Query 026486
Match_columns 238
No_of_seqs 363 out of 3269
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 08:37:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026486.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026486hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1533 Predicted GTPase [Gene 100.0 2.8E-57 6.1E-62 375.7 15.2 235 1-237 1-241 (290)
2 KOG1534 Putative transcription 100.0 2.4E-55 5.3E-60 359.1 14.6 234 1-237 2-239 (273)
3 PF03029 ATP_bind_1: Conserved 100.0 1.4E-46 3E-51 321.2 13.5 222 7-237 1-225 (238)
4 KOG1532 GTPase XAB1, interacts 100.0 1.6E-32 3.5E-37 232.9 14.7 215 2-221 19-235 (366)
5 COG1126 GlnQ ABC-type polar am 100.0 4E-31 8.6E-36 218.4 10.4 161 3-172 29-224 (240)
6 COG1120 FepC ABC-type cobalami 100.0 5.5E-31 1.2E-35 225.4 8.8 164 3-175 29-230 (258)
7 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 5.8E-30 1.3E-34 218.3 10.3 148 4-160 32-215 (254)
8 PRK13768 GTPase; Provisional 100.0 7.3E-27 1.6E-31 201.5 22.4 232 1-237 1-235 (253)
9 COG1125 OpuBA ABC-type proline 100.0 1.4E-28 3.1E-33 207.5 9.6 161 4-172 29-224 (309)
10 COG1131 CcmA ABC-type multidru 100.0 4.3E-28 9.4E-33 213.2 11.6 157 3-168 32-221 (293)
11 COG4555 NatA ABC-type Na+ tran 100.0 3.5E-28 7.6E-33 198.9 9.2 149 3-160 29-209 (245)
12 COG1116 TauB ABC-type nitrate/ 99.9 1.2E-27 2.7E-32 202.0 11.5 147 3-157 30-204 (248)
13 COG1135 AbcC ABC-type metal io 99.9 1.7E-27 3.6E-32 206.0 10.5 163 4-175 34-233 (339)
14 COG1127 Ttg2A ABC-type transpo 99.9 2E-27 4.3E-32 199.2 10.4 158 3-168 35-230 (263)
15 COG1124 DppF ABC-type dipeptid 99.9 2.2E-27 4.8E-32 199.3 10.3 158 3-168 34-226 (252)
16 COG1136 SalX ABC-type antimicr 99.9 1.7E-26 3.7E-31 194.2 15.0 145 4-157 33-215 (226)
17 PRK13537 nodulation ABC transp 99.9 4.2E-27 9E-32 208.2 11.4 157 3-168 34-222 (306)
18 TIGR01188 drrA daunorubicin re 99.9 6.1E-27 1.3E-31 206.7 10.1 157 3-168 20-208 (302)
19 PRK13536 nodulation factor exp 99.9 9.9E-27 2.1E-31 208.5 10.6 159 3-170 68-258 (340)
20 COG1122 CbiO ABC-type cobalt t 99.9 3.6E-27 7.8E-32 200.8 7.2 162 4-174 32-229 (235)
21 COG3638 ABC-type phosphate/pho 99.9 1.5E-26 3.2E-31 193.4 10.2 158 4-170 32-234 (258)
22 TIGR02314 ABC_MetN D-methionin 99.9 2.4E-26 5.2E-31 206.1 10.4 161 4-173 33-230 (343)
23 COG0411 LivG ABC-type branched 99.9 1.1E-26 2.5E-31 195.1 7.4 168 3-179 31-245 (250)
24 TIGR00960 3a0501s02 Type II (G 99.9 5.6E-26 1.2E-30 191.0 11.2 144 3-155 30-209 (216)
25 COG3840 ThiQ ABC-type thiamine 99.9 3.5E-26 7.5E-31 184.6 9.0 157 3-168 26-214 (231)
26 COG3839 MalK ABC-type sugar tr 99.9 2.9E-26 6.3E-31 203.2 8.8 150 4-162 31-212 (338)
27 COG3842 PotA ABC-type spermidi 99.9 4.7E-26 1E-30 202.8 10.1 150 4-162 33-215 (352)
28 cd03261 ABC_Org_Solvent_Resist 99.9 6.1E-26 1.3E-30 193.2 10.4 150 3-161 27-214 (235)
29 PRK11650 ugpC glycerol-3-phosp 99.9 4.8E-26 1E-30 205.2 9.9 155 4-167 32-218 (356)
30 TIGR01288 nodI ATP-binding ABC 99.9 6.9E-26 1.5E-30 200.1 10.2 156 3-167 31-218 (303)
31 cd03259 ABC_Carb_Solutes_like 99.9 9.8E-26 2.1E-30 189.1 10.4 145 3-156 27-203 (213)
32 PRK13651 cobalt transporter AT 99.9 1.2E-25 2.6E-30 198.8 11.4 166 4-178 35-259 (305)
33 cd03226 ABC_cobalt_CbiO_domain 99.9 8.4E-26 1.8E-30 188.6 9.9 144 3-155 27-197 (205)
34 cd03219 ABC_Mj1267_LivG_branch 99.9 1.1E-25 2.3E-30 191.6 10.7 149 3-160 27-219 (236)
35 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.9 1.2E-25 2.5E-30 189.2 10.7 143 3-155 31-211 (218)
36 cd03266 ABC_NatA_sodium_export 99.9 1.6E-25 3.4E-30 188.4 11.1 145 3-156 32-208 (218)
37 cd03265 ABC_DrrA DrrA is the A 99.9 1.5E-25 3.3E-30 189.0 10.9 149 3-160 27-208 (220)
38 PRK13643 cbiO cobalt transport 99.9 6E-26 1.3E-30 199.2 8.6 166 4-178 34-238 (288)
39 COG4559 ABC-type hemin transpo 99.9 2.2E-25 4.7E-30 183.9 11.1 164 3-173 28-230 (259)
40 TIGR02673 FtsE cell division A 99.9 3.1E-25 6.7E-30 186.1 12.0 144 3-155 29-208 (214)
41 PRK09536 btuD corrinoid ABC tr 99.9 1.4E-25 3.1E-30 204.7 10.5 161 3-172 30-227 (402)
42 TIGR03265 PhnT2 putative 2-ami 99.9 1.4E-25 3E-30 202.1 10.2 156 3-167 31-218 (353)
43 cd03218 ABC_YhbG The ABC trans 99.9 1.5E-25 3.3E-30 190.2 10.0 149 3-160 27-209 (232)
44 cd03269 ABC_putative_ATPase Th 99.9 2.6E-25 5.7E-30 186.1 11.2 145 3-156 27-200 (210)
45 COG1118 CysA ABC-type sulfate/ 99.9 1.1E-25 2.4E-30 194.4 8.9 161 4-173 30-227 (345)
46 TIGR03522 GldA_ABC_ATP gliding 99.9 2.1E-25 4.5E-30 196.9 11.0 156 3-168 29-216 (301)
47 cd03292 ABC_FtsE_transporter F 99.9 3.1E-25 6.7E-30 186.0 11.4 144 3-155 28-207 (214)
48 cd03293 ABC_NrtD_SsuB_transpor 99.9 1.8E-25 3.8E-30 188.6 9.6 145 3-156 31-204 (220)
49 COG4604 CeuD ABC-type enteroch 99.9 1.7E-25 3.7E-30 182.7 9.0 160 4-172 29-224 (252)
50 TIGR01184 ntrCD nitrate transp 99.9 4.4E-25 9.6E-30 187.6 11.8 157 3-168 12-199 (230)
51 cd03268 ABC_BcrA_bacitracin_re 99.9 3.6E-25 7.8E-30 185.0 11.0 145 3-156 27-198 (208)
52 PRK13631 cbiO cobalt transport 99.9 2.6E-25 5.7E-30 197.8 10.6 167 3-178 53-270 (320)
53 TIGR01186 proV glycine betaine 99.9 2.3E-25 5.1E-30 200.9 10.3 155 3-166 20-212 (363)
54 COG4152 ABC-type uncharacteriz 99.9 4.8E-25 1E-29 185.2 11.4 161 3-172 29-218 (300)
55 PRK11153 metN DL-methionine tr 99.9 2.2E-25 4.9E-30 200.1 10.1 157 3-168 32-225 (343)
56 TIGR03258 PhnT 2-aminoethylpho 99.9 2.3E-25 4.9E-30 201.2 10.0 156 4-168 33-223 (362)
57 PRK13637 cbiO cobalt transport 99.9 1.6E-25 3.5E-30 196.4 8.5 160 4-172 35-233 (287)
58 PRK11000 maltose/maltodextrin 99.9 2.4E-25 5.3E-30 201.6 9.9 152 3-163 30-213 (369)
59 cd03258 ABC_MetN_methionine_tr 99.9 2.8E-25 6.2E-30 188.7 9.7 149 3-160 32-217 (233)
60 PRK11432 fbpC ferric transport 99.9 2.8E-25 6E-30 199.9 9.9 153 3-164 33-217 (351)
61 PRK13634 cbiO cobalt transport 99.9 4.2E-25 9.1E-30 194.0 10.8 162 3-173 34-235 (290)
62 cd03262 ABC_HisP_GlnQ_permease 99.9 5.8E-25 1.3E-29 184.2 11.1 144 3-155 27-206 (213)
63 PRK13647 cbiO cobalt transport 99.9 2.7E-25 5.8E-30 193.8 9.4 156 3-167 32-221 (274)
64 cd03225 ABC_cobalt_CbiO_domain 99.9 5.5E-25 1.2E-29 184.2 10.9 144 3-155 28-205 (211)
65 cd03296 ABC_CysA_sulfate_impor 99.9 3.6E-25 7.8E-30 189.0 9.7 145 3-156 29-209 (239)
66 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.9 7E-25 1.5E-29 185.7 11.3 145 3-156 49-214 (224)
67 PRK10851 sulfate/thiosulfate t 99.9 3.7E-25 8E-30 199.3 10.1 156 4-168 30-221 (353)
68 cd03301 ABC_MalK_N The N-termi 99.9 4.7E-25 1E-29 184.9 10.0 143 3-154 27-201 (213)
69 COG2884 FtsE Predicted ATPase 99.9 1.4E-24 2.9E-29 176.4 12.2 133 4-142 30-198 (223)
70 PRK13646 cbiO cobalt transport 99.9 2.2E-25 4.8E-30 195.4 8.3 162 3-173 34-235 (286)
71 PRK09452 potA putrescine/sperm 99.9 3.9E-25 8.5E-30 200.4 10.0 156 4-168 42-229 (375)
72 cd03224 ABC_TM1139_LivF_branch 99.9 5.5E-25 1.2E-29 185.5 10.1 150 3-161 27-209 (222)
73 cd03298 ABC_ThiQ_thiamine_tran 99.9 6.5E-25 1.4E-29 183.9 10.2 145 3-156 25-201 (211)
74 cd03263 ABC_subfamily_A The AB 99.9 7.8E-25 1.7E-29 184.4 10.7 146 3-158 29-206 (220)
75 PRK09493 glnQ glutamine ABC tr 99.9 5E-25 1.1E-29 188.1 9.6 148 4-160 29-212 (240)
76 PRK13641 cbiO cobalt transport 99.9 2.9E-25 6.4E-30 194.7 8.2 156 4-168 35-229 (287)
77 cd03235 ABC_Metallic_Cations A 99.9 3.5E-25 7.6E-30 185.8 8.3 145 3-156 26-204 (213)
78 TIGR02315 ABC_phnC phosphonate 99.9 6.6E-25 1.4E-29 187.5 10.0 145 3-156 29-218 (243)
79 cd03256 ABC_PhnC_transporter A 99.9 7.7E-25 1.7E-29 186.8 10.4 145 3-156 28-217 (241)
80 cd03294 ABC_Pro_Gly_Bertaine T 99.9 3.3E-25 7.1E-30 192.7 8.1 146 3-157 51-234 (269)
81 TIGR01166 cbiO cobalt transpor 99.9 2.7E-24 5.9E-29 177.4 13.1 130 3-137 19-184 (190)
82 cd03295 ABC_OpuCA_Osmoprotecti 99.9 1E-24 2.2E-29 186.5 10.8 145 3-156 28-208 (242)
83 PRK11629 lolD lipoprotein tran 99.9 7.9E-25 1.7E-29 186.2 10.1 138 3-149 36-211 (233)
84 PRK13650 cbiO cobalt transport 99.9 1.1E-24 2.5E-29 190.3 11.2 155 4-168 35-224 (279)
85 PRK11248 tauB taurine transpor 99.9 3.3E-24 7.2E-29 185.1 13.9 146 3-157 28-202 (255)
86 PRK10908 cell division protein 99.9 1.2E-24 2.6E-29 183.7 10.8 144 3-155 29-208 (222)
87 cd03231 ABC_CcmA_heme_exporter 99.9 4.2E-24 9.1E-29 178.0 13.9 144 3-155 27-196 (201)
88 cd03264 ABC_drug_resistance_li 99.9 1E-24 2.2E-29 182.7 10.2 143 4-156 27-201 (211)
89 PRK11247 ssuB aliphatic sulfon 99.9 9.9E-25 2.1E-29 188.6 10.4 152 3-163 39-213 (257)
90 TIGR03740 galliderm_ABC gallid 99.9 1.6E-24 3.5E-29 183.0 11.4 150 3-161 27-201 (223)
91 PRK11300 livG leucine/isoleuci 99.9 8.6E-25 1.9E-29 188.2 9.6 145 3-156 32-226 (255)
92 cd03297 ABC_ModC_molybdenum_tr 99.9 1.2E-24 2.7E-29 182.7 10.3 144 4-156 25-204 (214)
93 PRK13638 cbiO cobalt transport 99.9 4.3E-25 9.3E-30 192.0 7.7 157 3-168 28-220 (271)
94 PRK10895 lipopolysaccharide AB 99.9 1.6E-24 3.4E-29 185.2 10.9 150 3-161 30-214 (241)
95 PRK13649 cbiO cobalt transport 99.9 5.3E-25 1.2E-29 192.2 8.1 153 3-163 34-224 (280)
96 TIGR02211 LolD_lipo_ex lipopro 99.9 1.1E-24 2.4E-29 183.6 9.7 136 3-147 32-205 (221)
97 PRK11831 putative ABC transpor 99.9 1.2E-24 2.6E-29 189.1 10.2 150 3-161 34-221 (269)
98 PRK10070 glycine betaine trans 99.9 9.4E-25 2E-29 199.2 10.0 153 3-164 55-245 (400)
99 PRK11144 modC molybdate transp 99.9 8.8E-25 1.9E-29 196.9 9.5 154 3-165 25-210 (352)
100 PRK11264 putative amino-acid A 99.9 1.5E-24 3.3E-29 186.1 10.5 146 3-157 30-217 (250)
101 TIGR02142 modC_ABC molybdenum 99.9 1.2E-24 2.6E-29 196.2 10.0 153 3-164 24-212 (354)
102 TIGR03415 ABC_choXWV_ATP choli 99.9 1.4E-24 3.1E-29 196.8 10.5 161 3-172 51-253 (382)
103 PRK15079 oligopeptide ABC tran 99.9 1E-24 2.2E-29 194.9 9.3 157 4-168 49-246 (331)
104 PRK13538 cytochrome c biogenes 99.9 7.6E-24 1.6E-28 176.8 14.0 138 3-149 28-194 (204)
105 TIGR03864 PQQ_ABC_ATP ABC tran 99.9 2.9E-24 6.4E-29 183.0 11.5 142 3-154 28-202 (236)
106 COG1117 PstB ABC-type phosphat 99.9 4.7E-24 1E-28 176.1 12.1 158 3-168 34-232 (253)
107 PRK11607 potG putrescine trans 99.9 1.6E-24 3.6E-29 196.5 10.3 153 4-165 47-231 (377)
108 PRK13543 cytochrome c biogenes 99.9 1E-23 2.2E-28 177.4 14.4 143 4-155 39-208 (214)
109 PRK15112 antimicrobial peptide 99.9 9.3E-25 2E-29 189.6 8.4 150 3-160 40-226 (267)
110 TIGR03411 urea_trans_UrtD urea 99.9 3.2E-24 7E-29 183.2 11.3 146 3-158 29-216 (242)
111 PRK13639 cbiO cobalt transport 99.9 9.5E-25 2.1E-29 190.4 8.2 156 3-167 29-220 (275)
112 cd03260 ABC_PstB_phosphate_tra 99.9 1.1E-24 2.4E-29 184.4 8.2 151 3-161 27-217 (227)
113 TIGR03608 L_ocin_972_ABC putat 99.9 5.9E-24 1.3E-28 177.2 12.5 134 3-145 25-195 (206)
114 PRK13636 cbiO cobalt transport 99.9 1E-24 2.2E-29 191.0 7.9 157 3-168 33-226 (283)
115 TIGR03410 urea_trans_UrtE urea 99.9 2.4E-24 5.1E-29 182.8 9.8 145 3-156 27-204 (230)
116 TIGR01277 thiQ thiamine ABC tr 99.9 2.9E-24 6.2E-29 180.4 10.2 145 3-156 25-201 (213)
117 PRK10771 thiQ thiamine transpo 99.9 1.6E-24 3.5E-29 184.2 8.7 146 3-157 26-203 (232)
118 PRK11124 artP arginine transpo 99.9 2.9E-24 6.4E-29 183.6 10.3 146 3-157 29-214 (242)
119 TIGR03771 anch_rpt_ABC anchore 99.9 2.4E-24 5.1E-29 182.4 9.6 145 3-156 7-185 (223)
120 PRK13548 hmuV hemin importer A 99.9 2.2E-24 4.9E-29 186.3 9.6 149 3-160 29-217 (258)
121 PRK14250 phosphate ABC transpo 99.9 1.1E-24 2.3E-29 186.4 7.4 148 4-160 31-208 (241)
122 PRK13652 cbiO cobalt transport 99.9 2.8E-24 6.1E-29 187.6 10.1 156 3-167 31-221 (277)
123 cd03257 ABC_NikE_OppD_transpor 99.9 4.3E-24 9.3E-29 180.6 10.7 146 3-157 32-219 (228)
124 TIGR02769 nickel_nikE nickel i 99.9 3.7E-24 8.1E-29 185.6 10.6 148 3-158 38-225 (265)
125 PRK11614 livF leucine/isoleuci 99.9 2.5E-24 5.3E-29 183.5 9.2 146 3-157 32-210 (237)
126 TIGR01189 ccmA heme ABC export 99.9 2.6E-23 5.7E-28 172.7 14.9 130 3-137 27-184 (198)
127 TIGR01187 potA spermidine/putr 99.9 1.9E-24 4.2E-29 192.7 8.6 148 7-163 1-180 (325)
128 PRK10619 histidine/lysine/argi 99.9 3E-24 6.6E-29 185.2 9.5 146 3-156 32-224 (257)
129 PRK11308 dppF dipeptide transp 99.9 2.2E-24 4.8E-29 192.4 8.9 158 3-168 42-239 (327)
130 cd03267 ABC_NatA_like Similar 99.9 6.4E-24 1.4E-28 181.2 11.1 145 3-156 48-226 (236)
131 cd03215 ABC_Carb_Monos_II This 99.9 8.4E-24 1.8E-28 173.6 11.3 129 3-156 27-176 (182)
132 TIGR01978 sufC FeS assembly AT 99.9 5E-24 1.1E-28 182.0 10.3 145 3-155 27-216 (243)
133 cd03237 ABC_RNaseL_inhibitor_d 99.9 1.1E-23 2.3E-28 181.1 12.3 145 3-156 26-188 (246)
134 TIGR02770 nickel_nikD nickel i 99.9 3.8E-24 8.2E-29 181.8 9.3 148 3-157 13-199 (230)
135 PRK10762 D-ribose transporter 99.9 6.3E-24 1.4E-28 199.4 11.6 152 3-163 31-220 (501)
136 cd03230 ABC_DR_subfamily_A Thi 99.9 4.2E-24 9.2E-29 174.0 9.1 129 3-154 27-165 (173)
137 PRK10584 putative ABC transpor 99.9 7E-24 1.5E-28 179.6 10.7 136 3-147 37-210 (228)
138 PRK13645 cbiO cobalt transport 99.9 2.1E-24 4.5E-29 189.4 7.6 153 4-165 39-232 (289)
139 COG1137 YhbG ABC-type (unclass 99.9 3.2E-25 6.9E-30 181.4 2.2 161 3-172 31-227 (243)
140 PRK15439 autoinducer 2 ABC tra 99.9 6.5E-24 1.4E-28 199.8 11.3 151 3-162 38-218 (510)
141 PRK10575 iron-hydroxamate tran 99.9 3.7E-24 8.1E-29 185.6 8.8 151 3-162 38-226 (265)
142 COG4598 HisP ABC-type histidin 99.9 4.6E-24 1E-28 172.2 8.4 160 4-172 34-240 (256)
143 COG0410 LivF ABC-type branched 99.9 3.2E-24 7E-29 179.0 7.6 162 3-171 30-224 (237)
144 PRK13540 cytochrome c biogenes 99.9 6.7E-23 1.4E-27 170.6 15.6 130 3-137 28-184 (200)
145 PRK13644 cbiO cobalt transport 99.9 4.4E-24 9.5E-29 186.1 8.5 151 3-163 29-214 (274)
146 PRK11231 fecE iron-dicitrate t 99.9 6.9E-24 1.5E-28 182.8 9.6 150 3-161 29-215 (255)
147 PRK13546 teichoic acids export 99.9 1.1E-23 2.5E-28 182.7 11.0 150 3-161 51-220 (264)
148 TIGR03005 ectoine_ehuA ectoine 99.9 6.2E-24 1.3E-28 182.7 9.3 146 3-157 27-220 (252)
149 PRK13635 cbiO cobalt transport 99.9 4.7E-24 1E-28 186.4 8.4 150 4-163 35-219 (279)
150 TIGR00972 3a0107s01c2 phosphat 99.9 7.6E-24 1.7E-28 181.6 9.5 149 3-159 28-218 (247)
151 PRK09700 D-allose transporter 99.9 1.1E-23 2.5E-28 198.0 11.2 152 3-163 32-224 (510)
152 PRK13541 cytochrome c biogenes 99.9 7.9E-23 1.7E-27 169.5 14.9 130 3-137 27-180 (195)
153 PRK13633 cobalt transporter AT 99.9 5.2E-24 1.1E-28 186.2 8.3 155 4-168 38-228 (280)
154 PRK09700 D-allose transporter 99.9 9.5E-24 2.1E-28 198.6 10.5 150 3-161 290-486 (510)
155 TIGR03873 F420-0_ABC_ATP propo 99.9 1.2E-23 2.7E-28 181.3 10.3 151 3-162 28-215 (256)
156 PRK13539 cytochrome c biogenes 99.9 7.2E-23 1.6E-27 171.4 14.6 130 3-137 29-184 (207)
157 cd03229 ABC_Class3 This class 99.9 6.9E-24 1.5E-28 173.5 8.3 131 3-154 27-171 (178)
158 PRK13549 xylose transporter AT 99.9 1.6E-23 3.5E-28 196.9 11.8 156 3-167 32-226 (506)
159 PRK10253 iron-enterobactin tra 99.9 1.1E-23 2.4E-28 182.7 9.8 150 3-161 34-221 (265)
160 cd03300 ABC_PotA_N PotA is an 99.9 1.8E-23 3.9E-28 177.8 10.8 146 3-157 27-204 (232)
161 PRK10938 putative molybdenum t 99.9 9.8E-24 2.1E-28 197.5 9.9 151 3-162 30-213 (490)
162 PRK14247 phosphate ABC transpo 99.9 1.4E-23 3E-28 180.3 9.9 151 3-161 30-222 (250)
163 COG1123 ATPase components of v 99.9 8.2E-24 1.8E-28 196.3 9.1 159 3-169 318-515 (539)
164 PRK11701 phnK phosphonate C-P 99.9 7.5E-24 1.6E-28 182.9 8.2 147 3-157 33-225 (258)
165 cd03214 ABC_Iron-Siderophores_ 99.9 6.2E-24 1.3E-28 174.1 7.3 140 3-156 26-170 (180)
166 COG1129 MglA ABC-type sugar tr 99.9 1.9E-23 4.1E-28 192.6 11.3 156 3-167 35-228 (500)
167 PRK15056 manganese/iron transp 99.9 8E-24 1.7E-28 184.2 8.0 145 3-156 34-214 (272)
168 cd03299 ABC_ModC_like Archeal 99.9 1.6E-23 3.6E-28 178.5 9.8 145 3-156 26-202 (235)
169 TIGR00968 3a0106s01 sulfate AB 99.9 1.8E-23 3.9E-28 178.4 10.0 146 3-157 27-204 (237)
170 TIGR02323 CP_lyasePhnK phospho 99.9 1.2E-23 2.7E-28 180.8 8.9 146 3-156 30-221 (253)
171 PRK11022 dppD dipeptide transp 99.9 1.5E-23 3.2E-28 187.1 9.6 158 3-168 34-238 (326)
172 PRK10982 galactose/methyl gala 99.9 2.8E-23 6E-28 194.6 11.7 151 3-162 25-212 (491)
173 cd03246 ABCC_Protease_Secretio 99.9 1.3E-23 2.9E-28 171.1 8.3 124 4-153 30-164 (173)
174 PRK13648 cbiO cobalt transport 99.9 1.6E-23 3.4E-28 182.0 9.1 149 3-161 36-219 (269)
175 cd03234 ABCG_White The White s 99.9 2.9E-23 6.4E-28 175.8 10.5 145 3-156 34-216 (226)
176 PRK14242 phosphate transporter 99.9 1.2E-23 2.7E-28 180.9 8.2 147 3-157 33-221 (253)
177 PRK13632 cbiO cobalt transport 99.9 9.8E-24 2.1E-28 183.6 7.6 149 3-161 36-219 (271)
178 COG4175 ProV ABC-type proline/ 99.9 1.5E-23 3.3E-28 181.8 8.5 151 3-162 55-243 (386)
179 PRK10418 nikD nickel transport 99.9 2.6E-23 5.6E-28 179.2 9.9 147 3-156 30-213 (254)
180 PRK13640 cbiO cobalt transport 99.9 1.1E-23 2.4E-28 184.3 7.7 159 3-171 34-230 (282)
181 COG4586 ABC-type uncharacteriz 99.9 1.6E-23 3.5E-28 178.4 8.3 157 3-168 51-241 (325)
182 TIGR02324 CP_lyasePhnL phospho 99.9 8.7E-23 1.9E-27 172.5 12.8 144 3-154 35-219 (224)
183 PRK09473 oppD oligopeptide tra 99.9 1.4E-23 3E-28 187.6 8.3 157 3-167 43-245 (330)
184 PRK13549 xylose transporter AT 99.9 2.3E-23 4.9E-28 195.9 10.1 150 3-161 289-482 (506)
185 PRK14273 phosphate ABC transpo 99.9 1.3E-23 2.7E-28 181.0 7.6 146 4-157 35-222 (254)
186 PRK11288 araG L-arabinose tran 99.9 2.6E-23 5.7E-28 195.2 10.4 145 3-156 280-468 (501)
187 cd03213 ABCG_EPDR ABCG transpo 99.9 5E-23 1.1E-27 170.8 10.9 132 3-156 36-184 (194)
188 PRK15093 antimicrobial peptide 99.9 2.3E-23 5.1E-28 186.1 9.4 158 3-168 34-243 (330)
189 PRK10762 D-ribose transporter 99.9 3.2E-23 7E-28 194.6 10.8 149 3-160 279-471 (501)
190 PRK10261 glutathione transport 99.9 1.9E-23 4.1E-28 200.8 9.4 155 3-165 351-545 (623)
191 COG3845 ABC-type uncharacteriz 99.9 8.7E-23 1.9E-27 185.7 13.1 151 3-161 31-217 (501)
192 PRK15439 autoinducer 2 ABC tra 99.9 3.4E-23 7.4E-28 194.9 10.7 149 3-160 290-479 (510)
193 PRK10419 nikE nickel transport 99.9 4E-23 8.7E-28 179.5 10.2 152 3-163 39-231 (268)
194 PRK13547 hmuV hemin importer A 99.9 3.3E-23 7.2E-28 180.5 9.3 151 3-162 28-233 (272)
195 PRK13545 tagH teichoic acids e 99.9 2E-23 4.3E-28 194.4 8.3 155 3-166 51-225 (549)
196 COG4148 ModC ABC-type molybdat 99.9 8.5E-24 1.9E-28 180.7 5.4 166 4-178 26-223 (352)
197 PRK11288 araG L-arabinose tran 99.9 5.9E-23 1.3E-27 192.8 11.6 151 3-162 31-218 (501)
198 TIGR02982 heterocyst_DevA ABC 99.9 1.8E-22 3.8E-27 170.4 13.4 142 3-154 32-211 (220)
199 cd03251 ABCC_MsbA MsbA is an e 99.9 1.9E-23 4E-28 177.6 7.5 141 4-155 30-207 (234)
200 PRK10247 putative ABC transpor 99.9 1.6E-22 3.4E-27 171.4 12.9 137 3-147 34-201 (225)
201 PRK14267 phosphate ABC transpo 99.9 4.7E-23 1E-27 177.2 9.8 151 3-161 31-225 (253)
202 PRK09544 znuC high-affinity zi 99.9 7.6E-23 1.7E-27 176.3 10.9 146 3-157 31-194 (251)
203 PRK09984 phosphonate/organopho 99.9 4.7E-23 1E-27 178.3 9.6 149 3-160 31-229 (262)
204 PRK10261 glutathione transport 99.9 3.3E-23 7.2E-28 199.2 9.5 163 3-172 43-257 (623)
205 cd03233 ABC_PDR_domain1 The pl 99.9 7.1E-23 1.5E-27 170.9 10.2 141 3-158 34-194 (202)
206 PRK14268 phosphate ABC transpo 99.9 7.7E-23 1.7E-27 176.6 10.7 146 3-156 39-225 (258)
207 cd03252 ABCC_Hemolysin The ABC 99.9 2.8E-23 6E-28 176.9 7.7 136 4-147 30-200 (237)
208 cd03216 ABC_Carb_Monos_I This 99.9 3.9E-23 8.4E-28 167.0 8.0 124 3-155 27-153 (163)
209 PRK14241 phosphate transporter 99.9 6.3E-23 1.4E-27 177.1 9.8 145 3-155 31-218 (258)
210 PRK13642 cbiO cobalt transport 99.9 3.9E-23 8.4E-28 180.4 8.3 149 4-162 35-218 (277)
211 TIGR02633 xylG D-xylose ABC tr 99.9 5.8E-23 1.3E-27 192.8 10.1 148 3-159 287-478 (500)
212 PRK10744 pstB phosphate transp 99.9 3.1E-23 6.7E-28 179.3 7.5 146 3-156 40-227 (260)
213 PRK15134 microcin C ABC transp 99.9 3.6E-23 7.9E-28 195.4 8.6 153 4-163 37-236 (529)
214 PRK14251 phosphate ABC transpo 99.9 5.6E-23 1.2E-27 176.6 8.9 148 4-159 32-221 (251)
215 PRK03695 vitamin B12-transport 99.9 6.1E-23 1.3E-27 176.4 9.1 150 3-160 23-209 (248)
216 CHL00131 ycf16 sulfate ABC tra 99.9 9.9E-23 2.1E-27 175.0 10.2 140 3-150 34-217 (252)
217 PRK14274 phosphate ABC transpo 99.9 4.3E-23 9.3E-28 178.2 7.9 149 4-160 40-230 (259)
218 cd03245 ABCC_bacteriocin_expor 99.9 4.7E-23 1E-27 173.6 7.9 143 4-155 32-209 (220)
219 PRK14245 phosphate ABC transpo 99.9 5.5E-23 1.2E-27 176.6 8.4 148 3-158 30-219 (250)
220 TIGR02633 xylG D-xylose ABC tr 99.9 1.7E-22 3.6E-27 189.7 12.2 152 3-162 28-219 (500)
221 PRK14235 phosphate transporter 99.9 5.5E-23 1.2E-27 178.5 8.3 146 3-156 46-234 (267)
222 cd03232 ABC_PDR_domain2 The pl 99.9 1.9E-22 4E-27 167.0 11.0 131 3-155 34-180 (192)
223 COG1134 TagH ABC-type polysacc 99.9 5.4E-23 1.2E-27 173.1 7.8 157 4-167 55-230 (249)
224 cd03222 ABC_RNaseL_inhibitor T 99.9 1.6E-22 3.4E-27 165.7 10.3 112 3-154 26-142 (177)
225 cd03254 ABCC_Glucan_exporter_l 99.9 4.7E-23 1E-27 174.6 7.4 136 4-147 31-201 (229)
226 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.9 3.5E-23 7.5E-28 176.5 6.6 143 3-154 30-207 (238)
227 PRK14256 phosphate ABC transpo 99.9 9E-23 1.9E-27 175.5 9.2 149 4-160 32-223 (252)
228 TIGR03269 met_CoM_red_A2 methy 99.9 8.7E-23 1.9E-27 192.5 9.9 150 4-160 312-504 (520)
229 PRK14270 phosphate ABC transpo 99.9 1E-22 2.2E-27 175.1 9.1 150 3-160 31-222 (251)
230 PRK14269 phosphate ABC transpo 99.9 9.4E-23 2E-27 174.9 8.8 146 3-156 29-213 (246)
231 PRK15134 microcin C ABC transp 99.9 5.4E-23 1.2E-27 194.3 7.6 149 3-161 313-503 (529)
232 cd03228 ABCC_MRP_Like The MRP 99.9 1.3E-22 2.9E-27 164.9 8.9 121 3-149 29-160 (171)
233 COG4525 TauB ABC-type taurine 99.9 3.1E-22 6.7E-27 163.5 10.9 136 4-147 33-196 (259)
234 cd03217 ABC_FeS_Assembly ABC-t 99.9 1.2E-22 2.5E-27 169.3 8.3 134 4-155 28-176 (200)
235 PRK14239 phosphate transporter 99.9 8.9E-23 1.9E-27 175.3 7.6 147 3-157 32-220 (252)
236 COG1101 PhnK ABC-type uncharac 99.9 1.9E-22 4E-27 166.9 9.1 158 4-166 34-231 (263)
237 TIGR01257 rim_protein retinal- 99.9 1.1E-22 2.4E-27 212.4 9.5 155 3-166 1966-2152(2272)
238 PRK09580 sufC cysteine desulfu 99.9 1.4E-22 3E-27 173.7 8.5 141 3-150 28-211 (248)
239 PRK14259 phosphate ABC transpo 99.9 4E-22 8.6E-27 173.4 11.5 146 3-156 40-225 (269)
240 PRK14263 phosphate ABC transpo 99.9 1.4E-22 3E-27 175.5 8.5 146 3-156 35-220 (261)
241 PRK10982 galactose/methyl gala 99.9 2.1E-22 4.4E-27 188.7 10.3 147 3-157 275-464 (491)
242 PRK14237 phosphate transporter 99.9 1.9E-22 4.1E-27 175.1 9.1 146 4-157 48-235 (267)
243 PRK14262 phosphate ABC transpo 99.9 3.3E-22 7.1E-27 171.7 10.5 147 3-157 30-218 (250)
244 cd03253 ABCC_ATM1_transporter 99.9 2.2E-22 4.7E-27 171.2 9.3 137 3-147 28-199 (236)
245 PRK14248 phosphate ABC transpo 99.9 2.1E-22 4.5E-27 174.9 9.1 146 3-156 48-235 (268)
246 PRK14249 phosphate ABC transpo 99.9 2.2E-22 4.8E-27 172.9 9.0 148 3-158 31-220 (251)
247 PRK14244 phosphate ABC transpo 99.9 2.7E-22 5.9E-27 172.4 9.5 148 3-158 32-222 (251)
248 cd03236 ABC_RNaseL_inhibitor_d 99.9 8.2E-22 1.8E-26 170.3 12.5 144 4-156 28-211 (255)
249 PRK15177 Vi polysaccharide exp 99.9 4.3E-22 9.4E-27 167.5 10.5 142 3-154 14-173 (213)
250 cd03247 ABCC_cytochrome_bd The 99.9 9.7E-23 2.1E-27 166.6 6.2 122 3-147 29-160 (178)
251 cd03248 ABCC_TAP TAP, the Tran 99.9 2.3E-22 5E-27 170.1 8.6 135 3-147 41-212 (226)
252 PRK14258 phosphate ABC transpo 99.9 3.2E-22 7E-27 173.1 9.7 150 3-159 34-226 (261)
253 TIGR03269 met_CoM_red_A2 methy 99.9 1.9E-22 4.2E-27 190.1 9.0 148 3-159 27-244 (520)
254 PRK14238 phosphate transporter 99.9 1.4E-22 2.9E-27 176.5 7.3 147 3-157 51-239 (271)
255 COG4608 AppF ABC-type oligopep 99.9 2.1E-22 4.7E-27 172.2 8.3 145 3-163 40-189 (268)
256 COG2274 SunT ABC-type bacterio 99.9 1.6E-22 3.4E-27 195.4 8.4 152 4-170 501-693 (709)
257 PRK14240 phosphate transporter 99.9 4.1E-22 9E-27 171.1 9.6 146 4-157 31-218 (250)
258 cd03290 ABCC_SUR1_N The SUR do 99.9 3.7E-22 8.1E-27 168.1 9.1 138 4-147 29-205 (218)
259 cd03369 ABCC_NFT1 Domain 2 of 99.9 4.8E-22 1E-26 166.1 9.6 131 3-147 35-187 (207)
260 COG4181 Predicted ABC-type tra 99.9 7.1E-22 1.5E-26 158.4 10.0 129 4-137 38-204 (228)
261 PRK14275 phosphate ABC transpo 99.9 4.3E-22 9.3E-27 174.7 9.5 148 3-158 66-255 (286)
262 PRK14272 phosphate ABC transpo 99.9 6.9E-22 1.5E-26 169.8 10.6 148 4-159 32-222 (252)
263 cd03244 ABCC_MRP_domain2 Domai 99.9 2.5E-22 5.5E-27 169.2 7.7 136 4-147 32-201 (221)
264 PRK14253 phosphate ABC transpo 99.9 7.5E-22 1.6E-26 169.4 10.3 149 3-159 30-219 (249)
265 COG1119 ModF ABC-type molybden 99.9 1.2E-21 2.5E-26 165.1 11.1 144 5-157 60-246 (257)
266 PRK14236 phosphate transporter 99.9 7.7E-22 1.7E-26 171.8 10.4 150 3-160 52-243 (272)
267 PRK14254 phosphate ABC transpo 99.9 5.6E-22 1.2E-26 173.8 9.5 143 3-153 66-248 (285)
268 PRK14243 phosphate transporter 99.9 3.1E-22 6.6E-27 173.6 7.5 146 3-156 37-222 (264)
269 PLN03211 ABC transporter G-25; 99.9 1E-21 2.3E-26 189.6 11.9 159 3-168 95-291 (659)
270 TIGR01257 rim_protein retinal- 99.9 5.4E-22 1.2E-26 207.4 10.2 152 3-164 957-1140(2272)
271 COG0444 DppD ABC-type dipeptid 99.9 5.3E-22 1.1E-26 173.2 8.3 162 3-172 32-242 (316)
272 PRK14255 phosphate ABC transpo 99.9 5.8E-22 1.3E-26 170.4 8.4 146 4-157 33-220 (252)
273 PRK14260 phosphate ABC transpo 99.9 1E-21 2.2E-26 169.8 9.8 146 3-156 34-221 (259)
274 PRK11176 lipid transporter ATP 99.9 4.6E-22 1E-26 189.7 8.4 133 4-145 371-540 (582)
275 COG1123 ATPase components of v 99.9 6.2E-22 1.3E-26 183.9 8.7 163 3-173 36-244 (539)
276 PRK14246 phosphate ABC transpo 99.9 1.1E-21 2.3E-26 169.6 9.6 146 3-156 37-224 (257)
277 PRK14271 phosphate ABC transpo 99.9 1E-21 2.2E-26 171.4 9.5 150 3-160 48-238 (276)
278 PRK13409 putative ATPase RIL; 99.9 2.1E-21 4.6E-26 185.3 12.5 145 3-157 366-527 (590)
279 PRK14265 phosphate ABC transpo 99.9 5.8E-22 1.3E-26 172.8 7.9 146 3-156 47-232 (274)
280 PRK13409 putative ATPase RIL; 99.9 1.5E-21 3.3E-26 186.3 10.6 144 3-156 100-283 (590)
281 cd03250 ABCC_MRP_domain1 Domai 99.9 1.5E-21 3.3E-26 162.7 9.2 137 4-147 33-191 (204)
282 PRK14261 phosphate ABC transpo 99.9 2.2E-21 4.7E-26 167.0 10.3 147 3-157 33-221 (253)
283 PRK14257 phosphate ABC transpo 99.9 1.2E-21 2.6E-26 175.0 8.8 152 3-162 109-302 (329)
284 cd03223 ABCD_peroxisomal_ALDP 99.9 3.5E-21 7.7E-26 156.0 10.2 119 3-152 28-155 (166)
285 TIGR03797 NHPM_micro_ABC2 NHPM 99.9 8E-22 1.7E-26 191.5 7.6 133 4-146 481-647 (686)
286 COG4172 ABC-type uncharacteriz 99.8 1.4E-21 3E-26 174.3 8.1 155 4-167 315-510 (534)
287 PRK15064 ABC transporter ATP-b 99.8 2.4E-21 5.3E-26 183.1 10.2 148 3-161 28-229 (530)
288 PRK14266 phosphate ABC transpo 99.8 2.6E-21 5.7E-26 166.1 9.5 144 3-154 30-215 (250)
289 cd03289 ABCC_CFTR2 The CFTR su 99.8 1.2E-21 2.7E-26 170.9 7.3 155 4-168 32-220 (275)
290 TIGR03796 NHPM_micro_ABC1 NHPM 99.8 7.2E-22 1.6E-26 192.5 6.4 147 4-161 507-688 (710)
291 PRK14252 phosphate ABC transpo 99.8 2.4E-21 5.2E-26 167.9 9.0 147 3-157 43-233 (265)
292 PRK10790 putative multidrug tr 99.8 8.1E-22 1.8E-26 188.5 6.6 134 4-145 369-536 (592)
293 PRK11174 cysteine/glutathione 99.8 2.5E-21 5.5E-26 184.9 9.9 133 4-145 378-545 (588)
294 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.8 2.5E-21 5.4E-26 153.4 7.8 108 3-154 27-137 (144)
295 PRK14264 phosphate ABC transpo 99.8 4.1E-21 8.9E-26 169.9 9.8 142 4-153 73-268 (305)
296 PRK10938 putative molybdenum t 99.8 4.4E-21 9.4E-26 179.7 10.5 145 3-156 287-475 (490)
297 TIGR01842 type_I_sec_PrtD type 99.8 3.6E-21 7.8E-26 182.4 10.0 133 4-145 346-515 (544)
298 TIGR03375 type_I_sec_LssB type 99.8 1.7E-21 3.6E-26 189.5 7.8 144 4-156 493-671 (694)
299 PRK11160 cysteine/glutathione 99.8 2.8E-21 6E-26 184.3 8.8 135 4-146 368-536 (574)
300 TIGR02868 CydC thiol reductant 99.8 7.5E-21 1.6E-25 179.5 11.6 129 4-137 363-526 (529)
301 COG4133 CcmA ABC-type transpor 99.8 4.9E-20 1.1E-24 149.6 14.3 128 4-136 30-186 (209)
302 cd03238 ABC_UvrA The excision 99.8 7.1E-21 1.5E-25 155.7 9.6 128 3-153 22-157 (176)
303 cd03288 ABCC_SUR2 The SUR doma 99.8 3.3E-21 7.1E-26 166.4 7.8 136 3-148 48-219 (257)
304 cd00267 ABC_ATPase ABC (ATP-bi 99.8 1.2E-20 2.7E-25 151.0 10.4 121 3-153 26-149 (157)
305 PRK15064 ABC transporter ATP-b 99.8 3.6E-21 7.7E-26 181.9 8.5 142 3-156 346-507 (530)
306 COG1132 MdlB ABC-type multidru 99.8 3.7E-21 8.1E-26 183.1 8.5 136 4-149 357-529 (567)
307 TIGR01193 bacteriocin_ABC ABC- 99.8 1.7E-21 3.8E-26 189.8 6.3 133 4-145 502-670 (708)
308 COG4988 CydD ABC-type transpor 99.8 5.2E-21 1.1E-25 177.4 8.4 154 4-181 349-536 (559)
309 TIGR00955 3a01204 The Eye Pigm 99.8 1.3E-20 2.7E-25 181.2 11.1 161 4-171 53-254 (617)
310 TIGR01846 type_I_sec_HlyB type 99.8 9E-21 2E-25 184.4 8.9 144 4-156 485-663 (694)
311 cd03291 ABCC_CFTR1 The CFTR su 99.8 1.6E-20 3.6E-25 164.3 9.2 149 4-161 65-235 (282)
312 COG0488 Uup ATPase components 99.8 4.6E-20 1E-24 173.2 12.7 135 3-147 30-216 (530)
313 TIGR01192 chvA glucan exporter 99.8 1.2E-20 2.6E-25 180.3 8.5 136 4-147 363-533 (585)
314 PRK10636 putative ABC transpor 99.8 2.1E-20 4.6E-25 180.2 10.2 148 3-161 339-504 (638)
315 PRK10535 macrolide transporter 99.8 3.2E-20 7E-25 179.2 11.2 160 3-172 35-231 (648)
316 PRK11819 putative ABC transpor 99.8 6.7E-20 1.5E-24 174.2 13.2 143 3-158 34-234 (556)
317 TIGR03719 ABC_ABC_ChvD ATP-bin 99.8 5.8E-20 1.3E-24 174.5 12.5 140 3-155 349-511 (552)
318 COG4618 ArpD ABC-type protease 99.8 3.8E-20 8.2E-25 169.0 10.6 159 3-175 363-562 (580)
319 TIGR02203 MsbA_lipidA lipid A 99.8 1.9E-20 4.1E-25 178.1 9.0 130 4-137 360-525 (571)
320 PRK10789 putative multidrug tr 99.8 1.3E-20 2.9E-25 179.5 7.9 134 4-145 343-511 (569)
321 PRK11147 ABC transporter ATPas 99.8 6.3E-20 1.4E-24 176.9 12.3 142 4-157 347-510 (635)
322 TIGR01194 cyc_pep_trnsptr cycl 99.8 3.3E-20 7.1E-25 176.3 10.1 135 4-145 370-532 (555)
323 PRK13657 cyclic beta-1,2-gluca 99.8 2.1E-20 4.6E-25 178.6 8.8 143 4-156 363-541 (588)
324 COG4161 ArtP ABC-type arginine 99.8 9E-20 1.9E-24 145.2 10.7 146 4-158 30-215 (242)
325 TIGR02857 CydD thiol reductant 99.8 9.9E-20 2.1E-24 171.9 13.1 134 4-145 350-518 (529)
326 PRK11819 putative ABC transpor 99.8 6.7E-20 1.4E-24 174.3 11.9 141 3-155 351-513 (556)
327 TIGR00958 3a01208 Conjugate Tr 99.8 1.3E-20 2.8E-25 183.8 7.2 132 4-145 509-675 (711)
328 TIGR03719 ABC_ABC_ChvD ATP-bin 99.8 1.1E-19 2.4E-24 172.6 13.0 142 3-157 32-231 (552)
329 TIGR02204 MsbA_rel ABC transpo 99.8 2.6E-20 5.7E-25 177.4 8.5 134 4-145 368-536 (576)
330 PRK10522 multidrug transporter 99.8 5.8E-20 1.2E-24 174.3 10.0 135 3-144 350-510 (547)
331 COG4167 SapF ABC-type antimicr 99.8 9.2E-20 2E-24 147.8 9.7 155 4-181 41-232 (267)
332 PRK10636 putative ABC transpor 99.8 7.2E-20 1.6E-24 176.5 10.4 145 3-158 28-220 (638)
333 KOG0059 Lipid exporter ABCA1 a 99.8 1.2E-19 2.5E-24 180.4 11.9 153 3-164 592-778 (885)
334 PLN03232 ABC transporter C fam 99.8 4.4E-20 9.6E-25 191.8 8.5 149 4-161 1264-1446(1495)
335 KOG0055 Multidrug/pheromone ex 99.8 3.2E-20 7E-25 184.1 7.0 146 3-163 380-566 (1228)
336 PRK11147 ABC transporter ATPas 99.8 1.2E-19 2.6E-24 175.0 10.6 141 4-158 31-227 (635)
337 PLN03140 ABC transporter G fam 99.8 1.5E-19 3.2E-24 186.7 11.2 158 3-167 907-1104(1470)
338 TIGR00956 3a01205 Pleiotropic 99.8 1.7E-19 3.7E-24 186.1 11.4 158 3-167 790-987 (1394)
339 KOG0061 Transporter, ABC super 99.8 4.2E-19 9E-24 170.1 12.4 160 3-168 57-255 (613)
340 KOG0057 Mitochondrial Fe/S clu 99.8 6.5E-20 1.4E-24 168.7 6.5 126 4-136 380-542 (591)
341 COG4987 CydC ABC-type transpor 99.8 1.4E-19 2.9E-24 166.4 8.5 138 4-149 366-538 (573)
342 PLN03130 ABC transporter C fam 99.8 1.1E-19 2.5E-24 189.4 8.3 161 4-173 1267-1461(1622)
343 COG4619 ABC-type uncharacteriz 99.8 1.7E-18 3.7E-23 138.6 12.8 130 4-137 31-191 (223)
344 PLN03073 ABC transporter F fam 99.8 1.6E-19 3.5E-24 175.6 7.9 137 4-155 537-695 (718)
345 TIGR00957 MRP_assoc_pro multi 99.8 2.2E-19 4.9E-24 186.8 8.7 137 4-148 1314-1484(1522)
346 COG4674 Uncharacterized ABC-ty 99.8 1.6E-19 3.5E-24 147.6 5.9 158 4-185 33-231 (249)
347 PTZ00265 multidrug resistance 99.8 1.2E-18 2.7E-23 180.3 13.2 135 4-145 1196-1420(1466)
348 PTZ00243 ABC transporter; Prov 99.8 3.7E-19 8E-24 185.2 8.9 136 4-147 1338-1508(1560)
349 PF00005 ABC_tran: ABC transpo 99.8 4.7E-19 1E-23 138.1 7.3 105 3-109 12-137 (137)
350 PTZ00265 multidrug resistance 99.8 7.7E-19 1.7E-23 181.8 10.8 150 3-160 412-655 (1466)
351 KOG0058 Peptide exporter, ABC 99.8 5.2E-19 1.1E-23 167.3 8.1 149 3-181 495-684 (716)
352 TIGR00956 3a01205 Pleiotropic 99.8 7.5E-19 1.6E-23 181.4 10.0 159 3-168 88-295 (1394)
353 COG0396 sufC Cysteine desulfur 99.8 4.7E-18 1E-22 142.0 12.4 132 3-137 31-201 (251)
354 PLN03140 ABC transporter G fam 99.8 8.5E-19 1.9E-23 181.1 9.0 162 3-171 192-425 (1470)
355 TIGR00954 3a01203 Peroxysomal 99.8 2.5E-18 5.4E-23 166.4 11.7 138 4-153 480-647 (659)
356 COG4615 PvdE ABC-type sideroph 99.7 9E-18 2E-22 149.7 11.8 155 3-165 350-529 (546)
357 TIGR01271 CFTR_protein cystic 99.7 1.5E-18 3.3E-23 180.2 6.8 151 4-164 1247-1431(1490)
358 COG0488 Uup ATPase components 99.7 1.2E-17 2.5E-22 157.1 12.0 134 4-145 350-500 (530)
359 TIGR01271 CFTR_protein cystic 99.7 4.8E-18 1E-22 176.6 8.5 153 4-164 454-627 (1490)
360 cd03278 ABC_SMC_barmotin Barmo 99.7 9.6E-18 2.1E-22 139.6 8.0 131 4-145 24-177 (197)
361 COG4136 ABC-type uncharacteriz 99.7 6.3E-17 1.4E-21 127.6 11.4 131 3-137 29-192 (213)
362 PLN03073 ABC transporter F fam 99.7 3.5E-17 7.5E-22 159.4 12.2 146 4-160 205-417 (718)
363 COG4778 PhnL ABC-type phosphon 99.7 1.8E-17 3.9E-22 133.1 7.8 131 3-137 38-209 (235)
364 COG4107 PhnK ABC-type phosphon 99.7 5.9E-17 1.3E-21 130.6 10.6 135 3-145 33-213 (258)
365 cd03272 ABC_SMC3_euk Eukaryoti 99.7 8.1E-17 1.8E-21 137.5 12.0 131 4-136 25-217 (243)
366 TIGR00957 MRP_assoc_pro multi 99.7 1.8E-17 4E-22 172.6 9.3 157 4-168 666-845 (1522)
