINS 189 (238)
Q Consensus 114 ~~~i~~a~~~L~~~Q~~dGgw~~~~~~~~~~~y~~~~~~~~~~~~Ta~al~aL~~---~g~~~-~~~~~v~~a~~~L~~~ 189 (238)
...++.-++-|++.|.++|-|--.-... . ++.-...+.||-...||+. .|... .....++||.+=|+++
T Consensus 231 ~~~l~d~v~al~r~Qde~GlW~tiLDd~-----~--~~sy~EsSaSa~faYallkgi~~G~l~~~~~~~~~kA~~aLl~~ 303 (357)
T COG4225 231 LNVLRDLVDALIRYQDESGLWHTILDDG-----R--PGSYLESSASAGFAYALLKGINLGILDPEYAPVAEKALDALLGH 303 (357)
T ss_pred HHHHHHHHHHHHHhhccccchhhhhccC-----C--CCCchhhhHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhh
Confidence 3556777889999999999996432110 0 1222334555555556655 34332 1124899999999999
Q ss_pred ccCCCCC
Q 026485 190 QLEDGDF 196 (238)
Q Consensus 190 Q~~dGgw 196 (238)
..++|--
T Consensus 304 i~~~g~~ 310 (357)
T COG4225 304 IDEEGEV 310 (357)
T ss_pred ccccccc
Confidence 8887643
No 79
>TIGR01577 oligosac_amyl oligosaccharide amylase. The name of this type of amylase is based on the characterization of an glucoamylase family enzyme from Thermoactinomyces vulgaris. The T. vulgaris enzyme was expressed in E. coli and, like other glucoamylases, it releases beta-D-glucose from starch. However, unlike previously characterized glucoamylases, this T. vulgaris amylase hydrolyzes maltooligosaccharides (maltotetraose, maltose) more efficiently than starch (PubMed: 11549021), indicating this enzyme belongs to a class of glucoamylase-type enzymes with oligosaccharide-metabolizing activity.
Probab=88.61 E-value=23 Score=33.86 Aligned_cols=93 Identities=17% Similarity=0.249 Sum_probs=58.1
Q ss_pred HHHHH-HccccCccHHHHHHHHHHHHhcccc--CCCCCCCCCCCCCCcccCCCCCCCCHHHHHHHHHHHHHhCCCCCCh-
Q 026485 101 ISGLV-AAKKTYSNCLAIRKATDFLLKIQCE--DGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMERDP- 176 (238)
Q Consensus 101 l~aL~-~~g~~~~~~~~i~~a~~~L~~~Q~~--dGgw~~~~~~~~~~~y~~~~~~~~~~~~Ta~al~aL~~~g~~~~~~- 176 (238)
+.+|. ..|.....++.+.+.++-|.+.-.. +|||..-.. ..|. ++.+.+..|.|...++...+......
T Consensus 482 lL~l~~~~g~l~~~Dpr~v~Tv~~I~~~L~~~~~ggi~RY~~----D~y~---~g~~w~i~T~wla~~~~~~g~~~~~~~ 554 (616)
T TIGR01577 482 ILGISVPFNLIAPDDERMVKMAEAIEKHLTSPIVGGIKRYEN----DPYV---GGNPWILTTLWLSQLYIKQGRILKALN 554 (616)
T ss_pred HHhHHHhcCCCCCCChHHHHHHHHHHHHhcccCCCeeeCCCC----CCCC---CCCcHHHHHHHHHHHHHHhcccccccc
Confidence 44453 3665444567777777777654332 566643211 1122 24677889999999998887654210
Q ss_pred --------HHHHHHHHHHHhcccCCCCCCCCc
Q 026485 177 --------TPLHRAAKLLINSQLEDGDFPQQE 200 (238)
Q Consensus 177 --------~~v~~a~~~L~~~Q~~dGgw~~~~ 200 (238)
+...+-++|++++.++.|-++++.
T Consensus 555 ~~~~~~~~~~A~~ll~~~~~~~~~~Gll~Eqv 586 (616)
T TIGR01577 555 HNGADIYLQKSKKLLKWVMDHRTDLGLLPEQV 586 (616)
T ss_pred cchhhhHHHHHHHHHHHHHhcCCCCCCCcccc
Confidence 134456889999999999999765
No 80
>COG2373 Large extracellular alpha-helical protein [General function prediction only]
Probab=87.55 E-value=4.8 Score=42.72 Aligned_cols=92 Identities=22% Similarity=0.270 Sum_probs=62.4
Q ss_pred CCCcchHHHHHHHHHHHHhhCCCc--chHHHHHHHHHHHHHHHHhcccCCCCcccccc---cchhhhHHHHHHHHHcccc
Q 026485 36 YDKVECTASALKAMTLFKKLYPKH--RTKEVKNFIAKATKFIEDIQKSDGSWYGSWGI---CFTYAAWFAISGLVAAKKT 110 (238)
Q Consensus 36 ~~~~d~Ta~~l~aL~~~~~~~~~~--~~~~~~~~i~~a~~~L~~~Q~~dG~w~~~~~~---~~~~~T~~al~aL~~~g~~ 110 (238)
+.+.+-|+..+..|..+.+..... ........++.++.-|.+.|..+|+| +-|++ ...+.|++++..|.++...
T Consensus 1167 ygc~EQt~S~~~pll~~~~~~~~~~~~~~~~~~~l~~a~~rL~~~Q~~~G~F-~~W~~~~~~d~~ltaYa~~Fl~~A~e~ 1245 (1621)
T COG2373 1167 YGCAEQTASRLLPLLYAQKATADPGAADNDLRARLQDAIGRLLSLQGSNGAF-GLWGGNGSGDPWLTAYAVDFLLRAREQ 1245 (1621)
T ss_pred ccchhhhhhhHHHHHhhhhhhccccccchhHHHHHHHHHHHHHhhhhcCCce-eecCCCCCcchhhhHHHHHHHhhhhhc
Confidence 344565666666666655442222 23345678999999999999999999 55654 4567899999999887442
Q ss_pred C--ccHHHHHHHHHHHHhcc
Q 026485 111 Y--SNCLAIRKATDFLLKIQ 128 (238)
Q Consensus 111 ~--~~~~~i~~a~~~L~~~Q 128 (238)
. .....++++.+++++.-
T Consensus 1246 g~~vp~~~~~~~~~~~~~~l 1265 (1621)
T COG2373 1246 GYSVPSDALNQMLERLLEYL 1265 (1621)
T ss_pred CcCCCHHHHHHHHHHHHHHH
Confidence 1 13577888877666543
No 81
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs.
Probab=84.58 E-value=10 Score=33.17 Aligned_cols=79 Identities=15% Similarity=0.075 Sum_probs=44.1
Q ss_pred HHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHhcccCCCCcccccc--c-----chhhhHHHHHHHHHcccc---CccH
Q 026485 45 ALKAMTLFKKLYPKHRTKEVKNFIAKATKFIEDIQKSDGSWYGSWGI--C-----FTYAAWFAISGLVAAKKT---YSNC 114 (238)
Q Consensus 45 ~l~aL~~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~~dG~w~~~~~~--~-----~~~~T~~al~aL~~~g~~---~~~~ 114 (238)
++.+|..+... ...+++.+.+.++++|+.+.+.++|.|+..... . .-+++.=++.+|..+.+. ....
T Consensus 170 I~~~L~~~~~~---~~~~~~~~~i~~~i~~~~~~~~~~g~w~~~~~~~~~~~~~~wChG~~Gi~~~l~~~~~~~~~~~~~ 246 (343)
T cd04794 170 ILYILLQTPLF---LLKPSLAPLIKRSLDYLLSLQFPSGNFPSSLGNRKRDRLVQWCHGAPGIVYLLAKAYLVFKEEQYL 246 (343)
T ss_pred HHHHHHhhhhh---cCCccHHHHHHHHHHHHHHhhccCCCCCCccCCCCCCccccccCCCchHHHHHHHHHHHhCCHHHH
Confidence 44455554432 123456789999999999999999999643221 0 111222234444433321 1245
Q ss_pred HHHHHHHHHHHh
Q 026485 115 LAIRKATDFLLK 126 (238)
Q Consensus 115 ~~i~~a~~~L~~ 126 (238)
+.++++.+.+.+
T Consensus 247 ~~~~~~~~~~~~ 258 (343)
T cd04794 247 EAAIKCGELIWK 258 (343)
T ss_pred HHHHHHHHHHHH
Confidence 666777766544
No 82
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=81.84 E-value=13 Score=32.58 Aligned_cols=93 Identities=19% Similarity=0.238 Sum_probs=63.5
Q ss_pred cchHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHhcc--cCCCCcccc-------cccchhhhHHHHHHHHHccc
Q 026485 39 VECTASALKAMTLFKKLYPKHRTKEVKNFIAKATKFIEDIQK--SDGSWYGSW-------GICFTYAAWFAISGLVAAKK 109 (238)
Q Consensus 39 ~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~--~dG~w~~~~-------~~~~~~~T~~al~aL~~~g~ 109 (238)
.-+++..|-+++.+... . .++..+..+++++||.+.-. ++|+|.... .....|..+++++||+.+..
