Query 026485
Match_columns 238
No_of_seqs 175 out of 1591
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 14:41:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026485.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026485hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w6k_A Lanosterol synthase; cy 100.0 2.6E-41 8.8E-46 320.4 22.7 233 1-237 493-728 (732)
2 2sqc_A Squalene-hopene cyclase 100.0 5.9E-38 2E-42 294.0 21.6 219 1-233 410-629 (631)
3 1qqf_A Protein (complement C3D 99.9 4.6E-26 1.6E-30 193.5 17.1 186 1-232 50-277 (277)
4 2wy7_A Complement C3D fragment 99.9 1.4E-25 4.7E-30 193.5 17.5 189 1-235 66-296 (310)
5 2h6f_B Protein farnesyltransfe 99.9 1.6E-25 5.3E-30 200.4 10.7 166 1-210 133-300 (437)
6 3dss_B Geranylgeranyl transfer 99.9 5.8E-25 2E-29 190.8 13.4 163 1-210 78-241 (331)
7 1n4q_B Geranyltransferase type 99.9 1.7E-24 6E-29 190.3 15.4 178 4-210 91-272 (377)
8 1hzf_A Complement factor C4A; 99.9 6.2E-24 2.1E-28 187.2 16.2 186 1-233 103-364 (367)
9 2h6f_B Protein farnesyltransfe 99.9 5.2E-24 1.8E-28 190.6 12.8 174 2-228 87-262 (437)
10 1w6k_A Lanosterol synthase; cy 99.9 2.2E-23 7.5E-28 197.7 15.4 152 36-200 451-633 (732)
11 3q7a_B Farnesyltransferase bet 99.9 5.9E-22 2E-26 178.4 14.9 188 1-211 121-327 (520)
12 3dss_B Geranylgeranyl transfer 99.9 2.7E-21 9.1E-26 167.8 14.0 174 1-228 126-301 (331)
13 2sqc_A Squalene-hopene cyclase 99.9 1.2E-20 4.2E-25 176.7 17.9 178 30-228 366-566 (631)
14 2hr0_B Complement C3 alpha' ch 99.8 7.6E-20 2.6E-24 177.8 16.7 188 1-234 311-540 (915)
15 4acq_A Alpha-2-macroglobulin; 99.8 5.2E-20 1.8E-24 185.5 14.7 191 1-235 995-1248(1451)
16 1r76_A Pectate lyase; A-helica 99.8 5.7E-19 2E-23 154.6 15.1 163 34-197 143-334 (408)
17 2pn5_A TEP1R, thioester-contai 99.8 6.9E-19 2.4E-23 176.9 13.3 185 1-233 884-1106(1325)
18 3q7a_B Farnesyltransferase bet 99.7 2.4E-16 8.2E-21 142.0 15.3 143 35-198 85-236 (520)
19 1n4q_B Geranyltransferase type 99.7 8.9E-17 3.1E-21 141.3 10.2 144 35-200 44-214 (377)
20 1gxm_A Pectate lyase; mechanis 99.7 1.3E-16 4.5E-21 136.1 10.7 177 1-191 43-251 (332)
21 1r76_A Pectate lyase; A-helica 99.7 5.8E-17 2E-21 141.9 8.0 121 1-135 187-334 (408)
22 4fxk_B Complement C4-A alpha c 99.7 1.9E-15 6.4E-20 144.6 19.1 189 1-235 380-643 (767)
23 3prx_B Cobra venom factor; imm 99.6 2E-17 6.9E-22 167.8 0.1 189 1-234 1042-1269(1642)
24 1hzf_A Complement factor C4A; 99.6 7.8E-15 2.7E-19 129.0 14.1 127 62-189 87-226 (367)
25 1qqf_A Protein (complement C3D 99.6 1.9E-14 6.4E-19 121.8 13.1 131 61-192 33-173 (277)
26 1gxm_A Pectate lyase; mechanis 99.6 7E-16 2.4E-20 131.6 3.1 117 1-130 109-252 (332)
27 2b39_A C3; thioester, immune d 99.6 3E-14 1E-18 145.9 15.6 188 1-234 1058-1287(1661)
28 2wy7_A Complement C3D fragment 99.6 3.8E-14 1.3E-18 121.8 13.6 130 62-192 50-189 (310)
29 3cu7_A Complement C5; Mg domai 99.5 1.2E-13 4.1E-18 141.5 18.3 186 1-234 1059-1306(1676)
30 3dra_B Geranylgeranyltransfera 99.5 2.5E-13 8.4E-18 119.4 13.5 136 35-191 90-252 (390)
31 4acq_A Alpha-2-macroglobulin; 99.3 1.2E-11 4.1E-16 125.0 14.0 120 64-189 981-1108(1451)
32 3dra_B Geranylgeranyltransfera 99.3 1.9E-11 6.5E-16 107.4 12.3 140 67-230 192-362 (390)
33 2hr0_B Complement C3 alpha' ch 99.2 2.3E-10 7.8E-15 111.3 13.8 124 64-192 297-434 (915)
34 2bb6_A TCII, TC II, transcobal 99.1 2.4E-10 8.1E-15 100.7 10.8 107 35-168 174-283 (414)
35 2pn5_A TEP1R, thioester-contai 99.1 1.4E-10 4.9E-15 116.7 8.9 131 63-197 869-1005(1325)
36 2pmv_A Gastric intrinsic facto 99.0 1.4E-09 4.7E-14 95.3 9.9 107 35-168 148-259 (399)
37 4fxk_B Complement C4-A alpha c 99.0 6.5E-09 2.2E-13 99.4 14.3 148 41-189 341-503 (767)
38 2bb6_A TCII, TC II, transcobal 98.9 3.3E-09 1.1E-13 93.4 9.8 125 41-199 138-271 (414)
39 2pmv_A Gastric intrinsic facto 98.9 7.1E-09 2.4E-13 90.8 10.1 121 41-199 116-247 (399)
40 2b39_A C3; thioester, immune d 98.7 1.4E-07 4.9E-12 96.8 15.3 124 64-189 1044-1178(1661)
41 3prx_B Cobra venom factor; imm 98.7 1.2E-09 4.2E-14 111.2 0.0 125 64-189 1028-1162(1642)
42 3cu7_A Complement C5; Mg domai 98.5 3.6E-07 1.2E-11 94.0 9.8 121 64-189 1045-1178(1676)
43 3pya_A ENT-copalyl diphosphate 97.4 0.0004 1.4E-08 65.5 8.1 82 91-190 31-112 (727)
44 3s9v_A Abietadiene synthase, c 97.3 0.00052 1.8E-08 65.4 8.4 84 91-190 53-136 (785)
45 3sdr_A Alpha-bisabolene syntha 97.3 0.00045 1.6E-08 66.1 7.4 85 91-191 80-164 (817)
46 3p5p_A Taxadiene synthase; cla 97.2 0.0005 1.7E-08 65.3 7.1 84 91-190 30-115 (764)
47 3pmm_A Putative cytoplasmic pr 97.0 0.017 5.9E-07 50.5 14.5 180 40-232 170-381 (382)
48 3k11_A Putative glycosyl hydro 96.8 0.077 2.6E-06 47.3 16.5 186 40-234 202-416 (445)
49 3pya_A ENT-copalyl diphosphate 96.6 0.0029 9.9E-08 59.7 6.3 58 67-127 51-111 (727)
50 1nc5_A Hypothetical protein YT 96.5 0.11 3.6E-06 45.2 15.7 184 40-233 143-369 (373)
51 3p5p_A Taxadiene synthase; cla 96.5 0.003 1E-07 60.0 6.1 59 67-128 54-115 (764)
52 3pmm_A Putative cytoplasmic pr 96.5 0.054 1.9E-06 47.3 13.6 127 42-169 235-377 (382)
53 3s9v_A Abietadiene synthase, c 96.5 0.0029 1E-07 60.3 5.8 58 67-127 75-135 (785)
54 3sdr_A Alpha-bisabolene syntha 96.5 0.0033 1.1E-07 60.2 6.1 58 67-127 102-162 (817)
55 1lf6_A Glucoamylase; (alpha/al 95.5 0.22 7.4E-06 46.8 13.5 124 66-199 296-440 (684)
56 2gz6_A N-acetyl-D-glucosamine 95.4 0.18 6.1E-06 43.5 11.7 93 40-134 53-158 (388)
57 1ulv_A Glucodextranase; GH fam 95.2 0.46 1.6E-05 46.7 14.8 128 63-199 281-432 (1020)
58 3k11_A Putative glycosyl hydro 94.1 0.21 7.2E-06 44.4 8.9 95 42-136 268-373 (445)
59 1nc5_A Hypothetical protein YT 92.5 0.8 2.7E-05 39.5 9.9 128 42-169 215-364 (373)
60 2gz6_A N-acetyl-D-glucosamine 92.3 0.97 3.3E-05 38.8 10.2 127 66-197 15-159 (388)
61 1lf6_A Glucoamylase; (alpha/al 90.4 1.8 6E-05 40.6 10.5 77 41-128 344-429 (684)
62 1fp3_A N-acyl-D-glucosamine 2- 87.4 3.6 0.00012 35.4 9.8 95 40-134 56-166 (402)
63 3e6u_A LANC-like protein 1; al 87.3 4.9 0.00017 35.0 10.6 40 45-87 236-275 (411)
64 3gt5_A N-acetylglucosamine 2-e 86.9 9.6 0.00033 32.9 12.2 92 41-135 53-157 (402)
65 3gt5_A N-acetylglucosamine 2-e 86.7 3.1 0.00011 36.1 8.9 127 65-197 12-157 (402)
66 3h7l_A Endoglucanase; dehydrog 83.1 28 0.00095 31.9 15.6 169 42-235 164-382 (586)
67 2vn4_A Glucoamylase; hydrolase 82.6 21 0.00073 32.7 12.9 125 69-199 11-181 (599)
68 2zbl_A Putative isomerase; N-a 82.6 12 0.0004 32.6 10.8 93 40-137 51-157 (421)
69 1ulv_A Glucodextranase; GH fam 80.6 14 0.00046 36.4 11.3 78 40-127 332-420 (1020)
70 3ren_A Glycosyl hydrolase, fam 80.2 19 0.00066 30.7 10.9 147 65-228 190-348 (350)
71 1wgn_A UBAP1, ubiquitin associ 78.5 2.6 8.8E-05 26.5 3.6 28 99-132 35-62 (63)
72 1wgn_A UBAP1, ubiquitin associ 77.1 2.3 7.9E-05 26.7 3.1 27 161-193 35-61 (63)
73 2dna_A Unnamed protein product 74.7 3.5 0.00012 26.4 3.6 27 100-132 37-63 (67)
74 1fp3_A N-acyl-D-glucosamine 2- 72.2 19 0.00066 30.7 9.1 129 64-197 15-167 (402)
75 2vn4_A Glucoamylase; hydrolase 70.4 25 0.00085 32.3 9.7 91 41-137 54-181 (599)
76 2dna_A Unnamed protein product 70.4 4 0.00014 26.1 3.1 26 163-194 38-63 (67)
77 4ae4_A Ubiquitin-associated pr 68.7 4.8 0.00016 28.8 3.6 60 68-127 36-114 (118)
78 2fba_A Glucoamylase Glu1; (alp 68.4 65 0.0022 28.7 12.4 120 96-228 70-230 (492)
79 3e6u_A LANC-like protein 1; al 65.9 65 0.0022 27.8 12.7 43 94-136 230-275 (411)
80 2ahf_A Unsaturated glucuronyl 65.2 66 0.0023 27.6 15.2 179 41-231 149-367 (377)
81 1vej_A Riken cDNA 4931431F19; 61.9 9.2 0.00031 24.9 3.6 27 99-131 46-72 (74)
82 2zzr_A Unsaturated glucuronyl 61.8 79 0.0027 27.3 14.8 181 40-230 173-391 (397)
83 1vg5_A RSGI RUH-014, rhomboid 61.2 7.5 0.00026 25.3 3.1 27 161-193 45-71 (73)
84 1vej_A Riken cDNA 4931431F19; 59.9 8.5 0.00029 25.1 3.2 26 162-193 47-72 (74)
85 2ahf_A Unsaturated glucuronyl 59.5 47 0.0016 28.5 8.8 134 61-195 106-262 (377)
86 2p0v_A Hypothetical protein BT 58.4 60 0.002 29.0 9.4 176 40-227 180-410 (489)
87 1gai_A Glucoamylase-471; hydro 58.1 1E+02 0.0034 27.3 13.5 144 69-229 12-199 (472)
88 1wji_A Tudor domain containing 57.3 8.6 0.00029 24.2 2.8 27 161-193 25-51 (63)
89 2knz_A Ubiquilin-4; cytoplasm, 57.1 8.3 0.00029 23.2 2.7 24 161-190 28-51 (53)
90 1vg5_A RSGI RUH-014, rhomboid 56.7 11 0.00038 24.4 3.4 27 99-131 45-71 (73)
91 1wiv_A UBP14, ubiquitin-specif 54.3 12 0.00042 24.2 3.3 26 161-192 45-70 (73)
92 2g0d_A Nisin biosynthesis prot 54.2 89 0.003 26.5 9.9 24 113-136 228-254 (409)
93 2dah_A Ubiquilin-3; UBA domain 54.0 15 0.0005 22.3 3.4 25 100-130 27-51 (54)
94 2cpw_A CBL-interacting protein 53.6 15 0.0005 23.1 3.5 27 99-130 35-61 (64)
95 2zzr_A Unsaturated glucuronyl 51.5 38 0.0013 29.4 6.9 135 61-195 132-287 (397)
96 2crn_A Ubash3A protein; compac 50.4 13 0.00043 23.4 2.8 28 160-192 24-51 (64)
97 3k7x_A LIN0763 protein; Q92DQ0 50.4 57 0.002 27.5 7.8 166 41-228 47-225 (349)
98 3eu8_A Putative glucoamylase; 46.7 1.1E+02 0.0036 26.9 8.9 89 39-128 64-170 (430)
99 1whc_A RSGI RUH-027, UBA/UBX 3 45.4 16 0.00056 22.8 2.7 28 160-192 24-51 (64)
100 1veg_A NEDD8 ultimate buster-1 42.6 17 0.00057 24.3 2.5 24 162-191 46-69 (83)
101 2g0d_A Nisin biosynthesis prot 42.2 1.6E+02 0.0054 24.9 14.2 26 62-87 226-254 (409)
102 2bwb_A Ubiquitin-like protein 42.1 18 0.0006 21.1 2.3 21 162-188 25-45 (46)
103 2g3q_A Protein YBL047C; endocy 42.1 19 0.00065 20.3 2.4 23 161-189 20-42 (43)
104 2cos_A Serine/threonine protei 41.9 51 0.0018 19.9 4.3 29 160-193 24-52 (54)
105 2jy5_A Ubiquilin-1; UBA, alter 41.7 15 0.0005 22.0 1.9 23 161-189 29-51 (52)
106 1wr1_B Ubiquitin-like protein 41.6 19 0.00066 22.1 2.5 22 162-189 35-56 (58)
107 2fba_A Glucoamylase Glu1; (alp 41.2 1.9E+02 0.0065 25.6 11.2 44 41-86 70-116 (492)
108 2dag_A Ubiquitin carboxyl-term 40.6 21 0.00073 23.1 2.8 27 161-192 25-51 (74)
109 4fnv_A Heparinase III protein, 39.0 2.4E+02 0.0083 26.2 11.1 18 177-194 344-361 (702)
110 2ekk_A UBA domain from E3 ubiq 38.5 31 0.001 19.9 3.0 22 99-127 25-46 (47)
111 2dak_A Ubiquitin carboxyl-term 38.3 22 0.00074 22.1 2.5 26 99-130 25-50 (63)
112 2dai_A Ubadc1, ubiquitin assoc 38.3 37 0.0013 22.5 3.7 26 99-130 45-70 (83)
113 1vek_A UBP14, ubiquitin-specif 34.6 30 0.001 23.0 2.8 26 161-191 45-70 (84)
114 3a0o_A Oligo alginate lyase; a 34.4 2E+02 0.0069 26.8 9.6 84 98-195 319-410 (776)
115 1ut9_A Cellulose 1,4-beta-cell 34.3 1.2E+02 0.0041 27.8 7.7 19 114-132 230-248 (609)
116 1ify_A HHR23A, UV excision rep 33.3 19 0.00066 21.1 1.5 22 161-188 24-45 (49)
117 1gai_A Glucoamylase-471; hydro 33.3 2.1E+02 0.0073 25.2 9.0 24 114-137 155-180 (472)
118 2cwb_A Chimera of immunoglobul 29.2 43 0.0015 23.4 3.0 23 161-189 83-105 (108)
119 4fnv_A Heparinase III protein, 28.8 2.5E+02 0.0084 26.2 9.0 20 113-132 342-361 (702)
120 1wj7_A Hypothetical protein (R 26.3 59 0.002 22.5 3.2 33 161-199 56-88 (104)
121 2dkl_A Trinucleotide repeat co 26.3 49 0.0017 22.0 2.8 15 178-192 48-62 (85)
122 2z07_A Putative uncharacterize 24.7 3.2E+02 0.011 23.1 9.0 65 67-135 4-70 (420)
123 3a0o_A Oligo alginate lyase; a 23.9 1.6E+02 0.0054 27.5 6.8 69 64-134 334-411 (776)
124 2okx_A Rhamnosidase B; alpha b 23.7 1.6E+02 0.0054 28.5 6.9 85 40-134 579-674 (956)
125 3e7j_A Heparinase II protein; 23.0 3.9E+02 0.013 25.1 9.2 18 178-195 261-278 (749)
126 2zbl_A Putative isomerase; N-a 21.6 83 0.0028 27.0 4.1 70 156-228 50-123 (421)
127 3c5t_B Exendin-4, exenatide; l 20.6 88 0.003 16.6 2.5 17 114-130 8-24 (31)
No 1
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*
Probab=100.00 E-value=2.6e-41 Score=320.44 Aligned_cols=233 Identities=37% Similarity=0.836 Sum_probs=206.6
Q ss_pred CCCCCCCcccccCCCCchhhhccCcccccccccccCCCcchHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHhcc
Q 026485 1 MQSETGGVPAWEPTGAPSWLELLNPIEFLDEVIIEYDKVECTASALKAMTLFKKLYPKHRTKEVKNFIAKATKFIEDIQK 80 (238)
Q Consensus 1 ~qn~dGg~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~ 80 (238)
+||+||||++|+..++..|++.++|.+.|++.+++++++++|+.+|.+|..++...+.++.+++++.|+++++||++.|+
T Consensus 493 ~Q~~DGgw~a~~~~~~~~~l~~i~~~e~fg~~~~d~s~v~~Ta~vL~aL~~~~~~~~~~~~~~~~~~i~rAv~yL~~~Q~ 572 (732)
T 1w6k_A 493 MRNPDGGFATYETKRGGHLLELLNPSEVFGDIMIDYTYVECTSAVMQALKYFHKRFPEHRAAEIRETLTQGLEFCRRQQR 572 (732)
T ss_dssp TCCTTSCBCSSSCCCSCGGGGGGCCCSSCSSCSSCCCBHHHHHHHHHHHHHHHHHCTTSSHHHHHHHHHHHHHHHHHHSC
T ss_pred hcCCCCCEEeecCCCchHHHhhCcchhcccccccCCCcchHHHHHHHHHHHhccccccccchhhHHHHHHHHHHHHhhcC
Confidence 69999999999999999999999999999998999999999999999999998765666656677899999999999999
Q ss_pred cCCCCcccccccchhhhHHHHHHHHHccccCccH---HHHHHHHHHHHhccccCCCCCCCCCCCCCCcccCCCCCCCCHH
Q 026485 81 SDGSWYGSWGICFTYAAWFAISGLVAAKKTYSNC---LAIRKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLV 157 (238)
Q Consensus 81 ~dG~w~~~~~~~~~~~T~~al~aL~~~g~~~~~~---~~i~~a~~~L~~~Q~~dGgw~~~~~~~~~~~y~~~~~~~~~~~ 157 (238)
+||+|.+.|+.+++|.|++++.||..+|...... +.++||++||+++|++||||++...++....|.+ +..+++.
T Consensus 573 ~DGsW~g~wg~~~~Y~T~~al~AL~~aG~~~~~~~~~~~i~rav~~Lls~Q~~DGGWge~~~s~~~~~y~~--~~~s~v~ 650 (732)
T 1w6k_A 573 ADGSWEGSWGVCFTYGTWFGLEAFACMGQTYRDGTACAEVSRACDFLLSRQMADGGWGEDFESCEERRYVQ--SAQSQIH 650 (732)
T ss_dssp TTSCCCCSSBSSHHHHHHHHHHHHHHTTCCCBTTBCCHHHHHHHHHHHTTCCTTSCCCBCTHHHHHTSCCB--CSSCCHH
T ss_pred CCCCccCcCCCccchHHHHHHHHHHHhCCcccccchhHHHHHHHHHHHHhcccCCCCCCCCccccccccCC--CCCCCHH
Confidence 9999999999999999999999999999864222 7899999999999999999998654333333443 4568899
Q ss_pred HHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcccCCCCCCCCccccccCCccccccCCchhhHHHHHHHHHHHhccCCCC
Q 026485 158 QTAWAMMSLIHAGQMERDPTPLHRAAKLLINSQLEDGDFPQQELTGVFMENCMLHYPIYRNIFPMWALAEYRSRLLLPEI 237 (238)
Q Consensus 158 ~Ta~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~~dGgw~~~~~~~~~~~~~~~~~~~~~~~~~l~aL~~~~~~~~~~~~ 237 (238)
.|+|||++|..++.. +.++++++++||+++|+++|+|.++...|+|++.|||+|+.|+.+|+|+||++|+++++..++
T Consensus 651 ~TAwALlALl~ag~~--~~~~i~r~v~wL~~~Q~~~Ggf~~~~~~g~f~~~~~i~Y~~y~~~fpl~AL~~y~~~~~~~~~ 728 (732)
T 1w6k_A 651 NTCWAMMGLMAVRHP--DIEAQERGVRCLLEKQLPNGDWPQENIAGVFNKSCAISYTSYRNIFPIWALGRFSQLYPERAL 728 (732)
T ss_dssp HHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHCCTTSCCCCCSCCEEETTTEEECCTTHHHHHHHHHHHHHHHHCTTSGG
T ss_pred HHHHHHHHHHHcCCC--ChHHHHHHHHHHHHhcCCCCCccCCcccccccchhhhcccchhHHHHHHHHHHHHHhcchhhc
Confidence 999999999998765 456899999999999999999999999999999999999999999999999999999877654
No 2
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*
Probab=100.00 E-value=5.9e-38 Score=293.97 Aligned_cols=219 Identities=31% Similarity=0.520 Sum_probs=188.5
Q ss_pred CCCCCCCcccccCCCCchhhhccCcccccccccccCCCcchHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHhcc
Q 026485 1 MQSETGGVPAWEPTGAPSWLELLNPIEFLDEVIIEYDKVECTASALKAMTLFKKLYPKHRTKEVKNFIAKATKFIEDIQK 80 (238)
Q Consensus 1 ~qn~dGg~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~ 80 (238)
+|++||||+.|+..++..|++.++..+ .+...+++++++|+.+|.+|..++. +. .++.++++++||++.|+
T Consensus 410 ~Q~~dGgf~~~~~~~~~~~~~~~~F~~--~~~~~d~~~vd~Ta~vl~aL~~~g~--~~-----~~~~i~rai~~L~~~Q~ 480 (631)
T 2sqc_A 410 MQSSNGGWGAYDVDNTSDLPNHIPFSD--FGEVTDPPSEDVTAHVLECFGSFGY--DD-----AWKVIRRAVEYLKREQK 480 (631)
T ss_dssp TCCTTSCBCSSCSSCCCSGGGGSTTCS--SSCSSCCCBHHHHHHHHHHHHTTTC--CT-----TSHHHHHHHHHHHHHCC
T ss_pred hcCCCCCCCccCCCCcccccccccccc--CCcccCCCCchHHHHHHHHHHhcCC--Cc-----cHHHHHHHHHHHHHhcC
Confidence 699999999999988888888775321 1225678999999999999998763 22 13689999999999999
Q ss_pred cCCCCcccccccchhhhHHHHHHHHHccccCccHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcccCCCCCCCCHHHHH
Q 026485 81 SDGSWYGSWGICFTYAAWFAISGLVAAKKTYSNCLAIRKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTA 160 (238)
Q Consensus 81 ~dG~w~~~~~~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~dGgw~~~~~~~~~~~y~~~~~~~~~~~~Ta 160 (238)
+||+|.+.|+.+++|.|++++.+|..++... ..+.++|+++||+++|++||||++....+....|.+ ++.++++.|+
T Consensus 481 ~DGsw~g~wg~~~~y~Ta~~l~aL~~~g~~~-~~~~i~rav~~L~s~Q~~DGgWg~~~~sy~~~~~~~--~~~s~v~~Ta 557 (631)
T 2sqc_A 481 PDGSWFGRWGVNYLYGTGAVVSALKAVGIDT-REPYIQKALDWVEQHQNPDGGWGEDCRSYEDPAYAG--KGASTPSQTA 557 (631)
T ss_dssp TTSCCCCSSBSSHHHHHHHHHHHHHHTTCCT-TSHHHHHHHHHHHHTCCTTSCCCCCGGGGTCGGGTT--CSSCCHHHHH
T ss_pred CCCCCCCCCCCCchHHHHHHHHHHHHhCCcc-cHHHHHHHHHHHHHhCcCCCCcCCccccccccccCC--CCCCCHHHHH
Confidence 9999999999889999999999999998764 568899999999999999999988765554444433 4578999999
Q ss_pred HHHHHHHHhCCCCCChHHHHHHHHHHHhcccCCCCCCCCccccc-cCCccccccCCchhhHHHHHHHHHHHhcc
Q 026485 161 WAMMSLIHAGQMERDPTPLHRAAKLLINSQLEDGDFPQQELTGV-FMENCMLHYPIYRNIFPMWALAEYRSRLL 233 (238)
Q Consensus 161 ~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~~dGgw~~~~~~~~-~~~~~~~~~~~~~~~~~l~aL~~~~~~~~ 233 (238)
|||++|..++... .+.++|+++||+++|++||||.+++.+|+ |+.+|||+|+.|+++|+|+||++|++++.
T Consensus 558 ~ALlaL~~ag~~~--~~~i~rav~wL~~~Q~~dGgw~~~~~tg~gf~~~~yl~y~~y~~~f~l~AL~~y~~~~~ 629 (631)
T 2sqc_A 558 WALMALIAGGRAE--SEAARRGVQYLVETQRPDGGWDEPYYTGTGFPGDFYLGYTMYRHVFPTLALGRYKQAIE 629 (631)
T ss_dssp HHHHHHHHTTCSS--SHHHHHHHHHHHHHCCTTSCCCCCSCCEEEETTTEEEEETTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCC--hHHHHHHHHHHHhccCCCCCcCCCCcccccccccceeeccchhhHHHHHHHHHHHHHhh
Confidence 9999999998763 35899999999999999999999999998 99999999999999999999999999874
No 3
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A
Probab=99.94 E-value=4.6e-26 Score=193.48 Aligned_cols=186 Identities=18% Similarity=0.237 Sum_probs=136.1
Q ss_pred CCCCCCCcccccCCCCchhhhccCcccccccccccCCCcchHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHH-hc
Q 026485 1 MQSETGGVPAWEPTGAPSWLELLNPIEFLDEVIIEYDKVECTASALKAMTLFKKLYPKHRTKEVKNFIAKATKFIED-IQ 79 (238)
Q Consensus 1 ~qn~dGg~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~~a~~~L~~-~Q 79 (238)
||++||||+.|+...++.|| |++|+++|..+.+... . .++.|+++++||.+ .|
T Consensus 50 ~q~~dGgf~~f~~~~~s~wl---------------------Ta~v~~~l~~a~~~~~--v---~~~~i~~a~~~L~~~~Q 103 (277)
T 1qqf_A 50 FKQPISAYAAFNNRPPSTWL---------------------TAYVSRVFSLAANLIA--I---DSQVLCGAVKWLILEKQ 103 (277)
T ss_dssp TBCTTSCBCSSTTSCCCHHH---------------------HHHHHHHHHHHTTTSC--C---CHHHHHHHHHHHHHHHB
T ss_pred hcCCCCCccccCCCCccHHH---------------------HHHHHHHHHHHhhcCC--C---CHHHHHHHHHHHHHhcc
Confidence 69999999999987666666 9999999999875321 1 13689999999996 99
Q ss_pred ccCCCCccccccc--------------chhhhHHHHHHHHHcccc-----CccHHHHHHHHHHHHhcccc-CCCCCC---
Q 026485 80 KSDGSWYGSWGIC--------------FTYAAWFAISGLVAAKKT-----YSNCLAIRKATDFLLKIQCE-DGGWGE--- 136 (238)
Q Consensus 80 ~~dG~w~~~~~~~--------------~~~~T~~al~aL~~~g~~-----~~~~~~i~~a~~~L~~~Q~~-dGgw~~--- 136 (238)
++||+|.+.+... ..+.|++++.+|.+.+.. ....+.|+||++||.++|++ ++.|..
T Consensus 104 ~~dG~f~~~~~~~~~~~~g~~~~~~~~~~~lta~vl~aL~~~~~~~~~~~~~~~~~i~~A~~~L~~~~~~~~~~y~~a~~ 183 (277)
T 1qqf_A 104 KPDGVFQEDGPVIHQEMIGGFRNTKEADVSLTAFVLIALQEARDICEGQVNSLPGSINKAGEYLEASYLNLQRPYTVAIA 183 (277)
T ss_dssp CTTSCBCCSSCCSCGGGGGGGGSCTTHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred CCCCCccCCccccchhhcCCCCCCccCccchHHHHHHHHHhhhhccccCCCchHHHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 9999998765421 245689999999988542 22568899999999998774 221100
Q ss_pred ----------CCC-------CCCCCcccCCCCC-CCCHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcccCCCCCCC
Q 026485 137 ----------SYR-------SCPNKKYIPLDGN-RSNLVQTAWAMMSLIHAGQMERDPTPLHRAAKLLINSQLEDGDFPQ 198 (238)
Q Consensus 137 ----------~~~-------~~~~~~y~~~~~~-~~~~~~Ta~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~~dGgw~~ 198 (238)
... ......|+..++. ..+++.|+|||++|...+.. +.+.+.++||+++|+++|||..
T Consensus 184 ayAl~l~g~~~~~~l~~l~~~~~~~~~w~~~~~~~~~ve~Ta~aLlal~~~~~~----~~~~~~v~wL~~qq~~~Ggw~s 259 (277)
T 1qqf_A 184 GYALALMNKLEEPYLTKFLNTAKDRNRWEEPGQQLYNVEATSYALLALLLLKDF----DSVPPVVRWLNDERYYGGGYGS 259 (277)
T ss_dssp HHHHHHTTCCCTTHHHHHHHHSBTTTBCCCTTCHHHHHHHHHHHHHHHHHTTCT----TSHHHHHHHHHHCCCCTTSTTC
T ss_pred HHHHHHcCChHHHHHHHHHHhccCCCCCCCCCCccchhHHHHHHHHHHHhcCCh----hhHHHHHHHHHHccCCCCCeec
Confidence 000 0000112110111 12678999999999998653 2689999999999999999998
Q ss_pred CccccccCCccccccCCchhhHHHHHHHHHHHhc
Q 026485 199 QELTGVFMENCMLHYPIYRNIFPMWALAEYRSRL 232 (238)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~l~aL~~~~~~~ 232 (238)
.+. |+++|+||++|..++
T Consensus 260 Tq~----------------T~~aL~AL~~y~~~~ 277 (277)
T 1qqf_A 260 TQA----------------TFMVFQALAQYRADV 277 (277)
T ss_dssp HHH----------------HHHHHHHHHHHHHHC
T ss_pred chH----------------HHHHHHHHHHHHHhC
Confidence 763 889999999998764
No 4
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A
Probab=99.94 E-value=1.4e-25 Score=193.55 Aligned_cols=189 Identities=20% Similarity=0.221 Sum_probs=137.9
Q ss_pred CCCCCCCcccccCCCCchhhhccCcccccccccccCCCcchHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHH-hc
Q 026485 1 MQSETGGVPAWEPTGAPSWLELLNPIEFLDEVIIEYDKVECTASALKAMTLFKKLYPKHRTKEVKNFIAKATKFIED-IQ 79 (238)
Q Consensus 1 ~qn~dGg~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~~a~~~L~~-~Q 79 (238)
||++||||+.|+...++.|| |++|+++|..+.+... . .++.++++++||.+ .|
T Consensus 66 ~q~~dGgf~~f~~~~~s~wl---------------------Ta~v~~~l~~a~~~~~--v---~~~~i~~a~~~L~~~~Q 119 (310)
T 2wy7_A 66 FRQPSSAFAAFVKRAPSTWL---------------------TAYVVKVFSLAVNLIA--I---DSQVLCGAVKWLILEKQ 119 (310)
T ss_dssp TBCTTSCBCSSTTSCCCHHH---------------------HHHHHHHHHHHTTTSC--C---CHHHHHHHHHHHHHHHB
T ss_pred hcCCCCCcccCCCCCccHHH---------------------HHHHHHHHHHHHhcCC--C---CHHHHHHHHHHHHHhhc
Confidence 69999999999987666666 9999999999875321 1 13689999999996 99
Q ss_pred ccCCCCccccccc--------------chhhhHHHHHHHHHcccc-----CccHHHHHHHHHHHHhcccc-CCCCCCC--
Q 026485 80 KSDGSWYGSWGIC--------------FTYAAWFAISGLVAAKKT-----YSNCLAIRKATDFLLKIQCE-DGGWGES-- 137 (238)
Q Consensus 80 ~~dG~w~~~~~~~--------------~~~~T~~al~aL~~~g~~-----~~~~~~i~~a~~~L~~~Q~~-dGgw~~~-- 137 (238)
++||+|.+.|... ..+.|++++.+|.+.+.. ....+.++||++||.++|++ ++.|...
T Consensus 120 ~~dGsf~~~~~~~~~~~~g~~~~~~~~~~~~ta~vl~aL~~~~~~~~~~~~~~~~~i~~A~~~L~~~~~~~~~~y~~a~~ 199 (310)
T 2wy7_A 120 KPDGVFQEDAPVIHQEMIGGLRNNNEKDMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLEANYMNLQRSYTVAIA 199 (310)
T ss_dssp CTTSCBCCSSCCSCGGGGGGGTTCSCHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHGGGCCCHHHHHHH
T ss_pred CCCCccccCCCccCHhhcCCcccccccccchHHHHHHHHHhcccccccCCcchHHHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 9999998766422 245689999999988542 22568899999999999875 2211100
Q ss_pred -----------CC------C-CCCCcccCCCCC-CCCHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcccCCCCCCC
Q 026485 138 -----------YR------S-CPNKKYIPLDGN-RSNLVQTAWAMMSLIHAGQMERDPTPLHRAAKLLINSQLEDGDFPQ 198 (238)
Q Consensus 138 -----------~~------~-~~~~~y~~~~~~-~~~~~~Ta~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~~dGgw~~ 198 (238)
.. . .....|+..++. ..+++.|+|||++|...+.. +.+.+.++||+++|+++|||..
T Consensus 200 ayAL~l~g~~~~~~l~~l~~~~~~~~~w~~~~~~~~~ve~Ta~aLlal~~~~~~----~~~~~~v~wL~~qq~~~Ggw~s 275 (310)
T 2wy7_A 200 GYALAQMGRLKGPLLNKFLTTAKDKNRWEDPGKQLYNVEATSYALLALLQLKDF----DFVPPVVRWLNEQRYYGGGYGS 275 (310)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHSBTTTBCCCSSCHHHHHHHHHHHHHHHHHHTCT----TTHHHHHHHHHHTTCCCCSTTC
T ss_pred HHHHHhcCCcHHHHHHHHHHhccCCCCCCCCCCcccchHHHHHHHHHHHhcCCh----hhHHHHHHHHHHccCCCCCeec
Confidence 00 0 001112211111 12678999999999998753 2689999999999999999987
Q ss_pred CccccccCCccccccCCchhhHHHHHHHHHHHhccCC
Q 026485 199 QELTGVFMENCMLHYPIYRNIFPMWALAEYRSRLLLP 235 (238)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~l~aL~~~~~~~~~~ 235 (238)
.+ .++++|+||++|.++++.+
T Consensus 276 Tq----------------~T~~aL~AL~~y~~~~~~~ 296 (310)
T 2wy7_A 276 TQ----------------ATFMVFQALAQYQKDAPDH 296 (310)
T ss_dssp HH----------------HHHHHHHHHHHHHHHCC--
T ss_pred cH----------------HHHHHHHHHHHHHHHcCCC
Confidence 65 3889999999999988654
No 5
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ...