367 cd03273 ABC_SMC2_euk Eukaryoti 99.7 2.7E-17 5.8E-22 141.6 8.5 132 4-137 27-226 (251)
368 cd03270 ABC_UvrA_I The excisio 99.7 4.3E-17 9.2E-22 138.4 9.5 87 60-155 118-209 (226)
369 KOG0055 Multidrug/pheromone ex 99.7 1.3E-17 2.7E-22 165.8 6.8 154 4-181 1018-1206(1228)
370 PLN03130 ABC transporter C fam 99.7 2.7E-17 5.8E-22 171.8 9.0 152 4-163 645-818 (1622)
371 PLN03232 ABC transporter C fam 99.7 5.9E-17 1.3E-21 168.6 9.2 157 4-168 645-823 (1495)
372 PTZ00243 ABC transporter; Prov 99.7 4.6E-17 9.9E-22 169.7 7.5 146 4-161 688-858 (1560)
373 cd03275 ABC_SMC1_euk Eukaryoti 99.7 2E-16 4.4E-21 135.9 7.7 133 4-137 24-216 (247)
374 COG4138 BtuD ABC-type cobalami 99.7 3.2E-16 6.9E-21 126.4 8.2 160 4-171 27-219 (248)
375 KOG0062 ATPase component of AB 99.6 3.8E-16 8.2E-21 143.0 8.8 131 5-149 109-263 (582)
376 cd03279 ABC_sbcCD SbcCD and ot 99.6 2.9E-16 6.4E-21 132.0 7.2 63 87-154 132-203 (213)
377 cd03240 ABC_Rad50 The catalyti 99.6 2.7E-15 5.8E-20 125.5 12.7 123 4-137 24-180 (204)
378 COG4172 ABC-type uncharacteriz 99.6 5E-16 1.1E-20 139.0 8.4 155 3-165 37-239 (534)
379 cd03271 ABC_UvrA_II The excisi 99.6 1.2E-15 2.6E-20 132.0 9.0 79 59-146 149-234 (261)
380 KOG0927 Predicted transporter 99.6 1.4E-15 3E-20 140.1 8.8 142 4-156 418-578 (614)
381 KOG0056 Heavy metal exporter H 99.6 3.9E-15 8.4E-20 136.0 10.1 130 3-136 565-730 (790)
382 KOG0054 Multidrug resistance-a 99.6 2.1E-15 4.5E-20 152.8 8.4 138 4-149 1168-1339(1381)
383 COG5265 ATM1 ABC-type transpor 99.6 9.4E-16 2E-20 137.7 5.1 133 4-146 291-460 (497)
384 COG1245 Predicted ATPase, RNas 99.6 6.4E-15 1.4E-19 133.5 10.0 131 3-141 368-516 (591)
385 KOG0065 Pleiotropic drug resis 99.6 1.5E-15 3.4E-20 151.4 5.4 161 3-168 818-1016(1391)
386 cd03274 ABC_SMC4_euk Eukaryoti 99.6 2.1E-15 4.6E-20 126.9 4.6 56 80-137 127-187 (212)
387 COG1129 MglA ABC-type sugar tr 99.5 1.7E-14 3.6E-19 133.6 9.6 155 3-165 286-482 (500)
388 COG1245 Predicted ATPase, RNas 99.5 1.3E-14 2.8E-19 131.5 8.0 126 3-136 101-269 (591)
389 cd03283 ABC_MutS-like MutS-lik 99.5 3.2E-14 6.9E-19 118.6 9.0 115 4-145 27-149 (199)
390 cd03276 ABC_SMC6_euk Eukaryoti 99.5 1.3E-13 2.8E-18 114.9 12.3 135 4-150 23-182 (198)
391 cd03280 ABC_MutS2 MutS2 homolo 99.5 1E-14 2.2E-19 121.5 5.5 119 4-154 30-160 (200)
392 KOG0054 Multidrug resistance-a 99.5 4.4E-14 9.6E-19 143.3 8.6 160 4-171 549-729 (1381)
393 COG4178 ABC-type uncharacteriz 99.5 2E-13 4.4E-18 128.8 10.5 128 5-136 422-570 (604)
394 KOG0066 eIF2-interacting prote 99.5 2E-13 4.3E-18 123.6 10.0 125 2-137 613-758 (807)
395 smart00534 MUTSac ATPase domai 99.4 2.3E-13 4.9E-18 112.1 6.4 125 4-151 1-128 (185)
396 KOG0927 Predicted transporter 99.4 1.8E-12 3.9E-17 119.7 11.4 144 5-158 104-293 (614)
397 cd03243 ABC_MutS_homologs The 99.4 8.5E-13 1.8E-17 110.0 8.0 113 4-136 31-147 (202)
398 KOG2355 Predicted ABC-type tra 99.4 8.9E-13 1.9E-17 109.1 7.6 156 5-167 43-231 (291)
399 COG4170 SapD ABC-type antimicr 99.4 3.9E-13 8.5E-18 111.6 5.0 151 3-160 34-235 (330)
400 cd03277 ABC_SMC5_euk Eukaryoti 99.4 6.3E-13 1.4E-17 112.0 5.6 42 92-136 144-188 (213)
401 KOG0062 ATPase component of AB 99.3 1.2E-12 2.6E-17 120.3 6.5 122 5-137 393-536 (582)
402 cd03227 ABC_Class2 ABC-type Cl 99.3 5.2E-12 1.1E-16 101.8 9.5 114 4-145 23-142 (162)
403 PRK00635 excinuclease ABC subu 99.3 1E-11 2.2E-16 129.3 13.0 87 61-157 791-884 (1809)
404 cd03239 ABC_SMC_head The struc 99.3 4.8E-12 1E-16 103.7 8.2 50 87-137 103-155 (178)
405 cd03281 ABC_MSH5_euk MutS5 hom 99.3 1.6E-11 3.4E-16 103.5 9.8 117 4-145 31-155 (213)
406 TIGR02858 spore_III_AA stage I 99.3 2.2E-11 4.7E-16 106.1 10.5 39 3-41 112-150 (270)
407 TIGR00630 uvra excinuclease AB 99.3 1.5E-11 3.2E-16 122.5 9.7 79 61-146 810-893 (924)
408 cd03282 ABC_MSH4_euk MutS4 hom 99.3 1.8E-11 4E-16 102.4 8.4 118 4-145 31-152 (204)
409 COG2401 ABC-type ATPase fused 99.3 3.8E-11 8.2E-16 108.3 10.7 132 3-137 410-565 (593)
410 PRK00349 uvrA excinuclease ABC 99.3 2.4E-11 5.2E-16 121.1 10.4 77 61-146 812-895 (943)
411 PTZ00132 GTP-binding nuclear p 99.2 4.9E-11 1.1E-15 99.9 8.6 39 87-128 161-205 (215)
412 cd03285 ABC_MSH2_euk MutS2 hom 99.2 4.4E-11 9.6E-16 101.4 8.3 122 4-154 32-162 (222)
413 cd03284 ABC_MutS1 MutS1 homolo 99.2 1.5E-10 3.4E-15 97.6 9.6 108 4-136 32-149 (216)
414 KOG0060 Long-chain acyl-CoA tr 99.2 2.1E-10 4.6E-15 106.9 11.0 127 4-136 463-623 (659)
415 KOG0066 eIF2-interacting prote 99.1 9.1E-11 2E-15 106.6 6.9 148 5-163 293-488 (807)
416 COG3845 ABC-type uncharacteriz 99.1 6E-10 1.3E-14 102.3 11.6 157 3-167 285-486 (501)
417 cd03287 ABC_MSH3_euk MutS3 hom 99.1 3.4E-10 7.3E-15 96.0 9.2 120 4-145 33-155 (222)
418 TIGR01069 mutS2 MutS2 family p 99.1 2.2E-10 4.7E-15 112.7 9.0 115 4-136 324-441 (771)
419 cd03241 ABC_RecN RecN ATPase i 99.0 4.9E-10 1.1E-14 97.9 6.9 55 81-137 171-230 (276)
420 PF02463 SMC_N: RecF/RecN/SMC 99.0 3.3E-09 7.1E-14 89.2 10.8 68 59-136 123-195 (220)
421 COG3910 Predicted ATPase [Gene 99.0 7.3E-09 1.6E-13 84.8 11.3 123 4-137 39-185 (233)
422 KOG0064 Peroxisomal long-chain 99.0 1.6E-09 3.5E-14 100.3 8.0 123 5-137 511-666 (728)
423 PRK08533 flagellar accessory p 99.0 8.7E-09 1.9E-13 87.8 11.9 38 98-136 117-159 (230)
424 cd01120 RecA-like_NTPases RecA 99.0 5.7E-09 1.2E-13 82.2 9.7 120 4-137 1-134 (165)
425 KOG0065 Pleiotropic drug resis 98.9 1E-09 2.2E-14 110.5 5.5 162 4-171 143-349 (1391)
426 KOG0063 RNAse L inhibitor, ABC 98.9 4.6E-09 1E-13 95.3 7.8 128 4-136 369-513 (592)
427 PRK13695 putative NTPase; Prov 98.9 2.7E-09 6E-14 86.7 5.5 135 4-154 2-145 (174)
428 cd01131 PilT Pilus retraction 98.9 2.7E-08 5.8E-13 82.8 11.6 102 4-136 3-105 (198)
429 TIGR02788 VirB11 P-type DNA tr 98.9 2.4E-08 5.3E-13 88.6 11.3 123 3-159 145-267 (308)
430 PRK00635 excinuclease ABC subu 98.8 4.4E-08 9.6E-13 102.7 13.4 74 61-137 1681-1759(1809)
431 PRK00409 recombination and DNA 98.8 1.7E-08 3.6E-13 99.7 9.7 112 4-136 329-446 (782)
432 COG0178 UvrA Excinuclease ATPa 98.8 6.4E-08 1.4E-12 93.7 12.8 50 85-137 829-882 (935)
433 cd01124 KaiC KaiC is a circadi 98.8 7.5E-08 1.6E-12 78.4 10.8 39 98-137 95-137 (187)
434 cd03286 ABC_MSH6_euk MutS6 hom 98.8 4.8E-08 1E-12 82.6 9.6 119 4-145 32-154 (218)
435 PRK10416 signal recognition pa 98.8 3E-07 6.5E-12 82.0 14.8 38 3-40 115-152 (318)
436 cd03242 ABC_RecF RecF is a rec 98.7 7.4E-08 1.6E-12 83.9 10.3 47 79-126 182-238 (270)
437 PRK07721 fliI flagellum-specif 98.7 7.1E-08 1.5E-12 89.3 9.6 154 4-166 160-336 (438)
438 COG1100 GTPase SAR1 and relate 98.7 6.4E-09 1.4E-13 86.8 1.4 122 3-126 6-137 (219)
439 PRK06067 flagellar accessory p 98.6 3.9E-07 8.6E-12 77.4 11.5 35 3-38 26-61 (234)
440 TIGR01420 pilT_fam pilus retra 98.6 4.1E-07 8.8E-12 82.0 11.8 102 4-136 124-226 (343)
441 smart00382 AAA ATPases associa 98.6 4.1E-07 8.9E-12 68.8 10.0 33 3-35 3-35 (148)
442 TIGR00554 panK_bact pantothena 98.6 4.1E-08 8.8E-13 86.3 4.2 39 2-40 62-102 (290)
443 PF13304 AAA_21: AAA domain; P 98.6 1.4E-07 3.1E-12 78.3 7.1 53 88-142 246-300 (303)
444 cd01128 rho_factor Transcripti 98.5 5E-07 1.1E-11 77.9 8.8 64 87-177 146-211 (249)
445 PRK09270 nucleoside triphospha 98.5 9.2E-08 2E-12 81.3 4.0 38 2-39 33-71 (229)
446 cd03115 SRP The signal recogni 98.5 3E-06 6.5E-11 68.5 12.7 38 3-40 1-38 (173)
447 cd01130 VirB11-like_ATPase Typ 98.5 1.3E-07 2.7E-12 77.9 4.6 35 3-37 26-60 (186)
448 PRK14974 cell division protein 98.5 6E-06 1.3E-10 74.2 15.4 154 3-182 141-296 (336)
449 cd04163 Era Era subfamily. Er 98.4 1E-05 2.2E-10 63.3 13.7 23 3-25 4-26 (168)
450 cd00820 PEPCK_HprK Phosphoenol 98.4 2.5E-07 5.3E-12 69.6 4.2 32 3-40 16-47 (107)
451 KOG0063 RNAse L inhibitor, ABC 98.4 4.3E-07 9.4E-12 82.7 6.4 127 4-136 102-269 (592)
452 cd01881 Obg_like The Obg-like 98.4 1.8E-06 4E-11 68.9 9.4 19 7-25 1-19 (176)
453 cd01125 repA Hexameric Replica 98.4 6.8E-06 1.5E-10 70.1 13.0 38 98-137 111-156 (239)
454 cd02025 PanK Pantothenate kina 98.4 2.1E-07 4.4E-12 78.8 3.5 36 4-39 1-38 (220)
455 TIGR00064 ftsY signal recognit 98.4 1E-05 2.3E-10 70.6 14.2 155 3-182 73-234 (272)
456 PRK13898 type IV secretion sys 98.4 4.7E-06 1E-10 82.9 13.5 62 98-164 642-707 (800)
457 PRK00089 era GTPase Era; Revie 98.4 1E-05 2.2E-10 70.9 14.2 22 4-25 7-28 (292)
458 cd03112 CobW_like The function 98.4 2.1E-06 4.6E-11 68.9 9.0 24 4-27 2-25 (158)
459 TIGR03238 dnd_assoc_3 dnd syst 98.4 3E-07 6.6E-12 85.3 4.4 37 3-41 33-70 (504)
460 cd00009 AAA The AAA+ (ATPases 98.4 1.7E-06 3.7E-11 66.1 7.9 33 4-36 21-53 (151)
461 PRK14723 flhF flagellar biosyn 98.4 8.6E-06 1.9E-10 79.8 14.2 91 3-113 186-280 (767)
462 PRK14722 flhF flagellar biosyn 98.3 7.1E-06 1.5E-10 74.6 12.2 92 3-114 138-233 (374)
463 TIGR03015 pepcterm_ATPase puta 98.3 1.5E-05 3.2E-10 68.7 13.4 97 4-117 45-142 (269)
464 smart00053 DYNc Dynamin, GTPas 98.3 2.2E-05 4.8E-10 67.3 14.3 31 4-34 28-60 (240)
465 cd02023 UMPK Uridine monophosp 98.3 5.4E-07 1.2E-11 74.6 4.0 35 4-40 1-35 (198)
466 PRK06995 flhF flagellar biosyn 98.3 1.2E-05 2.7E-10 75.2 13.5 38 3-40 257-296 (484)
467 COG1618 Predicted nucleotide k 98.3 1.6E-06 3.4E-11 69.5 6.4 122 1-136 4-136 (179)
468 PF02421 FeoB_N: Ferrous iron 98.3 5.3E-06 1.1E-10 66.6 9.5 118 4-181 2-121 (156)
469 PRK11889 flhF flagellar biosyn 98.3 2.1E-05 4.7E-10 71.8 14.4 38 3-40 242-279 (436)
470 PRK00349 uvrA excinuclease ABC 98.3 6.2E-07 1.4E-11 90.0 4.8 87 61-157 471-563 (943)
471 PRK05703 flhF flagellar biosyn 98.3 1.5E-05 3.3E-10 73.8 13.6 148 3-182 222-374 (424)
472 cd01898 Obg Obg subfamily. Th 98.3 5.7E-06 1.2E-10 65.8 9.4 21 5-25 3-23 (170)
473 PF00448 SRP54: SRP54-type pro 98.3 7E-06 1.5E-10 68.3 10.2 156 2-183 1-158 (196)
474 cd00880 Era_like Era (E. coli 98.3 4.6E-06 1E-10 64.2 8.6 77 98-181 44-120 (163)
475 TIGR00235 udk uridine kinase. 98.3 6.2E-07 1.3E-11 74.9 3.7 35 3-39 7-41 (207)
476 PRK06793 fliI flagellum-specif 98.3 2.3E-06 4.9E-11 79.1 7.6 98 4-113 158-262 (432)
477 TIGR00630 uvra excinuclease AB 98.3 6.7E-07 1.5E-11 89.6 4.4 87 61-157 469-561 (924)
478 PRK12723 flagellar biosynthesi 98.3 2.5E-05 5.5E-10 71.4 14.0 150 3-184 175-331 (388)
479 TIGR01425 SRP54_euk signal rec 98.2 5.8E-05 1.3E-09 69.8 16.1 38 3-40 101-138 (429)
480 PRK13891 conjugal transfer pro 98.2 5.3E-06 1.1E-10 83.1 9.7 70 88-164 679-752 (852)
481 PRK10078 ribose 1,5-bisphospho 98.2 1.6E-06 3.5E-11 71.2 4.9 35 1-38 1-35 (186)
482 PRK05480 uridine/cytidine kina 98.2 1.8E-06 4E-11 72.0 4.6 37 2-40 6-42 (209)
483 TIGR03499 FlhF flagellar biosy 98.2 7.7E-06 1.7E-10 71.8 8.6 38 3-40 195-234 (282)
484 PRK00454 engB GTP-binding prot 98.2 0.00018 4E-09 58.6 16.3 22 3-24 25-46 (196)
485 PRK14088 dnaA chromosomal repl 98.2 2.3E-05 4.9E-10 73.0 12.1 98 4-136 132-233 (440)
486 PRK09435 membrane ATPase/prote 98.2 6.4E-06 1.4E-10 73.8 8.1 41 2-42 56-96 (332)
487 PRK13830 conjugal transfer pro 98.2 8.1E-06 1.8E-10 81.4 9.5 52 90-148 646-699 (818)
488 PLN02796 D-glycerate 3-kinase 98.2 1.7E-06 3.8E-11 77.5 4.2 39 2-40 100-141 (347)
489 cd01852 AIG1 AIG1 (avrRpt2-ind 98.2 4.9E-05 1.1E-09 62.7 12.5 95 98-195 48-145 (196)
490 PF05049 IIGP: Interferon-indu 98.2 2.9E-06 6.2E-11 76.9 5.4 142 2-144 35-201 (376)
491 PF13555 AAA_29: P-loop contai 98.1 1.9E-06 4.2E-11 58.3 3.2 27 4-30 25-51 (62)
492 PRK05399 DNA mismatch repair p 98.1 1.2E-05 2.6E-10 80.4 10.1 111 4-136 609-726 (854)
493 PRK09866 hypothetical protein; 98.1 3.9E-05 8.4E-10 73.7 12.8 24 3-26 70-93 (741)
494 cd02026 PRK Phosphoribulokinas 98.1 2E-06 4.4E-11 75.1 4.0 32 4-35 1-32 (273)
495 cd04139 RalA_RalB RalA/RalB su 98.1 5.5E-06 1.2E-10 65.2 6.1 23 3-25 1-23 (164)
496 cd01878 HflX HflX subfamily. 98.1 2.6E-05 5.7E-10 64.4 10.4 23 3-25 42-64 (204)
497 PLN02318 phosphoribulokinase/u 98.1 3.9E-06 8.4E-11 79.9 5.9 38 2-40 65-102 (656)
498 PF13401 AAA_22: AAA domain; P 98.1 2.7E-06 5.8E-11 65.1 4.1 111 3-136 5-122 (131)
499 PF00488 MutS_V: MutS domain V 98.1 1.9E-05 4.2E-10 67.5 9.4 50 87-136 111-162 (235)
500 PRK06731 flhF flagellar biosyn 98.1 0.0001 2.2E-09 64.4 13.8 151 4-184 77-230 (270)
No 1
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=100.00 E-value=2.8e-57 Score=375.68 Aligned_cols=235 Identities=46% Similarity=0.837 Sum_probs=218.2
Q ss_pred CCeeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCCCCCCCCCCCChhhhhhHHHHHHHcCCCCCCchhhhHHh
Q 026486 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH 80 (238)
Q Consensus 1 ~~~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~ 80 (238)
|+|+++||||+||||||+|..+..++...++++.++|+||+++..+|++.++|++.++++++|+++++||||++.+|+++
T Consensus 1 m~fgqvVIGPPgSGKsTYc~g~~~fls~~gr~~~vVNLDPaNd~~~Y~~~v~I~elit~edvm~~~~LGPNg~l~yc~E~ 80 (290)
T KOG1533|consen 1 MPFGQVVIGPPGSGKSTYCNGMSQFLSAIGRPVAVVNLDPANDNLPYECAVDIRELITVEDVMEELGLGPNGALKYCMEY 80 (290)
T ss_pred CCcceEEEcCCCCCccchhhhHHHHHHHhCCceEEEecCCcccCCCCCCcccHHHHccHHHHHHHhCCCCchhHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHhccCCCCEEEEeCCCcccHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccchhHHHhhhHHHHHH
Q 026486 81 LEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSA 160 (238)
Q Consensus 81 ~~~~~s~~la~~l~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~ 160 (238)
+..+. .|+...+... ...|+++|+|+|++.++++..++++++++.+.+.+++.|+++|+|+|++|++|+|.+++++.+
T Consensus 81 l~~~i-dwl~~~l~~~-~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~t 158 (290)
T KOG1533|consen 81 LEANI-DWLLEKLKPL-TDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLAT 158 (290)
T ss_pred HHhhh-HHHHHHhhhc-cCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHH
Confidence 99999 9999888764 678999999999999999999989999999999999999999999999999999999999999
Q ss_pred HHhhcCCeeeeecccccccchhhh----hhhcc-cCHHHHHHHhhh-ccchhHHHHHHHHHHHHhhCCCceeEEeeccCC
Q 026486 161 MVQLELPHVNILSKMDLVTNKKEI----EDYLN-PESQFLLSELNQ-HMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKE 234 (238)
Q Consensus 161 ~~~~~~p~~~vlsk~dll~~~~~l----~~~~~-~~~~~l~~~l~~-~~~~~~~~l~~~i~~~i~~~~~~~~~~l~~~~~ 234 (238)
|+.++.|||||+||+|++++++.+ +.+.+ +|..+|...++. +...||+|||++||++|+||+||+|.||||+|+
T Consensus 159 Ml~melphVNvlSK~Dl~~~ygkl~f~ld~yt~v~Dl~yL~~~ld~dp~~~kYrkLne~ic~~IeD~~LVSF~~L~v~nk 238 (290)
T KOG1533|consen 159 MLHMELPHVNVLSKADLLKKYGKLPFNLDFYTEVQDLSYLEDLLDVDPRLRKYRKLNEAICELIEDFNLVSFEVLDVDNK 238 (290)
T ss_pred HHhhcccchhhhhHhHHHHhhcccccccchhhhhhhHHHHHHHhccChhhhHHHHHHHHHHHHHhccCceeeEEeeccCH
Confidence 999999999999999999987633 33333 466777766654 456799999999999999999999999999999
Q ss_pred CCC
Q 026486 235 SRY 237 (238)
Q Consensus 235 ~~~ 237 (238)
|||
T Consensus 239 eSm 241 (290)
T KOG1533|consen 239 ESM 241 (290)
T ss_pred HHH
Confidence 997
No 2
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=100.00 E-value=2.4e-55 Score=359.07 Aligned_cols=234 Identities=66% Similarity=1.195 Sum_probs=219.5
Q ss_pred CCeeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCCCCCCCCCCCChhhhhhHHHHHHHcCCCCCCchhhhHHh
Q 026486 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH 80 (238)
Q Consensus 1 ~~~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~ 80 (238)
|+|.+.|+||+||||||+|+.+..+.+..++++.++|+||+++.+.|+..+++|+.|+++++|+.+.+||||++++|+++
T Consensus 2 m~ya~lV~GpAgSGKSTyC~~~~~h~e~~gRs~~vVNLDPAae~f~y~~~iDiRdlIsvdDVmEdl~~GPNGgLv~cmEy 81 (273)
T KOG1534|consen 2 MRYAQLVMGPAGSGKSTYCSSMYEHCETVGRSVHVVNLDPAAEHFNYPVTIDIRDLISVDDVMEDLDLGPNGGLVYCMEY 81 (273)
T ss_pred CceeEEEEccCCCCcchHHHHHHHHHHhhCceeEEeecCHHHHhhCCcccccHHHhccHHHHHHHhccCCCccchhHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHhccCCCCEEEEeCCCcccHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccchhHHHhhhHHHHHH
Q 026486 81 LEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSA 160 (238)
Q Consensus 81 ~~~~~s~~la~~l~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~ 160 (238)
+..++ .|+...+..+ +.+|+|+|+|+|+++++|..+++++++.+++.+..++.||++||+++-|..+|+|+++.++++
T Consensus 82 l~~Nl-dwL~~~~Gd~-eddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsA 159 (273)
T KOG1534|consen 82 LLENL-DWLEEEIGDV-EDDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSA 159 (273)
T ss_pred HHHHH-HHHHhhccCc-cCCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHH
Confidence 99999 9999877755 889999999999999999999999999998889999999999999999999999999999999
Q ss_pred HHhhcCCeeeeecccccccc--hhhhhhhcccCHHHHHH--HhhhccchhHHHHHHHHHHHHhhCCCceeEEeeccCCCC
Q 026486 161 MVQLELPHVNILSKMDLVTN--KKEIEDYLNPESQFLLS--ELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESR 236 (238)
Q Consensus 161 ~~~~~~p~~~vlsk~dll~~--~~~l~~~~~~~~~~l~~--~l~~~~~~~~~~l~~~i~~~i~~~~~~~~~~l~~~~~~~ 236 (238)
|+.+++|||||+||.||++. ++.+++|+++|...+.+ ..+.. .+||++|+++|+.+++|||+|+|+|++.+||+|
T Consensus 160 Mi~lE~P~INvlsKMDLlk~~~k~~l~~Fl~~d~~~l~~~~~~~~~-s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeS 238 (273)
T KOG1534|consen 160 MISLEVPHINVLSKMDLLKDKNKKELERFLNPDEYLLLEDSEINLR-SPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEES 238 (273)
T ss_pred HHHhcCcchhhhhHHHHhhhhhHHHHHHhcCCchhhhhcccccccc-cHHHHHHHHHHHHHhccccceeeeecCCCCHHH
Confidence 99999999999999999975 34899999998776653 33333 369999999999999999999999999999998
Q ss_pred C
Q 026486 237 Y 237 (238)
Q Consensus 237 ~ 237 (238)
|
T Consensus 239 i 239 (273)
T KOG1534|consen 239 I 239 (273)
T ss_pred H
Confidence 6
No 3
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=100.00 E-value=1.4e-46 Score=321.22 Aligned_cols=222 Identities=51% Similarity=0.885 Sum_probs=173.4
Q ss_pred EEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCCCCCCCCCCCChhhhhhHHHHHHHcCCCCCCchhhhHHhhhhhHH
Q 026486 7 VIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLD 86 (238)
Q Consensus 7 IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~~~~~~s 86 (238)
|+||+||||||+|+.+..+++..+.++.+.|+||+++..+|++++||||.++++++|+++++||||+..+|++++..++
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDPa~~~~~y~~~iDird~i~~~evm~~~~LGPNGal~~~me~l~~~~- 79 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDPAVENLPYPPDIDIRDLISVEEVMEEYGLGPNGALIYCMEYLEENI- 79 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--TT-S--SS--SEEGGGT--HHHHHTT-T--HHHHHHHHHHHHGGGH-
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcchHhcccccCchHHHHhhhhhhhhhhhcCcCCcHHHHHHHHHHHHHH-
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCCEEEEeCCCcccHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccchhHHHhhhHHHHHHHHhhcC
Q 026486 87 DWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLEL 166 (238)
Q Consensus 87 ~~la~~l~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~~~ 166 (238)
.|+...+... +++|+|+|+|||++.++++..++.+++.|.+ +..+++|+++|++.+.+|.+|++.+++++++|+++++
T Consensus 80 d~l~~~i~~~-~~~y~l~DtPGQiElf~~~~~~~~i~~~L~~-~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~l 157 (238)
T PF03029_consen 80 DWLDEEIEKY-EDDYLLFDTPGQIELFTHSDSGRKIVERLQK-NGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLEL 157 (238)
T ss_dssp HHHHHHHHHH-H-SEEEEE--SSHHHHHHSHHHHHHHHTSSS-----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHhhc-CCcEEEEeCCCCEEEEEechhHHHHHHHHhh-hcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCC
Confidence 9998888665 7799999999999999999999889999976 7788899999999999999999999999999999999
Q ss_pred Ceeeeecccccccch--hhhhhhcccCHHHHHHHhhhccchhHHHHHHHHHHHHhhCCCc-eeEEeeccCCCCC
Q 026486 167 PHVNILSKMDLVTNK--KEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMV-SFMPLDLRKESRY 237 (238)
Q Consensus 167 p~~~vlsk~dll~~~--~~l~~~~~~~~~~l~~~l~~~~~~~~~~l~~~i~~~i~~~~~~-~~~~l~~~~~~~~ 237 (238)
|+++|+||+|+++++ ..++++.+ .+.+...++.. ++++++++++++++|+++ +|+|+|++|++++
T Consensus 158 P~vnvlsK~Dl~~~~~~~~l~~~~d--~~~l~~~~~~~----~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~ 225 (238)
T PF03029_consen 158 PHVNVLSKIDLLSKYLEFILEWFED--PDSLEDLLESD----YKKLNEEIAELLDDFGLVIRFIPLSSKDGEGM 225 (238)
T ss_dssp EEEEEE--GGGS-HHHHHHHHHHHS--HHHHHHHHHT-----HHHHHHHHHHHCCCCSSS---EE-BTTTTTTH
T ss_pred CEEEeeeccCcccchhHHHHHHhcC--hHHHHHHHHHH----HHHHHHHHHHHHhhcCCCceEEEEECCChHHH
Confidence 999999999999843 24444433 44454444432 899999999999999998 9999999999985
No 4
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=100.00 E-value=1.6e-32 Score=232.88 Aligned_cols=215 Identities=30% Similarity=0.507 Sum_probs=186.7
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCCCCCCCCCCCChhhhhhHHHHHHHcCCCCCCchhhhHHhh
Q 026486 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (238)
Q Consensus 2 ~~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~~ 81 (238)
+.++.++|.+||||||+++-|.+++....-..++.|+||+..+++|+.++||||.+.++++|++++|||||+...|++.+
T Consensus 19 p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsLNLF 98 (366)
T KOG1532|consen 19 PVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSLNLF 98 (366)
T ss_pred CcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhHHHH
Confidence 36889999999999999999999999988889999999999999999999999999999999999999999999999999
Q ss_pred hhhHH--HHHHHHHhccCCCCEEEEeCCCcccHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccchhHHHhhhHHHHH
Q 026486 82 EDNLD--DWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLS 159 (238)
Q Consensus 82 ~~~~s--~~la~~l~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~ 159 (238)
..++. ..+.+.... +-+++|+|.|+|++.+++.....-+...|+.. ..+|++|++|+.....|..|+|+++.+|+
T Consensus 99 ~tk~dqv~~~iek~~~--~~~~~liDTPGQIE~FtWSAsGsIIte~lass-~ptvv~YvvDt~rs~~p~tFMSNMlYAcS 175 (366)
T KOG1532|consen 99 ATKFDQVIELIEKRAE--EFDYVLIDTPGQIEAFTWSASGSIITETLASS-FPTVVVYVVDTPRSTSPTTFMSNMLYACS 175 (366)
T ss_pred HHHHHHHHHHHHHhhc--ccCEEEEcCCCceEEEEecCCccchHhhHhhc-CCeEEEEEecCCcCCCchhHHHHHHHHHH
Confidence 88874 344444444 56799999999999999999884556667654 46678999999999999999999999999
Q ss_pred HHHhhcCCeeeeecccccccchhhhhhhcccCHHHHHHHhhhccchhHHHHHHHHHHHHhhC
Q 026486 160 AMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEY 221 (238)
Q Consensus 160 ~~~~~~~p~~~vlsk~dll~~~~~l~~~~~~~~~~l~~~l~~~~~~~~~~l~~~i~~~i~~~ 221 (238)
.+++..+|.+.||||+|+....+.++++ .|.+.|.+++++........|.+++...+++|
T Consensus 176 ilyktklp~ivvfNK~Dv~d~~fa~eWm--~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeF 235 (366)
T KOG1532|consen 176 ILYKTKLPFIVVFNKTDVSDSEFALEWM--TDFEAFQEALNEAESSYMSNLTRSMSLMLEEF 235 (366)
T ss_pred HHHhccCCeEEEEecccccccHHHHHHH--HHHHHHHHHHHhhccchhHHhhhhHHHHHHHH
Confidence 9999999999999999999888666643 36788888888644445678888888877765
No 5
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=4e-31 Score=218.39 Aligned_cols=161 Identities=19% Similarity=0.235 Sum_probs=130.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC---------------CCCCCCCCCChhhhhh---------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------------ENFDYPVAMDIRELIS--------- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~---------------~~~~~~~~~~i~~~i~--------- 58 (238)
-+++|+||+|||||||+|||+++.+|++|+|.++|.++.. +++..+|..|+-+|+.
T Consensus 29 evv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~ 108 (240)
T COG1126 29 EVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKL 108 (240)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhHHHcCC
Confidence 4789999999999999999999999999999999976532 3444577888888875
Q ss_pred --------HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 026486 59 --------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (238)
Q Consensus 59 --------~~~~l~~~~l~~~~~~~~~~~~~~~~~--s~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~ 127 (238)
+.++++++||.... ..|+ ..+++++ +++|||||+. +|++++|||||+ |||+...+++ +.+++|+
T Consensus 109 ~k~eA~~~A~~lL~~VGL~~ka-~~yP-~qLSGGQqQRVAIARALaM--~P~vmLFDEPTSALDPElv~EVL-~vm~~LA 183 (240)
T COG1126 109 SKAEAREKALELLEKVGLADKA-DAYP-AQLSGGQQQRVAIARALAM--DPKVMLFDEPTSALDPELVGEVL-DVMKDLA 183 (240)
T ss_pred CHHHHHHHHHHHHHHcCchhhh-hhCc-cccCcHHHHHHHHHHHHcC--CCCEEeecCCcccCCHHHHHHHH-HHHHHHH
Confidence 67789999998764 3333 2455554 3999999999 999999999999 9999999999 9999999
Q ss_pred hCCCeEEEEEecccccccchhHHHhhhHHHHHHHHhhcCCeeeee
Q 026486 128 SRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNIL 172 (238)
Q Consensus 128 ~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~~~p~~~vl 172 (238)
++|.|.++|+ |.+.=..+.++++++...|.+..+.|+-.+|
T Consensus 184 ~eGmTMivVT----HEM~FAr~VadrviFmd~G~iie~g~p~~~f 224 (240)
T COG1126 184 EEGMTMIIVT----HEMGFAREVADRVIFMDQGKIIEEGPPEEFF 224 (240)
T ss_pred HcCCeEEEEe----chhHHHHHhhheEEEeeCCEEEEecCHHHHh
Confidence 9999999994 7777777777778777777655554543433
No 6
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.97 E-value=5.5e-31 Score=225.43 Aligned_cols=164 Identities=20% Similarity=0.311 Sum_probs=133.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-------CCCCC-C------CCCChhhhhh----------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-P------VAMDIRELIS---------- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~------~~~~i~~~i~---------- 58 (238)
-+++|+||||||||||+|+|+|+++|.+|+|.++|.++.. +.++| + ..++++|.+.
T Consensus 29 ~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~ 108 (258)
T COG1120 29 EITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLF 108 (258)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccc
Confidence 4689999999999999999999999999999999987643 22333 2 2334444442
Q ss_pred ----------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 026486 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (238)
Q Consensus 59 ----------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~ 125 (238)
+.++++.+|+.....+. .+.+++|.+ +|||++|+. +|+++++||||+ ||+..+.+++ +++++
T Consensus 109 ~~~~~~D~~~v~~aL~~~~~~~la~r~--~~~LSGGerQrv~iArALaQ--~~~iLLLDEPTs~LDi~~Q~evl-~ll~~ 183 (258)
T COG1120 109 GRPSKEDEEIVEEALELLGLEHLADRP--VDELSGGERQRVLIARALAQ--ETPILLLDEPTSHLDIAHQIEVL-ELLRD 183 (258)
T ss_pred cCCCHhHHHHHHHHHHHhCcHHHhcCc--ccccChhHHHHHHHHHHHhc--CCCEEEeCCCccccCHHHHHHHH-HHHHH
Confidence 77789999998765544 345766654 999999999 999999999999 9999999999 99999
Q ss_pred HHh-CCCeEEEEEecccccccchhHHHhhhHHHHHHHHhhcCCeeeeeccc
Q 026486 126 LKS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKM 175 (238)
Q Consensus 126 l~~-~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~~~p~~~vlsk~ 175 (238)
+++ +|.|+|+|. |++.-...|++.++++..+.+....++-+|++.-
T Consensus 184 l~~~~~~tvv~vl----HDlN~A~ryad~~i~lk~G~i~a~G~p~evlT~e 230 (258)
T COG1120 184 LNREKGLTVVMVL----HDLNLAARYADHLILLKDGKIVAQGTPEEVLTEE 230 (258)
T ss_pred HHHhcCCEEEEEe----cCHHHHHHhCCEEEEEECCeEEeecCcchhcCHH
Confidence 985 589998884 8888889999999988888887777776777643
No 7
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=5.8e-30 Score=218.26 Aligned_cols=148 Identities=17% Similarity=0.301 Sum_probs=121.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC----CCCCC-CC--------CCChhhhhh------------
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----ENFDY-PV--------AMDIRELIS------------ 58 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~----~~~~~-~~--------~~~i~~~i~------------ 58 (238)
+++|+||||||||||+|++.|+++|.+|+|.+.|.+... ..++| || -.+++|.+.
T Consensus 32 ~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~ 111 (254)
T COG1121 32 ITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRR 111 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCccccccccc
Confidence 689999999999999999999999999999999876533 23566 44 235666664
Q ss_pred --------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 026486 59 --------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (238)
Q Consensus 59 --------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~ 127 (238)
++++++++|+....... +..+++++. +.|||||+. +|++++||||++ +|+.++..++ +++++++
T Consensus 112 ~~~~d~~~v~~aL~~Vgm~~~~~r~--i~~LSGGQ~QRV~lARAL~~--~p~lllLDEP~~gvD~~~~~~i~-~lL~~l~ 186 (254)
T COG1121 112 LNKKDKEKVDEALERVGMEDLRDRQ--IGELSGGQKQRVLLARALAQ--NPDLLLLDEPFTGVDVAGQKEIY-DLLKELR 186 (254)
T ss_pred ccHHHHHHHHHHHHHcCchhhhCCc--ccccCcHHHHHHHHHHHhcc--CCCEEEecCCcccCCHHHHHHHH-HHHHHHH
Confidence 78899999998765444 345766653 999999999 999999999999 9999999999 9999999
Q ss_pred hCCCeEEEEEecccccccchhHHHhhhHHHHHH
Q 026486 128 SRNFNVCAVYLLDSQFITDVTKFISGCMASLSA 160 (238)
Q Consensus 128 ~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~ 160 (238)
++|+||++|+ |++.....|++.+++....
T Consensus 187 ~eg~tIl~vt----HDL~~v~~~~D~vi~Ln~~ 215 (254)
T COG1121 187 QEGKTVLMVT----HDLGLVMAYFDRVICLNRH 215 (254)
T ss_pred HCCCEEEEEe----CCcHHhHhhCCEEEEEcCe
Confidence 8899999995 8888888888866654333
No 8
>PRK13768 GTPase; Provisional
Probab=99.96 E-value=7.3e-27 Score=201.49 Aligned_cols=232 Identities=32% Similarity=0.581 Sum_probs=196.5
Q ss_pred CCeeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCCCCCCCCCCCChhhhhhHHHHHHHcCCCCCCchhhhHHh
Q 026486 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH 80 (238)
Q Consensus 1 ~~~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~ 80 (238)
|.+++++.|+.||||||++..++..+...+.++.+.+.||+....+|.++.++++.++..+++...+++|++...++++.
T Consensus 1 ~~~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~~~~~~~~~~~~i~~~~~~~~v~~~~~l~p~~~~~~~~~~ 80 (253)
T PRK13768 1 MMYIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPAVEYLPYTPDFDVRDYVTAREIMKKYGLGPNGALIASVDL 80 (253)
T ss_pred CcEEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCCccccCCCCCCcchhhheeHHHHHHHcCCCCchHHHHHHHH
Confidence 78999999999999999999999999877778999999999888899888999999999999999999999999988877
Q ss_pred hhhhHHHHHHHHHhccCCCCEEEEeCCCcccHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccchhHHHhhhHHHHHH
Q 026486 81 LEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSA 160 (238)
Q Consensus 81 ~~~~~s~~la~~l~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~ 160 (238)
...+. .++...+... +++++++|.|++.+++.++...+.+.+.+.+.. +-++++++|+....++.++..........
T Consensus 81 ~~~~~-~~l~~~l~~~-~~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~-~~~ii~liD~~~~~~~~d~~~~~~l~~~~ 157 (253)
T PRK13768 81 LLTKA-DEIKEEIESL-DADYVLVDTPGQMELFAFRESGRKLVERLSGSS-KSVVVFLIDAVLAKTPSDFVSLLLLALSV 157 (253)
T ss_pred HHHHH-HHHHHHHHhc-CCCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcC-CeEEEEEechHHhCCHHHHHHHHHHHHHH
Confidence 76666 6666666654 679999999999999988888877788776544 66678899999888999999888888888
Q ss_pred HHhhcCCeeeeecccccccch--hhhhhhcccCHHHHHHHhhhccchhHHHHHHHHHHHHhhCCC-ceeEEeeccCCCCC
Q 026486 161 MVQLELPHVNILSKMDLVTNK--KEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM-VSFMPLDLRKESRY 237 (238)
Q Consensus 161 ~~~~~~p~~~vlsk~dll~~~--~~l~~~~~~~~~~l~~~l~~~~~~~~~~l~~~i~~~i~~~~~-~~~~~l~~~~~~~~ 237 (238)
+...+.|.+.|+||+|++++. ..+..++. +++.+.+.+....+.+ +++++++++.+++++. ..+.|++..+++.+
T Consensus 158 ~~~~~~~~i~v~nK~D~~~~~~~~~~~~~l~-~~~~~~~~l~~~~~~~-~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl 235 (253)
T PRK13768 158 QLRLGLPQIPVLNKADLLSEEELERILKWLE-DPEYLLEELKLEKGLQ-GLLSLELLRALEETGLPVRVIPVSAKTGEGF 235 (253)
T ss_pred HHHcCCCEEEEEEhHhhcCchhHHHHHHHHh-CHHHHHHHHhcccchH-HHHHHHHHHHHHHHCCCCcEEEEECCCCcCH
Confidence 889999999999999999764 12233333 6667767776665656 9999999999999997 58999999887764
No 9
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.95 E-value=1.4e-28 Score=207.54 Aligned_cols=161 Identities=20% Similarity=0.209 Sum_probs=132.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC--------------CCCCCCCCCChhhhhh-----------
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------------ENFDYPVAMDIRELIS----------- 58 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~--------------~~~~~~~~~~i~~~i~----------- 58 (238)
+.+++||+||||||++|+|+++++|++|+|.++|.+... +.++.+|++|+.+++.
T Consensus 29 f~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k~ 108 (309)
T COG1125 29 FLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKE 108 (309)
T ss_pred EEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhcCCCHH
Confidence 578999999999999999999999999999999988754 3344578999999986
Q ss_pred -----HHHHHHHcCCCCC-CchhhhHHhhhhhH--HHHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-
Q 026486 59 -----LEDVMEELGLGPN-GGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS- 128 (238)
Q Consensus 59 -----~~~~l~~~~l~~~-~~~~~~~~~~~~~~--s~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~- 128 (238)
++|+|+.+||+|. -..+|+. .+++++ ++.+||||+. +|+++++|||+. |||.+|.++- +.+.++++
T Consensus 109 ~i~~r~~ELl~lvgL~p~~~~~RyP~-eLSGGQQQRVGv~RALAa--dP~ilLMDEPFgALDpI~R~~lQ-~e~~~lq~~ 184 (309)
T COG1125 109 RIKKRADELLDLVGLDPSEYADRYPH-ELSGGQQQRVGVARALAA--DPPILLMDEPFGALDPITRKQLQ-EEIKELQKE 184 (309)
T ss_pred HHHHHHHHHHHHhCCCHHHHhhcCch-hcCcchhhHHHHHHHHhc--CCCeEeecCCccccChhhHHHHH-HHHHHHHHH
Confidence 8899999999984 4455553 455554 3899999999 999999999998 9999999988 88888876
Q ss_pred CCCeEEEEEecccccccchhHHHhhhHHHHHHHHhhcCCeeeee
Q 026486 129 RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNIL 172 (238)
Q Consensus 129 ~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~~~p~~~vl 172 (238)
.++|+++|+ |.+.+.-+..+.+.++..|.+.-..++-+++
T Consensus 185 l~kTivfVT----HDidEA~kLadri~vm~~G~i~Q~~~P~~il 224 (309)
T COG1125 185 LGKTIVFVT----HDIDEALKLADRIAVMDAGEIVQYDTPDEIL 224 (309)
T ss_pred hCCEEEEEe----cCHHHHHhhhceEEEecCCeEEEeCCHHHHH
Confidence 599999994 9999999988877766666655444443444
No 10
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.95 E-value=4.3e-28 Score=213.24 Aligned_cols=157 Identities=15% Similarity=0.239 Sum_probs=126.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC------CCCC-------CCCCCChhhhhh-----------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFD-------YPVAMDIRELIS----------- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~------~~~~-------~~~~~~i~~~i~----------- 58 (238)
-++|++||||||||||+|+|+|+++|++|+|.+.|.++.. +.++ +++.+|++|++.