T Consensus 20 ~~~q~R~~~~fa~a~~~-g---~~~~l~~A~~~~~fl~~~~~D~~~Gg~~~~~~~~~~~~~~~~~Y~~af~l~ala~~~~ 95 (346)
T PF07221_consen 20 LWVQARQLYTFARAYRL-G---RPEYLELAEHGFDFLRKHFRDPEYGGWYRSLDDGGPLDPQKDLYDQAFALLALAEARA 95 (346)
T ss_dssp HHHHHHHHHHHHHHHHT-T---SHHHHHHHHHHHHHHHHTTBTTTTSSBSSEEETTEEEE--EEHHHHHHHHHHHHHHHC
T ss_pred eeeeHHHHHHHHHHHhc-C---chhHHHHHHHHHHHHHHhcccCCCCCEEEEeCCCCCCccccchHHHHHHHHHHHHHHH
Confidence 34689999999987752 2 34466889999999998774 558885311 12346788999999988422
Q ss_pred --cCccHHHHHHHHHHHHhcc-ccC-CCCC
Q 026485 110 --TYSNCLAIRKATDFLLKIQ-CED-GGWG 135 (238)
Q Consensus 110 --~~~~~~~i~~a~~~L~~~Q-~~d-Ggw~ 135 (238)
.....+.+++++++|.+.- .++ |++.
T Consensus 96 tg~~~~~~~A~~~~~~l~~~~~d~~~g~~~ 125 (346)
T PF07221_consen 96 TGDPEALELAEQTLEFLERRFWDPEGGGYR 125 (346)
T ss_dssp TT-TTHHHHHHHHHHHHHHHTEETTTTEE-
T ss_pred hCChhHHHHHHHHHHHHHHHhcccccCcce
Confidence 1235577889999998885 444 4444
No 83
>COG2373 Large extracellular alpha-helical protein [General function prediction only]
Probab=81.57 E-value=7.8 Score=41.21 Aligned_cols=66 Identities=20% Similarity=0.213 Sum_probs=50.0
Q ss_pred cHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcccCCCCCCCCHHHHHHHHHHHHHhCCCC--CChHHHHHHHHHHHhc
Q 026485 113 NCLAIRKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQME--RDPTPLHRAAKLLINS 189 (238)
Q Consensus 113 ~~~~i~~a~~~L~~~Q~~dGgw~~~~~~~~~~~y~~~~~~~~~~~~Ta~al~aL~~~g~~~--~~~~~v~~a~~~L~~~ 189 (238)
.+..++.++.-|++.|..+|+|+. ++ +.+.+++..|+|+...|..+.... .....++++.+++++.
T Consensus 1197 ~~~~l~~a~~rL~~~Q~~~G~F~~----------W~-~~~~~d~~ltaYa~~Fl~~A~e~g~~vp~~~~~~~~~~~~~~ 1264 (1621)
T COG2373 1197 LRARLQDAIGRLLSLQGSNGAFGL----------WG-GNGSGDPWLTAYAVDFLLRAREQGYSVPSDALNQMLERLLEY 1264 (1621)
T ss_pred HHHHHHHHHHHHHhhhhcCCceee----------cC-CCCCcchhhhHHHHHHHhhhhhcCcCCCHHHHHHHHHHHHHH
Confidence 346889999999999999999874 22 125678999999999999884432 2346899987766653
No 84
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=77.08 E-value=22 Score=33.25 Aligned_cols=71 Identities=17% Similarity=0.125 Sum_probs=40.7
Q ss_pred cHHHHHHHHHHHHhccccCCCCCCCCCCC---CCCcccCCCCCCCCHHHHHHHHHHHHHhCCCCCC---hHHHHHHHHHH
Q 026485 113 NCLAIRKATDFLLKIQCEDGGWGESYRSC---PNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMERD---PTPLHRAAKLL 186 (238)
Q Consensus 113 ~~~~i~~a~~~L~~~Q~~dGgw~~~~~~~---~~~~y~~~~~~~~~~~~Ta~al~aL~~~g~~~~~---~~~v~~a~~~L 186 (238)
....+++.++.|+++|.+||-.+...... ....|.+ .....+...-.+.+|........+ -+.+.|..+|+
T Consensus 81 l~~~~d~~V~~l~~~Q~~dGYl~~~~~~~~~~~~~~w~~---~~he~Y~~~~ll~gl~~~y~~tG~~~~L~v~~k~ad~~ 157 (520)
T PF07944_consen 81 LKAKADEIVDELAAAQQPDGYLGTYPEERNFNPDDRWAP---DMHELYCLGKLLEGLIDYYEATGNERALDVATKLADWV 157 (520)
T ss_pred HHHHHHHHHHHHHHhccCCceecccccccccccccCCCC---CccceehHhHHHHHHHHHHHHHCcHHHHHHHHHHHHHH
Confidence 56778899999999999999665443222 1112321 112244455555666543222111 24677888899
No 85
>PF10022 DUF2264: Uncharacterized protein conserved in bacteria (DUF2264); InterPro: IPR016624 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=68.85 E-value=87 Score=28.00 Aligned_cols=170 Identities=15% Similarity=0.146 Sum_probs=0.0
Q ss_pred cccCCCcchHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHhcccCCCCcccccccchhhhHHHHHHHHHccccCc
Q 026485 33 IIEYDKVECTASALKAMTLFKKLYPKHRTKEVKNFIAKATKFIEDIQKSDGSWYGSWGICFTYAAWFAISGLVAAKKTYS 112 (238)
Q Consensus 33 ~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~~dG~w~~~~~~~~~~~T~~al~aL~~~g~~~~ 112 (238)
..+..-|+..+.++.-+..=...=..+. ++..++-++||.+.....-.. ++-..-..++..+|...|...