Probab=99.92 E-value=1.6e-25 Score=200.45 Aligned_cols=166 Identities=17% Similarity=0.178 Sum_probs=131.5
Q ss_pred CCCCCCCcccccCCCCchhhhccCcccccccccccCCCcchHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHhcc
Q 026485 1 MQSETGGVPAWEPTGAPSWLELLNPIEFLDEVIIEYDKVECTASALKAMTLFKKLYPKHRTKEVKNFIAKATKFIEDIQK 80 (238)
Q Consensus 1 ~qn~dGg~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~ 80 (238)
+||+||||+.++.. .+++..|..+|.+|..++... ... +..++++++||+++|+
T Consensus 133 ~Q~~dGGf~g~~~~---------------------~~~i~~T~~Al~aL~~lg~~~-~~~----~i~i~kav~~L~s~Q~ 186 (437)
T 2h6f_B 133 CQSPEGGFGGGPGQ---------------------YPHLAPTYAAVNALCIIGTEE-AYD----IINREKLLQYLYSLKQ 186 (437)
T ss_dssp HBCTTSSBBSSTTC---------------------CBCHHHHHHHHHHHHHHCCHH-HHT----TSCHHHHHHHHHTTBC
T ss_pred hCCCCCCcCCccCC---------------------CcchhHHHHHHHHHHHhCCcc-ccc----chHHHHHHHHHHHhCC
Confidence 59999999987642 123456999999999987420 000 1248899999999999
Q ss_pred cCCCCccc-ccccchhhhHHHHHHHHHccccCccHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcccCCCCCCCCHHHH
Q 026485 81 SDGSWYGS-WGICFTYAAWFAISGLVAAKKTYSNCLAIRKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQT 159 (238)
Q Consensus 81 ~dG~w~~~-~~~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~dGgw~~~~~~~~~~~y~~~~~~~~~~~~T 159 (238)
+||||.+. |++.++..|..++.+|..++.. ..+.++|+++||+++|++||||++.+ +..++...|
T Consensus 187 ~DGsf~~~~~Ge~d~~~ty~A~~~L~llg~~--~~~~v~k~~~~L~s~Q~~DGGwg~~p------------g~eSh~~~T 252 (437)
T 2h6f_B 187 PDGSFLMHVGGEVDVRSAYCAASVASLTNII--TPDLFEGTAEWIARCQNWEGGIGGVP------------GMEAHGGYT 252 (437)
T ss_dssp TTSCBBSSTTCCBSHHHHHHHHHHHHHTTCC--CTTTTTTHHHHHHHHBCTTSSBCSST------------TSCCCHHHH
T ss_pred CCCCeeecCCCCccchhHHHHHHHHHHhCCC--ChHHHHHHHHHHHHccCCCCCcCCCC------------CCCCCccHH
Confidence 99999874 8888888888888888888875 35678999999999999999999753 457889999
Q ss_pred HHHHHHHHHhCCCCCChHHHHHHHHHHHhccc-CCCCCCCCccccccCCccc
Q 026485 160 AWAMMSLIHAGQMERDPTPLHRAAKLLINSQL-EDGDFPQQELTGVFMENCM 210 (238)
Q Consensus 160 a~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~-~dGgw~~~~~~~~~~~~~~ 210 (238)
+|||.+|..++.... ..++++++||+++|. ++|||.... +-.+++||
T Consensus 253 ~~Al~aL~~lg~~~~--~~~~rl~~wL~~rQ~~~~GGf~gRp--~K~~D~cY 300 (437)
T 2h6f_B 253 FCGLAALVILKRERS--LNLKSLLQWVTSRQMRFEGGFQGRC--NKLVDGCY 300 (437)
T ss_dssp HHHHHHHHHHTCGGG--SCHHHHHHHHHHTBCTTTCSBBSST--TSCBCTTH
T ss_pred HHHHHHHHHcCCCCc--ccHHHHHHHHHhcCCCCCCCccCCC--CCccchHH
Confidence 999999999987642 268999999999998 789997543 23445554
No 6
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B*
Probab=99.92 E-value=5.8e-25 Score=190.79 Aligned_cols=163 Identities=26% Similarity=0.346 Sum_probs=130.3
Q ss_pred CCCCCCCcccccCCCCchhhhccCcccccccccccCCCcchHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHhcc
Q 026485 1 MQSETGGVPAWEPTGAPSWLELLNPIEFLDEVIIEYDKVECTASALKAMTLFKKLYPKHRTKEVKNFIAKATKFIEDIQK 80 (238)
Q Consensus 1 ~qn~dGg~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~ 80 (238)
+||+||||+..+.. .+.+..|..+|.+|..++.. + +..++++++||.++|+
T Consensus 78 ~Q~~dGGF~g~~g~---------------------~~~l~~Ty~Al~~L~~l~~~-~-------~id~~k~~~fL~~~Q~ 128 (331)
T 3dss_B 78 CQHECGGVSASIGH---------------------DPHLLYTLSAVQILTLYDSI-H-------VINVDKVVAYVQSLQK 128 (331)
T ss_dssp TBCTTSCBBSSTTS---------------------CBCHHHHHHHHHHHHHTTCG-G-------GSCHHHHHHHHHHTBC
T ss_pred hcCCCCCcCCCCCC---------------------CccHHHHHHHHHHHHHcCCc-c-------HHHHHHHHHHHhccCC
Confidence 59999999965431 23345699999999988532 1 1248899999999999
Q ss_pred cCCCCccc-ccccchhhhHHHHHHHHHccccCccHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcccCCCCCCCCHHHH
Q 026485 81 SDGSWYGS-WGICFTYAAWFAISGLVAAKKTYSNCLAIRKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQT 159 (238)
Q Consensus 81 ~dG~w~~~-~~~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~dGgw~~~~~~~~~~~y~~~~~~~~~~~~T 159 (238)
+||+|.+. |++.++..|..++.+|..++.. ....++|+++||+++|++||||++.+ +.+++...|
T Consensus 129 ~DGsf~~~~~ge~d~~~ty~Al~~L~llg~~--~~~~~~k~v~~L~s~Q~~dGGfg~~p------------g~esh~~~T 194 (331)
T 3dss_B 129 EDGSFAGDIWGEIDTRFSFCAVATLALLGKL--DAINVEKAIEFVLSCMNFDGGFGCRP------------GSESHAGQI 194 (331)
T ss_dssp TTSCBBSSTTCCBCHHHHHHHHHHHHHHTCG--GGSCHHHHHHHHHTTBCTTSCBCSST------------TCCCCHHHH
T ss_pred CCCCEecccCCCCchHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHhCcCCCCcCCCC------------CCCCcHHHH
Confidence 99999864 8888888888899999888875 34568999999999999999999853 456788999
Q ss_pred HHHHHHHHHhCCCCCChHHHHHHHHHHHhcccCCCCCCCCccccccCCccc
Q 026485 160 AWAMMSLIHAGQMERDPTPLHRAAKLLINSQLEDGDFPQQELTGVFMENCM 210 (238)
Q Consensus 160 a~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~~dGgw~~~~~~~~~~~~~~ 210 (238)
++|+.+|..++.... ..++++++||+++|+++|||.... +..++.||
T Consensus 195 ~~al~aL~llg~~~~--~~~~~~~~wL~~~Q~~dGGf~gr~--~k~~D~cy 241 (331)
T 3dss_B 195 YCCTGFLAITSQLHQ--VNSDLLGWWLCERQLPSGGLNGRP--EKLPDVCY 241 (331)
T ss_dssp HHHHHHHHHTTCGGG--SCHHHHHHHHHTTBCTTSCBCSST--TCCCCHHH
T ss_pred HHHHHHHHhccccch--hhHHHHHHHHHHhCCCCCCcCCCC--CCCCcchh
Confidence 999999999887542 258999999999999999998653 23455554
No 7
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B*
Probab=99.92 E-value=1.7e-24 Score=190.32 Aligned_cols=178 Identities=16% Similarity=0.145 Sum_probs=141.0
Q ss_pred CCCCcccccCCCCchhhhccCcccccccccccCCCcchHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHhcccCC
Q 026485 4 ETGGVPAWEPTGAPSWLELLNPIEFLDEVIIEYDKVECTASALKAMTLFKKLYPKHRTKEVKNFIAKATKFIEDIQKSDG 83 (238)
Q Consensus 4 ~dGg~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~~dG 83 (238)
+||||+.|+..+.|. .++.+|.+ +...+++.+.+|..+|.+|..++...+. ...+++++||.+.|++||
T Consensus 91 ~~GGF~g~~~~~~p~-~d~~~~~~---~~~~d~~~v~~T~~Al~~L~~lg~~~~~-------id~~~~~~fL~~~Q~~DG 159 (377)
T 1n4q_B 91 DRCGFRGSSYLGIPF-NPSKNPGT---AHPYDSGHIAMTYTGLSCLIILGDDLSR-------VDKEACLAGLRALQLEDG 159 (377)
T ss_dssp GGCEECSSSTTCCCC-CSSCSCCC---CCTTCCCCHHHHHHHHHHHHHTTCCSTT-------SCHHHHHHHHHHHBCTTS
T ss_pred CCCccCCCcccCCCh-hhhccccc---cccCCCCCHHHHHHHHHHHHHhCcccch-------hhHHHHHHHHHHhcCCCC
Confidence 689999999876554 45555553 5567889999999999999998753221 134789999999999999
Q ss_pred CCcc--cccccchhhhHHHHHHHHHccccCccHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcccCCCCCCCCHHHHHH
Q 026485 84 SWYG--SWGICFTYAAWFAISGLVAAKKTYSNCLAIRKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAW 161 (238)
Q Consensus 84 ~w~~--~~~~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~dGgw~~~~~~~~~~~y~~~~~~~~~~~~Ta~ 161 (238)
||.+ .|++++++.|..++.+|..++.. ..+.++|+++||+++|+.||||++.+ +.+++...|++
T Consensus 160 Sf~g~~~wGe~DirftY~Al~~l~llg~~--~~~~v~ka~~fL~scQn~DGGfGe~p------------~~ESh~g~T~c 225 (377)
T 1n4q_B 160 SFCAVPEGSENDMRFVYCASCICYMLNNW--SGMDMKKAISYIRRSMSYDNGLAQGA------------GLESHGGSTFC 225 (377)
T ss_dssp CBCSSTTCCCCBHHHHHHHHHHHHHTTCG--GGSCHHHHHHHHHHTBCTTSSBBSST------------TSCBCHHHHHH
T ss_pred CeeeccCCCcchhHHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHhcCCCCCCCCCC------------CCCCchhHHHH
Confidence 9987 69999999998898888888874 35668999999999999999999863 34678899999
Q ss_pred HHHHHHHhCCCCCC-h-HHHHHHHHHHHhcccCCCCCCCCccccccCCccc
Q 026485 162 AMMSLIHAGQMERD-P-TPLHRAAKLLINSQLEDGDFPQQELTGVFMENCM 210 (238)
Q Consensus 162 al~aL~~~g~~~~~-~-~~v~~a~~~L~~~Q~~dGgw~~~~~~~~~~~~~~ 210 (238)
|+.+|..++..+.. + ..++++++||+++| +|||.-.. ...++.||
T Consensus 226 AlaaL~llg~~~~~~~~~~~~rli~wL~~rQ--~gGf~GR~--nK~~D~CY 272 (377)
T 1n4q_B 226 GIASLCLMGKLEEVFSEKELNRIKRWCIMRQ--QNGYHGRP--NKPVDTCY 272 (377)
T ss_dssp HHHHHHHHTCHHHHSCHHHHHHHHHHHHTTB--SSSBCSST--TSCCCTTH
T ss_pred HHHHHHHhcCcccccchhhHHHHHHHHHhcC--CCCcCCCC--CcchhHHH
Confidence 99999888764321 1 26899999999999 88887442 22556665
No 8
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4
Probab=99.91 E-value=6.2e-24 Score=187.20 Aligned_cols=186 Identities=21% Similarity=0.285 Sum_probs=134.5
Q ss_pred CCCCCCCcccccCCCCchhhhccCcccccccccccCCCcchHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHhcc
Q 026485 1 MQSETGGVPAWEPTGAPSWLELLNPIEFLDEVIIEYDKVECTASALKAMTLFKKLYPKHRTKEVKNFIAKATKFIEDIQK 80 (238)
Q Consensus 1 ~qn~dGg~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~ 80 (238)
|||+||||+.|+..++..|+ |++|+++|..+++.... .++.++++++||++.|+
T Consensus 103 ~Q~~dGgf~~~~~~~~~~~l---------------------Ta~v~~~l~~a~~~~~v-----~~~~i~~a~~~L~~~Q~ 156 (367)
T 1hzf_A 103 FRKADGSYAAWLSRDSSTWL---------------------TAFVLKVLSLAQEQVGG-----SPEKLQETSNWLLSQQQ 156 (367)
T ss_dssp TBCTTSCBCSSTTSCCCHHH---------------------HHHHHHHHHHHGGGTCC-----CHHHHHHHHHHHGGGBC
T ss_pred ccCCCCCeeccCCCCCcHHH---------------------HHHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHHhhc
Confidence 79999999999887777776 99999999998764221 14789999999999999
Q ss_pred cCCCCcccccc-------------cchhhhHHHHHHHHHccccC----------ccHHHHHHHHHHHHhc--cc------
Q 026485 81 SDGSWYGSWGI-------------CFTYAAWFAISGLVAAKKTY----------SNCLAIRKATDFLLKI--QC------ 129 (238)
Q Consensus 81 ~dG~w~~~~~~-------------~~~~~T~~al~aL~~~g~~~----------~~~~~i~~a~~~L~~~--Q~------ 129 (238)
+||+|.+.+.. ..++.|++++.+|.+.+... ...+.|+||++||.++ ++
T Consensus 157 ~dG~~~~~~~~~~~~~~gg~~~~~~~~~lTA~vl~aL~~~g~~~~~~~~~~~~~~~~~~i~ra~~yL~~~~~~~~~~~y~ 236 (367)
T 1hzf_A 157 ADGSFQDPCPVLDRSMQGGLVGNDETVALTAFVTIALHHGLAVFQDEGAEPLKQRVEASISKASSFLGEKASAGLLGAHA 236 (367)
T ss_dssp TTSCBCCSSCCSCGGGGGGGSSTTHHHHHHHHHHHHHHHHHTTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHH
T ss_pred cCCCcccccccccccccCCCCCCcccccchHHHHHHHHhhhccccccccchhhhhhHHHHHHHHHHHHHhhhcccCCHHH
Confidence 99999765432 12567899999999876421 1346799999999776 21
Q ss_pred ------------------------------cCCC---CCCCCCC----------CCC-CcccCCCCCC-CCHHHHHHHHH
Q 026485 130 ------------------------------EDGG---WGESYRS----------CPN-KKYIPLDGNR-SNLVQTAWAMM 164 (238)
Q Consensus 130 ------------------------------~dGg---w~~~~~~----------~~~-~~y~~~~~~~-~~~~~Ta~al~ 164 (238)
.+|+ |+....+ ... ..+.+ ... .+++.|+|||+
T Consensus 237 ~Al~ayAL~l~~~~~~~~~~~~~~L~~~a~~~~~~~~W~~~~~s~~~~~~~~~~~~~~~~~~~--~~~s~~vE~TAyaLL 314 (367)
T 1hzf_A 237 AAITAYALTLTKAPADLRGVAHNNLMAMAQETGDNLYWGSVTGSQSNAVSPTPAPRNPSDPMP--QAPALWIETTAYALL 314 (367)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHTTCEECSSCEECC--------------------------CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHhhhcCCCCccCCCCCcccccccccccccccccccC--CCccchhHHHHHHHH
Confidence 1333 5432100 000 00111 112 27899999999
Q ss_pred HHHHhCCCCCChHHHHHHHHHHHhcccCCCCCCCCccccccCCccccccCCchhhHHHHHHHHHHHhcc
Q 026485 165 SLIHAGQMERDPTPLHRAAKLLINSQLEDGDFPQQELTGVFMENCMLHYPIYRNIFPMWALAEYRSRLL 233 (238)
Q Consensus 165 aL~~~g~~~~~~~~v~~a~~~L~~~Q~~dGgw~~~~~~~~~~~~~~~~~~~~~~~~~l~aL~~~~~~~~ 233 (238)
+|...+.. .+.+.+.++||+++|+.+|||...+. |+++|+||..|..+..
T Consensus 315 all~~~~~---~~~~~~iv~WL~~qrn~~Ggw~sTqd----------------TvvAL~AL~~y~~~~~ 364 (367)
T 1hzf_A 315 HLLLHEGK---AEMADQASAWLTRQGSFQGGFRSTQD----------------TVIALDALSAYWIASH 364 (367)
T ss_dssp HHHHHTCS---SHHHHHHHHHHHHHTTSTTCSCSHHH----------------HHHHHHHHHHHHHHHC
T ss_pred HHHhccCc---hhhhHHHHHHHHhCcCCCCCcccHHH----------------HHHHHHHHHHHHHHcC
Confidence 99876532 24799999999999999999998763 8999999999987654
No 9
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ...
Probab=99.91 E-value=5.2e-24 Score=190.60 Aligned_cols=174 Identities=15% Similarity=0.184 Sum_probs=133.6
Q ss_pred CCCCCCcccccCCCCchhhhccCcccccccccccCCCcchHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHhccc
Q 026485 2 QSETGGVPAWEPTGAPSWLELLNPIEFLDEVIIEYDKVECTASALKAMTLFKKLYPKHRTKEVKNFIAKATKFIEDIQKS 81 (238)
Q Consensus 2 qn~dGg~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~~ 81 (238)
|+.+|||+.|+..+ .|+ +.++|.+|..++...+ ++.++++++||+++|++
T Consensus 87 q~~~gg~~a~D~~r--~~l---------------------~y~~l~aL~lLg~~~~-------~~~~~r~v~~l~s~Q~~ 136 (437)
T 2h6f_B 87 RQLTDAYECLDASR--PWL---------------------CYWILHSLELLDEPIP-------QIVATDVCQFLELCQSP 136 (437)
T ss_dssp TEECGGGGGGTTCH--HHH---------------------HHHHHHHHHHTTCCCC-------HHHHHHHHHHHHHHBCT
T ss_pred CCCCCCcccccCCC--ccH---------------------HHHHHHHHHHhCCCCC-------HHHHHHHHHHHHHhCCC
Confidence 88999999998764 244 5567888888874211 25789999999999999
Q ss_pred CCCCcc-cccccchhhhHHHHHHHHHccccCc-cHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcccCCCCCCCCHHHH
Q 026485 82 DGSWYG-SWGICFTYAAWFAISGLVAAKKTYS-NCLAIRKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQT 159 (238)
Q Consensus 82 dG~w~~-~~~~~~~~~T~~al~aL~~~g~~~~-~~~~i~~a~~~L~~~Q~~dGgw~~~~~~~~~~~y~~~~~~~~~~~~T 159 (238)
||||.+ .|+..+++.|..+|.+|..+|.... ....++|+++||+++|++||||++.. .+.+++..|
T Consensus 137 dGGf~g~~~~~~~i~~T~~Al~aL~~lg~~~~~~~i~i~kav~~L~s~Q~~DGsf~~~~------------~Ge~d~~~t 204 (437)
T 2h6f_B 137 EGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGSFLMHV------------GGEVDVRSA 204 (437)
T ss_dssp TSSBBSSTTCCBCHHHHHHHHHHHHHHCCHHHHTTSCHHHHHHHHHTTBCTTSCBBSST------------TCCBSHHHH
T ss_pred CCCcCCccCCCcchhHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhCCCCCCeeecC------------CCCccchhH
Confidence 999987 7888899999999999999986410 12348999999999999999998641 346778889
Q ss_pred HHHHHHHHHhCCCCCChHHHHHHHHHHHhcccCCCCCCCCccccccCCccccccCCchhhHHHHHHHHH
Q 026485 160 AWAMMSLIHAGQMERDPTPLHRAAKLLINSQLEDGDFPQQELTGVFMENCMLHYPIYRNIFPMWALAEY 228 (238)
Q Consensus 160 a~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~~dGgw~~~~~~~~~~~~~~~~~~~~~~~~~l~aL~~~ 228 (238)
..|+.+|..++... .+.++|+++||+++|++||||+... +. +.+..-+.++|.||...
T Consensus 205 y~A~~~L~llg~~~--~~~v~k~~~~L~s~Q~~DGGwg~~p--g~-------eSh~~~T~~Al~aL~~l 262 (437)
T 2h6f_B 205 YCAASVASLTNIIT--PDLFEGTAEWIARCQNWEGGIGGVP--GM-------EAHGGYTFCGLAALVIL 262 (437)
T ss_dssp HHHHHHHHHTTCCC--TTTTTTHHHHHHHHBCTTSSBCSST--TS-------CCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCC--hHHHHHHHHHHHHccCCCCCcCCCC--CC-------CCCccHHHHHHHHHHHc
Confidence 88888888887643 2378999999999999999999753 11 11222266777776543
No 10
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*
Probab=99.90 E-value=2.2e-23 Score=197.73 Aligned_cols=152 Identities=21% Similarity=0.330 Sum_probs=118.3
Q ss_pred CCCcchHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHhcccCCCCcc--------------------cccc--cc
Q 026485 36 YDKVECTASALKAMTLFKKLYPKHRTKEVKNFIAKATKFIEDIQKSDGSWYG--------------------SWGI--CF 93 (238)
Q Consensus 36 ~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~~dG~w~~--------------------~~~~--~~ 93 (238)
++++|+||.+|++|..+.+..+....+..++.++++++||+++|++||+|.. .+.. .+
T Consensus 451 ~pd~d~TA~vl~aL~~~~~~~~~~g~~~~~~~i~~av~wLls~Q~~DGgw~a~~~~~~~~~l~~i~~~e~fg~~~~d~s~ 530 (732)
T 1w6k_A 451 WIVSDCTAEALKAVLLLQEKCPHVTEHIPRERLCDAVAVLLNMRNPDGGFATYETKRGGHLLELLNPSEVFGDIMIDYTY 530 (732)
T ss_dssp CBCHHHHHHHHHHHHHHHHHCTTCCSCCCHHHHHHHHHHHHTTCCTTSCBCSSSCCCSCGGGGGGCCCSSCSSCSSCCCB
T ss_pred CCccccHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHHhcCCCCCEEeecCCCchHHHhhCcchhcccccccCCCc
Confidence 5678899999999999876422111111347899999999999999999941 1111 24
Q ss_pred hhhhHHHHHHHHHccccC------ccHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcccCCCCCCCCHHHHHHHHHHHH
Q 026485 94 TYAAWFAISGLVAAKKTY------SNCLAIRKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLI 167 (238)
Q Consensus 94 ~~~T~~al~aL~~~g~~~------~~~~~i~~a~~~L~~~Q~~dGgw~~~~~~~~~~~y~~~~~~~~~~~~Ta~al~aL~ 167 (238)
+..|+.+|.+|..++... ..++.++||++||+++|++||+|.+.++. ...+.|++++.||.
T Consensus 531 v~~Ta~vL~aL~~~~~~~~~~~~~~~~~~i~rAv~yL~~~Q~~DGsW~g~wg~-------------~~~Y~T~~al~AL~ 597 (732)
T 1w6k_A 531 VECTSAVMQALKYFHKRFPEHRAAEIRETLTQGLEFCRRQQRADGSWEGSWGV-------------CFTYGTWFGLEAFA 597 (732)
T ss_dssp HHHHHHHHHHHHHHHHHCTTSSHHHHHHHHHHHHHHHHHHSCTTSCCCCSSBS-------------SHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhccccccccchhhHHHHHHHHHHHHhhcCCCCCccCcCCC-------------ccchHHHHHHHHHH
Confidence 568999999999876421 13578999999999999999999876532 34689999999999
Q ss_pred HhCCCCCCh---HHHHHHHHHHHhcccCCCCCCCCc
Q 026485 168 HAGQMERDP---TPLHRAAKLLINSQLEDGDFPQQE 200 (238)
Q Consensus 168 ~~g~~~~~~---~~v~~a~~~L~~~Q~~dGgw~~~~ 200 (238)
.++....+. +.++|+++||+++|++||||++..
T Consensus 598 ~aG~~~~~~~~~~~i~rav~~Lls~Q~~DGGWge~~ 633 (732)
T 1w6k_A 598 CMGQTYRDGTACAEVSRACDFLLSRQMADGGWGEDF 633 (732)
T ss_dssp HTTCCCBTTBCCHHHHHHHHHHHTTCCTTSCCCBCT
T ss_pred HhCCcccccchhHHHHHHHHHHHHhcccCCCCCCCC
Confidence 998754332 589999999999999999999753
No 11
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B*
Probab=99.88 E-value=5.9e-22 Score=178.36 Aligned_cols=188 Identities=12% Similarity=0.093 Sum_probs=140.0
Q ss_pred CCCCCCCcccccCCCCchhhhccCcccccccccccCCCcchHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHhcc
Q 026485 1 MQSETGGVPAWEPTGAPSWLELLNPIEFLDEVIIEYDKVECTASALKAMTLFKKLYPKHRTKEVKNFIAKATKFIEDIQK 80 (238)
Q Consensus 1 ~qn~dGg~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~ 80 (238)
+||+||||+.++.. .+.+.+.+|..+|.+|..++...|..+.++++..++++++||.+.|+
T Consensus 121 ~Q~~dGGFgg~p~~-------------------~~~~hla~TysAV~aL~ilg~~~p~~~~~~Id~~r~k~v~fL~slQ~ 181 (520)
T 3q7a_B 121 FLSPKGGFGGGPAN-------------------SQIPHLLPTYASVCSLAIAGNDSSTGGWKDLAAARQSIYEFFMRCKR 181 (520)
T ss_dssp TBCTTSSBCSSCTT-------------------TSCCCHHHHHHHHHHHHHHCBSSTTSBHHHHHHTHHHHHHHHHHHBC
T ss_pred HcCCCCCCCCCCCC-------------------CCCCcHHHHHHHHHHHHHhCccccchhhhhhhhHHHHHHHHHHHHhC
Confidence 59999999976632 13456678999999999998765545555565568899999999999
Q ss_pred cCCCCcc-cccccchhhhHHHHHHHHHccccCccHHHHHHHHHHHHhccccCCCCCCCCC----------CCCCCc-ccC
Q 026485 81 SDGSWYG-SWGICFTYAAWFAISGLVAAKKTYSNCLAIRKATDFLLKIQCEDGGWGESYR----------SCPNKK-YIP 148 (238)
Q Consensus 81 ~dG~w~~-~~~~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~dGgw~~~~~----------~~~~~~-y~~ 148 (238)
+||+|.+ .|++.+++.|..++.+|..++.. ..+.++|+++||+++|+.||||++... ....++ ...
T Consensus 182 ~DGSF~g~~wGe~Dir~TY~Al~~L~lLg~~--~~~~v~kav~fI~scQn~DGGfGe~s~~~~~~~~~~~~~~~~rp~~~ 259 (520)
T 3q7a_B 182 PDGGFVVCEGGEVDVRGTYCLLVVATLLDII--TPELLHNVDKFVSACQTYEGGFACASFPFPSVVPSTSAFPTSEPSCR 259 (520)
T ss_dssp TTSCBBSSTTCCBCHHHHHHHHHHHHHHTCC--CHHHHTTHHHHHHTTBCTTSSBCSCEEEEC------------CCSEE
T ss_pred CCCCEecCCCCCchHHHHHHHHHHHHHcCCC--ChHHHHHHHHHHHHhcCCCCCccCccccccccccccccccccccccC
Confidence 9999988 59999999999999999888874 467899999999999999999998200 000000 000
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCC----ChHHHHHHHHHHHhccc---CCCCCCCCccccccCCcccc
Q 026485 149 LDGNRSNLVQTAWAMMSLIHAGQMER----DPTPLHRAAKLLINSQL---EDGDFPQQELTGVFMENCML 211 (238)
Q Consensus 149 ~~~~~~~~~~Ta~al~aL~~~g~~~~----~~~~v~~a~~~L~~~Q~---~dGgw~~~~~~~~~~~~~~~ 211 (238)
.++.++..-.|.+||.+|..++..+. ....+++.++||+.+|. ++|||.-.. .-.++.||-
T Consensus 260 ~Pg~EaHgGyTfCalAaL~lL~~l~~~~~~~~~d~~~l~~WL~~RQ~~~~e~GGF~GR~--NKlvD~CYS 327 (520)
T 3q7a_B 260 VSMAEAHGGYTSCSLNSHFLLTSVPLPSFPLSIDANAALRWTVLQQGEPIEGGGFRGRT--NKLVDGCYS 327 (520)
T ss_dssp EECSCCCHHHHHHHHHHHHHHHTSCCTTCSCCCCHHHHHHHHHHTBCCGGGTTCBBSST--TSCBCTTHH
T ss_pred CCCCccchhHHHHHHHHHHHhccccccccccccCHHHHHHHHHHhCCcccCCCcccCCC--CCCCchhhh
Confidence 02556777889999999988776320 11258899999999996 569997543 236677763
No 12
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B*
Probab=99.86 E-value=2.7e-21 Score=167.75 Aligned_cols=174 Identities=17% Similarity=0.189 Sum_probs=130.1
Q ss_pred CCCCCCCcccccCCCCchhhhccCcccccccccccCCCcchHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHhcc
Q 026485 1 MQSETGGVPAWEPTGAPSWLELLNPIEFLDEVIIEYDKVECTASALKAMTLFKKLYPKHRTKEVKNFIAKATKFIEDIQK 80 (238)
Q Consensus 1 ~qn~dGg~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~ 80 (238)
+|++||||...... .+++..|..++.+|..++... ...++++++||+++|+
T Consensus 126 ~Q~~DGsf~~~~~g---------------------e~d~~~ty~Al~~L~llg~~~--------~~~~~k~v~~L~s~Q~ 176 (331)
T 3dss_B 126 LQKEDGSFAGDIWG---------------------EIDTRFSFCAVATLALLGKLD--------AINVEKAIEFVLSCMN 176 (331)
T ss_dssp TBCTTSCBBSSTTC---------------------CBCHHHHHHHHHHHHHHTCGG--------GSCHHHHHHHHHTTBC
T ss_pred cCCCCCCEecccCC---------------------CCchHHHHHHHHHHHhcCCCC--------HHHHHHHHHHHHHhCc
Confidence 58999999842211 112335888899988887531 1358999999999999
Q ss_pred cCCCCccccc-ccchhhhHHHHHHHHHccccCccHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcccCCCCCCCCHHHH
Q 026485 81 SDGSWYGSWG-ICFTYAAWFAISGLVAAKKTYSNCLAIRKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQT 159 (238)
Q Consensus 81 ~dG~w~~~~~-~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~dGgw~~~~~~~~~~~y~~~~~~~~~~~~T 159 (238)
+||+|.+.++ +.+...|+.++.+|..++... ...++++++||+++|++||||.+.+ +..+++..|
T Consensus 177 ~dGGfg~~pg~esh~~~T~~al~aL~llg~~~--~~~~~~~~~wL~~~Q~~dGGf~gr~------------~k~~D~cys 242 (331)
T 3dss_B 177 FDGGFGCRPGSESHAGQIYCCTGFLAITSQLH--QVNSDLLGWWLCERQLPSGGLNGRP------------EKLPDVCYS 242 (331)
T ss_dssp TTSCBCSSTTCCCCHHHHHHHHHHHHHTTCGG--GSCHHHHHHHHHTTBCTTSCBCSST------------TCCCCHHHH
T ss_pred CCCCcCCCCCCCCcHHHHHHHHHHHHhccccc--hhhHHHHHHHHHHhCCCCCCcCCCC------------CCCCcchhH
Confidence 9999987654 345667888999999988753 2348999999999999999998753 346789999
Q ss_pred HHHHHHHHHhCCCCCChHHHHHHHHHHHhcccCC-CCCCCCccccccCCccccccCCchhhHHHHHHHHH
Q 026485 160 AWAMMSLIHAGQMERDPTPLHRAAKLLINSQLED-GDFPQQELTGVFMENCMLHYPIYRNIFPMWALAEY 228 (238)
Q Consensus 160 a~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~~d-Ggw~~~~~~~~~~~~~~~~~~~~~~~~~l~aL~~~ 228 (238)
.|++.+|...+.... ..++++++||+++|+++ |||+... |..+ ..|-++++|.+|...
T Consensus 243 ~w~l~~L~llg~~~~--~~~~~~~~fil~cQ~~~~GGf~~~p--g~~~-------d~~hT~~~l~~Ls~~ 301 (331)
T 3dss_B 243 WWVLASLKIIGRLHW--IDREKLRSFILACQDEETGGFADRP--GDMV-------DPFHTLFGIAGLSLL 301 (331)
T ss_dssp HHHHHHHHHTTCGGG--SCHHHHHHHHHHTBCTTTCCBCSST--TSCC-------BHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCcch--hhHHHHHHHHHHhcCCCCCCcCCCC--CCCC-------CHHHHHHHHHHHHHc
Confidence 999999999887532 26899999999999987 9998653 2111 222356666666543
No 13
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*
Probab=99.86 E-value=1.2e-20 Score=176.71 Aligned_cols=178 Identities=17% Similarity=0.180 Sum_probs=129.6
Q ss_pred ccccccCCCcchHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHhcccCCCCccc-c-------------------
Q 026485 30 DEVIIEYDKVECTASALKAMTLFKKLYPKHRTKEVKNFIAKATKFIEDIQKSDGSWYGS-W------------------- 89 (238)
Q Consensus 30 ~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~~dG~w~~~-~------------------- 89 (238)
++....++++++||.++++|..++. +. .+..++.+.++++||+++|++||+|... .
T Consensus 366 ~~~~~~~p~v~dTA~al~AL~~~~~--~~--~~~~~~~l~~a~~wLls~Q~~dGgf~~~~~~~~~~~~~~~~F~~~~~~~ 441 (631)
T 2sqc_A 366 QFDNVYYPDVCDTAVVVWALNTLRL--PD--ERRRRDAMTKGFRWIVGMQSSNGGWGAYDVDNTSDLPNHIPFSDFGEVT 441 (631)
T ss_dssp SSSCTTCCBHHHHHHHHHHHTTCCC--SC--HHHHHHHHHHHHHHHHHTCCTTSCBCSSCSSCCCSGGGGSTTCSSSCSS
T ss_pred ccCCCCCCchHHHHHHHHHHHHcCC--Cc--cchhHHHHHHHHHHHHhhcCCCCCCCccCCCCccccccccccccCCccc
Confidence 3444456889999999999998764 21 2224578999999999999999999531 0
Q ss_pred cccchhhhHHHHHHHHHccccCccHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcccCCCCCCCCHHHHHHHHHHHHHh
Q 026485 90 GICFTYAAWFAISGLVAAKKTYSNCLAIRKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHA 169 (238)
Q Consensus 90 ~~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~dGgw~~~~~~~~~~~y~~~~~~~~~~~~Ta~al~aL~~~ 169 (238)
+...+..|+.++.+|..++... ..+.++|+++||+++|++||||.+.+. ...++.|+.++.+|..+
T Consensus 442 d~~~vd~Ta~vl~aL~~~g~~~-~~~~i~rai~~L~~~Q~~DGsw~g~wg-------------~~~~y~Ta~~l~aL~~~ 507 (631)
T 2sqc_A 442 DPPSEDVTAHVLECFGSFGYDD-AWKVIRRAVEYLKREQKPDGSWFGRWG-------------VNYLYGTGAVVSALKAV 507 (631)
T ss_dssp CCCBHHHHHHHHHHHHTTTCCT-TSHHHHHHHHHHHHHCCTTSCCCCSSB-------------SSHHHHHHHHHHHHHHT
T ss_pred CCCCchHHHHHHHHHHhcCCCc-cHHHHHHHHHHHHHhcCCCCCCCCCCC-------------CCchHHHHHHHHHHHHh
Confidence 0123458999999999988643 568899999999999999999965432 23578999999999998
Q ss_pred CCCCCChHHHHHHHHHHHhcccCCCCCCCCccccccCCcccc---ccCCchhhHHHHHHHHH
Q 026485 170 GQMERDPTPLHRAAKLLINSQLEDGDFPQQELTGVFMENCML---HYPIYRNIFPMWALAEY 228 (238)
Q Consensus 170 g~~~~~~~~v~~a~~~L~~~Q~~dGgw~~~~~~~~~~~~~~~---~~~~~~~~~~l~aL~~~ 228 (238)
+... +.+.++|+++||+++|++||||+.... .|....|. .-....|.++|.||...
T Consensus 508 g~~~-~~~~i~rav~~L~s~Q~~DGgWg~~~~--sy~~~~~~~~~~s~v~~Ta~ALlaL~~a 566 (631)
T 2sqc_A 508 GIDT-REPYIQKALDWVEQHQNPDGGWGEDCR--SYEDPAYAGKGASTPSQTAWALMALIAG 566 (631)
T ss_dssp TCCT-TSHHHHHHHHHHHHTCCTTSCCCCCGG--GGTCGGGTTCSSCCHHHHHHHHHHHHHT
T ss_pred CCcc-cHHHHHHHHHHHHHhCcCCCCcCCccc--cccccccCCCCCCCHHHHHHHHHHHHHc
Confidence 8754 335899999999999999999986531 12111111 01222366777777543
No 14
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...
Probab=99.83 E-value=7.6e-20 Score=177.84 Aligned_cols=188 Identities=20% Similarity=0.229 Sum_probs=136.1
Q ss_pred CCCCCCCcccccCCCCchhhhccCcccccccccccCCCcchHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHH-hc
Q 026485 1 MQSETGGVPAWEPTGAPSWLELLNPIEFLDEVIIEYDKVECTASALKAMTLFKKLYPKHRTKEVKNFIAKATKFIED-IQ 79 (238)
Q Consensus 1 ~qn~dGg~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~~a~~~L~~-~Q 79 (238)
||++||||+.|+...++.|| ||+|++.|..+.+... . .+..++++++||.+ .|
T Consensus 311 ~Q~~DGsfs~w~~~~~s~wl---------------------TAyv~~~l~~a~~~~~--v---~~~~i~~al~~L~~~~Q 364 (915)
T 2hr0_B 311 FRQPSSAFAAFVKRAPSTWL---------------------TAYVVKVFSLAVNLIA--I---DSQVLCGAVKWLILEKQ 364 (915)
T ss_dssp GCCTTTCCBSSSSSCBCHHH---------------------HHHHHHHHHTTTTTSC--C---CHHHHHHHHHHHHHHHB
T ss_pred hhcCCCCccccCCCCCccee---------------------hHHHHHHHHHhhhcCC--C---CHHHHHHHHHHHHHhhc
Confidence 69999999999887777777 9999999998864311 1 14789999999995 99
Q ss_pred ccCCCCcccccc--------------cchhhhHHHHHHHHHcccc-----CccHHHHHHHHHHHHhcccc-CCCCCCC--
Q 026485 80 KSDGSWYGSWGI--------------CFTYAAWFAISGLVAAKKT-----YSNCLAIRKATDFLLKIQCE-DGGWGES-- 137 (238)
Q Consensus 80 ~~dG~w~~~~~~--------------~~~~~T~~al~aL~~~g~~-----~~~~~~i~~a~~~L~~~Q~~-dGgw~~~-- 137 (238)
++||+|...+.. .....|++++.+|.+.|.. ....+.+++|++||.+.+.+ ++.|...
T Consensus 365 ~~dG~f~~~~~~~~~~m~gg~~~~~~~~~~ltAyvl~aL~~~g~~~~~~~~~~~~~i~~A~~yL~~~~~~~~~~y~~a~l 444 (915)
T 2hr0_B 365 KPDGVFQEDAPVIHQEMIGGLRNNNEKDMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLEANYMNLQRSYTVAIA 444 (915)
T ss_dssp CTTSCBCCCSCCSSSCCCCSCCCCTTHHHHHHHHHHHHHHHHTTTSTTTCTTHHHHHHHHHHHHHHHGGGCCSHHHHHHH
T ss_pred cCCCccccCccccchhhcCCccCccccccccHHHHHHHHHhcccccccCcccchHHHHHHHHHHHHhhhccCCHHHHHHH
Confidence 999999754431 1245689999999988653 22567899999999998665 1211100
Q ss_pred ----------C-C-------CCCCCcccCCCCC-CCCHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcccCCCCCCC
Q 026485 138 ----------Y-R-------SCPNKKYIPLDGN-RSNLVQTAWAMMSLIHAGQMERDPTPLHRAAKLLINSQLEDGDFPQ 198 (238)
Q Consensus 138 ----------~-~-------~~~~~~y~~~~~~-~~~~~~Ta~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~~dGgw~~ 198 (238)
. . ......|+...+. ..++..|+|||++|...+... .+.+.++||+++|+.+|+|..
T Consensus 445 ayAL~l~g~~a~~~l~~L~~~~~~~~~w~~~~~~~~~ve~TayaLlall~~~~~~----~~~~~v~wL~~qq~~~Ggw~S 520 (915)
T 2hr0_B 445 GYALAQMGRLKGPLLNKFLTTAKDKNRWEDPGKQLYNVEATSYALLALLQLKDFD----FVPPVVRWLNEQRYYGGGYGS 520 (915)
T ss_dssp HHHHHTTTCCCHHHHHHHHHTSBTTTBCCCSSCHHHHHHHHHHHHHHHHHTTCTT----THHHHHHHHHTCCCSSSSCCS
T ss_pred HHHHHHcCChHHHHHHHHHhhccCCCCCCCCCCCccchHHHHHHHHHHHhcCChh----hHHHHHHHHHhcccCCCCccc
Confidence 0 0 0000111110111 126789999999999987632 588899999999999999997
Q ss_pred CccccccCCccccccCCchhhHHHHHHHHHHHhccC
Q 026485 199 QELTGVFMENCMLHYPIYRNIFPMWALAEYRSRLLL 234 (238)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~l~aL~~~~~~~~~ 234 (238)
.+. ++++|+||+.|..+.+.
T Consensus 521 TQd----------------T~~Al~AL~~y~~~~~~ 540 (915)
T 2hr0_B 521 TQA----------------TFMVFQALAQYQKDAPD 540 (915)
T ss_dssp HHH----------------HHHHHHHHHHHHHHCCC
T ss_pred hhh----------------HHHHHHHHHHHHHHcCc
Confidence 652 88999999999987765
No 15
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}
Probab=99.82 E-value=5.2e-20 Score=185.54 Aligned_cols=191 Identities=17% Similarity=0.220 Sum_probs=139.1
Q ss_pred CCCCCCCcccccCC----CCchhhhccCcccccccccccCCCcchHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHH
Q 026485 1 MQSETGGVPAWEPT----GAPSWLELLNPIEFLDEVIIEYDKVECTASALKAMTLFKKLYPKHRTKEVKNFIAKATKFIE 76 (238)
Q Consensus 1 ~qn~dGg~~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~~a~~~L~ 76 (238)
||++||||+.|+.. .++.|| ||+|+++|..+.+.... .+..++++++||+
T Consensus 995 ~q~~dGgf~~f~~~~~~~~~s~wl---------------------TAyv~~~l~~a~~~~~v-----~~~~l~~a~~wL~ 1048 (1451)
T 4acq_A 995 YKHYDGSYSTFGERYGRNQGNTWL---------------------TAFVLKTFAQARAYIFI-----DEAHITQALIWLS 1048 (1451)
T ss_dssp GBCTTSCBCSSTTGGGCCCCCHHH---------------------HHHHHHHHHHHTTTSCC-----CTHHHHHHHHHHH
T ss_pred hcCCCCCeeeccCCCCCCCCchhH---------------------HHHHHHHHHHhhhhccc-----CHHHHHHHHHHHH
Confidence 69999999999753 356666 99999999998753221 1368999999999
Q ss_pred HhcccCCCCcc--ccc--------ccchhhhHHHHHHHHHccccCccHHHHHHHHHHHHhcc------------------
Q 026485 77 DIQKSDGSWYG--SWG--------ICFTYAAWFAISGLVAAKKTYSNCLAIRKATDFLLKIQ------------------ 128 (238)
Q Consensus 77 ~~Q~~dG~w~~--~~~--------~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q------------------ 128 (238)
+.|++||+|.. .|. .+.++.||+++.+|+++|... .++.+++|++||.++.
T Consensus 1049 ~~Q~~dG~f~~~g~~~~~~m~gg~~~~~~lTAyvl~aL~~~g~~~-~~~~i~~A~~~L~~~~~~~~~~~~~~~~y~~All 1127 (1451)
T 4acq_A 1049 QRQKDNGCFRSSGSLLNNAIKGGVEDEVTLSAYITIALLEIPLTV-THPVVRNALFCLESAWKTAQEGDHGSHVYTKALL 1127 (1451)
T ss_dssp HTEETTTEECCCCCCSCGGGCCSCSCHHHHHHHHHHHHHHTTCCT-TCHHHHHHHHHHHHHHHHHTSSCSSSTHHHHHHH
T ss_pred hhcccCCcccccCcccchhhcCCCCCCccchHHHHHHHHHcCCCC-CCHHHHHHHHHHHHhhhhcccccccCChHHHHHH
Confidence 99999999973 331 134678999999999999764 5678999999998651
Q ss_pred ------------c------------cCCC---CCCCCCCCCC--CcccCCCCCCCCHHHHHHHHHHHHHhCCCC--CChH
Q 026485 129 ------------C------------EDGG---WGESYRSCPN--KKYIPLDGNRSNLVQTAWAMMSLIHAGQME--RDPT 177 (238)
Q Consensus 129 ------------~------------~dGg---w~~~~~~~~~--~~y~~~~~~~~~~~~Ta~al~aL~~~g~~~--~~~~ 177 (238)
. .+|+ |+.....+.. ..|++ .....++..|||||++|...+..+ .+.+
T Consensus 1128 AyAlal~g~~~~~~~~l~~L~~~a~~~~~~~~W~~~~~~~~~~~~~~~~-~~~s~~vE~TayaLLall~~~~~~~~~d~~ 1206 (1451)
T 4acq_A 1128 AYAFALAGNQDKRKEVLKSLNEEAVKKDNSVHWERPQKPKAPVGHFYEP-QAPSAEVEMTSYVLLAYLTAQPAPTSEDLT 1206 (1451)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCCBCSSCBCCCCCCCSSSCSSSTTCC-CTTGGGGTHHHHHHHHHHCCSSCCCHHHHH
T ss_pred HHHHHhcCChhHHHHHHHHHHHHhhccCCceecCCCCCCcccccccccc-CCchHHHHHHHHHHHHHhhccccccccchh
Confidence 1 1344 5433211110 01111 112356889999999999876421 1223
Q ss_pred HHHHHHHHHHhcccCCCCCCCCccccccCCccccccCCchhhHHHHHHHHHHHhccCC
Q 026485 178 PLHRAAKLLINSQLEDGDFPQQELTGVFMENCMLHYPIYRNIFPMWALAEYRSRLLLP 235 (238)
Q Consensus 178 ~v~~a~~~L~~~Q~~dGgw~~~~~~~~~~~~~~~~~~~~~~~~~l~aL~~~~~~~~~~ 235 (238)
.+.+.++||.++|+.+|||...+. |+++|+||++|+.+...+
T Consensus 1207 ~a~~iv~WL~~qr~~~Ggf~STQd----------------Tv~aL~ALa~Y~~~~~~~ 1248 (1451)
T 4acq_A 1207 SATNIVKWITKQQNAQGGFSSTQD----------------TVVALHALSKYGAATFTR 1248 (1451)
T ss_dssp HHHTTHHHHTTCCCTTSCCSSHHH----------------HHHHHHHHHHHHHHHCCS
T ss_pred hHHHHHHHHHHcCCCCCCcccHHH----------------HHHHHHHHHHHHHhcCCC
Confidence 678889999999999999998773 899999999999876553
No 16
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1
Probab=99.80 E-value=5.7e-19 Score=154.60 Aligned_cols=163 Identities=13% Similarity=0.141 Sum_probs=111.9
Q ss_pred ccCCCcchHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHhcccCCCCcccccccc------hh---hhHHHHHHH
Q 026485 34 IEYDKVECTASALKAMTLFKKLYPKHRTKEVKNFIAKATKFIEDIQKSDGSWYGSWGICF------TY---AAWFAISGL 104 (238)
Q Consensus 34 ~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~~dG~w~~~~~~~~------~~---~T~~al~aL 104 (238)
..+.+.|.|+.+|++|..+.........+++.+++.|+++||++.|.+||||+..+..+. ++ .|+.+|..|
T Consensus 143 ~~T~DnddTa~vl~aL~rv~~~~t~~~~~~y~~Ai~Rgl~wlL~mQ~~nGGWpqFdpdn~~y~~~IpFnDDvt~rvle~L 222 (408)
T 1r76_A 143 VGTIDNDATVTEIRFLAQVVSQLAPEEAAPYRDAALKGIEYLLASQFPNGGWPQVWPLEGGYHDAITYNDDALVHVAELL 222 (408)
T ss_dssp SSBCGGGTTHHHHHHHHHHHHHSCGGGCHHHHHHHHHHHHHHHHHSCTTSCCBSBSSCCCGGGGSEECGGGHHHHHHHHH
T ss_pred CCCCCCchHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHccCCCCCCcCcCccccccccCCCcCcHHHHHHHHHH
Confidence 345667789999999999765301012355779999999999999999999965332221 11 588899988
Q ss_pred HHcccc------------CccHHHHHHHHHHHHhcccc-CCCCCCCCCCCCCC-cccCC-----CCCCCCHHHHHHHHHH
Q 026485 105 VAAKKT------------YSNCLAIRKATDFLLKIQCE-DGGWGESYRSCPNK-KYIPL-----DGNRSNLVQTAWAMMS 165 (238)
Q Consensus 105 ~~~g~~------------~~~~~~i~~a~~~L~~~Q~~-dGgw~~~~~~~~~~-~y~~~-----~~~~~~~~~Ta~al~a 165 (238)
..++.. ....++++||++||++.|.+ ||+|. .|+..+.- -+.|. +...-....|+.+|+.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~av~Rgi~~Ll~~Qe~~dGsw~-rWg~qY~ygT~~Pa~aRsYE~psLs~~esa~il~~ 301 (408)
T 1r76_A 223 SDIAAGRDGFGFVPPAIRTRALEATNAAIHCIVETQVVQDGKRL-GWGQQHDALTLRPTSARNFEPAALSSTESARILLF 301 (408)
T ss_dssp HHHHHTCTTCTTSCHHHHHHHHHHHHHHHHHHHHHSCEETTEEC-CCCSEECTTTCSBCCCSTTCCSCEEHHHHHHHHHH
T ss_pred HHHHhccCcccccchhhhhhHHHHHHHHHHHHHHhhcccCCccc-chhcccccccCcchhhhccCCccccHHHHHHHHHH
Confidence 877651 12468999999999999999 99998 76652110 01110 0012246688888888
Q ss_pred HHHhCCCCC-ChHHHHHHHHHHHhcccCCCCCC
Q 026485 166 LIHAGQMER-DPTPLHRAAKLLINSQLEDGDFP 197 (238)
Q Consensus 166 L~~~g~~~~-~~~~v~~a~~~L~~~Q~~dGgw~ 197 (238)
|........ ..++|++|++||.++|++||+|.