T Consensus 32 ei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~ 111 (293)
T COG1131 32 EIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKE 111 (293)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCChh
Confidence 3689999999999999999999999999999999988753 2233 345678887764
Q ss_pred -----HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCC
Q 026486 59 -----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN 130 (238)
Q Consensus 59 -----~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~ 130 (238)
++++++.++|.+... .....++.+++ +.||.+|+. +|+++||||||+ ||+.++..++ +++++++++|
T Consensus 112 ~~~~~~~~~l~~~~L~~~~~--~~~~~lS~G~kqrl~ia~aL~~--~P~lliLDEPt~GLDp~~~~~~~-~~l~~l~~~g 186 (293)
T COG1131 112 EAEERIEELLELFGLEDKAN--KKVRTLSGGMKQRLSIALALLH--DPELLILDEPTSGLDPESRREIW-ELLRELAKEG 186 (293)
T ss_pred HHHHHHHHHHHHcCCchhhC--cchhhcCHHHHHHHHHHHHHhc--CCCEEEECCCCcCCCHHHHHHHH-HHHHHHHhCC
Confidence 567899999987331 12345666665 899999999 999999999999 9999999999 9999998876
Q ss_pred -CeEEEEEecccccccchhHHHhhhHHHHHHHHhhcCCe
Q 026486 131 -FNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPH 168 (238)
Q Consensus 131 -~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~~~p~ 168 (238)
.+|+++ ||.+.+...+|+.+++...|.+....+.
T Consensus 187 ~~tvlis----sH~l~e~~~~~d~v~il~~G~~~~~g~~ 221 (293)
T COG1131 187 GVTILLS----THILEEAEELCDRVIILNDGKIIAEGTP 221 (293)
T ss_pred CcEEEEe----CCcHHHHHHhCCEEEEEeCCEEEEeCCH
Confidence 677555 7999999999887777766666555443
No 11
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.95 E-value=3.5e-28 Score=198.90 Aligned_cols=149 Identities=17% Similarity=0.192 Sum_probs=120.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-------------CCCCCCCCCChhhhhh-----------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------------ENFDYPVAMDIRELIS----------- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------------~~~~~~~~~~i~~~i~----------- 58 (238)
-+++|+|||||||||++|.|++++.|++|.|+++|.|... ...+++..+|.++++.
T Consensus 29 ei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~~l~~~ 108 (245)
T COG4555 29 EITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARLNGLSRK 108 (245)
T ss_pred eEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcceecCCcChhhhhhHHHHHHHHHHHhhhhhh
Confidence 3789999999999999999999999999999999987643 1233345678888875
Q ss_pred -----HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCC
Q 026486 59 -----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN 130 (238)
Q Consensus 59 -----~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~ 130 (238)
++++++.++|......+. ..++.+++ +.||||+.. +|++++||||++ ||..+++.+. ++++++++.|
T Consensus 109 ~~kari~~l~k~l~l~~~~~rRv--~~~S~G~kqkV~iARAlvh--~P~i~vlDEP~sGLDi~~~r~~~-dfi~q~k~eg 183 (245)
T COG4555 109 EIKARIAELSKRLQLLEYLDRRV--GEFSTGMKQKVAIARALVH--DPSILVLDEPTSGLDIRTRRKFH-DFIKQLKNEG 183 (245)
T ss_pred HHHHHHHHHHHHhChHHHHHHHH--hhhchhhHHHHHHHHHHhc--CCCeEEEcCCCCCccHHHHHHHH-HHHHHhhcCC
Confidence 677888888876543332 23555554 999999999 999999999999 9999999998 9999998889
Q ss_pred CeEEEEEecccccccchhHHHhhhHHHHHH
Q 026486 131 FNVCAVYLLDSQFITDVTKFISGCMASLSA 160 (238)
Q Consensus 131 ~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~ 160 (238)
+++++. ||.+.+.+..|+++++...|
T Consensus 184 r~viFS----SH~m~EvealCDrvivlh~G 209 (245)
T COG4555 184 RAVIFS----SHIMQEVEALCDRVIVLHKG 209 (245)
T ss_pred cEEEEe----cccHHHHHHhhheEEEEecC
Confidence 888655 79999999999955443333
No 12
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=1.2e-27 Score=202.00 Aligned_cols=147 Identities=13% Similarity=0.143 Sum_probs=116.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC---------CCCCCCCCCChhhhhh---------------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------ENFDYPVAMDIRELIS--------------- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~---------~~~~~~~~~~i~~~i~--------------- 58 (238)
-+++|+||+|||||||+|+++|+.+|++|+|.++|..+.. ++....|..|+.+|+.
T Consensus 30 EfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~ 109 (248)
T COG1116 30 EFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARE 109 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCcccchhhHHhhheehhhccccchHhHHH
Confidence 3689999999999999999999999999999999986522 2222244556777764
Q ss_pred -HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEE
Q 026486 59 -LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVC 134 (238)
Q Consensus 59 -~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~tvi 134 (238)
+.++++.+||....... + ..+++|++ ++|||+++. +|++|++|||++ ||..++..+...+++-+++.++|++
T Consensus 110 ~a~~~L~~VgL~~~~~~~-P-~qLSGGMrQRVaiARAL~~--~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~Tvl 185 (248)
T COG1116 110 RAKELLELVGLAGFEDKY-P-HQLSGGMRQRVAIARALAT--RPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVL 185 (248)
T ss_pred HHHHHHHHcCCcchhhcC-c-cccChHHHHHHHHHHHHhc--CCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEE
Confidence 78899999998765433 3 35777765 999999999 999999999998 9999999998445544556789999
Q ss_pred EEEecccccccchhHHHhhhHHH
Q 026486 135 AVYLLDSQFITDVTKFISGCMAS 157 (238)
Q Consensus 135 ~v~l~d~~~~~d~~~~~~~~l~~ 157 (238)
+|+ |.+.+.....+++++.
T Consensus 186 lVT----Hdi~EAv~LsdRivvl 204 (248)
T COG1116 186 LVT----HDVDEAVYLADRVVVL 204 (248)
T ss_pred EEe----CCHHHHHhhhCEEEEe
Confidence 994 8888776666655443
No 13
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=1.7e-27 Score=205.96 Aligned_cols=163 Identities=15% Similarity=0.173 Sum_probs=136.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC----------CCCCC-CC------CCChhhhhh--------
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-PV------AMDIRELIS-------- 58 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~----------~~~~~-~~------~~~i~~~i~-------- 58 (238)
+.||||++|||||||+|+++++.+|++|+|.++|.|... +.+++ +| ..|+.+++.
T Consensus 34 I~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~ 113 (339)
T COG1135 34 IFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGV 113 (339)
T ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEeccccccccchHHhhhhhhHhhcCC
Confidence 689999999999999999999999999999999977643 33443 33 345677664
Q ss_pred --------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 026486 59 --------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (238)
Q Consensus 59 --------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~ 127 (238)
+.++++.+||..... .|+. .++++++ ++|||||+. +|++|+.||||+ |||.+.+.++ +++++++
T Consensus 114 ~k~ei~~RV~elLelVgL~dk~~-~yP~-qLSGGQKQRVaIARALa~--~P~iLL~DEaTSALDP~TT~sIL-~LL~~In 188 (339)
T COG1135 114 PKAEIKQRVAELLELVGLSDKAD-RYPA-QLSGGQKQRVAIARALAN--NPKILLCDEATSALDPETTQSIL-ELLKDIN 188 (339)
T ss_pred CHHHHHHHHHHHHHHcCChhhhc-cCch-hcCcchhhHHHHHHHHhc--CCCEEEecCccccCChHHHHHHH-HHHHHHH
Confidence 888999999986543 3332 4556554 999999999 999999999999 9999999999 9999998
Q ss_pred h-CCCeEEEEEecccccccchhHHHhhhHHHHHHHHhhcCCeeeeeccc
Q 026486 128 S-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKM 175 (238)
Q Consensus 128 ~-~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~~~p~~~vlsk~ 175 (238)
+ .|.|+++|+ |.|.=..++|+++.++..|.+.-..+..++|++.
T Consensus 189 ~~lglTIvlIT----HEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF~~P 233 (339)
T COG1135 189 RELGLTIVLIT----HEMEVVKRICDRVAVLDQGRLVEEGTVSEVFANP 233 (339)
T ss_pred HHcCCEEEEEe----chHHHHHHHhhhheEeeCCEEEEeccHHHhhcCc
Confidence 6 599999994 9998889999999999999988888888888654
No 14
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.95 E-value=2e-27 Score=199.17 Aligned_cols=158 Identities=16% Similarity=0.166 Sum_probs=126.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC----------CCCCC-------CCCCChhhhhh-------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-------PVAMDIRELIS------- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~----------~~~~~-------~~~~~i~~~i~------- 58 (238)
-+.+|+||+|||||||+|+|.|+++|++|+|.+.|.+... ..+++ +.+++++||+.
T Consensus 35 ei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~~ 114 (263)
T COG1127 35 EILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHT 114 (263)
T ss_pred cEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhheeEEeeccccccccchhHhhheehHhhc
Confidence 3689999999999999999999999999999999988643 12222 34678888875
Q ss_pred ----------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 026486 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (238)
Q Consensus 59 ----------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~ 125 (238)
+..-++.+||.+..+..++. .++++++ ++||||++. +|+++++||||+ |||.+...+- +++++
T Consensus 115 ~lp~~~i~~lv~~KL~~VGL~~~~~~~~Ps-ELSGGM~KRvaLARAial--dPell~~DEPtsGLDPI~a~~~~-~LI~~ 190 (263)
T COG1127 115 KLPESLIRELVLMKLELVGLRGAAADLYPS-ELSGGMRKRVALARAIAL--DPELLFLDEPTSGLDPISAGVID-ELIRE 190 (263)
T ss_pred cCCHHHHHHHHHHHHHhcCCChhhhhhCch-hhcchHHHHHHHHHHHhc--CCCEEEecCCCCCCCcchHHHHH-HHHHH
Confidence 44557788998885566663 5677775 999999999 999999999999 9999999888 99999
Q ss_pred HHh-CCCeEEEEEecccccccchhHHHhhhHHHHHHHHhhcCCe
Q 026486 126 LKS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPH 168 (238)
Q Consensus 126 l~~-~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~~~p~ 168 (238)
+++ -|.|+++|+ |.+......++.+.+...+.+....|.
T Consensus 191 L~~~lg~T~i~VT----HDl~s~~~i~Drv~~L~~gkv~~~Gt~ 230 (263)
T COG1127 191 LNDALGLTVIMVT----HDLDSLLTIADRVAVLADGKVIAEGTP 230 (263)
T ss_pred HHHhhCCEEEEEE----CChHHHHhhhceEEEEeCCEEEEeCCH
Confidence 986 499999884 888877777776666555555444444
No 15
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.94 E-value=2.2e-27 Score=199.29 Aligned_cols=158 Identities=18% Similarity=0.194 Sum_probs=127.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCCC--------CC------CC---CCCCChhhhhh-------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE--------NF------DY---PVAMDIRELIS------- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~--------~~------~~---~~~~~i~~~i~------- 58 (238)
-+++|+|++|||||||+++++|+.+|+.|+|.++|...... .+ +| .|..++++.+.
T Consensus 34 e~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~ 113 (252)
T COG1124 34 ETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHG 113 (252)
T ss_pred CEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchhHHHHHhhhhccCC
Confidence 36899999999999999999999999999999999654321 11 11 33455665553
Q ss_pred -------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 026486 59 -------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (238)
Q Consensus 59 -------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (238)
+.++++.+|+.+.-..+++. .+++|++ ++|||||.. +|++||+||||+ ||...+.+++ +++.++++
T Consensus 114 ~~~~~~~i~~~L~~VgL~~~~l~R~P~-eLSGGQ~QRiaIARAL~~--~PklLIlDEptSaLD~siQa~Il-nlL~~l~~ 189 (252)
T COG1124 114 LSKSQQRIAELLDQVGLPPSFLDRRPH-ELSGGQRQRIAIARALIP--EPKLLILDEPTSALDVSVQAQIL-NLLLELKK 189 (252)
T ss_pred ccHHHHHHHHHHHHcCCCHHHHhcCch-hcChhHHHHHHHHHHhcc--CCCEEEecCchhhhcHHHHHHHH-HHHHHHHH
Confidence 68899999999876666664 4666654 999999999 999999999998 9999999999 99999976
Q ss_pred -CCCeEEEEEecccccccchhHHHhhhHHHHHHHHhhcCCe
Q 026486 129 -RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPH 168 (238)
Q Consensus 129 -~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~~~p~ 168 (238)
.+.+.++| +|.+.-...+|++++++..+.+.-..|.
T Consensus 190 ~~~lt~l~I----sHdl~~v~~~cdRi~Vm~~G~ivE~~~~ 226 (252)
T COG1124 190 ERGLTYLFI----SHDLALVEHMCDRIAVMDNGQIVEIGPT 226 (252)
T ss_pred hcCceEEEE----eCcHHHHHHHhhheeeeeCCeEEEeech
Confidence 58899888 5999888999998888777776544444
No 16
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.94 E-value=1.7e-26 Score=194.22 Aligned_cols=145 Identities=21% Similarity=0.228 Sum_probs=113.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-----------CCCCC-------CCCCChhhhhh-------
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-------PVAMDIRELIS------- 58 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-----------~~~~~-------~~~~~i~~~i~------- 58 (238)
.++|+||+|||||||++++.|+.+|++|.|.+.|.|... +.++| -+++|+.|++.
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~ 112 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAG 112 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcC
Confidence 689999999999999999999999999999999987642 33443 45678888876
Q ss_pred ---------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 026486 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (238)
Q Consensus 59 ---------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l 126 (238)
+.++++.+|+++.....++ ..++++++ ++||||++. +|++++.||||. ||..+.+.++ ++++++
T Consensus 113 ~~~~~~~~~~~~l~~~lgl~~~~~~~~p-~eLSGGqqQRVAIARAL~~--~P~iilADEPTgnLD~~t~~~V~-~ll~~~ 188 (226)
T COG1136 113 KSAGRRKRAAEELLEVLGLEDRLLKKKP-SELSGGQQQRVAIARALIN--NPKIILADEPTGNLDSKTAKEVL-ELLREL 188 (226)
T ss_pred CChhHHHHHHHHHHHhcCChhhhccCCc-hhcCHHHHHHHHHHHHHhc--CCCeEEeeCccccCChHHHHHHH-HHHHHH
Confidence 4567778899865432333 34666543 999999999 999999999998 9999999999 999999
Q ss_pred Hh-CCCeEEEEEecccccccchhHHHhhhHHH
Q 026486 127 KS-RNFNVCAVYLLDSQFITDVTKFISGCMAS 157 (238)
Q Consensus 127 ~~-~~~tvi~v~l~d~~~~~d~~~~~~~~l~~ 157 (238)
++ .|.|+++|+ |.. +.+.++++++..
T Consensus 189 ~~~~g~tii~VT----Hd~-~lA~~~dr~i~l 215 (226)
T COG1136 189 NKERGKTIIMVT----HDP-ELAKYADRVIEL 215 (226)
T ss_pred HHhcCCEEEEEc----CCH-HHHHhCCEEEEE
Confidence 76 488998884 443 233455554443
No 17
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.94 E-value=4.2e-27 Score=208.24 Aligned_cols=157 Identities=17% Similarity=0.178 Sum_probs=124.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC------CCCCC-------CCCCChhhhhh-----------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS----------- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~------~~~~~-------~~~~~i~~~i~----------- 58 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| ++.+++++++.
T Consensus 34 ei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~ 113 (306)
T PRK13537 34 ECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAA 113 (306)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcCCCHH
Confidence 4689999999999999999999999999999999988642 22333 34567777664
Q ss_pred -----HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCC
Q 026486 59 -----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN 130 (238)
Q Consensus 59 -----~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~ 130 (238)
+.++++.+++.+..... ...++++++ ++||++++. +|+++||||||+ ||+.+++.++ +++++++++|
T Consensus 114 ~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrl~la~aL~~--~P~lllLDEPt~gLD~~~~~~l~-~~l~~l~~~g 188 (306)
T PRK13537 114 AARALVPPLLEFAKLENKADAK--VGELSGGMKRRLTLARALVN--DPDVLVLDEPTTGLDPQARHLMW-ERLRSLLARG 188 (306)
T ss_pred HHHHHHHHHHHHcCCchHhcCc--hhhCCHHHHHHHHHHHHHhC--CCCEEEEeCCCcCCCHHHHHHHH-HHHHHHHhCC
Confidence 34667788886532222 245666654 899999999 999999999999 9999999999 9999997778
Q ss_pred CeEEEEEecccccccchhHHHhhhHHHHHHHHhhcCCe
Q 026486 131 FNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPH 168 (238)
Q Consensus 131 ~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~~~p~ 168 (238)
.|++++ ||.+.+...+|+.+++...+.+....+.
T Consensus 189 ~till~----sH~l~e~~~~~d~i~il~~G~i~~~g~~ 222 (306)
T PRK13537 189 KTILLT----THFMEEAERLCDRLCVIEEGRKIAEGAP 222 (306)
T ss_pred CEEEEE----CCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 888777 6999999999998887777666555444
No 18
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.94 E-value=6.1e-27 Score=206.74 Aligned_cols=157 Identities=17% Similarity=0.214 Sum_probs=122.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC------CCCCC-------CCCCChhhhhh-----------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS----------- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~------~~~~~-------~~~~~i~~~i~----------- 58 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| ++.+++++++.
T Consensus 20 e~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~ 99 (302)
T TIGR01188 20 EVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKD 99 (302)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHHHHHHHHHHcCCCHH
Confidence 3689999999999999999999999999999999987532 12333 23456666653
Q ss_pred -----HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCC
Q 026486 59 -----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN 130 (238)
Q Consensus 59 -----~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~ 130 (238)
+.++++.+++.+..... ...++++++ ++||++++. +|+++|+||||+ ||+.+++.++ +++++++++|
T Consensus 100 ~~~~~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrv~la~al~~--~p~lllLDEPt~gLD~~~~~~l~-~~l~~~~~~g 174 (302)
T TIGR01188 100 EAEERAEELLELFELGEAADRP--VGTYSGGMRRRLDIAASLIH--QPDVLFLDEPTTGLDPRTRRAIW-DYIRALKEEG 174 (302)
T ss_pred HHHHHHHHHHHHcCChhHhCCc--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCcCCCHHHHHHHH-HHHHHHHhCC
Confidence 45678888887532222 245666654 899999999 999999999999 9999999999 9999997778
Q ss_pred CeEEEEEecccccccchhHHHhhhHHHHHHHHhhcCCe
Q 026486 131 FNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPH 168 (238)
Q Consensus 131 ~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~~~p~ 168 (238)
.+++++ +|.+.+...+++.+++...+.+....+.
T Consensus 175 ~tvi~~----sH~~~~~~~~~d~v~~l~~G~i~~~g~~ 208 (302)
T TIGR01188 175 VTILLT----THYMEEADKLCDRIAIIDHGRIIAEGTP 208 (302)
T ss_pred CEEEEE----CCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 888777 6999988899988877766665544443
No 19
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.94 E-value=9.9e-27 Score=208.50 Aligned_cols=159 Identities=16% Similarity=0.205 Sum_probs=124.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC------CCCCC-------CCCCChhhhhh-----------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS----------- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~------~~~~~-------~~~~~i~~~i~----------- 58 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| ++.+++++++.
T Consensus 68 ei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~ 147 (340)
T PRK13536 68 ECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTR 147 (340)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcCCCHH
Confidence 4789999999999999999999999999999999987642 22333 33456666653
Q ss_pred -----HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCC
Q 026486 59 -----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN 130 (238)
Q Consensus 59 -----~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~ 130 (238)
++++++.+++.+..... ...++++++ +.||++++. +|+++||||||+ ||+.+++.++ +++++++++|
T Consensus 148 ~~~~~~~~ll~~~~L~~~~~~~--~~~LS~G~kqrv~lA~aL~~--~P~lLiLDEPt~gLD~~~r~~l~-~~l~~l~~~g 222 (340)
T PRK13536 148 EIEAVIPSLLEFARLESKADAR--VSDLSGGMKRRLTLARALIN--DPQLLILDEPTTGLDPHARHLIW-ERLRSLLARG 222 (340)
T ss_pred HHHHHHHHHHHHcCCchhhCCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhCC
Confidence 34567778887532222 245666654 899999999 999999999999 9999999999 9999997778
Q ss_pred CeEEEEEecccccccchhHHHhhhHHHHHHHHhhcCCeee
Q 026486 131 FNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVN 170 (238)
Q Consensus 131 ~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~~~p~~~ 170 (238)
.|++++ +|.+.+...+++.+++...|.+....+.-.
T Consensus 223 ~tilis----SH~l~e~~~~~d~i~il~~G~i~~~g~~~~ 258 (340)
T PRK13536 223 KTILLT----THFMEEAERLCDRLCVLEAGRKIAEGRPHA 258 (340)
T ss_pred CEEEEE----CCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 888777 699999999999888877776665554433
No 20
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=3.6e-27 Score=200.76 Aligned_cols=162 Identities=17% Similarity=0.202 Sum_probs=125.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC--------CCCCC-CC-------CCChhhhhh---------
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-PV-------AMDIRELIS--------- 58 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~--------~~~~~-~~-------~~~i~~~i~--------- 58 (238)
.++|+||||||||||+++++|+++|++|.|.++|.+... +.++| +| .-+|.+.+.
T Consensus 32 ~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~g~~ 111 (235)
T COG1122 32 RVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLP 111 (235)
T ss_pred EEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECcccccccCcHHHHHhhchhhcCCC
Confidence 589999999999999999999999999999999987541 22333 11 123444332
Q ss_pred -------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 026486 59 -------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (238)
Q Consensus 59 -------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (238)
+.++++.+|+....... ...+++++. ++||.+|+. +|+++||||||+ ||+..++.++ +++++|++
T Consensus 112 ~~e~~~rv~~~l~~vgl~~~~~r~--p~~LSGGqkqRvaIA~vLa~--~P~iliLDEPta~LD~~~~~~l~-~~l~~L~~ 186 (235)
T COG1122 112 REEIEERVAEALELVGLEELLDRP--PFNLSGGQKQRVAIAGVLAM--GPEILLLDEPTAGLDPKGRRELL-ELLKKLKE 186 (235)
T ss_pred HHHHHHHHHHHHHHcCchhhccCC--ccccCCcceeeHHhhHHHHc--CCCEEEEcCCCCCCCHHHHHHHH-HHHHHHHh
Confidence 77899999997652211 234555543 999999999 999999999999 9999999999 99999987
Q ss_pred C-CCeEEEEEecccccccchhHHHhhhHHHHHHHHhhcCCeeeeecc
Q 026486 129 R-NFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSK 174 (238)
Q Consensus 129 ~-~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~~~p~~~vlsk 174 (238)
+ |+|+|++ +|.+.....|++.+++...+.+..+.++-.+++.
T Consensus 187 ~~~~tii~~----tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 187 EGGKTIIIV----THDLELVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred cCCCeEEEE----eCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 6 6888877 5999999999998877777777665554444443
No 21
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=1.5e-26 Score=193.42 Aligned_cols=158 Identities=15% Similarity=0.193 Sum_probs=129.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC----------CCCCC-------CCCCChhhhhh--------
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-------PVAMDIRELIS-------- 58 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~----------~~~~~-------~~~~~i~~~i~-------- 58 (238)
.++||||+|||||||+|+|+|+..|++|+|.++|.++.. ..+++ .+..++.+++-
T Consensus 32 ~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s 111 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTS 111 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccch
Confidence 589999999999999999999999999999999987743 22333 23344444442
Q ss_pred ----------------HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHH
Q 026486 59 ----------------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVL 119 (238)
Q Consensus 59 ----------------~~~~l~~~~l~~~~~~~~~~~~~~~~~--s~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~ 119 (238)
+-+.++++|+.+..-.+ .+.+++++ +++|||+|+. +|++++.|||++ |||.+.+.+|
T Consensus 112 ~~~slfglfsk~dk~~Al~aLervgi~~~A~qr--a~~LSGGQQQRVaIARaL~Q--~pkiILADEPvasLDp~~a~~Vm 187 (258)
T COG3638 112 TWRSLFGLFSKEDKAQALDALERVGILDKAYQR--ASTLSGGQQQRVAIARALVQ--QPKIILADEPVASLDPESAKKVM 187 (258)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHH--hccCCcchhHHHHHHHHHhc--CCCEEecCCcccccChhhHHHHH
Confidence 67788899998764333 34566664 4999999999 999999999998 9999999999
Q ss_pred HHHHHHHHh-CCCeEEEEEecccccccchhHHHhhhHHHHHHHHhhcCCeee
Q 026486 120 RNFVDHLKS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVN 170 (238)
Q Consensus 120 ~~ll~~l~~-~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~~~p~~~ 170 (238)
++++++++ .|.|+++. .|.+.-..+|+++++-...+.+.++.|.-+
T Consensus 188 -~~l~~in~~~g~Tvi~n----LH~vdlA~~Y~~Riigl~~G~ivfDg~~~e 234 (258)
T COG3638 188 -DILKDINQEDGITVIVN----LHQVDLAKKYADRIIGLKAGRIVFDGPASE 234 (258)
T ss_pred -HHHHHHHHHcCCEEEEE----echHHHHHHHHhhheEecCCcEEEeCChhh
Confidence 99999986 58888655 488888889999999999999999998844
No 22
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.93 E-value=2.4e-26 Score=206.05 Aligned_cols=161 Identities=14% Similarity=0.180 Sum_probs=127.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC----------CCCCC-------CCCCChhhhhh--------
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-------PVAMDIRELIS-------- 58 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~----------~~~~~-------~~~~~i~~~i~-------- 58 (238)
+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| .+..++++++.
T Consensus 33 i~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~ 112 (343)
T TIGR02314 33 IYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNT 112 (343)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHcCC
Confidence 689999999999999999999999999999999987632 23443 22456766654
Q ss_pred --------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 026486 59 --------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (238)
Q Consensus 59 --------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~ 127 (238)
+.++++.+|+.+..... ...++++++ ++|||+|+. +|+++++||||+ ||+.++..++ +++++++
T Consensus 113 ~~~~~~~~v~e~l~~vgL~~~~~~~--~~~LSgGqkQRV~IARAL~~--~P~iLLlDEPts~LD~~t~~~i~-~lL~~l~ 187 (343)
T TIGR02314 113 PKDEIKRKVTELLALVGLGDKHDSY--PSNLSGGQKQRVAIARALAS--NPKVLLCDEATSALDPATTQSIL-ELLKEIN 187 (343)
T ss_pred CHHHHHHHHHHHHHHcCCchhhhCC--hhhCCHHHHHHHHHHHHHHh--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHH
Confidence 45778889987643222 235666654 999999999 999999999999 9999999999 9999997
Q ss_pred hC-CCeEEEEEecccccccchhHHHhhhHHHHHHHHhhcCCeeeeec
Q 026486 128 SR-NFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILS 173 (238)
Q Consensus 128 ~~-~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~~~p~~~vls 173 (238)
++ |.|++++ +|.+.....+++.++++..+.+....+.-.+++
T Consensus 188 ~~~g~tiili----TH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~ 230 (343)
T TIGR02314 188 RRLGLTILLI----THEMDVVKRICDCVAVISNGELIEQGTVSEIFS 230 (343)
T ss_pred HhcCCEEEEE----eCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence 64 8999888 499988889999888877777766656555543
No 23
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.93 E-value=1.1e-26 Score=195.09 Aligned_cols=168 Identities=14% Similarity=0.138 Sum_probs=134.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC---------------CCCCCCCCCChhhhhh---------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------------ENFDYPVAMDIRELIS--------- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~---------------~~~~~~~~~~i~~~i~--------- 58 (238)
-++++||||||||||++++++|+++|++|+|.+.|.|+.. +....++++++.|++.
T Consensus 31 ei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~ 110 (250)
T COG0411 31 EIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGL 110 (250)
T ss_pred eEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccceeecccccccCCCcHHHHHHHHhhhhhhh
Confidence 4789999999999999999999999999999999988643 2222356677776653
Q ss_pred -------------------HHHHHHHcCCCCCCchhhhHHhhhhh-HH-HHHHHHHhccCCCCEEEEeCCCc-ccHHhHH
Q 026486 59 -------------------LEDVMEELGLGPNGGLIYCMEHLEDN-LD-DWLAEELDNYLDDDYLVFDCPGQ-IELFTHV 116 (238)
Q Consensus 59 -------------------~~~~l~~~~l~~~~~~~~~~~~~~~~-~s-~~la~~l~~~~~p~~lilDEPt~-LD~~~~~ 116 (238)
+.++++.+||.+....... .++.+ ++ +.||++|+. +|++|+||||.+ +.+....
T Consensus 111 ~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~--~LsyG~qR~LEIArALa~--~P~lLLLDEPaAGln~~e~~ 186 (250)
T COG0411 111 SGLLGRPRARKEEREARERARELLEFVGLGELADRPAG--NLSYGQQRRLEIARALAT--QPKLLLLDEPAAGLNPEETE 186 (250)
T ss_pred hhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhh--cCChhHhHHHHHHHHHhc--CCCEEEecCccCCCCHHHHH
Confidence 4567888999876543322 23332 22 899999999 999999999999 9999999
Q ss_pred HHHHHHHHHHHh-CCCeEEEEEecccccccchhHHHhhhHHHHHHHHhhcCCeeeeeccccccc
Q 026486 117 PVLRNFVDHLKS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT 179 (238)
Q Consensus 117 ~~~~~ll~~l~~-~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~~~p~~~vlsk~dll~ 179 (238)
++. ++++++++ .|.|+++| -|.+.-+-.+++++.+...|.+..+.++-.|.+....++
T Consensus 187 ~l~-~~i~~i~~~~g~tillI----EHdM~~Vm~l~dri~Vl~~G~~IAeG~P~eV~~dp~Vie 245 (250)
T COG0411 187 ELA-ELIRELRDRGGVTILLI----EHDMKLVMGLADRIVVLNYGEVIAEGTPEEVRNNPRVIE 245 (250)
T ss_pred HHH-HHHHHHHhcCCcEEEEE----EeccHHHhhhccEEEeccCCcCcccCCHHHHhcCHHhHH
Confidence 999 99999987 46899888 488888888999999988898888888877776655543
No 24
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.93 E-value=5.6e-26 Score=191.00 Aligned_cols=144 Identities=14% Similarity=0.208 Sum_probs=109.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC----------CCCCC-C------CCCChhhhhh-------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-P------VAMDIRELIS------- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~----------~~~~~-~------~~~~i~~~i~------- 58 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. +.++| + +..++.+++.
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~ 109 (216)
T TIGR00960 30 EMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIG 109 (216)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHhcC
Confidence 3689999999999999999999999999999999976521 22344 2 2346666543
Q ss_pred ---------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 026486 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (238)
Q Consensus 59 ---------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l 126 (238)
+.++++.+|+.+..... ...++++++ ++||++++. +|+++|+||||+ ||+.++..+. ++++++
T Consensus 110 ~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~ 184 (216)
T TIGR00960 110 VPPRDANERVSAALEKVGLEGKAHAL--PMQLSGGEQQRVAIARAIVH--KPPLLLADEPTGNLDPELSRDIM-RLFEEF 184 (216)
T ss_pred CCHHHHHHHHHHHHHHcCChhhhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCcCCHHHHHHHH-HHHHHH
Confidence 45577888886542221 234555543 899999999 999999999999 9999999999 889998
Q ss_pred HhCCCeEEEEEecccccccchhHHHhhhH
Q 026486 127 KSRNFNVCAVYLLDSQFITDVTKFISGCM 155 (238)
Q Consensus 127 ~~~~~tvi~v~l~d~~~~~d~~~~~~~~l 155 (238)
++.|.+++++ +|.......+++.++
T Consensus 185 ~~~~~tii~v----sH~~~~~~~~~d~i~ 209 (216)
T TIGR00960 185 NRRGTTVLVA----THDINLVETYRHRTL 209 (216)
T ss_pred HHCCCEEEEE----eCCHHHHHHhCCEEE
Confidence 7678888777 477776666666543
No 25
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.93 E-value=3.5e-26 Score=184.62 Aligned_cols=157 Identities=17% Similarity=0.190 Sum_probs=125.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCC-----CCCCCC-------CCCCChhhhhh------------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----AENFDY-------PVAMDIRELIS------------ 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~-----~~~~~~-------~~~~~i~~~i~------------ 58 (238)
-+++|+||+|||||||++.++|+..|.+|.|.++|.|.. .+.+.. +..+|+.+++.
T Consensus 26 e~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~LkL~a~ 105 (231)
T COG3840 26 EIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAE 105 (231)
T ss_pred cEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCCcccccCHH
Confidence 468999999999999999999999999999999998753 222221 23456666664
Q ss_pred ----HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CC
Q 026486 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RN 130 (238)
Q Consensus 59 ----~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~ 130 (238)
++.++.++|++....+.. ..++++.+ +++||++.. +.+++++|||++ |||..+.++. .++.+++. ++
T Consensus 106 ~r~~v~~aa~~vGl~~~~~RLP--~~LSGGqRQRvALARclvR--~~PilLLDEPFsALdP~LR~eMl-~Lv~~l~~E~~ 180 (231)
T COG3840 106 QREKVEAAAAQVGLAGFLKRLP--GELSGGQRQRVALARCLVR--EQPILLLDEPFSALDPALRAEML-ALVSQLCDERK 180 (231)
T ss_pred HHHHHHHHHHHhChhhHhhhCc--cccCchHHHHHHHHHHHhc--cCCeEEecCchhhcCHHHHHHHH-HHHHHHHHhhC
Confidence 788889999987653332 23555543 999999999 999999999998 9999999999 99999985 68
Q ss_pred CeEEEEEecccccccchhHHHhhhHHHHHHHHhhcCCe
Q 026486 131 FNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPH 168 (238)
Q Consensus 131 ~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~~~p~ 168 (238)
.|+++| +|..+|.....+++++...|.+....+.
T Consensus 181 ~TllmV----TH~~~Da~~ia~~~~fl~~Gri~~~g~~ 214 (231)
T COG3840 181 MTLLMV----THHPEDAARIADRVVFLDNGRIAAQGST 214 (231)
T ss_pred CEEEEE----eCCHHHHHHhhhceEEEeCCEEEeeccH
Confidence 999999 4999999999888877766666555444
No 26
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.93 E-value=2.9e-26 Score=203.21 Aligned_cols=150 Identities=18% Similarity=0.153 Sum_probs=119.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC------------CCCCCCCCCChhhhhh-------------
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------------ENFDYPVAMDIRELIS------------- 58 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~------------~~~~~~~~~~i~~~i~------------- 58 (238)
+++++||||||||||+|+|+|+.+|++|+|.++|.+... ++.+.+|.+|+++|+.
T Consensus 31 f~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei 110 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEI 110 (338)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhCCCchHHH
Confidence 578999999999999999999999999999999987643 3344477889999986
Q ss_pred ---HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CCC
Q 026486 59 ---LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNF 131 (238)
Q Consensus 59 ---~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~~ 131 (238)
+.++.+.+++.+...... ..++++++ +++|||+.. +|++++||||.+ ||...+..+. ..++++++ .|.
T Consensus 111 ~~rV~eva~~L~l~~lL~r~P--~~LSGGQrQRVAlaRAlVr--~P~v~L~DEPlSnLDa~lR~~mr-~ei~~lh~~l~~ 185 (338)
T COG3839 111 DKRVKEVAKLLGLEHLLNRKP--LQLSGGQRQRVALARALVR--KPKVFLLDEPLSNLDAKLRVLMR-SEIKKLHERLGT 185 (338)
T ss_pred HHHHHHHHHHcCChhHHhcCc--ccCChhhHHHHHHHHHHhc--CCCEEEecCchhHhhHHHHHHHH-HHHHHHHHhcCC
Confidence 778999999987654432 24555543 999999999 999999999998 9999998887 77888876 588
Q ss_pred eEEEEEecccccccchhHHHhhhHHHHHHHH
Q 026486 132 NVCAVYLLDSQFITDVTKFISGCMASLSAMV 162 (238)
Q Consensus 132 tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~ 162 (238)
|+|.|+ |+-.+.-...+.+.++..|.+
T Consensus 186 T~IYVT----HDq~EAmtladri~Vm~~G~i 212 (338)
T COG3839 186 TTIYVT----HDQVEAMTLADRIVVMNDGRI 212 (338)
T ss_pred cEEEEc----CCHHHHHhhCCEEEEEeCCee
Confidence 998884 776666666555554443433
No 27
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.93 E-value=4.7e-26 Score=202.84 Aligned_cols=150 Identities=15% Similarity=0.147 Sum_probs=120.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-----C-------CCCCCCCCChhhhhh-------------
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----E-------NFDYPVAMDIRELIS------------- 58 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-----~-------~~~~~~~~~i~~~i~------------- 58 (238)
+++++|||||||||++|+|+|+..|++|+|.++|.++.. + +.+.+|.++|.+||.
T Consensus 33 f~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~ 112 (352)
T COG3842 33 FVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAE 112 (352)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceeecCcccCCCCcHHHHhhhhhhhcCCCCHHH
Confidence 578999999999999999999999999999999987643 2 333478889999864
Q ss_pred ----HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CC
Q 026486 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RN 130 (238)
Q Consensus 59 ----~~~~l~~~~l~~~~~~~~~~~~~~~~~--s~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~ 130 (238)
+.++++.+++++.+.... ..+++++ +++|||||+. +|++|+||||.+ ||...+.++. .-++++++ .|
T Consensus 113 i~~rv~e~L~lV~L~~~~~R~p--~qLSGGQqQRVALARAL~~--~P~vLLLDEPlSaLD~kLR~~mr-~Elk~lq~~~g 187 (352)
T COG3842 113 IKARVEEALELVGLEGFADRKP--HQLSGGQQQRVALARALVP--EPKVLLLDEPLSALDAKLREQMR-KELKELQRELG 187 (352)
T ss_pred HHHHHHHHHHHcCchhhhhhCh--hhhChHHHHHHHHHHHhhc--CcchhhhcCcccchhHHHHHHHH-HHHHHHHHhcC
Confidence 788999999998764443 3466654 3999999999 999999999998 9999999988 66777764 69
Q ss_pred CeEEEEEecccccccchhHHHhhhHHHHHHHH
Q 026486 131 FNVCAVYLLDSQFITDVTKFISGCMASLSAMV 162 (238)
Q Consensus 131 ~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~ 162 (238)
.|.|+|+ |.-.+.-...+++.++..+.+
T Consensus 188 iT~i~VT----HDqeEAl~msDrI~Vm~~G~I 215 (352)
T COG3842 188 ITFVYVT----HDQEEALAMSDRIAVMNDGRI 215 (352)
T ss_pred CeEEEEE----CCHHHHhhhccceEEccCCce
Confidence 9999995 887777666665544444443
No 28
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=6.1e-26 Score=193.17 Aligned_cols=150 Identities=18% Similarity=0.212 Sum_probs=112.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC----------CCCCC-C------CCCChhhhhh-------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-P------VAMDIRELIS------- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~----------~~~~~-~------~~~~i~~~i~------- 58 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| + +..++.+++.
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~ 106 (235)
T cd03261 27 EILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHT 106 (235)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhcc
Confidence 3689999999999999999999999999999999876421 12333 2 2346655542
Q ss_pred ----------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 026486 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (238)
Q Consensus 59 ----------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~ 125 (238)
+.++++.+++.+..... ...++++++ ++||++++. +|+++|+||||+ ||+.++..++ +++++
T Consensus 107 ~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrv~ia~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~ 181 (235)
T cd03261 107 RLSEEEIREIVLEKLEAVGLRGAEDLY--PAELSGGMKKRVALARALAL--DPELLLYDEPTAGLDPIASGVID-DLIRS 181 (235)
T ss_pred CCCHHHHHHHHHHHHHHcCCchhhcCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEecCCcccCCHHHHHHHH-HHHHH
Confidence 34567788886532221 235666654 899999999 999999999999 9999999999 99999
Q ss_pred HHh-CCCeEEEEEecccccccchhHHHhhhHHHHHHH
Q 026486 126 LKS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAM 161 (238)
Q Consensus 126 l~~-~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~ 161 (238)
+++ .|.+++++ +|...+...+++.+++...+.
T Consensus 182 ~~~~~~~tvi~v----sH~~~~~~~~~d~v~~l~~G~ 214 (235)
T cd03261 182 LKKELGLTSIMV----THDLDTAFAIADRIAVLYDGK 214 (235)
T ss_pred HHHhcCcEEEEE----ecCHHHHHHhcCEEEEEECCe
Confidence 876 48888877 488877777777655444433
No 29
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=4.8e-26 Score=205.24 Aligned_cols=155 Identities=14% Similarity=0.124 Sum_probs=121.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-----CCCCC-------CCCCChhhhhh-------------
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDY-------PVAMDIRELIS------------- 58 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-----~~~~~-------~~~~~i~~~i~------------- 58 (238)
+++|+||||||||||+++|+|+.+|++|+|.++|.++.. ..++| ++.+++++++.
T Consensus 32 ~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~ 111 (356)
T PRK11650 32 FIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEI 111 (356)
T ss_pred EEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhcCCCHHHH
Confidence 689999999999999999999999999999999986532 22333 44567777764
Q ss_pred ---HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC-CC
Q 026486 59 ---LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NF 131 (238)
Q Consensus 59 ---~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~~ 131 (238)
+.++++.+|+.+..... ...++++++ ++|||+++. +|++++||||++ ||+.++..+. +.++++.++ |.
T Consensus 112 ~~~~~~~l~~~gL~~~~~~~--~~~LSgGq~QRvalARAL~~--~P~llLLDEP~s~LD~~~r~~l~-~~l~~l~~~~g~ 186 (356)
T PRK11650 112 EERVAEAARILELEPLLDRK--PRELSGGQRQRVAMGRAIVR--EPAVFLFDEPLSNLDAKLRVQMR-LEIQRLHRRLKT 186 (356)
T ss_pred HHHHHHHHHHcCChhHhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCC
Confidence 45678888997643222 234666554 999999999 999999999998 9999999999 888888764 88
Q ss_pred eEEEEEecccccccchhHHHhhhHHHHHHHHhhcCC
Q 026486 132 NVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELP 167 (238)
Q Consensus 132 tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~~~p 167 (238)
++|+| +|...+...+++.+++...+.+....+
T Consensus 187 tii~v----THd~~ea~~l~D~i~vl~~G~i~~~g~ 218 (356)
T PRK11650 187 TSLYV----THDQVEAMTLADRVVVMNGGVAEQIGT 218 (356)
T ss_pred EEEEE----eCCHHHHHHhCCEEEEEeCCEEEEECC
Confidence 99888 488888888888776666555543333
No 30
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.93 E-value=6.9e-26 Score=200.12 Aligned_cols=156 Identities=17% Similarity=0.207 Sum_probs=119.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC------CCCCC-------CCCCChhhhhh-----------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS----------- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~------~~~~~-------~~~~~i~~~i~----------- 58 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| .+..++++++.
T Consensus 31 e~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~ 110 (303)
T TIGR01288 31 ECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTR 110 (303)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHcCCCHH
Confidence 3689999999999999999999999999999999987531 22333 23456666653
Q ss_pred -----HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCC
Q 026486 59 -----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN 130 (238)
Q Consensus 59 -----~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~ 130 (238)
++++++.+++.+..... ...++++++ ++||++++. +|+++||||||+ ||+.++..++ +++++++++|
T Consensus 111 ~~~~~~~~ll~~~~l~~~~~~~--~~~LSgG~~qrv~la~al~~--~p~lllLDEPt~gLD~~~~~~l~-~~l~~~~~~g 185 (303)
T TIGR01288 111 EIEAVIPSLLEFARLESKADVR--VALLSGGMKRRLTLARALIN--DPQLLILDEPTTGLDPHARHLIW-ERLRSLLARG 185 (303)
T ss_pred HHHHHHHHHHHHCCChhHhcCc--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCcCCCHHHHHHHH-HHHHHHHhCC
Confidence 23467777876532222 245666654 899999999 999999999999 9999999999 9999987778
Q ss_pred CeEEEEEecccccccchhHHHhhhHHHHHHHHhhcCC
Q 026486 131 FNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELP 167 (238)
Q Consensus 131 ~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~~~p 167 (238)
.+++++ +|...+...+++.+++...+.+....+
T Consensus 186 ~til~~----sH~~~~~~~~~d~i~~l~~G~i~~~g~ 218 (303)
T TIGR01288 186 KTILLT----THFMEEAERLCDRLCVLESGRKIAEGR 218 (303)
T ss_pred CEEEEE----CCCHHHHHHhCCEEEEEECCEEEEEcC
Confidence 888777 698888888888877766665544433
No 31
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=9.8e-26 Score=189.11 Aligned_cols=145 Identities=16% Similarity=0.151 Sum_probs=109.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-----CCCCC-CC------CCChhhhhh------------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDY-PV------AMDIRELIS------------ 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-----~~~~~-~~------~~~i~~~i~------------ 58 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| ++ ..++++++.
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~ 106 (213)
T cd03259 27 EFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAE 106 (213)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHHHHHHhHHHHcCCCHHH
Confidence 3689999999999999999999999999999999876532 22333 22 345665543
Q ss_pred ----HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CC
Q 026486 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RN 130 (238)
Q Consensus 59 ----~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~ 130 (238)
+.++++.+++.+..... ...++++++ ++||++++. +|+++|+||||+ ||+.++..++ ++++++++ .|
T Consensus 107 ~~~~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrl~la~al~~--~p~~lllDEPt~~LD~~~~~~l~-~~l~~~~~~~~ 181 (213)
T cd03259 107 IRARVRELLELVGLEGLLNRY--PHELSGGQQQRVALARALAR--EPSLLLLDEPLSALDAKLREELR-EELKELQRELG 181 (213)
T ss_pred HHHHHHHHHHHcCChhhhhcC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHHcC
Confidence 34577788886532111 234555544 899999999 999999999999 9999999999 99999876 48
Q ss_pred CeEEEEEecccccccchhHHHhhhHH
Q 026486 131 FNVCAVYLLDSQFITDVTKFISGCMA 156 (238)
Q Consensus 131 ~tvi~v~l~d~~~~~d~~~~~~~~l~ 156 (238)
.+++++ +|.......+++.++.