T Consensus 103 ~~dQ~~VEaa~la~aL~~a~~~lW~~L~----~~~k~~l~~wL~~~~~~~~~~-----nNW~lF~v~v~~~L~~~G~~~- 172 (361)
T PF10022_consen 103 DYDQRLVEAASLALALLRAPEWLWDPLD----EEEKENLVDWLKQIRGIKPPD-----NNWLLFRVMVEAFLKKVGEEY- 172 (361)
T ss_pred cchhhHhHHHHHHHHHHHCHHHHHhhCC----HHHHHHHHHHHHhcCcCCCcc-----chhHHHHHHHHHHHHHcCCCC-
Q ss_pred cHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcccCCCCCCCCHHHHHHHHHHHHHh-------CCCCCChHHHHHHHHH
Q 026485 113 NCLAIRKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHA-------GQMERDPTPLHRAAKL 185 (238)
Q Consensus 113 ~~~~i~~a~~~L~~~Q~~dGgw~~~~~~~~~~~y~~~~~~~~~~~~Ta~al~aL~~~-------g~~~~~~~~v~~a~~~ 185 (238)
+...++.+++-+.+....||=+.+. +..+-|-|. +||+.-.... ...+.-....+|+.+|
T Consensus 173 d~~~i~~~l~~~e~~Y~GdGWY~DG------------~~~~~DYYn-s~aih~y~l~~~~~~~~~~~~~~~~~~~Ra~~f 239 (361)
T PF10022_consen 173 DEERIDYDLERIEEWYLGDGWYSDG------------PEFQFDYYN-SWAIHPYLLLYARLMGDEDPERAARYRQRAQRF 239 (361)
T ss_pred cHHHHHHHHHHHHHHhccCCccccC------------CccCCcchH-HHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHH
Q ss_pred HHhccc---CCCCCCCCccccccCCccccccCCchhhHHHHHHHHHHHhccCC
Q 026485 186 LINSQL---EDGDFPQQELTGVFMENCMLHYPIYRNIFPMWALAEYRSRLLLP 235 (238)
Q Consensus 186 L~~~Q~---~dGgw~~~~~~~~~~~~~~~~~~~~~~~~~l~aL~~~~~~~~~~ 235 (238)
+....+ +||...- |.+...|++.. ++.++...+...++.+
T Consensus 240 a~~~~~~f~~dG~~~~------~GRSltYRfA~----~a~~~~~a~~~~lp~~ 282 (361)
T PF10022_consen 240 AEDYERMFSPDGAAPP------FGRSLTYRFAA----FAFLAAAALAGVLPEP 282 (361)
T ss_pred HHHHHHHcCCCCCcCC------ccccHHHHHHH----HHHHHHHHHcCCCCcc
No 86
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=68.51 E-value=1.2e+02 Score=29.44 Aligned_cols=40 Identities=18% Similarity=0.163 Sum_probs=31.1
Q ss_pred chHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHhcccC
Q 026485 40 ECTASALKAMTLFKKLYPKHRTKEVKNFIAKATKFIEDIQKSD 82 (238)
Q Consensus 40 d~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~~d 82 (238)
+-.+..|.+|+..++.. ..++.-+..+++.+||.+....|
T Consensus 411 ~wNglmi~aLa~a~~~~---~d~~~l~~A~~~~~fi~~~l~~~ 450 (667)
T COG1331 411 DWNGLMIAALAEAGRVL---GDPEYLEAAERAADFILDNLYVD 450 (667)
T ss_pred ccHHHHHHHHHHHHHHc---CChHHHHHHHHHHHHHHHhhccc
Confidence 44788999999988752 33445578999999999988777
No 87
>KOG3760 consensus Heparan sulfate-glucuronic acid C5-epimerase [Carbohydrate transport and metabolism]
Probab=67.73 E-value=3.9 Score=36.68 Aligned_cols=23 Identities=39% Similarity=0.674 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHhccccCCCCCCC
Q 026485 115 LAIRKATDFLLKIQCEDGGWGES 137 (238)
Q Consensus 115 ~~i~~a~~~L~~~Q~~dGgw~~~ 137 (238)
.+.-.|.+||++.|++-|||..-
T Consensus 380 aaFyaAadWlV~NQd~kGGW~~p 402 (594)
T KOG3760|consen 380 AAFYAAADWLVKNQDDKGGWSVP 402 (594)
T ss_pred HHHHHHHHHHhhCCCCCCCCcch
Confidence 44567899999999999999743
No 88
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=67.33 E-value=20 Score=31.37 Aligned_cols=98 Identities=17% Similarity=0.194 Sum_probs=57.4
Q ss_pred hhhhHHHHHHHH---HccccCccHHHHHHHHHHHHhccc--cCCCCCCCCCCCCCCcccCCCCCCCCHHHHHHHHHHHHH
Q 026485 94 TYAAWFAISGLV---AAKKTYSNCLAIRKATDFLLKIQC--EDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIH 168 (238)
Q Consensus 94 ~~~T~~al~aL~---~~g~~~~~~~~i~~a~~~L~~~Q~--~dGgw~~~~~~~~~~~y~~~~~~~~~~~~Ta~al~aL~~ 168 (238)
+..++..|-+++ .+|.+. ..+.++++++||.+.-. ++|+|....... . + .....+.+..+++|+||..
T Consensus 20 ~~~q~R~~~~fa~a~~~g~~~-~l~~A~~~~~fl~~~~~D~~~Gg~~~~~~~~--~---~-~~~~~~~Y~~af~l~ala~ 92 (346)
T PF07221_consen 20 LWVQARQLYTFARAYRLGRPE-YLELAEHGFDFLRKHFRDPEYGGWYRSLDDG--G---P-LDPQKDLYDQAFALLALAE 92 (346)
T ss_dssp HHHHHHHHHHHHHHHHTTSHH-HHHHHHHHHHHHHHTTBTTTTSSBSSEEETT--E---E-EE--EEHHHHHHHHHHHHH
T ss_pred eeeeHHHHHHHHHHHhcCchh-HHHHHHHHHHHHHHhcccCCCCCEEEEeCCC--C---C-CccccchHHHHHHHHHHHH
Confidence 334455444444 245332 56788999999999885 558885332110 0 0 0134578999999999988
Q ss_pred hCCCCC--ChHHHHHHHHHHHhcc-cCC-CCCCC
Q 026485 169 AGQMER--DPTPLHRAAKLLINSQ-LED-GDFPQ 198 (238)
Q Consensus 169 ~g~~~~--~~~~v~~a~~~L~~~Q-~~d-Ggw~~ 198 (238)
+..... ..+.+++++++|.+.. .++ |++.+
T Consensus 93 ~~~tg~~~~~~~A~~~~~~l~~~~~d~~~g~~~~ 126 (346)
T PF07221_consen 93 ARATGDPEALELAEQTLEFLERRFWDPEGGGYRE 126 (346)
T ss_dssp HHCTT-TTHHHHHHHHHHHHHHHTEETTTTEE--
T ss_pred HHHhCChhHHHHHHHHHHHHHHHhcccccCccee
Confidence 533221 1246678899998875 454 55443
No 89
>cd04792 LanM-like LanM-like proteins. LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.
Probab=64.90 E-value=1.5e+02 Score=29.34 Aligned_cols=123 Identities=18% Similarity=0.122 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCcccccccchhhhHHHHHHHHHcc---ccCccHHHHHHHHHHHHhccccCCCCCCCCC
Q 026485 63 EVKNFIAKATKFIEDIQKSDGSWYGSWGICFTYAAWFAISGLVAAK---KTYSNCLAIRKATDFLLKIQCEDGGWGESYR 139 (238)
Q Consensus 63 ~~~~~i~~a~~~L~~~Q~~dG~w~~~~~~~~~~~T~~al~aL~~~g---~~~~~~~~i~~a~~~L~~~Q~~dGgw~~~~~ 139 (238)
++.+.+.+.++.+.....++..+ +...+.+=++.+|..+. ......+.+.+.+++|++.+..+..|.....
T Consensus 561 ~~~~~a~~~~~~l~~~~~~~~~~------D~~~G~aGii~~Ll~l~~~~~~~~~l~~a~~~~~~l~~~~~~~~~~~~~~~ 634 (825)
T cd04792 561 RLLNLAKEILDLIDELIEKDEKL------DFISGAAGLILVLLSLYELFLSERFLDLALKCGDHLLENASNEDGGIGPAE 634 (825)
T ss_pred HHHHHHHHHHHHHHHhhccccCC------CEeeecHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhhhhccCCccccc
Confidence 34456667777666544333222 11122232333443332 2222456678889998886655443321100
Q ss_pred CCCCCcccCCCCCCCCHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcccCC-CCCC
Q 026485 140 SCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMERDPTPLHRAAKLLINSQLED-GDFP 197 (238)
Q Consensus 140 ~~~~~~y~~~~~~~~~~~~Ta~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~~d-Ggw~ 197 (238)
......| ..-..+.+++|..+........-.+.+.+++++..+...++ +.|.
T Consensus 635 ~~~~~G~------aHG~sGi~~aL~~l~~~~~d~~~~~~a~~~l~~~~~~~~~~~~~w~ 687 (825)
T cd04792 635 QPNLTGF------AHGASGIAWALLRLYKVTGDSRYLKLAHKALKYERRLFSEEGWNWP 687 (825)
T ss_pred ccccccc------cccHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhcCHhhcCCC
Confidence 0000111 22356777777777665332211235666777766554433 4565
No 90
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs.
Probab=63.72 E-value=1e+02 Score=26.92 Aligned_cols=44 Identities=16% Similarity=0.236 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcccCCCCCCCC
Q 026485 156 LVQTAWAMMSLIHAGQMERDPTPLHRAAKLLINSQLEDGDFPQQ 199 (238)
Q Consensus 156 ~~~Ta~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~~dGgw~~~ 199 (238)
....+++|+.+..........+.++++++|+.+.+.++|.|+..