T Consensus 302 LM~~~~~~~~~~~aI~~Av~WL~s~Q~~dg~w~ 334 (408)
T 1r76_A 302 LMEIEAPSDAVKQAIRGGVAWLNTSVIRDRAWV 334 (408)
T ss_dssp HTTSSSCCHHHHHHHHHHHHHHHHSCCCC----
T ss_pred HccCCCCCHHHHHHHHHHHHHHHHhhcCCCcee
Confidence 887765321 12489999999999999999987
No 17
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}
Probab=99.78 E-value=6.9e-19 Score=176.90 Aligned_cols=185 Identities=17% Similarity=0.233 Sum_probs=138.7
Q ss_pred CCCCCCCcccccCCCCchhhhccCcccccccccccCCCcchHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHhcc
Q 026485 1 MQSETGGVPAWEPTGAPSWLELLNPIEFLDEVIIEYDKVECTASALKAMTLFKKLYPKHRTKEVKNFIAKATKFIEDIQK 80 (238)
Q Consensus 1 ~qn~dGg~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~ 80 (238)
||++||||+.|+..+++.|| ||+|+++|..+.+..... .++.++++++||.+.|+
T Consensus 884 ~q~~dGgf~~f~~~~~s~~l---------------------Ta~v~~~l~~a~~~~~~v----~~~~l~~a~~~L~~~q~ 938 (1325)
T 2pn5_A 884 YRQTDGSFGLWETTNGSVFL---------------------TAFVGTSMQTAVKYISDI----DAAMVEKALDWLASKQH 938 (1325)
T ss_dssp GBCTTSCBCSSSSSCCCHHH---------------------HHHHHHHHHHHTTTCSCS----CHHHHHHHHHHHHHTCC
T ss_pred cCCCCCCeeccCCCCCCeee---------------------hHHHHHHHHHHHhhEEcC----CHHHHHHHHHHHHhhhc
Confidence 69999999999887777776 999999999986531111 13689999999999999
Q ss_pred cCCCCcccccc----------cchhhhHHHHHHHHHccccC-ccHHHHHHHHHHHHhcccc-CCCCCCCCCCC-------
Q 026485 81 SDGSWYGSWGI----------CFTYAAWFAISGLVAAKKTY-SNCLAIRKATDFLLKIQCE-DGGWGESYRSC------- 141 (238)
Q Consensus 81 ~dG~w~~~~~~----------~~~~~T~~al~aL~~~g~~~-~~~~~i~~a~~~L~~~Q~~-dGgw~~~~~~~------- 141 (238)
+||+|.+.|.. .....|++++.+|...+... .....+++|++||.++|+. +++|+.....+
T Consensus 939 ~dG~f~~~~~~~~~~~~g~~~~~~~~tayvl~aL~~~g~~~~~~~~~i~~a~~~L~~~~~~~~~~~~~a~~ayaL~l~g~ 1018 (1325)
T 2pn5_A 939 FSGRFDKAGAEYHKEMQGGLRNGVALTSYVLMALLENDIAKAKHAEVIQKGMTYLSNQFGSINNAYDLSIATYAMMLNGH 1018 (1325)
T ss_dssp TTSCCCCCSCCSCHHHHCCSSTTHHHHHHHHHHHHTCHHHHHHTHHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHTC
T ss_pred cCCCccccccccChhhcCcccCCccccHHHHHHHhhCcccccccHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHhcCC
Confidence 99999765431 12345789999998877542 1346789999999998877 77775321100
Q ss_pred -----------------C--CCcccCCCCCCCCHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcccCCCCCCCCccc
Q 026485 142 -----------------P--NKKYIPLDGNRSNLVQTAWAMMSLIHAGQMERDPTPLHRAAKLLINSQLEDGDFPQQELT 202 (238)
Q Consensus 142 -----------------~--~~~y~~~~~~~~~~~~Ta~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~~dGgw~~~~~~ 202 (238)
. ...|+ ...+++..|||||++|...+. .+.+.+.++||+++|+.+|+|...+.
T Consensus 1019 ~~~~~~l~~L~~~~~~~~~~~~~~w---~~~s~ve~tA~aLlall~~~~----~~~~~~~v~wL~~q~~~~g~w~sTq~- 1090 (1325)
T 2pn5_A 1019 TMKEEALNKLIDMSFIDADKNERFW---NTTNPIETTAYALLSFVMAEK----YTDGIPVMNWLVNQRYVTGSFPSTQD- 1090 (1325)
T ss_dssp TTHHHHHHHHHHTCEEETTTTEEEC---CSSSHHHHHHHHHHHHHHTTC----HHHHHHHHHHHHTTCCTTSSCSSHHH-
T ss_pred chHHHHHHHHHhhhhhccCCCcccC---CCCCchHHHHHHHHHHhhhcc----chhhHHHHHHHHhccCCCCCccchHH-
Confidence 0 01121 124578899999999998754 23788999999999999999997763
Q ss_pred cccCCccccccCCchhhHHHHHHHHHHHhcc
Q 026485 203 GVFMENCMLHYPIYRNIFPMWALAEYRSRLL 233 (238)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~l~aL~~~~~~~~ 233 (238)
++++|+||++|..+..
T Consensus 1091 ---------------T~~aL~AL~~y~~~~~ 1106 (1325)
T 2pn5_A 1091 ---------------TFVGLKALTKMAEKIS 1106 (1325)
T ss_dssp ---------------HHHHHHHHHHHHHHHS
T ss_pred ---------------HHHHHHHHHHHHHHcC
Confidence 7899999999988764
No 18
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B*
Probab=99.70 E-value=2.4e-16 Score=142.03 Aligned_cols=143 Identities=15% Similarity=0.203 Sum_probs=113.7
Q ss_pred cCCCcchHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHhcccCCCCcccc---cccchhhhHHHHHHHHHccccC
Q 026485 35 EYDKVECTASALKAMTLFKKLYPKHRTKEVKNFIAKATKFIEDIQKSDGSWYGSW---GICFTYAAWFAISGLVAAKKTY 111 (238)
Q Consensus 35 ~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~~dG~w~~~~---~~~~~~~T~~al~aL~~~g~~~ 111 (238)
|.+.+-...++|.+|..++...+ ....+++++||+++|++||||.+.. ...++..|..+|.+|+.++...
T Consensus 85 Dasr~wl~Yw~l~aL~LLg~~ld-------~~~~~~~I~~Ils~Q~~dGGFgg~p~~~~~~hla~TysAV~aL~ilg~~~ 157 (520)
T 3q7a_B 85 DASRPWLVFWTVHSLDLLGVALD-------QGTKDRVVSTLLHFLSPKGGFGGGPANSQIPHLLPTYASVCSLAIAGNDS 157 (520)
T ss_dssp GGGHHHHHHHHHHHHHHHTCCCC-------HHHHHHHHHHHHTTBCTTSSBCSSCTTTSCCCHHHHHHHHHHHHHHCBSS
T ss_pred ccchHHHHHHHHHHHHHhCCCCC-------hHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhCccc
Confidence 44555678889999999873211 2457889999999999999996543 3456779999999999998752
Q ss_pred c---cH-HH--HHHHHHHHHhccccCCCCCCCCCCCCCCcccCCCCCCCCHHHHHHHHHHHHHhCCCCCChHHHHHHHHH
Q 026485 112 S---NC-LA--IRKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMERDPTPLHRAAKL 185 (238)
Q Consensus 112 ~---~~-~~--i~~a~~~L~~~Q~~dGgw~~~~~~~~~~~y~~~~~~~~~~~~Ta~al~aL~~~g~~~~~~~~v~~a~~~ 185 (238)
+ .+ .. ++++++||.++|++||+|... ..+..++..|.+|+.+|..++.. +++.++++++|
T Consensus 158 p~~~~~~Id~~r~k~v~fL~slQ~~DGSF~g~------------~wGe~Dir~TY~Al~~L~lLg~~--~~~~v~kav~f 223 (520)
T 3q7a_B 158 STGGWKDLAAARQSIYEFFMRCKRPDGGFVVC------------EGGEVDVRGTYCLLVVATLLDII--TPELLHNVDKF 223 (520)
T ss_dssp TTSBHHHHHHTHHHHHHHHHHHBCTTSCBBSS------------TTCCBCHHHHHHHHHHHHHHTCC--CHHHHTTHHHH
T ss_pred cchhhhhhhhHHHHHHHHHHHHhCCCCCEecC------------CCCCchHHHHHHHHHHHHHcCCC--ChHHHHHHHHH
Confidence 1 11 22 678999999999999999753 13467899999999999888873 44689999999
Q ss_pred HHhcccCCCCCCC
Q 026485 186 LINSQLEDGDFPQ 198 (238)
Q Consensus 186 L~~~Q~~dGgw~~ 198 (238)
|+++|+.||||+.
T Consensus 224 I~scQn~DGGfGe 236 (520)
T 3q7a_B 224 VSACQTYEGGFAC 236 (520)
T ss_dssp HHTTBCTTSSBCS
T ss_pred HHHhcCCCCCccC
Confidence 9999999999998
No 19
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B*
Probab=99.68 E-value=8.9e-17 Score=141.27 Aligned_cols=144 Identities=15% Similarity=0.122 Sum_probs=112.3
Q ss_pred cCCCcchHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHhcc---------cCCCCccccc---------------
Q 026485 35 EYDKVECTASALKAMTLFKKLYPKHRTKEVKNFIAKATKFIEDIQK---------SDGSWYGSWG--------------- 90 (238)
Q Consensus 35 ~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~---------~dG~w~~~~~--------------- 90 (238)
|.+.+-.+.++|.+|..++...+ + .++++++||.++|+ ++|||.+...
T Consensus 44 d~~r~~~~yw~l~~L~lLg~l~~------~--~~~~~i~wils~Q~~p~~~~~~~~~GGF~g~~~~~~p~~d~~~~~~~~ 115 (377)
T 1n4q_B 44 ETSRLTIAFFALSGLDMLDSLDV------V--NKDDIIEWIYSLQVLPTEDRSNLDRCGFRGSSYLGIPFNPSKNPGTAH 115 (377)
T ss_dssp GGGHHHHHHHHHHHHHHTTCGGG------S--CHHHHHHHHHTTEECCCTTCTTGGGCEECSSSTTCCCCCSSCSCCCCC
T ss_pred ccchHHHHHHHHHHHHHhCCCCc------c--CHHHHHHHHHHhcCCccccccCCCCCccCCCcccCCChhhhccccccc
Confidence 55556678999999999985311 1 27899999999999 7999964221
Q ss_pred ---ccchhhhHHHHHHHHHccccCccHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcccCCCCCCCCHHHHHHHHHHHH
Q 026485 91 ---ICFTYAAWFAISGLVAAKKTYSNCLAIRKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLI 167 (238)
Q Consensus 91 ---~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~dGgw~~~~~~~~~~~y~~~~~~~~~~~~Ta~al~aL~ 167 (238)
..++..|..+|.+|..++... .....+++++||.+.|++||+|.+.. ..+..++..|..|+.+|.
T Consensus 116 ~~d~~~v~~T~~Al~~L~~lg~~~-~~id~~~~~~fL~~~Q~~DGSf~g~~-----------~wGe~DirftY~Al~~l~ 183 (377)
T 1n4q_B 116 PYDSGHIAMTYTGLSCLIILGDDL-SRVDKEACLAGLRALQLEDGSFCAVP-----------EGSENDMRFVYCASCICY 183 (377)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCCS-TTSCHHHHHHHHHHHBCTTSCBCSST-----------TCCCCBHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHhCccc-chhhHHHHHHHHHHhcCCCCCeeecc-----------CCCcchhHHHHHHHHHHH
Confidence 245678999999999998653 22335899999999999999997631 134678899999999988
Q ss_pred HhCCCCCChHHHHHHHHHHHhcccCCCCCCCCc
Q 026485 168 HAGQMERDPTPLHRAAKLLINSQLEDGDFPQQE 200 (238)
Q Consensus 168 ~~g~~~~~~~~v~~a~~~L~~~Q~~dGgw~~~~ 200 (238)
.++... .+.++++++||+++|++||||++..
T Consensus 184 llg~~~--~~~v~ka~~fL~scQn~DGGfGe~p 214 (377)
T 1n4q_B 184 MLNNWS--GMDMKKAISYIRRSMSYDNGLAQGA 214 (377)
T ss_dssp HTTCGG--GSCHHHHHHHHHHTBCTTSSBBSST
T ss_pred HhcCCC--hHHHHHHHHHHHHhcCCCCCCCCCC
Confidence 887632 2379999999999999999999763
No 20
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*
Probab=99.68 E-value=1.3e-16 Score=136.11 Aligned_cols=177 Identities=16% Similarity=0.137 Sum_probs=111.9
Q ss_pred CCCCCCCcccccCCCCchhhhccCcccccccccccCCCcchHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHhcc
Q 026485 1 MQSETGGVPAWEPTGAPSWLELLNPIEFLDEVIIEYDKVECTASALKAMTLFKKLYPKHRTKEVKNFIAKATKFIEDIQK 80 (238)
Q Consensus 1 ~qn~dGg~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~ 80 (238)
.|+++|||+-.-. + +...... ......+.+.|.|+.+|++|..+... ...+++.+++.||++||++.|.
T Consensus 43 ~Q~~~GGW~kn~d-----~-~~~~~~~--~~~~~~t~DnddTa~vl~~Larv~~~---~~~~~y~~Ai~Rgl~wlL~mQ~ 111 (332)
T 1gxm_A 43 YQQNNGGWPKNLD-----Y-NSVGNGG--GGNESGTIDNGATITEMVFLAEVYKS---GGNTKYRDAVRKAANFLVNSQY 111 (332)
T ss_dssp TCCTTSCCCSCCC-----T-TTCCCCC--CCCSCEECGGGTTHHHHHHHHHHHHH---HCCHHHHHHHHHHHHHHHHHCC
T ss_pred cCcCCCCCCccee-----c-ccccccC--CCCCCCCccCccHHHHHHHHHHHhcc---ccchHHHHHHHHHHHHHHhccC
Confidence 4999999994211 1 1000000 11233456678899999999987653 1234577999999999999999
Q ss_pred cCCCCccccccc------chh---hhHHHHHHHHHccc----c----------CccHHHHHHHHHHHHhccccCCCCCCC
Q 026485 81 SDGSWYGSWGIC------FTY---AAWFAISGLVAAKK----T----------YSNCLAIRKATDFLLKIQCEDGGWGES 137 (238)
Q Consensus 81 ~dG~w~~~~~~~------~~~---~T~~al~aL~~~g~----~----------~~~~~~i~~a~~~L~~~Q~~dGgw~~~ 137 (238)
+||||+..+-.. .++ .|+.+|..|..++. . ....++++||++||++.|.++|||...
T Consensus 112 ~nGGWpqFdpd~~~Yl~~IpFnDDvtarvLelL~~~~~~~~~~~~~~~~~~~~~~~~~av~Rgid~Llk~Qe~dggw~g~ 191 (332)
T 1gxm_A 112 STGALPQFYPLKGGYSDHATFNDNGMAYALTVLDFAANKRAPFDTDVFSDNDRTRFKTAVTKGTDYILKAQWKQNGVLTV 191 (332)
T ss_dssp TTSCCBSEESCCSGGGGSEECGGGHHHHHHHHHHHHHTTCTTSCSTTSCHHHHHHHHHHHHHHHHHHHHHSCEETTEECC
T ss_pred CCCCccccCCCcccccccCCcchHHHHHHHHHHHHHHhccCCccccccccchhhhhHHHHHHHHHHHHHhhCccCCCcCe
Confidence 999997533211 122 58899999988753 1 124588999999999999999999888
Q ss_pred CCCCCCC-cccCCCCC---CCC--HHHHHHHHHHHHHhCCCCCCh---HHHHHHHHHHHhccc
Q 026485 138 YRSCPNK-KYIPLDGN---RSN--LVQTAWAMMSLIHAGQMERDP---TPLHRAAKLLINSQL 191 (238)
Q Consensus 138 ~~~~~~~-~y~~~~~~---~~~--~~~Ta~al~aL~~~g~~~~~~---~~v~~a~~~L~~~Q~ 191 (238)
|...+.. -+.|.... .+. ...++-.+..|..... ++ .+|++|++||.++|+
T Consensus 192 Wg~qydygT~~Pa~ARayE~psL~~~es~giv~~LM~~~~---~~~v~~aI~~Av~WL~~~q~ 251 (332)
T 1gxm_A 192 WCAQHGALDYQPKKARAYELESLSGSESVGVLAFLMTQPQ---TAEIEQAVRAGVAWFNSPRT 251 (332)
T ss_dssp CCSEECTTTCCBCCCSTTCCSSEETTTHHHHHHHHTTSCC---CHHHHHHHHHHHHHHTCTTT
T ss_pred eccccccccccccccccccccchhHHHHHHHHHHhccCCC---CHHHHHHHHHHHHHHHhccc
Confidence 7653211 01110000 011 1122223333333222 22 379999999999999
No 21
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1
Probab=99.68 E-value=5.8e-17 Score=141.92 Aligned_cols=121 Identities=16% Similarity=0.137 Sum_probs=88.7
Q ss_pred CCCCCCCcccccCCCCchhhhccCcccccccccccCCCcchHHHHHHHHHHHHhhCC--Ccc----hHHHHHHHHHHHHH
Q 026485 1 MQSETGGVPAWEPTGAPSWLELLNPIEFLDEVIIEYDKVECTASALKAMTLFKKLYP--KHR----TKEVKNFIAKATKF 74 (238)
Q Consensus 1 ~qn~dGg~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~--~~~----~~~~~~~i~~a~~~ 74 (238)
||++||||+.|++.+ ..++++|+.. | |+|+++|++|..++.... .+. .++..++++|+++|
T Consensus 187 mQ~~nGGWpqFdpdn-~~y~~~IpFn----D--------Dvt~rvle~L~~~~~~~~~~~~~~~~~~~~~~~av~Rgi~~ 253 (408)
T 1r76_A 187 SQFPNGGWPQVWPLE-GGYHDAITYN----D--------DALVHVAELLSDIAAGRDGFGFVPPAIRTRALEATNAAIHC 253 (408)
T ss_dssp HSCTTSCCBSBSSCC-CGGGGSEECG----G--------GHHHHHHHHHHHHHHTCTTCTTSCHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCcCcCccc-cccccCCCcC----c--------HHHHHHHHHHHHHHhccCcccccchhhhhhHHHHHHHHHHH
Confidence 799999999999987 5899888633 2 899999999999876211 111 12456899999999
Q ss_pred HHHhccc-CCCCcccccccchhhhHH-------------------HHHHHHHccccC-ccHHHHHHHHHHHHhccccCCC
Q 026485 75 IEDIQKS-DGSWYGSWGICFTYAAWF-------------------AISGLVAAKKTY-SNCLAIRKATDFLLKIQCEDGG 133 (238)
Q Consensus 75 L~~~Q~~-dG~w~~~~~~~~~~~T~~-------------------al~aL~~~g~~~-~~~~~i~~a~~~L~~~Q~~dGg 133 (238)
|++.|.+ ||+|+ .|+.++.|+|.. +|..|....... ...++|++|++||.++|++||+
T Consensus 254 Ll~~Qe~~dGsw~-rWg~qY~ygT~~Pa~aRsYE~psLs~~esa~il~~LM~~~~~~~~~~~aI~~Av~WL~s~Q~~dg~ 332 (408)
T 1r76_A 254 IVETQVVQDGKRL-GWGQQHDALTLRPTSARNFEPAALSSTESARILLFLMEIEAPSDAVKQAIRGGVAWLNTSVIRDRA 332 (408)
T ss_dssp HHHHSCEETTEEC-CCCSEECTTTCSBCCCSTTCCSCEEHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHSCCCC--
T ss_pred HHHhhcccCCccc-chhcccccccCcchhhhccCCccccHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHhhcCCCc
Confidence 9999999 99998 999888876543 333333333221 1346899999999999999999
Q ss_pred CC
Q 026485 134 WG 135 (238)
Q Consensus 134 w~ 135 (238)
|.
T Consensus 333 w~ 334 (408)
T 1r76_A 333 WV 334 (408)
T ss_dssp --
T ss_pred ee
Confidence 96
No 22
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*
Probab=99.67 E-value=1.9e-15 Score=144.61 Aligned_cols=189 Identities=20% Similarity=0.264 Sum_probs=129.0
Q ss_pred CCCCCCCcccccCCCCchhhhccCcccccccccccCCCcchHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHhcc
Q 026485 1 MQSETGGVPAWEPTGAPSWLELLNPIEFLDEVIIEYDKVECTASALKAMTLFKKLYPKHRTKEVKNFIAKATKFIEDIQK 80 (238)
Q Consensus 1 ~qn~dGg~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~ 80 (238)
+|++||||+.|....++.|| ||+|++.|..+.+.. .. .+..+.++++||.++|+
T Consensus 380 ~q~~DGsfs~w~~~~~s~wL---------------------TAyV~~~l~~A~~~i--~i---d~~~i~~a~~wL~~~Q~ 433 (767)
T 4fxk_B 380 FRKADGSYAAWLSRDSSTWL---------------------TAFVLKVLSLAQEQV--GG---SPEKLQETSNWLLSQQQ 433 (767)
T ss_dssp TBCTTSCBBSSSSSCBCHHH---------------------HHHHHHHHHHTCSSS--SC---CHHHHHHHHHHHHHTBC
T ss_pred hhcCCCCcccCCCCCCCchh---------------------HHHHHHHHHHHHhhc--Cc---chHHHHHHHHHHHHhhh
Confidence 69999999999888888888 999999999986532 11 13689999999999999
Q ss_pred cCCCCcccc--------c-----ccchhhhHHHHHHHHHccccC----------ccHHHHHHHHHHHHhccc--------
Q 026485 81 SDGSWYGSW--------G-----ICFTYAAWFAISGLVAAKKTY----------SNCLAIRKATDFLLKIQC-------- 129 (238)
Q Consensus 81 ~dG~w~~~~--------~-----~~~~~~T~~al~aL~~~g~~~----------~~~~~i~~a~~~L~~~Q~-------- 129 (238)
+||+|...- + ......||+++.+|++.+... .....+.||++||.+...
T Consensus 434 ~~G~f~e~g~~~~~~~~gg~~~~~~~~~ltAyvliaL~e~~~~~~~~~~~~~~~~~~~~i~ka~~~L~~~~~~~~~~~y~ 513 (767)
T 4fxk_B 434 ADGSFQDPCPVLDRSMQGGLVGNDETVALTAFVTIALHHGLAVFQDEGAEPLKQRVEASISKANSFLGEKASAGLLGAHA 513 (767)
T ss_dssp TTSCBCCSSCSCCCCCCSSTTTHHHHHHHHHHHHHHHHHHHTTSTTCCCCSHHHHHHHHHHHHHHHHHHHTTSCCCCHHH
T ss_pred hcccchhcchhcchhhcCCcCCCccchhHHHHHHHHHHhcCCccccchhhhhHhHHHHHHHHHHHHHHHHhhcccCCHHH
Confidence 999995310 0 112457899999998765421 123457778877754321
Q ss_pred --------------------------------cCCC-CCCCCCCCC-----------CCcccCCCCCCCCHHHHHHHHHH
Q 026485 130 --------------------------------EDGG-WGESYRSCP-----------NKKYIPLDGNRSNLVQTAWAMMS 165 (238)
Q Consensus 130 --------------------------------~dGg-w~~~~~~~~-----------~~~y~~~~~~~~~~~~Ta~al~a 165 (238)
.++. |........ ...+.+ .....++..|||||++
T Consensus 514 ~Al~ayaL~l~~~~~~~~~~~~~~L~~~a~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~VEttayaLla 592 (767)
T 4fxk_B 514 AAITAYALSLTKAPVDLLGVAHNNLMAMAQETGDNLYWGSVTGSQSNAVSPTPAPRNPSDPMP-QAPALWIETTAYALLH 592 (767)
T ss_dssp HHHHHHHHHHHTCTTHHHHHHHHHHHTTCCBCSSCBCCCCCCCCCGGGGCCSSSCCCSSSCBC-CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHhhcEEcCCeeEEeccCCCccccccccccccccccccc-ccchHHHHHHHHHHHH
Confidence 1111 211100000 000000 0011247899999999
Q ss_pred HHHhCCCCCChHHHHHHHHHHHhcccCCCCCCCCccccccCCccccccCCchhhHHHHHHHHHHHhccCC
Q 026485 166 LIHAGQMERDPTPLHRAAKLLINSQLEDGDFPQQELTGVFMENCMLHYPIYRNIFPMWALAEYRSRLLLP 235 (238)
Q Consensus 166 L~~~g~~~~~~~~v~~a~~~L~~~Q~~dGgw~~~~~~~~~~~~~~~~~~~~~~~~~l~aL~~~~~~~~~~ 235 (238)
+...... .+.+.+.++||+.+|+.+|||...+. ++++|+||..|..+....
T Consensus 593 ~l~~~~~---~~~a~~iv~WL~~Qr~~~Ggf~STQd----------------Tv~AL~ALa~y~~~~~~~ 643 (767)
T 4fxk_B 593 LLLHEGK---AEMADQASAWLTRQGSFQGGFRSTQD----------------TVIALDALSAYWIASHTT 643 (767)
T ss_dssp HHHHTSS---CHHHHHHHHHHHHTCCTTSSCSSHHH----------------HHHHHHHHHHHHHHTCCC
T ss_pred HHhcCCc---hhHHHHHHHHHHHhhcCCCCCcCHHH----------------HHHHHHHHHHHHHhcccC
Confidence 8876442 23688899999999999999998763 899999999998776543
No 23
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*
Probab=99.63 E-value=2e-17 Score=167.78 Aligned_cols=189 Identities=20% Similarity=0.288 Sum_probs=0.0
Q ss_pred CCCCCCCcccccCCCCchhhhccCcccccccccccCCCcchHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHH-hc
Q 026485 1 MQSETGGVPAWEPTGAPSWLELLNPIEFLDEVIIEYDKVECTASALKAMTLFKKLYPKHRTKEVKNFIAKATKFIED-IQ 79 (238)
Q Consensus 1 ~qn~dGg~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~~a~~~L~~-~Q 79 (238)
+|++||||+.|..+.++.|| ||+|++.|..+.+.... . -+..+.++++||.+ +|
T Consensus 1042 yq~~DGsfs~w~~~~~stWL---------------------TAyV~k~f~~A~~~i~~-V---d~~~l~~~~~wL~~~~Q 1096 (1642)
T 3prx_B 1042 YKKADHSYAAFTNRASSSWL---------------------TAYVVKVFAMAAKMVAG-I---SHEIICGGVRWLILNRQ 1096 (1642)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hcCCCCCeecCCCCCCcccc---------------------HHHHHHHHHHHHhhccC-C---CHHHHHHHHHHHHhhcc
Confidence 68999999999877788898 99999999998753110 1 13789999999998 89
Q ss_pred ccCCCCcccc--------c-----ccchhhhHHHHHHHHHccccC-----ccHHHHHHHHHHHHhcccc-CCCCCC----
Q 026485 80 KSDGSWYGSW--------G-----ICFTYAAWFAISGLVAAKKTY-----SNCLAIRKATDFLLKIQCE-DGGWGE---- 136 (238)
Q Consensus 80 ~~dG~w~~~~--------~-----~~~~~~T~~al~aL~~~g~~~-----~~~~~i~~a~~~L~~~Q~~-dGgw~~---- 136 (238)
++||+|.... | ...+..||+++.||.+.+... ....+++||++||.+.-.. ...+.-
T Consensus 1097 ~~dG~F~e~~~v~~~~m~Gg~~~~~~~~~lTA~vliaL~e~~~~~~~~~~~~~~~i~~a~~~L~~~~~~~~~~Y~~Ai~a 1176 (1642)
T 3prx_B 1097 QPDGAFKENAPVLSGTMQGGIQGAEEEVYLTAFILVALLESKTICNDYVNSLDSSIKKATNYLLKKYEKLQRPYTTALTA 1176 (1642)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCcccccccccchhccCCccCCCCcccchHHHHHHHHhcccccccccccchHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 9999995311 1 124567999999999987531 1356899999999865211 000000
Q ss_pred ----------CCC----CCCCCcccCCCC-CCCCHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcccCCCCCCCCcc
Q 026485 137 ----------SYR----SCPNKKYIPLDG-NRSNLVQTAWAMMSLIHAGQMERDPTPLHRAAKLLINSQLEDGDFPQQEL 201 (238)
Q Consensus 137 ----------~~~----~~~~~~y~~~~~-~~~~~~~Ta~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~~dGgw~~~~~ 201 (238)
... ...+..|+..++ ...++..|||||++++..+.. ....+.++||.++|+..|||...+.
T Consensus 1177 YAl~l~~~~~~~~l~~l~~~~~~~W~~~~~~~~~VE~TaYaLLa~l~~~~~----~~a~~iv~WL~~qr~~~Ggf~STQd 1252 (1642)
T 3prx_B 1177 YALAAADQLNDDRVLMAASTGRDHWEEYNAHTHNIEGTSYALLALLKMKKF----DQTGPIVRWLTDQNFYGETYGQTQA 1252 (1642)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhcCCchHHHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccCch----hhHHHHHHHHHHhccCCCcccCcHH
Confidence 000 000112222111 134789999999999986543 2567789999999999999998763
Q ss_pred ccccCCccccccCCchhhHHHHHHHHHHHhccC
Q 026485 202 TGVFMENCMLHYPIYRNIFPMWALAEYRSRLLL 234 (238)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~l~aL~~~~~~~~~ 234 (238)
|+++|+||++|+.+...
T Consensus 1253 ----------------TvvaLqALa~Y~~~~~~ 1269 (1642)
T 3prx_B 1253 ----------------TVMAFQALAEYEIQMPT 1269 (1642)
T ss_dssp ---------------------------------
T ss_pred ----------------HHHHHHHHHHHHHhcCc
Confidence 88999999999987654
No 24
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4
Probab=99.61 E-value=7.8e-15 Score=129.04 Aligned_cols=127 Identities=20% Similarity=0.295 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCcccccc--cchhhhHHHHHHHHHccccCc-cHHHHHHHHHHHHhccccCCCCCCCC
Q 026485 62 KEVKNFIAKATKFIEDIQKSDGSWYGSWGI--CFTYAAWFAISGLVAAKKTYS-NCLAIRKATDFLLKIQCEDGGWGESY 138 (238)
Q Consensus 62 ~~~~~~i~~a~~~L~~~Q~~dG~w~~~~~~--~~~~~T~~al~aL~~~g~~~~-~~~~i~~a~~~L~~~Q~~dGgw~~~~ 138 (238)
+++...|++++++|+++|++|||| +.|+. +.++.|++++.+|..+++... ....++||++||++.|++||+|.+.+
T Consensus 87 ~~~~~~i~~g~~~ll~~Q~~dGgf-~~~~~~~~~~~lTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~Q~~dG~~~~~~ 165 (367)
T 1hzf_A 87 DHAVDLIQKGYMRIQQFRKADGSY-AAWLSRDSSTWLTAFVLKVLSLAQEQVGGSPEKLQETSNWLLSQQQADGSFQDPC 165 (367)
T ss_dssp HHHHHHHHHHHHHHHTTBCTTSCB-CSSTTSCCCHHHHHHHHHHHHHHGGGTCCCHHHHHHHHHHHGGGBCTTSCBCCSS
T ss_pred HHHHHHHHHHHHHHHhccCCCCCe-eccCCCCCcHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhccCCCccccc
Confidence 445689999999999999999999 55643 578899999999998876432 46899999999999999999999875
Q ss_pred CCCCCCcccCCCCCCCCHHHHHHHHHHHHHhCCCCC----------ChHHHHHHHHHHHhc
Q 026485 139 RSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMER----------DPTPLHRAAKLLINS 189 (238)
Q Consensus 139 ~~~~~~~y~~~~~~~~~~~~Ta~al~aL~~~g~~~~----------~~~~v~~a~~~L~~~ 189 (238)
...+...-.+..+..++++.|+|+|.+|...+.... ..+.|+|+++||.++
T Consensus 166 ~~~~~~~~gg~~~~~~~~~lTA~vl~aL~~~g~~~~~~~~~~~~~~~~~~i~ra~~yL~~~ 226 (367)
T 1hzf_A 166 PVLDRSMQGGLVGNDETVALTAFVTIALHHGLAVFQDEGAEPLKQRVEASISKASSFLGEK 226 (367)
T ss_dssp CCSCGGGGGGGSSTTHHHHHHHHHHHHHHHHHTTCCTTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccCCCCCCcccccchHHHHHHHHhhhccccccccchhhhhhHHHHHHHHHHHHHh
Confidence 543211100001224568899999999998764211 124789999999776
No 25
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A
Probab=99.58 E-value=1.9e-14 Score=121.82 Aligned_cols=131 Identities=15% Similarity=0.166 Sum_probs=96.7
Q ss_pred hHHHHHHHHHHHHHHHHhcccCCCCccccc--ccchhhhHHHHHHHHHcccc-CccHHHHHHHHHHHHh-ccccCCCCCC
Q 026485 61 TKEVKNFIAKATKFIEDIQKSDGSWYGSWG--ICFTYAAWFAISGLVAAKKT-YSNCLAIRKATDFLLK-IQCEDGGWGE 136 (238)
Q Consensus 61 ~~~~~~~i~~a~~~L~~~Q~~dG~w~~~~~--~~~~~~T~~al~aL~~~g~~-~~~~~~i~~a~~~L~~-~Q~~dGgw~~ 136 (238)
.++....|++++.+++++|++|||| +.|+ ..+++.|++|+.+|..+... ...++.++++++||++ .|++||+|.+
T Consensus 33 ~~~~~~~i~~g~~~~l~~q~~dGgf-~~f~~~~~s~wlTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~~Q~~dG~f~~ 111 (277)
T 1qqf_A 33 RQEALELIKKGYTQQLAFKQPISAY-AAFNNRPPSTWLTAYVSRVFSLAANLIAIDSQVLCGAVKWLILEKQKPDGVFQE 111 (277)
T ss_dssp HHHHHHHHHHHHHHHHTTBCTTSCB-CSSTTSCCCHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCC
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCc-cccCCCCccHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCCCccC
Confidence 3456688999999999999999999 4454 35688999999999988753 2246789999999996 9999999988
Q ss_pred CCCCCCCCcccCCCCC-CCCHHHHHHHHHHHHHhCCC-----CCChHHHHHHHHHHHhcccC
Q 026485 137 SYRSCPNKKYIPLDGN-RSNLVQTAWAMMSLIHAGQM-----ERDPTPLHRAAKLLINSQLE 192 (238)
Q Consensus 137 ~~~~~~~~~y~~~~~~-~~~~~~Ta~al~aL~~~g~~-----~~~~~~v~~a~~~L~~~Q~~ 192 (238)
.+..++.....+..+. .++++.|+++|.+|...+.. +...+.|++|++||.++++.
T Consensus 112 ~~~~~~~~~~g~~~~~~~~~~~lta~vl~aL~~~~~~~~~~~~~~~~~i~~A~~~L~~~~~~ 173 (277)
T 1qqf_A 112 DGPVIHQEMIGGFRNTKEADVSLTAFVLIALQEARDICEGQVNSLPGSINKAGEYLEASYLN 173 (277)
T ss_dssp SSCCSCGGGGGGGGSCTTHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHTT
T ss_pred CccccchhhcCCCCCCccCccchHHHHHHHHHhhhhccccCCCchHHHHHHHHHHHHHHhcc
Confidence 7654422111100000 24577899999999887421 12235899999999998764
No 26
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*
Probab=99.56 E-value=7e-16 Score=131.62 Aligned_cols=117 Identities=15% Similarity=0.164 Sum_probs=88.3
Q ss_pred CCCCCCCcccccCCCCchhhhccCcccccccccccCCCcchHHHHHHHHHHHHhhCCCc-----ch---HHHHHHHHHHH
Q 026485 1 MQSETGGVPAWEPTGAPSWLELLNPIEFLDEVIIEYDKVECTASALKAMTLFKKLYPKH-----RT---KEVKNFIAKAT 72 (238)
Q Consensus 1 ~qn~dGg~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~-----~~---~~~~~~i~~a~ 72 (238)
||++||||+.|++.+ ..++++||..+ |+|+++|++|..++...+.+ .. ++..++++|++
T Consensus 109 mQ~~nGGWpqFdpd~-~~Yl~~IpFnD------------DvtarvLelL~~~~~~~~~~~~~~~~~~~~~~~~~av~Rgi 175 (332)
T 1gxm_A 109 SQYSTGALPQFYPLK-GGYSDHATFND------------NGMAYALTVLDFAANKRAPFDTDVFSDNDRTRFKTAVTKGT 175 (332)
T ss_dssp HCCTTSCCBSEESCC-SGGGGSEECGG------------GHHHHHHHHHHHHHTTCTTSCSTTSCHHHHHHHHHHHHHHH
T ss_pred ccCCCCCccccCCCc-ccccccCCcch------------HHHHHHHHHHHHHHhccCCccccccccchhhhhHHHHHHHH
Confidence 799999999999975 78998886332 89999999999987421111 11 34568999999
Q ss_pred HHHHHhcccCCCCcccccccchhhhHH----------HHHHHHHc-------cccC--ccHHHHHHHHHHHHhcccc
Q 026485 73 KFIEDIQKSDGSWYGSWGICFTYAAWF----------AISGLVAA-------KKTY--SNCLAIRKATDFLLKIQCE 130 (238)
Q Consensus 73 ~~L~~~Q~~dG~w~~~~~~~~~~~T~~----------al~aL~~~-------g~~~--~~~~~i~~a~~~L~~~Q~~ 130 (238)
+||++.|.++|+|.+.|+..+.+.|.. +|.+|..+ +.+. +...+|++|++||.++|++
T Consensus 176 d~Llk~Qe~dggw~g~Wg~qydygT~~Pa~ARayE~psL~~~es~giv~~LM~~~~~~~v~~aI~~Av~WL~~~q~~ 252 (332)
T 1gxm_A 176 DYILKAQWKQNGVLTVWCAQHGALDYQPKKARAYELESLSGSESVGVLAFLMTQPQTAEIEQAVRAGVAWFNSPRTY 252 (332)
T ss_dssp HHHHHHSCEETTEECCCCSEECTTTCCBCCCSTTCCSSEETTTHHHHHHHHTTSCCCHHHHHHHHHHHHHHTCTTTS
T ss_pred HHHHHhhCccCCCcCeeccccccccccccccccccccchhHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999988887755 43333322 2222 1223799999999999983
No 27
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}
Probab=99.56 E-value=3e-14 Score=145.89 Aligned_cols=188 Identities=20% Similarity=0.219 Sum_probs=130.5
Q ss_pred CCCCCCCcccccCCCCchhhhccCcccccccccccCCCcchHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHH-hc
Q 026485 1 MQSETGGVPAWEPTGAPSWLELLNPIEFLDEVIIEYDKVECTASALKAMTLFKKLYPKHRTKEVKNFIAKATKFIED-IQ 79 (238)
Q Consensus 1 ~qn~dGg~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~~a~~~L~~-~Q 79 (238)
+|++||||+.|....++.|| ||+|+..|..+.+.. .. .+..++++++||.+ .|
T Consensus 1058 ~q~~dGsfs~w~~~~~s~wL---------------------TAyv~~~l~~A~~~~--~v---~~~~l~~a~~~L~~~~q 1111 (1661)
T 2b39_A 1058 FRQKSSAYAAFQYRPPSTWL---------------------TAYVVKVFALAANLI--AI---DSKDLCETVKWLILEKQ 1111 (1661)
T ss_dssp TBCTTSCBCSSTTSCCCHHH---------------------HHHHHHHHHHHTTTS--CC---CHHHHHHHHHHHHHHTB
T ss_pred hhcCCCCccccCCCCCchhh---------------------hHHHHHHHHhhhhcc--cC---CHHHHHHHHHHhhHhhC
Confidence 68999999999887788888 999999999987542 11 14789999999995 99
Q ss_pred ccCCCCcccc--------c--cc----chhhhHHHHHHHHHcccc-----CccHHHHHHHHHHHHhccccCCC-CC----
Q 026485 80 KSDGSWYGSW--------G--IC----FTYAAWFAISGLVAAKKT-----YSNCLAIRKATDFLLKIQCEDGG-WG---- 135 (238)
Q Consensus 80 ~~dG~w~~~~--------~--~~----~~~~T~~al~aL~~~g~~-----~~~~~~i~~a~~~L~~~Q~~dGg-w~---- 135 (238)
++||+|.... + .. ....|++++.+|.+.+.. ......+++|++||.+....-.. ..