T Consensus 182 ~tii~~----sH~~~~~~~~~d~v~~ 203 (213)
T cd03259 182 ITTIYV----THDQEEALALADRIAV 203 (213)
T ss_pred CEEEEE----ecCHHHHHHhcCEEEE
Confidence 888777 4777666666665543
No 32
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.2e-25 Score=198.83 Aligned_cols=166 Identities=20% Similarity=0.193 Sum_probs=126.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCC-------------------------------CCCCCC-CC--
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-------------------------------AENFDY-PV-- 49 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~-------------------------------~~~~~~-~~-- 49 (238)
+++|+||||||||||+++|+|+++|++|+|+++|.+.. ...++| +|
T Consensus 35 ~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~ 114 (305)
T PRK13651 35 FIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFA 114 (305)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccccccccccccccccccchHHHHHhceEEEeeCc
Confidence 68999999999999999999999999999999875431 112334 22
Q ss_pred -----CCChhhhhh----------------HHHHHHHcCCCC-CCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEe
Q 026486 50 -----AMDIRELIS----------------LEDVMEELGLGP-NGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFD 105 (238)
Q Consensus 50 -----~~~i~~~i~----------------~~~~l~~~~l~~-~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilD 105 (238)
..++++++. +.++++.+|+.+ .... ....++++++ ++||++++. +|+++|+|
T Consensus 115 ~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~--~~~~LSgGqkqrvalA~aL~~--~P~lLlLD 190 (305)
T PRK13651 115 EYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQR--SPFELSGGQKRRVALAGILAM--EPDFLVFD 190 (305)
T ss_pred ccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhC--ChhhCCHHHHHHHHHHHHHHh--CCCEEEEe
Confidence 125655553 567788899963 2211 1234656554 999999999 99999999
Q ss_pred CCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccchhHHHhhhHHHHHHHHhhcCCeeeeecccccc
Q 026486 106 CPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV 178 (238)
Q Consensus 106 EPt~-LD~~~~~~~~~~ll~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~~~p~~~vlsk~dll 178 (238)
|||+ ||+.++..++ ++++++++.|.|++++ +|.+.....+++++++...+.+....+.-++++..+++
T Consensus 191 EPt~~LD~~~~~~l~-~~l~~l~~~g~tiiiv----tHd~~~~~~~adrv~vl~~G~i~~~g~~~~~~~~~~~~ 259 (305)
T PRK13651 191 EPTAGLDPQGVKEIL-EIFDNLNKQGKTIILV----THDLDNVLEWTKRTIFFKDGKIIKDGDTYDILSDNKFL 259 (305)
T ss_pred CCCCCCCHHHHHHHH-HHHHHHHHCCCEEEEE----eeCHHHHHHhCCEEEEEECCEEEEECCHHHHhcCHHHH
Confidence 9999 9999999999 9999997778899888 48888888899988887777776666655555544443
No 33
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.93 E-value=8.4e-26 Score=188.57 Aligned_cols=144 Identities=18% Similarity=0.177 Sum_probs=110.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC----CCCCC-CC-------CCChhhhhh------------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----ENFDY-PV-------AMDIRELIS------------ 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~----~~~~~-~~-------~~~i~~~i~------------ 58 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. +.++| ++ ..++++++.
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~ 106 (205)
T cd03226 27 EIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQ 106 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHHHHhhhhhhcCccHHH
Confidence 3689999999999999999999999999999999987521 22333 11 235665553
Q ss_pred HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEE
Q 026486 59 LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCA 135 (238)
Q Consensus 59 ~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~tvi~ 135 (238)
+.++++.+++.+..... ...++++++ ++||++++. +|+++|+||||+ ||+.++..+. +++++++++|.++++
T Consensus 107 ~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~tii~ 181 (205)
T cd03226 107 AETVLKDLDLYALKERH--PLSLSGGQKQRLAIAAALLS--GKDLLIFDEPTSGLDYKNMERVG-ELIRELAAQGKAVIV 181 (205)
T ss_pred HHHHHHHcCCchhcCCC--chhCCHHHHHHHHHHHHHHh--CCCEEEEeCCCccCCHHHHHHHH-HHHHHHHHCCCEEEE
Confidence 45678888887543222 234555544 899999999 999999999999 9999999999 899998767888877
Q ss_pred EEecccccccchhHHHhhhH
Q 026486 136 VYLLDSQFITDVTKFISGCM 155 (238)
Q Consensus 136 v~l~d~~~~~d~~~~~~~~l 155 (238)
+ +|...+...+++.++
T Consensus 182 ~----sH~~~~~~~~~d~i~ 197 (205)
T cd03226 182 I----THDYEFLAKVCDRVL 197 (205)
T ss_pred E----eCCHHHHHHhCCEEE
Confidence 7 487776666666443
No 34
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.93 E-value=1.1e-25 Score=191.58 Aligned_cols=149 Identities=17% Similarity=0.186 Sum_probs=111.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC--------CCCCC-C------CCCChhhhhh---------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-P------VAMDIRELIS--------- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~--------~~~~~-~------~~~~i~~~i~--------- 58 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| + +..++++++.
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~ 106 (236)
T cd03219 27 EIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGS 106 (236)
T ss_pred cEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCCCHHHHHHHHHhhcccc
Confidence 3689999999999999999999999999999999976532 12333 2 2345555432
Q ss_pred -----------------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHH
Q 026486 59 -----------------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (238)
Q Consensus 59 -----------------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~ 118 (238)
+.++++.+|+.+.... ....++++++ +++|++++. +|+++|+||||+ ||+.++..+
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~~~LSgG~~qrv~la~al~~--~p~llllDEPt~~LD~~~~~~l 182 (236)
T cd03219 107 GLLLARARREEREARERAEELLERVGLADLADR--PAGELSYGQQRRLEIARALAT--DPKLLLLDEPAAGLNPEETEEL 182 (236)
T ss_pred ccccccccccHHHHHHHHHHHHHHcCccchhhC--ChhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHH
Confidence 3456777887653221 1244666554 899999999 999999999999 999999999
Q ss_pred HHHHHHHHHhCCCeEEEEEecccccccchhHHHhhhHHHHHH
Q 026486 119 LRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSA 160 (238)
Q Consensus 119 ~~~ll~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~ 160 (238)
+ +++++++++|.++|++ +|...+...+++.+++...+
T Consensus 183 ~-~~l~~~~~~~~tii~v----sH~~~~~~~~~d~i~~l~~G 219 (236)
T cd03219 183 A-ELIRELRERGITVLLV----EHDMDVVMSLADRVTVLDQG 219 (236)
T ss_pred H-HHHHHHHHCCCEEEEE----ecCHHHHHHhCCEEEEEeCC
Confidence 9 8999987678888777 48887777777755544333
No 35
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.93 E-value=1.2e-25 Score=189.18 Aligned_cols=143 Identities=19% Similarity=0.241 Sum_probs=107.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-----------CCCCC-------CCCCChhhhhh------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-------PVAMDIRELIS------ 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-----------~~~~~-------~~~~~i~~~i~------ 58 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| .+..++++++.
T Consensus 31 ~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~ 110 (218)
T cd03255 31 EFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLA 110 (218)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhc
Confidence 3689999999999999999999999999999999876531 22333 22345655543
Q ss_pred ----------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 026486 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (238)
Q Consensus 59 ----------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~ 125 (238)
+.++++.+|+.+..... ...++++++ ++||++++. +|+++|+|||++ ||+.++..+. +++++
T Consensus 111 ~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~la~al~~--~p~lllLDEP~~~LD~~~~~~l~-~~l~~ 185 (218)
T cd03255 111 GVPKKERRERAEELLERVGLGDRLNHY--PSELSGGQQQRVAIARALAN--DPKIILADEPTGNLDSETGKEVM-ELLRE 185 (218)
T ss_pred CCCHHHHHHHHHHHHHHcCCchhhhcC--hhhcCHHHHHHHHHHHHHcc--CCCEEEEcCCcccCCHHHHHHHH-HHHHH
Confidence 45677888886542221 234555554 899999999 999999999999 9999999999 99999
Q ss_pred HHh-CCCeEEEEEecccccccchhHHHhhhH
Q 026486 126 LKS-RNFNVCAVYLLDSQFITDVTKFISGCM 155 (238)
Q Consensus 126 l~~-~~~tvi~v~l~d~~~~~d~~~~~~~~l 155 (238)
+++ .|.+++++ +|...+.. +++.++
T Consensus 186 ~~~~~~~tii~~----sH~~~~~~-~~d~v~ 211 (218)
T cd03255 186 LNKEAGTTIVVV----THDPELAE-YADRII 211 (218)
T ss_pred HHHhcCCeEEEE----ECCHHHHh-hhcEEE
Confidence 876 58888877 47766554 555443
No 36
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.93 E-value=1.6e-25 Score=188.42 Aligned_cols=145 Identities=17% Similarity=0.260 Sum_probs=110.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC------CCCCC-------CCCCChhhhhh-----------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS----------- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~------~~~~~-------~~~~~i~~~i~----------- 58 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| ++..++++++.
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~ 111 (218)
T cd03266 32 EVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGD 111 (218)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHcCCCHH
Confidence 3689999999999999999999999999999999876532 12223 23346666553
Q ss_pred -----HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCC
Q 026486 59 -----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN 130 (238)
Q Consensus 59 -----~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~ 130 (238)
+.++++.+|+.+.... ....++++++ ++||++++. +|+++|+||||+ ||+.++..+. +++++++++|
T Consensus 112 ~~~~~~~~~l~~~~l~~~~~~--~~~~LS~G~~qrv~laral~~--~p~illlDEPt~~LD~~~~~~l~-~~l~~~~~~~ 186 (218)
T cd03266 112 ELTARLEELADRLGMEELLDR--RVGGFSTGMRQKVAIARALVH--DPPVLLLDEPTTGLDVMATRALR-EFIRQLRALG 186 (218)
T ss_pred HHHHHHHHHHHHcCCHHHHhh--hhhhcCHHHHHHHHHHHHHhc--CCCEEEEcCCCcCCCHHHHHHHH-HHHHHHHHCC
Confidence 4557888888643222 1234555544 899999999 999999999999 9999999999 8999987678
Q ss_pred CeEEEEEecccccccchhHHHhhhHH
Q 026486 131 FNVCAVYLLDSQFITDVTKFISGCMA 156 (238)
Q Consensus 131 ~tvi~v~l~d~~~~~d~~~~~~~~l~ 156 (238)
.++|++ +|...+...+++.++.
T Consensus 187 ~tii~~----tH~~~~~~~~~d~i~~ 208 (218)
T cd03266 187 KCILFS----THIMQEVERLCDRVVV 208 (218)
T ss_pred CEEEEE----eCCHHHHHHhcCEEEE
Confidence 888877 4877777777665543
No 37
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=1.5e-25 Score=188.96 Aligned_cols=149 Identities=13% Similarity=0.210 Sum_probs=112.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC------CCCCC-------CCCCChhhhhh-----------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS----------- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~------~~~~~-------~~~~~i~~~i~----------- 58 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| .+..++++++.
T Consensus 27 e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~ 106 (220)
T cd03265 27 EIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGA 106 (220)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecCCccccccCcHHHHHHHHHHHcCCCHH
Confidence 3689999999999999999999999999999999876531 12333 22345555542
Q ss_pred -----HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC-
Q 026486 59 -----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR- 129 (238)
Q Consensus 59 -----~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~- 129 (238)
+.++++.+++.+.... ....++++++ ++||++++. +|+++|+||||+ ||+.++..+. ++++++.++
T Consensus 107 ~~~~~~~~~l~~~~l~~~~~~--~~~~LS~G~~qr~~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~ 181 (220)
T cd03265 107 ERRERIDELLDFVGLLEAADR--LVKTYSGGMRRRLEIARSLVH--RPEVLFLDEPTIGLDPQTRAHVW-EYIEKLKEEF 181 (220)
T ss_pred HHHHHHHHHHHHcCCHHHhhC--ChhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCccCCCHHHHHHHH-HHHHHHHHhc
Confidence 4567788888653211 1245666654 899999999 999999999999 9999999999 989988765
Q ss_pred CCeEEEEEecccccccchhHHHhhhHHHHHH
Q 026486 130 NFNVCAVYLLDSQFITDVTKFISGCMASLSA 160 (238)
Q Consensus 130 ~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~ 160 (238)
|.+++++ +|...+...+++.++....+
T Consensus 182 ~~tvi~~----tH~~~~~~~~~d~i~~l~~G 208 (220)
T cd03265 182 GMTILLT----THYMEEAEQLCDRVAIIDHG 208 (220)
T ss_pred CCEEEEE----eCCHHHHHHhCCEEEEEeCC
Confidence 7888877 48887777777755444333
No 38
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=6e-26 Score=199.22 Aligned_cols=166 Identities=14% Similarity=0.177 Sum_probs=125.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-----------CCCCC-CC-------CCChhhhhh------
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-PV-------AMDIRELIS------ 58 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-----------~~~~~-~~-------~~~i~~~i~------ 58 (238)
+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| +| ..++.+++.
T Consensus 34 ~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~ 113 (288)
T PRK13643 34 YTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNF 113 (288)
T ss_pred EEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhcccchHHHHHHhHHHHc
Confidence 689999999999999999999999999999999987531 12333 22 124555542
Q ss_pred ----------HHHHHHHcCCCC-CCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHH
Q 026486 59 ----------LEDVMEELGLGP-NGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD 124 (238)
Q Consensus 59 ----------~~~~l~~~~l~~-~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~ 124 (238)
+.++++.+++.+ .... ....++++++ ++||++++. +|+++|+||||+ ||+.+++.+. ++++
T Consensus 114 ~~~~~~~~~~~~~~l~~~~L~~~~~~~--~~~~LSgGqkqrvaiA~aL~~--~p~illLDEPt~gLD~~~~~~l~-~~l~ 188 (288)
T PRK13643 114 GIPKEKAEKIAAEKLEMVGLADEFWEK--SPFELSGGQMRRVAIAGILAM--EPEVLVLDEPTAGLDPKARIEMM-QLFE 188 (288)
T ss_pred CCCHHHHHHHHHHHHHHcCCChhhccC--CcccCCHHHHHHHHHHHHHHh--CCCEEEEECCccCCCHHHHHHHH-HHHH
Confidence 456677888853 2111 1234555543 999999999 999999999999 9999999999 8999
Q ss_pred HHHhCCCeEEEEEecccccccchhHHHhhhHHHHHHHHhhcCCeeeeecccccc
Q 026486 125 HLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV 178 (238)
Q Consensus 125 ~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~~~p~~~vlsk~dll 178 (238)
+++++|.|++++ +|.+.+...+++.+++...+.+....+.-.++...+++
T Consensus 189 ~l~~~g~til~v----tHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~ 238 (288)
T PRK13643 189 SIHQSGQTVVLV----THLMDDVADYADYVYLLEKGHIISCGTPSDVFQEVDFL 238 (288)
T ss_pred HHHHCCCEEEEE----ecCHHHHHHhCCEEEEEECCEEEEECCHHHHHcCHHHH
Confidence 997778898888 58888888889988887777777666655555444433
No 39
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.93 E-value=2.2e-25 Score=183.87 Aligned_cols=164 Identities=16% Similarity=0.213 Sum_probs=128.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC--------------CCCCCCCCCChhhhhh----------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------------ENFDYPVAMDIRELIS---------- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~--------------~~~~~~~~~~i~~~i~---------- 58 (238)
-+.+|+||||||||||+|.|+|.+.|++|++.++|.++.. ++......++++|.+.
T Consensus 28 ev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~g~ 107 (259)
T COG4559 28 EVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGR 107 (259)
T ss_pred cEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceEHHHHHHhcccccccCC
Confidence 3689999999999999999999999999999999987632 1111111234555543
Q ss_pred --------HHHHHHHcCCCCCCchhhhHHhhhhh--HHHHHHHHHhccC----CCCEEEEeCCCc-ccHHhHHHHHHHHH
Q 026486 59 --------LEDVMEELGLGPNGGLIYCMEHLEDN--LDDWLAEELDNYL----DDDYLVFDCPGQ-IELFTHVPVLRNFV 123 (238)
Q Consensus 59 --------~~~~l~~~~l~~~~~~~~~~~~~~~~--~s~~la~~l~~~~----~p~~lilDEPt~-LD~~~~~~~~~~ll 123 (238)
++++|...++....+..|. .++++ +++.+||.|+... ++++|+|||||+ ||+..+...+ ++.
T Consensus 108 ~~~e~~~i~~~ala~~d~~~la~R~y~--~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl-~la 184 (259)
T COG4559 108 EPEEDERIAAQALAATDLSGLAGRDYR--TLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTL-RLA 184 (259)
T ss_pred CchhhHHHHHHHHHHcChhhhhccchh--hcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHH-HHH
Confidence 6678888888776655544 24443 4599999999763 345999999998 9999999999 999
Q ss_pred HHHHhCCCeEEEEEecccccccchhHHHhhhHHHHHHHHhhcCCeeeeec
Q 026486 124 DHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILS 173 (238)
Q Consensus 124 ~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~~~p~~~vls 173 (238)
+++.++|..|++|. |++.-.+.|+++++++..|.+....++-.|++
T Consensus 185 R~la~~g~~V~~VL----HDLNLAA~YaDrivll~~Grv~a~g~p~~vlt 230 (259)
T COG4559 185 RQLAREGGAVLAVL----HDLNLAAQYADRIVLLHQGRVIASGSPQDVLT 230 (259)
T ss_pred HHHHhcCCcEEEEE----ccchHHHHhhheeeeeeCCeEeecCCHHHhcC
Confidence 99999888888883 77778899999999999998888777755554
No 40
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.92 E-value=3.1e-25 Score=186.13 Aligned_cols=144 Identities=18% Similarity=0.244 Sum_probs=109.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC----------CCCCC-CC------CCChhhhhh-------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-PV------AMDIRELIS------- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~----------~~~~~-~~------~~~i~~~i~------- 58 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. +.++| ++ ..++.+++.
T Consensus 29 ~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~ 108 (214)
T TIGR02673 29 EFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRG 108 (214)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHHcC
Confidence 3689999999999999999999999999999999976531 22333 22 345655543
Q ss_pred ---------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 026486 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (238)
Q Consensus 59 ---------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l 126 (238)
+.++++.+++.+.... ....++++++ ++||++++. +|+++|+||||+ ||+.++..+. ++++++
T Consensus 109 ~~~~~~~~~~~~~l~~~~l~~~~~~--~~~~LS~G~~qrl~la~al~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~~ 183 (214)
T TIGR02673 109 KKEREIQRRVGAALRQVGLEHKADA--FPEQLSGGEQQRVAIARAIVN--SPPLLLADEPTGNLDPDLSERIL-DLLKRL 183 (214)
T ss_pred CCHHHHHHHHHHHHHHcCChhhhhC--ChhhCCHHHHHHHHHHHHHhC--CCCEEEEeCCcccCCHHHHHHHH-HHHHHH
Confidence 3456777888643211 1234555543 899999999 999999999999 9999999999 999998
Q ss_pred HhCCCeEEEEEecccccccchhHHHhhhH
Q 026486 127 KSRNFNVCAVYLLDSQFITDVTKFISGCM 155 (238)
Q Consensus 127 ~~~~~tvi~v~l~d~~~~~d~~~~~~~~l 155 (238)
++++.+++++ +|...+...+++.++
T Consensus 184 ~~~~~tii~~----tH~~~~~~~~~d~i~ 208 (214)
T TIGR02673 184 NKRGTTVIVA----THDLSLVDRVAHRVI 208 (214)
T ss_pred HHcCCEEEEE----eCCHHHHHHhcCEEE
Confidence 7678888777 487777776666543
No 41
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.92 E-value=1.4e-25 Score=204.67 Aligned_cols=161 Identities=19% Similarity=0.263 Sum_probs=124.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-------CCCCC-------CCCCChhhhh-----------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-------PVAMDIRELI----------- 57 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-------~~~~~i~~~i----------- 57 (238)
-+++|+||||||||||+|+|+|+++|++|+|.++|.++.. ..++| +..+++++++
T Consensus 30 eiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~ 109 (402)
T PRK09536 30 SLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRF 109 (402)
T ss_pred CEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcccc
Confidence 3689999999999999999999999999999999987632 12233 2234454443
Q ss_pred ---------hHHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 026486 58 ---------SLEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (238)
Q Consensus 58 ---------~~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~ 125 (238)
.++++++.+++.+..... ...++++++ ++||++|+. +|+++||||||+ ||+.++.+++ +++++
T Consensus 110 ~~~~~~~~~~v~~~le~vgl~~~~~~~--~~~LSgGerQRv~IArAL~~--~P~iLLLDEPtsgLD~~~~~~l~-~lL~~ 184 (402)
T PRK09536 110 DTWTETDRAAVERAMERTGVAQFADRP--VTSLSGGERQRVLLARALAQ--ATPVLLLDEPTASLDINHQVRTL-ELVRR 184 (402)
T ss_pred cCCCHHHHHHHHHHHHHcCCchhhcCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEECCcccCCHHHHHHHH-HHHHH
Confidence 156778888887543222 234665544 999999999 999999999999 9999999999 99999
Q ss_pred HHhCCCeEEEEEecccccccchhHHHhhhHHHHHHHHhhcCCeeeee
Q 026486 126 LKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNIL 172 (238)
Q Consensus 126 l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~~~p~~~vl 172 (238)
++++|.+++++ +|.+.+...+++.+++...+.+....++-+++
T Consensus 185 l~~~g~TIIiv----sHdl~~~~~~adrii~l~~G~iv~~G~~~ev~ 227 (402)
T PRK09536 185 LVDDGKTAVAA----IHDLDLAARYCDELVLLADGRVRAAGPPADVL 227 (402)
T ss_pred HHhcCCEEEEE----ECCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 98778888777 59999999999988887777666555544443
No 42
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.92 E-value=1.4e-25 Score=202.06 Aligned_cols=156 Identities=13% Similarity=0.137 Sum_probs=121.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-----CCCCC-------CCCCChhhhhh------------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDY-------PVAMDIRELIS------------ 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-----~~~~~-------~~~~~i~~~i~------------ 58 (238)
-+++|+||||||||||+++|+|+.+|++|+|.++|.+... +.++| ++.+++++++.
T Consensus 31 e~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~ 110 (353)
T TIGR03265 31 EFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAE 110 (353)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhcCCCHHH
Confidence 3689999999999999999999999999999999977532 22333 44567777764
Q ss_pred ----HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CC
Q 026486 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RN 130 (238)
Q Consensus 59 ----~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~ 130 (238)
++++++.++|.+..... ...++++++ ++|||+|+. +|++++||||++ ||..++..+. +.++++.+ .|
T Consensus 111 ~~~~~~~~l~~l~L~~~~~~~--~~~LSgGq~QRvaLARaL~~--~P~llLLDEP~s~LD~~~r~~l~-~~L~~l~~~~~ 185 (353)
T TIGR03265 111 VAERVAELLDLVGLPGSERKY--PGQLSGGQQQRVALARALAT--SPGLLLLDEPLSALDARVREHLR-TEIRQLQRRLG 185 (353)
T ss_pred HHHHHHHHHHHcCCCchhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHhcC
Confidence 56788899997643322 234666544 999999999 999999999998 9999999999 88888866 48
Q ss_pred CeEEEEEecccccccchhHHHhhhHHHHHHHHhhcCC
Q 026486 131 FNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELP 167 (238)
Q Consensus 131 ~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~~~p 167 (238)
.|+|+| +|...+...+++.++++..+.+....+
T Consensus 186 ~tvi~v----THd~~ea~~l~d~i~vl~~G~i~~~g~ 218 (353)
T TIGR03265 186 VTTIMV----THDQEEALSMADRIVVMNHGVIEQVGT 218 (353)
T ss_pred CEEEEE----cCCHHHHHHhCCEEEEEECCEEEEEcC
Confidence 899888 588888888888776666555544333
No 43
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.92 E-value=1.5e-25 Score=190.16 Aligned_cols=149 Identities=17% Similarity=0.228 Sum_probs=111.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC--------CCCCC-C------CCCChhhhhh---------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-P------VAMDIRELIS--------- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~--------~~~~~-~------~~~~i~~~i~--------- 58 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..++| + +..++++++.
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~ 106 (232)
T cd03218 27 EIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRGLS 106 (232)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCccccccCcHHHHHHHHHHhcCCC
Confidence 3689999999999999999999999999999999876421 12333 2 2345665543
Q ss_pred -------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 026486 59 -------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (238)
Q Consensus 59 -------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (238)
++++++.+++.+..... ...++++++ ++||++++. +|+++|+||||+ ||+.+++.+. ++++++.+
T Consensus 107 ~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrl~la~al~~--~p~llllDEPt~~LD~~~~~~~~-~~l~~~~~ 181 (232)
T cd03218 107 KKEREEKLEELLEEFHITHLRKSK--ASSLSGGERRRVEIARALAT--NPKFLLLDEPFAGVDPIAVQDIQ-KIIKILKD 181 (232)
T ss_pred HHHHHHHHHHHHHHcCChhhhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEecCCcccCCHHHHHHHH-HHHHHHHH
Confidence 34567777776432111 234555543 899999999 999999999999 9999999999 89999876
Q ss_pred CCCeEEEEEecccccccchhHHHhhhHHHHHH
Q 026486 129 RNFNVCAVYLLDSQFITDVTKFISGCMASLSA 160 (238)
Q Consensus 129 ~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~ 160 (238)
.+.+++++ +|...+...+++.+++...+
T Consensus 182 ~~~tii~~----sH~~~~~~~~~d~i~~l~~G 209 (232)
T cd03218 182 RGIGVLIT----DHNVRETLSITDRAYIIYEG 209 (232)
T ss_pred CCCEEEEE----eCCHHHHHHhCCEEEEEECC
Confidence 78888777 48877777777755544333
No 44
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=2.6e-25 Score=186.15 Aligned_cols=145 Identities=14% Similarity=0.159 Sum_probs=109.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC---CCCCC-------CCCCChhhhhh--------------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---ENFDY-------PVAMDIRELIS-------------- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~---~~~~~-------~~~~~i~~~i~-------------- 58 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| ++..++++++.
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~ 106 (210)
T cd03269 27 EIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEAR 106 (210)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCCcCCcCCcHHHHHHHHHHHcCCChHHHH
Confidence 3689999999999999999999999999999999976521 22222 23346666543
Q ss_pred --HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeE
Q 026486 59 --LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNV 133 (238)
Q Consensus 59 --~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~tv 133 (238)
+.++++.+++.+.... ....++++++ ++||++++. +|+++|+|||++ ||+.++..+. ++++++++++.++
T Consensus 107 ~~~~~~l~~~~l~~~~~~--~~~~LS~G~~qrl~la~al~~--~p~~lllDEP~~~LD~~~~~~~~-~~l~~~~~~~~ti 181 (210)
T cd03269 107 RRIDEWLERLELSEYANK--RVEELSKGNQQKVQFIAAVIH--DPELLILDEPFSGLDPVNVELLK-DVIRELARAGKTV 181 (210)
T ss_pred HHHHHHHHHcCChHHHhC--cHhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCcCCCHHHHHHHH-HHHHHHHHCCCEE
Confidence 3456777787643211 1234555554 899999999 999999999999 9999999999 8899887667888
Q ss_pred EEEEecccccccchhHHHhhhHH
Q 026486 134 CAVYLLDSQFITDVTKFISGCMA 156 (238)
Q Consensus 134 i~v~l~d~~~~~d~~~~~~~~l~ 156 (238)
+++ +|...+...+++.++.
T Consensus 182 i~~----sH~~~~~~~~~d~i~~ 200 (210)
T cd03269 182 ILS----THQMELVEELCDRVLL 200 (210)
T ss_pred EEE----CCCHHHHHHhhhEEEE
Confidence 777 5877766666665543
No 45
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=1.1e-25 Score=194.43 Aligned_cols=161 Identities=14% Similarity=0.173 Sum_probs=130.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeee---cCCC-----CCCCC-------CCCCChhhhhh----------
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL---DPAA-----ENFDY-------PVAMDIRELIS---------- 58 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~---d~~~-----~~~~~-------~~~~~i~~~i~---------- 58 (238)
.++++||||||||||+++|+|+..|+.|+|.++|. |..+ +.++| ++.+|+.++|.
T Consensus 30 ~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p 109 (345)
T COG1118 30 LVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERP 109 (345)
T ss_pred EEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEEechhhcccchHHhhhhhcccccccCC
Confidence 58999999999999999999999999999999998 5433 34444 45678888875
Q ss_pred --------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 026486 59 --------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (238)
Q Consensus 59 --------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~ 127 (238)
+.++++.++|+..+.. |+. .++++++ +++||+++. +|++|+||||+. ||...+.++- .-++++.
T Consensus 110 ~~~~~r~rv~elL~lvqL~~la~r-yP~-QLSGGQrQRVALARALA~--eP~vLLLDEPf~ALDa~vr~~lr-~wLr~~~ 184 (345)
T COG1118 110 SEAEIRARVEELLRLVQLEGLADR-YPA-QLSGGQRQRVALARALAV--EPKVLLLDEPFGALDAKVRKELR-RWLRKLH 184 (345)
T ss_pred ChhhHHHHHHHHHHHhcccchhhc-Cch-hcChHHHHHHHHHHHhhc--CCCeEeecCCchhhhHHHHHHHH-HHHHHHH
Confidence 7888999999876543 332 4556654 999999999 999999999998 9999999887 7777776
Q ss_pred h-CCCeEEEEEecccccccchhHHHhhhHHHHHHHHhhcCCeeeeec
Q 026486 128 S-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILS 173 (238)
Q Consensus 128 ~-~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~~~p~~~vls 173 (238)
+ .|.++++| +|+.++..+++++++.+..|.|.--.|+..|..
T Consensus 185 ~~~~~ttvfV----THD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~ 227 (345)
T COG1118 185 DRLGVTTVFV----THDQEEALELADRVVVLNQGRIEQVGPPDEVYD 227 (345)
T ss_pred HhhCceEEEE----eCCHHHHHhhcceEEEecCCeeeeeCCHHHHhc
Confidence 5 49999899 499999999999888888887765555545543
No 46
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.92 E-value=2.1e-25 Score=196.93 Aligned_cols=156 Identities=19% Similarity=0.272 Sum_probs=121.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC------CCCCC-------CCCCChhhhhh-----------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS----------- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~------~~~~~-------~~~~~i~~~i~----------- 58 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| ++.+++.+++.
T Consensus 29 ei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~ 108 (301)
T TIGR03522 29 RIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQ 108 (301)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHcCCCHH
Confidence 4789999999999999999999999999999999987632 12333 33456666653
Q ss_pred -----HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCC
Q 026486 59 -----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN 130 (238)
Q Consensus 59 -----~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~ 130 (238)
++++++.+|+.+..... ...++++++ +.+|++++. +|+++|+||||+ ||+.+++.++ ++++++++ +
T Consensus 109 ~~~~~~~~~l~~~gl~~~~~~~--~~~LS~G~~qrv~la~al~~--~p~lliLDEPt~gLD~~~~~~l~-~~l~~~~~-~ 182 (301)
T TIGR03522 109 LLKQRVEEMIELVGLRPEQHKK--IGQLSKGYRQRVGLAQALIH--DPKVLILDEPTTGLDPNQLVEIR-NVIKNIGK-D 182 (301)
T ss_pred HHHHHHHHHHHHCCCchHhcCc--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHhcC-C
Confidence 45677788887643222 234666654 899999999 999999999999 9999999999 89999864 6
Q ss_pred CeEEEEEecccccccchhHHHhhhHHHHHHHHhhcCCe
Q 026486 131 FNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPH 168 (238)
Q Consensus 131 ~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~~~p~ 168 (238)
.+++++ +|.+.+...+++.+++...+.+....+.
T Consensus 183 ~tiii~----sH~l~~~~~~~d~i~~l~~G~i~~~g~~ 216 (301)
T TIGR03522 183 KTIILS----THIMQEVEAICDRVIIINKGKIVADKKL 216 (301)
T ss_pred CEEEEE----cCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 777666 6999999999998877766666554444
No 47
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.92 E-value=3.1e-25 Score=186.02 Aligned_cols=144 Identities=17% Similarity=0.226 Sum_probs=107.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC----------CCCCC-------CCCCChhhhhh-------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-------PVAMDIRELIS------- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~----------~~~~~-------~~~~~i~~~i~------- 58 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| .+..++++++.
T Consensus 28 ~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~ 107 (214)
T cd03292 28 EFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTG 107 (214)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHHHHcC
Confidence 3689999999999999999999999999999999876532 12333 22346665543
Q ss_pred ---------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 026486 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (238)
Q Consensus 59 ---------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l 126 (238)
+.++++.+|+.+..... ...++++++ ++||++++. +|+++|+||||+ ||+.++..+. ++++++
T Consensus 108 ~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~~~-~~l~~~ 182 (214)
T cd03292 108 VPPREIRKRVPAALELVGLSHKHRAL--PAELSGGEQQRVAIARAIVN--SPTILIADEPTGNLDPDTTWEIM-NLLKKI 182 (214)
T ss_pred CCHHHHHHHHHHHHHHcCCHHHhhCC--hhhcCHHHHHHHHHHHHHHc--CCCEEEEeCCCCcCCHHHHHHHH-HHHHHH
Confidence 34567778876432111 234555543 899999999 999999999999 9999999999 989998
Q ss_pred HhCCCeEEEEEecccccccchhHHHhhhH
Q 026486 127 KSRNFNVCAVYLLDSQFITDVTKFISGCM 155 (238)
Q Consensus 127 ~~~~~tvi~v~l~d~~~~~d~~~~~~~~l 155 (238)
+++|.+++++ +|.......+++.++
T Consensus 183 ~~~~~tiiiv----tH~~~~~~~~~d~i~ 207 (214)
T cd03292 183 NKAGTTVVVA----THAKELVDTTRHRVI 207 (214)
T ss_pred HHcCCEEEEE----eCCHHHHHHhCCEEE
Confidence 7668888777 477766666665443
No 48
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=1.8e-25 Score=188.57 Aligned_cols=145 Identities=17% Similarity=0.181 Sum_probs=109.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC--CCCCC-------CCCCChhhhhh---------------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--ENFDY-------PVAMDIRELIS--------------- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~--~~~~~-------~~~~~i~~~i~--------------- 58 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| .+..++++++.
T Consensus 31 ~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~ 110 (220)
T cd03293 31 EFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARE 110 (220)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEecccccccCCCHHHHHHHHHHHcCCCHHHHHH
Confidence 4689999999999999999999999999999999977532 22333 22345665543
Q ss_pred -HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CCCeE
Q 026486 59 -LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNV 133 (238)
Q Consensus 59 -~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~~tv 133 (238)
+.++++.+++.+..... ...++++++ ++||++++. +|+++|+||||+ ||+.++..++ ++++++.+ .+.++
T Consensus 111 ~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrl~la~al~~--~p~lllLDEPt~~LD~~~~~~~~-~~l~~~~~~~~~ti 185 (220)
T cd03293 111 RAEELLELVGLSGFENAY--PHQLSGGMRQRVALARALAV--DPDVLLLDEPFSALDALTREQLQ-EELLDIWRETGKTV 185 (220)
T ss_pred HHHHHHHHcCChhhhhCC--cccCCHHHHHHHHHHHHHHc--CCCEEEECCCCCCCCHHHHHHHH-HHHHHHHHHcCCEE
Confidence 34577788886432111 234555543 899999999 999999999999 9999999999 98988854 57888
Q ss_pred EEEEecccccccchhHHHhhhHH
Q 026486 134 CAVYLLDSQFITDVTKFISGCMA 156 (238)
Q Consensus 134 i~v~l~d~~~~~d~~~~~~~~l~ 156 (238)
+++ +|...+...+++.++.
T Consensus 186 ii~----sH~~~~~~~~~d~i~~ 204 (220)
T cd03293 186 LLV----THDIDEAVFLADRVVV 204 (220)
T ss_pred EEE----ecCHHHHHHhCCEEEE
Confidence 777 4877766677665543
No 49
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=1.7e-25 Score=182.67 Aligned_cols=160 Identities=21% Similarity=0.304 Sum_probs=126.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-------------------------------CCCCCCC-CC
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------------------------------ENFDYPV-AM 51 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------------------------------~~~~~~~-~~ 51 (238)
++++|||||+|||||+.+++.+++.++|+|+++|++... ..+||.+ ..
T Consensus 29 iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGRl 108 (252)
T COG4604 29 ITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRL 108 (252)
T ss_pred eeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHHHhhchhhheeEHHHHhhcCCCcccCCCC
Confidence 689999999999999999999999999999999988743 1123311 23
Q ss_pred ChhhhhhHHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 026486 52 DIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (238)
Q Consensus 52 ~i~~~i~~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (238)
+-.+...++++++.++|.+...+. ++.++++++ ..+|..++. +.+|++||||.+ ||.....++| ++++++.+
T Consensus 109 t~eD~~~I~~aieyl~L~~l~dry--Ld~LSGGQrQRAfIAMVlaQ--dTdyvlLDEPLNNLDmkHsv~iM-k~Lrrla~ 183 (252)
T COG4604 109 TKEDRRIINEAIEYLHLEDLSDRY--LDELSGGQRQRAFIAMVLAQ--DTDYVLLDEPLNNLDMKHSVQIM-KILRRLAD 183 (252)
T ss_pred chHHHHHHHHHHHHhcccchHHHh--HHhcccchhhhhhhheeeec--cCcEEEecCcccccchHHHHHHH-HHHHHHHH
Confidence 444444589999999998764433 467777765 788999999 999999999998 9999999999 99999986
Q ss_pred -CCCeEEEEEecccccccchhHHHhhhHHHHHHHHhhcCCeeeee
Q 026486 129 -RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNIL 172 (238)
Q Consensus 129 -~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~~~p~~~vl 172 (238)
.|+|+++| +|| +.-++.|.+.++....|++....|+-+++
T Consensus 184 el~KtiviV-lHD---INfAS~YsD~IVAlK~G~vv~~G~~~eii 224 (252)
T COG4604 184 ELGKTIVVV-LHD---INFASCYSDHIVALKNGKVVKQGSPDEII 224 (252)
T ss_pred HhCCeEEEE-Eec---ccHHHhhhhheeeecCCEEEecCCHHHhc
Confidence 59999888 455 44456677777777888887777775555
No 50
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.92 E-value=4.4e-25 Score=187.64 Aligned_cols=157 Identities=14% Similarity=0.090 Sum_probs=116.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCCC--CCCC-------CCCCChhhhhh---------------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE--NFDY-------PVAMDIRELIS--------------- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~--~~~~-------~~~~~i~~~i~--------------- 58 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.++... ...| .+..++.+++.
T Consensus 12 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~ 91 (230)
T TIGR01184 12 EFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVDRVLPDLSKSER 91 (230)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHHhcccCCCHHHH
Confidence 36899999999999999999999999999999998765321 1112 22345555542
Q ss_pred ---HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CCC
Q 026486 59 ---LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNF 131 (238)
Q Consensus 59 ---~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~~ 131 (238)
+.++++.+++...... ....++++++ +.||++++. +|+++|+||||+ ||+.++..+. ++++++.+ .|.
T Consensus 92 ~~~~~~~l~~~~l~~~~~~--~~~~LSgG~~qrv~la~al~~--~p~lllLDEPt~gLD~~~~~~l~-~~l~~~~~~~~~ 166 (230)
T TIGR01184 92 RAIVEEHIALVGLTEAADK--RPGQLSGGMKQRVAIARALSI--RPKVLLLDEPFGALDALTRGNLQ-EELMQIWEEHRV 166 (230)
T ss_pred HHHHHHHHHHcCCHHHHcC--ChhhCCHHHHHHHHHHHHHHc--CCCEEEEcCCCcCCCHHHHHHHH-HHHHHHHHhcCC
Confidence 3456777787642211 1234666544 899999999 999999999999 9999999999 88888865 478
Q ss_pred eEEEEEecccccccchhHHHhhhHHHHHHHHhhcCCe
Q 026486 132 NVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPH 168 (238)
Q Consensus 132 tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~~~p~ 168 (238)
+++++ +|...+...+++.+++...+.+....+.
T Consensus 167 tii~~----sH~~~~~~~~~d~v~~l~~G~i~~~~~~ 199 (230)
T TIGR01184 167 TVLMV----THDVDEALLLSDRVVMLTNGPAANIGQI 199 (230)
T ss_pred EEEEE----eCCHHHHHHhcCEEEEEeCCcEecccCc
Confidence 88777 5888877888887776666665544433
No 51
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.92 E-value=3.6e-25 Score=185.04 Aligned_cols=145 Identities=14% Similarity=0.189 Sum_probs=110.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-----CCCCC-------CCCCChhhhhh------------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDY-------PVAMDIRELIS------------ 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-----~~~~~-------~~~~~i~~~i~------------ 58 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| .+..++++++.
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~ 106 (208)
T cd03268 27 EIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTARENLRLLARLLGIRKKR 106 (208)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecCCCccCccCcHHHHHHHHHHhcCCcHHH
Confidence 3689999999999999999999999999999999976531 12222 23456666653
Q ss_pred HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEE
Q 026486 59 LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCA 135 (238)
Q Consensus 59 ~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~tvi~ 135 (238)
+.++++.+++....... ...++++++ ++||++++. +|+++|+||||+ ||+.++..+. ++++++++++.++++
T Consensus 107 ~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~tii~ 181 (208)
T cd03268 107 IDEVLDVVGLKDSAKKK--VKGFSLGMKQRLGIALALLG--NPDLLILDEPTNGLDPDGIKELR-ELILSLRDQGITVLI 181 (208)
T ss_pred HHHHHHHcCCHHHHhhh--HhhCCHHHHHHHHHHHHHhc--CCCEEEECCCcccCCHHHHHHHH-HHHHHHHHCCCEEEE
Confidence 45577888886532221 234555544 899999999 999999999999 9999999999 899988767888877
Q ss_pred EEecccccccchhHHHhhhHH
Q 026486 136 VYLLDSQFITDVTKFISGCMA 156 (238)
Q Consensus 136 v~l~d~~~~~d~~~~~~~~l~ 156 (238)
+ +|...+...+++.++.
T Consensus 182 ~----tH~~~~~~~~~d~v~~ 198 (208)
T cd03268 182 S----SHLLSEIQKVADRIGI 198 (208)
T ss_pred E----cCCHHHHHHhcCEEEE
Confidence 7 5877766666665443
No 52
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=2.6e-25 Score=197.83 Aligned_cols=167 Identities=15% Similarity=0.149 Sum_probs=125.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-----------------------CCCCC-CC-------CC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------------------ENFDY-PV-------AM 51 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-----------------------~~~~~-~~-------~~ 51 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| +| ..
T Consensus 53 e~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~ 132 (320)
T PRK13631 53 KIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKD 132 (320)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccccccccccccchHHHHHhcEEEEEECchhccccc
Confidence 3689999999999999999999999999999999865421 11233 22 12
Q ss_pred Chhhhhh----------------HHHHHHHcCCCC-CCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-cc
Q 026486 52 DIRELIS----------------LEDVMEELGLGP-NGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IE 111 (238)
Q Consensus 52 ~i~~~i~----------------~~~~l~~~~l~~-~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD 111 (238)
++++++. +.++++.+|+.. ..... ...++++++ ++||++++. +|+++|+||||+ ||
T Consensus 133 tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~--~~~LSgGqkqRvaiAraL~~--~p~iLLLDEPtsgLD 208 (320)
T PRK13631 133 TIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERS--PFGLSGGQKRRVAIAGILAI--QPEILIFDEPTAGLD 208 (320)
T ss_pred hHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEECCccCCC
Confidence 5555542 456778888852 21111 134555543 999999999 999999999999 99
Q ss_pred HHhHHHHHHHHHHHHHhCCCeEEEEEecccccccchhHHHhhhHHHHHHHHhhcCCeeeeecccccc
Q 026486 112 LFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV 178 (238)
Q Consensus 112 ~~~~~~~~~~ll~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~~~p~~~vlsk~dll 178 (238)
+.+++.++ +++++++++|.|++++ +|.+.....+++.+++...+.+....++-.+++..+++
T Consensus 209 ~~~~~~l~-~~L~~l~~~g~Tiiiv----tHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~~~~~ 270 (320)
T PRK13631 209 PKGEHEMM-QLILDAKANNKTVFVI----THTMEHVLEVADEVIVMDKGKILKTGTPYEIFTDQHII 270 (320)
T ss_pred HHHHHHHH-HHHHHHHHCCCEEEEE----ecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCHHHH
Confidence 99999999 9999887678898888 58888888888888888777777766665555554443
No 53
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.92 E-value=2.3e-25 Score=200.91 Aligned_cols=155 Identities=15% Similarity=0.144 Sum_probs=121.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-----------CCCCC-------CCCCChhhhhh------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-------PVAMDIRELIS------ 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-----------~~~~~-------~~~~~i~~~i~------ 58 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. +.++| ++..++++++.
T Consensus 20 ei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~TV~eNi~~~~~~~ 99 (363)
T TIGR01186 20 EIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHMTILQNTSLGPELL 99 (363)
T ss_pred CEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCCCHHHHHHHHHHHc
Confidence 3689999999999999999999999999999999987642 23343 34567877764
Q ss_pred ----------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 026486 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (238)
Q Consensus 59 ----------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~ 125 (238)
+.++++.+||....... ...++++++ ++||++|+. +|+++|+|||++ ||+.++..+. +.+.+
T Consensus 100 ~~~~~~~~~~~~~~l~~vgL~~~~~~~--p~~LSGGq~QRV~lARAL~~--~p~iLLlDEP~saLD~~~r~~l~-~~l~~ 174 (363)
T TIGR01186 100 GWPEQERKEKALELLKLVGLEEYEHRY--PDELSGGMQQRVGLARALAA--EPDILLMDEAFSALDPLIRDSMQ-DELKK 174 (363)
T ss_pred CCCHHHHHHHHHHHHHhcCCchhhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHH
Confidence 45678888886543222 234666654 899999999 999999999999 9999999999 88888
Q ss_pred HHh-CCCeEEEEEecccccccchhHHHhhhHHHHHHHHhhcC
Q 026486 126 LKS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLEL 166 (238)
Q Consensus 126 l~~-~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~~~ 166 (238)
+++ .++|+++| +|.+.+..++++.++++..+.+....
T Consensus 175 l~~~~~~Tii~v----THd~~ea~~~~drI~vl~~G~iv~~g 212 (363)
T TIGR01186 175 LQATLQKTIVFI----THDLDEAIRIGDRIVIMKAGEIVQVG 212 (363)
T ss_pred HHHhcCCEEEEE----eCCHHHHHHhCCEEEEEeCCEEEeeC
Confidence 865 48899888 48888888888877776666654333
No 54
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.92 E-value=4.8e-25 Score=185.17 Aligned_cols=161 Identities=14% Similarity=0.127 Sum_probs=132.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC---CCCCC-------CCCCChhhhhh--------------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---ENFDY-------PVAMDIRELIS-------------- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~---~~~~~-------~~~~~i~~~i~-------------- 58 (238)
-+.+++|||||||||.+|+|.|+++|++|+|.|+|.+... +.++| .+.+++.|.+.
T Consensus 29 ~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~ 108 (300)
T COG4152 29 EIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQ 108 (300)
T ss_pred eEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccChhhhccCccCcHHHHHHHHHHhcCCcHHHHH
Confidence 3679999999999999999999999999999999988754 34666 34677877664
Q ss_pred --HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeE
Q 026486 59 --LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNV 133 (238)
Q Consensus 59 --~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~tv 133 (238)
+..+|+++++..+.... .+.++.+.. +.+..++++ +|+++|||||++ |||.+.+-+- +.+.+++.+|.||
T Consensus 109 ~~~~~wLer~~i~~~~~~k--Ik~LSKGnqQKIQfisaviH--ePeLlILDEPFSGLDPVN~elLk-~~I~~lk~~GatI 183 (300)
T COG4152 109 KKLQAWLERLEIVGKKTKK--IKELSKGNQQKIQFISAVIH--EPELLILDEPFSGLDPVNVELLK-DAIFELKEEGATI 183 (300)
T ss_pred HHHHHHHHhccccccccch--HHHhhhhhhHHHHHHHHHhc--CCCEEEecCCccCCChhhHHHHH-HHHHHHHhcCCEE
Confidence 77899999998764333 345655432 666778888 999999999999 9999987766 8999998899999
Q ss_pred EEEEecccccccchhHHHhhhHHHHHHHHhhcCCeeeee
Q 026486 134 CAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNIL 172 (238)
Q Consensus 134 i~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~~~p~~~vl 172 (238)
|+. +|.|+.++..|+.+++...|...+..+..+|-
T Consensus 184 ifS----sH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir 218 (300)
T COG4152 184 IFS----SHRMEHVEELCDRLLMLKKGQTVLYGTVEDIR 218 (300)
T ss_pred EEe----cchHHHHHHHhhhhheecCCceEEeccHHHHH
Confidence 655 79999999999999999888887777765553
No 55
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=2.2e-25 Score=200.08 Aligned_cols=157 Identities=13% Similarity=0.161 Sum_probs=120.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC----------CCCCC-------CCCCChhhhhh-------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-------PVAMDIRELIS------- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~----------~~~~~-------~~~~~i~~~i~------- 58 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| .+..++++++.
T Consensus 32 ei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~ 111 (343)
T PRK11153 32 EIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAG 111 (343)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcC
Confidence 3689999999999999999999999999999999987632 23333 22356666653
Q ss_pred ---------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 026486 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (238)
Q Consensus 59 ---------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l 126 (238)
+.++++.+|+.+..... ...++++++ ++||++++. +|+++|+||||+ ||+.++..++ ++++++
T Consensus 112 ~~~~~~~~~~~~~l~~~gL~~~~~~~--~~~LSgGq~qRv~lAraL~~--~p~iLlLDEPts~LD~~~~~~l~-~~L~~l 186 (343)
T PRK11153 112 TPKAEIKARVTELLELVGLSDKADRY--PAQLSGGQKQRVAIARALAS--NPKVLLCDEATSALDPATTRSIL-ELLKDI 186 (343)
T ss_pred CCHHHHHHHHHHHHHHcCCchhhhCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHH
Confidence 34677888886542221 234666554 999999999 999999999999 9999999999 999998
Q ss_pred HhC-CCeEEEEEecccccccchhHHHhhhHHHHHHHHhhcCCe
Q 026486 127 KSR-NFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPH 168 (238)
Q Consensus 127 ~~~-~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~~~p~ 168 (238)
+++ |.+++++ +|.+.+...+++.+++...+.+....+.