T Consensus 167 ~aGI~~~L~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~g~w~~~ 210 (343)
T cd04794 167 LAGILYILLQTPLFLLKPSLAPLIKRSLDYLLSLQFPSGNFPSS 210 (343)
T ss_pred HHHHHHHHHhhhhhcCCccHHHHHHHHHHHHHHhhccCCCCCCc
Confidence 44555555555443222222358999999999988888988754
No 91
>PF05147 LANC_like: Lanthionine synthetase C-like protein; InterPro: IPR007822 The LanC-like protein superfamily encompasses a highly divergent group of peptide-modifying enzymes, including the eukaryotic and bacterial lanthionine synthetase C-like proteins (LanC) [, , ]; subtilin biosynthesis protein SpaC from Bacillus subtilis [, ]; epidermin biosynthesis protein EpiC from Staphylococcus epidermidis []; nisin biosynthesis protein NisC from Lactococcus lactis [, , ]; GCR2 from Arabidopsis thaliana []; and many others. The 3D structure of the lantibiotic cyclase from L. lactis has been determined by X-ray crystallography to 2.5A resolution []. The globular structure is characterised by an all-alpha fold, in which an outer ring of helices envelops an inner toroid composed of 7 shorter, hydrophobic helices. This 7-fold hyrophobic periodicity has led several authors to claim various members of the family, including eukaryotic LanC-1 and GCR2, to be novel G protein-coupled receptors [, ]; some of these claims have since been corrected [, , ]. ; PDB: 3E6U_D 3E73_B 2G0D_A 2G02_A.
Probab=62.17 E-value=52 Score=28.37 Aligned_cols=133 Identities=16% Similarity=0.115 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHhccc-CCCCccccccc-----ch--hhhHHHHHHHHHccccC--
Q 026485 42 TASALKAMTLFKKLYPKHRTKEVKNFIAKATKFIEDIQKS-DGSWYGSWGIC-----FT--YAAWFAISGLVAAKKTY-- 111 (238)
Q Consensus 42 Ta~~l~aL~~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~~-dG~w~~~~~~~-----~~--~~T~~al~aL~~~g~~~-- 111 (238)
.+-++.+|..+... ....++..+.+++.++|+.+.... +|.|+...... .. +++.=++.++..+....
T Consensus 169 ~~Gi~~~L~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WC~G~~Gi~~~~~~~~~~~~~ 246 (355)
T PF05147_consen 169 IAGILYALLRLYKK--GTKDPEYLKLIEQILNFLLKHFNTDDGGWPDNRNNSNYKSRPSWCYGSPGILLALLKAYKILDD 246 (355)
T ss_dssp HHHHHHHHCHCCHH--T--HHHHHHCHHHHHHHHHHC--TGCCT--SECTHHHHHC--SSSSSHHHHHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHhhhc--ccCchhHHHHHHHHHHHHHHhcCcccCCCCCCCCccccccccccccCcHHHHHHHHHHHHhhch
Confidence 44466666665421 223455678999999999998754 67786422211 11 23333444444333322
Q ss_pred -ccHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcccCCCCCCCCHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcc
Q 026485 112 -SNCLAIRKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMERDPTPLHRAAKLLINSQ 190 (238)
Q Consensus 112 -~~~~~i~~a~~~L~~~Q~~dGgw~~~~~~~~~~~y~~~~~~~~~~~~Ta~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q 190 (238)
...+.+.++++-+.+.+. ....+..|++ .......+.-+...-..+.-.+.+++.++.+++.-
T Consensus 247 ~~~~~~~~~~~~~~~~~~~----~~~~~~lCHG------------~aG~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (355)
T PF05147_consen 247 EEYDEEAEQALESILQKGL----FLNNPSLCHG------------TAGILEILLDLYKYTGDEEYKELANKLIQKLLSYY 310 (355)
T ss_dssp HHHHHHHHHHHHHHHHH-T----CTTSS-STTS------------HHHHHHHHHHHHHHH--HCCHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHHHccc----cCCCCceeCc------------hHHhHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 123444445555544221 3333333422 34555555555543222222335666666666544
Q ss_pred cC
Q 026485 191 LE 192 (238)
Q Consensus 191 ~~ 192 (238)
.+
T Consensus 311 ~~ 312 (355)
T PF05147_consen 311 DE 312 (355)
T ss_dssp CC
T ss_pred hc
Confidence 43
No 92
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases. Some members of this subgroup lack the zinc binding site and the active site residues, and therefore are most likely inactive. The function of this domain is unknown.
Probab=58.68 E-value=1.2e+02 Score=25.94 Aligned_cols=74 Identities=15% Similarity=0.006 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHHHHHHHhcccCCCCcccc------cccchhhhHHHHHHHHHccc---cCccHHHHHHHHHHHHhcccc-
Q 026485 61 TKEVKNFIAKATKFIEDIQKSDGSWYGSW------GICFTYAAWFAISGLVAAKK---TYSNCLAIRKATDFLLKIQCE- 130 (238)
Q Consensus 61 ~~~~~~~i~~a~~~L~~~Q~~dG~w~~~~------~~~~~~~T~~al~aL~~~g~---~~~~~~~i~~a~~~L~~~Q~~- 130 (238)
++++.+.+.+++++|.....++..+. .| ..+..++.+-++.+|..+.+ .....+.+.+++++++++..+
T Consensus 100 ~~~~l~~a~~~~~~l~~~~~~~~~~~-~~~~~~~~~~G~~hG~aGi~~~L~~l~~~t~d~~~l~~A~~~~~~~~~~~~~~ 178 (321)
T cd04791 100 DPALLEAAAKIAELLAEALERGDPAL-LWPDFDRVDHGLLHGWAGIALFLLRLYKATGDSRYLELAEEALDKELARAVVD 178 (321)
T ss_pred ChHHHHHHHHHHHHHHHHhhcccccc-ccccCCCCCCccccCcHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhccC
Confidence 34566788899999987654433321 22 11223344445555554433 222456677888888776543
Q ss_pred CCCCC
Q 026485 131 DGGWG 135 (238)
Q Consensus 131 dGgw~ 135 (238)
+++|.
T Consensus 179 ~~g~~ 183 (321)
T cd04791 179 DGGLL 183 (321)
T ss_pred CCCce
Confidence 46664
No 93
>COG2942 N-acyl-D-glucosamine 2-epimerase [Carbohydrate transport and metabolism]
Probab=54.88 E-value=62 Score=29.12 Aligned_cols=99 Identities=17% Similarity=0.166 Sum_probs=57.5
Q ss_pred hhHHHHHHHHHc---cccCccHHHHHHHHHHHHh-ccccCCCCCCCCCCCCCCcccCCCCCCCCHHHHHHHHHHHHHhCC
Q 026485 96 AAWFAISGLVAA---KKTYSNCLAIRKATDFLLK-IQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQ 171 (238)
Q Consensus 96 ~T~~al~aL~~~---g~~~~~~~~i~~a~~~L~~-~Q~~dGgw~~~~~~~~~~~y~~~~~~~~~~~~Ta~al~aL~~~g~ 171 (238)
.++.-|-+++.+ +...+...++..+++|+.+ ...++|+|..-.... .+ + -...-+.|..+++|+|+..+-.