T Consensus 1112 ~~~g~f~~~~~~~~~~~~gg~~~~~~~~~~ltAyvl~aL~~~~~~~~~~~~~~~~~i~~a~~yL~~~~~~~~~~y~~A~l 1191 (1661)
T 2b39_A 1112 KPDGIFQEDGPVIHQEMIGGFRDTREKDVSLTAFVLIALHEAKDICEAQVNSLGRSIAKAGDFLENHYRELRRPYTVAIA 1191 (1661)
T ss_dssp CTTSCBCCCSCCCCTTSCCCTTCCTTSSHHHHHHHHHHHHHTTTTTTTTCSSHHHHHHHHHHHHHHHTTTCCSHHHHHHH
T ss_pred CCCCccccccceechhhcCCccccccCccccHHHHHHHHHhccccccccCcchhHHHHHHHHHHHHhhhccCCHHHHHHH
Confidence 9999994210 1 01 334689999999988653 12456788999999765221100 00
Q ss_pred -------CCCC---------CCCCCcccCCCCC-CCCHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcccCCCCCCC
Q 026485 136 -------ESYR---------SCPNKKYIPLDGN-RSNLVQTAWAMMSLIHAGQMERDPTPLHRAAKLLINSQLEDGDFPQ 198 (238)
Q Consensus 136 -------~~~~---------~~~~~~y~~~~~~-~~~~~~Ta~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~~dGgw~~ 198 (238)
+... ......|+...++ ..++..|+|||++|...+... .+.+.++||+++|+.+|+|..
T Consensus 1192 ayAL~l~g~~a~~~l~~L~~~~~~~~~W~~~~~~~~~vE~tayaLlall~~~~~~----~~~~iv~wL~~qr~~~gg~~S 1267 (1661)
T 2b39_A 1192 AYALALLGKLEGDRLTKFLNTAKEKNRWEEPNQKLYNVEATSYALLALLARKDYD----TTPPVVRWLNEQRYYGGGYGS 1267 (1661)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHSBTTTBCCCSSCHHHHHHHHHHHHHHHHHHTCTT----TSHHHHHHHHHCCTBTTBBCS
T ss_pred HHHHHHcCCcHHHHHHHHHhhccCCCCCCCCCCCcchHHHHHHHHHHHHhcCChh----hHHHHHHHHHhcccCCCCccc
Confidence 0000 0000112110111 125779999999999876532 466788999999999999997
Q ss_pred CccccccCCccccccCCchhhHHHHHHHHHHHhccC
Q 026485 199 QELTGVFMENCMLHYPIYRNIFPMWALAEYRSRLLL 234 (238)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~l~aL~~~~~~~~~ 234 (238)
.+ .++++|+||..|..+...
T Consensus 1268 Tq----------------dT~~Al~AL~~y~~~~~~ 1287 (1661)
T 2b39_A 1268 TQ----------------ATFMVFQALAQYQKDVPD 1287 (1661)
T ss_dssp HH----------------HHHHHHHHHHHHHHHSCC
T ss_pred ch----------------HHHHHHHHHHHHHHHcCc
Confidence 65 378999999999987754
No 28
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A
Probab=99.56 E-value=3.8e-14 Score=121.82 Aligned_cols=130 Identities=15% Similarity=0.191 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCccccc--ccchhhhHHHHHHHHHccccC-ccHHHHHHHHHHHHh-ccccCCCCCCC
Q 026485 62 KEVKNFIAKATKFIEDIQKSDGSWYGSWG--ICFTYAAWFAISGLVAAKKTY-SNCLAIRKATDFLLK-IQCEDGGWGES 137 (238)
Q Consensus 62 ~~~~~~i~~a~~~L~~~Q~~dG~w~~~~~--~~~~~~T~~al~aL~~~g~~~-~~~~~i~~a~~~L~~-~Q~~dGgw~~~ 137 (238)
++....|++++.+++++|++|||| +.|+ ..+++.|++|+.+|..+.... .....++++++||++ .|++||+|.+.
T Consensus 50 ~~~~~~i~~g~~~~l~~q~~dGgf-~~f~~~~~s~wlTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~~Q~~dGsf~~~ 128 (310)
T 2wy7_A 50 QGALELIKKGYTQQLAFRQPSSAF-AAFVKRAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPDGVFQED 128 (310)
T ss_dssp HHHHHHHHHHHHHHHTTBCTTSCB-CSSTTSCCCHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCS
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCc-ccCCCCCccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCCCccccC
Confidence 445678999999999999999999 4454 356889999999999887532 246789999999996 99999999887
Q ss_pred CCCCCCCcccCCCCC-CCCHHHHHHHHHHHHHhCCC-----CCChHHHHHHHHHHHhcccC
Q 026485 138 YRSCPNKKYIPLDGN-RSNLVQTAWAMMSLIHAGQM-----ERDPTPLHRAAKLLINSQLE 192 (238)
Q Consensus 138 ~~~~~~~~y~~~~~~-~~~~~~Ta~al~aL~~~g~~-----~~~~~~v~~a~~~L~~~Q~~ 192 (238)
+..++.....+..+. .++++.|+++|.+|...+.. ....+.|++|++||.++|+.
T Consensus 129 ~~~~~~~~~g~~~~~~~~~~~~ta~vl~aL~~~~~~~~~~~~~~~~~i~~A~~~L~~~~~~ 189 (310)
T 2wy7_A 129 APVIHQEMIGGLRNNNEKDMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLEANYMN 189 (310)
T ss_dssp SCCSCGGGGGGGTTCSCHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHGGG
T ss_pred CCccCHhhcCCcccccccccchHHHHHHHHHhcccccccCCcchHHHHHHHHHHHHHHhhc
Confidence 654422111100000 24577899999999987431 12235899999999998875
No 29
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A
Probab=99.55 E-value=1.2e-13 Score=141.54 Aligned_cols=186 Identities=21% Similarity=0.267 Sum_probs=127.2
Q ss_pred CCCCCCCcccccCCCCchhhhccCcccccccccccCCCcchHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHH-hc
Q 026485 1 MQSETGGVPAWEPTGAPSWLELLNPIEFLDEVIIEYDKVECTASALKAMTLFKKLYPKHRTKEVKNFIAKATKFIED-IQ 79 (238)
Q Consensus 1 ~qn~dGg~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~~a~~~L~~-~Q 79 (238)
+|++||||+.|....++.|| ||+|+..|..+.+... . .+..++++++||.+ .|
T Consensus 1059 ~q~~dGsfs~w~~~~~s~wL---------------------TAyv~~~l~~A~~~~~--v---~~~~l~~a~~~L~~~~q 1112 (1676)
T 3cu7_A 1059 YRNADYSYSVWKGGSASTWL---------------------TAFALRVLGQVNKYVE--Q---NQNSICNSLLWLVENYQ 1112 (1676)
T ss_dssp GBCTTSCBCSSSSSCCCHHH---------------------HHHHHHHHHHHHTTSC--C---CHHHHHHHHHHHHHHSB
T ss_pred ccCCCCCccccCCCCCcEEE---------------------eHHHHHHHHHHHhccc--C---CHHHHHHHHHHHHHhhC
Confidence 58999999999777788888 9999999999876421 1 14789999999999 99
Q ss_pred ccCCCCcccc--------cc-------cchhhhHHHHHHHHHcccc---CccHHHHHHHHHHHHhcc-------------
Q 026485 80 KSDGSWYGSW--------GI-------CFTYAAWFAISGLVAAKKT---YSNCLAIRKATDFLLKIQ------------- 128 (238)
Q Consensus 80 ~~dG~w~~~~--------~~-------~~~~~T~~al~aL~~~g~~---~~~~~~i~~a~~~L~~~Q------------- 128 (238)
++||+|.... +. .....|++++.+|++.+.. ......+.+|++||.++.
T Consensus 1113 ~~~g~f~~~~~~~~~~~~gg~~~~~~~~~~~ltAyvl~aL~~~~~~~~~~~~~~~i~~a~~yL~~~~~~~~~~y~~A~lA 1192 (1676)
T 3cu7_A 1113 LDNGSFKENSQYQPIKLQGTLPVEARENSLYLTAFTVIGIRKAFDICPLVKIDTALIKADNFLLENTLPAQSTFTLAISA 1192 (1676)
T ss_dssp CTTSCBCCCSSCCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHTGGGSCCHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHH
T ss_pred CCCCcccCCccccchhhcCCcccccccCccccHHHHHHHHHhcccccCCcccHHHHHHHHHHHHHhhhccCCHHHHHHHH
Confidence 9999994311 00 1234689999999887643 113455666777765431
Q ss_pred ------------------------c-cCC-----CCCCCCCCCCCCcccCCCCCCCCHHHHHHHHHHHHHhCCCCCChHH
Q 026485 129 ------------------------C-EDG-----GWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMERDPTP 178 (238)
Q Consensus 129 ------------------------~-~dG-----gw~~~~~~~~~~~y~~~~~~~~~~~~Ta~al~aL~~~g~~~~~~~~ 178 (238)
. .++ .|...........|. .+...++..|+|+|++|...+. .+.
T Consensus 1193 ~Al~l~g~~~~~a~~~l~~L~~~a~~~~~~~~~~~w~~~~~~~~~~~~~--~~~~~~ve~tayaLlall~~~~----~~~ 1266 (1676)
T 3cu7_A 1193 YALSLGDKTHPQFRSIVSALKREALVKGNPPIYRFWKDNLQHKDSSVPN--TGTARMVETTAYALLTSLNLKD----INY 1266 (1676)
T ss_dssp HHHTTSCTTCHHHHHHHHHHHHHCEEETTTTSEEECCSCSSCCSSCCCS--CCCHHHHHHHHHHHHHHHHTTC----HHH
T ss_pred HHHHhcCCchhhHHHHHHHHHhhhhhccCCccccCCCCCCCCccccccC--CCccchHHHHHHHHHHHHhcCC----hhH
Confidence 1 111 222110000000000 0011257799999999998653 336
Q ss_pred HHHHHHHHHhcccCCCCCCCCccccccCCccccccCCchhhHHHHHHHHHHHhccC
Q 026485 179 LHRAAKLLINSQLEDGDFPQQELTGVFMENCMLHYPIYRNIFPMWALAEYRSRLLL 234 (238)
Q Consensus 179 v~~a~~~L~~~Q~~dGgw~~~~~~~~~~~~~~~~~~~~~~~~~l~aL~~~~~~~~~ 234 (238)
+.+.++||+++|+.+|+|...+. ++++|+||..|..+...
T Consensus 1267 ~~~iv~wL~~qr~~~Gg~~STQd----------------T~~Al~AL~~y~~~~~~ 1306 (1676)
T 3cu7_A 1267 VNPVIKWLSEEQRYGGGFYSTQD----------------TINAIEGLTEYSLLVKQ 1306 (1676)
T ss_dssp HHHHHHHHHHHSCSSSCCSTTTT----------------HHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHhccCCCCCccccHH----------------HHHHHHHHHHHHHHcCC
Confidence 78889999999999999997753 88999999999887755
No 30
>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.50 E-value=2.5e-13 Score=119.42 Aligned_cols=136 Identities=19% Similarity=0.151 Sum_probs=100.1
Q ss_pred cCCCcchHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHhcc---c-CCCCcc------------cccccchhhhH
Q 026485 35 EYDKVECTASALKAMTLFKKLYPKHRTKEVKNFIAKATKFIEDIQK---S-DGSWYG------------SWGICFTYAAW 98 (238)
Q Consensus 35 ~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~---~-dG~w~~------------~~~~~~~~~T~ 98 (238)
+.+....|..+|.+|..++.. .+. . -..++.++||.++|+ + ||+|.. .+++.++..+.
T Consensus 90 ~~~hl~~Ty~Al~~L~ilg~~--~~~--~--vdr~~i~~~l~~lQ~~~~~~dGsF~~~~~~~~~dg~~~~~ge~D~R~~Y 163 (390)
T 3dra_B 90 DCPNLSSTLFALYNLLILKSP--YHT--I--INRKKIMNFLCKCQVKDGINKGGFVPTLYYNEENGDYKQYGEPDLRVCY 163 (390)
T ss_dssp SCCBHHHHHHHHHHHHHTTCC--GGG--T--CCHHHHHHHHHHHBCCSSTTTTCBCSEEEEETTTTEEEEESCCCHHHHH
T ss_pred CcccHHHHHHHHHHHHHhCch--hhc--c--ccHHHHHHHHHHHhCCCCCCCCceeeeccccccccccccCCcchHHHHH
Confidence 345567799999999998742 110 0 125678999999999 7 899972 25666666666
Q ss_pred HHHHHHHHccccCc-----------cHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcccCCCCCCCCHHHHHHHHHHHH
Q 026485 99 FAISGLVAAKKTYS-----------NCLAIRKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLI 167 (238)
Q Consensus 99 ~al~aL~~~g~~~~-----------~~~~i~~a~~~L~~~Q~~dGgw~~~~~~~~~~~y~~~~~~~~~~~~Ta~al~aL~ 167 (238)
.|+..+..++...+ ....++++++||+++|+.||||+..+ +.++..-.|.+||.+|.
T Consensus 164 cA~~i~~lL~~~~~~~~~~~~~~~~~~id~~~~~~~I~~cq~ydGGfg~~p------------~~EsH~G~TfCalaaL~ 231 (390)
T 3dra_B 164 MALLIRHLMKYDDNNNNNNREDSNETDIDLISLQQFILDRININGGFSSTI------------MDESHLGFTFCAIASLK 231 (390)
T ss_dssp HHHHHHHHTTCC-------------CCCCHHHHHHHHHTTBCTTSCBCSST------------TSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcccccccccccccccccHHHHHHHHHHhcCCCCCcCCCC------------CcccccchhHHHHHHHH
Confidence 66666666654420 01237899999999999999998764 44677778999999999
Q ss_pred HhCCCCCChHHHHHHHHHHHhccc
Q 026485 168 HAGQMERDPTPLHRAAKLLINSQL 191 (238)
Q Consensus 168 ~~g~~~~~~~~v~~a~~~L~~~Q~ 191 (238)
..+... ..+++.++||+++|.
T Consensus 232 lL~~~~---~d~~~l~~WL~~RQ~ 252 (390)
T 3dra_B 232 LLNYPL---EKLKSTKEWLIHRQV 252 (390)
T ss_dssp HTTCCG---GGCHHHHHHHHTTBC
T ss_pred HhCccc---ccHHHHHHHHHHcCc
Confidence 988763 267889999999997
No 31
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}
Probab=99.32 E-value=1.2e-11 Score=125.02 Aligned_cols=120 Identities=16% Similarity=0.207 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHHHhcccCCCCccccc------ccchhhhHHHHHHHHHccccC-ccHHHHHHHHHHHHhccccCCCCCC
Q 026485 64 VKNFIAKATKFIEDIQKSDGSWYGSWG------ICFTYAAWFAISGLVAAKKTY-SNCLAIRKATDFLLKIQCEDGGWGE 136 (238)
Q Consensus 64 ~~~~i~~a~~~L~~~Q~~dG~w~~~~~------~~~~~~T~~al~aL~~~g~~~-~~~~~i~~a~~~L~~~Q~~dGgw~~ 136 (238)
....|++++++|+++|++||+| +.|+ ...++.|++++..|..+.... ..+..+++|++||+++|++||+|.+
T Consensus 981 a~~~i~~g~~~ll~~q~~dGgf-~~f~~~~~~~~~s~wlTAyv~~~l~~a~~~~~v~~~~l~~a~~wL~~~Q~~dG~f~~ 1059 (1451)
T 4acq_A 981 AIGYLNTGYQRQLNYKHYDGSY-STFGERYGRNQGNTWLTAFVLKTFAQARAYIFIDEAHITQALIWLSQRQKDNGCFRS 1059 (1451)
T ss_dssp HHHHHHHHHHHHGGGBCTTSCB-CSSTTGGGCCCCCHHHHHHHHHHHHHHTTTSCCCTHHHHHHHHHHHHTEETTTEECC
T ss_pred HHHHHHHHHHHHHhhcCCCCCe-eeccCCCCCCCCchhHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHhhcccCCcccc
Confidence 3466899999999999999999 4453 357889999999999877532 2568899999999999999999986
Q ss_pred CCCCCCCCcccCCCCC-CCCHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhc
Q 026485 137 SYRSCPNKKYIPLDGN-RSNLVQTAWAMMSLIHAGQMERDPTPLHRAAKLLINS 189 (238)
Q Consensus 137 ~~~~~~~~~y~~~~~~-~~~~~~Ta~al~aL~~~g~~~~~~~~v~~a~~~L~~~ 189 (238)
....++.. +.|+ ..+++.|||+|.+|..++....+ ..+++|++||.++
T Consensus 1060 ~g~~~~~~----m~gg~~~~~~lTAyvl~aL~~~g~~~~~-~~i~~A~~~L~~~ 1108 (1451)
T 4acq_A 1060 SGSLLNNA----IKGGVEDEVTLSAYITIALLEIPLTVTH-PVVRNALFCLESA 1108 (1451)
T ss_dssp CCCCSCGG----GCCSCSCHHHHHHHHHHHHHHTTCCTTC-HHHHHHHHHHHHH
T ss_pred cCcccchh----hcCCCCCCccchHHHHHHHHHcCCCCCC-HHHHHHHHHHHHh
Confidence 54332211 1233 35688999999999999876544 4899999999865
No 32
>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.30 E-value=1.9e-11 Score=107.43 Aligned_cols=140 Identities=16% Similarity=0.208 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHhcccCCCCcccc-cccchhhhHHHHHHHHHccccCccHHHHHHHHHHHHhccc----------------
Q 026485 67 FIAKATKFIEDIQKSDGSWYGSW-GICFTYAAWFAISGLVAAKKTYSNCLAIRKATDFLLKIQC---------------- 129 (238)
Q Consensus 67 ~i~~a~~~L~~~Q~~dG~w~~~~-~~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~---------------- 129 (238)
.++++++||+++|+.||||.... .+.+.-.|..+|.+|..++... ..+.+.+.||..+|.
T Consensus 192 d~~~~~~~I~~cq~ydGGfg~~p~~EsH~G~TfCalaaL~lL~~~~---~d~~~l~~WL~~RQ~~~~~~~~~~~~~~~~~ 268 (390)
T 3dra_B 192 DLISLQQFILDRININGGFSSTIMDESHLGFTFCAIASLKLLNYPL---EKLKSTKEWLIHRQVDYPENLYPKDGNGDGN 268 (390)
T ss_dssp CHHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHTTCCG---GGCHHHHHHHHTTBCCCCTTTCC--------
T ss_pred cHHHHHHHHHHhcCCCCCcCCCCCcccccchhHHHHHHHHHhCccc---ccHHHHHHHHHHcCccccccccccccccccc
Confidence 47899999999999999997533 3455556888899999988763 346899999999997
Q ss_pred ------------cCCCCCCCCCCCCCCcccCCCCCCCCHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhc-ccC-CCC
Q 026485 130 ------------EDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMERDPTPLHRAAKLLINS-QLE-DGD 195 (238)
Q Consensus 130 ------------~dGgw~~~~~~~~~~~y~~~~~~~~~~~~Ta~al~aL~~~g~~~~~~~~v~~a~~~L~~~-Q~~-dGg 195 (238)
++|||.+.+ +...|+..+.|++.+|...+....+....++..+||+++ |++ .||
T Consensus 269 ~~~~~~~~~~~~~~GGFnGR~------------nKl~D~CYS~Wv~~sL~iL~~~~~~l~d~~~l~~yiL~c~Q~~~~GG 336 (390)
T 3dra_B 269 GNGDNYEYYRNIDIGGFNGRE------------NKLSDTCYSWWCTGSLYNIDVNFIKLVDLNKAEDYLLNKTQNQLFGG 336 (390)
T ss_dssp ----CCTTCCGGGTTSBBSST------------TCCBCTHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHTTBCTTTCS
T ss_pred cccccccccccccCCCccCCC------------CCccchhHHHHHHHHHHHhccccccccCHHHHHHHHHHhccCCCCCC
Confidence 468887643 345788899999999988874110111466789999997 555 899
Q ss_pred CCCCccccccCCccccccCCchhhHHHHHHHHHHH
Q 026485 196 FPQQELTGVFMENCMLHYPIYRNIFPMWALAEYRS 230 (238)
Q Consensus 196 w~~~~~~~~~~~~~~~~~~~~~~~~~l~aL~~~~~ 230 (238)
|.... |..++. |-+++.|.+|.-...
T Consensus 337 f~d~P--g~~pD~-------yHT~~gLagLsl~~~ 362 (390)
T 3dra_B 337 FGRDP--DSTPDP-------MHSYLALASLSLWNH 362 (390)
T ss_dssp BCSST--TSCCCH-------HHHHHHHHHHHHHHH
T ss_pred cCCCC--CCCCch-------HHHHHHHHHHHHcCC
Confidence 98753 222222 226788888877653
No 33
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...
Probab=99.17 E-value=2.3e-10 Score=111.34 Aligned_cols=124 Identities=15% Similarity=0.216 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHHHhcccCCCCccccc--ccchhhhHHHHHHHHHccccC-ccHHHHHHHHHHHHh-ccccCCCCCCCCC
Q 026485 64 VKNFIAKATKFIEDIQKSDGSWYGSWG--ICFTYAAWFAISGLVAAKKTY-SNCLAIRKATDFLLK-IQCEDGGWGESYR 139 (238)
Q Consensus 64 ~~~~i~~a~~~L~~~Q~~dG~w~~~~~--~~~~~~T~~al~aL~~~g~~~-~~~~~i~~a~~~L~~-~Q~~dGgw~~~~~ 139 (238)
....|++++.+|+++|++|||| +.|+ ...++.|++++..|..+.... .....+++|++||++ .|.+||+|.+.+.
T Consensus 297 a~~~i~~g~~rll~~Q~~DGsf-s~w~~~~~s~wlTAyv~~~l~~a~~~~~v~~~~i~~al~~L~~~~Q~~dG~f~~~~~ 375 (915)
T 2hr0_B 297 ALELIKKGYTQQLAFRQPSSAF-AAFVKRAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPDGVFQEDAP 375 (915)
T ss_dssp HHHHHHHHHHHHGGGCCTTTCC-BSSSSSCBCHHHHHHHHHHHHTTTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCCSC
T ss_pred HHHHHHHHHHHHHHhhcCCCCc-cccCCCCCcceehHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhccCCCccccCcc
Confidence 3467889999999999999999 4554 456889999999999887432 246889999999995 9999999987654
Q ss_pred CCCCCcccCCCCC-----CCCHHHHHHHHHHHHHhCCC-----CCChHHHHHHHHHHHhcccC
Q 026485 140 SCPNKKYIPLDGN-----RSNLVQTAWAMMSLIHAGQM-----ERDPTPLHRAAKLLINSQLE 192 (238)
Q Consensus 140 ~~~~~~y~~~~~~-----~~~~~~Ta~al~aL~~~g~~-----~~~~~~v~~a~~~L~~~Q~~ 192 (238)
..+.. +.++ .+++..|||+|.+|...+.. ......+.+|++||.+++..
T Consensus 376 ~~~~~----m~gg~~~~~~~~~~ltAyvl~aL~~~g~~~~~~~~~~~~~i~~A~~yL~~~~~~ 434 (915)
T 2hr0_B 376 VIHQE----MIGGLRNNNEKDMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLEANYMN 434 (915)
T ss_dssp CSSSC----CCCSCCCCTTHHHHHHHHHHHHHHHHTTTSTTTCTTHHHHHHHHHHHHHHHGGG
T ss_pred ccchh----hcCCccCccccccccHHHHHHHHHhcccccccCcccchHHHHHHHHHHHHhhhc
Confidence 33211 1122 24577899999999998653 11234889999999987654
No 34
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*
Probab=99.13 E-value=2.4e-10 Score=100.71 Aligned_cols=107 Identities=15% Similarity=0.086 Sum_probs=82.8
Q ss_pred cCCCcchHHHHHHHHHHHHhhCCCcc--hHHHHHHHHHHHHHHHHhcccCCCCcccccccchhhhHHHHHHHHHccccCc
Q 026485 35 EYDKVECTASALKAMTLFKKLYPKHR--TKEVKNFIAKATKFIEDIQKSDGSWYGSWGICFTYAAWFAISGLVAAKKTYS 112 (238)
Q Consensus 35 ~~~~~d~Ta~~l~aL~~~~~~~~~~~--~~~~~~~i~~a~~~L~~~Q~~dG~w~~~~~~~~~~~T~~al~aL~~~g~~~~ 112 (238)
++.++|+||++++||..+++.. .++ .++++.+++..+++|.+.|++||+|+ +.|.|+.||.||...+..+.
T Consensus 174 ~~~sVDT~AMA~lAL~C~~~~~-~~~~~~~~i~~al~~l~~~l~~~Q~~dG~FG------N~~ST~lA~QAL~~~~~~~~ 246 (414)
T 2bb6_A 174 DHVSVDTMAMAGMAFSCLELSN-LNPKQRNRINLALKRVQEKILKAQTPEGYFG------NVYSTPLALQLLMGSLRPSV 246 (414)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHT-SCGGGHHHHHHHHHHHHHHHHHTBCTTSCBS------STTTHHHHHHHHTTCSSCCH
T ss_pred CcccccHHHHHHHHHHHHhhcC-CCcchHHHHHHHHHHHHHHHHHhhcCCCCcc------chhhHHHHHHHHHhcCCCcc
Confidence 4457999999999999998752 111 23344555555588889999999993 57899999999999987642
Q ss_pred c-HHHHHHHHHHHHhccccCCCCCCCCCCCCCCcccCCCCCCCCHHHHHHHHHHHHH
Q 026485 113 N-CLAIRKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIH 168 (238)
Q Consensus 113 ~-~~~i~~a~~~L~~~Q~~dGgw~~~~~~~~~~~y~~~~~~~~~~~~Ta~al~aL~~ 168 (238)
. ...+.++++||++ |.+||+|. ++..|+-+|.+|..
T Consensus 247 ~~~w~~~~a~~~Ll~-q~~dG~F~-------------------np~ataQ~lpaL~g 283 (414)
T 2bb6_A 247 ELGTACLKAKAALQA-SLQHKTFQ-------------------NPLMISQLLPVLNQ 283 (414)
T ss_dssp HHHHHHHHHHHHHHH-HHTTTCCC-------------------SHHHHHHHHHHTTT
T ss_pred cccchHHHHHHHHHH-hccCCCCC-------------------ChHHHHHHHHHhcC
Confidence 1 1478899999999 99999995 25689988988853
No 35
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}
Probab=99.10 E-value=1.4e-10 Score=116.72 Aligned_cols=131 Identities=16% Similarity=0.247 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCccccc--ccchhhhHHHHHHHHHccccC--ccHHHHHHHHHHHHhccccCCCCCCCC
Q 026485 63 EVKNFIAKATKFIEDIQKSDGSWYGSWG--ICFTYAAWFAISGLVAAKKTY--SNCLAIRKATDFLLKIQCEDGGWGESY 138 (238)
Q Consensus 63 ~~~~~i~~a~~~L~~~Q~~dG~w~~~~~--~~~~~~T~~al~aL~~~g~~~--~~~~~i~~a~~~L~~~Q~~dGgw~~~~ 138 (238)
+....|++++++|+++|++||||. .|. ..+.+.|++++.+|..+.... .....++++++||.+.|++||+|.+.+
T Consensus 869 ~~~~~i~~g~~rll~~q~~dGgf~-~f~~~~~s~~lTa~v~~~l~~a~~~~~~v~~~~l~~a~~~L~~~q~~dG~f~~~~ 947 (1325)
T 2pn5_A 869 KATNLLRQGYQNQMRYRQTDGSFG-LWETTNGSVFLTAFVGTSMQTAVKYISDIDAAMVEKALDWLASKQHFSGRFDKAG 947 (1325)
T ss_dssp HHHHHHHHHHHHHGGGBCTTSCBC-SSSSSCCCHHHHHHHHHHHHHHTTTCSCSCHHHHHHHHHHHHHTCCTTSCCCCCS
T ss_pred HHHHHHHHHHHHHHhcCCCCCCee-ccCCCCCCeeehHHHHHHHHHHHhhEEcCCHHHHHHHHHHHHhhhccCCCccccc
Confidence 355789999999999999999994 443 456889999999999875431 246889999999999999999997764
Q ss_pred CCCCCCcccCCCCCCCCHHHHHHHHHHHHHhCCCC-CChHHHHHHHHHHHhcccC-CCCCC
Q 026485 139 RSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQME-RDPTPLHRAAKLLINSQLE-DGDFP 197 (238)
Q Consensus 139 ~~~~~~~y~~~~~~~~~~~~Ta~al~aL~~~g~~~-~~~~~v~~a~~~L~~~Q~~-dGgw~ 197 (238)
...+.. +.+ +.......|+|+|.+|...+... .....+++|++||.++|.. +++|.
T Consensus 948 ~~~~~~-~~g--~~~~~~~~tayvl~aL~~~g~~~~~~~~~i~~a~~~L~~~~~~~~~~~~ 1005 (1325)
T 2pn5_A 948 AEYHKE-MQG--GLRNGVALTSYVLMALLENDIAKAKHAEVIQKGMTYLSNQFGSINNAYD 1005 (1325)
T ss_dssp CCSCHH-HHC--CSSTTHHHHHHHHHHHHTCHHHHHHTHHHHHHHHHHHHHHGGGCCCHHH
T ss_pred cccChh-hcC--cccCCccccHHHHHHHhhCcccccccHHHHHHHHHHHHHhhcccCCHHH
Confidence 332111 111 11245778999999998665321 1224789999999998876 67764
No 36
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*
Probab=99.00 E-value=1.4e-09 Score=95.33 Aligned_cols=107 Identities=19% Similarity=0.141 Sum_probs=86.5
Q ss_pred cCCCcchHHHHHHHHHHHHh---hCCCcc-hHHHHHHHHHHHHHHHHhcccCCCCcccccccchhhhHHHHHHHHHcccc
Q 026485 35 EYDKVECTASALKAMTLFKK---LYPKHR-TKEVKNFIAKATKFIEDIQKSDGSWYGSWGICFTYAAWFAISGLVAAKKT 110 (238)
Q Consensus 35 ~~~~~d~Ta~~l~aL~~~~~---~~~~~~-~~~~~~~i~~a~~~L~~~Q~~dG~w~~~~~~~~~~~T~~al~aL~~~g~~ 110 (238)
++-++|++|++++||..+.+ .....+ +.++..+|++.+++|++.|++||+|+ +.|.|+.|+.||...+..
T Consensus 148 ~~~sVDT~AMa~LAL~C~~~~~~~~~~~~~~~~i~~ai~~~~~~l~~~q~~dG~fG------n~yST~LA~QAL~~~~~~ 221 (399)
T 2pmv_A 148 SPFNVDTGAMATLALTCMYNKIPVGSEEGYRSLFGQVLKDIVEKISMKIKDNGIIG------DIYSTGLAMQALSVTPEP 221 (399)
T ss_dssp SCCCHHHHHHHHHHHHHHHTBCCTTCCSSHHHHHHHHHHHHHHHHTTSBCTTSCBS------SHHHHHHHHHHHHHCSSC
T ss_pred CcccchHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHHHHhhcCCCccc------ccccHHHHHHHHHhcCCC
Confidence 34578999999999999986 211111 33477899999999999999999993 689999999999999875
Q ss_pred CccHH-HHHHHHHHHHhccccCCCCCCCCCCCCCCcccCCCCCCCCHHHHHHHHHHHHH
Q 026485 111 YSNCL-AIRKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIH 168 (238)
Q Consensus 111 ~~~~~-~i~~a~~~L~~~Q~~dGgw~~~~~~~~~~~y~~~~~~~~~~~~Ta~al~aL~~ 168 (238)
. ..+ .+.++++||++ |.+||+|. ++..|+-+|-+|..
T Consensus 222 ~-~~~W~c~~al~~l~~-q~~~G~F~-------------------np~~taQilPaL~~ 259 (399)
T 2pmv_A 222 S-KKEWNCKKTTDMILN-EIKQGKFH-------------------NPMSIAQILPSLKG 259 (399)
T ss_dssp C-SSCCCHHHHHHHHHH-HHTTTTTC-------------------SHHHHHHHHHHHTT
T ss_pred c-cccccHHHHHHHHHH-HhhCCCcC-------------------CHHHHHHHHHHhcC
Confidence 3 334 68999999999 99999995 36788888888854
No 37
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*
Probab=98.97 E-value=6.5e-09 Score=99.35 Aligned_cols=148 Identities=20% Similarity=0.281 Sum_probs=97.9
Q ss_pred hHHHHHHHHHHHHhh--CCCcchHHHHHHHHHHHHHHHHhcccCCCCccccc--ccchhhhHHHHHHHHHccccC-ccHH
Q 026485 41 CTASALKAMTLFKKL--YPKHRTKEVKNFIAKATKFIEDIQKSDGSWYGSWG--ICFTYAAWFAISGLVAAKKTY-SNCL 115 (238)
Q Consensus 41 ~Ta~~l~aL~~~~~~--~~~~~~~~~~~~i~~a~~~L~~~Q~~dG~w~~~~~--~~~~~~T~~al~aL~~~g~~~-~~~~ 115 (238)
.+.+++.+|...+.. .......+....|++++.-|+++|++|||| +.|+ .+.+|.|++++..|..+.... ....
T Consensus 341 p~i~v~~yl~~t~q~~~l~~~~~~~a~~~l~~gyqrll~~q~~DGsf-s~w~~~~~s~wLTAyV~~~l~~A~~~i~id~~ 419 (767)
T 4fxk_B 341 PTLAASRYLDKTEQWSTLPPETKDHAVDLIQKGYMRIQQFRKADGSY-AAWLSRDSSTWLTAFVLKVLSLAQEQVGGSPE 419 (767)
T ss_dssp HHHHHHHHHHHTCTTTTSCSSHHHHHHHHHHHHHHHHTTTBCTTSCB-BSSSSSCBCHHHHHHHHHHHHHTCSSSSCCHH
T ss_pred hhhhHHHHHHhhhhhcccCHHHHHHHHHHHHHHHHHHHHhhcCCCCc-ccCCCCCCCchhHHHHHHHHHHHHhhcCcchH
Confidence 455566666554321 011112234467899999999999999999 4554 356889999999999887642 2567
Q ss_pred HHHHHHHHHHhccccCCCCCCCCCCCCCCcccCCCCCCCCHHHHHHHHHHHHHhCCCCCC----------hHHHHHHHHH
Q 026485 116 AIRKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMERD----------PTPLHRAAKL 185 (238)
Q Consensus 116 ~i~~a~~~L~~~Q~~dGgw~~~~~~~~~~~y~~~~~~~~~~~~Ta~al~aL~~~g~~~~~----------~~~v~~a~~~ 185 (238)
.+.+++.||+++|.+||+|.+.....+...-.+..+...++..|||++.+|...+....+ ...+.+++.|
T Consensus 420 ~i~~a~~wL~~~Q~~~G~f~e~g~~~~~~~~gg~~~~~~~~~ltAyvliaL~e~~~~~~~~~~~~~~~~~~~~i~ka~~~ 499 (767)
T 4fxk_B 420 KLQETSNWLLSQQQADGSFQDPCPVLDRSMQGGLVGNDETVALTAFVTIALHHGLAVFQDEGAEPLKQRVEASISKANSF 499 (767)
T ss_dssp HHHHHHHHHHHTBCTTSCBCCSSCSCCCCCCSSTTTHHHHHHHHHHHHHHHHHHHTTSTTCCCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcccchhcchhcchhhcCCcCCCccchhHHHHHHHHHHhcCCccccchhhhhHhHHHHHHHHHHHH
Confidence 899999999999999999987543322111111011124578999999999876543211 1357788888
Q ss_pred HHhc
Q 026485 186 LINS 189 (238)
Q Consensus 186 L~~~ 189 (238)
|.++
T Consensus 500 L~~~ 503 (767)
T 4fxk_B 500 LGEK 503 (767)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8653
No 38
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*
Probab=98.93 E-value=3.3e-09 Score=93.45 Aligned_cols=125 Identities=14% Similarity=0.070 Sum_probs=88.2
Q ss_pred hHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHhcccCCCC-cccccccchhhhHHHHHHHHHcccc---CccHHH
Q 026485 41 CTASALKAMTLFKKLYPKHRTKEVKNFIAKATKFIEDIQKSDGSW-YGSWGICFTYAAWFAISGLVAAKKT---YSNCLA 116 (238)
Q Consensus 41 ~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~~dG~w-~~~~~~~~~~~T~~al~aL~~~g~~---~~~~~~ 116 (238)
-.+.++.||+..+..+ ..+.+..|+..|..+ +| .+.+ ..+-.||.+++||..++.. ......
T Consensus 138 q~sL~vLALC~~g~~v-----------~~~~v~~Ll~~~~~~-~~~~g~~--~sVDT~AMA~lAL~C~~~~~~~~~~~~~ 203 (414)
T 2bb6_A 138 QYSLGILALCVHQKRV-----------HDSVVGKLLYAVEHK-PHLLQDH--VSVDTMAMAGMAFSCLELSNLNPKQRNR 203 (414)
T ss_dssp HHHHHHHHHHHTTCCC-----------CHHHHHHHHHHHHSS-SCSCCTT--THHHHHHHHHHHHHHHHHHTSCGGGHHH
T ss_pred HHHHHHHHHHHcCCCc-----------cHHHHHHHHHHhhcc-CcCCCCc--ccccHHHHHHHHHHHHhhcCCCcchHHH
Confidence 4677788888776432 233566677766543 33 2222 2455788999999877653 123566
Q ss_pred HHHHH----HHHHhccccCCCCCCCCCCCCCCcccCCCCCCCCHHHHHHHHHHHHHhCCCCCCh-HHHHHHHHHHHhccc
Q 026485 117 IRKAT----DFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMERDP-TPLHRAAKLLINSQL 191 (238)
Q Consensus 117 i~~a~----~~L~~~Q~~dGgw~~~~~~~~~~~y~~~~~~~~~~~~Ta~al~aL~~~g~~~~~~-~~v~~a~~~L~~~Q~ 191 (238)
+++|+ ++|++.|++||+||. ++.|+.|+.||...+..+... -...+++++|++ |.
T Consensus 204 i~~al~~l~~~l~~~Q~~dG~FGN-------------------~~ST~lA~QAL~~~~~~~~~~~w~~~~a~~~Ll~-q~ 263 (414)
T 2bb6_A 204 INLALKRVQEKILKAQTPEGYFGN-------------------VYSTPLALQLLMGSLRPSVELGTACLKAKAALQA-SL 263 (414)
T ss_dssp HHHHHHHHHHHHHHTBCTTSCBSS-------------------TTTHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHHhhcCCCCccc-------------------hhhHHHHHHHHHhcCCCcccccchHHHHHHHHHH-hc
Confidence 77777 778888999999974 356999999999987754321 267789999999 99
Q ss_pred CCCCCCCC
Q 026485 192 EDGDFPQQ 199 (238)
Q Consensus 192 ~dGgw~~~ 199 (238)
+||+|...
T Consensus 264 ~dG~F~np 271 (414)
T 2bb6_A 264 QHKTFQNP 271 (414)
T ss_dssp TTTCCCSH
T ss_pred cCCCCCCh
Confidence 99999843
No 39
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*
Probab=98.89 E-value=7.1e-09 Score=90.84 Aligned_cols=121 Identities=12% Similarity=0.113 Sum_probs=90.3
Q ss_pred hHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHhcccCCCCcccccccchhhhHHHHHHHHHccc---cC---c--
Q 026485 41 CTASALKAMTLFKKLYPKHRTKEVKNFIAKATKFIEDIQKSDGSWYGSWGICFTYAAWFAISGLVAAKK---TY---S-- 112 (238)
Q Consensus 41 ~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~~dG~w~~~~~~~~~~~T~~al~aL~~~g~---~~---~-- 112 (238)
--+.++.||+..+. ++-.+.+.-|+..|+.||++. .+-.+|.+++||.-+.. .. .
T Consensus 116 q~sL~vLALC~~~~-----------~v~~~~v~kLl~~~~~~g~~~------sVDT~AMa~LAL~C~~~~~~~~~~~~~~ 178 (399)
T 2pmv_A 116 GPSLAILALCQKNS-----------EATLPIAVRFAKTLLANSSPF------NVDTGAMATLALTCMYNKIPVGSEEGYR 178 (399)
T ss_dssp HHHHHHHHHHHHCH-----------HHHHHHHHHHHHHHHHCCSCC------CHHHHHHHHHHHHHHHTBCCTTCCSSHH
T ss_pred hHHHHHHHHHhcCC-----------CCCHHHHHHHHHHHHccCCcc------cchHHHHHHHHHHHHhhccccccchhhH
Confidence 35667777776653 245666777777788886552 45567888888876554 11 1
Q ss_pred --cHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcccCCCCCCCCHHHHHHHHHHHHHhCCCCCChH-HHHHHHHHHHhc
Q 026485 113 --NCLAIRKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMERDPT-PLHRAAKLLINS 189 (238)
Q Consensus 113 --~~~~i~~a~~~L~~~Q~~dGgw~~~~~~~~~~~y~~~~~~~~~~~~Ta~al~aL~~~g~~~~~~~-~v~~a~~~L~~~ 189 (238)
...++++++++|++.|++||+||. .+.|+.|+.||...+..+.. + ...++++||+.
T Consensus 179 ~~i~~ai~~~~~~l~~~q~~dG~fGn-------------------~yST~LA~QAL~~~~~~~~~-~W~c~~al~~l~~- 237 (399)
T 2pmv_A 179 SLFGQVLKDIVEKISMKIKDNGIIGD-------------------IYSTGLAMQALSVTPEPSKK-EWNCKKTTDMILN- 237 (399)
T ss_dssp HHHHHHHHHHHHHHTTSBCTTSCBSS-------------------HHHHHHHHHHHHHCSSCCSS-CCCHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHhhcCCCcccc-------------------cccHHHHHHHHHhcCCCccc-cccHHHHHHHHHH-
Confidence 367788999999999999999964 68999999999999874321 2 57889999999
Q ss_pred ccCCCCCCCC
Q 026485 190 QLEDGDFPQQ 199 (238)
Q Consensus 190 Q~~dGgw~~~ 199 (238)
|.+||+|...
T Consensus 238 q~~~G~F~np 247 (399)
T 2pmv_A 238 EIKQGKFHNP 247 (399)
T ss_dssp HHTTTTTCSH
T ss_pred HhhCCCcCCH
Confidence 9999999843
No 40
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}
Probab=98.73 E-value=1.4e-07 Score=96.82 Aligned_cols=124 Identities=14% Similarity=0.176 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHHHhcccCCCCccccc--ccchhhhHHHHHHHHHccccC-ccHHHHHHHHHHHHh-ccccCCCCCCCCC
Q 026485 64 VKNFIAKATKFIEDIQKSDGSWYGSWG--ICFTYAAWFAISGLVAAKKTY-SNCLAIRKATDFLLK-IQCEDGGWGESYR 139 (238)
Q Consensus 64 ~~~~i~~a~~~L~~~Q~~dG~w~~~~~--~~~~~~T~~al~aL~~~g~~~-~~~~~i~~a~~~L~~-~Q~~dGgw~~~~~ 139 (238)
....|+.++.-++.+|++||+| +-|+ .+.++.|++++..|..+.... .....+++|++||.+ .|.+||.|.+...