T Consensus 187 ~~~~g~tiilv----tH~~~~i~~~~d~v~~l~~G~i~~~g~~ 225 (343)
T PRK11153 187 NRELGLTIVLI----THEMDVVKRICDRVAVIDAGRLVEQGTV 225 (343)
T ss_pred HHhcCCEEEEE----eCCHHHHHHhCCEEEEEECCEEEEEcCH
Confidence 764 8888877 5888888888888777666665544443
No 56
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.92 E-value=2.3e-25 Score=201.17 Aligned_cols=156 Identities=13% Similarity=0.203 Sum_probs=121.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCC--ceEEEeeecCCC-----CCCCC-------CCCCChhhhhh-----------
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVR--RTMHIVNLDPAA-----ENFDY-------PVAMDIRELIS----------- 58 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~--G~i~i~~~d~~~-----~~~~~-------~~~~~i~~~i~----------- 58 (238)
+++|+||||||||||+++|+|+.+|++ |+|.++|.++.. ..++| ++.+++++++.
T Consensus 33 ~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~ 112 (362)
T TIGR03258 33 LLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKA 112 (362)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHH
Confidence 689999999999999999999999999 999999987532 22222 44567777764
Q ss_pred -----HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC-
Q 026486 59 -----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR- 129 (238)
Q Consensus 59 -----~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~- 129 (238)
+.++++.++|.+..... ...++++++ ++|||+|+. +|++++||||++ ||+..+.++. +.+++++++
T Consensus 113 ~~~~~v~~~l~~~gL~~~~~~~--~~~LSgGq~QRvaLARAL~~--~P~llLLDEP~s~LD~~~r~~l~-~~l~~l~~~~ 187 (362)
T TIGR03258 113 DIAERVADALKLVGLGDAAAHL--PAQLSGGMQQRIAIARAIAI--EPDVLLLDEPLSALDANIRANMR-EEIAALHEEL 187 (362)
T ss_pred HHHHHHHHHHHhcCCCchhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCccccCCHHHHHHHH-HHHHHHHHhC
Confidence 56678888997653322 235666554 999999999 999999999999 9999999999 888888765
Q ss_pred -CCeEEEEEecccccccchhHHHhhhHHHHHHHHhhcCCe
Q 026486 130 -NFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPH 168 (238)
Q Consensus 130 -~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~~~p~ 168 (238)
|.|+++| +|...+...+++.+++...+.+....+.
T Consensus 188 ~g~til~v----THd~~ea~~l~dri~vl~~G~i~~~g~~ 223 (362)
T TIGR03258 188 PELTILCV----THDQDDALTLADKAGIMKDGRLAAHGEP 223 (362)
T ss_pred CCCEEEEE----eCCHHHHHHhCCEEEEEECCEEEEEcCH
Confidence 7888888 5888888888887766665555444333
No 57
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=1.6e-25 Score=196.39 Aligned_cols=160 Identities=19% Similarity=0.200 Sum_probs=121.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC---------CCCCC-CC-------CCChhhhhh--------
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------ENFDY-PV-------AMDIRELIS-------- 58 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~---------~~~~~-~~-------~~~i~~~i~-------- 58 (238)
+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| +| ..++++++.
T Consensus 35 ~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~ 114 (287)
T PRK13637 35 FVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGL 114 (287)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHHCCC
Confidence 689999999999999999999999999999999977532 22344 22 235666553
Q ss_pred --------HHHHHHHcCCC--CCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 026486 59 --------LEDVMEELGLG--PNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (238)
Q Consensus 59 --------~~~~l~~~~l~--~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~ 125 (238)
+.++++.+|+. ...... ...++++++ ++||++++. +|+++|+||||+ ||+.++..++ +++++
T Consensus 115 ~~~~~~~~~~~~l~~~gL~~~~~~~~~--~~~LSgGq~qrv~iAraL~~--~P~llllDEPt~gLD~~~~~~l~-~~l~~ 189 (287)
T PRK13637 115 SEEEIENRVKRAMNIVGLDYEDYKDKS--PFELSGGQKRRVAIAGVVAM--EPKILILDEPTAGLDPKGRDEIL-NKIKE 189 (287)
T ss_pred CHHHHHHHHHHHHHHcCCCchhhccCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEECCccCCCHHHHHHHH-HHHHH
Confidence 45678888996 222111 234555544 999999999 999999999999 9999999999 99999
Q ss_pred HHhC-CCeEEEEEecccccccchhHHHhhhHHHHHHHHhhcCCeeeee
Q 026486 126 LKSR-NFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNIL 172 (238)
Q Consensus 126 l~~~-~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~~~p~~~vl 172 (238)
++++ |.|++++ +|.+.+...+++++++...+.+....+.-.++
T Consensus 190 l~~~~g~tvi~v----tHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13637 190 LHKEYNMTIILV----SHSMEDVAKLADRIIVMNKGKCELQGTPREVF 233 (287)
T ss_pred HHHhcCCEEEEE----eCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9764 8899888 48888888888887776666665554443333
No 58
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.92 E-value=2.4e-25 Score=201.61 Aligned_cols=152 Identities=14% Similarity=0.104 Sum_probs=117.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-----CCCCC-------CCCCChhhhhh------------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDY-------PVAMDIRELIS------------ 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-----~~~~~-------~~~~~i~~~i~------------ 58 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| ++..++++++.
T Consensus 30 e~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~ 109 (369)
T PRK11000 30 EFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEE 109 (369)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhcCCCHHH
Confidence 3689999999999999999999999999999999976532 22333 33457777664
Q ss_pred ----HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CC
Q 026486 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RN 130 (238)
Q Consensus 59 ----~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~ 130 (238)
+.++++.+++....... ...++++++ ++||++|+. +|+++|||||++ ||+.++..+. ++++++.+ .|
T Consensus 110 ~~~~~~~~l~~lgL~~~~~~~--~~~LSgGq~QRvaLAraL~~--~P~lLLLDEPts~LD~~~~~~l~-~~L~~l~~~~g 184 (369)
T PRK11000 110 INQRVNQVAEVLQLAHLLDRK--PKALSGGQRQRVAIGRTLVA--EPSVFLLDEPLSNLDAALRVQMR-IEISRLHKRLG 184 (369)
T ss_pred HHHHHHHHHHHcCChhhhcCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHHhC
Confidence 45677888886532222 234666654 999999999 999999999999 9999999999 88888875 48
Q ss_pred CeEEEEEecccccccchhHHHhhhHHHHHHHHh
Q 026486 131 FNVCAVYLLDSQFITDVTKFISGCMASLSAMVQ 163 (238)
Q Consensus 131 ~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~ 163 (238)
.++|+| +|...+...+++.+++...+.+.
T Consensus 185 ~tvI~v----THd~~~~~~~~d~i~vl~~G~i~ 213 (369)
T PRK11000 185 RTMIYV----THDQVEAMTLADKIVVLDAGRVA 213 (369)
T ss_pred CEEEEE----eCCHHHHHHhCCEEEEEECCEEE
Confidence 888888 48888777777776665555443
No 59
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=2.8e-25 Score=188.74 Aligned_cols=149 Identities=14% Similarity=0.180 Sum_probs=111.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC----------CCCCC-------CCCCChhhhhh-------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-------PVAMDIRELIS------- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~----------~~~~~-------~~~~~i~~~i~------- 58 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| .+..++.+++.
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~ 111 (233)
T cd03258 32 EIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAG 111 (233)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHcC
Confidence 3689999999999999999999999999999999987531 22333 22346666543
Q ss_pred ---------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 026486 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (238)
Q Consensus 59 ---------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l 126 (238)
+.++++.+++....... ...++++++ ++||++++. +|+++|+|||++ ||+.++..+. ++++++
T Consensus 112 ~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~la~al~~--~p~lllLDEP~~~LD~~~~~~l~-~~l~~~ 186 (233)
T cd03258 112 VPKAEIEERVLELLELVGLEDKADAY--PAQLSGGQKQRVGIARALAN--NPKVLLCDEATSALDPETTQSIL-ALLRDI 186 (233)
T ss_pred CCHHHHHHHHHHHHHHCCChhhhhcC--hhhCCHHHHHHHHHHHHHhc--CCCEEEecCCCCcCCHHHHHHHH-HHHHHH
Confidence 35567788886432211 234555543 899999999 999999999999 9999999999 999988
Q ss_pred HhC-CCeEEEEEecccccccchhHHHhhhHHHHHH
Q 026486 127 KSR-NFNVCAVYLLDSQFITDVTKFISGCMASLSA 160 (238)
Q Consensus 127 ~~~-~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~ 160 (238)
+++ |.+++++ +|...+...+++.++....+
T Consensus 187 ~~~~~~tvii~----sH~~~~~~~~~d~i~~l~~G 217 (233)
T cd03258 187 NRELGLTIVLI----THEMEVVKRICDRVAVMEKG 217 (233)
T ss_pred HHHcCCEEEEE----eCCHHHHHHhCCEEEEEECC
Confidence 764 8888877 48777666777655443333
No 60
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=2.8e-25 Score=199.90 Aligned_cols=153 Identities=14% Similarity=0.138 Sum_probs=119.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-----CCCCC-------CCCCChhhhhh------------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDY-------PVAMDIRELIS------------ 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-----~~~~~-------~~~~~i~~~i~------------ 58 (238)
-+++|+||||||||||+++|+|+.+|++|+|.++|.++.. +.++| ++.+++.+++.
T Consensus 33 e~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~ 112 (351)
T PRK11432 33 TMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEE 112 (351)
T ss_pred CEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHcCCCHHH
Confidence 3689999999999999999999999999999999976532 22332 45667777764
Q ss_pred ----HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CC
Q 026486 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RN 130 (238)
Q Consensus 59 ----~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~ 130 (238)
++++++.+++.+..... ...++++++ ++|||+++. +|++++||||++ ||+.++.++. +.++++.+ .|
T Consensus 113 ~~~~v~~~l~~~gl~~~~~r~--~~~LSgGq~QRVaLARaL~~--~P~lLLLDEP~s~LD~~~r~~l~-~~l~~l~~~~g 187 (351)
T PRK11432 113 RKQRVKEALELVDLAGFEDRY--VDQISGGQQQRVALARALIL--KPKVLLFDEPLSNLDANLRRSMR-EKIRELQQQFN 187 (351)
T ss_pred HHHHHHHHHHHcCCchhhcCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHhcC
Confidence 45677888887643222 234555543 999999999 999999999998 9999999998 88888875 48
Q ss_pred CeEEEEEecccccccchhHHHhhhHHHHHHHHhh
Q 026486 131 FNVCAVYLLDSQFITDVTKFISGCMASLSAMVQL 164 (238)
Q Consensus 131 ~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~ 164 (238)
.|+++| +|...+...+++.++++..+.+..
T Consensus 188 ~tii~v----THd~~e~~~laD~i~vm~~G~i~~ 217 (351)
T PRK11432 188 ITSLYV----THDQSEAFAVSDTVIVMNKGKIMQ 217 (351)
T ss_pred CEEEEE----cCCHHHHHHhCCEEEEEECCEEEE
Confidence 899888 588888888888776655555443
No 61
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=4.2e-25 Score=194.04 Aligned_cols=162 Identities=18% Similarity=0.164 Sum_probs=122.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-----------CCCCC-CC-------CCChhhhhh-----
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-PV-------AMDIRELIS----- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-----------~~~~~-~~-------~~~i~~~i~----- 58 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| +| ..++++++.
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~ 113 (290)
T PRK13634 34 SYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMN 113 (290)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhhhhhHHHHHHHHHHH
Confidence 3689999999999999999999999999999999986531 22344 22 235555542
Q ss_pred -----------HHHHHHHcCCCC-CCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHH
Q 026486 59 -----------LEDVMEELGLGP-NGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV 123 (238)
Q Consensus 59 -----------~~~~l~~~~l~~-~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll 123 (238)
++++++.++|.+ ..... ...++++++ ++||++++. +|+++|+||||+ ||+.++..+. +++
T Consensus 114 ~~~~~~~~~~~~~~~l~~~gL~~~~~~~~--~~~LSgGq~qrv~lAraL~~--~P~llllDEPt~~LD~~~~~~l~-~~L 188 (290)
T PRK13634 114 FGVSEEDAKQKAREMIELVGLPEELLARS--PFELSGGQMRRVAIAGVLAM--EPEVLVLDEPTAGLDPKGRKEMM-EMF 188 (290)
T ss_pred cCCCHHHHHHHHHHHHHHCCCChhhhhCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEECCcccCCHHHHHHHH-HHH
Confidence 456778888863 21111 134555543 999999999 999999999999 9999999999 999
Q ss_pred HHHHh-CCCeEEEEEecccccccchhHHHhhhHHHHHHHHhhcCCeeeeec
Q 026486 124 DHLKS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILS 173 (238)
Q Consensus 124 ~~l~~-~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~~~p~~~vls 173 (238)
+++++ .|.|++++ +|.+.+...+++.+++...+.+....+.-.+++
T Consensus 189 ~~l~~~~g~tviii----tHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 235 (290)
T PRK13634 189 YKLHKEKGLTTVLV----THSMEDAARYADQIVVMHKGTVFLQGTPREIFA 235 (290)
T ss_pred HHHHHhcCCEEEEE----eCCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 99976 48899888 588888888888887777776655544434333
No 62
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.92 E-value=5.8e-25 Score=184.22 Aligned_cols=144 Identities=19% Similarity=0.249 Sum_probs=108.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC---------CCCCC-C------CCCChhhhhh--------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------ENFDY-P------VAMDIRELIS-------- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~---------~~~~~-~------~~~~i~~~i~-------- 58 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..++| + +..++.+++.
T Consensus 27 ~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~ 106 (213)
T cd03262 27 EVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKG 106 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceEEecccccCCCCcHHHHHHhHHHHhcC
Confidence 3689999999999999999999999999999999976521 22333 2 2345555542
Q ss_pred ---------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 026486 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (238)
Q Consensus 59 ---------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l 126 (238)
+.++++.+|+.+..... ...++++++ ++||++++. +|+++|+|||++ ||+.++..+. ++++++
T Consensus 107 ~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~la~al~~--~p~llllDEP~~~LD~~~~~~l~-~~l~~~ 181 (213)
T cd03262 107 MSKAEAEERALELLEKVGLADKADAY--PAQLSGGQQQRVAIARALAM--NPKVMLFDEPTSALDPELVGEVL-DVMKDL 181 (213)
T ss_pred CCHHHHHHHHHHHHHHcCCHhHhhhC--ccccCHHHHHHHHHHHHHhc--CCCEEEEeCCccCCCHHHHHHHH-HHHHHH
Confidence 34567777876432111 234555543 899999999 999999999999 9999999999 999998
Q ss_pred HhCCCeEEEEEecccccccchhHHHhhhH
Q 026486 127 KSRNFNVCAVYLLDSQFITDVTKFISGCM 155 (238)
Q Consensus 127 ~~~~~tvi~v~l~d~~~~~d~~~~~~~~l 155 (238)
++.|.++|++ +|...+...+++.++
T Consensus 182 ~~~~~tvi~~----sh~~~~~~~~~d~i~ 206 (213)
T cd03262 182 AEEGMTMVVV----THEMGFAREVADRVI 206 (213)
T ss_pred HHcCCEEEEE----eCCHHHHHHhCCEEE
Confidence 7668888777 477777666666443
No 63
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=2.7e-25 Score=193.76 Aligned_cols=156 Identities=16% Similarity=0.172 Sum_probs=119.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-------CCCCC-CC-------CCChhhhhh---------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-------AMDIRELIS--------- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~-------~~~i~~~i~--------- 58 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..++| +| ..++.+++.
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~ 111 (274)
T PRK13647 32 SKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLD 111 (274)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHcCCC
Confidence 3689999999999999999999999999999999977532 22343 22 225555543
Q ss_pred -------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 026486 59 -------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (238)
Q Consensus 59 -------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (238)
+.++++.+|+.+..... ...++++++ ++||++++. +|+++|+||||+ ||+.++..++ ++++++++
T Consensus 112 ~~~~~~~~~~~l~~~~L~~~~~~~--~~~LSgG~~qrv~laraL~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~ 186 (274)
T PRK13647 112 KDEVERRVEEALKAVRMWDFRDKP--PYHLSYGQKKRVAIAGVLAM--DPDVIVLDEPMAYLDPRGQETLM-EILDRLHN 186 (274)
T ss_pred HHHHHHHHHHHHHHCCCHHHhcCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEECCCcCCCHHHHHHHH-HHHHHHHH
Confidence 45677788886432221 234555543 999999999 999999999999 9999999999 99999876
Q ss_pred CCCeEEEEEecccccccchhHHHhhhHHHHHHHHhhcCC
Q 026486 129 RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELP 167 (238)
Q Consensus 129 ~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~~~p 167 (238)
+|.|++++ +|.+.....+++.+++...+.+....+
T Consensus 187 ~g~tili~----tH~~~~~~~~~d~i~~l~~G~i~~~g~ 221 (274)
T PRK13647 187 QGKTVIVA----THDVDLAAEWADQVIVLKEGRVLAEGD 221 (274)
T ss_pred CCCEEEEE----eCCHHHHHHhCCEEEEEECCEEEEECC
Confidence 68898888 588888888888877766666554444
No 64
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.92 E-value=5.5e-25 Score=184.19 Aligned_cols=144 Identities=19% Similarity=0.217 Sum_probs=108.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-------CCCCC-C-------CCCChhhhhh---------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-P-------VAMDIRELIS--------- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~-------~~~~i~~~i~--------- 58 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| + +..++++++.
T Consensus 28 ~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~~~~ 107 (211)
T cd03225 28 EFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLP 107 (211)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCcHHHHHHHHHHHcCCC
Confidence 4689999999999999999999999999999999976531 22333 1 1235555542
Q ss_pred -------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 026486 59 -------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (238)
Q Consensus 59 -------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (238)
+.++++.+++.+..... ...++++++ ++||++++. +|+++|+||||+ ||+.++..++ ++++++++
T Consensus 108 ~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~~~-~~l~~~~~ 182 (211)
T cd03225 108 EEEIEERVEEALELVGLEGLRDRS--PFTLSGGQKQRVAIAGVLAM--DPDILLLDEPTAGLDPAGRRELL-ELLKKLKA 182 (211)
T ss_pred HHHHHHHHHHHHHHcCcHhhhcCC--cccCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHHH
Confidence 34577778886432111 234555543 899999999 999999999999 9999999999 88988876
Q ss_pred CCCeEEEEEecccccccchhHHHhhhH
Q 026486 129 RNFNVCAVYLLDSQFITDVTKFISGCM 155 (238)
Q Consensus 129 ~~~tvi~v~l~d~~~~~d~~~~~~~~l 155 (238)
+|.+++++ +|...+...+++.++
T Consensus 183 ~~~tvi~~----sH~~~~~~~~~d~i~ 205 (211)
T cd03225 183 EGKTIIIV----THDLDLLLELADRVI 205 (211)
T ss_pred cCCEEEEE----eCCHHHHHHhCCEEE
Confidence 68888777 487776666666443
No 65
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=3.6e-25 Score=188.98 Aligned_cols=145 Identities=14% Similarity=0.160 Sum_probs=107.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-----CCCCC-------CCCCChhhhhh------------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDY-------PVAMDIRELIS------------ 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-----~~~~~-------~~~~~i~~~i~------------ 58 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| .+..++.+++.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~ 108 (239)
T cd03296 29 ELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERP 108 (239)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEecCCcccCCCCHHHHHhhhhhhccccccC
Confidence 3689999999999999999999999999999999976431 22333 12345555432
Q ss_pred --------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 026486 59 --------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (238)
Q Consensus 59 --------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~ 127 (238)
+.++++.+++.+..... ...++++++ ++||++++. +|+++|+||||+ ||+.++..+. +++++++
T Consensus 109 ~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrl~la~al~~--~p~llllDEP~~~LD~~~~~~l~-~~l~~~~ 183 (239)
T cd03296 109 PEAEIRAKVHELLKLVQLDWLADRY--PAQLSGGQRQRVALARALAV--EPKVLLLDEPFGALDAKVRKELR-RWLRRLH 183 (239)
T ss_pred CHHHHHHHHHHHHHHcCChhhhhcC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHH
Confidence 24567777876432111 234555543 899999999 999999999999 9999999999 9999987
Q ss_pred hC-CCeEEEEEecccccccchhHHHhhhHH
Q 026486 128 SR-NFNVCAVYLLDSQFITDVTKFISGCMA 156 (238)
Q Consensus 128 ~~-~~tvi~v~l~d~~~~~d~~~~~~~~l~ 156 (238)
++ |.++|++ +|...+...+++.+++
T Consensus 184 ~~~~~tvii~----sH~~~~~~~~~d~i~~ 209 (239)
T cd03296 184 DELHVTTVFV----THDQEEALEVADRVVV 209 (239)
T ss_pred HHcCCEEEEE----eCCHHHHHHhCCEEEE
Confidence 64 7888877 4777666666664443
No 66
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.92 E-value=7e-25 Score=185.75 Aligned_cols=145 Identities=17% Similarity=0.085 Sum_probs=109.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC--CCCCCCCCCChhhhhh----------------HHHHHH
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--ENFDYPVAMDIRELIS----------------LEDVME 64 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~--~~~~~~~~~~i~~~i~----------------~~~~l~ 64 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ....+.+..++++++. +.++++
T Consensus 49 e~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~ 128 (224)
T cd03220 49 ERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGGFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIE 128 (224)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhhcccccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3689999999999999999999999999999999976532 2233445566666543 344566
Q ss_pred HcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEEeccc
Q 026486 65 ELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDS 141 (238)
Q Consensus 65 ~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~tvi~v~l~d~ 141 (238)
.+++.+..... ...++++++ ++||++++. +|+++|+|||++ ||+.+++.+. ++++++++++.++|++ +
T Consensus 129 ~~~l~~~~~~~--~~~LSgG~~qrv~laral~~--~p~llllDEP~~gLD~~~~~~~~-~~l~~~~~~~~tiii~----s 199 (224)
T cd03220 129 FSELGDFIDLP--VKTYSSGMKARLAFAIATAL--EPDILLIDEVLAVGDAAFQEKCQ-RRLRELLKQGKTVILV----S 199 (224)
T ss_pred HcCChhhhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHhCCCEEEEE----e
Confidence 77776532221 234555544 899999999 999999999999 9999999999 8888887667888777 4
Q ss_pred ccccchhHHHhhhHH
Q 026486 142 QFITDVTKFISGCMA 156 (238)
Q Consensus 142 ~~~~d~~~~~~~~l~ 156 (238)
|...+...+++.+++
T Consensus 200 H~~~~~~~~~d~i~~ 214 (224)
T cd03220 200 HDPSSIKRLCDRALV 214 (224)
T ss_pred CCHHHHHHhCCEEEE
Confidence 877766666665443
No 67
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.92 E-value=3.7e-25 Score=199.29 Aligned_cols=156 Identities=14% Similarity=0.174 Sum_probs=119.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-----CCCCC-------CCCCChhhhhh-------------
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDY-------PVAMDIRELIS------------- 58 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-----~~~~~-------~~~~~i~~~i~------------- 58 (238)
+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| ++.+++.+++.
T Consensus 30 ~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~ 109 (353)
T PRK10851 30 MVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPN 109 (353)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCC
Confidence 689999999999999999999999999999999987532 22333 33455555543
Q ss_pred -------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 026486 59 -------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (238)
Q Consensus 59 -------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (238)
+.++++.+++....... ...++++++ ++||++|+. +|+++++|||++ ||+.++..+. +.++++.+
T Consensus 110 ~~~~~~~~~~~l~~~~L~~~~~~~--~~~LSgGq~QRvalArAL~~--~P~llLLDEP~s~LD~~~r~~l~-~~L~~l~~ 184 (353)
T PRK10851 110 AAAIKAKVTQLLEMVQLAHLADRY--PAQLSGGQKQRVALARALAV--EPQILLLDEPFGALDAQVRKELR-RWLRQLHE 184 (353)
T ss_pred HHHHHHHHHHHHHHcCCchhhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH-HHHHHHHH
Confidence 44578888886543222 234656544 999999999 999999999998 9999999999 88888876
Q ss_pred C-CCeEEEEEecccccccchhHHHhhhHHHHHHHHhhcCCe
Q 026486 129 R-NFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPH 168 (238)
Q Consensus 129 ~-~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~~~p~ 168 (238)
+ |.|+++| +|...+...+++.++++..+.+....++
T Consensus 185 ~~g~tii~v----THd~~ea~~~~Dri~vl~~G~i~~~g~~ 221 (353)
T PRK10851 185 ELKFTSVFV----THDQEEAMEVADRVVVMSQGNIEQAGTP 221 (353)
T ss_pred hcCCEEEEE----eCCHHHHHHhCCEEEEEECCEEEEEcCH
Confidence 4 8898888 4888888888887766666655444333
No 68
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.92 E-value=4.7e-25 Score=184.89 Aligned_cols=143 Identities=15% Similarity=0.125 Sum_probs=106.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-----CCCCC-C------CCCChhhhhh------------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDY-P------VAMDIRELIS------------ 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-----~~~~~-~------~~~~i~~~i~------------ 58 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| + +..++++++.
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~ 106 (213)
T cd03301 27 EFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDE 106 (213)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecChhhccCCCHHHHHHHHHHhcCCCHHH
Confidence 3689999999999999999999999999999999876532 12333 2 2346665553
Q ss_pred ----HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CC
Q 026486 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RN 130 (238)
Q Consensus 59 ----~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~ 130 (238)
+.++++.+|+.+..... ...++++++ +++|++++. +|+++|+||||+ ||+.+++.++ ++++++++ .|
T Consensus 107 ~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qr~~laral~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~ 181 (213)
T cd03301 107 IDERVREVAELLQIEHLLDRK--PKQLSGGQRQRVALGRAIVR--EPKVFLMDEPLSNLDAKLRVQMR-AELKRLQQRLG 181 (213)
T ss_pred HHHHHHHHHHHcCCHHHHhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHHcC
Confidence 34567778876432111 234555543 899999999 999999999999 9999999999 99999875 48
Q ss_pred CeEEEEEecccccccchhHHHhhh
Q 026486 131 FNVCAVYLLDSQFITDVTKFISGC 154 (238)
Q Consensus 131 ~tvi~v~l~d~~~~~d~~~~~~~~ 154 (238)
.+++++ +|...+...+++.+
T Consensus 182 ~tvi~~----sH~~~~~~~~~d~i 201 (213)
T cd03301 182 TTTIYV----THDQVEAMTMADRI 201 (213)
T ss_pred CEEEEE----eCCHHHHHHhcCeE
Confidence 888877 47776656665544
No 69
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.92 E-value=1.4e-24 Score=176.36 Aligned_cols=133 Identities=17% Similarity=0.244 Sum_probs=106.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC---CCCCC--------CC------CCChhhhhh--------
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---ENFDY--------PV------AMDIRELIS-------- 58 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~---~~~~~--------~~------~~~i~~~i~-------- 58 (238)
.+.++||+|||||||+|.|++..+|++|+|.++|.|... ..++| +| +.++.|++.
T Consensus 30 f~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~ 109 (223)
T COG2884 30 FVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGK 109 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhhhhccCC
Confidence 578999999999999999999999999999999998753 23333 23 456778775
Q ss_pred --------HHHHHHHcCCCCCCchhhhHHhhhhh--HHHHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 026486 59 --------LEDVMEELGLGPNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (238)
Q Consensus 59 --------~~~~l~~~~l~~~~~~~~~~~~~~~~--~s~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~ 127 (238)
+.++++.+||........ ..++++ ++++||||+.. +|++||.||||. |||....+++ +++.+++
T Consensus 110 ~~~~i~~rV~~~L~~VgL~~k~~~lP--~~LSGGEQQRvaIARAiV~--~P~vLlADEPTGNLDp~~s~~im-~lfeein 184 (223)
T COG2884 110 PPREIRRRVSEVLDLVGLKHKARALP--SQLSGGEQQRVAIARAIVN--QPAVLLADEPTGNLDPDLSWEIM-RLFEEIN 184 (223)
T ss_pred CHHHHHHHHHHHHHHhccchhhhcCc--cccCchHHHHHHHHHHHcc--CCCeEeecCCCCCCChHHHHHHH-HHHHHHh
Confidence 788999999987532221 123332 44999999999 999999999997 9999999999 9999999
Q ss_pred hCCCeEEEEEecccc
Q 026486 128 SRNFNVCAVYLLDSQ 142 (238)
Q Consensus 128 ~~~~tvi~v~l~d~~ 142 (238)
+.|.||++.+ ||.+
T Consensus 185 r~GtTVl~AT-Hd~~ 198 (223)
T COG2884 185 RLGTTVLMAT-HDLE 198 (223)
T ss_pred hcCcEEEEEe-ccHH
Confidence 9999998874 4433
No 70
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=2.2e-25 Score=195.38 Aligned_cols=162 Identities=14% Similarity=0.180 Sum_probs=121.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-----------CCCCC-CCC-------CChhhhhh-----
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-PVA-------MDIRELIS----- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-----------~~~~~-~~~-------~~i~~~i~----- 58 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| +|+ .++.+++.
T Consensus 34 e~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~ 113 (286)
T PRK13646 34 KYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKN 113 (286)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhheEEEecChHhccchhhHHHHHHhhHHH
Confidence 3689999999999999999999999999999999977531 13444 221 14555543
Q ss_pred -----------HHHHHHHcCCC-CCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHH
Q 026486 59 -----------LEDVMEELGLG-PNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV 123 (238)
Q Consensus 59 -----------~~~~l~~~~l~-~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll 123 (238)
+.++++.+|+. +..... ...++++++ ++||++++. +|+++|+|||++ ||+.++..+. +++
T Consensus 114 ~~~~~~~~~~~~~~~l~~~gL~~~~~~~~--~~~LSgGq~qrv~laraL~~--~p~illlDEPt~~LD~~~~~~l~-~~l 188 (286)
T PRK13646 114 FKMNLDEVKNYAHRLLMDLGFSRDVMSQS--PFQMSGGQMRKIAIVSILAM--NPDIIVLDEPTAGLDPQSKRQVM-RLL 188 (286)
T ss_pred cCCCHHHHHHHHHHHHHHcCCChhhhhCC--cccCCHHHHHHHHHHHHHHh--CCCEEEEECCcccCCHHHHHHHH-HHH
Confidence 45677788885 221111 234555543 999999999 999999999999 9999999999 999
Q ss_pred HHHHh-CCCeEEEEEecccccccchhHHHhhhHHHHHHHHhhcCCeeeeec
Q 026486 124 DHLKS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILS 173 (238)
Q Consensus 124 ~~l~~-~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~~~p~~~vls 173 (238)
+++++ .|.|++++ +|.+.+...+++.+++...+.+....+.-++++
T Consensus 189 ~~l~~~~g~tvl~v----tH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 235 (286)
T PRK13646 189 KSLQTDENKTIILV----SHDMNEVARYADEVIVMKEGSIVSQTSPKELFK 235 (286)
T ss_pred HHHHHhCCCEEEEE----ecCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99875 58899888 588888888888777776666655544434443
No 71
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.92 E-value=3.9e-25 Score=200.41 Aligned_cols=156 Identities=12% Similarity=0.090 Sum_probs=120.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-----CCCC-------CCCCCChhhhhh-------------
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFD-------YPVAMDIRELIS------------- 58 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-----~~~~-------~~~~~~i~~~i~------------- 58 (238)
+++|+||||||||||+++|+|+++|++|+|.++|.+... ..++ +++.+++.+++.
T Consensus 42 ~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~ 121 (375)
T PRK09452 42 FLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEI 121 (375)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhcCCCHHHH
Confidence 689999999999999999999999999999999987532 2233 245667777764
Q ss_pred ---HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CCC
Q 026486 59 ---LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNF 131 (238)
Q Consensus 59 ---~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~~ 131 (238)
+.++++.+++.+..... ...++++++ ++|||+|+. +|++++||||++ ||..++..+. +.++++.+ .|.
T Consensus 122 ~~~~~~~l~~~~l~~~~~~~--p~~LSgGq~QRVaLARaL~~--~P~llLLDEP~s~LD~~~r~~l~-~~L~~l~~~~g~ 196 (375)
T PRK09452 122 TPRVMEALRMVQLEEFAQRK--PHQLSGGQQQRVAIARAVVN--KPKVLLLDESLSALDYKLRKQMQ-NELKALQRKLGI 196 (375)
T ss_pred HHHHHHHHHHcCCchhhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCcCCHHHHHHHH-HHHHHHHHhcCC
Confidence 45677888887643222 234655544 999999999 999999999998 9999999988 88888876 488
Q ss_pred eEEEEEecccccccchhHHHhhhHHHHHHHHhhcCCe
Q 026486 132 NVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPH 168 (238)
Q Consensus 132 tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~~~p~ 168 (238)
++|+| +|...+...+++.++++..+.+....++
T Consensus 197 tiI~v----THd~~ea~~laDri~vl~~G~i~~~g~~ 229 (375)
T PRK09452 197 TFVFV----THDQEEALTMSDRIVVMRDGRIEQDGTP 229 (375)
T ss_pred EEEEE----eCCHHHHHHhCCEEEEEECCEEEEEcCH
Confidence 99888 4888887788887776666665444333
No 72
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.92 E-value=5.5e-25 Score=185.46 Aligned_cols=150 Identities=15% Similarity=0.170 Sum_probs=108.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC--------CCCCC-C------CCCChhhhhh---------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-P------VAMDIRELIS--------- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~--------~~~~~-~------~~~~i~~~i~--------- 58 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| + +..++++++.
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~ 106 (222)
T cd03224 27 EIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARRRA 106 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcHHHHHHHHhhhcCch
Confidence 3689999999999999999999999999999999976531 22444 2 2346666553
Q ss_pred -----HHHHHHHc-CCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC
Q 026486 59 -----LEDVMEEL-GLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR 129 (238)
Q Consensus 59 -----~~~~l~~~-~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~ 129 (238)
+.++++.+ ++..... .....++++++ +.||++++. +|+++++||||+ ||+.++..++ ++++++++.
T Consensus 107 ~~~~~~~~~l~~~~~l~~~~~--~~~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~ 181 (222)
T cd03224 107 KRKARLERVYELFPRLKERRK--QLAGTLSGGEQQMLAIARALMS--RPKLLLLDEPSEGLAPKIVEEIF-EAIRELRDE 181 (222)
T ss_pred hHHHHHHHHHHHHHhhhhhhh--CchhhCCHHHHHHHHHHHHHhc--CCCEEEECCCcccCCHHHHHHHH-HHHHHHHHC
Confidence 23344555 3432211 11234555543 899999999 999999999999 9999999999 899988767
Q ss_pred CCeEEEEEecccccccchhHHHhhhHHHHHHH
Q 026486 130 NFNVCAVYLLDSQFITDVTKFISGCMASLSAM 161 (238)
Q Consensus 130 ~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~ 161 (238)
+.+++++ +|...+...+++.++....+.
T Consensus 182 ~~tiii~----sH~~~~~~~~~d~i~~l~~G~ 209 (222)
T cd03224 182 GVTILLV----EQNARFALEIADRAYVLERGR 209 (222)
T ss_pred CCEEEEE----eCCHHHHHHhccEEEEeeCCe
Confidence 7888777 487777777777555444433
No 73
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=6.5e-25 Score=183.86 Aligned_cols=145 Identities=19% Similarity=0.230 Sum_probs=108.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-----CCCCC-------CCCCChhhhhh------------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDY-------PVAMDIRELIS------------ 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-----~~~~~-------~~~~~i~~~i~------------ 58 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| .+..++++++.
T Consensus 25 e~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~ 104 (211)
T cd03298 25 EITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAE 104 (211)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhcccccccCccHH
Confidence 3689999999999999999999999999999999976532 12233 22345555542
Q ss_pred ----HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CC
Q 026486 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RN 130 (238)
Q Consensus 59 ----~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~ 130 (238)
+.++++.+++.+..... ...++++++ +.||++++. +|+++|+|||++ ||+.++..++ ++++++++ .+
T Consensus 105 ~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~ia~al~~--~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~~~~ 179 (211)
T cd03298 105 DRQAIEVALARVGLAGLEKRL--PGELSGGERQRVALARVLVR--DKPVLLLDEPFAALDPALRAEML-DLVLDLHAETK 179 (211)
T ss_pred HHHHHHHHHHHcCCHHHHhCC--cccCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHhcC
Confidence 45567788886432111 134555543 899999999 999999999999 9999999999 88998865 48
Q ss_pred CeEEEEEecccccccchhHHHhhhHH
Q 026486 131 FNVCAVYLLDSQFITDVTKFISGCMA 156 (238)
Q Consensus 131 ~tvi~v~l~d~~~~~d~~~~~~~~l~ 156 (238)
.+++++ +|...+...+++.++.
T Consensus 180 ~tii~~----sH~~~~~~~~~d~i~~ 201 (211)
T cd03298 180 MTVLMV----THQPEDAKRLAQRVVF 201 (211)
T ss_pred CEEEEE----ecCHHHHHhhhCEEEE
Confidence 888877 4877777777665543
No 74
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.92 E-value=7.8e-25 Score=184.40 Aligned_cols=146 Identities=15% Similarity=0.184 Sum_probs=108.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC------CCCCC-------CCCCChhhhhh-----------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS----------- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~------~~~~~-------~~~~~i~~~i~----------- 58 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| .+..++++++.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~ 108 (220)
T cd03263 29 EIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKS 108 (220)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCHHHHHHHHHHHcCCCHH
Confidence 3689999999999999999999999999999999976532 12233 22445665543
Q ss_pred -----HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCC
Q 026486 59 -----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN 130 (238)
Q Consensus 59 -----~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~ 130 (238)
+.++++.+++.+.... ....++++++ ++||++++. +|+++|+|||++ ||+.++..+. ++++++++ +
T Consensus 109 ~~~~~~~~~l~~~~l~~~~~~--~~~~LS~G~~qrv~la~al~~--~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~-~ 182 (220)
T cd03263 109 EIKEEVELLLRVLGLTDKANK--RARTLSGGMKRKLSLAIALIG--GPSVLLLDEPTSGLDPASRRAIW-DLILEVRK-G 182 (220)
T ss_pred HHHHHHHHHHHHcCCHHHHhC--hhhhCCHHHHHHHHHHHHHhc--CCCEEEECCCCCCCCHHHHHHHH-HHHHHHhc-C
Confidence 3456777888643211 1234555543 899999999 999999999999 9999999999 89998865 5
Q ss_pred CeEEEEEecccccccchhHHHhhhHHHH
Q 026486 131 FNVCAVYLLDSQFITDVTKFISGCMASL 158 (238)
Q Consensus 131 ~tvi~v~l~d~~~~~d~~~~~~~~l~~~ 158 (238)
.+++++ +|.......+++.++...
T Consensus 183 ~tii~~----sH~~~~~~~~~d~i~~l~ 206 (220)
T cd03263 183 RSIILT----THSMDEAEALCDRIAIMS 206 (220)
T ss_pred CEEEEE----cCCHHHHHHhcCEEEEEE
Confidence 777777 588777767766554433
No 75
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.92 E-value=5e-25 Score=188.14 Aligned_cols=148 Identities=18% Similarity=0.221 Sum_probs=110.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC---------CCCCC-------CCCCChhhhhh---------
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------ENFDY-------PVAMDIRELIS--------- 58 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~---------~~~~~-------~~~~~i~~~i~--------- 58 (238)
+++|+||||||||||+++|+|+++|++|+|.++|.++.. +.++| .+..++++++.
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~ 108 (240)
T PRK09493 29 VVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGA 108 (240)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHHhcCC
Confidence 689999999999999999999999999999999976531 12333 22345555442
Q ss_pred --------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 026486 59 --------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (238)
Q Consensus 59 --------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~ 127 (238)
+.++++.+|+.+..... ...++++++ ++||++++. +|+++++||||+ ||+.++..+. +++++++
T Consensus 109 ~~~~~~~~~~~~l~~~gl~~~~~~~--~~~LS~G~~qrv~la~al~~--~p~llllDEP~~~LD~~~~~~l~-~~l~~~~ 183 (240)
T PRK09493 109 SKEEAEKQARELLAKVGLAERAHHY--PSELSGGQQQRVAIARALAV--KPKLMLFDEPTSALDPELRHEVL-KVMQDLA 183 (240)
T ss_pred CHHHHHHHHHHHHHHcCChHHHhcC--hhhcCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHH
Confidence 34677788886432111 234555543 899999999 999999999999 9999999999 8999987
Q ss_pred hCCCeEEEEEecccccccchhHHHhhhHHHHHH
Q 026486 128 SRNFNVCAVYLLDSQFITDVTKFISGCMASLSA 160 (238)
Q Consensus 128 ~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~ 160 (238)
++|.+++++ +|...+...+++.++....+
T Consensus 184 ~~~~tiii~----sH~~~~~~~~~d~i~~l~~G 212 (240)
T PRK09493 184 EEGMTMVIV----THEIGFAEKVASRLIFIDKG 212 (240)
T ss_pred HcCCEEEEE----eCCHHHHHHhCCEEEEEECC
Confidence 678888777 48887777777755444333
No 76
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=2.9e-25 Score=194.73 Aligned_cols=156 Identities=13% Similarity=0.132 Sum_probs=119.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-----------CCCCC-CC-------CCChhhhhh------
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-PV-------AMDIRELIS------ 58 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-----------~~~~~-~~-------~~~i~~~i~------ 58 (238)
+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| ++ ..++.+++.
T Consensus 35 ~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~ 114 (287)
T PRK13641 35 FVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNF 114 (287)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhhccchHHHHHHHHHHHc
Confidence 689999999999999999999999999999999986521 12344 22 135555543
Q ss_pred ----------HHHHHHHcCCC-CCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHH
Q 026486 59 ----------LEDVMEELGLG-PNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD 124 (238)
Q Consensus 59 ----------~~~~l~~~~l~-~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~ 124 (238)
+.++++.+|+. ...... ...++++++ ++||++++. +|+++|+||||+ ||+.++..+. ++++
T Consensus 115 ~~~~~~~~~~~~~~l~~~gL~~~~~~~~--~~~LSgGq~qrl~laral~~--~p~lLlLDEPt~gLD~~~~~~l~-~~l~ 189 (287)
T PRK13641 115 GFSEDEAKEKALKWLKKVGLSEDLISKS--PFELSGGQMRRVAIAGVMAY--EPEILCLDEPAAGLDPEGRKEMM-QLFK 189 (287)
T ss_pred CCCHHHHHHHHHHHHHHcCCChhHhhCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEECCCCCCCHHHHHHHH-HHHH
Confidence 45667788886 222111 234555554 899999999 999999999999 9999999999 9999
Q ss_pred HHHhCCCeEEEEEecccccccchhHHHhhhHHHHHHHHhhcCCe
Q 026486 125 HLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPH 168 (238)
Q Consensus 125 ~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~~~p~ 168 (238)
++++.|.+++++ +|.+.+...+++.+++...+.+....+.
T Consensus 190 ~l~~~g~tvliv----sH~~~~~~~~~d~v~~l~~G~i~~~g~~ 229 (287)
T PRK13641 190 DYQKAGHTVILV----THNMDDVAEYADDVLVLEHGKLIKHASP 229 (287)
T ss_pred HHHhCCCEEEEE----eCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 987678888877 5888888888888777666665544443
No 77
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.92 E-value=3.5e-25 Score=185.76 Aligned_cols=145 Identities=18% Similarity=0.345 Sum_probs=106.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCC--CCCCCC-CC--------CCChhhhhh-------------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--AENFDY-PV--------AMDIRELIS------------- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~--~~~~~~-~~--------~~~i~~~i~------------- 58 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.++. ...++| ++ ..++++++.
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~ 105 (213)
T cd03235 26 EFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRL 105 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccccccCCCCcHHHHHHhccccccccccCC
Confidence 368999999999999999999999999999999987541 111222 11 134444432
Q ss_pred -------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 026486 59 -------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (238)
Q Consensus 59 -------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (238)
+.++++.+++.+.... ....++++++ ++||++++. +|+++|+||||+ ||+.++..+. ++++++++
T Consensus 106 ~~~~~~~~~~~l~~~~l~~~~~~--~~~~LSgG~~qrv~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~ 180 (213)
T cd03235 106 SKADKAKVDEALERVGLSELADR--QIGELSGGQQQRVLLARALVQ--DPDLLLLDEPFAGVDPKTQEDIY-ELLRELRR 180 (213)
T ss_pred CHHHHHHHHHHHHHcCCHHHHhC--CcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHh
Confidence 4456777777542211 1234555544 899999999 999999999999 9999999999 88998876
Q ss_pred CCCeEEEEEecccccccchhHHHhhhHH
Q 026486 129 RNFNVCAVYLLDSQFITDVTKFISGCMA 156 (238)
Q Consensus 129 ~~~tvi~v~l~d~~~~~d~~~~~~~~l~ 156 (238)
+|.++|++ +|.......+++.+++
T Consensus 181 ~~~tvi~~----sH~~~~~~~~~d~i~~ 204 (213)
T cd03235 181 EGMTILVV----THDLGLVLEYFDRVLL 204 (213)
T ss_pred cCCEEEEE----eCCHHHHHHhcCEEEE
Confidence 78888777 4877776676665543
No 78
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.92 E-value=6.6e-25 Score=187.52 Aligned_cols=145 Identities=17% Similarity=0.237 Sum_probs=107.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC----------CCCCC-C------CCCChhhhhh-------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-P------VAMDIRELIS------- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~----------~~~~~-~------~~~~i~~~i~------- 58 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| + +..++++++.
T Consensus 29 e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~ 108 (243)
T TIGR02315 29 EFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYK 108 (243)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcccccccHHHHHhhcccccc
Confidence 3689999999999999999999999999999999876421 12333 2 2345555442
Q ss_pred -----------------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHH
Q 026486 59 -----------------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (238)
Q Consensus 59 -----------------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~ 118 (238)
+.++++.+++....... ...++++++ ++||++++. +|+++|+||||+ ||+.++..+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrv~la~al~~--~p~llllDEPt~~LD~~~~~~l 184 (243)
T TIGR02315 109 PTWRSLLGRFSEEDKERALSALERVGLADKAYQR--ADQLSGGQQQRVAIARALAQ--QPDLILADEPIASLDPKTSKQV 184 (243)
T ss_pred cchhhhhccccHHHHHHHHHHHHHcCcHhhhcCC--cccCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHH
Confidence 34567777775432111 234555544 999999999 999999999999 999999999
Q ss_pred HHHHHHHHHh-CCCeEEEEEecccccccchhHHHhhhHH
Q 026486 119 LRNFVDHLKS-RNFNVCAVYLLDSQFITDVTKFISGCMA 156 (238)
Q Consensus 119 ~~~ll~~l~~-~~~tvi~v~l~d~~~~~d~~~~~~~~l~ 156 (238)
. ++++++.+ .|.+++++ +|.......+++.++.
T Consensus 185 ~-~~l~~~~~~~~~tiii~----tH~~~~~~~~~d~v~~ 218 (243)
T TIGR02315 185 M-DYLKRINKEDGITVIIN----LHQVDLAKKYADRIVG 218 (243)
T ss_pred H-HHHHHHHHHcCCEEEEE----eCCHHHHHHhcCeEEE
Confidence 9 99998865 47888777 4877766677665443
No 79
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=7.7e-25 Score=186.76 Aligned_cols=145 Identities=16% Similarity=0.191 Sum_probs=108.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC----------CCCCC-C------CCCChhhhhh-------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-P------VAMDIRELIS------- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~----------~~~~~-~------~~~~i~~~i~------- 58 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| + +..++++++.