T Consensus 56 ~~~Rqvy~fA~A~~~g~~~~~~~~v~hG~~y~~~~~R~~~gg~~~~~~~d-g~---~-~Dat~d~Y~haFallA~A~~a~ 130 (388)
T COG2942 56 VQARQVYCFAVAGLLGWRGPWLDAVAHGIAYLARVGRDPEGGWYFALDND-GG---P-VDATKDLYGHAFALLAAAHAAT 130 (388)
T ss_pred eehhHHHHHHHHHHhcCCccHHHHHHhHHHHHHhcCcCCCCCeEEEecCC-CC---c-ccccHhHHHHHHHHHHHHHHHh
Confidence 344444444433 3222367889999999985 466889986432111 00 0 0113468999999999987644
Q ss_pred CCCC--hHHHHHHHHHHHhcc----cCCCCCCCC
Q 026485 172 MERD--PTPLHRAAKLLINSQ----LEDGDFPQQ 199 (238)
Q Consensus 172 ~~~~--~~~v~~a~~~L~~~Q----~~dGgw~~~ 199 (238)
...+ .+.++.+.+.|.+.. ++-+++..+
T Consensus 131 a~~~~a~~~~~~a~~~l~~~~~~~~~pl~~~e~~ 164 (388)
T COG2942 131 AGPPRADELLDEALDVLERRFWREEHPLGGFEED 164 (388)
T ss_pred cCChhHHHHHHHHHHHHHHHHhhhcCCccccccc
Confidence 3322 146666776665443 455666654
No 94
>COG3533 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.36 E-value=1.6e+02 Score=27.68 Aligned_cols=69 Identities=23% Similarity=0.245 Sum_probs=45.9
Q ss_pred chHHHHHHHHHHHHHHHHhcccCCCCcc---------cccc----cchhhhHHHHHHHHH----ccccCccHHHHHHHHH
Q 026485 60 RTKEVKNFIAKATKFIEDIQKSDGSWYG---------SWGI----CFTYAAWFAISGLVA----AKKTYSNCLAIRKATD 122 (238)
Q Consensus 60 ~~~~~~~~i~~a~~~L~~~Q~~dG~w~~---------~~~~----~~~~~T~~al~aL~~----~g~~~~~~~~i~~a~~ 122 (238)
+++++++.+++.|+-+.+.|.+||.-.+ +|++ ...|+.+..+.++.+ .|+.. .-+++.|-.+
T Consensus 83 ~dp~Lekr~D~vi~~~a~~QdedGYl~~~~q~~~pe~Rw~nlr~~HelY~aghLieg~va~~qaTGkr~-lldV~~rlAD 161 (589)
T COG3533 83 GDPELEKRIDEVVEELARAQDEDGYLGGWFQADFPEERWGNLRPNHELYCAGHLIEGGVAAHQATGKRR-LLDVVCRLAD 161 (589)
T ss_pred CCHHHHHHHHHHHHHHHHhhccCCcccceeeccCchhhhhccccchHHHHhHHHHhhhhHHHHhhCcch-HHHHHHHHHH
Confidence 3456889999999999999999976532 3432 234555555555443 34442 3467888899
Q ss_pred HHHhccc
Q 026485 123 FLLKIQC 129 (238)
Q Consensus 123 ~L~~~Q~ 129 (238)
||.+.--
T Consensus 162 hi~tvfg 168 (589)
T COG3533 162 HIATVFG 168 (589)
T ss_pred hhhhhcC
Confidence 9988643
No 95
>COG3387 SGA1 Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=50.82 E-value=1.6e+02 Score=28.33 Aligned_cols=97 Identities=16% Similarity=0.175 Sum_probs=64.7
Q ss_pred HHHHHHHccccCccHHHHHHHHHHHHhccccCC-CCCCCCCCCCCCcccCCCCCCCCHHHHHHHHHHHHHhCCCCCChHH
Q 026485 100 AISGLVAAKKTYSNCLAIRKATDFLLKIQCEDG-GWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMERDPTP 178 (238)
Q Consensus 100 al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~dG-gw~~~~~~~~~~~y~~~~~~~~~~~~Ta~al~aL~~~g~~~~~~~~ 178 (238)
++.+|...|.....++.+.+.++-|.+.-..+| +|..-...+ ...+. ..+.+.+..|.|-...+...++.. .
T Consensus 483 sll~l~~fg~i~~~D~~~~~t~~~I~~~L~~~~~gi~RY~~~~-~d~~~--~~~~~w~i~t~Wl~~~~~~~g~~~----~ 555 (612)
T COG3387 483 SLLGLVLFGFIPPDDPRILATVEAIERELLVDGGGIRRYNNEY-DDGLG--GDNGPWIITTLWLSEYYLALGRLD----E 555 (612)
T ss_pred HHhhccccCccCCCCHHHHHHHHHHHHHHhhcCCcEEcCcccc-ccccC--CCCCcceeehhHHHHHHHHccchH----H
Confidence 455565667655567778888888888877777 554321100 11111 122366778888888888887753 5
Q ss_pred HHHHHHHHHhcccCCCCCCCCcccc
Q 026485 179 LHRAAKLLINSQLEDGDFPQQELTG 203 (238)
Q Consensus 179 v~~a~~~L~~~Q~~dGgw~~~~~~~ 203 (238)
+++.++||++.++++|-.+++...+
T Consensus 556 a~~ll~~l~~~a~~~gll~EQv~~~ 580 (612)
T COG3387 556 AKKLLEWLLAFASPLGLLPEQVDDG 580 (612)
T ss_pred HHHHHHHHHHhcCCCCCcchhhcCC
Confidence 7788999999999999988764333
No 96
>PF06662 C5-epim_C: D-glucuronyl C5-epimerase C-terminus; InterPro: IPR010598 This entry consists of known or predicted D-glucuronyl C5-epimerases which share a common C-terminal region. Glucuronyl C5-epimerases catalyse the conversion of D-glucuronic acid (GlcUA) to L-iduronic acid (IdceA) units during the biosynthesis of glycosaminoglycans [].; GO: 0016857 racemase and epimerase activity, acting on carbohydrates and derivatives, 0006024 glycosaminoglycan biosynthetic process, 0016021 integral to membrane
Probab=47.48 E-value=28 Score=28.12 Aligned_cols=100 Identities=22% Similarity=0.230 Sum_probs=46.4
Q ss_pred cccCCCCCCCCCCCCCCcccCCCCCCCCHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcc--cCCCCCCCCcccccc
Q 026485 128 QCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMERDPTPLHRAAKLLINSQ--LEDGDFPQQELTGVF 205 (238)
Q Consensus 128 Q~~dGgw~~~~~~~~~~~y~~~~~~~~~~~~Ta~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q--~~dGgw~~~~~~~~~ 205 (238)
|.++|+|.....-.....+..++.+=-....-+.|+..|.++-....+++-++.|.+-|..-+ ..+||........
T Consensus 1 qd~~g~w~~~~~~~~~~~~~~l~~gW~SamaQG~a~s~l~RAy~~t~d~~Yl~aA~~al~~f~~~~~~GG~~~~~~~~-- 78 (189)
T PF06662_consen 1 QDESGGWPYNFDYKLYEGNEVLSPGWYSAMAQGQAISVLARAYQLTGDEKYLDAAKKALNSFKVPVEEGGVLATFKNK-- 78 (189)
T ss_pred CCCcCccceeeeeccccCcccCCCCcHhHHHHHHHHHHHHHHHHhHCCHHHHHHHHHHHHHhcChHhhCCeeEEecCC--
Confidence 678999976432111000000011111244556677777766444334434444444443333 3467754332110
Q ss_pred CCccccccC-------CchhhHHHHHHHHHHH
Q 026485 206 MENCMLHYP-------IYRNIFPMWALAEYRS 230 (238)
Q Consensus 206 ~~~~~~~~~-------~~~~~~~l~aL~~~~~ 230 (238)
..++-+|+ +.-.+++|.+|..|..
T Consensus 79 -~~wyeEYp~~p~s~VLNGfiysL~GLyd~~~ 109 (189)
T PF06662_consen 79 -YPWYEEYPTTPPSYVLNGFIYSLIGLYDYYR 109 (189)
T ss_pred -cEeEeecCCCCCCEEeehHHHHHHHHHHHHH
Confidence 12222332 2235788888888764
No 97
>cd04792 LanM-like LanM-like proteins. LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.