T Consensus 1044 ~~~~i~~g~~r~l~~q~~dGsf-s~w~~~~~s~wLTAyv~~~l~~A~~~~~v~~~~l~~a~~~L~~~~q~~~g~f~~~~~ 1122 (1661)
T 2b39_A 1044 SLELIRKGYTQQLAFRQKSSAY-AAFQYRPPSTWLTAYVVKVFALAANLIAIDSKDLCETVKWLILEKQKPDGIFQEDGP 1122 (1661)
T ss_dssp HHHHHHHHHHHHHTTBCTTSCB-CSSTTSCCCHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHTBCTTSCBCCCSC
T ss_pred HHHHHHHHHHHHHHhhcCCCCc-cccCCCCCchhhhHHHHHHHHhhhhcccCCHHHHHHHHHHhhHhhCCCCCccccccc
Confidence 4467888999999999999999 4554 356899999999999876532 257889999999995 9999999976432
Q ss_pred CCCCCcccC-CCC-CCCCHHHHHHHHHHHHHhCCC-----CCChHHHHHHHHHHHhc
Q 026485 140 SCPNKKYIP-LDG-NRSNLVQTAWAMMSLIHAGQM-----ERDPTPLHRAAKLLINS 189 (238)
Q Consensus 140 ~~~~~~y~~-~~~-~~~~~~~Ta~al~aL~~~g~~-----~~~~~~v~~a~~~L~~~ 189 (238)
..+. ...+ ..+ ..+++..|||+|.+|...+.. ......+.++++||.++
T Consensus 1123 ~~~~-~~~gg~~~~~~~~~~ltAyvl~aL~~~~~~~~~~~~~~~~~i~~a~~yL~~~ 1178 (1661)
T 2b39_A 1123 VIHQ-EMIGGFRDTREKDVSLTAFVLIALHEAKDICEAQVNSLGRSIAKAGDFLENH 1178 (1661)
T ss_dssp CCCT-TSCCCTTCCTTSSHHHHHHHHHHHHHTTTTTTTTCSSHHHHHHHHHHHHHHH
T ss_pred eech-hhcCCccccccCccccHHHHHHHHHhccccccccCcchhHHHHHHHHHHHHh
Confidence 2211 1110 001 123678899999999988653 11234788999999775
No 41
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*
Probab=98.73 E-value=1.2e-09 Score=111.22 Aligned_cols=125 Identities=15% Similarity=0.189 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhcccCCCCccccc--ccchhhhHHHHHHHHHccccC--ccHHHHHHHHHHHHh-ccccCCCCCCCC
Q 026485 64 VKNFIAKATKFIEDIQKSDGSWYGSWG--ICFTYAAWFAISGLVAAKKTY--SNCLAIRKATDFLLK-IQCEDGGWGESY 138 (238)
Q Consensus 64 ~~~~i~~a~~~L~~~Q~~dG~w~~~~~--~~~~~~T~~al~aL~~~g~~~--~~~~~i~~a~~~L~~-~Q~~dGgw~~~~ 138 (238)
....|+.++.-++++|++|||| +.|+ ...++.||+++..|..+.+.. -++..+.++++||++ +|++||+|.+..
T Consensus 1028 a~~~i~~Gyqr~l~yq~~DGsf-s~w~~~~~stWLTAyV~k~f~~A~~~i~~Vd~~~l~~~~~wL~~~~Q~~dG~F~e~~ 1106 (1642)
T 3prx_B 1028 AVNQIVTGYAQQMVYKKADHSY-AAFTNRASSSWLTAYVVKVFAMAAKMVAGISHEIICGGVRWLILNRQQPDGAFKENA 1106 (1642)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhcCCCCCe-ecCCCCCCccccHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhhccCCCCcccccc
Confidence 3457888899999999999999 4564 356889999999999876532 246789999999998 899999998765
Q ss_pred CCCCCCcccCCCCCCCCHHHHHHHHHHHHHhCCCC-----CChHHHHHHHHHHHhc
Q 026485 139 RSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQME-----RDPTPLHRAAKLLINS 189 (238)
Q Consensus 139 ~~~~~~~y~~~~~~~~~~~~Ta~al~aL~~~g~~~-----~~~~~v~~a~~~L~~~ 189 (238)
...+..+-.+..+...++..|||++.||+.++... ....++.+|+.||.++
T Consensus 1107 ~v~~~~m~Gg~~~~~~~~~lTA~vliaL~e~~~~~~~~~~~~~~~i~~a~~~L~~~ 1162 (1642)
T 3prx_B 1107 PVLSGTMQGGIQGAEEEVYLTAFILVALLESKTICNDYVNSLDSSIKKATNYLLKK 1162 (1642)
T ss_dssp --------------------------------------------------------
T ss_pred cccchhccCCccCCCCcccchHHHHHHHHhcccccccccccchHHHHHHHHHHHHh
Confidence 44322211111112357889999999999886421 1123899999999864
No 42
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A
Probab=98.48 E-value=3.6e-07 Score=94.02 Aligned_cols=121 Identities=22% Similarity=0.302 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHHhcccCCCCccccc--ccchhhhHHHHHHHHHccccC-ccHHHHHHHHHHHHh-ccccCCCCCCCCC
Q 026485 64 VKNFIAKATKFIEDIQKSDGSWYGSWG--ICFTYAAWFAISGLVAAKKTY-SNCLAIRKATDFLLK-IQCEDGGWGESYR 139 (238)
Q Consensus 64 ~~~~i~~a~~~L~~~Q~~dG~w~~~~~--~~~~~~T~~al~aL~~~g~~~-~~~~~i~~a~~~L~~-~Q~~dGgw~~~~~ 139 (238)
....|+.++.-++++|++||+| +-|. .+.++.|++++..|..+.... ..+..+++|++||.+ +|.+||.|.+...
T Consensus 1045 ~~~~i~~g~~r~l~~q~~dGsf-s~w~~~~~s~wLTAyv~~~l~~A~~~~~v~~~~l~~a~~~L~~~~q~~~g~f~~~~~ 1123 (1676)
T 3cu7_A 1045 LKKKLKEGMLSIMSYRNADYSY-SVWKGGSASTWLTAFALRVLGQVNKYVEQNQNSICNSLLWLVENYQLDNGSFKENSQ 1123 (1676)
T ss_dssp HHHHHHHHHHHGGGGBCTTSCB-CSSSSSCCCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHSBCTTSCBCCCSS
T ss_pred HHHHHHHHHHHHhhccCCCCCc-cccCCCCCcEEEeHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhCCCCCcccCCcc
Confidence 3456778888888999999999 4553 356899999999999876532 256889999999999 9999999976432
Q ss_pred CCCCCcccCCCCCC------CCHHHHHHHHHHHHHhCCC-C--CChHHHHHHHHHHHhc
Q 026485 140 SCPNKKYIPLDGNR------SNLVQTAWAMMSLIHAGQM-E--RDPTPLHRAAKLLINS 189 (238)
Q Consensus 140 ~~~~~~y~~~~~~~------~~~~~Ta~al~aL~~~g~~-~--~~~~~v~~a~~~L~~~ 189 (238)
..+ ... .++. +++..|||+|.+|...+.. . .....+.++++||.++
T Consensus 1124 ~~~-~~~---~gg~~~~~~~~~~~ltAyvl~aL~~~~~~~~~~~~~~~i~~a~~yL~~~ 1178 (1676)
T 3cu7_A 1124 YQP-IKL---QGTLPVEARENSLYLTAFTVIGIRKAFDICPLVKIDTALIKADNFLLEN 1178 (1676)
T ss_dssp CCC-CCC---CSCHHHHHHHHHHHHHHHHHHHHHHTGGGSCCHHHHHHHHHHHHHHHHH
T ss_pred ccc-hhh---cCCcccccccCccccHHHHHHHHHhcccccCCcccHHHHHHHHHHHHHh
Confidence 221 111 1221 2567899999999887543 1 1123677788888654
No 43
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=97.38 E-value=0.0004 Score=65.46 Aligned_cols=82 Identities=17% Similarity=0.317 Sum_probs=56.2
Q ss_pred ccchhhhHHHHHHHHHccccCccHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcccCCCCCCCCHHHHHHHHHHHHHhC
Q 026485 91 ICFTYAAWFAISGLVAAKKTYSNCLAIRKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAG 170 (238)
Q Consensus 91 ~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~dGgw~~~~~~~~~~~y~~~~~~~~~~~~Ta~al~aL~~~g 170 (238)
...+|.||.+ |+.- .. ...+.-.+.++||+++|++||+||...... ....+..|.-|++||..-+
T Consensus 31 S~S~YDTAWV--Amvp--~~-~~~p~Fp~~~~wil~nQ~~DGsWG~~~~~~----------~~D~ll~TLAcvlAL~~w~ 95 (727)
T 3pya_A 31 TISAYDTAWV--ALID--AG-DKTPAFPSAVKWIAENQLSDGSWGDAYLFS----------YHDRLINTLACVVALRSWN 95 (727)
T ss_dssp CCCHHHHHHH--HTCB--CS-SSSBSCHHHHHHHHHTCCTTSCCSCSSSCC----------HHHHHHHHHHHHHHHHHTT
T ss_pred cCcHHHhHHH--hhcc--CC-CCCCCCHHHHHHHHhcCCCCCCCCCCCCcc----------hhhHHHHHHHHHHHHHHcc
Confidence 3578999885 3332 11 122335688999999999999998631000 0123679999999999865
Q ss_pred CCCCChHHHHHHHHHHHhcc
Q 026485 171 QMERDPTPLHRAAKLLINSQ 190 (238)
Q Consensus 171 ~~~~~~~~v~~a~~~L~~~Q 190 (238)
.. +..++||+.||.++-
T Consensus 96 ~~---~~~i~rGl~fl~~nl 112 (727)
T 3pya_A 96 LF---PHQCNKGITFFRENI 112 (727)
T ss_dssp CC---HHHHHHHHHHHHHHG
T ss_pred CC---HHHHHHHHHHHHHHH
Confidence 43 358999999998854
No 44
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=97.33 E-value=0.00052 Score=65.36 Aligned_cols=84 Identities=15% Similarity=0.247 Sum_probs=56.4
Q ss_pred ccchhhhHHHHHHHHHccccCccHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcccCCCCCCCCHHHHHHHHHHHHHhC
Q 026485 91 ICFTYAAWFAISGLVAAKKTYSNCLAIRKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAG 170 (238)
Q Consensus 91 ~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~dGgw~~~~~~~~~~~y~~~~~~~~~~~~Ta~al~aL~~~g 170 (238)
...+|.||.+ |+.-.-.. ...+...+.++||+++|++||+||..... .....+..|.-|++||..-.
T Consensus 53 S~S~YDTAWV--amvp~~~~-~~~p~Fp~~~~wil~nQ~~DGsWg~~~~~----------~~~d~l~~TlAcvlAL~~w~ 119 (785)
T 3s9v_A 53 NPSAYDTAWV--ARIPAVDG-SDNPHFPETVEWILQNQLKDGSWGEGFYF----------LAYDRILATLACIITLTLWR 119 (785)
T ss_dssp CCCHHHHHHH--TTSBCTTS-CSSBSSHHHHHHHHHCCCTTSCCSCSSSC----------CHHHHHHHHHHHHHHHHHTT
T ss_pred cCcHHHhhHH--hccccCCC-CCCCCchHHHHHHHHccCCCCCCCCCCCC----------chHHHHHHHHHHHHHHHHcc
Confidence 3578899885 33211111 12234568899999999999999863110 00123779999999999865
Q ss_pred CCCCChHHHHHHHHHHHhcc
Q 026485 171 QMERDPTPLHRAAKLLINSQ 190 (238)
Q Consensus 171 ~~~~~~~~v~~a~~~L~~~Q 190 (238)
.. +..|+||++||.++-
T Consensus 120 ~~---~~~i~~Gl~fl~~nl 136 (785)
T 3s9v_A 120 TG---ETQVQKGIEFFRTQA 136 (785)
T ss_dssp CC---HHHHHHHHHHHHHHH
T ss_pred cC---HHHHHHHHHHHHHHH
Confidence 43 358999999998754
No 45
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=97.28 E-value=0.00045 Score=66.06 Aligned_cols=85 Identities=18% Similarity=0.196 Sum_probs=57.1
Q ss_pred ccchhhhHHHHHHHHHccccCccHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcccCCCCCCCCHHHHHHHHHHHHHhC
Q 026485 91 ICFTYAAWFAISGLVAAKKTYSNCLAIRKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAG 170 (238)
Q Consensus 91 ~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~dGgw~~~~~~~~~~~y~~~~~~~~~~~~Ta~al~aL~~~g 170 (238)
...+|.||.+ |+.-.-.. ...+.....++||+++|++||+||..... .....+..|.-|++||..-.
T Consensus 80 S~S~YDTAWV--Amvp~~~~-~~~p~Fp~~~~wil~nQ~~DGsWg~~~~~----------~~~d~ll~TlAcvlAL~~w~ 146 (817)
T 3sdr_A 80 TPSAYDTAWV--ARVPAIDG-SARPQFPQTVDWILKNQLKDGSWGIQSHF----------LLSDRLLATLSCVLVLLKWN 146 (817)
T ss_dssp CCCHHHHHHH--HTCBCTTS-CSSBSSHHHHHHHHHCCCTTSCCSCTTCC----------CHHHHHHHHHHHHHHHHHTT
T ss_pred ccCHHHhhHH--heeecCCC-CCCCCchHHHHHHHHccCCCCCCCCCCCc----------chHHHHHHHHHHHHHHHHcc
Confidence 3568999884 33221111 12234568899999999999999863110 00124778999999999865
Q ss_pred CCCCChHHHHHHHHHHHhccc
Q 026485 171 QMERDPTPLHRAAKLLINSQL 191 (238)
Q Consensus 171 ~~~~~~~~v~~a~~~L~~~Q~ 191 (238)
.. +..|+||+.||.++-.
T Consensus 147 ~~---~~~i~~Gl~fl~~nl~ 164 (817)
T 3sdr_A 147 VG---DLQVEQGIEFIKSNLE 164 (817)
T ss_dssp CC---HHHHHHHHHHHHHHHT
T ss_pred CC---HHHHHHHHHHHHHHHH
Confidence 43 3589999999988543
No 46
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=97.24 E-value=0.0005 Score=65.34 Aligned_cols=84 Identities=15% Similarity=0.205 Sum_probs=56.9
Q ss_pred ccchhhhHHHHHHHHHcc--ccCccHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcccCCCCCCCCHHHHHHHHHHHHH
Q 026485 91 ICFTYAAWFAISGLVAAK--KTYSNCLAIRKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIH 168 (238)
Q Consensus 91 ~~~~~~T~~al~aL~~~g--~~~~~~~~i~~a~~~L~~~Q~~dGgw~~~~~~~~~~~y~~~~~~~~~~~~Ta~al~aL~~ 168 (238)
...+|.||.+ |+.-.- .. ...+..-..++||+++|++||+|+..... .....+..|.-|++||..
T Consensus 30 S~S~YDTAWV--amvp~~~~~~-~~~p~Fp~~~~wil~nQ~~DGsWg~~~~~----------~~~d~ll~TlAcvlAL~~ 96 (764)
T 3p5p_A 30 SPSAYDTAWV--ARLATISSDG-SEKPRFPQALNWVFNNQLQDGSWGIESHF----------SLCDRLLNTTNSVIALSV 96 (764)
T ss_dssp CCCHHHHHHH--HHCEEECTTS-CEEESCHHHHHHHHHCCCTTSCCSCTTSC----------CHHHHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHH--HhCccccCCC-CCCCCChHHHHHHHHccCCCCCCCCCCCc----------chHHHHHHHHHHHHHHHH
Confidence 4578999884 333211 11 11234568899999999999999853110 001247799999999998
Q ss_pred hCCCCCChHHHHHHHHHHHhcc
Q 026485 169 AGQMERDPTPLHRAAKLLINSQ 190 (238)
Q Consensus 169 ~g~~~~~~~~v~~a~~~L~~~Q 190 (238)
-... +..|+||++||.++-
T Consensus 97 w~~~---~~~i~~Gl~fl~~nl 115 (764)
T 3p5p_A 97 WKTG---HSQVQQGAEFIAENL 115 (764)
T ss_dssp TTCC---HHHHHHHHHHHHHHH
T ss_pred ccCC---HHHHHHHHHHHHHHH
Confidence 6543 358999999998854
No 47
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A
Probab=97.04 E-value=0.017 Score=50.48 Aligned_cols=180 Identities=12% Similarity=0.160 Sum_probs=103.1
Q ss_pred chHHHHHHHHHHHHhhCCCcchHH-HHHHHHHHHHHHHHhcc-cCCCCccccc-------ccchh--hhHHHHHHHHHcc
Q 026485 40 ECTASALKAMTLFKKLYPKHRTKE-VKNFIAKATKFIEDIQK-SDGSWYGSWG-------ICFTY--AAWFAISGLVAAK 108 (238)
Q Consensus 40 d~Ta~~l~aL~~~~~~~~~~~~~~-~~~~i~~a~~~L~~~Q~-~dG~w~~~~~-------~~~~~--~T~~al~aL~~~g 108 (238)
|.-.+++..|..+++... +++ ++.+++....+....+. ++|.|.-.|. ....+ +-+-++.+|...-
T Consensus 170 Dgl~M~~p~La~~~~~tg---d~~y~d~A~~q~~~~~~~l~D~~tGl~~h~~~~~~~~~~~~~~WaRG~gW~~~gl~~~l 246 (382)
T 3pmm_A 170 DTLMMTVLPLAKIGKLLN---RPQYVEEATYQFLLHVQNLMDRETGLWFHGWNYEGRHNFARARWARGNSWLTMVIPDFL 246 (382)
T ss_dssp THHHHTHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHBCTTTSCBCSEEETTTTBCTTCCCBHHHHHHHHHHHHHHH
T ss_pred cchhhhHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHccCCCCCCeeeeccCCCCCCCCcceecccccHHHHHHHHHH
Confidence 334566667777776532 222 23556666666666674 5788854331 11122 3344555554322
Q ss_pred c----c--C----ccHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcccCCCCCCCCHHHHHHHHHHHHHh---CCCC-C
Q 026485 109 K----T--Y----SNCLAIRKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHA---GQME-R 174 (238)
Q Consensus 109 ~----~--~----~~~~~i~~a~~~L~~~Q~~dGgw~~~~~~~~~~~y~~~~~~~~~~~~Ta~al~aL~~~---g~~~-~ 174 (238)
. + . ...+..++.+++|++.|.+||.|...... +....+.+.||....+|+.. |..+ .
T Consensus 247 ~~l~~p~~~~~~~~~~~~~~~~a~~~~~~q~~~G~W~~~~d~---------~~~y~EsSatA~~ay~ll~~~~~g~l~~~ 317 (382)
T 3pmm_A 247 ELVDLPEGNAVRRYLITVLDAQIAALAECQDDSGLWHTLLDD---------PHSYLEASATAGFAYGILKAVRKRYVGQH 317 (382)
T ss_dssp HHHCCCTTCHHHHHHHHHHHHHHHHHHHHCCTTSCEESBTTC---------TTSCEEHHHHHHHHHHHHHHHHTTSSCGG
T ss_pred HhhcCCcchhhHHHHHHHHHHHHHHHHHcCCCCCChhhccCC---------CCCCccccHHHHHHHHHHHHHHcCCCcHH
Confidence 1 1 1 13356788899999999999999743211 11223567777766666543 2221 1
Q ss_pred ChHHHHHHHHHHHhcccCCCCCCCCccccccCCc--c-cccc----CCchhhHHHHHHHHHHHhc
Q 026485 175 DPTPLHRAAKLLINSQLEDGDFPQQELTGVFMEN--C-MLHY----PIYRNIFPMWALAEYRSRL 232 (238)
Q Consensus 175 ~~~~v~~a~~~L~~~Q~~dGgw~~~~~~~~~~~~--~-~~~~----~~~~~~~~l~aL~~~~~~~ 232 (238)
-.+.++|+++-|+++-.+||.....+. |+-.+. - |++. ..+-....|+|+..+.+.+
T Consensus 318 Y~~~a~ka~~~l~~~i~~dG~l~~v~~-gt~~g~~~~~Y~~~p~~~~~~G~~~~lla~~e~~~~~ 381 (382)
T 3pmm_A 318 YAGVAEKAIRGIVQNISPQGELLQTSF-GTGMGSDLDFYRQIPLTSMPYGQAMAILCLTEYLRKY 381 (382)
T ss_dssp GHHHHHHHHHHHHHTBCTTSCBCSCBC-CCCCCSSHHHHHTCCBCCCHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHhhCCCCCCEeCeec-CCCCCCChhhhhcccCCCCCccHHHHHHHHHHHHHhh
Confidence 135899999999999889997654432 332211 1 2222 2355688899998887643
No 48
>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482}
Probab=96.77 E-value=0.077 Score=47.28 Aligned_cols=186 Identities=15% Similarity=0.170 Sum_probs=98.0
Q ss_pred chHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHhcc-cCCCCcccccc------cchh--hhHHHHHHHHHc---
Q 026485 40 ECTASALKAMTLFKKLYPKHRTKEVKNFIAKATKFIEDIQK-SDGSWYGSWGI------CFTY--AAWFAISGLVAA--- 107 (238)
Q Consensus 40 d~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~-~dG~w~~~~~~------~~~~--~T~~al~aL~~~--- 107 (238)
|.-.+++.-|+.+++...+.+..-++.++.....+....+. ++|-|.-.|.. ...+ +-+-++.+|..+
T Consensus 202 D~lyM~~pfla~~~~~tgd~~~~y~d~A~~q~~~~~~~l~D~~tGL~~Hg~~~~~~~~~~~~WaRGnGW~~~gl~~~l~~ 281 (445)
T 3k11_A 202 DDMFMGIPAVAQMSRYDKEAKNKYLAEAVKQFLQFADRMFIPEKGLYRHGWVESSTDHPAFCWARANGWALLTACELLDV 281 (445)
T ss_dssp HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHEETTTTEECSEEETTCSSCCCCCBHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHCCcchHHHHHHHHHHHHHHHhcccCCCCCEeeeecCCCCCCCcceecccchHHHHHHHHHHHh
Confidence 33446777777777652211100134455555555555554 46777533321 1122 334455555432
Q ss_pred -cccCc----cHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcccCCCCCCCCHHHHHHHHHHHHHh---CCCCC--ChH
Q 026485 108 -KKTYS----NCLAIRKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHA---GQMER--DPT 177 (238)
Q Consensus 108 -g~~~~----~~~~i~~a~~~L~~~Q~~dGgw~~~~~~~~~~~y~~~~~~~~~~~~Ta~al~aL~~~---g~~~~--~~~ 177 (238)
....+ ..+..++.++.|++.|.+||.|...... ++...+.+.||....+|+.. |..+. -.+
T Consensus 282 lp~~~~~r~~l~~~~~~~a~~l~~~Q~~~G~W~~vld~---------~~~y~EsSaTAmfaygllkgvr~G~Ld~~~Y~~ 352 (445)
T 3k11_A 282 LPEDYPQRPKVMDYFRAHVRGVTALQSGEGFWHQLLDC---------NDSYLETSATAIYVYCLAHAINKGWIDAIAYGP 352 (445)
T ss_dssp SCTTCTTHHHHHHHHHHHHHHHHTTCCTTSCEESBTTC---------TTSCEEHHHHHHHHHHHHHHHHHTSSCHHHHHH
T ss_pred cccccccHHHHHHHHHHHHHHHHHhCCCCCchhhccCC---------CCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 22211 2366788899999999999999743211 12234566676666666443 43321 124
Q ss_pred HHHHHHHHHHhcccCCCCCCCCccc-cccCC-ccccccCCc-----hhhHHHHHHHHHHHhccC
Q 026485 178 PLHRAAKLLINSQLEDGDFPQQELT-GVFME-NCMLHYPIY-----RNIFPMWALAEYRSRLLL 234 (238)
Q Consensus 178 ~v~~a~~~L~~~Q~~dGgw~~~~~~-~~~~~-~~~~~~~~~-----~~~~~l~aL~~~~~~~~~ 234 (238)
.++|+++-|+++-++||.-...+.. |.-.. ..|+..+.. -..-.|+|...+.+.+..
T Consensus 353 ~A~ka~~~L~~~i~~dG~l~~v~~gtg~g~d~~~Y~~~p~~~~d~~G~G~fllA~~E~~~l~~~ 416 (445)
T 3k11_A 353 VAQLGWHAVAGKINEEGQVEGTCVGTGMAFDPAFYYYRPVNVYAAHGYGPVLWAGAEMIRLLNT 416 (445)
T ss_dssp HHHHHHHHHHTTBCTTSCBCSCBCCCCCCSSHHHHHTCCBCTTCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCEeceeeccCCCCCchhhccCcccCCCCccHHHHHHHHHHHHHHhcc
Confidence 7899999999988899865433221 11111 123333221 134456777766665443
No 49
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=96.59 E-value=0.0029 Score=59.67 Aligned_cols=58 Identities=21% Similarity=0.179 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHhcccCCCCcccccc---cchhhhHHHHHHHHHccccCccHHHHHHHHHHHHhc
Q 026485 67 FIAKATKFIEDIQKSDGSWYGSWGI---CFTYAAWFAISGLVAAKKTYSNCLAIRKATDFLLKI 127 (238)
Q Consensus 67 ~i~~a~~~L~~~Q~~dG~w~~~~~~---~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~ 127 (238)
...++++||+..|.+||+|+..-.. ...-.|..+|.||...+.. ...|+|++.||.++
T Consensus 51 ~Fp~~~~wil~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~~~---~~~i~rGl~fl~~n 111 (727)
T 3pya_A 51 AFPSAVKWIAENQLSDGSWGDAYLFSYHDRLINTLACVVALRSWNLF---PHQCNKGITFFREN 111 (727)
T ss_dssp SCHHHHHHHHHTCCTTSCCSCSSSCCHHHHHHHHHHHHHHHHHTTCC---HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHccCC---HHHHHHHHHHHHHH
Confidence 3567899999999999999643210 1234788899999887653 46899999999875
No 50
>1nc5_A Hypothetical protein YTER; structural genomics, helix barrel, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: a.102.1.6 PDB: 2d8l_A* 2gh4_A*
Probab=96.55 E-value=0.11 Score=45.17 Aligned_cols=184 Identities=13% Similarity=0.094 Sum_probs=98.7
Q ss_pred chHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHH-HHHhc-ccCCCCcccccc--------------cchh--hhHHHH
Q 026485 40 ECTASALKAMTLFKKLYPKHRTKEVKNFIAKATKF-IEDIQ-KSDGSWYGSWGI--------------CFTY--AAWFAI 101 (238)
Q Consensus 40 d~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~~a~~~-L~~~Q-~~dG~w~~~~~~--------------~~~~--~T~~al 101 (238)
|....++..|..+++... +++..+...+.+++ +...+ .++|-|.-.|.. ...+ +-+-++
T Consensus 143 D~l~m~~p~L~~l~~~tg---d~~y~d~A~~~~~~~~~~l~D~~tGl~~h~~~~~~~~~w~d~~tg~~~~~WaRg~gW~~ 219 (373)
T 1nc5_A 143 DGLYMGGPFALKYANLKQ---ETELFDQVVLQESLMRKHTKDAKTGLFYHAWDEAKKMPWANEETGCSPEFWARSIGWYV 219 (373)
T ss_dssp HHHHHHHHHHHHHHHHHT---CTHHHHHHHHHHHHHHHHHBCTTTSCBCSEEETTCCSTTSCTTTCBCSCCBHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHhcCCCCCCEEeecCCccccccccccCCCCCCcccchHhHHH
Confidence 333456777777765422 12233333333333 34445 346777432221 1111 345567
Q ss_pred HHHHHcccc-C-------ccHHHHHHHHHHHHhcccc-CCCCCCCCCCCCCCcccCCCCCCCCHHHHHHHHHHHHHh---
Q 026485 102 SGLVAAKKT-Y-------SNCLAIRKATDFLLKIQCE-DGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHA--- 169 (238)
Q Consensus 102 ~aL~~~g~~-~-------~~~~~i~~a~~~L~~~Q~~-dGgw~~~~~~~~~~~y~~~~~~~~~~~~Ta~al~aL~~~--- 169 (238)
.+|..+-.. + ...+..++.+++|++.|.+ ||.|..... .+.+ ++...+.+.||....+|+..
T Consensus 220 ~gl~~~l~~lp~~~~~~~~~~~~~~~~a~~l~~~q~~~dG~W~~~ld---~~~~---~~~~~EsSatA~~ay~l~~g~~~ 293 (373)
T 1nc5_A 220 MSLADMIEELPKKHPNRHVWKNTLQDMIKSICRYQDKETGLWYQIVD---KGDR---SDNWLESSGSCLYMYAIAKGINK 293 (373)
T ss_dssp HHHHHHGGGSCTTCHHHHHHHHHHHHHHHHHHTTSCTTTSCCBSBTT---CTTS---TTCCBCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHhcCCCCCceeeecC---CCCC---CCCCccccHHHHHHHHHHHHHHC
Confidence 777654322 1 1335667889999999997 999873211 0000 12335677777777776653
Q ss_pred CCCC-CChHHHHHHHHHHHhc---ccCCCCC--CCCccccccCCcc--ccccC-----CchhhHHHHHHHHHHHhcc
Q 026485 170 GQME-RDPTPLHRAAKLLINS---QLEDGDF--PQQELTGVFMENC--MLHYP-----IYRNIFPMWALAEYRSRLL 233 (238)
Q Consensus 170 g~~~-~~~~~v~~a~~~L~~~---Q~~dGgw--~~~~~~~~~~~~~--~~~~~-----~~~~~~~l~aL~~~~~~~~ 233 (238)
+..+ .-.+.++|+.+.|+++ ..+||.. ...+..+ ..... |++.+ .+-....|+|+..+.+.+.
T Consensus 294 g~l~~~Y~~~a~k~~~~l~~~~~~~~~dG~l~~~~~~~~~-~~~~~~yY~~~~~~~~d~~G~g~~lla~~e~~~~~~ 369 (373)
T 1nc5_A 294 GYLDRAYETTLLKAYQGLIQHKTETSEDGAFLVKDICVGT-SAGFYDYYVSRERSTNDLHGAGAFILAMTELEPLFR 369 (373)
T ss_dssp TSSCGGGHHHHHHHHHHHHHHHEEECTTSCEEECCEECSC-CSCCHHHHHTSCEESSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHhceeECCCCCEEecceEEeC-cCCCchhhhcccCCCCCcchHHHHHHHHHHHHHHHH
Confidence 3221 1235899999999884 4678843 3333323 12211 22222 2345788889888877653
No 51
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=96.54 E-value=0.003 Score=60.00 Aligned_cols=59 Identities=15% Similarity=0.117 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHhcccCCCCccccc---ccchhhhHHHHHHHHHccccCccHHHHHHHHHHHHhcc
Q 026485 67 FIAKATKFIEDIQKSDGSWYGSWG---ICFTYAAWFAISGLVAAKKTYSNCLAIRKATDFLLKIQ 128 (238)
Q Consensus 67 ~i~~a~~~L~~~Q~~dG~w~~~~~---~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q 128 (238)
...++++||+..|.+||+|+..-. ....-.|..+|.||...+.. ...|+|++.||.++-
T Consensus 54 ~Fp~~~~wil~nQ~~DGsWg~~~~~~~~d~ll~TlAcvlAL~~w~~~---~~~i~~Gl~fl~~nl 115 (764)
T 3p5p_A 54 RFPQALNWVFNNQLQDGSWGIESHFSLCDRLLNTTNSVIALSVWKTG---HSQVQQGAEFIAENL 115 (764)
T ss_dssp SCHHHHHHHHHCCCTTSCCSCTTSCCHHHHHHHHHHHHHHHHHTTCC---HHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHccCCCCCCCCCCCcchHHHHHHHHHHHHHHHHccCC---HHHHHHHHHHHHHHH
Confidence 456789999999999999964321 11234788899999887743 478999999997653
No 52
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A
Probab=96.51 E-value=0.054 Score=47.29 Aligned_cols=127 Identities=13% Similarity=0.077 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHhh--CCC-c-chHHHHHHHHHHHHHHHHhcccCCCCcccccc--c--chhhhHHHHHHHHHc---ccc
Q 026485 42 TASALKAMTLFKKL--YPK-H-RTKEVKNFIAKATKFIEDIQKSDGSWYGSWGI--C--FTYAAWFAISGLVAA---KKT 110 (238)
Q Consensus 42 Ta~~l~aL~~~~~~--~~~-~-~~~~~~~~i~~a~~~L~~~Q~~dG~w~~~~~~--~--~~~~T~~al~aL~~~---g~~ 110 (238)
.++++.+|...-+. .|. + ..+++.+.+++.++.|+++|.+||.|...... + .+.+|+..+.+|+.. |..
T Consensus 235 ~gW~~~gl~~~l~~l~~p~~~~~~~~~~~~~~~~a~~~~~~q~~~G~W~~~~d~~~~y~EsSatA~~ay~ll~~~~~g~l 314 (382)
T 3pmm_A 235 NSWLTMVIPDFLELVDLPEGNAVRRYLITVLDAQIAALAECQDDSGLWHTLLDDPHSYLEASATAGFAYGILKAVRKRYV 314 (382)
T ss_dssp HHHHHHHHHHHHHHHCCCTTCHHHHHHHHHHHHHHHHHHHHCCTTSCEESBTTCTTSCEEHHHHHHHHHHHHHHHHTTSS
T ss_pred ccHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHHHHHHHcCCCCCChhhccCCCCCCccccHHHHHHHHHHHHHHcCCC
Confidence 67777887775543 232 1 23456688999999999999999999632221 1 233566666666542 221
Q ss_pred -CccHHHHHHHHHHHHhccccCCCCCCCCCCC---CCCc-ccCCCCCCCCHHHHHHHHHHHHHh
Q 026485 111 -YSNCLAIRKATDFLLKIQCEDGGWGESYRSC---PNKK-YIPLDGNRSNLVQTAWAMMSLIHA 169 (238)
Q Consensus 111 -~~~~~~i~~a~~~L~~~Q~~dGgw~~~~~~~---~~~~-y~~~~~~~~~~~~Ta~al~aL~~~ 169 (238)
..+.++++|+++-|+++.++||..+...... .... |... ...+.++..+.+|+|+.+.
T Consensus 315 ~~~Y~~~a~ka~~~l~~~i~~dG~l~~v~~gt~~g~~~~~Y~~~-p~~~~~~G~~~~lla~~e~ 377 (382)
T 3pmm_A 315 GQHYAGVAEKAIRGIVQNISPQGELLQTSFGTGMGSDLDFYRQI-PLTSMPYGQAMAILCLTEY 377 (382)
T ss_dssp CGGGHHHHHHHHHHHHHTBCTTSCBCSCBCCCCCCSSHHHHHTC-CBCCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhhCCCCCCEeCeecCCCCCCChhhhhcc-cCCCCCccHHHHHHHHHHH
Confidence 2367899999999999999999876542111 0011 2111 1123678888888888754
No 53
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=96.50 E-value=0.0029 Score=60.27 Aligned_cols=58 Identities=19% Similarity=0.231 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHhcccCCCCccccc-c--cchhhhHHHHHHHHHccccCccHHHHHHHHHHHHhc
Q 026485 67 FIAKATKFIEDIQKSDGSWYGSWG-I--CFTYAAWFAISGLVAAKKTYSNCLAIRKATDFLLKI 127 (238)
Q Consensus 67 ~i~~a~~~L~~~Q~~dG~w~~~~~-~--~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~ 127 (238)
...++++||+..|.+||+|+..-. . ...-.|..+|.||...+.. ...|+|++.||.++
T Consensus 75 ~Fp~~~~wil~nQ~~DGsWg~~~~~~~~d~l~~TlAcvlAL~~w~~~---~~~i~~Gl~fl~~n 135 (785)
T 3s9v_A 75 HFPETVEWILQNQLKDGSWGEGFYFLAYDRILATLACIITLTLWRTG---ETQVQKGIEFFRTQ 135 (785)
T ss_dssp SSHHHHHHHHHCCCTTSCCSCSSSCCHHHHHHHHHHHHHHHHHTTCC---HHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHcccC---HHHHHHHHHHHHHH
Confidence 457889999999999999964211 1 1244788899999987643 46899999999765
No 54
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=96.50 E-value=0.0033 Score=60.19 Aligned_cols=58 Identities=17% Similarity=0.119 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHhcccCCCCccccc---ccchhhhHHHHHHHHHccccCccHHHHHHHHHHHHhc
Q 026485 67 FIAKATKFIEDIQKSDGSWYGSWG---ICFTYAAWFAISGLVAAKKTYSNCLAIRKATDFLLKI 127 (238)
Q Consensus 67 ~i~~a~~~L~~~Q~~dG~w~~~~~---~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~ 127 (238)
...++++||+..|.+||+|+..-. ....-.|..||.||...+.. ...|+|++.||.++
T Consensus 102 ~Fp~~~~wil~nQ~~DGsWg~~~~~~~~d~ll~TlAcvlAL~~w~~~---~~~i~~Gl~fl~~n 162 (817)
T 3sdr_A 102 QFPQTVDWILKNQLKDGSWGIQSHFLLSDRLLATLSCVLVLLKWNVG---DLQVEQGIEFIKSN 162 (817)
T ss_dssp SSHHHHHHHHHCCCTTSCCSCTTCCCHHHHHHHHHHHHHHHHHTTCC---HHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHccCCCCCCCCCCCcchHHHHHHHHHHHHHHHHccCC---HHHHHHHHHHHHHH
Confidence 457889999999999999964321 11234688899999987753 47899999999875
No 55
>1lf6_A Glucoamylase; (alpha/alpha) barrel, 6 alpha-helical hairpin torroid, super beta sandwich, carbohydrase family GH15; 2.10A {Thermoanaerobacteriumthermosaccharolyticum} SCOP: a.102.1.5 b.30.5.5 PDB: 1lf9_A*
Probab=95.51 E-value=0.22 Score=46.82 Aligned_cols=124 Identities=10% Similarity=0.193 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHhccc--CCCCcc----ccc----------ccc--hhhhHHHHHHHHHccccCccHHHHHHHHHHHHhc
Q 026485 66 NFIAKATKFIEDIQKS--DGSWYG----SWG----------ICF--TYAAWFAISGLVAAKKTYSNCLAIRKATDFLLKI 127 (238)
Q Consensus 66 ~~i~~a~~~L~~~Q~~--dG~w~~----~~~----------~~~--~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~ 127 (238)
+.+.+++.-|+..+.+ .|.+.. .|. -.+ +...++++++|..+|. .+..++.++||.+.
T Consensus 296 ~~~~rs~~~Lk~l~~~~~~G~iiAs~t~~~~e~~~~~~~~dY~~~W~RD~~~~~~al~~~G~----~~~a~~~l~~l~~~ 371 (684)
T 1lf6_A 296 SLYYNSMMILKASEDKTNKGAYIASLSIPWGDGQRDDNTGGYHLVWSRDLYHVANAFIAAGD----VDSANRSLDYLAKV 371 (684)
T ss_dssp HHHHHHHHHHHTTBCSSSTTCBCSCSSCTTGGGSBSBSCCGGGSBCHHHHHHHHHHHHHHTC----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCCccEEeecCCCCccccCCCCCCCCEEEeccHHHHHHHHHHHcCC----HHHHHHHHHHHHhh
Confidence 5677777777776653 677632 121 111 1256888999998874 35688999999999
Q ss_pred cccCCCCCCCCCCCCCCcccCCCCCCCCHHHHHHHHHHHHHhCCCCCChHH-HHHHHHHHHhccc--CCCCCCCC
Q 026485 128 QCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMERDPTP-LHRAAKLLINSQL--EDGDFPQQ 199 (238)
Q Consensus 128 Q~~dGgw~~~~~~~~~~~y~~~~~~~~~~~~Ta~al~aL~~~g~~~~~~~~-v~~a~~~L~~~Q~--~dGgw~~~ 199 (238)
|.++|.|...........| +......++..|.++....... .-+. ++++++|+.+.-. ..|-|.+.
T Consensus 372 q~~~G~~~~~~~~~G~p~w-----~~~Q~D~~g~~l~~~~~~~~~g-~~~~~v~~al~~i~~~~~~~~~g~WE~~ 440 (684)
T 1lf6_A 372 VKDNGMIPQNTWISGKPYW-----TGIQLDEQADPIILSYRLKRYD-LYDSLVKPLADFIIKIGPKTGQERWEEI 440 (684)
T ss_dssp HHHHSSCCSCBCTTSCBCC-----CCCCHHHHHHHHHHHHHTTCGG-GTTTTHHHHHHHHHHHCSSBSSCTTSSC
T ss_pred cCCCCCcccceeCCCCccc-----CCccccchHHHHHHHHHHHHcC-chHHHHHHHHHHHHHhCCCCCccccccc
Confidence 9999997543322111111 1345778888887776554322 2236 9999999998643 23557754
No 56
>2gz6_A N-acetyl-D-glucosamine 2-epimerase; anabaena SP. CH1, isomer; 2.00A {Anabaena SP}
Probab=95.37 E-value=0.18 Score=43.53 Aligned_cols=93 Identities=11% Similarity=0.160 Sum_probs=60.5
Q ss_pred chHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHh-cccCCCCccccc--------ccchhhhHHHHHHHHHcccc
Q 026485 40 ECTASALKAMTLFKKLYPKHRTKEVKNFIAKATKFIEDI-QKSDGSWYGSWG--------ICFTYAAWFAISGLVAAKKT 110 (238)
Q Consensus 40 d~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~~a~~~L~~~-Q~~dG~w~~~~~--------~~~~~~T~~al~aL~~~g~~ 110 (238)
...|..|.+++.+.... ...++..+.++++++||++. +.++|+|..... ....+.-++++.||+.+...