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~ 107 (241)
T cd03256 28 EFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRR 107 (241)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccccCcHHHHHHhhhcccc
Confidence 3689999999999999999999999999999999976531 12333 2 2345555542
Q ss_pred -----------------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHH
Q 026486 59 -----------------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (238)
Q Consensus 59 -----------------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~ 118 (238)
+.++++.+++.+..... ...++++++ ++||++++. +|+++|+||||+ ||+.++..+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~la~al~~--~p~llllDEPt~~LD~~~~~~l 183 (241)
T cd03256 108 STWRSLFGLFPKEEKQRALAALERVGLLDKAYQR--ADQLSGGQQQRVAIARALMQ--QPKLILADEPVASLDPASSRQV 183 (241)
T ss_pred hhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCC--cccCCHHHHHHHHHHHHHhc--CCCEEEEeCccccCCHHHHHHH
Confidence 33456777775432111 234555543 999999999 999999999999 999999999
Q ss_pred HHHHHHHHHh-CCCeEEEEEecccccccchhHHHhhhHH
Q 026486 119 LRNFVDHLKS-RNFNVCAVYLLDSQFITDVTKFISGCMA 156 (238)
Q Consensus 119 ~~~ll~~l~~-~~~tvi~v~l~d~~~~~d~~~~~~~~l~ 156 (238)
+ ++++++.+ .|.+++++ +|...+...+++.+++
T Consensus 184 ~-~~l~~~~~~~~~tii~~----tH~~~~~~~~~d~v~~ 217 (241)
T cd03256 184 M-DLLKRINREEGITVIVS----LHQVDLAREYADRIVG 217 (241)
T ss_pred H-HHHHHHHHhcCCEEEEE----eCCHHHHHHhCCEEEE
Confidence 9 89998875 48888777 4888777667665443
No 80
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=3.3e-25 Score=192.72 Aligned_cols=146 Identities=18% Similarity=0.176 Sum_probs=109.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-----------CCCCC-------CCCCChhhhhh------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-------PVAMDIRELIS------ 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-----------~~~~~-------~~~~~i~~~i~------ 58 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| .+..++++++.
T Consensus 51 e~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~ 130 (269)
T cd03294 51 EIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ 130 (269)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCCCcHHHHHHHHHHhc
Confidence 3689999999999999999999999999999999976421 12333 22446666553
Q ss_pred ----------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 026486 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (238)
Q Consensus 59 ----------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~ 125 (238)
+.++++.+++.+..... ...++++++ ++||++++. +|+++|+||||+ ||+.++..+. +++++
T Consensus 131 ~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~Gq~qrv~lAral~~--~p~illLDEPt~~LD~~~~~~l~-~~l~~ 205 (269)
T cd03294 131 GVPRAEREERAAEALELVGLEGWEHKY--PDELSGGMQQRVGLARALAV--DPDILLMDEAFSALDPLIRREMQ-DELLR 205 (269)
T ss_pred CCCHHHHHHHHHHHHHHcCCHhHhhCC--cccCCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHHHHHH-HHHHH
Confidence 34567788886432111 134555543 899999999 999999999999 9999999999 99998
Q ss_pred HHh-CCCeEEEEEecccccccchhHHHhhhHHH
Q 026486 126 LKS-RNFNVCAVYLLDSQFITDVTKFISGCMAS 157 (238)
Q Consensus 126 l~~-~~~tvi~v~l~d~~~~~d~~~~~~~~l~~ 157 (238)
+.+ .|.+++++ +|...+...+++.+++.
T Consensus 206 ~~~~~g~tiii~----tH~~~~~~~~~d~v~~l 234 (269)
T cd03294 206 LQAELQKTIVFI----THDLDEALRLGDRIAIM 234 (269)
T ss_pred HHHhcCCEEEEE----eCCHHHHHHhcCEEEEE
Confidence 865 47888777 48777666776655443
No 81
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.92 E-value=2.7e-24 Score=177.43 Aligned_cols=130 Identities=15% Similarity=0.154 Sum_probs=98.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC---------CCCCC-CC-------CCChhhhhh-------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------ENFDY-PV-------AMDIRELIS------- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~---------~~~~~-~~-------~~~i~~~i~------- 58 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| ++ ..++++++.
T Consensus 19 e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~~nl~~~~~~~~ 98 (190)
T TIGR01166 19 EVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLG 98 (190)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccccHHHHHHHHHHHcC
Confidence 3789999999999999999999999999999999876521 12333 22 125555442
Q ss_pred ---------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 026486 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (238)
Q Consensus 59 ---------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l 126 (238)
+.++++.+|+.+..... ...++++++ +.||++++. +|+++|+||||+ ||+.++..+. ++++++
T Consensus 99 ~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~~~-~~l~~~ 173 (190)
T TIGR01166 99 LSEAEVERRVREALTAVGASGLRERP--THCLSGGEKKRVAIAGAVAM--RPDVLLLDEPTAGLDPAGREQML-AILRRL 173 (190)
T ss_pred CCHHHHHHHHHHHHHHcCchhhhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHH
Confidence 34567778886532221 234555543 899999999 999999999999 9999999999 999998
Q ss_pred HhCCCeEEEEE
Q 026486 127 KSRNFNVCAVY 137 (238)
Q Consensus 127 ~~~~~tvi~v~ 137 (238)
+++|.++++++
T Consensus 174 ~~~~~tili~s 184 (190)
T TIGR01166 174 RAEGMTVVIST 184 (190)
T ss_pred HHcCCEEEEEe
Confidence 77788887773
No 82
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=1e-24 Score=186.49 Aligned_cols=145 Identities=21% Similarity=0.264 Sum_probs=109.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-------CCCCC-C------CCCChhhhhh----------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-P------VAMDIRELIS---------- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~------~~~~i~~~i~---------- 58 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| + +..++++++.
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~ 107 (242)
T cd03295 28 EFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPK 107 (242)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHHHHHHHHHHHcCCCH
Confidence 3689999999999999999999999999999999976532 12333 2 2346666542
Q ss_pred ------HHHHHHHcCCCC--CCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 026486 59 ------LEDVMEELGLGP--NGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (238)
Q Consensus 59 ------~~~~l~~~~l~~--~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~ 127 (238)
+.++++.+++.+ ... .....++++++ ++||++++. +|+++|+||||+ ||+.++..+. +++++++
T Consensus 108 ~~~~~~~~~~l~~l~l~~~~~~~--~~~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~-~~L~~~~ 182 (242)
T cd03295 108 EKIRERADELLALVGLDPAEFAD--RYPHELSGGQQQRVGVARALAA--DPPLLLMDEPFGALDPITRDQLQ-EEFKRLQ 182 (242)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHh--cChhhCCHHHHHHHHHHHHHhc--CCCEEEecCCcccCCHHHHHHHH-HHHHHHH
Confidence 456778888875 211 11234555554 899999999 999999999999 9999999999 8899887
Q ss_pred hC-CCeEEEEEecccccccchhHHHhhhHH
Q 026486 128 SR-NFNVCAVYLLDSQFITDVTKFISGCMA 156 (238)
Q Consensus 128 ~~-~~tvi~v~l~d~~~~~d~~~~~~~~l~ 156 (238)
++ |.++|++ +|...+...+++.++.
T Consensus 183 ~~~g~tvii~----sH~~~~~~~~~d~i~~ 208 (242)
T cd03295 183 QELGKTIVFV----THDIDEAFRLADRIAI 208 (242)
T ss_pred HHcCCEEEEE----ecCHHHHHHhCCEEEE
Confidence 64 7888777 4777766666664443
No 83
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=7.9e-25 Score=186.20 Aligned_cols=138 Identities=14% Similarity=0.151 Sum_probs=105.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-----------CCCCC-C------CCCChhhhhh------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-P------VAMDIRELIS------ 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-----------~~~~~-~------~~~~i~~~i~------ 58 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| + +..++++++.
T Consensus 36 e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~ 115 (233)
T PRK11629 36 EMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIG 115 (233)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhc
Confidence 3689999999999999999999999999999999977531 22444 2 2346666543
Q ss_pred ----------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 026486 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (238)
Q Consensus 59 ----------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~ 125 (238)
+.++++.+|+.+..... ...++++++ ++||++++. +|+++|+||||+ ||+.++..+. +++++
T Consensus 116 ~~~~~~~~~~~~~~l~~~gl~~~~~~~--~~~LSgG~~qrl~la~al~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~ 190 (233)
T PRK11629 116 KKKPAEINSRALEMLAAVGLEHRANHR--PSELSGGERQRVAIARALVN--NPRLVLADEPTGNLDARNADSIF-QLLGE 190 (233)
T ss_pred CCCHHHHHHHHHHHHHHcCCchhhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHH-HHHHH
Confidence 45677888886532221 234555544 899999999 999999999999 9999999999 99999
Q ss_pred HHh-CCCeEEEEEecccccccchhH
Q 026486 126 LKS-RNFNVCAVYLLDSQFITDVTK 149 (238)
Q Consensus 126 l~~-~~~tvi~v~l~d~~~~~d~~~ 149 (238)
+++ .|.+++++ +|.......
T Consensus 191 ~~~~~g~tvii~----sH~~~~~~~ 211 (233)
T PRK11629 191 LNRLQGTAFLVV----THDLQLAKR 211 (233)
T ss_pred HHHhCCCEEEEE----eCCHHHHHh
Confidence 865 58888877 477665443
No 84
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=1.1e-24 Score=190.29 Aligned_cols=155 Identities=12% Similarity=0.127 Sum_probs=115.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-------CCCCC-CC-------CCChhhhhh----------
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-------AMDIRELIS---------- 58 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~-------~~~i~~~i~---------- 58 (238)
+++|+||||||||||+++|+|+++|++|+|.++|.+... ..++| ++ ..++++++.
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~ 114 (279)
T PRK13650 35 WLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPH 114 (279)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhCCCCH
Confidence 689999999999999999999999999999999987632 12333 11 235666553
Q ss_pred ------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC
Q 026486 59 ------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR 129 (238)
Q Consensus 59 ------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~ 129 (238)
+.++++.+|+.+..... ...++++++ ++||++++. +|+++|+||||+ ||+.+++.++ +++++++++
T Consensus 115 ~~~~~~~~~~l~~~gL~~~~~~~--~~~LSgGq~qrv~lAral~~--~p~lLlLDEPt~~LD~~~~~~l~-~~l~~l~~~ 189 (279)
T PRK13650 115 EEMKERVNEALELVGMQDFKERE--PARLSGGQKQRVAIAGAVAM--RPKIIILDEATSMLDPEGRLELI-KTIKGIRDD 189 (279)
T ss_pred HHHHHHHHHHHHHCCCHhHhhCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEECCcccCCHHHHHHHH-HHHHHHHHh
Confidence 46678888886532222 134555543 899999999 999999999999 9999999999 999998764
Q ss_pred -CCeEEEEEecccccccchhHHHhhhHHHHHHHHhhcCCe
Q 026486 130 -NFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPH 168 (238)
Q Consensus 130 -~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~~~p~ 168 (238)
|.|++++ +|.+... .+++.+++...+.+....+.
T Consensus 190 ~g~tiliv----tH~~~~~-~~~dri~~l~~G~i~~~g~~ 224 (279)
T PRK13650 190 YQMTVISI----THDLDEV-ALSDRVLVMKNGQVESTSTP 224 (279)
T ss_pred cCCEEEEE----ecCHHHH-HhCCEEEEEECCEEEEECCH
Confidence 8899888 4777665 46776666555555544443
No 85
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=3.3e-24 Score=185.06 Aligned_cols=146 Identities=14% Similarity=0.170 Sum_probs=110.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC--CCCCC-------CCCCChhhhhh---------------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--ENFDY-------PVAMDIRELIS--------------- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~--~~~~~-------~~~~~i~~~i~--------------- 58 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| .+..++.+++.
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~ 107 (255)
T PRK11248 28 ELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLE 107 (255)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHH
Confidence 4689999999999999999999999999999999877532 11222 22345555542
Q ss_pred -HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CCCeE
Q 026486 59 -LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNV 133 (238)
Q Consensus 59 -~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~~tv 133 (238)
+.++++.+|+.+.... ....++++++ ++||++++. +|+++|+||||+ ||+.++..+. ++++++.+ .|.++
T Consensus 108 ~~~~~l~~~gl~~~~~~--~~~~LSgGq~qrl~laral~~--~p~lllLDEPt~~LD~~~~~~l~-~~L~~~~~~~g~tv 182 (255)
T PRK11248 108 IAHQMLKKVGLEGAEKR--YIWQLSGGQRQRVGIARALAA--NPQLLLLDEPFGALDAFTREQMQ-TLLLKLWQETGKQV 182 (255)
T ss_pred HHHHHHHHcCChhHhhC--ChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH-HHHHHHHHhcCCEE
Confidence 4567788888643221 1234666554 899999999 999999999999 9999999999 88998854 58888
Q ss_pred EEEEecccccccchhHHHhhhHHH
Q 026486 134 CAVYLLDSQFITDVTKFISGCMAS 157 (238)
Q Consensus 134 i~v~l~d~~~~~d~~~~~~~~l~~ 157 (238)
|++ +|.......+++.+++.
T Consensus 183 iiv----sH~~~~~~~~~d~i~~l 202 (255)
T PRK11248 183 LLI----THDIEEAVFMATELVLL 202 (255)
T ss_pred EEE----eCCHHHHHHhCCEEEEE
Confidence 877 48887777777765544
No 86
>PRK10908 cell division protein FtsE; Provisional
Probab=99.91 E-value=1.2e-24 Score=183.74 Aligned_cols=144 Identities=13% Similarity=0.131 Sum_probs=108.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC----------CCCCC-C------CCCChhhhhh-------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-P------VAMDIRELIS------- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~----------~~~~~-~------~~~~i~~~i~------- 58 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| + +..++++++.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~ 108 (222)
T PRK10908 29 EMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAG 108 (222)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhheEEEecCccccccccHHHHHHhHHHhcC
Confidence 3689999999999999999999999999999999876531 12333 1 2345555543
Q ss_pred ---------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 026486 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (238)
Q Consensus 59 ---------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l 126 (238)
+.++++.+++.+..... ...++++++ ++||++++. +|+++|+||||+ ||+.++..+. ++++++
T Consensus 109 ~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~ 183 (222)
T PRK10908 109 ASGDDIRRRVSAALDKVGLLDKAKNF--PIQLSGGEQQRVGIARAVVN--KPAVLLADEPTGNLDDALSEGIL-RLFEEF 183 (222)
T ss_pred CCHHHHHHHHHHHHHHcCChhhhhCC--chhCCHHHHHHHHHHHHHHc--CCCEEEEeCCCCcCCHHHHHHHH-HHHHHH
Confidence 34567788876532111 234555543 899999999 999999999999 9999999999 899998
Q ss_pred HhCCCeEEEEEecccccccchhHHHhhhH
Q 026486 127 KSRNFNVCAVYLLDSQFITDVTKFISGCM 155 (238)
Q Consensus 127 ~~~~~tvi~v~l~d~~~~~d~~~~~~~~l 155 (238)
++++.+++++ +|...+...+++.++
T Consensus 184 ~~~~~tiii~----sH~~~~~~~~~d~i~ 208 (222)
T PRK10908 184 NRVGVTVLMA----THDIGLISRRSYRML 208 (222)
T ss_pred HHCCCEEEEE----eCCHHHHHHhCCEEE
Confidence 7667888777 477776666666443
No 87
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.91 E-value=4.2e-24 Score=178.02 Aligned_cols=144 Identities=16% Similarity=0.117 Sum_probs=109.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC------CCCCC-------CCCCChhhhhh----------H
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS----------L 59 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~------~~~~~-------~~~~~i~~~i~----------~ 59 (238)
-+++|+|+||||||||+++|+|+++|++|+|.++|.++.. ..++| .+..++++++. +
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~ 106 (201)
T cd03231 27 EALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLENLRFWHADHSDEQV 106 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEeccccccCCCcCHHHHHHhhcccccHHHH
Confidence 4689999999999999999999999999999999877532 12333 22356666653 5
Q ss_pred HHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 026486 60 EDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (238)
Q Consensus 60 ~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~tvi~v 136 (238)
+++++.+++.+..... ...++++++ +++|++++. +|+++|+||||+ ||+.+++.+. ++++++.++|.+++++
T Consensus 107 ~~~l~~~~l~~~~~~~--~~~LS~G~~qrl~laral~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~g~tiii~ 181 (201)
T cd03231 107 EEALARVGLNGFEDRP--VAQLSAGQQRRVALARLLLS--GRPLWILDEPTTALDKAGVARFA-EAMAGHCARGGMVVLT 181 (201)
T ss_pred HHHHHHcCChhhhcCc--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhCCCEEEEE
Confidence 6678888887532211 234555543 899999999 999999999999 9999999999 8888887678888777
Q ss_pred EecccccccchhHHHhhhH
Q 026486 137 YLLDSQFITDVTKFISGCM 155 (238)
Q Consensus 137 ~l~d~~~~~d~~~~~~~~l 155 (238)
+|...+...+++.++
T Consensus 182 ----sH~~~~~~~~~~~~~ 196 (201)
T cd03231 182 ----THQDLGLSEAGAREL 196 (201)
T ss_pred ----ecCchhhhhccceeE
Confidence 476666666666543
No 88
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=1e-24 Score=182.65 Aligned_cols=143 Identities=20% Similarity=0.303 Sum_probs=106.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC------CCCCC-------CCCCChhhhhh------------
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS------------ 58 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~------~~~~~-------~~~~~i~~~i~------------ 58 (238)
+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| .+..++.+++.
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~ 106 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKE 106 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEecCCCcccccCCHHHHHHHHHHHhCCCHHH
Confidence 689999999999999999999999999999999976532 12333 22346666553
Q ss_pred ----HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCC
Q 026486 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNF 131 (238)
Q Consensus 59 ----~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~ 131 (238)
+.++++.+++.+.... ....++++++ ++||++++. +|+++|+||||+ ||+.++..+. ++++++++ +.
T Consensus 107 ~~~~~~~~l~~~~l~~~~~~--~~~~LS~G~~qrv~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~-~~ 180 (211)
T cd03264 107 VKARVDEVLELVNLGDRAKK--KIGSLSGGMRRRVGIAQALVG--DPSILIVDEPTAGLDPEERIRFR-NLLSELGE-DR 180 (211)
T ss_pred HHHHHHHHHHHCCCHHHHhC--chhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHhC-CC
Confidence 3456777787643211 1234555543 899999999 999999999999 9999999999 99999875 57
Q ss_pred eEEEEEecccccccchhHHHhhhHH
Q 026486 132 NVCAVYLLDSQFITDVTKFISGCMA 156 (238)
Q Consensus 132 tvi~v~l~d~~~~~d~~~~~~~~l~ 156 (238)
+++++ +|.......+++.+++
T Consensus 181 tii~v----sH~~~~~~~~~d~i~~ 201 (211)
T cd03264 181 IVILS----THIVEDVESLCNQVAV 201 (211)
T ss_pred EEEEE----cCCHHHHHHhCCEEEE
Confidence 77777 5777766666665443
No 89
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.91 E-value=9.9e-25 Score=188.64 Aligned_cols=152 Identities=16% Similarity=0.158 Sum_probs=114.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCC--CCCCCC-------CCCCChhhhhh----------HHHHH
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--AENFDY-------PVAMDIRELIS----------LEDVM 63 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~--~~~~~~-------~~~~~i~~~i~----------~~~~l 63 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.+.. ...++| .+..++++++. +.+++
T Consensus 39 e~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l 118 (257)
T PRK11247 39 QFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQAL 118 (257)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecCccCCCCCcHHHHHHhcccchHHHHHHHHH
Confidence 368999999999999999999999999999999876532 122222 23356766653 45678
Q ss_pred HHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CCCeEEEEEec
Q 026486 64 EELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNVCAVYLL 139 (238)
Q Consensus 64 ~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~~tvi~v~l~ 139 (238)
+.+++.+..... ...++++++ ++||++++. +|+++|+||||+ ||+.++..+. ++++++.+ .+.+++++
T Consensus 119 ~~~gl~~~~~~~--~~~LSgGqkqrl~laraL~~--~p~lllLDEPt~~LD~~~~~~l~-~~L~~~~~~~~~tviiv--- 190 (257)
T PRK11247 119 AAVGLADRANEW--PAALSGGQKQRVALARALIH--RPGLLLLDEPLGALDALTRIEMQ-DLIESLWQQHGFTVLLV--- 190 (257)
T ss_pred HHcCChhHhcCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHHHcCCEEEEE---
Confidence 888886532111 234666554 899999999 999999999999 9999999999 88888854 57888777
Q ss_pred ccccccchhHHHhhhHHHHHHHHh
Q 026486 140 DSQFITDVTKFISGCMASLSAMVQ 163 (238)
Q Consensus 140 d~~~~~d~~~~~~~~l~~~~~~~~ 163 (238)
+|.......+++.+++...+.+.
T Consensus 191 -sHd~~~~~~~~d~i~~l~~G~i~ 213 (257)
T PRK11247 191 -THDVSEAVAMADRVLLIEEGKIG 213 (257)
T ss_pred -eCCHHHHHHhCCEEEEEECCEEE
Confidence 58887777777766665555443
No 90
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.91 E-value=1.6e-24 Score=183.04 Aligned_cols=150 Identities=14% Similarity=0.176 Sum_probs=113.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC---CCCCC-------CCCCChhhhhh------------HH
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---ENFDY-------PVAMDIRELIS------------LE 60 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~---~~~~~-------~~~~~i~~~i~------------~~ 60 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| .+..++++++. +.
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~ 106 (223)
T TIGR03740 27 SVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESPPLYENLTARENLKVHTTLLGLPDSRID 106 (223)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCCCccccCCHHHHHHHHHHHcCCCHHHHH
Confidence 3689999999999999999999999999999999876431 12223 22356666653 45
Q ss_pred HHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEE
Q 026486 61 DVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVY 137 (238)
Q Consensus 61 ~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~tvi~v~ 137 (238)
++++.+|+.+.... ....++++++ +++|++++. +|+++++|||++ ||+.++..++ +++++++++|.+++++
T Consensus 107 ~~l~~~~l~~~~~~--~~~~LS~G~~~rv~laral~~--~p~llllDEP~~~LD~~~~~~l~-~~L~~~~~~~~tiii~- 180 (223)
T TIGR03740 107 EVLNIVDLTNTGKK--KAKQFSLGMKQRLGIAIALLN--HPKLLILDEPTNGLDPIGIQELR-ELIRSFPEQGITVILS- 180 (223)
T ss_pred HHHHHcCCcHHHhh--hHhhCCHHHHHHHHHHHHHhc--CCCEEEECCCccCCCHHHHHHHH-HHHHHHHHCCCEEEEE-
Confidence 67788888753222 1234555543 899999999 999999999999 9999999999 9999887668888777
Q ss_pred ecccccccchhHHHhhhHHHHHHH
Q 026486 138 LLDSQFITDVTKFISGCMASLSAM 161 (238)
Q Consensus 138 l~d~~~~~d~~~~~~~~l~~~~~~ 161 (238)
+|...+...+++.++....+.
T Consensus 181 ---sH~~~~~~~~~d~i~~l~~g~ 201 (223)
T TIGR03740 181 ---SHILSEVQQLADHIGIISEGV 201 (223)
T ss_pred ---cCCHHHHHHhcCEEEEEeCCE
Confidence 588877777777555444333
No 91
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=8.6e-25 Score=188.18 Aligned_cols=145 Identities=16% Similarity=0.144 Sum_probs=107.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC--------CCCCC-C------CCCChhhhhh---------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-P------VAMDIRELIS--------- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~--------~~~~~-~------~~~~i~~~i~--------- 58 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| + +..++++++.
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~ 111 (255)
T PRK11300 32 EIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKT 111 (255)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccc
Confidence 4689999999999999999999999999999999976532 12332 2 2345655433
Q ss_pred ----------------------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHH
Q 026486 59 ----------------------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELF 113 (238)
Q Consensus 59 ----------------------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~ 113 (238)
+.++++.+|+.+..... ...++++++ ++||++++. +|+++|+||||+ ||+.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~--~~~LS~G~~qrv~la~al~~--~p~llllDEPt~~LD~~ 187 (255)
T PRK11300 112 GLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQ--AGNLAYGQQRRLEIARCMVT--QPEILMLDEPAAGLNPK 187 (255)
T ss_pred hhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCccCCCHH
Confidence 23445667775432111 234555543 899999999 999999999999 9999
Q ss_pred hHHHHHHHHHHHHHhC-CCeEEEEEecccccccchhHHHhhhHH
Q 026486 114 THVPVLRNFVDHLKSR-NFNVCAVYLLDSQFITDVTKFISGCMA 156 (238)
Q Consensus 114 ~~~~~~~~ll~~l~~~-~~tvi~v~l~d~~~~~d~~~~~~~~l~ 156 (238)
++..+. +++.+++++ |.++|++ +|...+...+++.+++
T Consensus 188 ~~~~l~-~~L~~~~~~~~~tii~~----sH~~~~~~~~~d~i~~ 226 (255)
T PRK11300 188 ETKELD-ELIAELRNEHNVTVLLI----EHDMKLVMGISDRIYV 226 (255)
T ss_pred HHHHHH-HHHHHHHhhcCCEEEEE----eCCHHHHHHhCCEEEE
Confidence 999999 999998764 8888877 4888777777765443
No 92
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=1.2e-24 Score=182.68 Aligned_cols=144 Identities=17% Similarity=0.205 Sum_probs=107.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-----------CCCCC-------CCCCChhhhhh-------
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-------PVAMDIRELIS------- 58 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-----------~~~~~-------~~~~~i~~~i~------- 58 (238)
+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| .+..++.+++.
T Consensus 25 ~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~ 104 (214)
T cd03297 25 VTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRKR 104 (214)
T ss_pred eEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHHHHHHHHHhhCC
Confidence 689999999999999999999999999999999876421 12333 22345655543
Q ss_pred -------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 026486 59 -------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (238)
Q Consensus 59 -------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (238)
+.++++.+|+...... ....++++++ +.||++++. +|+++|+||||+ ||+.+++.+. ++++++++
T Consensus 105 ~~~~~~~~~~~l~~~~l~~~~~~--~~~~LS~G~~qrv~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~ 179 (214)
T cd03297 105 NREDRISVDELLDLLGLDHLLNR--YPAQLSGGEKQRVALARALAA--QPELLLLDEPFSALDRALRLQLL-PELKQIKK 179 (214)
T ss_pred HHHHHHHHHHHHHHcCCHhHhhc--CcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHHH
Confidence 4457778888643211 1234555544 899999999 999999999999 9999999999 99999876
Q ss_pred C-CCeEEEEEecccccccchhHHHhhhHH
Q 026486 129 R-NFNVCAVYLLDSQFITDVTKFISGCMA 156 (238)
Q Consensus 129 ~-~~tvi~v~l~d~~~~~d~~~~~~~~l~ 156 (238)
+ |.+++++ +|...+...+++.+++
T Consensus 180 ~~~~tiii~----sH~~~~~~~~~d~i~~ 204 (214)
T cd03297 180 NLNIPVIFV----THDLSEAEYLADRIVV 204 (214)
T ss_pred HcCcEEEEE----ecCHHHHHHhcCEEEE
Confidence 4 7888777 4777766666665443
No 93
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=4.3e-25 Score=192.05 Aligned_cols=157 Identities=13% Similarity=0.092 Sum_probs=115.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC---------CCCCC-CCC-------CChhhhhh-------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------ENFDY-PVA-------MDIRELIS------- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~---------~~~~~-~~~-------~~i~~~i~------- 58 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| +++ .++.+++.
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~~ 107 (271)
T PRK13638 28 PVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLG 107 (271)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheEEEeeChhhccccccHHHHHHHHHHHcC
Confidence 3689999999999999999999999999999999987521 12344 221 13443332
Q ss_pred ---------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 026486 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (238)
Q Consensus 59 ---------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l 126 (238)
+.++++.+|+.+..... ...++++++ ++||++++. +|+++|+||||+ ||+.++..+. ++++++
T Consensus 108 ~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrl~laraL~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~~ 182 (271)
T PRK13638 108 VPEAEITRRVDEALTLVDAQHFRHQP--IQCLSHGQKKRVAIAGALVL--QARYLLLDEPTAGLDPAGRTQMI-AIIRRI 182 (271)
T ss_pred CCHHHHHHHHHHHHHHcCCHhHhcCC--chhCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHH
Confidence 34567777875432111 234555544 899999999 999999999999 9999999999 999998
Q ss_pred HhCCCeEEEEEecccccccchhHHHhhhHHHHHHHHhhcCCe
Q 026486 127 KSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPH 168 (238)
Q Consensus 127 ~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~~~p~ 168 (238)
+++|.+++++ +|...+...+++.+++...+.+....+.
T Consensus 183 ~~~g~tii~v----tH~~~~~~~~~d~i~~l~~G~i~~~g~~ 220 (271)
T PRK13638 183 VAQGNHVIIS----SHDIDLIYEISDAVYVLRQGQILTHGAP 220 (271)
T ss_pred HHCCCEEEEE----eCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 7668888777 4888777778887766655555444433
No 94
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1.6e-24 Score=185.18 Aligned_cols=150 Identities=14% Similarity=0.219 Sum_probs=110.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC--------CCCCC-C------CCCChhhhhh---------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-P------VAMDIRELIS--------- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~--------~~~~~-~------~~~~i~~~i~--------- 58 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| + +..++.+++.
T Consensus 30 e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~ 109 (241)
T PRK10895 30 EIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDL 109 (241)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhccccc
Confidence 3689999999999999999999999999999999976531 12333 2 2235544432
Q ss_pred --------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 026486 59 --------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (238)
Q Consensus 59 --------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~ 127 (238)
+.++++.+++...... ....++++++ ++||++++. +|+++|+||||+ ||+.++..+. +++++++
T Consensus 110 ~~~~~~~~~~~~l~~~~l~~~~~~--~~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~ 184 (241)
T PRK10895 110 SAEQREDRANELMEEFHIEHLRDS--MGQSLSGGERRRVEIARALAA--NPKFILLDEPFAGVDPISVIDIK-RIIEHLR 184 (241)
T ss_pred CHHHHHHHHHHHHHHcCCHHHhhc--chhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHH
Confidence 4556777777543211 1234555544 899999999 999999999999 9999999998 8899887
Q ss_pred hCCCeEEEEEecccccccchhHHHhhhHHHHHHH
Q 026486 128 SRNFNVCAVYLLDSQFITDVTKFISGCMASLSAM 161 (238)
Q Consensus 128 ~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~ 161 (238)
++|.+++++ +|...+...+++.++....+.
T Consensus 185 ~~g~tiii~----sH~~~~~~~~~d~v~~l~~G~ 214 (241)
T PRK10895 185 DSGLGVLIT----DHNVRETLAVCERAYIVSQGH 214 (241)
T ss_pred hcCCEEEEE----EcCHHHHHHhcCEEEEEeCCe
Confidence 678888777 487777777777555444333
No 95
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=5.3e-25 Score=192.25 Aligned_cols=153 Identities=14% Similarity=0.119 Sum_probs=113.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-----------CCCCC-CC-------CCChhhhhh-----
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-PV-------AMDIRELIS----- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-----------~~~~~-~~-------~~~i~~~i~----- 58 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| ++ ..++++++.
T Consensus 34 e~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~ 113 (280)
T PRK13649 34 SYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQN 113 (280)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhccccHHHHHHHHHHH
Confidence 3689999999999999999999999999999999876421 12344 22 125555543
Q ss_pred -----------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHH
Q 026486 59 -----------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD 124 (238)
Q Consensus 59 -----------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~ 124 (238)
++++++.+++.+... ......++++++ +.||++++. +|+++|+||||+ ||+.++..+. ++++
T Consensus 114 ~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~~LSgG~~qrv~la~al~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~ 189 (280)
T PRK13649 114 FGVSQEEAEALAREKLALVGISESLF-EKNPFELSGGQMRRVAIAGILAM--EPKILVLDEPTAGLDPKGRKELM-TLFK 189 (280)
T ss_pred cCCCHHHHHHHHHHHHHHcCCChhhh-hCCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHH
Confidence 345667788863210 111234555544 899999999 999999999999 9999999999 8899
Q ss_pred HHHhCCCeEEEEEecccccccchhHHHhhhHHHHHHHHh
Q 026486 125 HLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQ 163 (238)
Q Consensus 125 ~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~ 163 (238)
++++.+.++|++ +|...+...+++.+++...+.+.
T Consensus 190 ~~~~~~~tiiiv----sH~~~~~~~~~d~i~~l~~G~i~ 224 (280)
T PRK13649 190 KLHQSGMTIVLV----THLMDDVANYADFVYVLEKGKLV 224 (280)
T ss_pred HHHHCCCEEEEE----eccHHHHHHhCCEEEEEECCEEE
Confidence 887668888877 48887777777776665555443
No 96
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.91 E-value=1.1e-24 Score=183.63 Aligned_cols=136 Identities=15% Similarity=0.137 Sum_probs=103.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-----------CCCCC-------CCCCChhhhhh------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-------PVAMDIRELIS------ 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-----------~~~~~-------~~~~~i~~~i~------ 58 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| .+..++++++.
T Consensus 32 ~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~ 111 (221)
T TIGR02211 32 EIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIG 111 (221)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhc
Confidence 3689999999999999999999999999999999876521 22333 22345666542
Q ss_pred ----------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 026486 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (238)
Q Consensus 59 ----------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~ 125 (238)
+.++++.+|+.+..... ...++++++ ++||++++. +|+++|+||||+ ||+.++..+. +++++
T Consensus 112 ~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~laral~~--~p~illlDEPt~~LD~~~~~~l~-~~l~~ 186 (221)
T TIGR02211 112 KKSVKEAKERAYEMLEKVGLEHRINHR--PSELSGGERQRVAIARALVN--QPSLVLADEPTGNLDNNNAKIIF-DLMLE 186 (221)
T ss_pred CCCHHHHHHHHHHHHHHcCChhhhhCC--hhhCCHHHHHHHHHHHHHhC--CCCEEEEeCCCCcCCHHHHHHHH-HHHHH
Confidence 34677788886532221 234656544 899999999 999999999999 9999999999 89998
Q ss_pred HHh-CCCeEEEEEecccccccch
Q 026486 126 LKS-RNFNVCAVYLLDSQFITDV 147 (238)
Q Consensus 126 l~~-~~~tvi~v~l~d~~~~~d~ 147 (238)
+++ .+.+++++ +|....+
T Consensus 187 ~~~~~~~tii~~----tH~~~~~ 205 (221)
T TIGR02211 187 LNRELNTSFLVV----THDLELA 205 (221)
T ss_pred HHHhcCCEEEEE----eCCHHHH
Confidence 875 47888777 3666544
No 97
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.91 E-value=1.2e-24 Score=189.12 Aligned_cols=150 Identities=17% Similarity=0.222 Sum_probs=111.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC----------CCCCC-------CCCCChhhhhh-------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-------PVAMDIRELIS------- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~----------~~~~~-------~~~~~i~~~i~------- 58 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| .+..++.+++.
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~ 113 (269)
T PRK11831 34 KITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHT 113 (269)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHcc
Confidence 3689999999999999999999999999999999876421 12333 22346666553
Q ss_pred ----------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 026486 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (238)
Q Consensus 59 ----------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~ 125 (238)
+.++++.+|+....... ...++++++ ++||++++. +|+++|+||||+ ||+.++..+. +++++
T Consensus 114 ~~~~~~~~~~~~~~l~~~gl~~~~~~~--~~~LSgGq~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~ 188 (269)
T PRK11831 114 QLPAPLLHSTVMMKLEAVGLRGAAKLM--PSELSGGMARRAALARAIAL--EPDLIMFDEPFVGQDPITMGVLV-KLISE 188 (269)
T ss_pred CCCHHHHHHHHHHHHHHcCChhhhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHHHHHH-HHHHH
Confidence 22356777886432221 245666654 899999999 999999999999 9999999999 99999
Q ss_pred HHhC-CCeEEEEEecccccccchhHHHhhhHHHHHHH
Q 026486 126 LKSR-NFNVCAVYLLDSQFITDVTKFISGCMASLSAM 161 (238)
Q Consensus 126 l~~~-~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~ 161 (238)
++++ |.++|++ +|...+...+++.+++...+.
T Consensus 189 ~~~~~g~tiiiv----sH~~~~~~~~~d~v~~l~~G~ 221 (269)
T PRK11831 189 LNSALGVTCVVV----SHDVPEVLSIADHAYIVADKK 221 (269)
T ss_pred HHHhcCcEEEEE----ecCHHHHHHhhCEEEEEECCE
Confidence 8754 7888877 487777777777555443333
No 98
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=9.4e-25 Score=199.19 Aligned_cols=153 Identities=18% Similarity=0.192 Sum_probs=118.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-----------CCCCC-------CCCCChhhhhh------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-------PVAMDIRELIS------ 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-----------~~~~~-------~~~~~i~~~i~------ 58 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| ++..++++++.
T Consensus 55 ei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~ 134 (400)
T PRK10070 55 EIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELA 134 (400)
T ss_pred CEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhc
Confidence 3689999999999999999999999999999999987531 23444 23456776654
Q ss_pred ----------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 026486 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (238)
Q Consensus 59 ----------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~ 125 (238)
+.++++.+|+.+..... ...++++++ ++||++++. +|+++|+|||++ ||+.++..+. +++++
T Consensus 135 ~~~~~~~~~~~~e~L~~~gL~~~~~~~--~~~LSgGq~QRv~LArAL~~--~P~iLLLDEPts~LD~~~r~~l~-~~L~~ 209 (400)
T PRK10070 135 GINAEERREKALDALRQVGLENYAHSY--PDELSGGMRQRVGLARALAI--NPDILLMDEAFSALDPLIRTEMQ-DELVK 209 (400)
T ss_pred CCCHHHHHHHHHHHHHHcCCChhhhcC--cccCCHHHHHHHHHHHHHhc--CCCEEEEECCCccCCHHHHHHHH-HHHHH
Confidence 34578888887543222 234656544 999999999 999999999999 9999999999 88888
Q ss_pred HHh-CCCeEEEEEecccccccchhHHHhhhHHHHHHHHhh
Q 026486 126 LKS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQL 164 (238)
Q Consensus 126 l~~-~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~ 164 (238)
+++ .++|++++ +|.+.+...+++.+++...+.+..
T Consensus 210 l~~~~g~TIIiv----THd~~~~~~~~Dri~vL~~G~i~~ 245 (400)
T PRK10070 210 LQAKHQRTIVFI----SHDLDEAMRIGDRIAIMQNGEVVQ 245 (400)
T ss_pred HHHHCCCeEEEE----ECCHHHHHHhCCEEEEEECCEEEe
Confidence 865 58888888 488887778888776665555443
No 99
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.91 E-value=8.8e-25 Score=196.86 Aligned_cols=154 Identities=14% Similarity=0.196 Sum_probs=118.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-----------CCCCC-------CCCCChhhhhh------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-------PVAMDIRELIS------ 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-----------~~~~~-------~~~~~i~~~i~------ 58 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| .+..++++++.
T Consensus 25 e~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~ 104 (352)
T PRK11144 25 GITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMAKS 104 (352)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHHHHHhhhhhh
Confidence 3689999999999999999999999999999999876421 22333 23457777764
Q ss_pred ----HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC-C
Q 026486 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-N 130 (238)
Q Consensus 59 ----~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~ 130 (238)
+.++++.+|+.+..... ...++++++ ++||++++. +|+++|||||++ ||+.++..+. ++++++.++ |
T Consensus 105 ~~~~~~~~l~~~gl~~~~~~~--~~~LSgGq~qRvalaraL~~--~p~llLLDEPts~LD~~~~~~l~-~~L~~l~~~~g 179 (352)
T PRK11144 105 MVAQFDKIVALLGIEPLLDRY--PGSLSGGEKQRVAIGRALLT--APELLLMDEPLASLDLPRKRELL-PYLERLAREIN 179 (352)
T ss_pred hHHHHHHHHHHcCCchhhhCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHhcC
Confidence 56788889987542222 234555544 999999999 999999999999 9999999999 888888764 7
Q ss_pred CeEEEEEecccccccchhHHHhhhHHHHHHHHhhc
Q 026486 131 FNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLE 165 (238)
Q Consensus 131 ~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~~ 165 (238)
.++++| +|...+...+++.+++...+.+...
T Consensus 180 ~tii~v----THd~~~~~~~~d~i~~l~~G~i~~~ 210 (352)
T PRK11144 180 IPILYV----SHSLDEILRLADRVVVLEQGKVKAF 210 (352)
T ss_pred CeEEEE----ecCHHHHHHhCCEEEEEeCCEEEEe
Confidence 888888 4888877788887766655554433
No 100
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.91 E-value=1.5e-24 Score=186.09 Aligned_cols=146 Identities=16% Similarity=0.208 Sum_probs=108.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC---------------CCCCC-------CCCCChhhhhh--
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------------ENFDY-------PVAMDIRELIS-- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~---------------~~~~~-------~~~~~i~~~i~-- 58 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..++| .+..++.+++.
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~ 109 (250)
T PRK11264 30 EVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEG 109 (250)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHH
Confidence 3689999999999999999999999999999999865421 12333 22345655542
Q ss_pred ---------------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHH
Q 026486 59 ---------------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (238)
Q Consensus 59 ---------------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~ 120 (238)
+.++++.+|+.+.... ....++++++ +.||++++. +|+++|+||||+ ||+.++..+.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~--~~~~LS~Gq~qrv~la~al~~--~p~lllLDEPt~~LD~~~~~~l~- 184 (250)
T PRK11264 110 PVIVKGEPKEEATARARELLAKVGLAGKETS--YPRRLSGGQQQRVAIARALAM--RPEVILFDEPTSALDPELVGEVL- 184 (250)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHcCCcchhhC--ChhhCChHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH-
Confidence 3456777788643211 1234555544 899999999 999999999999 9999999999
Q ss_pred HHHHHHHhCCCeEEEEEecccccccchhHHHhhhHHH
Q 026486 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMAS 157 (238)
Q Consensus 121 ~ll~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~ 157 (238)
++++++.++|.+++++ +|...+...+++.+++.
T Consensus 185 ~~l~~~~~~~~tvi~~----tH~~~~~~~~~d~i~~l 217 (250)
T PRK11264 185 NTIRQLAQEKRTMVIV----THEMSFARDVADRAIFM 217 (250)
T ss_pred HHHHHHHhcCCEEEEE----eCCHHHHHHhcCEEEEE
Confidence 8999987678888777 48777666666654443
No 101
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.91 E-value=1.2e-24 Score=196.20 Aligned_cols=153 Identities=17% Similarity=0.217 Sum_probs=117.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-----------CCCCC-------CCCCChhhhhh------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-------PVAMDIRELIS------ 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-----------~~~~~-------~~~~~i~~~i~------ 58 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| ++..++++++.
T Consensus 24 ei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~ 103 (354)
T TIGR02142 24 GVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRGNLRYGMKRA 103 (354)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHHHHHHHhhcc
Confidence 3689999999999999999999999999999999976521 12333 23456776653
Q ss_pred --------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 026486 59 --------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (238)
Q Consensus 59 --------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~ 127 (238)
+.++++.+|+.+..... ...++++++ ++||++++. +|+++|||||++ ||+.++..++ +++++++
T Consensus 104 ~~~~~~~~~~~~l~~~gL~~~~~~~--~~~LSgGqkqRvalAraL~~--~p~lllLDEPts~LD~~~~~~l~-~~L~~l~ 178 (354)
T TIGR02142 104 RPSERRISFERVIELLGIGHLLGRL--PGRLSGGEKQRVAIGRALLS--SPRLLLMDEPLAALDDPRKYEIL-PYLERLH 178 (354)
T ss_pred ChhHHHHHHHHHHHHcCChhHhcCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEcCCCcCCCHHHHHHHH-HHHHHHH
Confidence 45678888887543222 234666554 999999999 999999999999 9999999999 8899887
Q ss_pred hC-CCeEEEEEecccccccchhHHHhhhHHHHHHHHhh
Q 026486 128 SR-NFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQL 164 (238)
Q Consensus 128 ~~-~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~ 164 (238)
++ |.+++++ +|...+...+++.+++...+.+..
T Consensus 179 ~~~g~tiiiv----tH~~~~~~~~~d~i~~l~~G~i~~ 212 (354)
T TIGR02142 179 AEFGIPILYV----SHSLQEVLRLADRVVVLEDGRVAA 212 (354)
T ss_pred HhcCCEEEEE----ecCHHHHHHhCCEEEEEeCCEEEE
Confidence 64 7888877 488888778888776666555443
No 102
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.91 E-value=1.4e-24 Score=196.80 Aligned_cols=161 Identities=17% Similarity=0.177 Sum_probs=123.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeee----cCCC-----------CCCCC-------CCCCChhhhhh--
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL----DPAA-----------ENFDY-------PVAMDIRELIS-- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~----d~~~-----------~~~~~-------~~~~~i~~~i~-- 58 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|. ++.. ..++| .+..++++++.
T Consensus 51 ei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~~~ 130 (382)
T TIGR03415 51 EICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLTVEENVAFG 130 (382)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCCCcHHHHHHHH
Confidence 368999999999999999999999999999999985 3211 12333 34456777664
Q ss_pred --------------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHH
Q 026486 59 --------------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (238)
Q Consensus 59 --------------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ 121 (238)
+.++++.+|+.+..... ...++++++ +.||++|+. +|+++|+|||++ ||+.++..+. +
T Consensus 131 ~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~--~~~LSgGq~QRV~LARALa~--~P~ILLlDEPts~LD~~~r~~l~-~ 205 (382)
T TIGR03415 131 LEMQGMPEAERRKRVDEQLELVGLAQWADKK--PGELSGGMQQRVGLARAFAM--DADILLMDEPFSALDPLIRTQLQ-D 205 (382)
T ss_pred HHhcCCCHHHHHHHHHHHHHHcCCchhhcCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEECCCccCCHHHHHHHH-H
Confidence 45678888987543222 234666554 999999999 999999999999 9999999999 8
Q ss_pred HHHHHHhC-CCeEEEEEecccccccchhHHHhhhHHHHHHHHhhcCCeeeee
Q 026486 122 FVDHLKSR-NFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNIL 172 (238)
Q Consensus 122 ll~~l~~~-~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~~~p~~~vl 172 (238)
.+.+++++ +.|++++ +|.+.+..++++.+++...+.+....++-+++
T Consensus 206 ~L~~l~~~~~~TII~i----THdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 206 ELLELQAKLNKTIIFV----SHDLDEALKIGNRIAIMEGGRIIQHGTPEEIV 253 (382)
T ss_pred HHHHHHHhcCCEEEEE----eCCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 88888764 8899888 58888888888888777766665544443333
No 103
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.91 E-value=1e-24 Score=194.87 Aligned_cols=157 Identities=17% Similarity=0.203 Sum_probs=118.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC----------CCCCC---------CCCCChhhhhh------
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY---------PVAMDIRELIS------ 58 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~----------~~~~~---------~~~~~i~~~i~------ 58 (238)
+++|+|+||||||||+++|+|+++|++|+|.++|.++.. ..++| .+..++.+++.
T Consensus 49 ~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~ 128 (331)
T PRK15079 49 TLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTY 128 (331)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHh
Confidence 689999999999999999999999999999999987632 12333 23345655542
Q ss_pred ------------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHH
Q 026486 59 ------------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV 123 (238)
Q Consensus 59 ------------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll 123 (238)
+.++++.+++.+.....+. ..++++++ ++||++++. +|+++|+||||+ ||+.++.+++ +++
T Consensus 129 ~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p-~~LSgG~~QRv~iArAL~~--~P~llilDEPts~LD~~~~~~i~-~lL 204 (331)
T PRK15079 129 HPKLSRQEVKDRVKAMMLKVGLLPNLINRYP-HEFSGGQCQRIGIARALIL--EPKLIICDEPVSALDVSIQAQVV-NLL 204 (331)
T ss_pred ccCCCHHHHHHHHHHHHHHcCCChHHhcCCc-ccCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH-HHH
Confidence 4567888888542212222 34666554 999999999 999999999999 9999999999 999
Q ss_pred HHHHh-CCCeEEEEEecccccccchhHHHhhhHHHHHHHHhhcCCe
Q 026486 124 DHLKS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPH 168 (238)
Q Consensus 124 ~~l~~-~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~~~p~ 168 (238)
+++++ .|.++++| +|.+.....+++.++++..+.+....+.
T Consensus 205 ~~l~~~~~~til~i----THdl~~~~~~~dri~vl~~G~ive~g~~ 246 (331)
T PRK15079 205 QQLQREMGLSLIFI----AHDLAVVKHISDRVLVMYLGHAVELGTY 246 (331)
T ss_pred HHHHHHcCCEEEEE----eCCHHHHHHhCCEEEEEECCEEEEEcCH
Confidence 99976 48899888 5888888888887766655555444333
No 104
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.91 E-value=7.6e-24 Score=176.80 Aligned_cols=138 Identities=14% Similarity=0.087 Sum_probs=103.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC------CCCCC-------CCCCChhhhhh-----------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS----------- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~------~~~~~-------~~~~~i~~~i~----------- 58 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| .+..++.+++.