Probab=45.89 E-value=3.1e+02 Score=27.15 Aligned_cols=88 Identities=13% Similarity=0.074 Sum_probs=44.5
Q ss_pred HHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHhcccCCCCcccc----cccchhhhHHHHHHHHHccc---cCccHHHH
Q 026485 45 ALKAMTLFKKLYPKHRTKEVKNFIAKATKFIEDIQKSDGSWYGSW----GICFTYAAWFAISGLVAAKK---TYSNCLAI 117 (238)
Q Consensus 45 ~l~aL~~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~~dG~w~~~~----~~~~~~~T~~al~aL~~~g~---~~~~~~~i 117 (238)
++.+|..+.+. ...+++.+.+.+++++|...+..+..|.... ..+..++++=++.+|..+.. .....+.+
T Consensus 592 ii~~Ll~l~~~---~~~~~~l~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~G~aHG~sGi~~aL~~l~~~~~d~~~~~~a 668 (825)
T cd04792 592 LILVLLSLYEL---FLSERFLDLALKCGDHLLENASNEDGGIGPAEQPNLTGFAHGASGIAWALLRLYKVTGDSRYLKLA 668 (825)
T ss_pred HHHHHHHHHhc---cCChHHHHHHHHHHHHHHHhhhhccCCcccccccccccccccHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 44555554432 2234456778889999887655543321111 11223344434444544332 22244567
Q ss_pred HHHHHHHHhccccC-CCCC
Q 026485 118 RKATDFLLKIQCED-GGWG 135 (238)
Q Consensus 118 ~~a~~~L~~~Q~~d-Ggw~ 135 (238)
.++++++.+...++ +.|.
T Consensus 669 ~~~l~~~~~~~~~~~~~w~ 687 (825)
T cd04792 669 HKALKYERRLFSEEGWNWP 687 (825)
T ss_pred HHHHHHHHHhcCHhhcCCC
Confidence 77788776654433 4564
No 98
>COG2942 N-acyl-D-glucosamine 2-epimerase [Carbohydrate transport and metabolism]
Probab=44.21 E-value=2.4e+02 Score=25.44 Aligned_cols=85 Identities=16% Similarity=0.151 Sum_probs=56.2
Q ss_pred chHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHH-hcccCCCCcccc-------c-ccchhhhHHHHHHHHHcccc
Q 026485 40 ECTASALKAMTLFKKLYPKHRTKEVKNFIAKATKFIED-IQKSDGSWYGSW-------G-ICFTYAAWFAISGLVAAKKT 110 (238)
Q Consensus 40 d~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~~a~~~L~~-~Q~~dG~w~~~~-------~-~~~~~~T~~al~aL~~~g~~ 110 (238)
-+++.-|-+++..+..-- +. +-..++..+++|+.+ ...++|+|+.-- + ..+.|+-+||++|++.+-..
T Consensus 55 ~~~~Rqvy~fA~A~~~g~--~~-~~~~~v~hG~~y~~~~~R~~~gg~~~~~~~dg~~~Dat~d~Y~haFallA~A~~a~a 131 (388)
T COG2942 55 RVQARQVYCFAVAGLLGW--RG-PWLDAVAHGIAYLARVGRDPEGGWYFALDNDGGPVDATKDLYGHAFALLAAAHAATA 131 (388)
T ss_pred eeehhHHHHHHHHHHhcC--Cc-cHHHHHHhHHHHHHhcCcCCCCCeEEEecCCCCcccccHhHHHHHHHHHHHHHHHhc
Confidence 357788888888765421 11 256899999999985 777889985311 1 23567889999999875432
Q ss_pred C--ccHHHHHHHHHHHHhc
Q 026485 111 Y--SNCLAIRKATDFLLKI 127 (238)
Q Consensus 111 ~--~~~~~i~~a~~~L~~~ 127 (238)
. ..++..+.+.+.|...
T Consensus 132 ~~~~a~~~~~~a~~~l~~~ 150 (388)
T COG2942 132 GPPRADELLDEALDVLERR 150 (388)
T ss_pred CChhHHHHHHHHHHHHHHH
Confidence 1 1346667777766554
No 99
>COG3387 SGA1 Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=42.18 E-value=21 Score=34.26 Aligned_cols=71 Identities=18% Similarity=0.146 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhCCCCCChHHHHHHHHHHHhcccCCCCCCCCccccc-cCCccccc---------cCCchhhHHHHHHHHH
Q 026485 159 TAWAMMSLIHAGQMERDPTPLHRAAKLLINSQLEDGDFPQQELTGV-FMENCMLH---------YPIYRNIFPMWALAEY 228 (238)
Q Consensus 159 Ta~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~~dGgw~~~~~~~~-~~~~~~~~---------~~~~~~~~~l~aL~~~ 228 (238)
+++++.||..+|.. +...+..+|+.+.|.++|.|..-+..++ ....-++. ...=.+.+.+.+|..|
T Consensus 290 ~~~~~~AL~~~G~~----~~a~~~f~~l~~~~~~~~~~~~~y~~~g~~~~~~w~~~~~~~~~~pv~~~~~a~~~~~ld~~ 365 (612)
T COG3387 290 ASYAALALLAIGYK----KEALRFFEFLPDVQTPNGKLYHKYSIDGSDLAESWLPVSGYYNSFPVRIGNTALVQGALDVY 365 (612)
T ss_pred HHHHHHHHHHcCCH----HHHHHHHHHHHHhhCCCCceeeEEecCCCccccccccccCCCCCCceEEcchhhHHHHHHHH
Confidence 55667777777754 3678899999999999887654433332 11111111 1111345666777776
Q ss_pred HHhcc
Q 026485 229 RSRLL 233 (238)
Q Consensus 229 ~~~~~ 233 (238)
-+++.
T Consensus 366 ~~~~~ 370 (612)
T COG3387 366 GSIMN 370 (612)
T ss_pred HHHHH
Confidence 55543
No 100
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases. Some members of this subgroup lack the zinc binding site and the active site residues, and therefore are most likely inactive. The function of this domain is unknown.
Probab=31.02 E-value=3.3e+02 Score=23.07 Aligned_cols=41 Identities=12% Similarity=-0.053 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHhcc-cCCCC
Q 026485 42 TASALKAMTLFKKLYPKHRTKEVKNFIAKATKFIEDIQK-SDGSW 85 (238)
Q Consensus 42 Ta~~l~aL~~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~-~dG~w 85 (238)
++-++.+|..+.+. ..++++.+.+.++++++.+... .+++|
T Consensus 141 ~aGi~~~L~~l~~~---t~d~~~l~~A~~~~~~~~~~~~~~~~g~ 182 (321)
T cd04791 141 WAGIALFLLRLYKA---TGDSRYLELAEEALDKELARAVVDDGGL 182 (321)
T ss_pred cHHHHHHHHHHHHH---HCCHHHHHHHHHHHHHHHHhhccCCCCc
Confidence 55566666666543 2234466788888998876544 34666
No 101
>KOG2787 consensus Lanthionine synthetase C-like protein 1 [Defense mechanisms]
Probab=28.94 E-value=4.2e+02 Score=23.57 Aligned_cols=25 Identities=8% Similarity=0.069 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHhcccCCCCcccc
Q 026485 65 KNFIAKATKFIEDIQKSDGSWYGSW 89 (238)
Q Consensus 65 ~~~i~~a~~~L~~~Q~~dG~w~~~~ 89 (238)
-+.|+..++|++..|-|+|-++..-
T Consensus 244 ~~dVK~sldym~~~rfpsGNyP~s~ 268 (403)
T KOG2787|consen 244 LKDVKGSLDYMIQNRFPSGNYPSSE 268 (403)
T ss_pred HHhhhhHHHHHHHccCCCCCCCccc
Confidence 4789999999999999999997643
No 102
>cd00194 UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.
Probab=28.35 E-value=73 Score=17.79 Aligned_cols=23 Identities=22% Similarity=0.224 Sum_probs=16.1
Q ss_pred HHHHHHHHHhCCCCCChHHHHHHHHHHHh
Q 026485 160 AWAMMSLIHAGQMERDPTPLHRAAKLLIN 188 (238)
Q Consensus 160 a~al~aL~~~g~~~~~~~~v~~a~~~L~~ 188 (238)
..++.||...+. .+++|++||.+
T Consensus 16 ~~~~~AL~~~~~------d~~~A~~~L~~ 38 (38)
T cd00194 16 EEARKALRATNN------NVERAVEWLLE 38 (38)
T ss_pred HHHHHHHHHhCC------CHHHHHHHHhC
Confidence 356777777654 47889999863
No 103
>PF09282 Mago-bind: Mago binding; InterPro: IPR015362 Members of this family adopt a structure consisting of a small globular all-beta-domain, with a three-stranded beta-sheet and a contiguous beta-hairpin. They bind to Mago alpha-helices via extensive electrostatic interactions and at a beta2-beta3 loop via hydrophobic interactions []. ; GO: 0005515 protein binding; PDB: 1RK8_C.