T Consensus 53 ~~nar~i~~~a~a~~~~--~~~~~~~~~A~~~~~~l~~~~~~~~Gg~~~~~d~dg~~~~~~~~~~~~af~i~al~~~y~~ 130 (388)
T 2gz6_A 53 WLQNRQVWTFSMLCNQL--EKRENWLKIARNGAKFLAQHGRDDEGNWYFALTRGGEPLVQPYNIFSDCFAAMAFSQYALA 130 (388)
T ss_dssp HHHHHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHHHHSBCTTSCBCSEECTTSCBCCCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcccCCcchHHHHHHHHHHHHHHHH
Confidence 46899999999876541 23355678899999999986 777999964321 23456778899998865432
Q ss_pred C---ccHHHHHHHHHHHHhcccc-CCCC
Q 026485 111 Y---SNCLAIRKATDFLLKIQCE-DGGW 134 (238)
Q Consensus 111 ~---~~~~~i~~a~~~L~~~Q~~-dGgw 134 (238)
. ...+.+.+..++|++.... +|.|
T Consensus 131 tg~~~~l~~A~~~~~~i~~~~~d~~g~~ 158 (388)
T 2gz6_A 131 SGEEWAKDVAMQAYNNVLRRKDNPKGKY 158 (388)
T ss_dssp HCCHHHHHHHHHHHHHHHTC--------
T ss_pred hCCHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 1 2345677788888887643 3443
No 57
>1ulv_A Glucodextranase; GH family 15, (alpha-alpha)6-barrel, SLH domain, hydrolase; HET: ACR; 2.42A {Arthrobacter globiformis} SCOP: a.102.1.5 b.1.18.2 b.1.9.3 b.30.5.5 PDB: 1ug9_A*
Probab=95.15 E-value=0.46 Score=46.68 Aligned_cols=128 Identities=16% Similarity=0.246 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHHHhccc--CCCCccc----ccc---------cc----hhhhHHHHHHHHHccccCccHHHHHHHHHH
Q 026485 63 EVKNFIAKATKFIEDIQKS--DGSWYGS----WGI---------CF----TYAAWFAISGLVAAKKTYSNCLAIRKATDF 123 (238)
Q Consensus 63 ~~~~~i~~a~~~L~~~Q~~--dG~w~~~----~~~---------~~----~~~T~~al~aL~~~g~~~~~~~~i~~a~~~ 123 (238)
+..+.+.+++--|+..+.+ .|+.... |.+ ++ ...+++++++|..+|. .+..++.++|
T Consensus 281 ~~~~~~~rSl~~Lk~l~~~~t~GaiiAS~t~p~~e~~gg~rn~dgYry~W~RDaa~t~~all~~G~----~e~A~~~l~~ 356 (1020)
T 1ulv_A 281 ALRTQYDVSLMTVKSHEDKTFPGAFIASLTIPWGQAASAETHREGYHAVWARDMYQSVTALLAAGD----EEAAARGVEW 356 (1020)
T ss_dssp HHHHHHHHHHHHHHTTBCSSSTTCBCSCSSCTTGGGSBCSSCCCTTCSBCHHHHHHHHHHHHHHTC----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCeEEEeCCCCcccccCCccCCCCCceEccchHHHHHHHHHHcCC----HHHHHHHHHH
Confidence 4556778888888877765 3666321 211 11 2367889999998884 3568899999
Q ss_pred HHhcc-ccCCCCCCCCCCCCCCcccCCCCCCCCHHHHHHHHHHHHHhCCCCC-ChH-HHHHHHHHHHhccc--CCCCCCC
Q 026485 124 LLKIQ-CEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMER-DPT-PLHRAAKLLINSQL--EDGDFPQ 198 (238)
Q Consensus 124 L~~~Q-~~dGgw~~~~~~~~~~~y~~~~~~~~~~~~Ta~al~aL~~~g~~~~-~~~-~v~~a~~~L~~~Q~--~dGgw~~ 198 (238)
|.+.| +++|.|...........|. ......++..|.++....+... .-+ .++++++|+.++-. ..+-|.+
T Consensus 357 L~~~Q~~~~G~~~~~y~i~G~~~w~-----~~Q~D~~g~~l~~~~~~~~~d~~~w~~~v~~al~~i~~~g~~~~~~~WEe 431 (1020)
T 1ulv_A 357 LFTYQQQPDGHFPQTSRVDGTIGQN-----GIQLDETAFPILLANQIGRTDAGFYRNELKPAADYLVAAGPKTPQERWEE 431 (1020)
T ss_dssp HHHHTCCTTSCCCSCBCTTSCBCCC-----CCBTHHHHHHHHHHHHHTCCCHHHHHHTHHHHHHHHHHHCSCBSBCTTSS
T ss_pred HHHHhcCCCCCeeeEEecCCCcCCC-----CccCccchHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCCCChhhhcc
Confidence 99999 8999886544332222221 2355788888888877655421 013 69999999998642 2245665
Q ss_pred C
Q 026485 199 Q 199 (238)
Q Consensus 199 ~ 199 (238)
.
T Consensus 432 ~ 432 (1020)
T 1ulv_A 432 T 432 (1020)
T ss_dssp C
T ss_pred c
Confidence 4
No 58
>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482}
Probab=94.09 E-value=0.21 Score=44.44 Aligned_cols=95 Identities=13% Similarity=0.063 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHhhCCC-c-chHHHHHHHHHHHHHHHHhcccCCCCcccccc--c--chhhhHHHHHHHHH---ccccC-
Q 026485 42 TASALKAMTLFKKLYPK-H-RTKEVKNFIAKATKFIEDIQKSDGSWYGSWGI--C--FTYAAWFAISGLVA---AKKTY- 111 (238)
Q Consensus 42 Ta~~l~aL~~~~~~~~~-~-~~~~~~~~i~~a~~~L~~~Q~~dG~w~~~~~~--~--~~~~T~~al~aL~~---~g~~~- 111 (238)
.++++.+|...-+..|. + ..+++.+.+++.++.|+++|.+||.|....+. + .+.+|+..+.+|+. .|...
T Consensus 268 nGW~~~gl~~~l~~lp~~~~~r~~l~~~~~~~a~~l~~~Q~~~G~W~~vld~~~~y~EsSaTAmfaygllkgvr~G~Ld~ 347 (445)
T 3k11_A 268 NGWALLTACELLDVLPEDYPQRPKVMDYFRAHVRGVTALQSGEGFWHQLLDCNDSYLETSATAIYVYCLAHAINKGWIDA 347 (445)
T ss_dssp HHHHHHHHHHHHHHSCTTCTTHHHHHHHHHHHHHHHHTTCCTTSCEESBTTCTTSCEEHHHHHHHHHHHHHHHHHTSSCH
T ss_pred chHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHhCCCCCchhhccCCCCCCCCccHHHHHHHHHHHHHHcCCCCH
Confidence 67788888776554343 1 23456788999999999999999999642221 1 23356665556643 33321
Q ss_pred -ccHHHHHHHHHHHHhccccCCCCCC
Q 026485 112 -SNCLAIRKATDFLLKIQCEDGGWGE 136 (238)
Q Consensus 112 -~~~~~i~~a~~~L~~~Q~~dGgw~~ 136 (238)
.+.++++|+++.|+++-++||-..+
T Consensus 348 ~~Y~~~A~ka~~~L~~~i~~dG~l~~ 373 (445)
T 3k11_A 348 IAYGPVAQLGWHAVAGKINEEGQVEG 373 (445)
T ss_dssp HHHHHHHHHHHHHHHTTBCTTSCBCS
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCEec
Confidence 2457899999999999999997654
No 59
>1nc5_A Hypothetical protein YTER; structural genomics, helix barrel, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: a.102.1.6 PDB: 2d8l_A* 2gh4_A*
Probab=92.51 E-value=0.8 Score=39.54 Aligned_cols=128 Identities=14% Similarity=0.139 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHhhCCCc--chHHHHHHHHHHHHHHHHhccc-CCCCccccc-----cc--chhhhHHHHHHHHHc---c
Q 026485 42 TASALKAMTLFKKLYPKH--RTKEVKNFIAKATKFIEDIQKS-DGSWYGSWG-----IC--FTYAAWFAISGLVAA---K 108 (238)
Q Consensus 42 Ta~~l~aL~~~~~~~~~~--~~~~~~~~i~~a~~~L~~~Q~~-dG~w~~~~~-----~~--~~~~T~~al~aL~~~---g 108 (238)
.+.++.+|..+-+..|.. ..+++.+..++.+++|+++|.+ ||.|....+ .+ .+.+|+..+.+|+.. |
T Consensus 215 ~gW~~~gl~~~l~~lp~~~~~~~~~~~~~~~~a~~l~~~q~~~dG~W~~~ld~~~~~~~~~EsSatA~~ay~l~~g~~~g 294 (373)
T 1nc5_A 215 IGWYVMSLADMIEELPKKHPNRHVWKNTLQDMIKSICRYQDKETGLWYQIVDKGDRSDNWLESSGSCLYMYAIAKGINKG 294 (373)
T ss_dssp HHHHHHHHHHHGGGSCTTCHHHHHHHHHHHHHHHHHHTTSCTTTSCCBSBTTCTTSTTCCBCHHHHHHHHHHHHHHHHHT
T ss_pred HhHHHHHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHhcCCCCCceeeecCCCCCCCCCccccHHHHHHHHHHHHHHCC
Confidence 567888888766544431 2344668889999999999997 999963111 11 233566666666543 3
Q ss_pred c-cCccHHHHHHHHHHHHhc---cccCCCC--CCCCCCC--CCCc-ccCCCCCCCCHHHHHHHHHHHHHh
Q 026485 109 K-TYSNCLAIRKATDFLLKI---QCEDGGW--GESYRSC--PNKK-YIPLDGNRSNLVQTAWAMMSLIHA 169 (238)
Q Consensus 109 ~-~~~~~~~i~~a~~~L~~~---Q~~dGgw--~~~~~~~--~~~~-y~~~~~~~~~~~~Ta~al~aL~~~ 169 (238)
. +..+.++++|+.+.|++. .++||.. +...... .... |...+-...++...+..|+|+.+.
T Consensus 295 ~l~~~Y~~~a~k~~~~l~~~~~~~~~dG~l~~~~~~~~~~~~~~~yY~~~~~~~~d~~G~g~~lla~~e~ 364 (373)
T 1nc5_A 295 YLDRAYETTLLKAYQGLIQHKTETSEDGAFLVKDICVGTSAGFYDYYVSRERSTNDLHGAGAFILAMTEL 364 (373)
T ss_dssp SSCGGGHHHHHHHHHHHHHHHEEECTTSCEEECCEECSCCSCCHHHHHTSCEESSCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHhceeECCCCCEEecceEEeCcCCCchhhhcccCCCCCcchHHHHHHHHHHH
Confidence 2 123678999999999884 4778843 3211110 0001 111001123577888888887653
No 60
>2gz6_A N-acetyl-D-glucosamine 2-epimerase; anabaena SP. CH1, isomer; 2.00A {Anabaena SP}
Probab=92.30 E-value=0.97 Score=38.81 Aligned_cols=127 Identities=12% Similarity=0.170 Sum_probs=71.2
Q ss_pred HHHHHHHHHH-HHhcccCCCCccccc--------ccchhhhHHHHHHHHHcccc----CccHHHHHHHHHHHHhc-cccC
Q 026485 66 NFIAKATKFI-EDIQKSDGSWYGSWG--------ICFTYAAWFAISGLVAAKKT----YSNCLAIRKATDFLLKI-QCED 131 (238)
Q Consensus 66 ~~i~~a~~~L-~~~Q~~dG~w~~~~~--------~~~~~~T~~al~aL~~~g~~----~~~~~~i~~a~~~L~~~-Q~~d 131 (238)
..+++.+.|. ...+.+.|||..... +...+..+..+.+++.+... ....+.++++++||++. +.++
T Consensus 15 ~l~~~~l~fw~~~~~D~~GGf~~~~~~d~~~~~~eK~l~~nar~i~~~a~a~~~~~~~~~~~~~A~~~~~~l~~~~~~~~ 94 (388)
T 2gz6_A 15 ALLNDVLPFWENHSLDSEGGYFTCLDRQGKVYDTDKFIWLQNRQVWTFSMLCNQLEKRENWLKIARNGAKFLAQHGRDDE 94 (388)
T ss_dssp HHHHTHHHHHHHHCBCTTSSBCCEEBTTSCEEECCEEHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHSBCTT
T ss_pred HHHHhHHHHHHhcCCCCCCCEEeEECCCCCcCCcchhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCC
Confidence 3456778887 446666788753221 12345677888888764332 12567889999999998 6678
Q ss_pred CCCCCCCCCCCCCcccCCCCCCCCHHHHHHHHHHHHHhCCCCCCh---HHHHHHHHHHHhcccC-CCCCC
Q 026485 132 GGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMERDP---TPLHRAAKLLINSQLE-DGDFP 197 (238)
Q Consensus 132 Ggw~~~~~~~~~~~y~~~~~~~~~~~~Ta~al~aL~~~g~~~~~~---~~v~~a~~~L~~~Q~~-dGgw~ 197 (238)
|+|......... + .......+.-++++.||..+.....++ +...+..++++++... +|.|.
T Consensus 95 Gg~~~~~d~dg~----~-~~~~~~~~~~af~i~al~~~y~~tg~~~~l~~A~~~~~~i~~~~~d~~g~~~ 159 (388)
T 2gz6_A 95 GNWYFALTRGGE----P-LVQPYNIFSDCFAAMAFSQYALASGEEWAKDVAMQAYNNVLRRKDNPKGKYT 159 (388)
T ss_dssp SCBCSEECTTSC----B-CCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTC---------
T ss_pred CCEEEEEcCCCC----c-ccCCcchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCcccC
Confidence 887633211000 0 011345778888998887643322222 2455567788776633 45443
No 61
>1lf6_A Glucoamylase; (alpha/alpha) barrel, 6 alpha-helical hairpin torroid, super beta sandwich, carbohydrase family GH15; 2.10A {Thermoanaerobacteriumthermosaccharolyticum} SCOP: a.102.1.5 b.30.5.5 PDB: 1lf9_A*
Probab=90.39 E-value=1.8 Score=40.61 Aligned_cols=77 Identities=13% Similarity=0.088 Sum_probs=52.1
Q ss_pred hHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHhcccCCCCccc--------ccccchhhhHHHHHHHHHccccCc
Q 026485 41 CTASALKAMTLFKKLYPKHRTKEVKNFIAKATKFIEDIQKSDGSWYGS--------WGICFTYAAWFAISGLVAAKKTYS 112 (238)
Q Consensus 41 ~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~~dG~w~~~--------~~~~~~~~T~~al~aL~~~g~~~~ 112 (238)
..+.++++|..++.. +..++.++||.+.|.++|.|... |+....-.++..|.++..+....
T Consensus 344 D~~~~~~al~~~G~~----------~~a~~~l~~l~~~q~~~G~~~~~~~~~G~p~w~~~Q~D~~g~~l~~~~~~~~~g- 412 (684)
T 1lf6_A 344 DLYHVANAFIAAGDV----------DSANRSLDYLAKVVKDNGMIPQNTWISGKPYWTGIQLDEQADPIILSYRLKRYD- 412 (684)
T ss_dssp HHHHHHHHHHHHTCH----------HHHHHHHHHHHHHHHHHSSCCSCBCTTSCBCCCCCCHHHHHHHHHHHHHTTCGG-
T ss_pred HHHHHHHHHHHcCCH----------HHHHHHHHHHHhhcCCCCCcccceeCCCCcccCCccccchHHHHHHHHHHHHcC-
Confidence 467788888877531 45778999999999999998432 22222335677776665543321
Q ss_pred cHHH-HHHHHHHHHhcc
Q 026485 113 NCLA-IRKATDFLLKIQ 128 (238)
Q Consensus 113 ~~~~-i~~a~~~L~~~Q 128 (238)
.-+. ++++++|+.+.-
T Consensus 413 ~~~~~v~~al~~i~~~~ 429 (684)
T 1lf6_A 413 LYDSLVKPLADFIIKIG 429 (684)
T ss_dssp GTTTTHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHhC
Confidence 2355 999999999864
No 62
>1fp3_A N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barrel, isomer; 2.00A {Sus scrofa} SCOP: a.102.1.3
Probab=87.41 E-value=3.6 Score=35.40 Aligned_cols=95 Identities=5% Similarity=-0.094 Sum_probs=58.2
Q ss_pred chHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHh-cccCC--CCcccc----c----ccchhhhHHHHHHHHHcc
Q 026485 40 ECTASALKAMTLFKKLYPKHRTKEVKNFIAKATKFIEDI-QKSDG--SWYGSW----G----ICFTYAAWFAISGLVAAK 108 (238)
Q Consensus 40 d~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~~a~~~L~~~-Q~~dG--~w~~~~----~----~~~~~~T~~al~aL~~~g 108 (238)
..++..|.+++.+....+....++..+.+.++++||.+. +.++| +|.... . ....|.-++++.+|+++-
T Consensus 56 ~~nar~l~~~a~a~~~~~~~~~~~~l~~A~~~~~fl~~~~~d~~gg~g~~~s~d~dg~~~~~~~~lyd~af~~~a~~~~~ 135 (402)
T 1fp3_A 56 WLQGRQVWMYCRLYRKLERFHRPELLDAAKAGGEFLLRHARVAPPEKKCAFVLTRDGRPVKVQRSIFSECFYTMAMNELW 135 (402)
T ss_dssp HHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHHTBSSTTSCCBCSEECTTSCEEECCSSSHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhccCcCCCCceEEEECCCCCccccccchHHHHHHHHHHHHHH
Confidence 357788888887665321112345668999999999986 56565 775321 1 223455677888887543
Q ss_pred cc---CccHHHHHHHHHHHHhcc--ccCCCC
Q 026485 109 KT---YSNCLAIRKATDFLLKIQ--CEDGGW 134 (238)
Q Consensus 109 ~~---~~~~~~i~~a~~~L~~~Q--~~dGgw 134 (238)
.. ....+.+.+.++++++.- .+.|.|
T Consensus 136 ~atgd~~~~~~A~~l~~~~~~~~~d~~~G~f 166 (402)
T 1fp3_A 136 RVTAEARYQSEAVDMMDQIVHWVREDPSGLG 166 (402)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHHHHTCGGGGC
T ss_pred HHhCCHHHHHHHHHHHHHHHHHhccCCCccc
Confidence 21 113455667777777765 355666
No 63
>3e6u_A LANC-like protein 1; alpha barrel, cytoplasm, signaling protein; 2.60A {Homo sapiens} PDB: 3e73_A*
Probab=87.30 E-value=4.9 Score=35.05 Aligned_cols=40 Identities=3% Similarity=0.110 Sum_probs=28.9
Q ss_pred HHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHhcccCCCCcc
Q 026485 45 ALKAMTLFKKLYPKHRTKEVKNFIAKATKFIEDIQKSDGSWYG 87 (238)
Q Consensus 45 ~l~aL~~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~~dG~w~~ 87 (238)
++.+|..+.. ....+++.+.+.++++|+.+.+.++|.|+.
T Consensus 236 I~~~Ll~~~~---~~~~~~~~~~i~~~l~~l~~~~~~~g~wp~ 275 (411)
T 3e6u_A 236 IYYYLMQPSL---QVSQGKLHSLVKPSVDYVCQLKFPSGNYPP 275 (411)
T ss_dssp HHHHHTCGGG---CCCHHHHHHTHHHHHHHHHHTCCTTSCCCS
T ss_pred HHHHHHHHHh---hcChHHHHHHHHHHHHHHHHhhccCCCCCC
Confidence 4455555432 233455678999999999999999999974
No 64
>3gt5_A N-acetylglucosamine 2-epimerase; structural genomics, isomerase, PSI-2; 1.70A {Xylella fastidiosa}
Probab=86.92 E-value=9.6 Score=32.91 Aligned_cols=92 Identities=10% Similarity=0.104 Sum_probs=60.7
Q ss_pred hHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHh-cccC-CCCcccc-------cccchhhhHHHHHHHHHcccc-
Q 026485 41 CTASALKAMTLFKKLYPKHRTKEVKNFIAKATKFIEDI-QKSD-GSWYGSW-------GICFTYAAWFAISGLVAAKKT- 110 (238)
Q Consensus 41 ~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~~a~~~L~~~-Q~~d-G~w~~~~-------~~~~~~~T~~al~aL~~~g~~- 110 (238)
+++..|.+++.+.... ..++..+..+++++||.+. ..++ |+|.... .....|.-++++.||+.+...
T Consensus 53 ~n~r~i~~~a~a~~~~---g~~~~l~~A~~~~~fl~~~~~d~~~Gg~~~~~~dG~~~~~~~~lyd~Af~i~al~~~~~tg 129 (402)
T 3gt5_A 53 SSTRFVFNYAMAYLQF---GTAEYLDAVHHGLSYVRDVHRNPATGGYAWTLCDDRVEDDTNHCYGLAFVMLAYSCGLKVG 129 (402)
T ss_dssp HHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHHHHTTBCTTTSCBCSEEETTEEEECCEEHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhh---CChHHHHHHHHHHHHHHHhCccCCCCcEEEEeeCCCCCcCCcchHHHHHHHHHHHHHHHhC
Confidence 5899999999876531 2345668889999999874 4556 8886322 123467788999999874321
Q ss_pred -CccHHHHHHHHHHHHhcc-ccC-CCCC
Q 026485 111 -YSNCLAIRKATDFLLKIQ-CED-GGWG 135 (238)
Q Consensus 111 -~~~~~~i~~a~~~L~~~Q-~~d-Ggw~ 135 (238)
....+.+.++.++|.+.- .++ |++.
T Consensus 130 d~~~l~~A~~l~~~i~~~f~d~~~G~~~ 157 (402)
T 3gt5_A 130 IKQAREWMDETWCLLERHFWDAEYGLYK 157 (402)
T ss_dssp CTTHHHHHHHHHHHHHHHTEETTTTEEC
T ss_pred ChhHHHHHHHHHHHHHHHhcCCcCCCch
Confidence 124566777788888764 333 5543
No 65
>3gt5_A N-acetylglucosamine 2-epimerase; structural genomics, isomerase, PSI-2; 1.70A {Xylella fastidiosa}
Probab=86.66 E-value=3.1 Score=36.07 Aligned_cols=127 Identities=12% Similarity=0.156 Sum_probs=73.1
Q ss_pred HHHHHHHHHHH-HHhcccCCCCccccc---------ccchhhhHHHHHHHHHccc---cCccHHHHHHHHHHHHhcc-cc
Q 026485 65 KNFIAKATKFI-EDIQKSDGSWYGSWG---------ICFTYAAWFAISGLVAAKK---TYSNCLAIRKATDFLLKIQ-CE 130 (238)
Q Consensus 65 ~~~i~~a~~~L-~~~Q~~dG~w~~~~~---------~~~~~~T~~al~aL~~~g~---~~~~~~~i~~a~~~L~~~Q-~~ 130 (238)
...+++.+.|- ...+.++|||....+ ...++..+..|.+|+.+.. .....+.++++++||++.- .+
T Consensus 12 ~~~~~~~l~fw~~~~~D~~GGf~~~l~~dg~~~~~~~k~l~~n~r~i~~~a~a~~~~g~~~~l~~A~~~~~fl~~~~~d~ 91 (402)
T 3gt5_A 12 RTHISDTMAFYHPRCIDSAGGFFHYFRDDGSIYNATHRHLVSSTRFVFNYAMAYLQFGTAEYLDAVHHGLSYVRDVHRNP 91 (402)
T ss_dssp HHHHHHHHHHHTTTTBCTTSSBCCEECTTSCEEESSEEEHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTBCT
T ss_pred HHHHHHHHHHHHhcCCCCCcCeeeEECCCCCCCCCCchhHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHhCccC
Confidence 45678888875 456678899964211 1224466777777775532 1125578899999999854 34
Q ss_pred C-CCCCCCCCCCCCCcccCCCCCCCCHHHHHHHHHHHHHhCCCCCC--hHHHHHHHHHHHhcc-cCC-CCCC
Q 026485 131 D-GGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMERD--PTPLHRAAKLLINSQ-LED-GDFP 197 (238)
Q Consensus 131 d-Ggw~~~~~~~~~~~y~~~~~~~~~~~~Ta~al~aL~~~g~~~~~--~~~v~~a~~~L~~~Q-~~d-Ggw~ 197 (238)
+ |+|.... ..+. + .......+.-|++++||..+...... .+.+.+..++|.+.. .++ |++.
T Consensus 92 ~~Gg~~~~~--~dG~---~-~~~~~~lyd~Af~i~al~~~~~tgd~~~l~~A~~l~~~i~~~f~d~~~G~~~ 157 (402)
T 3gt5_A 92 ATGGYAWTL--CDDR---V-EDDTNHCYGLAFVMLAYSCGLKVGIKQAREWMDETWCLLERHFWDAEYGLYK 157 (402)
T ss_dssp TTSCBCSEE--ETTE---E-EECCEEHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHTEETTTTEEC
T ss_pred CCCcEEEEe--eCCC---C-CcCCcchHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHhcCCcCCCch
Confidence 5 8876432 1000 0 01134578889999988874332211 134555566777664 333 5544
No 66
>3h7l_A Endoglucanase; dehydrogenase, PSI-2, NYSGXRC, structural GEN protein structure initiative; 2.30A {Vibrio parahaemolyticus}
Probab=83.14 E-value=28 Score=31.92 Aligned_cols=169 Identities=18% Similarity=0.150 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHhhCCCcc------hHHHHHHHHHHHHHHHHhcccCCCCcc----ccccc-------------------
Q 026485 42 TASALKAMTLFKKLYPKHR------TKEVKNFIAKATKFIEDIQKSDGSWYG----SWGIC------------------- 92 (238)
Q Consensus 42 Ta~~l~aL~~~~~~~~~~~------~~~~~~~i~~a~~~L~~~Q~~dG~w~~----~~~~~------------------- 92 (238)
|+.++-.|..+....+... .+++.+.++=+++||+++|.++|.+.. .|...
T Consensus 164 ~~~~~w~ll~~~~~~~~~~~~~~~~~~~lldE~rWg~D~llkm~~~~g~~y~qVgd~W~~d~~~R~~~~~~~~~~~~~~~ 243 (586)
T 3h7l_A 164 TPMVVWNILKGLSLLEGSEDIAAFTRTRLIEEALFGADFLVRMQNEKGFFYMTVFDKWSKDTAQREICAYETQLGHKFDD 243 (586)
T ss_dssp HHHHHHHHHHHHHHSTTSSSSCHHHHHHHHHHHHHHHHHHHHTBCTTSCBBCEEECTTCCCGGGCEEEEEETTTTEEESC
T ss_pred hhHHHHHHHHHHHHhhhhccCcccchHHHHHHHHHHHHHHHhcccCCCeEEEEecCCCCCCCCccccccccCCCCCCCcc
Confidence 4556666665554433311 133456677789999999999999753 33220
Q ss_pred ----chhhhHHHHHHHHHcccc-----C---ccHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcccCCCCCCCCHHHHH
Q 026485 93 ----FTYAAWFAISGLVAAKKT-----Y---SNCLAIRKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTA 160 (238)
Q Consensus 93 ----~~~~T~~al~aL~~~g~~-----~---~~~~~i~~a~~~L~~~Q~~dGgw~~~~~~~~~~~y~~~~~~~~~~~~Ta 160 (238)
...+++..+.||+.+... . ..-.+.+++.+|+.+.... .... + . .+-.+-+.-.
T Consensus 244 y~~~~~~~agl~aAALA~Asrvf~d~~~~a~~~L~aA~~a~~fa~~~~~~---y~~~-g---~-------~~~~De~~~~ 309 (586)
T 3h7l_A 244 YQAGFRQGGGVAIAALAAASRLGVHGEYDQQKYRNAAENGYWHLKEHNTQ---YLND-G---E-------ENIIDEYCAL 309 (586)
T ss_dssp CBCCGGGTHHHHHHHHHHHTTSSSCSSSCHHHHHHHHHHHHHHHHHHHHH---HSTT-S---C-------CCHHHHHHHH
T ss_pred eecCCCCcHHHHHHHHHHHhcccCCCCcChHHHHHHHHHHHHHHHhcCcc---ccCC-C---C-------ccchhHHHHH
Confidence 001234556666655433 2 1235677889999887431 1000 0 0 0011122235
Q ss_pred HHHHHHHHhCCCCCChHHHHHHHH---HHHhcccCC--CC--CCCCcc--ccccCCccccccCCchhhHHHHHHHHHHHh
Q 026485 161 WAMMSLIHAGQMERDPTPLHRAAK---LLINSQLED--GD--FPQQEL--TGVFMENCMLHYPIYRNIFPMWALAEYRSR 231 (238)
Q Consensus 161 ~al~aL~~~g~~~~~~~~v~~a~~---~L~~~Q~~d--Gg--w~~~~~--~~~~~~~~~~~~~~~~~~~~l~aL~~~~~~ 231 (238)
||..-|..+-. +..-++.+++ .|.+++..+ |+ |..... ...|+.. ...+++.+|.++.+.
T Consensus 310 WAA~eLy~ATg---d~~YL~~a~~~a~~l~~~~~~~~~~g~~w~~~d~~~r~~~d~a--------~~gl~~iaLl~l~~~ 378 (586)
T 3h7l_A 310 LASVELFKATK---ETRYLEESRLWAQRLVARQMSDEQIQHFWSANQDGSRPYFHAA--------EAGLPTIALCEYLAI 378 (586)
T ss_dssp HHHHHHHHHHC---CHHHHHHHHHHHHHHHTTEECCSSCSSEEBSSSSSSSBCCCTT--------TTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC---CHHHHHHHHHHHHHHHHhccCCccCCCcCCCcccCCccccccc--------ccHHHHHHHHHhhhh
Confidence 67766665422 2224444444 455555433 33 432211 1112111 356888899988877
Q ss_pred ccCC
Q 026485 232 LLLP 235 (238)
Q Consensus 232 ~~~~ 235 (238)
....
T Consensus 379 ~~d~ 382 (586)
T 3h7l_A 379 EDDS 382 (586)
T ss_dssp CCST
T ss_pred cCCh
Confidence 6643
No 67
>2vn4_A Glucoamylase; hydrolase, carbohydrate binding, glycoside hydrolase family 15, amyloglucosidase; HET: MAN NAG BTB; 1.85A {Hypocrea jecorina} PDB: 2vn7_A*
Probab=82.63 E-value=21 Score=32.74 Aligned_cols=125 Identities=12% Similarity=0.024 Sum_probs=68.7
Q ss_pred HHHHHHHHHhcccCCCCc-----c----cc---cccc----hhhhHHHHHHHH----HccccCccHHHHHHHHHHHHh--
Q 026485 69 AKATKFIEDIQKSDGSWY-----G----SW---GICF----TYAAWFAISGLV----AAKKTYSNCLAIRKATDFLLK-- 126 (238)
Q Consensus 69 ~~a~~~L~~~Q~~dG~w~-----~----~~---~~~~----~~~T~~al~aL~----~~g~~~~~~~~i~~a~~~L~~-- 126 (238)
.-+++.|+..-.++|... | .. ...+ +...++++.+|. .+|. .+..++..+||..
T Consensus 11 ~~~~~~~l~ni~~~g~~~~~~~tGaiIAsptts~pDYrY~W~RDaa~t~~aL~~~~~~~G~----~~~a~~~~~~l~~~~ 86 (599)
T 2vn4_A 11 PIALNNLLCNVGPDGCRAFGTSAGAVIASPSTIDPDYYYMWTRDSALVFKNLIDRFTETYD----AGLQRRIEQYITAQV 86 (599)
T ss_dssp HHHHHHHHTTBTTTCTTSTTSCTTCBCSCSCCSSSCCCSEEHHHHHHHHHHHHHHHHHSBC----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCcccCCCCCCceEEEECCCCCCCCeEEchhhHHHHHHHHHHHHHhCCC----HHHHHHHHHHHhccc
Confidence 336777888777777652 1 00 0112 226788999998 6663 4667889999974
Q ss_pred -cc---ccCCCCCCC-------CCCCCCCcccCCCCCCCCHHH-----HHHHHHHH--HHhCCCC----CChHHHHHHHH
Q 026485 127 -IQ---CEDGGWGES-------YRSCPNKKYIPLDGNRSNLVQ-----TAWAMMSL--IHAGQME----RDPTPLHRAAK 184 (238)
Q Consensus 127 -~Q---~~dGgw~~~-------~~~~~~~~y~~~~~~~~~~~~-----Ta~al~aL--~~~g~~~----~~~~~v~~a~~ 184 (238)
.| ++||.|... .... +..+.+.. +...... ++..+.++ ...+... ...+.|+++++
T Consensus 87 ~lQ~~y~~~G~~~~~~~l~E~~~~ld-G~~~~~~w-~~~Q~D~~glr~~~~~~~~~~~~~~g~~~~~~~~~w~~v~~~l~ 164 (599)
T 2vn4_A 87 TLQGLSNPSGSLADGSGLGEPKFELT-LKPFTGNW-GRPQRDGPALRAIALIGYSKWLINNNYQSTVSNVIWPIVRNDLN 164 (599)
T ss_dssp HHHHCCBTTBCSTTSGGGGCCEECTT-SCBCCSCC-SCCCTHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTHHHHHHHHH
T ss_pred ceeeeeCCCCCcccccCcCceEEecC-CccccCcC-CCeeccccchhHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHH
Confidence 66 789998521 0110 10110100 1122222 44444433 2233221 01258999999
Q ss_pred HHHhcccCC--CCCCCC
Q 026485 185 LLINSQLED--GDFPQQ 199 (238)
Q Consensus 185 ~L~~~Q~~d--Ggw~~~ 199 (238)
|+.+.-+.. |-|.+.
T Consensus 165 ~v~~~w~~~d~dlWEer 181 (599)
T 2vn4_A 165 YVAQYWNQTGFDLWEEV 181 (599)
T ss_dssp HHHHHTTSCEECTTSCC
T ss_pred HHHHhCCCCCCCeeeec
Confidence 999887643 668766
No 68
>2zbl_A Putative isomerase; N-acyl-D-glucosamine 2-epimerase protein family; HET: BMA; 1.60A {Salmonella typhimurium} PDB: 2afa_A 2rgk_A*
Probab=82.60 E-value=12 Score=32.58 Aligned_cols=93 Identities=17% Similarity=0.209 Sum_probs=61.1
Q ss_pred chHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHhccc-C-CCCcccc----c---ccchhhhHHHHHHHHHc---
Q 026485 40 ECTASALKAMTLFKKLYPKHRTKEVKNFIAKATKFIEDIQKS-D-GSWYGSW----G---ICFTYAAWFAISGLVAA--- 107 (238)
Q Consensus 40 d~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~~-d-G~w~~~~----~---~~~~~~T~~al~aL~~~--- 107 (238)
-+++..|.+++.+... . .++..+...++++||.+.-.. + |+|.-.. . ....|.-++++.+|+.+
T Consensus 51 ~~nar~i~~~a~a~~~-g---~~~~l~~A~~~~~fl~~~~~D~~~GG~~~s~d~dg~~~~~k~lyd~Af~i~al~~~~~t 126 (421)
T 2zbl_A 51 WITARMLHVYSVAASM-G---RPGAYDLVDHGIKAMNGALRDKKYGGWYACVNDQGVVDASKQGYQHFFALLGAASAVTT 126 (421)
T ss_dssp HHHHHHHHHHHHHHHT-T---CTTHHHHHHHHHHHHTTTTBCTTTSSBCSEEETTEEEECCEEHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHc-C---ChhHHHHHHHHHHHHHHhccCcCCCeEEEEeCCCCCcCCchhHHHHHHHHHHHHHHHHh
Confidence 4688899999887642 1 233557899999999876433 3 8885321 1 23456668888888763
Q ss_pred cccCccHHHHHHHHHHHHhccc-c-CCCCCCC
Q 026485 108 KKTYSNCLAIRKATDFLLKIQC-E-DGGWGES 137 (238)
Q Consensus 108 g~~~~~~~~i~~a~~~L~~~Q~-~-dGgw~~~ 137 (238)
+.. ...+.+.+++++|.+.-. + +|+|...
T Consensus 127 g~~-~~l~~a~~~~~~l~~~~~d~~~Ggf~~~ 157 (421)
T 2zbl_A 127 GHP-EARKLLDYTIEVIEKYFWSEEEQMCLES 157 (421)
T ss_dssp TCT-THHHHHHHHHHHHHHHTEETTTTEECCE
T ss_pred CCc-cHHHHHHHHHHHHHHHhccCCCCCeeee
Confidence 222 255677888899987553 3 6776543
No 69
>1ulv_A Glucodextranase; GH family 15, (alpha-alpha)6-barrel, SLH domain, hydrolase; HET: ACR; 2.42A {Arthrobacter globiformis} SCOP: a.102.1.5 b.1.18.2 b.1.9.3 b.30.5.5 PDB: 1ug9_A*
Probab=80.60 E-value=14 Score=36.38 Aligned_cols=78 Identities=14% Similarity=0.082 Sum_probs=52.8
Q ss_pred chHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHhc-ccCCCCccc--------ccccchhhhHHHHHHHHHcccc
Q 026485 40 ECTASALKAMTLFKKLYPKHRTKEVKNFIAKATKFIEDIQ-KSDGSWYGS--------WGICFTYAAWFAISGLVAAKKT 110 (238)
Q Consensus 40 d~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q-~~dG~w~~~--------~~~~~~~~T~~al~aL~~~g~~ 110 (238)
-.++.++++|..++.. +..++.++||.+.| +++|.|... |.......++..+.++..+...
T Consensus 332 RDaa~t~~all~~G~~----------e~A~~~l~~L~~~Q~~~~G~~~~~y~i~G~~~w~~~Q~D~~g~~l~~~~~~~~~ 401 (1020)
T 1ulv_A 332 RDMYQSVTALLAAGDE----------EAAARGVEWLFTYQQQPDGHFPQTSRVDGTIGQNGIQLDETAFPILLANQIGRT 401 (1020)
T ss_dssp HHHHHHHHHHHHHTCH----------HHHHHHHHHHHHHTCCTTSCCCSCBCTTSCBCCCCCBTHHHHHHHHHHHHHTCC
T ss_pred chHHHHHHHHHHcCCH----------HHHHHHHHHHHHHhcCCCCCeeeEEecCCCcCCCCccCccchHHHHHHHHHHhc
Confidence 3577888888877531 45788999999999 899988531 2211224677777777665432
Q ss_pred C-ccHH-HHHHHHHHHHhc
Q 026485 111 Y-SNCL-AIRKATDFLLKI 127 (238)
Q Consensus 111 ~-~~~~-~i~~a~~~L~~~ 127 (238)
. ..-+ .++++++||.+.
T Consensus 402 d~~~w~~~v~~al~~i~~~ 420 (1020)
T 1ulv_A 402 DAGFYRNELKPAADYLVAA 420 (1020)
T ss_dssp CHHHHHHTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHh
Confidence 1 0123 799999999987
No 70
>3ren_A Glycosyl hydrolase, family 8; (alpha/alpha)6-barrel fold, alpha-amylase; 2.00A {Clostridium perfringens}
Probab=80.16 E-value=19 Score=30.73 Aligned_cols=147 Identities=15% Similarity=0.143 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHhcccCC-CCccc-cc---ccchh-------hhHHHHHHHHHccccCccHHHHHHHHHHHHhccccCC
Q 026485 65 KNFIAKATKFIEDIQKSDG-SWYGS-WG---ICFTY-------AAWFAISGLVAAKKTYSNCLAIRKATDFLLKIQCEDG 132 (238)
Q Consensus 65 ~~~i~~a~~~L~~~Q~~dG-~w~~~-~~---~~~~~-------~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~dG 132 (238)
+..++++++.|....-+|+ .+... +. ..+.| ..-.+.+-|...|... ....+||.+.-...|
T Consensus 190 ~~l~~~g~~lL~~g~p~D~~~l~~~~~~~~~~~y~yd~~vn~iDalrv~L~La~~g~~~------~~~~~fl~~~~~~~g 263 (350)
T 3ren_A 190 EGIYEKSNSIIENGKISEEVPLYRKVFYEETQKYDEEENVDFLLSTIVILNRIEAGENE------ESSIKWIKEKFKKDG 263 (350)
T ss_dssp HHHHHHHHHHHHTTBCCSSSCCBCSEEETTTTEECCCSEEEHHHHHHHHHHHHHTTCCC------HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCCcccccCCcccccCCCCcccccccchHHHHHHHHHHHhcCCCc------HHHHHHHHHHHhhcC
Confidence 4788999999998655663 23221 11 11222 2344555566667653 124778774222245
Q ss_pred CCCCCCCCCCCCcccCCCCCCCCHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcccCCCCCCCCccccccCCccccc
Q 026485 133 GWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMERDPTPLHRAAKLLINSQLEDGDFPQQELTGVFMENCMLH 212 (238)
Q Consensus 133 gw~~~~~~~~~~~y~~~~~~~~~~~~Ta~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~~dGgw~~~~~~~~~~~~~~~~ 212 (238)
..........++ ......+...|||.+|...... |.+-.+.+++-+.+-|..|+...+. |+|...---.
T Consensus 264 ~l~~~y~~~tg~------~~~~~eS~g~yAiaal~~~~~~--D~~la~~~~~rm~~fq~~d~~s~yy---GG~~~~~~~~ 332 (350)
T 3ren_A 264 FLVATYNGKNGD------ATSQIESPSIYSNVALIANYIG--DKELFNKAIDKLKYYQIKNKDSVLY---GGFGDEKTNS 332 (350)
T ss_dssp SCCSEEETTTCC------BCCCCCCHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHSCCCTTSTTT---TSCSBTTTTB
T ss_pred CcceEEECCCCC------cCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcccCCCCcccC---CcccccCCCc
Confidence 322111100000 0011123444555555443322 4458888999999999888555432 3333211112
Q ss_pred cCCchhhHHHHHHHHH
Q 026485 213 YPIYRNIFPMWALAEY 228 (238)
Q Consensus 213 ~~~~~~~~~l~aL~~~ 228 (238)
..++.+.+||.|...|
T Consensus 333 ~~sfdNL~~LlA~~~~ 348 (350)
T 3ren_A 333 VYSFDNLNALLAFQKY 348 (350)
T ss_dssp CBHHHHHHHHHHHHTC
T ss_pred eeeeccHHHHHHHHhh
Confidence 3455678888887554
No 71
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=78.52 E-value=2.6 Score=26.49 Aligned_cols=28 Identities=11% Similarity=0.227 Sum_probs=21.5
Q ss_pred HHHHHHHHccccCccHHHHHHHHHHHHhccccCC
Q 026485 99 FAISGLVAAKKTYSNCLAIRKATDFLLKIQCEDG 132 (238)
Q Consensus 99 ~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~dG 132 (238)
.+..||...+.. ++||++||-++..+.-
T Consensus 35 qA~kALKat~~N------vErAaDWLFSH~D~~~ 62 (63)
T 1wgn_A 35 CVLRAMKKKGEN------IEQILDYLFAHSGPSS 62 (63)
T ss_dssp HHHHHHHHHCSC------HHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHcCCC------HHHHHHHHHhCCCCCC
Confidence 477788776654 7899999999877653
No 72
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=77.12 E-value=2.3 Score=26.71 Aligned_cols=27 Identities=7% Similarity=0.164 Sum_probs=20.1
Q ss_pred HHHHHHHHhCCCCCChHHHHHHHHHHHhcccCC
Q 026485 161 WAMMSLIHAGQMERDPTPLHRAAKLLINSQLED 193 (238)
Q Consensus 161 ~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~~d 193 (238)
.|..||.+.+. .|+||++||-++..+.