T Consensus 28 e~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~ 107 (204)
T PRK13538 28 ELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRLHGPGDD 107 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeCCccccCcCCcHHHHHHHHHHhcCccHH
Confidence 3689999999999999999999999999999999876532 11222 23456666553
Q ss_pred --HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeE
Q 026486 59 --LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNV 133 (238)
Q Consensus 59 --~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~tv 133 (238)
++++++.+|+.+.... ....++++++ ++||++++. +|+++++||||+ ||+.++..+. ++++++++++.++
T Consensus 108 ~~~~~~l~~~gl~~~~~~--~~~~LS~G~~qrl~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~ti 182 (204)
T PRK13538 108 EALWEALAQVGLAGFEDV--PVRQLSAGQQRRVALARLWLT--RAPLWILDEPFTAIDKQGVARLE-ALLAQHAEQGGMV 182 (204)
T ss_pred HHHHHHHHHcCCHHHhhC--ChhhcCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH-HHHHHHHHCCCEE
Confidence 4567888888643211 1234555543 899999999 999999999998 9999999999 9999887667888
Q ss_pred EEEEecccccccchhH
Q 026486 134 CAVYLLDSQFITDVTK 149 (238)
Q Consensus 134 i~v~l~d~~~~~d~~~ 149 (238)
+++ +|.......
T Consensus 183 ii~----sh~~~~i~~ 194 (204)
T PRK13538 183 ILT----THQDLPVAS 194 (204)
T ss_pred EEE----ecChhhhcc
Confidence 777 366554433
No 105
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.91 E-value=2.9e-24 Score=183.02 Aligned_cols=142 Identities=17% Similarity=0.253 Sum_probs=104.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC------CCCCC-C------CCCChhhhhh-----------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-P------VAMDIRELIS----------- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~------~~~~~-~------~~~~i~~~i~----------- 58 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| + +..++++++.
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~ 107 (236)
T TIGR03864 28 EFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRA 107 (236)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhcCCCHH
Confidence 3689999999999999999999999999999999876521 12333 1 2345555542
Q ss_pred -----HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-C
Q 026486 59 -----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-R 129 (238)
Q Consensus 59 -----~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~ 129 (238)
+.++++.+|+.+..... ...++++++ ++||++++. +|+++|+|||++ ||+.++..+. ++++++++ .
T Consensus 108 ~~~~~~~~~l~~~gl~~~~~~~--~~~LS~G~~qrl~laral~~--~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~~~ 182 (236)
T TIGR03864 108 EARERIAALLARLGLAERADDK--VRELNGGHRRRVEIARALLH--RPALLLLDEPTVGLDPASRAAIV-AHVRALCRDQ 182 (236)
T ss_pred HHHHHHHHHHHHcCChhhhcCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCccCCCHHHHHHHH-HHHHHHHHhC
Confidence 35667788886532221 234555543 899999999 999999999999 9999999999 88988874 5
Q ss_pred CCeEEEEEecccccccchhHHHhhh
Q 026486 130 NFNVCAVYLLDSQFITDVTKFISGC 154 (238)
Q Consensus 130 ~~tvi~v~l~d~~~~~d~~~~~~~~ 154 (238)
|.+++++ +|...+... ++.+
T Consensus 183 ~~tiii~----sH~~~~~~~-~d~i 202 (236)
T TIGR03864 183 GLSVLWA----THLVDEIEA-DDRL 202 (236)
T ss_pred CCEEEEE----ecChhhHhh-CCEE
Confidence 7888777 476665432 4433
No 106
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.91 E-value=4.7e-24 Score=176.14 Aligned_cols=158 Identities=16% Similarity=0.224 Sum_probs=109.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCC-----ceEEEeeecCCCC---------CCC--C----CCCCChhhhhh----
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVR-----RTMHIVNLDPAAE---------NFD--Y----PVAMDIRELIS---- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~-----G~i~i~~~d~~~~---------~~~--~----~~~~~i~~~i~---- 58 (238)
-++++|||+|||||||+|+++.+..... |+|.++|.++... .++ | |..++|+|++.
T Consensus 34 ~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPnPFp~SIydNVayG~r 113 (253)
T COG1117 34 KVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLR 113 (253)
T ss_pred ceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCCCCCchHHHHHHHhHH
Confidence 4789999999999999999999987764 9999999876431 111 1 22367888875
Q ss_pred ------------HHHHHHHcCCCCCC--chhhhHHhhhhhH--HHHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHH
Q 026486 59 ------------LEDVMEELGLGPNG--GLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (238)
Q Consensus 59 ------------~~~~l~~~~l~~~~--~~~~~~~~~~~~~--s~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ 121 (238)
++..++...|...- .+..+.-.+++++ ++.|||+++. +|++|++||||+ |||.+..++- +
T Consensus 114 ~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv--~PeVlLmDEPtSALDPIsT~kIE-e 190 (253)
T COG1117 114 LHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAV--KPEVLLMDEPTSALDPISTLKIE-E 190 (253)
T ss_pred hhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhc--CCcEEEecCcccccCchhHHHHH-H
Confidence 33444444432110 0000111244544 3899999999 999999999999 9999999988 9
Q ss_pred HHHHHHhCCCeEEEEEecccccccchhHHHhhhHHHHHHHHhhcCCe
Q 026486 122 FVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPH 168 (238)
Q Consensus 122 ll~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~~~p~ 168 (238)
++.+|+ +..||++|+ |.+...+...+...+...|.+.-..|.
T Consensus 191 Li~eLk-~~yTIviVT----HnmqQAaRvSD~taFf~~G~LvE~g~T 232 (253)
T COG1117 191 LITELK-KKYTIVIVT----HNMQQAARVSDYTAFFYLGELVEFGPT 232 (253)
T ss_pred HHHHHH-hccEEEEEe----CCHHHHHHHhHhhhhhcccEEEEEcCH
Confidence 999996 578999994 888777776665544444444333333
No 107
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=1.6e-24 Score=196.55 Aligned_cols=153 Identities=12% Similarity=0.076 Sum_probs=118.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-----CCCCC-------CCCCChhhhhh-------------
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDY-------PVAMDIRELIS------------- 58 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-----~~~~~-------~~~~~i~~~i~------------- 58 (238)
+++|+||||||||||+++|+|+.+|++|+|.++|.++.. +.++| ++.+++.+++.
T Consensus 47 ~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~ 126 (377)
T PRK11607 47 IFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEI 126 (377)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHH
Confidence 689999999999999999999999999999999987532 22333 44567777764
Q ss_pred ---HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CCC
Q 026486 59 ---LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNF 131 (238)
Q Consensus 59 ---~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~~ 131 (238)
+.++++.+++.+..... ...++++++ ++|||+++. +|++++||||++ ||...+..+. +.++++.+ .|.
T Consensus 127 ~~~v~~~l~~l~L~~~~~~~--~~~LSgGq~QRVaLARAL~~--~P~lLLLDEP~s~LD~~~r~~l~-~~l~~l~~~~g~ 201 (377)
T PRK11607 127 ASRVNEMLGLVHMQEFAKRK--PHQLSGGQRQRVALARSLAK--RPKLLLLDEPMGALDKKLRDRMQ-LEVVDILERVGV 201 (377)
T ss_pred HHHHHHHHHHcCCchhhcCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCC
Confidence 45678888887643322 234656543 999999999 999999999998 9999999988 77777654 588
Q ss_pred eEEEEEecccccccchhHHHhhhHHHHHHHHhhc
Q 026486 132 NVCAVYLLDSQFITDVTKFISGCMASLSAMVQLE 165 (238)
Q Consensus 132 tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~~ 165 (238)
|+|+| +|...+...+++.+++...+.+...
T Consensus 202 tii~v----THd~~ea~~laDri~vl~~G~i~~~ 231 (377)
T PRK11607 202 TCVMV----THDQEEAMTMAGRIAIMNRGKFVQI 231 (377)
T ss_pred EEEEE----cCCHHHHHHhCCEEEEEeCCEEEEE
Confidence 88888 5888888888887766655555433
No 108
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.91 E-value=1e-23 Score=177.36 Aligned_cols=143 Identities=15% Similarity=0.095 Sum_probs=109.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC----CCCCC-------CCCCChhhhhh-------------H
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----ENFDY-------PVAMDIRELIS-------------L 59 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~----~~~~~-------~~~~~i~~~i~-------------~ 59 (238)
+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| .+..++.+++. +
T Consensus 39 ~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~ 118 (214)
T PRK13543 39 ALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMP 118 (214)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEeecCcccccCCcHHHHHHHHHHhcCCcHHHHH
Confidence 689999999999999999999999999999999876531 12333 22346666552 3
Q ss_pred HHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 026486 60 EDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (238)
Q Consensus 60 ~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~tvi~v 136 (238)
.++++.+++.+..... ...++++++ +++|++++. +|+++++|||++ ||+.+++.+. ++++++.++|.+++++
T Consensus 119 ~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~tiii~ 193 (214)
T PRK13543 119 GSALAIVGLAGYEDTL--VRQLSAGQKKRLALARLWLS--PAPLWLLDEPYANLDLEGITLVN-RMISAHLRGGGAALVT 193 (214)
T ss_pred HHHHHHcCChhhccCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHhCCCEEEEE
Confidence 4567778876432221 234555543 899999999 999999999999 9999999998 8998887778888777
Q ss_pred EecccccccchhHHHhhhH
Q 026486 137 YLLDSQFITDVTKFISGCM 155 (238)
Q Consensus 137 ~l~d~~~~~d~~~~~~~~l 155 (238)
+|...+...+++.++
T Consensus 194 ----sH~~~~~~~~~~~i~ 208 (214)
T PRK13543 194 ----THGAYAAPPVRTRML 208 (214)
T ss_pred ----ecChhhhhhhcceEE
Confidence 588887777776543
No 109
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.91 E-value=9.3e-25 Score=189.62 Aligned_cols=150 Identities=17% Similarity=0.190 Sum_probs=109.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-------CCCCC-CC--------CCChhhhh---------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV--------AMDIRELI--------- 57 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~--------~~~i~~~i--------- 57 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| ++ ..++.+++
T Consensus 40 e~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~ 119 (267)
T PRK15112 40 QTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTD 119 (267)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccC
Confidence 3689999999999999999999999999999999876531 12333 22 12222222
Q ss_pred --------hHHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 026486 58 --------SLEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (238)
Q Consensus 58 --------~~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l 126 (238)
.+.++++.+|+.+...... ...++++++ ++||++++. +|+++|||||++ ||+.++..+. ++++++
T Consensus 120 ~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~LS~G~~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~~ 195 (267)
T PRK15112 120 LEPEQREKQIIETLRQVGLLPDHASYY-PHMLAPGQKQRLGLARALIL--RPKVIIADEALASLDMSMRSQLI-NLMLEL 195 (267)
T ss_pred CCHHHHHHHHHHHHHHcCCChHHHhcC-chhcCHHHHHHHHHHHHHHh--CCCEEEEcCCcccCCHHHHHHHH-HHHHHH
Confidence 1456788888853221111 234555544 899999999 999999999999 9999999998 989998
Q ss_pred Hh-CCCeEEEEEecccccccchhHHHhhhHHHHHH
Q 026486 127 KS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSA 160 (238)
Q Consensus 127 ~~-~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~ 160 (238)
.+ .|.++|++ +|...+...+++.+++...+
T Consensus 196 ~~~~g~tviiv----sH~~~~~~~~~d~i~~l~~G 226 (267)
T PRK15112 196 QEKQGISYIYV----TQHLGMMKHISDQVLVMHQG 226 (267)
T ss_pred HHHcCcEEEEE----eCCHHHHHHhcCEEEEEECC
Confidence 76 47888777 48887777777755444333
No 110
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.91 E-value=3.2e-24 Score=183.24 Aligned_cols=146 Identities=16% Similarity=0.195 Sum_probs=109.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC--------CCCCC-------CCCCChhhhhh---------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-------PVAMDIRELIS--------- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~--------~~~~~-------~~~~~i~~~i~--------- 58 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| ++..++++++.
T Consensus 29 e~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~ 108 (242)
T TIGR03411 29 ELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSV 108 (242)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhhccccc
Confidence 3689999999999999999999999999999999976532 12333 22345555432
Q ss_pred ---------------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHH
Q 026486 59 ---------------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (238)
Q Consensus 59 ---------------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~ 120 (238)
+.++++.+|+.+..... ...++++.+ ++||++++. +|+++++||||+ ||+.++..++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~Ge~qrv~laral~~--~p~~lllDEPt~~LD~~~~~~l~- 183 (242)
T TIGR03411 109 FASLFFRLSAEEKDRIEEVLETIGLADEADRL--AGLLSHGQKQWLEIGMLLMQ--DPKLLLLDEPVAGMTDEETEKTA- 183 (242)
T ss_pred ccccccccHHHHHHHHHHHHHHcCCchhhcCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEecCCccCCCHHHHHHHH-
Confidence 34567777886532211 234555543 899999999 999999999999 9999999999
Q ss_pred HHHHHHHhCCCeEEEEEecccccccchhHHHhhhHHHH
Q 026486 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASL 158 (238)
Q Consensus 121 ~ll~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~ 158 (238)
++++++.+ +.++|++ +|...+...+++.+++..
T Consensus 184 ~~l~~~~~-~~tii~~----sH~~~~~~~~~d~i~~l~ 216 (242)
T TIGR03411 184 ELLKSLAG-KHSVVVV----EHDMEFVRSIADKVTVLH 216 (242)
T ss_pred HHHHHHhc-CCEEEEE----ECCHHHHHHhCCEEEEEE
Confidence 99999865 6788777 588877777777554433
No 111
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=9.5e-25 Score=190.35 Aligned_cols=156 Identities=13% Similarity=0.155 Sum_probs=117.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC---------CCCCC-CC-------CCChhhhhh-------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------ENFDY-PV-------AMDIRELIS------- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~---------~~~~~-~~-------~~~i~~~i~------- 58 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| ++ ..++++++.
T Consensus 29 e~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~~ 108 (275)
T PRK13639 29 EMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLG 108 (275)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHcC
Confidence 3689999999999999999999999999999999977521 12333 22 125555543
Q ss_pred ---------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 026486 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (238)
Q Consensus 59 ---------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l 126 (238)
+.++++.+++.+..... ...++++++ ++||++++. +|+++|+||||+ ||+.++..++ ++++++
T Consensus 109 ~~~~~~~~~~~~~l~~~~L~~~~~~~--~~~LS~Gq~qrv~laral~~--~p~llllDEPt~gLD~~~~~~l~-~~l~~l 183 (275)
T PRK13639 109 LSKEEVEKRVKEALKAVGMEGFENKP--PHHLSGGQKKRVAIAGILAM--KPEIIVLDEPTSGLDPMGASQIM-KLLYDL 183 (275)
T ss_pred CCHHHHHHHHHHHHHHCCCchhhcCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCcCCCHHHHHHHH-HHHHHH
Confidence 44677888886543222 234555543 899999999 999999999999 9999999999 999998
Q ss_pred HhCCCeEEEEEecccccccchhHHHhhhHHHHHHHHhhcCC
Q 026486 127 KSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELP 167 (238)
Q Consensus 127 ~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~~~p 167 (238)
+++|.+++++ +|...+...+++.+++...+.+....+
T Consensus 184 ~~~~~til~v----tH~~~~~~~~~d~i~~l~~G~i~~~g~ 220 (275)
T PRK13639 184 NKEGITIIIS----THDVDLVPVYADKVYVMSDGKIIKEGT 220 (275)
T ss_pred HHCCCEEEEE----ecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 7668888888 488887778888776665555544333
No 112
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.91 E-value=1.1e-24 Score=184.40 Aligned_cols=151 Identities=17% Similarity=0.205 Sum_probs=109.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCC-----cCCCceEEEeeecCCC---------CCCCC-CC-----CCChhhhhh----
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHC-----ETVRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELIS---- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l-----~~~~G~i~i~~~d~~~---------~~~~~-~~-----~~~i~~~i~---- 58 (238)
-+++|+||||||||||+++|+|++ +|++|+|.++|.++.. ..++| ++ ..++++++.
T Consensus 27 e~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~ 106 (227)
T cd03260 27 EITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLR 106 (227)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecCchhccccHHHHHHhHHH
Confidence 368999999999999999999999 9999999999976421 12333 22 245555542
Q ss_pred -------------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHH
Q 026486 59 -------------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (238)
Q Consensus 59 -------------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~l 122 (238)
+.++++.+|+.+..........++++++ ++||++++. +|+++|+||||+ ||+.++..++ ++
T Consensus 107 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~ 183 (227)
T cd03260 107 LHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALAN--EPEVLLLDEPTSALDPISTAKIE-EL 183 (227)
T ss_pred hcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH-HH
Confidence 3456777788643211110134555543 899999999 999999999999 9999999999 99
Q ss_pred HHHHHhCCCeEEEEEecccccccchhHHHhhhHHHHHHH
Q 026486 123 VDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAM 161 (238)
Q Consensus 123 l~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~ 161 (238)
+++++++ .++|++ +|.......+++.++....+.
T Consensus 184 l~~~~~~-~tii~~----sH~~~~~~~~~d~i~~l~~G~ 217 (227)
T cd03260 184 IAELKKE-YTIVIV----THNMQQAARVADRTAFLLNGR 217 (227)
T ss_pred HHHHhhC-cEEEEE----eccHHHHHHhCCEEEEEeCCE
Confidence 9998766 777777 487776667777555444443
No 113
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.91 E-value=5.9e-24 Score=177.21 Aligned_cols=134 Identities=18% Similarity=0.176 Sum_probs=102.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCC-----------CCCCCC-------CCCCChhhhhh------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----------AENFDY-------PVAMDIRELIS------ 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~-----------~~~~~~-------~~~~~i~~~i~------ 58 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.++. ...++| ++..++++++.
T Consensus 25 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~ 104 (206)
T TIGR03608 25 KMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYK 104 (206)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhccCCcHHHHHHHHHHhc
Confidence 368999999999999999999999999999999998732 112333 22356665543
Q ss_pred ----------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 026486 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (238)
Q Consensus 59 ----------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~ 125 (238)
+.++++.+|+++..... ...++++++ +.||++++. +|+++|+|||++ ||+.++..+. +++++
T Consensus 105 ~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~lS~G~~qr~~laral~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~ 179 (206)
T TIGR03608 105 KLSKKEKREKKKEALEKVGLNLKLKQK--IYELSGGEQQRVALARAILK--DPPLILADEPTGSLDPKNRDEVL-DLLLE 179 (206)
T ss_pred CCCHHHHHHHHHHHHHHcCchhhhcCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEeCCcCCCCHHHHHHHH-HHHHH
Confidence 45678888886432221 234555543 899999999 999999999999 9999999999 99999
Q ss_pred HHhCCCeEEEEEeccccccc
Q 026486 126 LKSRNFNVCAVYLLDSQFIT 145 (238)
Q Consensus 126 l~~~~~tvi~v~l~d~~~~~ 145 (238)
+.++|.+++++ +|...
T Consensus 180 ~~~~~~tii~~----sh~~~ 195 (206)
T TIGR03608 180 LNDEGKTIIIV----THDPE 195 (206)
T ss_pred HHhcCCEEEEE----eCCHH
Confidence 87668888777 36654
No 114
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=1e-24 Score=190.95 Aligned_cols=157 Identities=13% Similarity=0.133 Sum_probs=119.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC---------CCCCC-CC-------CCChhhhhh-------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------ENFDY-PV-------AMDIRELIS------- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~---------~~~~~-~~-------~~~i~~~i~------- 58 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..++| ++ ..++++++.
T Consensus 33 e~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~ 112 (283)
T PRK13636 33 EVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLK 112 (283)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHcC
Confidence 3689999999999999999999999999999999987521 12333 22 235555553
Q ss_pred ---------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 026486 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (238)
Q Consensus 59 ---------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l 126 (238)
+.++++.+|+.+..... ...++++++ +.||++++. +|+++|+|||++ ||+.++..++ ++++++
T Consensus 113 ~~~~~~~~~~~~~l~~~gL~~~~~~~--~~~LS~G~~qrl~laraL~~--~p~lLilDEPt~gLD~~~~~~l~-~~l~~l 187 (283)
T PRK13636 113 LPEDEVRKRVDNALKRTGIEHLKDKP--THCLSFGQKKRVAIAGVLVM--EPKVLVLDEPTAGLDPMGVSEIM-KLLVEM 187 (283)
T ss_pred CCHHHHHHHHHHHHHHCCChhhhhCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEeCCccCCCHHHHHHHH-HHHHHH
Confidence 45667888886532222 234555544 899999999 999999999999 9999999999 999998
Q ss_pred HhC-CCeEEEEEecccccccchhHHHhhhHHHHHHHHhhcCCe
Q 026486 127 KSR-NFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPH 168 (238)
Q Consensus 127 ~~~-~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~~~p~ 168 (238)
+++ |.|++++ +|.+.+...+++.+++...+.+....+.
T Consensus 188 ~~~~g~tillv----sH~~~~~~~~~dri~~l~~G~i~~~g~~ 226 (283)
T PRK13636 188 QKELGLTIIIA----THDIDIVPLYCDNVFVMKEGRVILQGNP 226 (283)
T ss_pred HHhCCCEEEEE----ecCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 764 8888887 5888888888887777666665544444
No 115
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.91 E-value=2.4e-24 Score=182.76 Aligned_cols=145 Identities=17% Similarity=0.210 Sum_probs=105.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC--------CCCCC-C------CCCChhhhhh---------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-P------VAMDIRELIS--------- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~--------~~~~~-~------~~~~i~~~i~--------- 58 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..++| + +..++.+++.
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~ 106 (230)
T TIGR03410 27 EVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAALPRR 106 (230)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHHhcCcc
Confidence 4689999999999999999999999999999999876421 22344 2 2345666553
Q ss_pred ----HHHHHHHcC-CCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC-
Q 026486 59 ----LEDVMEELG-LGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR- 129 (238)
Q Consensus 59 ----~~~~l~~~~-l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~- 129 (238)
..++++.++ ++.... .....++++++ ++||++++. +|+++++||||+ ||+.++..+. +++++++++
T Consensus 107 ~~~~~~~~l~~~~~l~~~~~--~~~~~LS~G~~qrv~la~al~~--~p~illlDEPt~~LD~~~~~~l~-~~l~~~~~~~ 181 (230)
T TIGR03410 107 SRKIPDEIYELFPVLKEMLG--RRGGDLSGGQQQQLAIARALVT--RPKLLLLDEPTEGIQPSIIKDIG-RVIRRLRAEG 181 (230)
T ss_pred hHHHHHHHHHHHHhHHHHhh--CChhhCCHHHHHHHHHHHHHhc--CCCEEEecCCcccCCHHHHHHHH-HHHHHHHHcC
Confidence 233454444 222111 11233555543 899999999 999999999999 9999999999 889888764
Q ss_pred CCeEEEEEecccccccchhHHHhhhHH
Q 026486 130 NFNVCAVYLLDSQFITDVTKFISGCMA 156 (238)
Q Consensus 130 ~~tvi~v~l~d~~~~~d~~~~~~~~l~ 156 (238)
+.+++++ +|.......+++.+++
T Consensus 182 ~~tii~~----sH~~~~~~~~~d~v~~ 204 (230)
T TIGR03410 182 GMAILLV----EQYLDFARELADRYYV 204 (230)
T ss_pred CcEEEEE----eCCHHHHHHhCCEEEE
Confidence 7888777 4877766666664443
No 116
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.91 E-value=2.9e-24 Score=180.42 Aligned_cols=145 Identities=19% Similarity=0.265 Sum_probs=107.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-----CCCCC-------CCCCChhhhhh------------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDY-------PVAMDIRELIS------------ 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-----~~~~~-------~~~~~i~~~i~------------ 58 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| ++..++.+++.
T Consensus 25 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~ 104 (213)
T TIGR01277 25 EIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGLKLNAE 104 (213)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHHhHhhccCCccHH
Confidence 4689999999999999999999999999999999976531 22333 22345555542
Q ss_pred ----HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CC
Q 026486 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RN 130 (238)
Q Consensus 59 ----~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~ 130 (238)
+.++++.+|+.+..... ...++++++ ++||++++. +|+++++||||+ ||+.++..+. ++++++.+ .+
T Consensus 105 ~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrl~laral~~--~p~llllDEPt~~LD~~~~~~~~-~~l~~~~~~~~ 179 (213)
T TIGR01277 105 QQEKVVDAAQQVGIADYLDRL--PEQLSGGQRQRVALARCLVR--PNPILLLDEPFSALDPLLREEML-ALVKQLCSERQ 179 (213)
T ss_pred HHHHHHHHHHHcCcHHHhhCC--cccCCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHHHHHH-HHHHHHHHhcC
Confidence 34567788886432111 234555543 899999999 999999999999 9999999999 99998875 47
Q ss_pred CeEEEEEecccccccchhHHHhhhHH
Q 026486 131 FNVCAVYLLDSQFITDVTKFISGCMA 156 (238)
Q Consensus 131 ~tvi~v~l~d~~~~~d~~~~~~~~l~ 156 (238)
.+++++ +|...+...+++.+++
T Consensus 180 ~tii~v----sh~~~~~~~~~d~v~~ 201 (213)
T TIGR01277 180 RTLLMV----THHLSDARAIASQIAV 201 (213)
T ss_pred CEEEEE----eCCHHHHHhhcCeEEE
Confidence 888777 4777766666665543
No 117
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=1.6e-24 Score=184.20 Aligned_cols=146 Identities=16% Similarity=0.239 Sum_probs=108.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-----CCCCC-C------CCCChhhhhh------------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDY-P------VAMDIRELIS------------ 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-----~~~~~-~------~~~~i~~~i~------------ 58 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..++| + +..++.+++.
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~ 105 (232)
T PRK10771 26 ERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAA 105 (232)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhcccccccCCCHH
Confidence 3689999999999999999999999999999999976431 12333 2 2345555442
Q ss_pred ----HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CC
Q 026486 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RN 130 (238)
Q Consensus 59 ----~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~ 130 (238)
+.++++.+|+.+..... ...++++++ +.||++++. +|+++|+|||++ ||+.++..+. ++++++.+ .|
T Consensus 106 ~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~laral~~--~p~lllLDEP~~gLD~~~~~~~~-~~l~~~~~~~~ 180 (232)
T PRK10771 106 QREKLHAIARQMGIEDLLARL--PGQLSGGQRQRVALARCLVR--EQPILLLDEPFSALDPALRQEML-TLVSQVCQERQ 180 (232)
T ss_pred HHHHHHHHHHHcCcHHHHhCC--cccCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcC
Confidence 45567777775432111 134555543 899999999 999999999999 9999999999 98988865 47
Q ss_pred CeEEEEEecccccccchhHHHhhhHHH
Q 026486 131 FNVCAVYLLDSQFITDVTKFISGCMAS 157 (238)
Q Consensus 131 ~tvi~v~l~d~~~~~d~~~~~~~~l~~ 157 (238)
.+++++ +|...+...+++.++..
T Consensus 181 ~tiii~----sH~~~~~~~~~d~i~~l 203 (232)
T PRK10771 181 LTLLMV----SHSLEDAARIAPRSLVV 203 (232)
T ss_pred CEEEEE----ECCHHHHHHhCCEEEEE
Confidence 888877 48887766776655443
No 118
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=2.9e-24 Score=183.59 Aligned_cols=146 Identities=18% Similarity=0.223 Sum_probs=109.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCC-------------CCCCCC-C------CCCChhhhhh----
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-------------AENFDY-P------VAMDIRELIS---- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~-------------~~~~~~-~------~~~~i~~~i~---- 58 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.++. ...+.| + +..++.+++.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~ 108 (242)
T PRK11124 29 ETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPC 108 (242)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHH
Confidence 368999999999999999999999999999999998641 112333 2 2346666542
Q ss_pred -------------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHH
Q 026486 59 -------------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (238)
Q Consensus 59 -------------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~l 122 (238)
+.++++.+|+.+..... ...++++++ ++||++++. +|+++|+|||++ ||+.++..+. ++
T Consensus 109 ~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~--~~~LS~G~~qrv~laral~~--~p~llilDEPt~~LD~~~~~~l~-~~ 183 (242)
T PRK11124 109 RVLGLSKDQALARAEKLLERLRLKPYADRF--PLHLSGGQQQRVAIARALMM--EPQVLLFDEPTAALDPEITAQIV-SI 183 (242)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCChhhhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCCCcCCHHHHHHHH-HH
Confidence 34567778886532221 234555543 899999999 999999999999 9999999999 89
Q ss_pred HHHHHhCCCeEEEEEecccccccchhHHHhhhHHH
Q 026486 123 VDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMAS 157 (238)
Q Consensus 123 l~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~ 157 (238)
+++++++|.+++++ +|...+...+++.++..
T Consensus 184 l~~~~~~~~tii~~----sh~~~~~~~~~d~i~~l 214 (242)
T PRK11124 184 IRELAETGITQVIV----THEVEVARKTASRVVYM 214 (242)
T ss_pred HHHHHHcCCEEEEE----eCCHHHHHHhcCEEEEE
Confidence 99987668888777 48777666666644433
No 119
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.91 E-value=2.4e-24 Score=182.36 Aligned_cols=145 Identities=14% Similarity=0.252 Sum_probs=108.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC--CCCCC-CC--------CCChhhhh--------------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--ENFDY-PV--------AMDIRELI-------------- 57 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~--~~~~~-~~--------~~~i~~~i-------------- 57 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| ++ ..++.+++
T Consensus 7 e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~ 86 (223)
T TIGR03771 7 ELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHIGWLRRP 86 (223)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccccccccccCC
Confidence 3689999999999999999999999999999999976521 22333 11 12344332
Q ss_pred ------hHHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 026486 58 ------SLEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (238)
Q Consensus 58 ------~~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (238)
.+.++++.+++.+..... ...++++++ ++||++++. +|+++|+|||++ ||+.++..+. ++++++++
T Consensus 87 ~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~laral~~--~p~llilDEP~~~LD~~~~~~l~-~~l~~~~~ 161 (223)
T TIGR03771 87 CVADFAAVRDALRRVGLTELADRP--VGELSGGQRQRVLVARALAT--RPSVLLLDEPFTGLDMPTQELLT-ELFIELAG 161 (223)
T ss_pred cHHHHHHHHHHHHHhCCchhhcCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHH
Confidence 145667888887543222 234555543 899999999 999999999999 9999999999 88998876
Q ss_pred CCCeEEEEEecccccccchhHHHhhhHH
Q 026486 129 RNFNVCAVYLLDSQFITDVTKFISGCMA 156 (238)
Q Consensus 129 ~~~tvi~v~l~d~~~~~d~~~~~~~~l~ 156 (238)
+|.++|++ +|...+...+++.+++
T Consensus 162 ~~~tvii~----sH~~~~~~~~~d~i~~ 185 (223)
T TIGR03771 162 AGTAILMT----THDLAQAMATCDRVVL 185 (223)
T ss_pred cCCEEEEE----eCCHHHHHHhCCEEEE
Confidence 78888888 4877777777765543
No 120
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.91 E-value=2.2e-24 Score=186.34 Aligned_cols=149 Identities=18% Similarity=0.259 Sum_probs=110.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-------CCCCC-C------CCCChhhhhh----------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-P------VAMDIRELIS---------- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~------~~~~i~~~i~---------- 58 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..++| + +..++++++.
T Consensus 29 e~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~ 108 (258)
T PRK13548 29 EVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSR 108 (258)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhcccCCCc
Confidence 3689999999999999999999999999999999976421 12333 1 2345665542
Q ss_pred ------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHh------ccCCCCEEEEeCCCc-ccHHhHHHHHHHHH
Q 026486 59 ------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELD------NYLDDDYLVFDCPGQ-IELFTHVPVLRNFV 123 (238)
Q Consensus 59 ------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~------~~~~p~~lilDEPt~-LD~~~~~~~~~~ll 123 (238)
+.++++.+++....... ...++++++ ++||++++ . +|+++++||||+ ||+.++..+. +++
T Consensus 109 ~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgGe~qrv~la~al~~~~~~~~--~p~lllLDEPt~~LD~~~~~~l~-~~l 183 (258)
T PRK13548 109 AEDDALVAAALAQVDLAHLAGRD--YPQLSGGEQQRVQLARVLAQLWEPDG--PPRWLLLDEPTSALDLAHQHHVL-RLA 183 (258)
T ss_pred HHHHHHHHHHHHHcCCHhHhcCC--cccCCHHHHHHHHHHHHHhcccccCC--CCCEEEEeCCcccCCHHHHHHHH-HHH
Confidence 34567777876432111 234555543 89999999 6 899999999999 9999999999 999
Q ss_pred HHHH-hCCCeEEEEEecccccccchhHHHhhhHHHHHH
Q 026486 124 DHLK-SRNFNVCAVYLLDSQFITDVTKFISGCMASLSA 160 (238)
Q Consensus 124 ~~l~-~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~ 160 (238)
+++. +.|.+++++ +|.......+++.++....+
T Consensus 184 ~~~~~~~~~tiii~----sH~~~~~~~~~d~i~~l~~G 217 (258)
T PRK13548 184 RQLAHERGLAVIVV----LHDLNLAARYADRIVLLHQG 217 (258)
T ss_pred HHHHHhcCCEEEEE----ECCHHHHHHhcCEEEEEECC
Confidence 9887 568888777 48887777777755444333
No 121
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1.1e-24 Score=186.42 Aligned_cols=148 Identities=17% Similarity=0.222 Sum_probs=109.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-------CCCCC-CCC-----CChhhhhh------------
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PVA-----MDIRELIS------------ 58 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~~-----~~i~~~i~------------ 58 (238)
+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| +++ .++++++.
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~ 110 (241)
T PRK14250 31 IYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPMLKGEKNVD 110 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEEecCchhchhhHHHHHhcchhhcCcHHHH
Confidence 689999999999999999999999999999999976521 22333 221 24555442
Q ss_pred HHHHHHHcCCCC-CCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CCCeE
Q 026486 59 LEDVMEELGLGP-NGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNV 133 (238)
Q Consensus 59 ~~~~l~~~~l~~-~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~~tv 133 (238)
+.++++.+++.+ .... ....++++++ +.||++++. +|+++|+|||++ ||+.++..+. ++++++++ .|.++
T Consensus 111 ~~~~l~~~~l~~~~~~~--~~~~LS~G~~qrl~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~g~ti 185 (241)
T PRK14250 111 VEYYLSIVGLNKEYATR--DVKNLSGGEAQRVSIARTLAN--NPEVLLLDEPTSALDPTSTEIIE-ELIVKLKNKMNLTV 185 (241)
T ss_pred HHHHHHHcCCCHHHhhC--CcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhCCCEE
Confidence 456788888852 2111 1234555543 899999999 999999999999 9999999998 88998876 48888
Q ss_pred EEEEecccccccchhHHHhhhHHHHHH
Q 026486 134 CAVYLLDSQFITDVTKFISGCMASLSA 160 (238)
Q Consensus 134 i~v~l~d~~~~~d~~~~~~~~l~~~~~ 160 (238)
+++ +|...+...+++.+++...+
T Consensus 186 i~~----sH~~~~~~~~~d~i~~l~~G 208 (241)
T PRK14250 186 IWI----THNMEQAKRIGDYTAFLNKG 208 (241)
T ss_pred EEE----eccHHHHHHhCCEEEEEeCC
Confidence 877 48887777777755544433
No 122
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=2.8e-24 Score=187.56 Aligned_cols=156 Identities=16% Similarity=0.150 Sum_probs=118.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-------CCCCC-CC-------CCChhhhhh---------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-------AMDIRELIS--------- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~-------~~~i~~~i~--------- 58 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| ++ ..++.+++.
T Consensus 31 e~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~ 110 (277)
T PRK13652 31 SRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLD 110 (277)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEEEecCcccccccccHHHHHHhHHHHcCCC
Confidence 4689999999999999999999999999999999987532 12333 11 235565553
Q ss_pred -------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 026486 59 -------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (238)
Q Consensus 59 -------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (238)
+.++++.+++.+..... ...++++++ ++||++++. +|+++|+||||+ ||+.++..+. ++++++++
T Consensus 111 ~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~Gq~qrl~laraL~~--~p~llilDEPt~gLD~~~~~~l~-~~l~~l~~ 185 (277)
T PRK13652 111 EETVAHRVSSALHMLGLEELRDRV--PHHLSGGEKKRVAIAGVIAM--EPQVLVLDEPTAGLDPQGVKELI-DFLNDLPE 185 (277)
T ss_pred HHHHHHHHHHHHHHCCChhHhcCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHH
Confidence 45667788886532222 234555544 899999999 999999999999 9999999999 99999876
Q ss_pred C-CCeEEEEEecccccccchhHHHhhhHHHHHHHHhhcCC
Q 026486 129 R-NFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELP 167 (238)
Q Consensus 129 ~-~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~~~p 167 (238)
+ |.|++++ +|...+...+++.+++...+.+....+
T Consensus 186 ~~g~tvli~----tH~~~~~~~~~drv~~l~~G~i~~~g~ 221 (277)
T PRK13652 186 TYGMTVIFS----THQLDLVPEMADYIYVMDKGRIVAYGT 221 (277)
T ss_pred hcCCEEEEE----ecCHHHHHHhCCEEEEEECCeEEEECC
Confidence 4 8888777 588888888888777766666554433
No 123
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.91 E-value=4.3e-24 Score=180.60 Aligned_cols=146 Identities=16% Similarity=0.201 Sum_probs=106.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC----------CCCCC---------CCCCChhhhhh-----
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY---------PVAMDIRELIS----- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~----------~~~~~---------~~~~~i~~~i~----- 58 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| .+..++++++.
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~ 111 (228)
T cd03257 32 ETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRI 111 (228)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHh
Confidence 3689999999999999999999999999999999976531 12333 12345555542
Q ss_pred -------------HHHHHHHcCCCC-CCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHH
Q 026486 59 -------------LEDVMEELGLGP-NGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (238)
Q Consensus 59 -------------~~~~l~~~~l~~-~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ 121 (238)
+.++++.+++.. .... ....++++++ ++||++++. +|+++|+||||+ ||+.++..+. +
T Consensus 112 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~~LS~G~~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l~-~ 186 (228)
T cd03257 112 HGKLSKKEARKEAVLLLLVGVGLPEEVLNR--YPHELSGGQRQRVAIARALAL--NPKLLIADEPTSALDVSVQAQIL-D 186 (228)
T ss_pred ccCCcHHHHHHHHHHHHHHHCCCChhHhhC--CchhcCHHHHHHHHHHHHHhc--CCCEEEecCCCCCCCHHHHHHHH-H
Confidence 124556777742 1111 1234555543 899999999 999999999999 9999999999 9
Q ss_pred HHHHHHhC-CCeEEEEEecccccccchhHHHhhhHHH
Q 026486 122 FVDHLKSR-NFNVCAVYLLDSQFITDVTKFISGCMAS 157 (238)
Q Consensus 122 ll~~l~~~-~~tvi~v~l~d~~~~~d~~~~~~~~l~~ 157 (238)
+++++.++ |.++|++ +|.......+++.++..
T Consensus 187 ~l~~~~~~~~~tii~~----sH~~~~~~~~~d~i~~l 219 (228)
T cd03257 187 LLKKLQEELGLTLLFI----THDLGVVAKIADRVAVM 219 (228)
T ss_pred HHHHHHHHcCCEEEEE----eCCHHHHHHhcCeEEEE
Confidence 99988765 7888777 48777666666655443
No 124
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.91 E-value=3.7e-24 Score=185.58 Aligned_cols=148 Identities=16% Similarity=0.198 Sum_probs=109.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC----------CCCCC---------CCCCChhhhhh-----
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY---------PVAMDIRELIS----- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~----------~~~~~---------~~~~~i~~~i~----- 58 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. +.++| .+..++++++.
T Consensus 38 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~ 117 (265)
T TIGR02769 38 ETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRH 117 (265)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHH
Confidence 3689999999999999999999999999999999976531 12333 22345555431
Q ss_pred ------------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHH
Q 026486 59 ------------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV 123 (238)
Q Consensus 59 ------------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll 123 (238)
+.++++.+|+....... ....++++++ ++||++++. +|+++|+|||++ ||+.++..+. +++
T Consensus 118 ~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~~LSgGe~qrv~laral~~--~p~illLDEPt~~LD~~~~~~l~-~~l 193 (265)
T TIGR02769 118 LTSLDESEQKARIAELLDMVGLRSEDADK-LPRQLSGGQLQRINIARALAV--KPKLIVLDEAVSNLDMVLQAVIL-ELL 193 (265)
T ss_pred hcCCCHHHHHHHHHHHHHHcCCChhhhhC-ChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHH
Confidence 45677888885311111 1234555543 899999999 999999999999 9999999999 889
Q ss_pred HHHHhC-CCeEEEEEecccccccchhHHHhhhHHHH
Q 026486 124 DHLKSR-NFNVCAVYLLDSQFITDVTKFISGCMASL 158 (238)
Q Consensus 124 ~~l~~~-~~tvi~v~l~d~~~~~d~~~~~~~~l~~~ 158 (238)
+++.+. |.++|++ +|.......+++.+++..
T Consensus 194 ~~~~~~~g~tiiiv----sH~~~~~~~~~d~i~~l~ 225 (265)
T TIGR02769 194 RKLQQAFGTAYLFI----THDLRLVQSFCQRVAVMD 225 (265)
T ss_pred HHHHHhcCcEEEEE----eCCHHHHHHHhcEEEEEe
Confidence 988764 8888877 488777777766554433
No 125
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=2.5e-24 Score=183.53 Aligned_cols=146 Identities=16% Similarity=0.207 Sum_probs=105.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC--------CCCCC-C------CCCChhhhhh---------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-P------VAMDIRELIS--------- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~--------~~~~~-~------~~~~i~~~i~--------- 58 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..++| + +..++.+++.
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~ 111 (237)
T PRK11614 32 EIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERD 111 (237)
T ss_pred cEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhccChh
Confidence 4689999999999999999999999999999999976422 12333 2 2345665543
Q ss_pred -----HHHHHHHc-CCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC
Q 026486 59 -----LEDVMEEL-GLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR 129 (238)
Q Consensus 59 -----~~~~l~~~-~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~ 129 (238)
+.++++.+ ++.+.. ......++++++ ++||++++. +|+++|+||||+ ||+.++..+. +++++++++
T Consensus 112 ~~~~~~~~~l~~~~~l~~~~--~~~~~~LS~G~~qrl~la~al~~--~p~illlDEPt~~LD~~~~~~l~-~~l~~~~~~ 186 (237)
T PRK11614 112 QFQERIKWVYELFPRLHERR--IQRAGTMSGGEQQMLAIGRALMS--QPRLLLLDEPSLGLAPIIIQQIF-DTIEQLREQ 186 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHH--hCchhhCCHHHHHHHHHHHHHHh--CCCEEEEcCccccCCHHHHHHHH-HHHHHHHHC
Confidence 22334444 233211 111234555543 899999999 999999999999 9999999999 889988777
Q ss_pred CCeEEEEEecccccccchhHHHhhhHHH
Q 026486 130 NFNVCAVYLLDSQFITDVTKFISGCMAS 157 (238)
Q Consensus 130 ~~tvi~v~l~d~~~~~d~~~~~~~~l~~ 157 (238)
|.++|++ +|...+..++++.+++.
T Consensus 187 ~~tiii~----sH~~~~~~~~~d~i~~l 210 (237)
T PRK11614 187 GMTIFLV----EQNANQALKLADRGYVL 210 (237)
T ss_pred CCEEEEE----eCcHHHHHhhCCEEEEE
Confidence 8888777 48777777777755443
No 126
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.91 E-value=2.6e-23 Score=172.71 Aligned_cols=130 Identities=19% Similarity=0.132 Sum_probs=99.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC------CCCCC-------CCCCChhhhhh-----------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS----------- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~------~~~~~-------~~~~~i~~~i~----------- 58 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| .+..++.+++.
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~ 106 (198)
T TIGR01189 27 EALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELSALENLHFWAAIHGGAQR 106 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEeccCcccccCCcHHHHHHHHHHHcCCcHH
Confidence 3689999999999999999999999999999999976421 12233 22356666553
Q ss_pred -HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEE
Q 026486 59 -LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVC 134 (238)
Q Consensus 59 -~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~tvi 134 (238)
+.++++.+++.+.... ....++++++ ++||++++. +|+++++||||+ ||+.++..++ +++++++++|.+++
T Consensus 107 ~~~~~l~~~~l~~~~~~--~~~~LS~G~~qrv~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~tii 181 (198)
T TIGR01189 107 TIEDALAAVGLTGFEDL--PAAQLSAGQQRRLALARLWLS--RAPLWILDEPTTALDKAGVALLA-GLLRAHLARGGIVL 181 (198)
T ss_pred HHHHHHHHcCCHHHhcC--ChhhcCHHHHHHHHHHHHHhc--CCCEEEEeCCCcCCCHHHHHHHH-HHHHHHHhCCCEEE
Confidence 4556777888653221 1234555544 899999999 999999999999 9999999998 88988876788887
Q ss_pred EEE
Q 026486 135 AVY 137 (238)
Q Consensus 135 ~v~ 137 (238)
+++
T Consensus 182 ~~s 184 (198)
T TIGR01189 182 LTT 184 (198)
T ss_pred EEE
Confidence 773
No 127
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.91 E-value=1.9e-24 Score=192.70 Aligned_cols=148 Identities=13% Similarity=0.114 Sum_probs=113.9
Q ss_pred EEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-----CCCCC-------CCCCChhhhhh----------------
Q 026486 7 VIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDY-------PVAMDIRELIS---------------- 58 (238)
Q Consensus 7 IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-----~~~~~-------~~~~~i~~~i~---------------- 58 (238)
|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| ++..++++++.
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~ 80 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPR 80 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHHH
Confidence 689999999999999999999999999999976532 22333 33456766653
Q ss_pred HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CCCeEE
Q 026486 59 LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNVC 134 (238)
Q Consensus 59 ~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~~tvi 134 (238)
+.++++.+++.+..... ...++++++ ++||++++. +|+++|||||++ ||+.++..+. ++++++.+ .|.++|
T Consensus 81 ~~~~l~~~~l~~~~~~~--~~~LSgGq~qRvalaraL~~--~p~lllLDEP~s~LD~~~~~~l~-~~l~~l~~~~g~tii 155 (325)
T TIGR01187 81 VLEALRLVQLEEFADRK--PHQLSGGQQQRVALARALVF--KPKILLLDEPLSALDKKLRDQMQ-LELKTIQEQLGITFV 155 (325)
T ss_pred HHHHHHHcCCcchhcCC--hhhCCHHHHHHHHHHHHHHh--CCCEEEEeCCCccCCHHHHHHHH-HHHHHHHHhcCCEEE
Confidence 35677888887543222 234666654 999999999 999999999999 9999999999 88888865 488888
Q ss_pred EEEecccccccchhHHHhhhHHHHHHHHh
Q 026486 135 AVYLLDSQFITDVTKFISGCMASLSAMVQ 163 (238)
Q Consensus 135 ~v~l~d~~~~~d~~~~~~~~l~~~~~~~~ 163 (238)
++ +|...+...+++.+++...+.+.
T Consensus 156 iv----THd~~e~~~~~d~i~vl~~G~i~ 180 (325)
T TIGR01187 156 FV----THDQEEAMTMSDRIAIMRKGKIA 180 (325)
T ss_pred EE----eCCHHHHHHhCCEEEEEECCEEE
Confidence 88 48888777788877666555543
No 128
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.91 E-value=3e-24 Score=185.22 Aligned_cols=146 Identities=17% Similarity=0.185 Sum_probs=110.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC--------------------CCCCC-C------CCCChhh
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------------------ENFDY-P------VAMDIRE 55 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~--------------------~~~~~-~------~~~~i~~ 55 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... +.++| + +..++++
T Consensus 32 e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~e 111 (257)
T PRK10619 32 DVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLE 111 (257)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccccchHHHHHhhceEEEecCcccCCCCcHHH
Confidence 4689999999999999999999999999999999875421 22343 2 2346666
Q ss_pred hhh-----------------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhH
Q 026486 56 LIS-----------------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTH 115 (238)
Q Consensus 56 ~i~-----------------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~ 115 (238)
++. +.++++.+|+........ ...++++++ +.||++++. +|+++|+||||+ ||+.++
T Consensus 112 nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~ 188 (257)
T PRK10619 112 NVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKY-PVHLSGGQQQRVSIARALAM--EPEVLLFDEPTSALDPELV 188 (257)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCC-cccCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHH
Confidence 653 346778888864310111 234555543 899999999 999999999999 999999
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEecccccccchhHHHhhhHH
Q 026486 116 VPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMA 156 (238)
Q Consensus 116 ~~~~~~ll~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~ 156 (238)
..+. ++++++++.|.+++++ +|...+...+++.++.