Probab=28.04 E-value=7.1 Score=20.90 Aligned_cols=12 Identities=42% Similarity=0.900 Sum_probs=6.4
Q ss_pred HHHhcccCCCCc
Q 026485 75 IEDIQKSDGSWY 86 (238)
Q Consensus 75 L~~~Q~~dG~w~ 86 (238)
|-..|++||+|-
T Consensus 5 I~~s~RpDGt~R 16 (27)
T PF09282_consen 5 IPASQRPDGTWR 16 (27)
T ss_dssp E--EE-TTS-EE
T ss_pred cCcccCCCCCcc
Confidence 446799999994
No 104
>PF05592 Bac_rhamnosid: Bacterial alpha-L-rhamnosidase; InterPro: IPR008902 This entry consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria [].; PDB: 2OKX_B 3CIH_A.
Probab=27.54 E-value=4.5e+02 Score=24.24 Aligned_cols=65 Identities=14% Similarity=0.047 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHhcccCCCCccccc-------ccchhhhHHHHHHH---HHccccC---ccHHHHHHHHHHHHhcccc
Q 026485 66 NFIAKATKFIEDIQKSDGSWYGSWG-------ICFTYAAWFAISGL---VAAKKTY---SNCLAIRKATDFLLKIQCE 130 (238)
Q Consensus 66 ~~i~~a~~~L~~~Q~~dG~w~~~~~-------~~~~~~T~~al~aL---~~~g~~~---~~~~~i~~a~~~L~~~Q~~ 130 (238)
..++++++.+...|++||.++.... ....|....++..- ...|+.. ..-+.+++.++|+.+...+
T Consensus 169 ~l~~~~l~~~~~~q~~~G~~p~~~P~~~~~~~~~~~w~l~~i~~~~~~y~~tGD~~~l~~~~~~~~~~l~~~~~~~~~ 246 (509)
T PF05592_consen 169 ALYRKWLRDFADSQRPDGLLPSVAPSYGGGGFGIPDWSLAWIIIPWDYYLYTGDREFLEEYYPAMKRYLDYLERRVDD 246 (509)
T ss_dssp HHHHHHHHHHHGGTTTSTT-SSBSS---SSGGGBHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHTTB-T
T ss_pred HHHHHHHHHHHHhhcccCCceEEecccCCCCCCCccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 6899999999999999999974211 11122222222211 1223211 1346788999999998776
No 105
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=27.51 E-value=71 Score=17.96 Aligned_cols=20 Identities=25% Similarity=0.170 Sum_probs=14.0
Q ss_pred HHHHHHHHhCCCCCChHHHHHHHHHH
Q 026485 161 WAMMSLIHAGQMERDPTPLHRAAKLL 186 (238)
Q Consensus 161 ~al~aL~~~g~~~~~~~~v~~a~~~L 186 (238)
-+..||...+. .+++|++||
T Consensus 18 ~~~~AL~~~~~------nve~A~~~L 37 (37)
T PF00627_consen 18 QAREALRACNG------NVERAVDWL 37 (37)
T ss_dssp HHHHHHHHTTT------SHHHHHHHH
T ss_pred HHHHHHHHcCC------CHHHHHHhC
Confidence 45677777654 478888887
No 106
>PF08124 Lyase_8_N: Polysaccharide lyase family 8, N terminal alpha-helical domain; InterPro: IPR012970 This family consists of a group of secreted bacterial lyase enzymes (4.2.2.1 from EC) capable of acting on hyaluronan and chondroitin in the extracellular matrix of host tissues, contributing to the invasive capacity of the pathogen.; PDB: 2WCO_A 2X03_B 2WDA_A 1N7N_A 1W3Y_A 1LXK_A 1LOH_A 1OJO_A 1C82_A 1EGU_A ....
Probab=26.80 E-value=4.3e+02 Score=23.04 Aligned_cols=82 Identities=18% Similarity=0.149 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHhhCCC---cchHHHHHHHHHHHHHHHHhcccCC-----CCcccccccchhhhHHHHHHHHHccccCcc
Q 026485 42 TASALKAMTLFKKLYPK---HRTKEVKNFIAKATKFIEDIQKSDG-----SWYGSWGICFTYAAWFAISGLVAAKKTYSN 113 (238)
Q Consensus 42 Ta~~l~aL~~~~~~~~~---~~~~~~~~~i~~a~~~L~~~Q~~dG-----~w~~~~~~~~~~~T~~al~aL~~~g~~~~~ 113 (238)
+..=|..|+.+... |. +..+++.+.|.+|++|+....-..+ -|- .|..+.. -.....|+.+.+.. .
T Consensus 61 ~~~rL~~mA~Ay~~-p~s~lY~n~~l~~~I~~aL~~~~~~~y~~~~~~~gNWW-~~eIG~P---~~l~~~liLl~d~l-~ 134 (324)
T PF08124_consen 61 HLQRLRTMAKAYAT-PGSSLYQNPALLNAILKALDWWYDNDYNPSKDEYGNWW-DWEIGIP---QALGNILILLYDEL-P 134 (324)
T ss_dssp HHHHHHHHHHHHTS-TTSTTTT-HHHHHHHHHHHHHHHHHTSSTTS-TTSSHH-HHHTHHH---HHHHHHHHHTGGGS-C
T ss_pred HHHHHHHHHHHHcC-CCCcCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCCCcc-ccccchH---HHHHHHHHHccccc-C
Confidence 33345555554432 32 3457788999999999987543333 331 1111111 12334444555543 3
Q ss_pred HHHHHHHHHHHHhccc
Q 026485 114 CLAIRKATDFLLKIQC 129 (238)
Q Consensus 114 ~~~i~~a~~~L~~~Q~ 129 (238)
.+.+.+.++.|...+.
T Consensus 135 ~~~~~~~~~~i~~~~p 150 (324)
T PF08124_consen 135 PELIAKYTAAIDRFVP 150 (324)
T ss_dssp HHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHhCC
Confidence 5667777777766543
No 107
>PF00759 Glyco_hydro_9: Glycosyl hydrolase family 9; InterPro: IPR001701 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 9 GH9 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family E. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1RQ5_A 1CLC_A 3H7L_B 1K72_B 1G87_B 1GA2_A 1KFG_A 1UT9_A 2YIK_A 3RX5_A ....
Probab=25.44 E-value=87 Score=28.39 Aligned_cols=21 Identities=33% Similarity=0.335 Sum_probs=16.6
Q ss_pred cHHHHHHHHHHHHhccccCCC
Q 026485 113 NCLAIRKATDFLLKIQCEDGG 133 (238)
Q Consensus 113 ~~~~i~~a~~~L~~~Q~~dGg 133 (238)
.-++++=.++||+++|.++|.
T Consensus 96 llde~kwg~D~llkm~~~~~~ 116 (444)
T PF00759_consen 96 LLDEAKWGLDWLLKMQDSDGT 116 (444)
T ss_dssp HHHHHHHHHHHHHHTBSCTTE
T ss_pred HHHHHHHHHHHHHhccCCCCc
Confidence 346677889999999999554
No 108
>KOG3760 consensus Heparan sulfate-glucuronic acid C5-epimerase [Carbohydrate transport and metabolism]
Probab=25.01 E-value=48 Score=30.01 Aligned_cols=22 Identities=23% Similarity=0.362 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhcccCCCCCCCC
Q 026485 178 PLHRAAKLLINSQLEDGDFPQQ 199 (238)
Q Consensus 178 ~v~~a~~~L~~~Q~~dGgw~~~ 199 (238)
+.=.|.+||+.+|++.|||.-.
T Consensus 381 aFyaAadWlV~NQd~kGGW~~p 402 (594)
T KOG3760|consen 381 AFYAAADWLVKNQDDKGGWSVP 402 (594)
T ss_pred HHHHHHHHHhhCCCCCCCCcch
Confidence 4556899999999999999843
No 109
>PLN02567 alpha,alpha-trehalase
Probab=24.83 E-value=6.1e+02 Score=24.14 Aligned_cols=68 Identities=19% Similarity=0.247 Sum_probs=44.9
Q ss_pred ccccchhhhHHHHHHHHHccccCccHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcccCCCCCCCCHHHHHHHHHHHHH
Q 026485 89 WGICFTYAAWFAISGLVAAKKTYSNCLAIRKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIH 168 (238)
Q Consensus 89 ~~~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~dGgw~~~~~~~~~~~y~~~~~~~~~~~~Ta~al~aL~~ 168 (238)
..+.+-+.+.+++.+|+..+.. +.++.-++-++..+...|-......++ | -+.|.+..-+.++..+..