T Consensus 35 qA~kALKat~~------NvErAaDWLFSH~D~~ 61 (63)
T 1wgn_A 35 CVLRAMKKKGE------NIEQILDYLFAHSGPS 61 (63)
T ss_dssp HHHHHHHHHCS------CHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHcCC------CHHHHHHHHHhCCCCC
Confidence 35667776654 5999999999977664
No 73
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=74.66 E-value=3.5 Score=26.44 Aligned_cols=27 Identities=22% Similarity=0.148 Sum_probs=21.2
Q ss_pred HHHHHHHccccCccHHHHHHHHHHHHhccccCC
Q 026485 100 AISGLVAAKKTYSNCLAIRKATDFLLKIQCEDG 132 (238)
Q Consensus 100 al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~dG 132 (238)
.+.||...+-. +++|++||++.+..+|
T Consensus 37 n~~AL~at~Gn------ve~Ave~L~~~~~~~~ 63 (67)
T 2dna_A 37 NLQALIATDGD------TNAAIYKLKSSQGFSG 63 (67)
T ss_dssp HHHHHHHTTSC------HHHHHHHHHHCCSSSC
T ss_pred HHHHHHHcCCC------HHHHHHHHHhCCCccC
Confidence 57888887654 6899999999876655
No 74
>1fp3_A N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barrel, isomer; 2.00A {Sus scrofa} SCOP: a.102.1.3
Probab=72.24 E-value=19 Score=30.73 Aligned_cols=129 Identities=9% Similarity=0.052 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHH-Hhcc-cCCCCccccc--------ccchhhhHHHHHHHHHccc------cCccHHHHHHHHHHHHhc
Q 026485 64 VKNFIAKATKFIE-DIQK-SDGSWYGSWG--------ICFTYAAWFAISGLVAAKK------TYSNCLAIRKATDFLLKI 127 (238)
Q Consensus 64 ~~~~i~~a~~~L~-~~Q~-~dG~w~~~~~--------~~~~~~T~~al~aL~~~g~------~~~~~~~i~~a~~~L~~~ 127 (238)
++..+++++.+.. .... ..|||+.... +...+..+..|.+++.+.. .....+.++++++||++.
T Consensus 15 l~~~~~~~l~~w~~~~~D~~~GGf~~~~~~dg~~~~~~k~l~~nar~l~~~a~a~~~~~~~~~~~~l~~A~~~~~fl~~~ 94 (402)
T 1fp3_A 15 VGQELDRVMAFWLEHSHDREHGGFFTCLGRDGRVYDDLKYVWLQGRQVWMYCRLYRKLERFHRPELLDAAKAGGEFLLRH 94 (402)
T ss_dssp HHHHHHHHHHHHHHHSBCTTTSSBCCCBCTTSCBSCCCEEHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccCCCCCCCCEeeEECCCCCCCCCccchhhhHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHh
Confidence 3445688899988 4544 3678854211 1224455666777764321 112457899999999997
Q ss_pred -cccCC--CCCCCCCCCCCCcccCCCCCCCCHHHHHHHHHHHHHhCCCCCCh---HHHHHHHHHHHhcc--cCCCCCC
Q 026485 128 -QCEDG--GWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMERDP---TPLHRAAKLLINSQ--LEDGDFP 197 (238)
Q Consensus 128 -Q~~dG--gw~~~~~~~~~~~y~~~~~~~~~~~~Ta~al~aL~~~g~~~~~~---~~v~~a~~~L~~~Q--~~dGgw~ 197 (238)
+.++| ||....... ..+ .......+.-++.+.++..+.....++ +.+.+.++++++.. .++|.|.
T Consensus 95 ~~d~~gg~g~~~s~d~d----g~~-~~~~~~lyd~af~~~a~~~~~~atgd~~~~~~A~~l~~~~~~~~~d~~~G~f~ 167 (402)
T 1fp3_A 95 ARVAPPEKKCAFVLTRD----GRP-VKVQRSIFSECFYTMAMNELWRVTAEARYQSEAVDMMDQIVHWVREDPSGLGR 167 (402)
T ss_dssp TBSSTTSCCBCSEECTT----SCE-EECCSSSHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHTCGGGGCC
T ss_pred ccCcCCCCceEEEECCC----CCc-cccccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhccCCCcccC
Confidence 44454 665321100 000 001234555666666665432211122 23444555665544 3557663
No 75
>2vn4_A Glucoamylase; hydrolase, carbohydrate binding, glycoside hydrolase family 15, amyloglucosidase; HET: MAN NAG BTB; 1.85A {Hypocrea jecorina} PDB: 2vn7_A*
Probab=70.45 E-value=25 Score=32.28 Aligned_cols=91 Identities=14% Similarity=0.119 Sum_probs=50.1
Q ss_pred hHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHH---hc---ccCCCCc------------------ccccc--cch
Q 026485 41 CTASALKAMTLFKKLYPKHRTKEVKNFIAKATKFIED---IQ---KSDGSWY------------------GSWGI--CFT 94 (238)
Q Consensus 41 ~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~~a~~~L~~---~Q---~~dG~w~------------------~~~~~--~~~ 94 (238)
..++++++|...... ... .+..++..+||.. .| ++||.|. +.|+. .+.
T Consensus 54 Daa~t~~aL~~~~~~-~G~-----~~~a~~~~~~l~~~~~lQ~~y~~~G~~~~~~~l~E~~~~ldG~~~~~~w~~~Q~D~ 127 (599)
T 2vn4_A 54 DSALVFKNLIDRFTE-TYD-----AGLQRRIEQYITAQVTLQGLSNPSGSLADGSGLGEPKFELTLKPFTGNWGRPQRDG 127 (599)
T ss_dssp HHHHHHHHHHHHHHH-SBC-----HHHHHHHHHHHHHHHHHHHCCBTTBCSTTSGGGGCCEECTTSCBCCSCCSCCCTHH
T ss_pred hHHHHHHHHHHHHHh-CCC-----HHHHHHHHHHHhcccceeeeeCCCCCcccccCcCceEEecCCccccCcCCCeeccc
Confidence 478888888832200 011 1356677888864 67 8999984 12321 112
Q ss_pred hh---hHHHHHHHH--HccccC----ccHHHHHHHHHHHHhccccC--CCCCCC
Q 026485 95 YA---AWFAISGLV--AAKKTY----SNCLAIRKATDFLLKIQCED--GGWGES 137 (238)
Q Consensus 95 ~~---T~~al~aL~--~~g~~~----~~~~~i~~a~~~L~~~Q~~d--Ggw~~~ 137 (238)
++ ++..+.++. ..+... ..-+.|+++++||.+.-++. |-|.+.
T Consensus 128 ~glr~~~~~~~~~~~~~~g~~~~~~~~~w~~v~~~l~~v~~~w~~~d~dlWEer 181 (599)
T 2vn4_A 128 PALRAIALIGYSKWLINNNYQSTVSNVIWPIVRNDLNYVAQYWNQTGFDLWEEV 181 (599)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHTHHHHHHHHHHHHHHTTSCEECTTSCC
T ss_pred cchhHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHhCCCCCCCeeeec
Confidence 11 444443332 233210 02478999999999986643 556543
No 76
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=70.41 E-value=4 Score=26.14 Aligned_cols=26 Identities=27% Similarity=0.160 Sum_probs=19.0
Q ss_pred HHHHHHhCCCCCChHHHHHHHHHHHhcccCCC
Q 026485 163 MMSLIHAGQMERDPTPLHRAAKLLINSQLEDG 194 (238)
Q Consensus 163 l~aL~~~g~~~~~~~~v~~a~~~L~~~Q~~dG 194 (238)
+.||.+++. .|++||+||++.+...|
T Consensus 38 ~~AL~at~G------nve~Ave~L~~~~~~~~ 63 (67)
T 2dna_A 38 LQALIATDG------DTNAAIYKLKSSQGFSG 63 (67)
T ss_dssp HHHHHHTTS------CHHHHHHHHHHCCSSSC
T ss_pred HHHHHHcCC------CHHHHHHHHHhCCCccC
Confidence 566666543 58999999999876655
No 77
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=68.67 E-value=4.8 Score=28.81 Aligned_cols=60 Identities=7% Similarity=-0.082 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhcc-cCCCCccc----------ccccchhhhHHHHHHHHHccccCc--------cHHHHHHHHHHHHhc
Q 026485 68 IAKATKFIEDIQK-SDGSWYGS----------WGICFTYAAWFAISGLVAAKKTYS--------NCLAIRKATDFLLKI 127 (238)
Q Consensus 68 i~~a~~~L~~~Q~-~dG~w~~~----------~~~~~~~~T~~al~aL~~~g~~~~--------~~~~i~~a~~~L~~~ 127 (238)
++++++||..++. .|-++... .........-..+..|.++|-... ....++||++||..+
T Consensus 36 ~e~amewL~~h~~L~d~~~d~~~~e~~l~~~~~~~~~~~~~~~~v~~L~eMGF~~~~a~~AL~~~~nd~erAlewL~~~ 114 (118)
T 4ae4_A 36 IEQILDYLFAHGQLCEKGFDPLLVEEALEMHQCSEEKMMEFLQLMSKFKEMGFELKDIKEVLLLHNNDQDNALEDLMAR 114 (118)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhchhcccCCChhhhHHHHHhccCCccccccCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 6789999998864 23333110 000000001123555556664310 222378999999876
No 78
>2fba_A Glucoamylase Glu1; (alpha-alpha)6 barrel, TRIS, hydrolase; 1.10A {Saccharomycopsis fibuligera} SCOP: a.102.1.1 PDB: 1ayx_A* 2f6d_A
Probab=68.41 E-value=65 Score=28.69 Aligned_cols=120 Identities=10% Similarity=0.074 Sum_probs=63.9
Q ss_pred hhHHHHHHHHHccccCc----cHHHHHHHHHH---HHhccccCCCCCC---------CCCCCCCCcccCCCCCCCCHHHH
Q 026485 96 AAWFAISGLVAAKKTYS----NCLAIRKATDF---LLKIQCEDGGWGE---------SYRSCPNKKYIPLDGNRSNLVQT 159 (238)
Q Consensus 96 ~T~~al~aL~~~g~~~~----~~~~i~~a~~~---L~~~Q~~dGgw~~---------~~~~~~~~~y~~~~~~~~~~~~T 159 (238)
..++++.+|..+|.... ..+.+++-++| |....+++|.|.. .+.+. +..+.+ .-+.+....+
T Consensus 70 Daa~t~~aL~~~g~~~~~~~~l~~~a~~y~~~~~~lq~~~~~~G~~~~~~~~glgep~y~vd-G~~~~~-~w~~~Q~D~~ 147 (492)
T 2fba_A 70 DSAITFLTVLSELEDNNFNTTLAKAVEYYINTSYNLQRTSNPSGSFDDENHKGLGEPKFNTD-GSAYTG-AWGRPQNDGP 147 (492)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTSCBTTBCTTSGGGGGGGCCEECTT-SCBCCS-CCSCCBTTHH
T ss_pred hHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHhcccCCCCCcCcccccccCceeeccC-CCcCCc-ccCCccccch
Confidence 67889999988875211 14567777776 4444478888863 11111 111110 0112344455
Q ss_pred HHHHHHHHH-------hCCC---------------CCC-hHHHHHHHHHHHhcccC--CCCCCCCccccccCCccccccC
Q 026485 160 AWAMMSLIH-------AGQM---------------ERD-PTPLHRAAKLLINSQLE--DGDFPQQELTGVFMENCMLHYP 214 (238)
Q Consensus 160 a~al~aL~~-------~g~~---------------~~~-~~~v~~a~~~L~~~Q~~--dGgw~~~~~~~~~~~~~~~~~~ 214 (238)
+..+.+|.. .+.. ... .+.|++.++|+.+.=+. .|=|.+.. | ++
T Consensus 148 g~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~v~~~w~~pd~dlWEer~--g---------~~ 216 (492)
T 2fba_A 148 ALRAYAISRYLNDVNSLNEGKLVLTDSGDINFSSTEDIYKNIIKPDLEYVIGYWDSTGFDLWEENQ--G---------RH 216 (492)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCCSSTTCTTCSCSSHHHHHHHTHHHHHHHHHHHTTSCEECTTSCCE--E---------CC
T ss_pred hHHHHHHHHHHHHhhccccchhhhhhhccccccccHHHHHHHHHHHHHHHHHhcCCCCCCCcCccC--C---------CC
Confidence 555544432 2221 001 14788999999886543 26687654 2 12
Q ss_pred CchhhHHHHHHHHH
Q 026485 215 IYRNIFPMWALAEY 228 (238)
Q Consensus 215 ~~~~~~~l~aL~~~ 228 (238)
.++.+++..||-+.
T Consensus 217 ~~T~~~~~~AL~~a 230 (492)
T 2fba_A 217 FFTSLVQQKALAYA 230 (492)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 33566666666444
No 79
>3e6u_A LANC-like protein 1; alpha barrel, cytoplasm, signaling protein; 2.60A {Homo sapiens} PDB: 3e73_A*
Probab=65.87 E-value=65 Score=27.76 Aligned_cols=43 Identities=7% Similarity=0.056 Sum_probs=29.1
Q ss_pred hhhhHHHHHHHHHccccC---ccHHHHHHHHHHHHhccccCCCCCC
Q 026485 94 TYAAWFAISGLVAAKKTY---SNCLAIRKATDFLLKIQCEDGGWGE 136 (238)
Q Consensus 94 ~~~T~~al~aL~~~g~~~---~~~~~i~~a~~~L~~~Q~~dGgw~~ 136 (238)
.++++=++.+|..+.... ...+.++++++|+++.+.++|.|..
T Consensus 230 aHG~aGI~~~Ll~~~~~~~~~~~~~~i~~~l~~l~~~~~~~g~wp~ 275 (411)
T 3e6u_A 230 AHGLAGIYYYLMQPSLQVSQGKLHSLVKPSVDYVCQLKFPSGNYPP 275 (411)
T ss_dssp TTSHHHHHHHHTCGGGCCCHHHHHHTHHHHHHHHHHTCCTTSCCCS
T ss_pred cccHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHhhccCCCCCC
Confidence 344444555666554322 1346789999999999998988865
No 80
>2ahf_A Unsaturated glucuronyl hydrolase; alpha6/alpha6 barrel, glycoside hydrolase family 88; 1.52A {Bacillus SP} PDB: 2ahg_A* 2fv0_A* 2fv1_A* 2d5j_A 1vd5_A 2fuz_A
Probab=65.23 E-value=66 Score=27.58 Aligned_cols=179 Identities=11% Similarity=0.039 Sum_probs=90.4
Q ss_pred hHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHhc-ccCCCCcccc-------------c-cc----c--hhhhHH
Q 026485 41 CTASALKAMTLFKKLYPKHRTKEVKNFIAKATKFIEDIQ-KSDGSWYGSW-------------G-IC----F--TYAAWF 99 (238)
Q Consensus 41 ~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q-~~dG~w~~~~-------------~-~~----~--~~~T~~ 99 (238)
.|-..|.+|..+++.. .+++..+...+.++++++.. ++||+..-.+ . .+ + ..+.+.
T Consensus 149 D~mmni~~L~~A~~~~---gd~~y~~~A~~~a~~~l~~~~r~dgs~~h~~~~D~~tG~~~~~~t~qG~~dds~WaRGqAw 225 (377)
T 2ahf_A 149 DCLLNLPLLLWAGEQT---GDPEYRRVAEAHALKSRRFLVRGDDSSYHTFYFDPENGNAIRGGTHQGNTDGSTWTRGQAW 225 (377)
T ss_dssp GGGGGHHHHHHHHHHH---CCTHHHHHHHHHHHHHHHHTBBTTSCBCSEEEECTTTCCEEEEECSSSSSTTSCBHHHHHH
T ss_pred chHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHhCcCCCCCeEEEEEeeCCCCCeeeCCCcCCcCCcchhHHHHHH
Confidence 3445588888777642 23345567777778877654 5667653110 0 01 1 113477
Q ss_pred HHHHHHHccccC---ccHHHHHHHHHHHHhccccCCC-CCCCCCCCCCCcccCCCCCCCCHHHHHHHHHHHHHhCCCCC-
Q 026485 100 AISGLVAAKKTY---SNCLAIRKATDFLLKIQCEDGG-WGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMER- 174 (238)
Q Consensus 100 al~aL~~~g~~~---~~~~~i~~a~~~L~~~Q~~dGg-w~~~~~~~~~~~y~~~~~~~~~~~~Ta~al~aL~~~g~~~~- 174 (238)
++.+|..+-+.. ..-+...+..++++++..+||+ +....... ++...-+++.++.+..+|+.......
T Consensus 226 ~i~gl~~ly~~T~d~~yL~~A~~la~~~l~~~~~d~~pywd~~~~~-------~~~~~~d~Sa~aiaA~~Ll~L~~~~~~ 298 (377)
T 2ahf_A 226 GIYGFALNSRYLGNADLLETAKRMARHFLARVPEDGVVYWDFEVPQ-------EPSSYRDSSASAITACGLLEIASQLDE 298 (377)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCTTSSCBSBTTSCC-------CTTSCBCHHHHHHHHHHHHHHHHTSCT
T ss_pred HHHHHHHHHHHHCChHHHHHHHHHHHHHHHhhHHhCCcccccCCCc-------cCCCccCCCHHHHHHHHHHHHHHhcCc
Confidence 777777643321 1334677888999999866776 32211100 01122356666666666655432210
Q ss_pred ----C---hHHHHHHHHHHHhcc-c-----CCCCCCCCccccccCCcccc-ccCCchhhHHHHHHHHHHHh
Q 026485 175 ----D---PTPLHRAAKLLINSQ-L-----EDGDFPQQELTGVFMENCML-HYPIYRNIFPMWALAEYRSR 231 (238)
Q Consensus 175 ----~---~~~v~~a~~~L~~~Q-~-----~dGgw~~~~~~~~~~~~~~~-~~~~~~~~~~l~aL~~~~~~ 231 (238)
+ .+..++.++-|.+.- . .+|-.... ++..+....+ +--.|-.++-+-||.|+.+.
T Consensus 299 ~~~~~~~Y~~~A~~~l~~l~~~y~~~~~~~~~g~L~h~--~~~~~~~~~~d~~~~ygDy~~~Eal~r~~~~ 367 (377)
T 2ahf_A 299 SDPERQRFIDAAKTTVTALRDGYAERDDGEAEGFIRRG--SYHVRGGISPDDYTIWGDYYYLEALLRLERG 367 (377)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHTBCCCCSSCCCSBSCB--CSBTTTTBSSSBCBHHHHHHHHHHHHHHHHC
T ss_pred cccchHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecc--cccCCCCCCCCcCccHHHHHHHHHHHHHHcC
Confidence 1 135566777666532 1 12222211 1112211111 11223566888999988763
No 81
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=61.87 E-value=9.2 Score=24.95 Aligned_cols=27 Identities=26% Similarity=0.314 Sum_probs=20.8
Q ss_pred HHHHHHHHccccCccHHHHHHHHHHHHhccccC
Q 026485 99 FAISGLVAAKKTYSNCLAIRKATDFLLKIQCED 131 (238)
Q Consensus 99 ~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~d 131 (238)
.++.||...+-. +++|++||+..+-++
T Consensus 46 ~~~~AL~~t~Gn------ve~Ave~L~~~~~~~ 72 (74)
T 1vej_A 46 ANLQALVATDGD------IHAAIEMLLGASGPS 72 (74)
T ss_dssp HHHHHHHHTTSC------HHHHHHHHHTCCCCC
T ss_pred HHHHHHHHhCCC------HHHHHHHHHhCCCCC
Confidence 367888876644 689999999987654
No 82
>2zzr_A Unsaturated glucuronyl hydrolase; alpha barrel; 1.75A {Streptococcus agalactiae} PDB: 3anj_A 3ank_A* 3ani_A*
Probab=61.79 E-value=79 Score=27.33 Aligned_cols=181 Identities=12% Similarity=0.086 Sum_probs=93.1
Q ss_pred chHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHhc-ccCCCCcccc------c--------ccc------hhhhH
Q 026485 40 ECTASALKAMTLFKKLYPKHRTKEVKNFIAKATKFIEDIQ-KSDGSWYGSW------G--------ICF------TYAAW 98 (238)
Q Consensus 40 d~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q-~~dG~w~~~~------~--------~~~------~~~T~ 98 (238)
..+-.-|.+|..+++.. .++++.+...+.++++++.. ++||+..-.+ | .++ ..+.|
T Consensus 173 ID~~mni~~L~~A~~~~---gd~~y~~~A~~ha~~~l~~~~r~dgs~~h~~~~d~~~G~~~~~~t~qGy~dds~WaRGqA 249 (397)
T 2zzr_A 173 IDCLLNIQLLFFAYEQT---GDEKYRQVAVNHFYASANNVVRDDSSAFHTFYFDPETGEPLKGVTRQGYSDESSWARGQA 249 (397)
T ss_dssp TTHHHHTHHHHHHHHHH---CCHHHHHHHHHHHHHHHHHTBCTTSCBCSEEEECTTTCCEEEEECTTSSSTTSCBHHHHH
T ss_pred echHhHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHhCcCCCCCeEEEEEeeCCCCCcccCCcccccCcchhhHHHHH
Confidence 44666888888877642 23445566666677766644 5556542110 0 111 11457
Q ss_pred HHHHHHHHcccc---CccHHHHHHHHHHHHhccccCCC-CCCCCCCCCCCcccCCCCCCCCHHHHHHHHHHHHHhCCCC-
Q 026485 99 FAISGLVAAKKT---YSNCLAIRKATDFLLKIQCEDGG-WGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQME- 173 (238)
Q Consensus 99 ~al~aL~~~g~~---~~~~~~i~~a~~~L~~~Q~~dGg-w~~~~~~~~~~~y~~~~~~~~~~~~Ta~al~aL~~~g~~~- 173 (238)
+++.+|..+-.. ...-+...+..++++++-.+||+ +....... .+...-+++.++.+..+|+.+....
T Consensus 250 w~i~gl~~lY~~T~d~~yL~~A~~la~~~l~~~~~d~~pywdt~~~~-------~~~~~~D~Sa~aiaA~~Ll~L~~~~~ 322 (397)
T 2zzr_A 250 WGIYGIPLSYRKMKDYQQIILFKGMTNYFLNRLPEDKVSYWDLIFTD-------GSGQPRDTSATATAVCGIHEMLKYLP 322 (397)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTCCTTSCCBSBTTCCT-------TSCCCBCHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHhCCccccCCCCC-------CCCCcCCCCHHHHHHHHHHHHHHhcC
Confidence 788888765321 11335556778888887655665 33221100 0122345777777777776653321
Q ss_pred C---C----hHHHHHHHHHHHhcc-cC---CCCCCCCccccccCCccccccCC-chhhHHHHHHHHHHH
Q 026485 174 R---D----PTPLHRAAKLLINSQ-LE---DGDFPQQELTGVFMENCMLHYPI-YRNIFPMWALAEYRS 230 (238)
Q Consensus 174 ~---~----~~~v~~a~~~L~~~Q-~~---dGgw~~~~~~~~~~~~~~~~~~~-~~~~~~l~aL~~~~~ 230 (238)
. . .+..++.++-|.+.- .. ++..--.+.++..|....+..+. |..++-+-||.|+.+
T Consensus 323 ~~~~~~~~Y~~~A~~~l~~l~~~y~~~~~~~~~glL~h~~~~~~~~~~~d~~~~~gDYy~~Eal~r~~~ 391 (397)
T 2zzr_A 323 EVDPDKETYKYAMHTMLRSLIEQYSNNELIAGRPLLLHGVYSWHSGKGVDEGNIWGDYYYLEALIRFYK 391 (397)
T ss_dssp TTCTTHHHHHHHHHHHHHHHHHHTBCCCCCTTCCSBCCEEEETTTTEEEEECBHHHHHHHHHHHHHHHS
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHhccCCCCCCceeeeceeeCCCCCCCCCCcchHHHHHHHHHHHHhc
Confidence 1 1 124556666665532 11 11111111122233322333332 467899999999865
No 83
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=61.25 E-value=7.5 Score=25.28 Aligned_cols=27 Identities=19% Similarity=0.185 Sum_probs=20.0
Q ss_pred HHHHHHHHhCCCCCChHHHHHHHHHHHhcccCC
Q 026485 161 WAMMSLIHAGQMERDPTPLHRAAKLLINSQLED 193 (238)
Q Consensus 161 ~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~~d 193 (238)
-++.||...+. .+++|++||++.+.+.
T Consensus 45 ~a~~AL~~~~~------nve~Ave~Ll~~~~p~ 71 (73)
T 1vg5_A 45 QVEVALAAADD------DLTVAVEILMSQSGPS 71 (73)
T ss_dssp HHHHHHHHHTS------CHHHHHHHHHTCSCSS
T ss_pred HHHHHHHHhCC------CHHHHHHHHHHCCCCC
Confidence 45667776653 4889999999987764
No 84
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=59.92 E-value=8.5 Score=25.11 Aligned_cols=26 Identities=15% Similarity=0.332 Sum_probs=18.6
Q ss_pred HHHHHHHhCCCCCChHHHHHHHHHHHhcccCC
Q 026485 162 AMMSLIHAGQMERDPTPLHRAAKLLINSQLED 193 (238)
Q Consensus 162 al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~~d 193 (238)
++.||...+. .+++|++||++.+-++
T Consensus 47 ~~~AL~~t~G------nve~Ave~L~~~~~~~ 72 (74)
T 1vej_A 47 NLQALVATDG------DIHAAIEMLLGASGPS 72 (74)
T ss_dssp HHHHHHHTTS------CHHHHHHHHHTCCCCC
T ss_pred HHHHHHHhCC------CHHHHHHHHHhCCCCC
Confidence 4566666543 4889999999977654
No 85
>2ahf_A Unsaturated glucuronyl hydrolase; alpha6/alpha6 barrel, glycoside hydrolase family 88; 1.52A {Bacillus SP} PDB: 2ahg_A* 2fv0_A* 2fv1_A* 2d5j_A 1vd5_A 2fuz_A
Probab=59.47 E-value=47 Score=28.54 Aligned_cols=134 Identities=12% Similarity=0.097 Sum_probs=73.0
Q ss_pred hHHHHHHHHHHHHHHHHhcccCCCCcccccc---c----c-hhhhHHHHHHHHHcccc---CccHHHHHHHHHHHHhcc-
Q 026485 61 TKEVKNFIAKATKFIEDIQKSDGSWYGSWGI---C----F-TYAAWFAISGLVAAKKT---YSNCLAIRKATDFLLKIQ- 128 (238)
Q Consensus 61 ~~~~~~~i~~a~~~L~~~Q~~dG~w~~~~~~---~----~-~~~T~~al~aL~~~g~~---~~~~~~i~~a~~~L~~~Q- 128 (238)
.++..+.+.++.++|...-++.+++--.|+. . . .-.+..-|.+|..++.. ....++..+.++++++..
T Consensus 106 ~~~~~~~~~~aA~~L~~r~~~~~g~i~sw~~~~~~~~~~~~iID~mmni~~L~~A~~~~gd~~y~~~A~~~a~~~l~~~~ 185 (377)
T 2ahf_A 106 DESARKLALDAADVLMRRWRADAGIIQAWGPKGDPENGGRIIIDCLLNLPLLLWAGEQTGDPEYRRVAEAHALKSRRFLV 185 (377)
T ss_dssp CHHHHHHHHHHHHHHHTTEETTTTEECCBSSTTCTTTTTEEEGGGGGGHHHHHHHHHHHCCTHHHHHHHHHHHHHHHHTB
T ss_pred CHHHHHHHHHHHHHHHHhCCCCCCeEEeccCCCCCCCCceEEechHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCc
Confidence 3456789999999999888888665444542 1 1 11233345666544321 225577788888888875
Q ss_pred ccCCCCCCCCCCC--CCCc---ccCCCCCCC---CHHHHHHHHHHHHHhCCCCCCh---HHHHHHHHHHHhcccCCCC
Q 026485 129 CEDGGWGESYRSC--PNKK---YIPLDGNRS---NLVQTAWAMMSLIHAGQMERDP---TPLHRAAKLLINSQLEDGD 195 (238)
Q Consensus 129 ~~dGgw~~~~~~~--~~~~---y~~~~~~~~---~~~~Ta~al~aL~~~g~~~~~~---~~v~~a~~~L~~~Q~~dGg 195 (238)
++||+......-. .+.. +.. +|-.. -.=..||++.+|..+-+...++ +...+..++++++...+|+
T Consensus 186 r~dgs~~h~~~~D~~tG~~~~~~t~-qG~~dds~WaRGqAw~i~gl~~ly~~T~d~~yL~~A~~la~~~l~~~~~d~~ 262 (377)
T 2ahf_A 186 RGDDSSYHTFYFDPENGNAIRGGTH-QGNTDGSTWTRGQAWGIYGFALNSRYLGNADLLETAKRMARHFLARVPEDGV 262 (377)
T ss_dssp BTTSCBCSEEEECTTTCCEEEEECS-SSSSTTSCBHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCTTSS
T ss_pred CCCCCeEEEEEeeCCCCCeeeCCCc-CCcCCcchhHHHHHHHHHHHHHHHHHHCChHHHHHHHHHHHHHHHhhHHhCC
Confidence 4567543221100 0000 000 01111 1235678888776653322233 2455567889998866676
No 86
>2p0v_A Hypothetical protein BT3781; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacteroides thetaiotaomicron vpi-5482} SCOP: a.102.1.8
Probab=58.39 E-value=60 Score=28.99 Aligned_cols=176 Identities=14% Similarity=0.055 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHhhCCC--cchHHHHHHHHHHHHHHHHhcccCC----------------------------------
Q 026485 40 ECTASALKAMTLFKKLYPK--HRTKEVKNFIAKATKFIEDIQKSDG---------------------------------- 83 (238)
Q Consensus 40 d~Ta~~l~aL~~~~~~~~~--~~~~~~~~~i~~a~~~L~~~Q~~dG---------------------------------- 83 (238)
|.+++.|.++..+-+...+ +-.+.....|+.+++++...|+.+|
T Consensus 180 DSla~~L~la~~Yy~~TgD~~~f~~~w~~av~~il~~l~~eq~~~~~~~~Y~F~r~t~~~~dtl~~~G~G~pv~~tGLi~ 259 (489)
T 2p0v_A 180 DSLCYPIRLAYHYWKTTGDASVFSDEWLQAIANVLKTFKEQQRKDDAKGPYRFQRKTERALDTMTNDGWGNPVKPVGLIA 259 (489)
T ss_dssp HHHHHHHHHHHHHHHHHCCCTTSSHHHHHHHHHHHHHHHHTTCSSCSSCSCCCCCCBSCGGGSCHHHHTCSCCCCSSCCC
T ss_pred hhhHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHHHHhcccCCCCCceEeecCCCcccccccCCCCCccCCCCcee
Q ss_pred -----CCcccccccchhhhHHHHHHHHHccccC--------------ccHHHHHHHHHHHHhccccCCCCCCCCCCCCCC
Q 026485 84 -----SWYGSWGICFTYAAWFAISGLVAAKKTY--------------SNCLAIRKATDFLLKIQCEDGGWGESYRSCPNK 144 (238)
Q Consensus 84 -----~w~~~~~~~~~~~T~~al~aL~~~g~~~--------------~~~~~i~~a~~~L~~~Q~~dGgw~~~~~~~~~~ 144 (238)
|.......-+++.-+++..+|..+.+.. .....|++++.=-.-..++.+|=-..+.+....
T Consensus 260 S~fRPSDDa~~yg~~ipSN~~a~v~L~~aaeia~~v~~d~~la~~~~~lA~eI~~gI~~~gv~~~p~~G~ifAyEVDG~G 339 (489)
T 2p0v_A 260 SAFRPSDDATTFQFLVPSNFFAVTSLRKAAEILNTVNRKPALAKECTALADEVEKALKKYAVCNHPKYGKIYAFEVDGFG 339 (489)
T ss_dssp CSBCTTSCBCSSSEEHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHHHHSEEEETTTEEEECSEECSSS
T ss_pred CCCCCCCcchhcCcchHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhCEecCCCCccEEEEEecCCC
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcccCCCCCCCCccccccCCccccccCCchhhHHHHH
Q 026485 145 KYIPLDGNRSNLVQTAWAMMSLIHAGQMERDPTPLHRAAKLLINSQLEDGDFPQQELTGVFMENCMLHYPIYRNIFPMWA 224 (238)
Q Consensus 145 ~y~~~~~~~~~~~~Ta~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~~dGgw~~~~~~~~~~~~~~~~~~~~~~~~~l~a 224 (238)
.+.- .....+.. |++|-..|....+.+...+.+++|++..|+ -++.|.+....=-.+.....+|++..
T Consensus 340 ~~~~--mDDanvpS----LLslPylG~~~~dDpiy~nTr~~IlS~~NP------yy~~G~~~~GIGspH~~~~~~Wpmsl 407 (489)
T 2p0v_A 340 NQLL--MDDANVPS----LIALPYLGDVKVTDPIYQNTRKFVWSEDNP------YFFKGSAGEGIGGPHIGYDMIWPMSI 407 (489)
T ss_dssp CEEC--CCCSSSSC----STTHHHHTSSCTTCHHHHHHHHHHTSTTST------TEEECSSCEEECCTTTCTTEECHHHH
T ss_pred Cccc--CCCCCccH----HHHHHHhCCCCCCCHHHHHHHHHHHhhcCC------cccccccccCCCCCCCCCCchHHHHH
Q ss_pred HHH
Q 026485 225 LAE 227 (238)
Q Consensus 225 L~~ 227 (238)
|-+
T Consensus 408 l~~ 410 (489)
T 2p0v_A 408 MMK 410 (489)
T ss_dssp HHH
T ss_pred HHH
No 87
>1gai_A Glucoamylase-471; hydrolase, glycosidase, polysaccharide degradation, glycoPro; HET: MAN NAG BMA GAC; 1.70A {Aspergillus awamori} SCOP: a.102.1.1 PDB: 1gah_A* 3gly_A* 1dog_A* 1glm_A* 1agm_A* 3eqa_A*
Probab=58.09 E-value=1e+02 Score=27.35 Aligned_cols=144 Identities=16% Similarity=0.130 Sum_probs=75.5
Q ss_pred HHHHHHHHHhcccCCCCc-----c---------cccccc--hhhhHHHHHHHH---HccccCccHHHHHHHHHHHHh---
Q 026485 69 AKATKFIEDIQKSDGSWY-----G---------SWGICF--TYAAWFAISGLV---AAKKTYSNCLAIRKATDFLLK--- 126 (238)
Q Consensus 69 ~~a~~~L~~~Q~~dG~w~-----~---------~~~~~~--~~~T~~al~aL~---~~g~~~~~~~~i~~a~~~L~~--- 126 (238)
.-+++.|+..-.++|... | .|+-.+ +...++++.+|. .+|.. +..++..+||..
T Consensus 12 ~~~~~~~l~ni~~~G~~~~~~~tGaiIASpttsnpDYrY~W~RDaa~t~~aL~~~~~~G~~----~~a~~~~~~l~~~~~ 87 (472)
T 1gai_A 12 TVARTAILNNIGADGAWVSGADSGIVVASPSTDNPDYFYTWTRDSGLVIKTLVDLFRNGDT----DLLSTIEHYISSQAI 87 (472)
T ss_dssp HHHHHHHHHTBTTTCTTCTTCCTTCBCSCSCBSSSBCCSEEHHHHHHHHHHHHHHHHTTCG----GGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCcccCCCCCCceEEeeCCCCCCCCeEEchhhHHHHHHHHHHHHhcCCH----HHHHHHHHHHHHHHH
Confidence 346777888877777651 1 122112 226889999998 77753 335667777766
Q ss_pred cc---ccCCCCC------CCCCCCCCCcccCCCCCCCCHHH-----HHHHHHHH--HHhCCCC----CChHHHHHHHHHH
Q 026485 127 IQ---CEDGGWG------ESYRSCPNKKYIPLDGNRSNLVQ-----TAWAMMSL--IHAGQME----RDPTPLHRAAKLL 186 (238)
Q Consensus 127 ~Q---~~dGgw~------~~~~~~~~~~y~~~~~~~~~~~~-----Ta~al~aL--~~~g~~~----~~~~~v~~a~~~L 186 (238)
.| +++|.|. ..+.+... .+.+. -+...... ++..+.++ ...+... ...+.|++.++||
T Consensus 88 lQ~~~~~~G~l~~~glgE~~y~vdG~-~~~~~-w~~~Q~D~~g~ra~~~~~~~~~l~~~g~~~~~~~~~w~~i~~~l~~v 165 (472)
T 1gai_A 88 IQGVSNPSGDLSSGGLGEPKFNVDET-AYTGS-WGRPQRDGPALRATAMIGFGQWLLDNGYTSAATEIVWPLVRNDLSYV 165 (472)
T ss_dssp HHHCCBTTBCTTTTGGGCCEECTTSC-BCCSC-CSCCCTHHHHHHHHHHHHHHHHHHHTTCHHHHHHTHHHHHHHHHHHH
T ss_pred hhcccCCCCccccCCCCCceEccCCC-ccCCc-CCCccccccchhHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHH
Confidence 34 6788876 22222111 11100 01122223 34444443 2333321 0124699999999
Q ss_pred HhcccC--CCCCCCCccccccCCccccccCCchhhHHHHHHHHHH
Q 026485 187 INSQLE--DGDFPQQELTGVFMENCMLHYPIYRNIFPMWALAEYR 229 (238)
Q Consensus 187 ~~~Q~~--dGgw~~~~~~~~~~~~~~~~~~~~~~~~~l~aL~~~~ 229 (238)
.+.=+. .|=|.+.. |. +.++.+++..||-+..
T Consensus 166 ~~~w~~pd~dlWEer~--g~---------~~~T~~~~~~AL~~aa 199 (472)
T 1gai_A 166 AQYWNQTGYDLWEEVN--GS---------SFFTIAVQHRALVEGS 199 (472)
T ss_dssp HHHTTSCEECTTSCCE--EE---------EHHHHHHHHHHHHHHH
T ss_pred HHhcCCCCCCCCcccC--CC---------CHHHHHHHHHHHHHHH
Confidence 876553 36687653 22 2234566666665543
No 88
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=57.27 E-value=8.6 Score=24.16 Aligned_cols=27 Identities=22% Similarity=0.332 Sum_probs=19.8
Q ss_pred HHHHHHHHhCCCCCChHHHHHHHHHHHhcccCC
Q 026485 161 WAMMSLIHAGQMERDPTPLHRAAKLLINSQLED 193 (238)
Q Consensus 161 ~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~~d 193 (238)
-|+.||...+. .+++|++||++.+.+.
T Consensus 25 ~a~~AL~~~~~------nve~A~e~L~~~~~~~ 51 (63)
T 1wji_A 25 ASRQALMDNGN------NLEAALNVLLTSNKQK 51 (63)
T ss_dssp HHHHHHHHTTS------CHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHhCC------CHHHHHHHHHHCCCCc
Confidence 35677777653 3889999999977553
No 89
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=57.10 E-value=8.3 Score=23.22 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=18.1
Q ss_pred HHHHHHHHhCCCCCChHHHHHHHHHHHhcc
Q 026485 161 WAMMSLIHAGQMERDPTPLHRAAKLLINSQ 190 (238)
Q Consensus 161 ~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q 190 (238)
-++.||...+. .+++|++||++.+
T Consensus 28 ~~~~AL~~t~g------nve~Ave~L~~~~ 51 (53)
T 2knz_A 28 ANLQALIATGG------DINAAIERLLGSQ 51 (53)
T ss_dssp HHHHHHHHHTS------CHHHHHHHHHHCC
T ss_pred HHHHHHHHhCC------CHHHHHHHHHHcC
Confidence 45777777654 4889999999864
No 90
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=56.66 E-value=11 Score=24.43 Aligned_cols=27 Identities=19% Similarity=0.180 Sum_probs=20.6
Q ss_pred HHHHHHHHccccCccHHHHHHHHHHHHhccccC
Q 026485 99 FAISGLVAAKKTYSNCLAIRKATDFLLKIQCED 131 (238)
Q Consensus 99 ~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~d 131 (238)
.++.||...+.. +++|++||+..|.++
T Consensus 45 ~a~~AL~~~~~n------ve~Ave~Ll~~~~p~ 71 (73)
T 1vg5_A 45 QVEVALAAADDD------LTVAVEILMSQSGPS 71 (73)
T ss_dssp HHHHHHHHHTSC------HHHHHHHHHTCSCSS
T ss_pred HHHHHHHHhCCC------HHHHHHHHHHCCCCC
Confidence 477788776643 689999999987664
No 91
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=54.33 E-value=12 Score=24.17 Aligned_cols=26 Identities=19% Similarity=0.212 Sum_probs=18.6
Q ss_pred HHHHHHHHhCCCCCChHHHHHHHHHHHhcccC
Q 026485 161 WAMMSLIHAGQMERDPTPLHRAAKLLINSQLE 192 (238)
Q Consensus 161 ~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~~ 192 (238)
-|..||...+. .+++|++||++++..
T Consensus 45 ~a~~AL~~t~~------nve~Ave~L~~~~~d 70 (73)
T 1wiv_A 45 VARKALKASGG------DIEKATDWVFNNSGP 70 (73)
T ss_dssp HHHHHHHHTTS------CHHHHHHHHHHSCCS
T ss_pred HHHHHHHHhCC------CHHHHHHHHHhCCCC
Confidence 34566766543 488999999997754
No 92
>2g0d_A Nisin biosynthesis protein NISC; alpha toroid, alpha barrel, biosynthetic protein; 2.21A {Lactococcus lactis subsp} SCOP: a.102.6.1 PDB: 2g02_A
Probab=54.17 E-value=89 Score=26.54 Aligned_cols=24 Identities=17% Similarity=0.213 Sum_probs=18.2
Q ss_pred cHHHHHHHHHHHHhccc--cCCC-CCC
Q 026485 113 NCLAIRKATDFLLKIQC--EDGG-WGE 136 (238)
Q Consensus 113 ~~~~i~~a~~~L~~~Q~--~dGg-w~~ 136 (238)
..+.++++++|+++.+. ++|. |..
T Consensus 228 ~~~~~~~~~~~l~~~~~~~~~g~~wp~ 254 (409)
T 2g0d_A 228 SLSALQKIIFIYEKFELERKKQFLWKD 254 (409)
T ss_dssp HHHHHHHHHHHHHHHCCCGGGTTCCCS
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcCCC
Confidence 56789999999977654 6777 644
No 93
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=53.97 E-value=15 Score=22.29 Aligned_cols=25 Identities=16% Similarity=0.195 Sum_probs=18.2
Q ss_pred HHHHHHHccccCccHHHHHHHHHHHHhcccc
Q 026485 100 AISGLVAAKKTYSNCLAIRKATDFLLKIQCE 130 (238)
Q Consensus 100 al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~ 130 (238)
++.||...+-. +++|++||.+....