T Consensus 150 FrE~yyWDSy~i~~GLl~s~~~----~~A~~mi~Nf~~~i~~~GfIPNg~R~Y----y----l~RSQPPlla~mV~~~~~ 217 (554)
T PLN02567 150 FREVYYWDSYWVIRGLLASKMY----ETAKGVVENLLYLVDTYGFVPNGARAY----Y----TNRSQPPLLSAMVLAVYA 217 (554)
T ss_pred cCccchHHHHHHHHHHHhCCCH----HHHHHHHHHHHHHHHHcCcCCCCCccc----c----cCCCCcHHHHHHHHHHHH
Confidence 3344566899999999998864 456777888888888888876544443 2 234555555555555554
No 110
>COG3538 Uncharacterized conserved protein [Function unknown]
Probab=22.59 E-value=5.7e+02 Score=23.02 Aligned_cols=113 Identities=12% Similarity=0.089 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHhcccCCCC-cc----cccccc-hh-hhHHHHHHHHHccccCccHHHHHHHHHHHHhcccc---CCC
Q 026485 64 VKNFIAKATKFIEDIQKSDGSW-YG----SWGICF-TY-AAWFAISGLVAAKKTYSNCLAIRKATDFLLKIQCE---DGG 133 (238)
Q Consensus 64 ~~~~i~~a~~~L~~~Q~~dG~w-~~----~~~~~~-~~-~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~---dGg 133 (238)
..+.|+++++---..+++.|+= +. ..|+-. .- .-.-.|+++-.+|-....+++-++..+.|++..|| .|.
T Consensus 262 L~~eIq~Gi~~~g~~~~~~~~~iyAyEVDG~Gn~l~MDDaNvPSLLa~PYLG~c~~dDpvY~~TRk~iLS~eNPYy~eG~ 341 (434)
T COG3538 262 LANEIQQGIEQFGKMDHPKGGEIYAYEVDGLGNQLFMDDANVPSLLAAPYLGFCEKDDPVYQNTRKTILSSENPYYYEGK 341 (434)
T ss_pred HHHHHHHHHHHhceecCCCCCeeEEEEecCCCceeeccCCCchhhhhhhhhccccCCCHHHHHHHHHHHhcCCCceecce
Confidence 4467777777777778887652 11 111100 00 11235666667776655788999999999998876 344
Q ss_pred CCCCCCCCCCCcccCCCCCCCCHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhc
Q 026485 134 WGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMERDPTPLHRAAKLLINS 189 (238)
Q Consensus 134 w~~~~~~~~~~~y~~~~~~~~~~~~Ta~al~aL~~~g~~~~~~~~v~~a~~~L~~~ 189 (238)
.....++.+. ....+-.-+.++.+|... |...++.-+++|+.+
T Consensus 342 ~a~GiGSpHT--------p~~yvWpiaLaiqgLTa~-----D~~ek~~iL~~L~~t 384 (434)
T COG3538 342 YASGIGSPHT--------PDHYVWPIALAIQGLTAN-----DDSEKKEILDMLKAT 384 (434)
T ss_pred eeccCCCCCC--------CCcccchHHHHHhhcccC-----ChHHHHHHHHHHHhc
Confidence 3322222111 122344566666666543 333677788888873
No 111
>PLN02909 Endoglucanase
Probab=21.41 E-value=1.2e+02 Score=28.40 Aligned_cols=23 Identities=30% Similarity=0.273 Sum_probs=18.1
Q ss_pred cHHHHHHHHHHHHhccccCCCCC
Q 026485 113 NCLAIRKATDFLLKIQCEDGGWG 135 (238)
Q Consensus 113 ~~~~i~~a~~~L~~~Q~~dGgw~ 135 (238)
...+++=.++||+++|.++|++-
T Consensus 122 ~ldeikw~~D~llk~~~~~~~~y 144 (486)
T PLN02909 122 VRAAIRWGTDYFLKAASRKNRLY 144 (486)
T ss_pred HHHHHHHHHHHHHHhccCCCeEE
Confidence 44667778999999998887754
No 112
>PF06662 C5-epim_C: D-glucuronyl C5-epimerase C-terminus; InterPro: IPR010598 This entry consists of known or predicted D-glucuronyl C5-epimerases which share a common C-terminal region. Glucuronyl C5-epimerases catalyse the conversion of D-glucuronic acid (GlcUA) to L-iduronic acid (IdceA) units during the biosynthesis of glycosaminoglycans [].; GO: 0016857 racemase and epimerase activity, acting on carbohydrates and derivatives, 0006024 glycosaminoglycan biosynthetic process, 0016021 integral to membrane
Probab=20.80 E-value=2.1e+02 Score=23.12 Aligned_cols=121 Identities=16% Similarity=0.141 Sum_probs=60.4
Q ss_pred CCCCCCcccccCCCCchhhhccCcccccccccccCCCcchHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHhccc
Q 026485 2 QSETGGVPAWEPTGAPSWLELLNPIEFLDEVIIEYDKVECTASALKAMTLFKKLYPKHRTKEVKNFIAKATKFIEDIQKS 81 (238)
Q Consensus 2 qn~dGg~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~~ 81 (238)
|.++|||+-.=..+. .+.+.+....|=+.-.-+.+|.+|.++.... .+++.-++.+++++.+.-.- +
T Consensus 1 qd~~g~w~~~~~~~~---------~~~~~~l~~gW~SamaQG~a~s~l~RAy~~t---~d~~Yl~aA~~al~~f~~~~-~ 67 (189)
T PF06662_consen 1 QDESGGWPYNFDYKL---------YEGNEVLSPGWYSAMAQGQAISVLARAYQLT---GDEKYLDAAKKALNSFKVPV-E 67 (189)
T ss_pred CCCcCccceeeeecc---------ccCcccCCCCcHhHHHHHHHHHHHHHHHHhH---CCHHHHHHHHHHHHHhcChH-h
Confidence 789999994322111 0001112223344456888999999877542 23344456666666554332 3
Q ss_pred CCCCcc------cccccch--------hhhHHHHHHHHHccccC---ccHHHHHHHHHHHHhccc--cCCCCC
Q 026485 82 DGSWYG------SWGICFT--------YAAWFAISGLVAAKKTY---SNCLAIRKATDFLLKIQC--EDGGWG 135 (238)
Q Consensus 82 dG~w~~------~~~~~~~--------~~T~~al~aL~~~g~~~---~~~~~i~~a~~~L~~~Q~--~dGgw~ 135 (238)
+||... .|-+.++ .+--++|.+|-.+.... ...+..+++++=|++.-. .-|+|.
T Consensus 68 ~GG~~~~~~~~~~wyeEYp~~p~s~VLNGfiysL~GLyd~~~~~~~~~A~~lf~~Gl~sLk~~Lp~yD~G~wS 140 (189)
T PF06662_consen 68 EGGVLATFKNKYPWYEEYPTTPPSYVLNGFIYSLIGLYDYYRLTGDEEAKELFDKGLKSLKKMLPLYDTGSWS 140 (189)
T ss_pred hCCeeEEecCCcEeEeecCCCCCCEEeehHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence 455421 2222111 13346777776654322 123455666666665432 346553
No 113
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=20.20 E-value=1.1e+02 Score=16.84 Aligned_cols=21 Identities=33% Similarity=0.351 Sum_probs=14.7
Q ss_pred HHHHHHHHhCCCCCChHHHHHHHHHHH
Q 026485 161 WAMMSLIHAGQMERDPTPLHRAAKLLI 187 (238)
Q Consensus 161 ~al~aL~~~g~~~~~~~~v~~a~~~L~ 187 (238)
.++.||...+. .+++|++||.
T Consensus 17 ~a~~aL~~~~~------d~~~A~~~L~ 37 (37)
T smart00165 17 EALKALRAANG------NVERAAEYLL 37 (37)
T ss_pred HHHHHHHHhCC------CHHHHHHHHC
Confidence 56777777653 4778888873
Done!