T Consensus 27 n~~AL~~~~Gd------v~~Ave~L~~~~~~ 51 (54)
T 2dah_A 27 NLQALIATGGD------VDAAVEKLRQSSGP 51 (54)
T ss_dssp HHHHHHHHTSC------HHHHHHHHHHHSCS
T ss_pred HHHHHHHcCCC------HHHHHHHHHhCCCc
Confidence 56777766544 68999999987543
No 94
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=53.57 E-value=15 Score=23.08 Aligned_cols=27 Identities=19% Similarity=0.235 Sum_probs=19.1
Q ss_pred HHHHHHHHccccCccHHHHHHHHHHHHhcccc
Q 026485 99 FAISGLVAAKKTYSNCLAIRKATDFLLKIQCE 130 (238)
Q Consensus 99 ~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~ 130 (238)
.+..||...+.. .+++|++||++++.+
T Consensus 35 ~a~~AL~~t~~~-----nve~A~ewL~~~~~d 61 (64)
T 2cpw_A 35 RAQKALASTGGR-----SVQTACDWLFSHSGP 61 (64)
T ss_dssp HHHHHHHHTTTS-----CHHHHHHHHHSCCSC
T ss_pred HHHHHHHHcCCC-----CHHHHHHHHHhCCCC
Confidence 466777776531 278999999998754
No 95
>2zzr_A Unsaturated glucuronyl hydrolase; alpha barrel; 1.75A {Streptococcus agalactiae} PDB: 3anj_A 3ank_A* 3ani_A*
Probab=51.53 E-value=38 Score=29.39 Aligned_cols=135 Identities=12% Similarity=0.051 Sum_probs=72.8
Q ss_pred hHHHHHHHHHHHHHHHHhcccCCCCcccccc---cc----hhhhHHHHHHHHHcccc---CccHHHHHHHHHHHHhccc-
Q 026485 61 TKEVKNFIAKATKFIEDIQKSDGSWYGSWGI---CF----TYAAWFAISGLVAAKKT---YSNCLAIRKATDFLLKIQC- 129 (238)
Q Consensus 61 ~~~~~~~i~~a~~~L~~~Q~~dG~w~~~~~~---~~----~~~T~~al~aL~~~g~~---~~~~~~i~~a~~~L~~~Q~- 129 (238)
.++..+.+.++.++|...-++.|++-..|+. .. .-.+.+-+.+|..++.. ....+...+..+++++...
T Consensus 132 ~~~~~~~~~~aA~~L~~r~~~~~g~iqsw~~~~~~~~~~~iID~~mni~~L~~A~~~~gd~~y~~~A~~ha~~~l~~~~r 211 (397)
T 2zzr_A 132 DVKALEATIKAADKLMERYQEKGGFIQAWGELGYKEHYRLIIDCLLNIQLLFFAYEQTGDEKYRQVAVNHFYASANNVVR 211 (397)
T ss_dssp CHHHHHHHHHHHHHHHTTEETTTTEECCSSSTTCGGGCEEETTHHHHTHHHHHHHHHHCCHHHHHHHHHHHHHHHHHTBC
T ss_pred CHHHHHHHHHHHHHHHHHhCcCCCEEEecccCCCCCCCceeechHhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCcC
Confidence 3456789999999999888888877555542 01 11345566677655432 1244666777788877664
Q ss_pred cCCCCCCCCCCC-CCCcccC--CCCCCCC----HHHHHHHHHHHHHhCCCCCChH---HHHHHHHHHHhcccCCCC
Q 026485 130 EDGGWGESYRSC-PNKKYIP--LDGNRSN----LVQTAWAMMSLIHAGQMERDPT---PLHRAAKLLINSQLEDGD 195 (238)
Q Consensus 130 ~dGgw~~~~~~~-~~~~y~~--~~~~~~~----~~~Ta~al~aL~~~g~~~~~~~---~v~~a~~~L~~~Q~~dGg 195 (238)
+||+......-. .+....+ ...+-.+ .=..||++.+|..+-+...+++ ...+..++++++-..+|+
T Consensus 212 ~dgs~~h~~~~d~~~G~~~~~~t~qGy~dds~WaRGqAw~i~gl~~lY~~T~d~~yL~~A~~la~~~l~~~~~d~~ 287 (397)
T 2zzr_A 212 DDSSAFHTFYFDPETGEPLKGVTRQGYSDESSWARGQAWGIYGIPLSYRKMKDYQQIILFKGMTNYFLNRLPEDKV 287 (397)
T ss_dssp TTSCBCSEEEECTTTCCEEEEECTTSSSTTSCBHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTCCTTSC
T ss_pred CCCCeEEEEEeeCCCCCcccCCcccccCcchhhHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHhCC
Confidence 456532211100 0000000 0001122 2367888888877533222333 344456788887655564
No 96
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=50.45 E-value=13 Score=23.43 Aligned_cols=28 Identities=18% Similarity=0.135 Sum_probs=20.9
Q ss_pred HHHHHHHHHhCCCCCChHHHHHHHHHHHhcccC
Q 026485 160 AWAMMSLIHAGQMERDPTPLHRAAKLLINSQLE 192 (238)
Q Consensus 160 a~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~~ 192 (238)
.-|..||...+.. .++.|++||++++..
T Consensus 24 ~~a~~AL~~t~n~-----~~e~A~~wL~~h~~d 51 (64)
T 2crn_A 24 HTALKALAATGRK-----TAEEALAWLHDHCND 51 (64)
T ss_dssp HHHHHHHHHHTSC-----CHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHhCCC-----CHHHHHHHHHhCCCC
Confidence 4567788877652 488899999998753
No 97
>3k7x_A LIN0763 protein; Q92DQ0, LKR23, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.89A {Listeria innocua}
Probab=50.44 E-value=57 Score=27.52 Aligned_cols=166 Identities=10% Similarity=-0.073 Sum_probs=80.9
Q ss_pred hHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHhcccCCCCcccccccchhhhHHHHHHHHHcc---ccCccHHHH
Q 026485 41 CTASALKAMTLFKKLYPKHRTKEVKNFIAKATKFIEDIQKSDGSWYGSWGICFTYAAWFAISGLVAAK---KTYSNCLAI 117 (238)
Q Consensus 41 ~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~~dG~w~~~~~~~~~~~T~~al~aL~~~g---~~~~~~~~i 117 (238)
-++.++.+|..+.+.. .++++.+.+.++++++... .+|.|... +...-++.++++..+- .....-+..
T Consensus 47 W~a~~~~~l~d~~~~t---gd~~y~~~a~~~~~~~~~~--~~~~~~~~----~~DD~a~~~la~~~aye~t~~~~yL~~A 117 (349)
T 3k7x_A 47 WLAHLVEVRLDAYLRT---KKQADLEVAEKTYLHNKNR--NGGTLIHD----FYDDMLWNALAAYRLYKATGKSIYLEDA 117 (349)
T ss_dssp HHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHHHHH--TTSSSCCS----BHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHhc--CCCCCCcc----CccHHHHHHHHHHHHHHHHCCchHHHHH
Confidence 3778888888876542 3445678888899988774 33445322 2223344334444332 221234556
Q ss_pred HHHHHHH-Hhcccc--CCCCCCCCCCCCCCcccCCCCCCCCHHHHHHHHHHHHHhCCCCCCh---HHHHHHHHHHHhcc-
Q 026485 118 RKATDFL-LKIQCE--DGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMERDP---TPLHRAAKLLINSQ- 190 (238)
Q Consensus 118 ~~a~~~L-~~~Q~~--dGgw~~~~~~~~~~~y~~~~~~~~~~~~Ta~al~aL~~~g~~~~~~---~~v~~a~~~L~~~Q- 190 (238)
++..++| ...-.+ .||+. |... . + ....+...+.++.++..+.....++ +..++..+|+.+.-
T Consensus 118 ~~l~~~l~~~~wd~~~gGGi~--W~~~--~-~-----~~knaisN~~~~~~la~l~~~tgd~~Yl~~A~~~~~w~~~~l~ 187 (349)
T 3k7x_A 118 QLVWQDLVDTGWNDIMGGGFA--WRRP--Q-M-----YYKNTPVNAPFIILSCWLYNELNETKYLEWAMKTYEWQTKVLV 187 (349)
T ss_dssp HHHHHHHHHHTBCSGGGSCBE--EETT--E-E-----EEEEHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHB
T ss_pred HHHHHHHHHhCCCCCCCCceE--ecCC--C-c-----cccchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCC
Confidence 6677888 443332 25531 1110 0 0 0112334444555444432211122 36677788998754
Q ss_pred cCCCCCCCCccccccCCccccc---cCCchhhHHHHHHHHH
Q 026485 191 LEDGDFPQQELTGVFMENCMLH---YPIYRNIFPMWALAEY 228 (238)
Q Consensus 191 ~~dGgw~~~~~~~~~~~~~~~~---~~~~~~~~~l~aL~~~ 228 (238)
+++|.+.+... . ...|.+. -.+|.+.+.|.++...
T Consensus 188 d~~g~v~Dg~~-~--~~~g~~~~~~~~tYnqg~~l~g~~~L 225 (349)
T 3k7x_A 188 REDGFVEDGIN-R--LEDGTIDYEWKFTYNQGVYIGANLEL 225 (349)
T ss_dssp CTTSCBCCEEC-T--TSSSCBCTTCCCHHHHHHHHHHHHHH
T ss_pred CCCCeEecCCc-c--CCCCccCCcCeeeHHHHHHHHHHHHH
Confidence 34544322111 0 0123322 2445567777777654
No 98
>3eu8_A Putative glucoamylase; YP_210071.1, structural genomics, JOI for structural genomics, JCSG; 2.12A {Bacteroides fragilis nctc 9343}
Probab=46.66 E-value=1.1e+02 Score=26.92 Aligned_cols=89 Identities=15% Similarity=0.070 Sum_probs=56.9
Q ss_pred cchHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHhcccCCCCcc-------------ccc-ccchhhhHHHHHHH
Q 026485 39 VECTASALKAMTLFKKLYPKHRTKEVKNFIAKATKFIEDIQKSDGSWYG-------------SWG-ICFTYAAWFAISGL 104 (238)
Q Consensus 39 ~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~~dG~w~~-------------~~~-~~~~~~T~~al~aL 104 (238)
+.-++..|.|+....+. --...++.-+.+.+.+++|.+..+-.|-|+. .|. ...+-.|++.+.+|
T Consensus 64 ~tniGfgL~A~~vA~e~-G~I~r~ea~~R~~~tL~~l~~~~r~~G~fyhwyD~~Tg~~lpf~~~d~~~StVDTa~L~~Gl 142 (430)
T 3eu8_A 64 SGGSGFGIMAILAGIDR-GYVSREEGLRRMEKIVGFLEKADRFKGAYPHWWNGETGHVQPFGQKDNGGDLVETAFLMQGL 142 (430)
T ss_dssp HHHHHHHHHHHHHHHHT-TSSCHHHHHHHHHHHHHHHHHSCCBTTBCCSEEETTTCCBCCBTTTBCSEEHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHhchhcCCcCccccCCCCCCcCCCCcccCcccHHHHHHHHHHH
Confidence 34466677777665443 2233455568899999999999988999852 111 12234688888888
Q ss_pred HHccccC----ccHHHHHHHHHHHHhcc
Q 026485 105 VAAKKTY----SNCLAIRKATDFLLKIQ 128 (238)
Q Consensus 105 ~~~g~~~----~~~~~i~~a~~~L~~~Q 128 (238)
+.+.... +.++.|+.-++-|.+..
T Consensus 143 L~ar~YF~~~~~~E~~i~~~~~~L~~~v 170 (430)
T 3eu8_A 143 LAVHQYYAEGSAEEKKLAGRIDKLWREV 170 (430)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHhC
Confidence 7766421 13455777777777754
No 99
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=45.42 E-value=16 Score=22.83 Aligned_cols=28 Identities=18% Similarity=0.208 Sum_probs=20.5
Q ss_pred HHHHHHHHHhCCCCCChHHHHHHHHHHHhcccC
Q 026485 160 AWAMMSLIHAGQMERDPTPLHRAAKLLINSQLE 192 (238)
Q Consensus 160 a~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~~ 192 (238)
..|..||...+.. .+++|++||++++..
T Consensus 24 ~~a~~AL~~t~~~-----nve~A~ewLl~~~~d 51 (64)
T 1whc_A 24 GRAEKALALTGNQ-----GIEAAMDWLMEHEDD 51 (64)
T ss_dssp HHHHHHHHHHTSC-----CHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCC-----CHHHHHHHHHhCCCC
Confidence 4567788877532 488999999997653
No 100
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=42.63 E-value=17 Score=24.27 Aligned_cols=24 Identities=25% Similarity=0.105 Sum_probs=17.1
Q ss_pred HHHHHHHhCCCCCChHHHHHHHHHHHhccc
Q 026485 162 AMMSLIHAGQMERDPTPLHRAAKLLINSQL 191 (238)
Q Consensus 162 al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~ 191 (238)
|..||...+. .+++|++||++++.
T Consensus 46 A~~AL~~t~g------dve~A~e~L~sh~~ 69 (83)
T 1veg_A 46 AEAALRVFGG------NVQLAAQTLAHHGG 69 (83)
T ss_dssp HHHHHHHTTT------CHHHHHHHHHHHTS
T ss_pred HHHHHHHcCC------CHHHHHHHHHhCCC
Confidence 4556665542 48899999999765
No 101
>2g0d_A Nisin biosynthesis protein NISC; alpha toroid, alpha barrel, biosynthetic protein; 2.21A {Lactococcus lactis subsp} SCOP: a.102.6.1 PDB: 2g02_A
Probab=42.22 E-value=1.6e+02 Score=24.94 Aligned_cols=26 Identities=12% Similarity=0.153 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHhcc--cCCC-Ccc
Q 026485 62 KEVKNFIAKATKFIEDIQK--SDGS-WYG 87 (238)
Q Consensus 62 ~~~~~~i~~a~~~L~~~Q~--~dG~-w~~ 87 (238)
++..+.+.++++|+.+.+. ++|. |+.
T Consensus 226 ~~~~~~~~~~~~~l~~~~~~~~~g~~wp~ 254 (409)
T 2g0d_A 226 EASLSALQKIIFIYEKFELERKKQFLWKD 254 (409)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGTTCCCS
T ss_pred hhHHHHHHHHHHHHHHHHhcCCCCCcCCC
Confidence 3456889999999977544 6788 744
No 102
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=42.07 E-value=18 Score=21.09 Aligned_cols=21 Identities=24% Similarity=0.370 Sum_probs=15.7
Q ss_pred HHHHHHHhCCCCCChHHHHHHHHHHHh
Q 026485 162 AMMSLIHAGQMERDPTPLHRAAKLLIN 188 (238)
Q Consensus 162 al~aL~~~g~~~~~~~~v~~a~~~L~~ 188 (238)
++.||...+. .+++|++||.+
T Consensus 25 ~~~AL~~~~g------nv~~Ave~L~~ 45 (46)
T 2bwb_A 25 NVAALRRSGG------SVQGALDSLLN 45 (46)
T ss_dssp HHHHHHHHTT------CHHHHHHHHHC
T ss_pred HHHHHHHhCC------CHHHHHHHHHc
Confidence 4677777653 48899999985
No 103
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=42.06 E-value=19 Score=20.34 Aligned_cols=23 Identities=26% Similarity=0.232 Sum_probs=16.6
Q ss_pred HHHHHHHHhCCCCCChHHHHHHHHHHHhc
Q 026485 161 WAMMSLIHAGQMERDPTPLHRAAKLLINS 189 (238)
Q Consensus 161 ~al~aL~~~g~~~~~~~~v~~a~~~L~~~ 189 (238)
-++.||...+. .+++|++||++.
T Consensus 20 ~a~~AL~~~~~------n~e~A~~~L~~~ 42 (43)
T 2g3q_A 20 EAHNALEKCNW------DLEAATNFLLDS 42 (43)
T ss_dssp HHHHHHHHHTS------CHHHHHHHHHTC
T ss_pred HHHHHHHHhCc------CHHHHHHHHHcC
Confidence 45677777643 478899999863
No 104
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=41.86 E-value=51 Score=19.93 Aligned_cols=29 Identities=14% Similarity=0.091 Sum_probs=21.3
Q ss_pred HHHHHHHHHhCCCCCChHHHHHHHHHHHhcccCC
Q 026485 160 AWAMMSLIHAGQMERDPTPLHRAAKLLINSQLED 193 (238)
Q Consensus 160 a~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~~d 193 (238)
..|-.||...+.. -++.|++||...-.++
T Consensus 24 erae~Alk~Tg~~-----Gle~AmewL~k~~~~~ 52 (54)
T 2cos_A 24 EMAGRALKQTGSR-----SIEAALEYISKMSGPS 52 (54)
T ss_dssp HHHHHHHHHHTSC-----CHHHHHHHHHHHSCSC
T ss_pred HHHHHHHHHhCcc-----cHHHHHHHHHHhcCCC
Confidence 3567778877764 3888999999866554
No 105
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=41.66 E-value=15 Score=22.03 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=16.5
Q ss_pred HHHHHHHHhCCCCCChHHHHHHHHHHHhc
Q 026485 161 WAMMSLIHAGQMERDPTPLHRAAKLLINS 189 (238)
Q Consensus 161 ~al~aL~~~g~~~~~~~~v~~a~~~L~~~ 189 (238)
-++.||...+. .+++|++||++.
T Consensus 29 ~~~~AL~~t~g------n~e~A~e~L~~~ 51 (52)
T 2jy5_A 29 ANLQALIATGG------DINAAIERLLGS 51 (52)
T ss_dssp HHHHHHHHHTT------CHHHHHHHHTTC
T ss_pred HHHHHHHHhCC------CHHHHHHHHHhC
Confidence 45677777654 388999999763
No 106
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=41.60 E-value=19 Score=22.13 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=15.6
Q ss_pred HHHHHHHhCCCCCChHHHHHHHHHHHhc
Q 026485 162 AMMSLIHAGQMERDPTPLHRAAKLLINS 189 (238)
Q Consensus 162 al~aL~~~g~~~~~~~~v~~a~~~L~~~ 189 (238)
++.||...+. .+++|++||++.
T Consensus 35 ~~~AL~~~~g------nve~Ave~L~~~ 56 (58)
T 1wr1_B 35 NVAALRRSGG------SVQGALDSLLNG 56 (58)
T ss_dssp HHHHHHHHTS------CHHHHHHHHHHT
T ss_pred HHHHHHHhCC------CHHHHHHHHHhC
Confidence 4566666543 488999999873
No 107
>2fba_A Glucoamylase Glu1; (alpha-alpha)6 barrel, TRIS, hydrolase; 1.10A {Saccharomycopsis fibuligera} SCOP: a.102.1.1 PDB: 1ayx_A* 2f6d_A
Probab=41.21 E-value=1.9e+02 Score=25.63 Aligned_cols=44 Identities=7% Similarity=-0.013 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHH---HHHhcccCCCCc
Q 026485 41 CTASALKAMTLFKKLYPKHRTKEVKNFIAKATKF---IEDIQKSDGSWY 86 (238)
Q Consensus 41 ~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~~a~~~---L~~~Q~~dG~w~ 86 (238)
..+.++.+|..++... . ..+.+.+.+++-++| |....+++|.|.
T Consensus 70 Daa~t~~aL~~~g~~~-~-~~~~l~~~a~~y~~~~~~lq~~~~~~G~~~ 116 (492)
T 2fba_A 70 DSAITFLTVLSELEDN-N-FNTTLAKAVEYYINTSYNLQRTSNPSGSFD 116 (492)
T ss_dssp HHHHHHHHHHHHHHHT-T-TCHHHHHHHHHHHHHHHHHHTSCBTTBCTT
T ss_pred hHHHHHHHHHHhCccc-c-cccchHHHHHHHHHHHHHHhcccCCCCCcC
Confidence 4788888888877421 1 111234567777776 444447888885
No 108
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.59 E-value=21 Score=23.06 Aligned_cols=27 Identities=7% Similarity=0.025 Sum_probs=19.8
Q ss_pred HHHHHHHHhCCCCCChHHHHHHHHHHHhcccC
Q 026485 161 WAMMSLIHAGQMERDPTPLHRAAKLLINSQLE 192 (238)
Q Consensus 161 ~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~~ 192 (238)
-|..||...+.. .+++|++||++++..
T Consensus 25 ~a~~AL~~t~n~-----~ve~A~ewL~~~~~d 51 (74)
T 2dag_A 25 ACRKAVYYTGNS-----GAEAAMNWVMSHMDD 51 (74)
T ss_dssp HHHHHHHHHTSC-----CHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhCCC-----CHHHHHHHHHhCCCC
Confidence 456777777542 388999999997754
No 109
>4fnv_A Heparinase III protein, heparitin sulfate lyase; toroid fold, -sandwich fold, heparan sulfate degradation; 1.60A {Bacteroides thetaiotaomicron}
Probab=39.03 E-value=2.4e+02 Score=26.21 Aligned_cols=18 Identities=22% Similarity=0.379 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHhcccCCC
Q 026485 177 TPLHRAAKLLINSQLEDG 194 (238)
Q Consensus 177 ~~v~~a~~~L~~~Q~~dG 194 (238)
+.++|++.||+....+||
T Consensus 344 ~~L~km~~~l~~l~~PDG 361 (702)
T 4fnv_A 344 EPLRKAAEVVMYFTYPNY 361 (702)
T ss_dssp HHHHHHHHHHHHTSCGGG
T ss_pred HHHHHHHHHHHHHcCCCC
Confidence 589999999999999999
No 110
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.48 E-value=31 Score=19.89 Aligned_cols=22 Identities=32% Similarity=0.564 Sum_probs=15.7
Q ss_pred HHHHHHHHccccCccHHHHHHHHHHHHhc
Q 026485 99 FAISGLVAAKKTYSNCLAIRKATDFLLKI 127 (238)
Q Consensus 99 ~al~aL~~~g~~~~~~~~i~~a~~~L~~~ 127 (238)
.+..||...+ . +++|++||+++
T Consensus 25 ~a~~AL~~~~-n------~e~A~~~L~~h 46 (47)
T 2ekk_A 25 HAMEALLNTS-T------MEQATEYLLTH 46 (47)
T ss_dssp HHHHHHHHSC-S------HHHHHHHHHTC
T ss_pred HHHHHHHHcC-C------HHHHHHHHHcC
Confidence 3667777764 2 68999999864
No 111
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.33 E-value=22 Score=22.11 Aligned_cols=26 Identities=19% Similarity=0.363 Sum_probs=18.9
Q ss_pred HHHHHHHHccccCccHHHHHHHHHHHHhcccc
Q 026485 99 FAISGLVAAKKTYSNCLAIRKATDFLLKIQCE 130 (238)
Q Consensus 99 ~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~ 130 (238)
.+..||...+.. +++|++||+.++.+
T Consensus 25 ~a~~AL~~t~~n------ve~A~e~L~~~~~d 50 (63)
T 2dak_A 25 QALKALRATNNS------LERAVDWIFSHIDD 50 (63)
T ss_dssp HHHHHHHHTTSC------SHHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCC------HHHHHHHHHhCCCC
Confidence 466777776532 67999999998754
No 112
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.26 E-value=37 Score=22.47 Aligned_cols=26 Identities=15% Similarity=0.233 Sum_probs=19.1
Q ss_pred HHHHHHHHccccCccHHHHHHHHHHHHhcccc
Q 026485 99 FAISGLVAAKKTYSNCLAIRKATDFLLKIQCE 130 (238)
Q Consensus 99 ~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~ 130 (238)
.+..||...+.. +++|++||++++.+
T Consensus 45 ~a~~AL~~t~~n------ve~A~ewL~~~~~d 70 (83)
T 2dai_A 45 RATKALQLNHMS------VPQAMEWLIEHAED 70 (83)
T ss_dssp HHHHHHHHTTSC------HHHHHHHHHHGGGC
T ss_pred HHHHHHHHhCCC------HHHHHHHHHHCCCC
Confidence 467777776432 78999999998753
No 113
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=34.63 E-value=30 Score=22.95 Aligned_cols=26 Identities=12% Similarity=0.114 Sum_probs=17.9
Q ss_pred HHHHHHHHhCCCCCChHHHHHHHHHHHhccc
Q 026485 161 WAMMSLIHAGQMERDPTPLHRAAKLLINSQL 191 (238)
Q Consensus 161 ~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~ 191 (238)
-|..||...+.. .+++|++||++++.
T Consensus 45 ~a~~AL~~t~n~-----n~e~A~ewL~~h~~ 70 (84)
T 1vek_A 45 HCQKAAINTSNA-----GVEEAMNWLLSHMD 70 (84)
T ss_dssp HHHHHHHHTTTC-----CHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCC-----CHHHHHHHHHhCCC
Confidence 345666665432 48899999999764
No 114
>3a0o_A Oligo alginate lyase; alpha/alpha ballel+anti-parallel beta sheet; 2.11A {Agrobacterium tumefaciens} PDB: 3afl_A*
Probab=34.42 E-value=2e+02 Score=26.80 Aligned_cols=84 Identities=12% Similarity=0.172 Sum_probs=44.6
Q ss_pred HHHHHHHHHccccCccHHHHHHHHHHHHhc---c-ccCCCCCCCCCCCCCCcccCCCCCCCCHHHHHHH---HHHHHH-h
Q 026485 98 WFAISGLVAAKKTYSNCLAIRKATDFLLKI---Q-CEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWA---MMSLIH-A 169 (238)
Q Consensus 98 ~~al~aL~~~g~~~~~~~~i~~a~~~L~~~---Q-~~dGgw~~~~~~~~~~~y~~~~~~~~~~~~Ta~a---l~aL~~-~ 169 (238)
+..+.||+..++.......++++++.|... - .+||+|.+.. .|. .+.+.+. +.+|.. .
T Consensus 319 ~l~~aalal~~e~~~a~~wl~~a~~~l~~~l~~~~~~DG~~~EG~------~Y~--------~~~~~~~~~~~~~l~~~~ 384 (776)
T 3a0o_A 319 VLTPACIALQGESDEAGEWLDYTVEFLATLYSPWAGTDGGWAEGP------HYW--------MTGMAYLIEAANLIRSYI 384 (776)
T ss_dssp THHHHHHHHTTSCHHHHHHHHHHHHHHHHTCCTTBCTTSCBTTCH------HHH--------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCcHHHHHHHHHHHHHHHHhcccccCCCCCCccch------hHH--------HHHHHHHHHHHHHHHHhh
Confidence 444555554443322345677777765443 2 5788876531 111 1222222 223322 2
Q ss_pred CCCCCChHHHHHHHHHHHhcccCCCC
Q 026485 170 GQMERDPTPLHRAAKLLINSQLEDGD 195 (238)
Q Consensus 170 g~~~~~~~~v~~a~~~L~~~Q~~dGg 195 (238)
+...-..+.+++...|+.....++|.
T Consensus 385 g~d~~~~p~l~~~~~~~~~~~~p~g~ 410 (776)
T 3a0o_A 385 GYDLYQRPFFQNTGRFPLYTKAPGTR 410 (776)
T ss_dssp CCCGGGSHHHHHTTHHHHHHSCTTCS
T ss_pred CcchhhCHhHHHHHHHHHHeeCCCCc
Confidence 32211124899999999999999885
No 115
>1ut9_A Cellulose 1,4-beta-cellobiosidase; hydrolase, glycoside hydrolase, family 9, cellobiohydrolase; 2.1A {Clostridium thermocellum} SCOP: a.102.1.2 b.1.18.2 PDB: 1rq5_A*
Probab=34.26 E-value=1.2e+02 Score=27.77 Aligned_cols=19 Identities=21% Similarity=0.244 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHhccccCC
Q 026485 114 CLAIRKATDFLLKIQCEDG 132 (238)
Q Consensus 114 ~~~i~~a~~~L~~~Q~~dG 132 (238)
-++++=+++||+++|.++|
T Consensus 230 ldeikwg~D~llk~q~~~g 248 (609)
T 1ut9_A 230 LDEARWEIEFFKKMQVTEK 248 (609)
T ss_dssp HHHHHHHHHHHHHHBCCTT
T ss_pred HHHHHHHHHHHHHhccCCC
Confidence 4667888999999999887
No 116
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=33.31 E-value=19 Score=21.14 Aligned_cols=22 Identities=23% Similarity=0.268 Sum_probs=15.9
Q ss_pred HHHHHHHHhCCCCCChHHHHHHHHHHHh
Q 026485 161 WAMMSLIHAGQMERDPTPLHRAAKLLIN 188 (238)
Q Consensus 161 ~al~aL~~~g~~~~~~~~v~~a~~~L~~ 188 (238)
-+..||...+. .+++|++||++
T Consensus 24 ~a~~AL~~~~~------n~e~A~e~L~~ 45 (49)
T 1ify_A 24 RVVAALRASYN------NPHRAVEYLLT 45 (49)
T ss_dssp HHHHHHHTTTS------CSHHHHHHHHH
T ss_pred HHHHHHHHhCC------CHHHHHHHHHh
Confidence 45677776543 37789999987
No 117
>1gai_A Glucoamylase-471; hydrolase, glycosidase, polysaccharide degradation, glycoPro; HET: MAN NAG BMA GAC; 1.70A {Aspergillus awamori} SCOP: a.102.1.1 PDB: 1gah_A* 3gly_A* 1dog_A* 1glm_A* 1agm_A* 3eqa_A*
Probab=33.31 E-value=2.1e+02 Score=25.21 Aligned_cols=24 Identities=13% Similarity=0.218 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHhcccc--CCCCCCC
Q 026485 114 CLAIRKATDFLLKIQCE--DGGWGES 137 (238)
Q Consensus 114 ~~~i~~a~~~L~~~Q~~--dGgw~~~ 137 (238)
-+.|+++++||.+.=++ -|-|.+.
T Consensus 155 w~~i~~~l~~v~~~w~~pd~dlWEer 180 (472)
T 1gai_A 155 WPLVRNDLSYVAQYWNQTGYDLWEEV 180 (472)
T ss_dssp HHHHHHHHHHHHHHTTSCEECTTSCC
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCccc
Confidence 36699999999886443 2556543
No 118
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=29.23 E-value=43 Score=23.42 Aligned_cols=23 Identities=17% Similarity=0.336 Sum_probs=17.2
Q ss_pred HHHHHHHHhCCCCCChHHHHHHHHHHHhc
Q 026485 161 WAMMSLIHAGQMERDPTPLHRAAKLLINS 189 (238)
Q Consensus 161 ~al~aL~~~g~~~~~~~~v~~a~~~L~~~ 189 (238)
-++.||...+. .+++||+||++.
T Consensus 83 ~ni~AL~~t~G------dve~AVe~L~~~ 105 (108)
T 2cwb_A 83 LSLRALQATGG------DIQAALELIFAG 105 (108)
T ss_dssp HHHHHHHHHTS------CHHHHHHHHHHT
T ss_pred HHHHHHHHhCC------CHHHHHHHHHhc
Confidence 45677777653 488999999983
No 119
>4fnv_A Heparinase III protein, heparitin sulfate lyase; toroid fold, -sandwich fold, heparan sulfate degradation; 1.60A {Bacteroides thetaiotaomicron}
Probab=28.78 E-value=2.5e+02 Score=26.17 Aligned_cols=20 Identities=15% Similarity=0.187 Sum_probs=18.5
Q ss_pred cHHHHHHHHHHHHhccccCC
Q 026485 113 NCLAIRKATDFLLKIQCEDG 132 (238)
Q Consensus 113 ~~~~i~~a~~~L~~~Q~~dG 132 (238)
..+.++|++.||+....+||
T Consensus 342 ~~~~L~km~~~l~~l~~PDG 361 (702)
T 4fnv_A 342 FTEPLRKAAEVVMYFTYPNY 361 (702)
T ss_dssp TTHHHHHHHHHHHHTSCGGG
T ss_pred HHHHHHHHHHHHHHHcCCCC
Confidence 46889999999999999999
No 120
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=26.33 E-value=59 Score=22.53 Aligned_cols=33 Identities=12% Similarity=0.240 Sum_probs=25.0
Q ss_pred HHHHHHHHhCCCCCChHHHHHHHHHHHhcccCCCCCCCC
Q 026485 161 WAMMSLIHAGQMERDPTPLHRAAKLLINSQLEDGDFPQQ 199 (238)
Q Consensus 161 ~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~~dGgw~~~ 199 (238)
-|..||..++. .+.+|+.+|++.....|.|...
T Consensus 56 eAr~AL~~~ng------Dl~~AI~~Lleg~~~~~~W~~~ 88 (104)
T 1wj7_A 56 ECVIALHDCNG------DVNRAINVLLEGNPDTHSWEMV 88 (104)
T ss_dssp HHHHHHHHHTS------CHHHHHHHHHTCSSSCSSCSSC
T ss_pred HHHHHHHHcCC------CHHHHHHHHHhCCCcCCceeee
Confidence 46778887654 4889999999876656889754
No 121
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=26.27 E-value=49 Score=21.96 Aligned_cols=15 Identities=20% Similarity=0.432 Sum_probs=12.3
Q ss_pred HHHHHHHHHHhcccC
Q 026485 178 PLHRAAKLLINSQLE 192 (238)
Q Consensus 178 ~v~~a~~~L~~~Q~~ 192 (238)
.+++|++||+++..+
T Consensus 48 n~e~A~ewL~~h~~D 62 (85)
T 2dkl_A 48 NLDQAMSALLEKKVD 62 (85)
T ss_dssp CHHHHHHHHHTTSCC
T ss_pred CHHHHHHHHHHCcCC
Confidence 488999999997654
No 122
>2z07_A Putative uncharacterized protein TTHA0978; uncharacterized conserved protein, structural genomics, NPPSFA; 2.10A {Thermus thermophilus}
Probab=24.67 E-value=3.2e+02 Score=23.08 Aligned_cols=65 Identities=12% Similarity=-0.007 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHhcccCCCCccc-c-cccchhhhHHHHHHHHHccccCccHHHHHHHHHHHHhccccCCCCC
Q 026485 67 FIAKATKFIEDIQKSDGSWYGS-W-GICFTYAAWFAISGLVAAKKTYSNCLAIRKATDFLLKIQCEDGGWG 135 (238)
Q Consensus 67 ~i~~a~~~L~~~Q~~dG~w~~~-~-~~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~dGgw~ 135 (238)
..++++.-|..+.+.....++. + .......+++++++|+..+. ..+.+..++++...|.++|...
T Consensus 4 l~~~a~~~l~~n~~~~~~vP~~~~f~~~~~wDs~~~~~gl~~~~~----~~a~~~l~~~~~~~q~~~G~ip 70 (420)
T 2z07_A 4 LRTKAVEVLQRNSRGAFTVPAHGLYPYQWLWDSAFIALGWTQVDW----ERAWQELLCLFDYGQGPDGMLP 70 (420)
T ss_dssp HHHHHHHHHHHHBCSSCBCSSTTCCSCEEHHHHHHHHHHHTTTCH----HHHHHHHHHHHHHHCCTTCCCC
T ss_pred HHHHHHHHHHHcCCCCCcCCCCCCCCCccHHHHHHHHHHHHhcCH----HHHHHHHHHHHHHHHhhCCCcc
Confidence 3567777777663321112221 1 12234578888888876542 2334444444433899999875
No 123
>3a0o_A Oligo alginate lyase; alpha/alpha ballel+anti-parallel beta sheet; 2.11A {Agrobacterium tumefaciens} PDB: 3afl_A*
Probab=23.86 E-value=1.6e+02 Score=27.54 Aligned_cols=69 Identities=10% Similarity=0.139 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHH---hc-ccCCCCcccccccc-hhhhHH---HHHHHHH-ccccCccHHHHHHHHHHHHhccccCCCC
Q 026485 64 VKNFIAKATKFIED---IQ-KSDGSWYGSWGICF-TYAAWF---AISGLVA-AKKTYSNCLAIRKATDFLLKIQCEDGGW 134 (238)
Q Consensus 64 ~~~~i~~a~~~L~~---~Q-~~dG~w~~~~~~~~-~~~T~~---al~aL~~-~g~~~~~~~~i~~a~~~L~~~Q~~dGgw 134 (238)
.+..++++++.|.. .- .+||+|... ..+ .+.+.. .+.+|.. .|...-..+.++++..|++....++|..
T Consensus 334 a~~wl~~a~~~l~~~l~~~~~~DG~~~EG--~~Y~~~~~~~~~~~~~~l~~~~g~d~~~~p~l~~~~~~~~~~~~p~g~~ 411 (776)
T 3a0o_A 334 AGEWLDYTVEFLATLYSPWAGTDGGWAEG--PHYWMTGMAYLIEAANLIRSYIGYDLYQRPFFQNTGRFPLYTKAPGTRR 411 (776)
T ss_dssp HHHHHHHHHHHHHHTCCTTBCTTSCBTTC--HHHHHHHHHHHHHHHHHHHHHHCCCGGGSHHHHHTTHHHHHHSCTTCSS
T ss_pred HHHHHHHHHHHHHHhcccccCCCCCCccc--hhHHHHHHHHHHHHHHHHHHhhCcchhhCHhHHHHHHHHHHeeCCCCcE
Confidence 44677777776554 23 688988532 221 223322 2233322 2332224578999999999999998754
No 124
>2okx_A Rhamnosidase B; alpha barrel, glycoside hydrolase family 78, I hydrolase; 1.90A {Bacillus SP}
Probab=23.70 E-value=1.6e+02 Score=28.47 Aligned_cols=85 Identities=12% Similarity=0.178 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHhcccCCCCcc----cccccchhhhHHHHHHHHHccccCccH-
Q 026485 40 ECTASALKAMTLFKKLYPKHRTKEVKNFIAKATKFIEDIQKSDGSWYG----SWGICFTYAAWFAISGLVAAKKTYSNC- 114 (238)
Q Consensus 40 d~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~~dG~w~~----~~~~~~~~~T~~al~aL~~~g~~~~~~- 114 (238)
|....++.++..++.. +..++.+++|...|.+||.++. .+.....-.+...+.++..+-....+.
T Consensus 579 D~~~~a~~~l~~~g~~----------~lar~~L~~l~~~Q~~dG~ip~~~p~~~~~~~~~~~~~~i~~~~~yy~~tGD~~ 648 (956)
T 2okx_A 579 DSRNEALVNYYVFGET----------EIVERCLNLVPGSADETPLYLDQVPSAWSSVIPNWTFFWILACREYAAHTGNEA 648 (956)
T ss_dssp HHHHHHHHHHHHTCCC----------HHHHHHHHHGGGGTTTCTTCCSBSSCSSCCCCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHcCCH----------HHHHHHHHHHHhhcccCCCcCccccccccCCCcChHHHHHHHHHHHHHHhCCHH
Q ss_pred ------HHHHHHHHHHHhccccCCCC
Q 026485 115 ------LAIRKATDFLLKIQCEDGGW 134 (238)
Q Consensus 115 ------~~i~~a~~~L~~~Q~~dGgw 134 (238)
+.++++++|+.+...++|-|
T Consensus 649 ~L~e~yp~lk~~l~~~~~~~d~~GLl 674 (956)
T 2okx_A 649 FAARIWPAVKHTLTHYLEHIDDSGLL 674 (956)
T ss_dssp HHHHHHHHHHHHHHHHHTTBCTTSSB
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCE
No 125
>3e7j_A Heparinase II protein; alpha and beta lyase, alpha6/alpha6 incomplete toroid, sugar protein, lyase; HET: NAG GCU GCD; 2.10A {Pedobacter heparinus} PDB: 3e80_A* 2fut_A* 2fuq_A*
Probab=22.97 E-value=3.9e+02 Score=25.10 Aligned_cols=18 Identities=17% Similarity=-0.012 Sum_probs=15.5
Q ss_pred HHHHHHHHHHhcccCCCC
Q 026485 178 PLHRAAKLLINSQLEDGD 195 (238)
Q Consensus 178 ~v~~a~~~L~~~Q~~dGg 195 (238)
-+++...|++..+.++|-
T Consensus 261 ~l~k~a~y~l~~~~p~g~ 278 (749)
T 3e7j_A 261 GQQFILYDAIYKRRPDGQ 278 (749)
T ss_dssp GGGGTTHHHHHTBCTTSC
T ss_pred HHHHHHHHHHHeeCCCCc
Confidence 688999999998888875
No 126
>2zbl_A Putative isomerase; N-acyl-D-glucosamine 2-epimerase protein family; HET: BMA; 1.60A {Salmonella typhimurium} PDB: 2afa_A 2rgk_A*
Probab=21.61 E-value=83 Score=27.04 Aligned_cols=70 Identities=14% Similarity=0.069 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHhCCCC--CChHHHHHHHHHHHhcccC--CCCCCCCccccccCCccccccCCchhhHHHHHHHHH
Q 026485 156 LVQTAWAMMSLIHAGQME--RDPTPLHRAAKLLINSQLE--DGDFPQQELTGVFMENCMLHYPIYRNIFPMWALAEY 228 (238)
Q Consensus 156 ~~~Ta~al~aL~~~g~~~--~~~~~v~~a~~~L~~~Q~~--dGgw~~~~~~~~~~~~~~~~~~~~~~~~~l~aL~~~ 228 (238)
+...+..|.++..+.... .-.+.++++++||++.-.. .|||-.......-+.. .-.+|...+.+.||..|
T Consensus 50 ~~~nar~i~~~a~a~~~g~~~~l~~A~~~~~fl~~~~~D~~~GG~~~s~d~dg~~~~---~k~lyd~Af~i~al~~~ 123 (421)
T 2zbl_A 50 LWITARMLHVYSVAASMGRPGAYDLVDHGIKAMNGALRDKKYGGWYACVNDQGVVDA---SKQGYQHFFALLGAASA 123 (421)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHTTTTBCTTTSSBCSEEETTEEEEC---CEEHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHhccCcCCCeEEEEeCCCCCcCC---chhHHHHHHHHHHHHHH
Confidence 556666666665543221 1125788999999987544 3788754322221111 23455678999999885
No 127
>3c5t_B Exendin-4, exenatide; ligand-bound G protein-coupled receptor extracellular domain protein coupled receptor, glycoprotein, membrane; HET: 10M; 2.10A {Homo sapiens} SCOP: j.6.1.1 PDB: 3c59_B*
Probab=20.56 E-value=88 Score=16.59 Aligned_cols=17 Identities=18% Similarity=0.002 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHhcccc
Q 026485 114 CLAIRKATDFLLKIQCE 130 (238)
Q Consensus 114 ~~~i~~a~~~L~~~Q~~ 130 (238)
+.++++-++||++.+..
T Consensus 8 ~~aakdFv~WL~ngk~~ 24 (31)
T 3c5t_B 8 EEAVRLFIEWLKNGGPS 24 (31)
T ss_dssp HHHHHHHHHHHHTTGGG
T ss_pred HHHHHHHHHHHHhCCCC
Confidence 46778889999987743
Done!