T Consensus 189 ~~l~-~~l~~l~~~g~tiiiv----sH~~~~~~~~~d~i~~ 224 (257)
T PRK10619 189 GEVL-RIMQQLAEEGKTMVVV----THEMGFARHVSSHVIF 224 (257)
T ss_pred HHHH-HHHHHHHhcCCEEEEE----eCCHHHHHHhcCEEEE
Confidence 9999 9999987678898888 4777766666665543
No 129
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=2.2e-24 Score=192.43 Aligned_cols=158 Identities=18% Similarity=0.163 Sum_probs=119.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC----------CCCCC-CC--------CCChhhhhh-----
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-PV--------AMDIRELIS----- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~----------~~~~~-~~--------~~~i~~~i~----- 58 (238)
-+++|+|+||||||||+++|+|+++|++|+|.++|.++.. ..++| +| .+++.+++.
T Consensus 42 e~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~ 121 (327)
T PRK11308 42 KTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLI 121 (327)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHH
Confidence 3689999999999999999999999999999999987532 12333 22 234443331
Q ss_pred ------------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHH
Q 026486 59 ------------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV 123 (238)
Q Consensus 59 ------------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll 123 (238)
+.++++.+|+.+.....+. ..++++++ ++||++++. +|++||+||||+ ||..++..++ +++
T Consensus 122 ~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p-~~LSgGq~QRv~iArAL~~--~P~lLilDEPts~LD~~~~~~i~-~lL 197 (327)
T PRK11308 122 NTSLSAAERREKALAMMAKVGLRPEHYDRYP-HMFSGGQRQRIAIARALML--DPDVVVADEPVSALDVSVQAQVL-NLM 197 (327)
T ss_pred ccCCCHHHHHHHHHHHHHHCCCChHHhcCCC-ccCCHHHHHHHHHHHHHHc--CCCEEEEECCCccCCHHHHHHHH-HHH
Confidence 5678889998642212222 34666654 999999999 999999999999 9999999999 999
Q ss_pred HHHHh-CCCeEEEEEecccccccchhHHHhhhHHHHHHHHhhcCCe
Q 026486 124 DHLKS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPH 168 (238)
Q Consensus 124 ~~l~~-~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~~~p~ 168 (238)
+++++ .|.++++| +|.+.....+++.++++..+.+....+.
T Consensus 198 ~~l~~~~g~til~i----THdl~~~~~~adrv~vm~~G~ive~g~~ 239 (327)
T PRK11308 198 MDLQQELGLSYVFI----SHDLSVVEHIADEVMVMYLGRCVEKGTK 239 (327)
T ss_pred HHHHHHcCCEEEEE----eCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 99876 48899888 4888877888887766666665544444
No 130
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.90 E-value=6.4e-24 Score=181.18 Aligned_cols=145 Identities=17% Similarity=0.227 Sum_probs=107.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC------CCCCC--------CCCCChhhhhh----------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY--------PVAMDIRELIS---------- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~------~~~~~--------~~~~~i~~~i~---------- 58 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| .+..++++++.
T Consensus 48 e~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~ 127 (236)
T cd03267 48 EIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPP 127 (236)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCCCcHHHHHHHHHHHcCCCH
Confidence 4689999999999999999999999999999998875421 12222 22345555542
Q ss_pred ------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC
Q 026486 59 ------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR 129 (238)
Q Consensus 59 ------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~ 129 (238)
+.++++.+++.+..... ...++++++ +.+|++++. +|+++|+|||++ ||+.++..+. +++++++++
T Consensus 128 ~~~~~~~~~~l~~~gl~~~~~~~--~~~LS~G~~qrl~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~ 202 (236)
T cd03267 128 ARFKKRLDELSELLDLEELLDTP--VRQLSLGQRMRAEIAAALLH--EPEILFLDEPTIGLDVVAQENIR-NFLKEYNRE 202 (236)
T ss_pred HHHHHHHHHHHHHcCChhHhcCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCCCCCCHHHHHHHH-HHHHHHHhc
Confidence 34567777776432111 234555544 899999999 999999999999 9999999999 999998654
Q ss_pred -CCeEEEEEecccccccchhHHHhhhHH
Q 026486 130 -NFNVCAVYLLDSQFITDVTKFISGCMA 156 (238)
Q Consensus 130 -~~tvi~v~l~d~~~~~d~~~~~~~~l~ 156 (238)
+.+++++ +|.......+++.++.
T Consensus 203 ~~~tiiiv----sH~~~~~~~~~d~i~~ 226 (236)
T cd03267 203 RGTTVLLT----SHYMKDIEALARRVLV 226 (236)
T ss_pred CCCEEEEE----ecCHHHHHHhCCEEEE
Confidence 7788777 4777766666665443
No 131
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.90 E-value=8.4e-24 Score=173.60 Aligned_cols=129 Identities=16% Similarity=0.247 Sum_probs=98.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC--------CCCCC-CCC---------CChhhhhhHHHHHH
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-PVA---------MDIRELISLEDVME 64 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~--------~~~~~-~~~---------~~i~~~i~~~~~l~ 64 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| +++ .++++++.....
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~-- 104 (182)
T cd03215 27 EIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIALSSL-- 104 (182)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCCcHHHHHHHHhh--
Confidence 3689999999999999999999999999999999976532 12333 222 334444322110
Q ss_pred HcCCCCCCchhhhHHhhhhhH--HHHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEEeccc
Q 026486 65 ELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDS 141 (238)
Q Consensus 65 ~~~l~~~~~~~~~~~~~~~~~--s~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~tvi~v~l~d~ 141 (238)
+++++ +++||++++. +|+++++|||++ ||+.++..+. ++++++.+++.+++++ +
T Consensus 105 ----------------LS~G~~qrl~la~al~~--~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~~~~tiii~----s 161 (182)
T cd03215 105 ----------------LSGGNQQKVVLARWLAR--DPRVLILDEPTRGVDVGAKAEIY-RLIRELADAGKAVLLI----S 161 (182)
T ss_pred ----------------cCHHHHHHHHHHHHHcc--CCCEEEECCCCcCCCHHHHHHHH-HHHHHHHHCCCEEEEE----e
Confidence 33333 3899999999 999999999999 9999999999 8999887667888777 4
Q ss_pred ccccchhHHHhhhHH
Q 026486 142 QFITDVTKFISGCMA 156 (238)
Q Consensus 142 ~~~~d~~~~~~~~l~ 156 (238)
|...+...+++.+++
T Consensus 162 h~~~~~~~~~d~v~~ 176 (182)
T cd03215 162 SELDELLGLCDRILV 176 (182)
T ss_pred CCHHHHHHhCCEEEE
Confidence 887777777765543
No 132
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.90 E-value=5e-24 Score=181.96 Aligned_cols=145 Identities=14% Similarity=0.122 Sum_probs=104.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCC--cCCCceEEEeeecCCC--------CCCCC-CC------CCChhhhhh-------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHC--ETVRRTMHIVNLDPAA--------ENFDY-PV------AMDIRELIS------- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l--~~~~G~i~i~~~d~~~--------~~~~~-~~------~~~i~~~i~------- 58 (238)
-+++|+||||||||||+++|+|++ +|++|+|.++|.++.. ..++| ++ ..++++++.
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~ 106 (243)
T TIGR01978 27 EIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARR 106 (243)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeeccccccCCcCHHHHHHHHHHHhh
Confidence 368999999999999999999995 7999999999976531 11333 22 233443321
Q ss_pred ----------------HHHHHHHcCCCC-CCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHH
Q 026486 59 ----------------LEDVMEELGLGP-NGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (238)
Q Consensus 59 ----------------~~~~l~~~~l~~-~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~ 118 (238)
+.++++.+++.+ ...... ...++++++ ++||++++. +|+++|+||||+ ||+.++..+
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~LS~G~~qrl~la~al~~--~p~llllDEPt~~LD~~~~~~l 183 (243)
T TIGR01978 107 SARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSV-NEGFSGGEKKRNEILQMALL--EPKLAILDEIDSGLDIDALKIV 183 (243)
T ss_pred cccccccccHHHHHHHHHHHHHHcCCchhhccccc-ccCcCHHHHHHHHHHHHHhc--CCCEEEecCCcccCCHHHHHHH
Confidence 345666777753 211111 112555543 899999999 999999999999 999999999
Q ss_pred HHHHHHHHHhCCCeEEEEEecccccccchhHH-HhhhH
Q 026486 119 LRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF-ISGCM 155 (238)
Q Consensus 119 ~~~ll~~l~~~~~tvi~v~l~d~~~~~d~~~~-~~~~l 155 (238)
. +++++++++|.+++++ +|.......+ ++.++
T Consensus 184 ~-~~l~~~~~~~~tvi~v----sH~~~~~~~~~~d~i~ 216 (243)
T TIGR01978 184 A-EGINRLREPDRSFLII----THYQRLLNYIKPDYVH 216 (243)
T ss_pred H-HHHHHHHHCCcEEEEE----EecHHHHHhhcCCeEE
Confidence 9 9999987678888877 4777666555 45443
No 133
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.90 E-value=1.1e-23 Score=181.12 Aligned_cols=145 Identities=14% Similarity=0.147 Sum_probs=107.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC--CCCCCCCCCChhhhhh------------HHHHHHHcCC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--ENFDYPVAMDIRELIS------------LEDVMEELGL 68 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~--~~~~~~~~~~i~~~i~------------~~~~l~~~~l 68 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|..++. +........++++++. ..++++.+++
T Consensus 26 e~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~l 105 (246)
T cd03237 26 EVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQI 105 (246)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHcCC
Confidence 3689999999999999999999999999999998753211 1111123346666553 3457777887
Q ss_pred CCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CCCeEEEEEecccccc
Q 026486 69 GPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNVCAVYLLDSQFI 144 (238)
Q Consensus 69 ~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~~tvi~v~l~d~~~~ 144 (238)
...... ....++++++ ++||++++. +|+++|+||||+ ||+.++..+. ++++++.+ .+.+++++ +|.+
T Consensus 106 ~~~~~~--~~~~LSgGe~qrv~iaraL~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~~tiiiv----sHd~ 176 (246)
T cd03237 106 EQILDR--EVPELSGGELQRVAIAACLSK--DADIYLLDEPSAYLDVEQRLMAS-KVIRRFAENNEKTAFVV----EHDI 176 (246)
T ss_pred HHHhhC--ChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEE----eCCH
Confidence 643211 1234555543 899999999 999999999999 9999999999 88999865 47888888 4887
Q ss_pred cchhHHHhhhHH
Q 026486 145 TDVTKFISGCMA 156 (238)
Q Consensus 145 ~d~~~~~~~~l~ 156 (238)
.....+++.+++
T Consensus 177 ~~~~~~~d~i~~ 188 (246)
T cd03237 177 IMIDYLADRLIV 188 (246)
T ss_pred HHHHHhCCEEEE
Confidence 776666665543
No 134
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.90 E-value=3.8e-24 Score=181.77 Aligned_cols=148 Identities=14% Similarity=0.175 Sum_probs=107.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcC----CCceEEEeeecCCC-----CCCCC---------CCCCChhhhhh------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCET----VRRTMHIVNLDPAA-----ENFDY---------PVAMDIRELIS------ 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~----~~G~i~i~~~d~~~-----~~~~~---------~~~~~i~~~i~------ 58 (238)
-+++|+||||||||||+++|+|+++| ++|+|.++|.++.. ..++| .+..++.+++.
T Consensus 13 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~ 92 (230)
T TIGR02770 13 EVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTMGNHAIETLRSL 92 (230)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccCHHHHHHHHHHHc
Confidence 36899999999999999999999999 89999999976531 12333 12234433321
Q ss_pred ----------HHHHHHHcCCCCCC-chhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHH
Q 026486 59 ----------LEDVMEELGLGPNG-GLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD 124 (238)
Q Consensus 59 ----------~~~~l~~~~l~~~~-~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~ 124 (238)
+.++++.+++.... ........++++++ ++||++++. +|+++||||||+ ||+.++..+. ++++
T Consensus 93 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~--~p~vllLDEPt~~LD~~~~~~l~-~~l~ 169 (230)
T TIGR02770 93 GKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLL--EPPFLIADEPTTDLDVVNQARVL-KLLR 169 (230)
T ss_pred CccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhc--CCCEEEEcCCccccCHHHHHHHH-HHHH
Confidence 45677788886210 01111234555543 899999999 999999999999 9999999999 8899
Q ss_pred HHHh-CCCeEEEEEecccccccchhHHHhhhHHH
Q 026486 125 HLKS-RNFNVCAVYLLDSQFITDVTKFISGCMAS 157 (238)
Q Consensus 125 ~l~~-~~~tvi~v~l~d~~~~~d~~~~~~~~l~~ 157 (238)
++++ .+.+++++ +|...+...+++.+++.
T Consensus 170 ~~~~~~~~tiii~----sH~~~~~~~~~d~i~~l 199 (230)
T TIGR02770 170 ELRQLFGTGILLI----THDLGVVARIADEVAVM 199 (230)
T ss_pred HHHHhcCCEEEEE----eCCHHHHHHhCCEEEEE
Confidence 8876 47888777 48887777776655443
No 135
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.90 E-value=6.3e-24 Score=199.42 Aligned_cols=152 Identities=14% Similarity=0.169 Sum_probs=116.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC--------CCCCC-C------CCCChhhhh----------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-P------VAMDIRELI---------- 57 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~--------~~~~~-~------~~~~i~~~i---------- 57 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| + +..++++++
T Consensus 31 e~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~ 110 (501)
T PRK10762 31 RVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRF 110 (501)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhcccccccc
Confidence 4689999999999999999999999999999999876521 22333 2 234454433
Q ss_pred ----------hHHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHH
Q 026486 58 ----------SLEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD 124 (238)
Q Consensus 58 ----------~~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~ 124 (238)
.+.++++.+|+....... ...++++++ ++||++++. +|+++|+||||+ ||+.++..++ ++++
T Consensus 111 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrv~la~al~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~ 185 (501)
T PRK10762 111 GRIDWKKMYAEADKLLARLNLRFSSDKL--VGELSIGEQQMVEIAKVLSF--ESKVIIMDEPTDALTDTETESLF-RVIR 185 (501)
T ss_pred CccCHHHHHHHHHHHHHHcCCCCCccCc--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcCCCCHHHHHHHH-HHHH
Confidence 145678888887543222 345666654 999999999 999999999999 9999999999 9999
Q ss_pred HHHhCCCeEEEEEecccccccchhHHHhhhHHHHHHHHh
Q 026486 125 HLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQ 163 (238)
Q Consensus 125 ~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~ 163 (238)
++++.|.++|++ +|...+...+++.+++...+.+.
T Consensus 186 ~l~~~~~tvii~----sHd~~~~~~~~d~i~~l~~G~i~ 220 (501)
T PRK10762 186 ELKSQGRGIVYI----SHRLKEIFEICDDVTVFRDGQFI 220 (501)
T ss_pred HHHHCCCEEEEE----eCCHHHHHHhCCEEEEEeCCEEE
Confidence 997778888777 48888888888877666555443
No 136
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=4.2e-24 Score=174.02 Aligned_cols=129 Identities=16% Similarity=0.276 Sum_probs=94.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC------CCCCC-CCCCChhhhhhHHHHHHHcCCCCCCchh
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-PVAMDIRELISLEDVMEELGLGPNGGLI 75 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~------~~~~~-~~~~~i~~~i~~~~~l~~~~l~~~~~~~ 75 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..++| +|+..+....++.+.+.
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~----------- 95 (173)
T cd03230 27 EIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLK----------- 95 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhh-----------
Confidence 3689999999999999999999999999999999976532 22333 33221111112222221
Q ss_pred hhHHhhhhh--HHHHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccchhHHHh
Q 026486 76 YCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (238)
Q Consensus 76 ~~~~~~~~~--~s~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~tvi~v~l~d~~~~~d~~~~~~ 152 (238)
++++ +++.||++++. +|+++++|||++ ||+.++..+. ++++++.++|.+++++ +|.......+++
T Consensus 96 -----LS~G~~qrv~laral~~--~p~illlDEPt~~LD~~~~~~l~-~~l~~~~~~g~tiii~----th~~~~~~~~~d 163 (173)
T cd03230 96 -----LSGGMKQRLALAQALLH--DPELLILDEPTSGLDPESRREFW-ELLRELKKEGKTILLS----SHILEEAERLCD 163 (173)
T ss_pred -----cCHHHHHHHHHHHHHHc--CCCEEEEeCCccCCCHHHHHHHH-HHHHHHHHCCCEEEEE----CCCHHHHHHhCC
Confidence 3333 23899999999 999999999999 9999999999 9999987667788777 476665555555
Q ss_pred hh
Q 026486 153 GC 154 (238)
Q Consensus 153 ~~ 154 (238)
.+
T Consensus 164 ~i 165 (173)
T cd03230 164 RV 165 (173)
T ss_pred EE
Confidence 44
No 137
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.90 E-value=7e-24 Score=179.64 Aligned_cols=136 Identities=19% Similarity=0.211 Sum_probs=102.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-----------CCCCC-C------CCCChhhhhh------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-P------VAMDIRELIS------ 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-----------~~~~~-~------~~~~i~~~i~------ 58 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..++| + +..++.+++.
T Consensus 37 e~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~ 116 (228)
T PRK10584 37 ETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLR 116 (228)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhc
Confidence 3789999999999999999999999999999999876521 12333 2 2345555542
Q ss_pred ----------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 026486 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (238)
Q Consensus 59 ----------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~ 125 (238)
+.++++.+++....... ...++++++ +.||++++. +|+++|+||||+ ||+.++..+. +++++
T Consensus 117 ~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~Ge~qrl~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~ 191 (228)
T PRK10584 117 GESSRQSRNGAKALLEQLGLGKRLDHL--PAQLSGGEQQRVALARAFNG--RPDVLFADEPTGNLDRQTGDKIA-DLLFS 191 (228)
T ss_pred CCCHHHHHHHHHHHHHHcCCHhHhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHH-HHHHH
Confidence 45567788886432111 234555543 899999999 999999999999 9999999999 99999
Q ss_pred HHh-CCCeEEEEEecccccccch
Q 026486 126 LKS-RNFNVCAVYLLDSQFITDV 147 (238)
Q Consensus 126 l~~-~~~tvi~v~l~d~~~~~d~ 147 (238)
+++ .|.+++++ +|.....
T Consensus 192 ~~~~~~~tii~~----sH~~~~~ 210 (228)
T PRK10584 192 LNREHGTTLILV----THDLQLA 210 (228)
T ss_pred HHHhcCCEEEEE----ecCHHHH
Confidence 865 47888777 3666544
No 138
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=2.1e-24 Score=189.43 Aligned_cols=153 Identities=16% Similarity=0.119 Sum_probs=113.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCC------------CCCCCC-CCC-------CChhhhhh-----
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA------------AENFDY-PVA-------MDIRELIS----- 58 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~------------~~~~~~-~~~-------~~i~~~i~----- 58 (238)
+++|+||||||||||+++|+|+++|++|+|.++|.++. ...++| +++ .++++++.
T Consensus 39 ~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~ 118 (289)
T PRK13645 39 VTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVN 118 (289)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHH
Confidence 68999999999999999999999999999999987642 112334 221 24555442
Q ss_pred -----------HHHHHHHcCCC-CCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHH
Q 026486 59 -----------LEDVMEELGLG-PNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV 123 (238)
Q Consensus 59 -----------~~~~l~~~~l~-~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll 123 (238)
+.++++.+++. ..... ....++++++ ++||++++. +|+++|+||||+ ||+.++..++ +++
T Consensus 119 ~~~~~~~~~~~~~~ll~~~~L~~~~~~~--~~~~LS~Gq~qrv~laral~~--~p~lLlLDEPt~~LD~~~~~~l~-~~l 193 (289)
T PRK13645 119 LGENKQEAYKKVPELLKLVQLPEDYVKR--SPFELSGGQKRRVALAGIIAM--DGNTLVLDEPTGGLDPKGEEDFI-NLF 193 (289)
T ss_pred cCCCHHHHHHHHHHHHHHcCCChhHhcC--ChhhCCHHHHHHHHHHHHHHh--CCCEEEEeCCcccCCHHHHHHHH-HHH
Confidence 34567777773 22111 1234666554 899999999 999999999999 9999999999 889
Q ss_pred HHHHh-CCCeEEEEEecccccccchhHHHhhhHHHHHHHHhhc
Q 026486 124 DHLKS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLE 165 (238)
Q Consensus 124 ~~l~~-~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~~ 165 (238)
+++.+ .|.+++++ +|...+...+++.+++...+.+...
T Consensus 194 ~~~~~~~~~tiiii----sH~~~~~~~~~d~i~~l~~G~i~~~ 232 (289)
T PRK13645 194 ERLNKEYKKRIIMV----THNMDQVLRIADEVIVMHEGKVISI 232 (289)
T ss_pred HHHHHhcCCEEEEE----ecCHHHHHHhCCEEEEEECCEEEEe
Confidence 98865 48888877 4888877788887766655555433
No 139
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.90 E-value=3.2e-25 Score=181.36 Aligned_cols=161 Identities=16% Similarity=0.220 Sum_probs=125.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC--------CCCCC-CC------CCChhhhhh---------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-PV------AMDIRELIS--------- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~--------~~~~~-~~------~~~i~~~i~--------- 58 (238)
-+++++||||+||||.+.++.|+.+|++|+|.+++.|+.. -.++| +| .+++++++.
T Consensus 31 EiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~d 110 (243)
T COG1137 31 EIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKD 110 (243)
T ss_pred cEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcccccccchHhhcCcHHHHHHHHHhhhhcc
Confidence 4799999999999999999999999999999999998743 34677 55 356666653
Q ss_pred ---------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 026486 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (238)
Q Consensus 59 ---------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l 126 (238)
+++++++|++.+...... ..++++-+ +.|||+|+. +|++++||||++ +||.+..++- ++++.|
T Consensus 111 ~~~~~~~~~l~~LL~ef~i~hlr~~~a--~sLSGGERRR~EIARaLa~--~P~fiLLDEPFAGVDPiaV~dIq-~iI~~L 185 (243)
T COG1137 111 LKKAERKEELDALLEEFHITHLRDSKA--YSLSGGERRRVEIARALAA--NPKFILLDEPFAGVDPIAVIDIQ-RIIKHL 185 (243)
T ss_pred hhHHHHHHHHHHHHHHhchHHHhcCcc--cccccchHHHHHHHHHHhc--CCCEEEecCCccCCCchhHHHHH-HHHHHH
Confidence 557888888876433221 13444433 999999999 999999999999 9999999998 999999
Q ss_pred HhCCCeEEEEEecccccccchhHHHhhhHHHHHHHHhhcCCeeeee
Q 026486 127 KSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNIL 172 (238)
Q Consensus 127 ~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~~~p~~~vl 172 (238)
+.+|..|++. -|.+.+.-..++++.....|.+..+..+-.+.
T Consensus 186 ~~rgiGvLIT----DHNVREtL~i~dRaYIi~~G~vla~G~p~ei~ 227 (243)
T COG1137 186 KDRGIGVLIT----DHNVRETLDICDRAYIISDGKVLAEGSPEEIV 227 (243)
T ss_pred HhCCceEEEc----cccHHHHHhhhheEEEEecCeEEecCCHHHHh
Confidence 9889888655 48888888888876655555555554443333
No 140
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.90 E-value=6.5e-24 Score=199.78 Aligned_cols=151 Identities=15% Similarity=0.168 Sum_probs=117.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC--------CCCCC-C------CCCChhhhhh---------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-P------VAMDIRELIS--------- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~--------~~~~~-~------~~~~i~~~i~--------- 58 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| + +..++.+++.
T Consensus 38 e~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~ 117 (510)
T PRK15439 38 EVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQAS 117 (510)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhcccccchHH
Confidence 3689999999999999999999999999999999976532 12333 2 2346666553
Q ss_pred ---HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCe
Q 026486 59 ---LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFN 132 (238)
Q Consensus 59 ---~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~t 132 (238)
+.++++.+++....... ...++++++ ++||++++. +|+++|+||||+ ||+.++..+. +++++++++|.+
T Consensus 118 ~~~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrv~la~aL~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~g~t 192 (510)
T PRK15439 118 MQKMKQLLAALGCQLDLDSS--AGSLEVADRQIVEILRGLMR--DSRILILDEPTASLTPAETERLF-SRIRELLAQGVG 192 (510)
T ss_pred HHHHHHHHHHcCCCccccCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEECCCCCCCHHHHHHHH-HHHHHHHHCCCE
Confidence 45678889987543222 345666654 999999999 999999999999 9999999999 999998777888
Q ss_pred EEEEEecccccccchhHHHhhhHHHHHHHH
Q 026486 133 VCAVYLLDSQFITDVTKFISGCMASLSAMV 162 (238)
Q Consensus 133 vi~v~l~d~~~~~d~~~~~~~~l~~~~~~~ 162 (238)
+|++ +|.......+++.+++...+.+
T Consensus 193 iiiv----tHd~~~~~~~~d~i~~l~~G~i 218 (510)
T PRK15439 193 IVFI----SHKLPEIRQLADRISVMRDGTI 218 (510)
T ss_pred EEEE----eCCHHHHHHhCCEEEEEECCEE
Confidence 8877 4888777777776665554444
No 141
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=3.7e-24 Score=185.59 Aligned_cols=151 Identities=25% Similarity=0.379 Sum_probs=110.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-------CCCCC-C------CCCChhhhhh----------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-P------VAMDIRELIS---------- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~------~~~~i~~~i~---------- 58 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| + +..++.+++.
T Consensus 38 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~ 117 (265)
T PRK10575 38 KVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGAL 117 (265)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccccccc
Confidence 3689999999999999999999999999999999976421 12233 1 2234444332
Q ss_pred ----------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 026486 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (238)
Q Consensus 59 ----------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~ 125 (238)
+.++++.+++.+..... ...++++++ ++||++++. +|+++|+||||+ ||+.+++.+. +++++
T Consensus 118 ~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~~~-~~l~~ 192 (265)
T PRK10575 118 GRFGAADREKVEEAISLVGLKPLAHRL--VDSLSGGERQRAWIAMLVAQ--DSRCLLLDEPTSALDIAHQVDVL-ALVHR 192 (265)
T ss_pred cCCCHHHHHHHHHHHHHcCCHHHhcCC--cccCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHH
Confidence 34566777775421111 124555543 899999999 999999999999 9999999999 99999
Q ss_pred HHhC-CCeEEEEEecccccccchhHHHhhhHHHHHHHH
Q 026486 126 LKSR-NFNVCAVYLLDSQFITDVTKFISGCMASLSAMV 162 (238)
Q Consensus 126 l~~~-~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~ 162 (238)
+.+. |.+++++ +|.......+++.+++...+.+
T Consensus 193 l~~~~~~tiii~----sH~~~~i~~~~d~i~~l~~G~i 226 (265)
T PRK10575 193 LSQERGLTVIAV----LHDINMAARYCDYLVALRGGEM 226 (265)
T ss_pred HHHhcCCEEEEE----eCCHHHHHHhCCEEEEEECCeE
Confidence 8754 7888777 5888777777776554444433
No 142
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.90 E-value=4.6e-24 Score=172.23 Aligned_cols=160 Identities=16% Similarity=0.207 Sum_probs=118.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC--------------------CCCCC-CCCCChh------hh
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------------------ENFDY-PVAMDIR------EL 56 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~--------------------~~~~~-~~~~~i~------~~ 56 (238)
++.|||.+||||||+++||+=+.+|+.|.|.++|..+.- ..++. +|+++.+ ++
T Consensus 34 VisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeN 113 (256)
T COG4598 34 VISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLEN 113 (256)
T ss_pred EEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHH
Confidence 688999999999999999999999999999999865421 01122 3444433 33
Q ss_pred hh-----------------HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHHhccCCCCEEEEeCCCc-ccHHhHH
Q 026486 57 IS-----------------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHV 116 (238)
Q Consensus 57 i~-----------------~~~~l~~~~l~~~~~~~~~~~~~~~~~--s~~la~~l~~~~~p~~lilDEPt~-LD~~~~~ 116 (238)
+- ++.++.++|+..... .|+. .+++++ +++|||+|+. +|++++|||||+ |||...-
T Consensus 114 ViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~-~YP~-~LSGGQQQR~aIARaLam--eP~vmLFDEPTSALDPElVg 189 (256)
T COG4598 114 VIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKAD-AYPA-HLSGGQQQRVAIARALAM--EPEVMLFDEPTSALDPELVG 189 (256)
T ss_pred HHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhh-cCcc-ccCchHHHHHHHHHHHhc--CCceEeecCCcccCCHHHHH
Confidence 31 566788899987654 3442 355543 3999999999 999999999999 9999999
Q ss_pred HHHHHHHHHHHhCCCeEEEEEecccccccchhHHHhhhHHHHHHHHhhcCCeeeee
Q 026486 117 PVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNIL 172 (238)
Q Consensus 117 ~~~~~ll~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~~~p~~~vl 172 (238)
+++ +.+++|+++|.|.++|+ |.+.-..+..+.+++.-.+.+.-+.|+-.||
T Consensus 190 EVL-kv~~~LAeEgrTMv~VT----HEM~FAR~Vss~v~fLh~G~iEE~G~P~qvf 240 (256)
T COG4598 190 EVL-KVMQDLAEEGRTMVVVT----HEMGFARDVSSHVIFLHQGKIEEEGPPEQVF 240 (256)
T ss_pred HHH-HHHHHHHHhCCeEEEEe----eehhHHHhhhhheEEeecceecccCChHHHh
Confidence 999 99999999999999884 7776555555555555555555555543333
No 143
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.90 E-value=3.2e-24 Score=179.04 Aligned_cols=162 Identities=14% Similarity=0.096 Sum_probs=114.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC--------CCCCC-------CCCCChhhhhhHHH------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-------PVAMDIRELISLED------ 61 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~--------~~~~~-------~~~~~i~~~i~~~~------ 61 (238)
-+++++||||+|||||+++|+|+.++.+|+|.+.|.|+.. ..++| ++.+|++||+.+--
T Consensus 30 eiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~~ 109 (237)
T COG0410 30 EIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDK 109 (237)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhccccc
Confidence 4789999999999999999999999999999999999754 23444 34667777764110
Q ss_pred ------HHHHcCCCCCCchhh--hHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC-
Q 026486 62 ------VMEELGLGPNGGLIY--CMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR- 129 (238)
Q Consensus 62 ------~l~~~~l~~~~~~~~--~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~- 129 (238)
.=+-+.+-|....+. ....++++.+ ++|||||.. +|++|+||||+. |-|.-..+++ +.+++++++
T Consensus 110 ~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~--~PklLLLDEPs~GLaP~iv~~I~-~~i~~l~~~~ 186 (237)
T COG0410 110 EAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMS--RPKLLLLDEPSEGLAPKIVEEIF-EAIKELRKEG 186 (237)
T ss_pred ccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhc--CCCEEEecCCccCcCHHHHHHHH-HHHHHHHHcC
Confidence 111122222110000 0112333322 899999999 999999999998 9999999999 999999865
Q ss_pred CCeEEEEEecccccccchhHHHhhhHHHHHHHHhhcCCeeee
Q 026486 130 NFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNI 171 (238)
Q Consensus 130 ~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~~~p~~~v 171 (238)
|.||++|- +++.-.-++.++..+...|.+.++.|.-++
T Consensus 187 g~tIlLVE----Qn~~~Al~iaDr~yvle~Griv~~G~~~eL 224 (237)
T COG0410 187 GMTILLVE----QNARFALEIADRGYVLENGRIVLSGTAAEL 224 (237)
T ss_pred CcEEEEEe----ccHHHHHHhhCEEEEEeCCEEEEecCHHHH
Confidence 77888884 666655666666666666776666665433
No 144
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.90 E-value=6.7e-23 Score=170.60 Aligned_cols=130 Identities=11% Similarity=0.087 Sum_probs=100.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC------CCCCC-------CCCCChhhhhh-----------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS----------- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~------~~~~~-------~~~~~i~~~i~----------- 58 (238)
-+++|+||||||||||+++|+|+.+|++|+|.++|.++.. +.++| ++..++++++.
T Consensus 28 e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~~~~~~ 107 (200)
T PRK13540 28 GLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHFSPGAVG 107 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEeccccccCcCCCHHHHHHHHHhcCcchHH
Confidence 3689999999999999999999999999999999976532 12222 23456776653
Q ss_pred HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEE
Q 026486 59 LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCA 135 (238)
Q Consensus 59 ~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~tvi~ 135 (238)
+.++++.++++.... .....++++.+ ++||++++. +|+++|+|||++ ||+.++..+. ++++++++++.++++
T Consensus 108 ~~~~l~~~~l~~~~~--~~~~~LS~G~~~rv~laral~~--~p~~lilDEP~~~LD~~~~~~l~-~~l~~~~~~~~tiii 182 (200)
T PRK13540 108 ITELCRLFSLEHLID--YPCGLLSSGQKRQVALLRLWMS--KAKLWLLDEPLVALDELSLLTII-TKIQEHRAKGGAVLL 182 (200)
T ss_pred HHHHHHHcCCchhhh--CChhhcCHHHHHHHHHHHHHhc--CCCEEEEeCCCcccCHHHHHHHH-HHHHHHHHcCCEEEE
Confidence 466788888864321 12234555543 899999999 999999999999 9999999999 889988767888877
Q ss_pred EE
Q 026486 136 VY 137 (238)
Q Consensus 136 v~ 137 (238)
++
T Consensus 183 ~s 184 (200)
T PRK13540 183 TS 184 (200)
T ss_pred Ee
Confidence 73
No 145
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=4.4e-24 Score=186.14 Aligned_cols=151 Identities=16% Similarity=0.181 Sum_probs=110.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC--------CCCCC-CC-------CCChhhhhh--------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-PV-------AMDIRELIS-------- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~--------~~~~~-~~-------~~~i~~~i~-------- 58 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| ++ ..++.+++.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~ 108 (274)
T PRK13644 29 EYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCL 108 (274)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEEEEEChhhhcccchHHHHHHhhHHHcCC
Confidence 3689999999999999999999999999999999987532 12333 11 235555442
Q ss_pred --------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 026486 59 --------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (238)
Q Consensus 59 --------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~ 127 (238)
+.++++.+|+....... ...++++++ ++||++++. +|+++|+||||+ ||+.++..++ +++++++
T Consensus 109 ~~~~~~~~~~~~l~~~gl~~~~~~~--~~~LS~G~~qrv~laral~~--~p~lllLDEPt~gLD~~~~~~l~-~~l~~l~ 183 (274)
T PRK13644 109 PPIEIRKRVDRALAEIGLEKYRHRS--PKTLSGGQGQCVALAGILTM--EPECLIFDEVTSMLDPDSGIAVL-ERIKKLH 183 (274)
T ss_pred CHHHHHHHHHHHHHHCCCHHHhcCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHH
Confidence 45567778886432211 234555543 899999999 999999999999 9999999999 9999987
Q ss_pred hCCCeEEEEEecccccccchhHHHhhhHHHHHHHHh
Q 026486 128 SRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQ 163 (238)
Q Consensus 128 ~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~ 163 (238)
++|.|++++ +|...+. ..++.+++...+.+.
T Consensus 184 ~~g~til~~----tH~~~~~-~~~d~v~~l~~G~i~ 214 (274)
T PRK13644 184 EKGKTIVYI----THNLEEL-HDADRIIVMDRGKIV 214 (274)
T ss_pred hCCCEEEEE----ecCHHHH-hhCCEEEEEECCEEE
Confidence 678888877 4776655 346655544444443
No 146
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=6.9e-24 Score=182.82 Aligned_cols=150 Identities=18% Similarity=0.308 Sum_probs=110.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-------CCCCC-------CCCCChhhhhh----------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-------PVAMDIRELIS---------- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-------~~~~~i~~~i~---------- 58 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| .+..++.+++.
T Consensus 29 e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~ 108 (255)
T PRK11231 29 KITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLW 108 (255)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCccHHHHHHhccchhhhhc
Confidence 3689999999999999999999999999999999876421 12333 12234544432
Q ss_pred ----------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 026486 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (238)
Q Consensus 59 ----------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~ 125 (238)
+.++++.+++.+..... ...++++++ +.||++++. +|+++|+|||++ ||+.++..+. +++++
T Consensus 109 ~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~laral~~--~p~llllDEP~~~LD~~~~~~l~-~~l~~ 183 (255)
T PRK11231 109 GRLSAEDNARVNQAMEQTRINHLADRR--LTDLSGGQRQRAFLAMVLAQ--DTPVVLLDEPTTYLDINHQVELM-RLMRE 183 (255)
T ss_pred cCCCHHHHHHHHHHHHHcCCHHHHcCC--cccCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHH
Confidence 34556667775421111 234555543 899999999 999999999999 9999999999 88988
Q ss_pred HHhCCCeEEEEEecccccccchhHHHhhhHHHHHHH
Q 026486 126 LKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAM 161 (238)
Q Consensus 126 l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~ 161 (238)
++++|.+++++ +|...+...+++.+++...+.
T Consensus 184 l~~~~~tiii~----tH~~~~~~~~~d~i~~l~~G~ 215 (255)
T PRK11231 184 LNTQGKTVVTV----LHDLNQASRYCDHLVVLANGH 215 (255)
T ss_pred HHHCCCEEEEE----ECCHHHHHHhcCEEEEEECCe
Confidence 87668888777 588887777777665544433
No 147
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.90 E-value=1.1e-23 Score=182.68 Aligned_cols=150 Identities=16% Similarity=0.043 Sum_probs=109.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecC-CCCCCCCCCCCChhhhhh----------------HHHHHHH
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP-AAENFDYPVAMDIRELIS----------------LEDVMEE 65 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~-~~~~~~~~~~~~i~~~i~----------------~~~~l~~ 65 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|... ......+.+..++.+++. +.++++.
T Consensus 51 e~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~ 130 (264)
T PRK13546 51 DVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEF 130 (264)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999988521 112222334455555542 2345566
Q ss_pred cCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEEecccc
Q 026486 66 LGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQ 142 (238)
Q Consensus 66 ~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~tvi~v~l~d~~ 142 (238)
+++++.... ....++++++ ++||++++. +|+++|+|||++ ||+.++..++ +++.++++.|.++|++ +|
T Consensus 131 ~~l~~~~~~--~~~~LS~Gq~qrv~Laral~~--~p~iLlLDEPt~gLD~~~~~~l~-~~L~~~~~~g~tiIii----sH 201 (264)
T PRK13546 131 SELGEFIYQ--PVKKYSSGMRAKLGFSINITV--NPDILVIDEALSVGDQTFAQKCL-DKIYEFKEQNKTIFFV----SH 201 (264)
T ss_pred cCCchhhcC--CcccCCHHHHHHHHHHHHHhh--CCCEEEEeCccccCCHHHHHHHH-HHHHHHHHCCCEEEEE----cC
Confidence 677653211 1234555543 899999999 999999999999 9999999999 8888887678888888 48
Q ss_pred cccchhHHHhhhHHHHHHH
Q 026486 143 FITDVTKFISGCMASLSAM 161 (238)
Q Consensus 143 ~~~d~~~~~~~~l~~~~~~ 161 (238)
.......+++.+++...+.
T Consensus 202 ~~~~i~~~~d~i~~l~~G~ 220 (264)
T PRK13546 202 NLGQVRQFCTKIAWIEGGK 220 (264)
T ss_pred CHHHHHHHcCEEEEEECCE
Confidence 7777777777655444443
No 148
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.90 E-value=6.2e-24 Score=182.71 Aligned_cols=146 Identities=16% Similarity=0.165 Sum_probs=107.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCC--------------------CCCCCC-------CCCCChhh
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--------------------AENFDY-------PVAMDIRE 55 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~--------------------~~~~~~-------~~~~~i~~ 55 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.++. ...+.| .+..++.+
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~ 106 (252)
T TIGR03005 27 EKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLD 106 (252)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchhHHHHHhhCeEEEecCcccCCCCcHHH
Confidence 368999999999999999999999999999999987642 112333 22345555
Q ss_pred hhh-----------------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhH
Q 026486 56 LIS-----------------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTH 115 (238)
Q Consensus 56 ~i~-----------------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~ 115 (238)
++. +.++++.+|+.+.... ....++++++ ++||++++. +|+++|+|||++ ||+.++
T Consensus 107 nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~--~~~~LS~G~~qrv~laral~~--~p~llllDEP~~~LD~~~~ 182 (252)
T TIGR03005 107 NVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADH--MPAQLSGGQQQRVAIARALAM--RPKVMLFDEVTSALDPELV 182 (252)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhc--ChhhcCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHH
Confidence 442 3566777887543211 1234555543 899999999 999999999999 999999
Q ss_pred HHHHHHHHHHHHh-CCCeEEEEEecccccccchhHHHhhhHHH
Q 026486 116 VPVLRNFVDHLKS-RNFNVCAVYLLDSQFITDVTKFISGCMAS 157 (238)
Q Consensus 116 ~~~~~~ll~~l~~-~~~tvi~v~l~d~~~~~d~~~~~~~~l~~ 157 (238)
..+. ++++++.+ .|.+++++ +|...+...+++.+++.
T Consensus 183 ~~l~-~~l~~~~~~~~~tiiiv----sH~~~~~~~~~d~i~~l 220 (252)
T TIGR03005 183 GEVL-NVIRRLASEHDLTMLLV----THEMGFAREFADRVCFF 220 (252)
T ss_pred HHHH-HHHHHHHHhcCcEEEEE----eCCHHHHHHhcCEEEEE
Confidence 9999 98998876 48888888 48777666666644433
No 149
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=4.7e-24 Score=186.44 Aligned_cols=150 Identities=14% Similarity=0.155 Sum_probs=112.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-------CCCCC-CC-------CCChhhhhh----------
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-------AMDIRELIS---------- 58 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~-------~~~i~~~i~---------- 58 (238)
+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| ++ ..++.+++.
T Consensus 35 ~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~ 114 (279)
T PRK13635 35 WVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPR 114 (279)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhCCCCH
Confidence 689999999999999999999999999999999987632 12333 21 235666553
Q ss_pred ------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC
Q 026486 59 ------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR 129 (238)
Q Consensus 59 ------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~ 129 (238)
+.++++.+|+.+..... ...++++++ ++||++++. +|+++|+||||+ ||+.++..++ +++++++++
T Consensus 115 ~~~~~~~~~~l~~~gL~~~~~~~--~~~LS~G~~qrv~laral~~--~p~lllLDEPt~gLD~~~~~~l~-~~l~~l~~~ 189 (279)
T PRK13635 115 EEMVERVDQALRQVGMEDFLNRE--PHRLSGGQKQRVAIAGVLAL--QPDIIILDEATSMLDPRGRREVL-ETVRQLKEQ 189 (279)
T ss_pred HHHHHHHHHHHHHcCChhhhhCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHc
Confidence 45677788887542222 234555554 999999999 999999999999 9999999999 999999765
Q ss_pred -CCeEEEEEecccccccchhHHHhhhHHHHHHHHh
Q 026486 130 -NFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQ 163 (238)
Q Consensus 130 -~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~ 163 (238)
|.|++++ +|...... .++.+++...+.+.
T Consensus 190 ~~~tiliv----sH~~~~~~-~~d~i~~l~~G~i~ 219 (279)
T PRK13635 190 KGITVLSI----THDLDEAA-QADRVIVMNKGEIL 219 (279)
T ss_pred CCCEEEEE----ecCHHHHH-cCCEEEEEECCEEE
Confidence 8888877 47776554 36655554444443
No 150
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.90 E-value=7.6e-24 Score=181.64 Aligned_cols=149 Identities=19% Similarity=0.239 Sum_probs=107.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCC-----CceEEEeeecCCC---------CCCCC-CCC-----CChhhhhh----
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETV-----RRTMHIVNLDPAA---------ENFDY-PVA-----MDIRELIS---- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~-----~G~i~i~~~d~~~---------~~~~~-~~~-----~~i~~~i~---- 58 (238)
-+++|+||||||||||+++|+|+++|+ +|+|.++|.++.. ..++| +++ .++.+++.
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~e~l~~~~~ 107 (247)
T TIGR00972 28 QVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPR 107 (247)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccCCCCHHHHHHhHHH
Confidence 368999999999999999999999998 9999999976531 22333 221 45555442
Q ss_pred -------------HHHHHHHcCCCCCC--chhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHH
Q 026486 59 -------------LEDVMEELGLGPNG--GLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (238)
Q Consensus 59 -------------~~~~l~~~~l~~~~--~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~ 120 (238)
+.++++.+|+.+.. ........++++++ ++||++++. +|+++|+||||+ ||+.++..++
T Consensus 108 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~- 184 (247)
T TIGR00972 108 LHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAV--EPEVLLLDEPTSALDPIATGKIE- 184 (247)
T ss_pred hcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-
Confidence 34567777886210 01111234555543 899999999 999999999999 9999999999
Q ss_pred HHHHHHHhCCCeEEEEEecccccccchhHHHhhhHHHHH
Q 026486 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLS 159 (238)
Q Consensus 121 ~ll~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~ 159 (238)
++++++++ +.+++++ +|...+...+++.+++...
T Consensus 185 ~~l~~~~~-~~tiiiv----sH~~~~~~~~~d~i~~l~~ 218 (247)
T TIGR00972 185 ELIQELKK-KYTIVIV----THNMQQAARISDRTAFFYD 218 (247)
T ss_pred HHHHHHHh-cCeEEEE----ecCHHHHHHhCCEEEEEEC
Confidence 99999866 4777777 5888777777775544433
No 151
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.1e-23 Score=198.04 Aligned_cols=152 Identities=14% Similarity=0.149 Sum_probs=115.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC--------CCCCC-CC------CCChhhhhh---------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-PV------AMDIRELIS--------- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~--------~~~~~-~~------~~~i~~~i~--------- 58 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| +| ..++++++.
T Consensus 32 e~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~ 111 (510)
T PRK09700 32 EIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKV 111 (510)
T ss_pred cEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhcccccccc
Confidence 3689999999999999999999999999999999876532 12333 22 234444321
Q ss_pred --------------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHH
Q 026486 59 --------------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (238)
Q Consensus 59 --------------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ 121 (238)
+.++++.+|+....... ...++++++ ++||++++. +|+++|+||||+ ||+.++..++ +
T Consensus 112 ~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~--~~~LSgG~~qrv~ia~al~~--~p~lllLDEPt~~LD~~~~~~l~-~ 186 (510)
T PRK09700 112 CGVNIIDWREMRVRAAMMLLRVGLKVDLDEK--VANLSISHKQMLEIAKTLML--DAKVIIMDEPTSSLTNKEVDYLF-L 186 (510)
T ss_pred ccccccCHHHHHHHHHHHHHHcCCCCCcccc--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHH-H
Confidence 45577888886542222 345666654 999999999 999999999999 9999999999 9
Q ss_pred HHHHHHhCCCeEEEEEecccccccchhHHHhhhHHHHHHHHh
Q 026486 122 FVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQ 163 (238)
Q Consensus 122 ll~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~ 163 (238)
++++++++|.++|++ +|.......+++.+++...+.+.
T Consensus 187 ~l~~l~~~g~tiiiv----sHd~~~~~~~~d~v~~l~~G~i~ 224 (510)
T PRK09700 187 IMNQLRKEGTAIVYI----SHKLAEIRRICDRYTVMKDGSSV 224 (510)
T ss_pred HHHHHHhCCCEEEEE----eCCHHHHHHhCCEEEEEECCEEe
Confidence 999997778888877 48777777777777665555443
No 152
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.90 E-value=7.9e-23 Score=169.53 Aligned_cols=130 Identities=13% Similarity=0.050 Sum_probs=98.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC---CCCCC-------CCCCChhhhhh-----------HHH
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---ENFDY-------PVAMDIRELIS-----------LED 61 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~---~~~~~-------~~~~~i~~~i~-----------~~~ 61 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| .+..++++++. +.+
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~ 106 (195)
T PRK13541 27 AITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLGLKLEMTVFENLKFWSEIYNSAETLYA 106 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccCCcCCCccCCHHHHHHHHHHhcccHHHHHH
Confidence 3689999999999999999999999999999999976532 11222 23456777663 355
Q ss_pred HHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEE
Q 026486 62 VMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVY 137 (238)
Q Consensus 62 ~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~tvi~v~ 137 (238)
+++.+++.+..... ...++++++ +.+|++++. +|+++++|||++ +|+.++..+. ++++...+.+.++++++
T Consensus 107 ~l~~~~l~~~~~~~--~~~LS~G~~~rl~la~al~~--~p~~lllDEP~~~LD~~~~~~l~-~~l~~~~~~~~tiii~s 180 (195)
T PRK13541 107 AIHYFKLHDLLDEK--CYSLSSGMQKIVAIARLIAC--QSDLWLLDEVETNLSKENRDLLN-NLIVMKANSGGIVLLSS 180 (195)
T ss_pred HHHHcCCHhhhccC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHhCCCEEEEEe
Confidence 66777776432111 234555543 899999999 999999999998 9999999988 88876656678887773
No 153
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=5.2e-24 Score=186.16 Aligned_cols=155 Identities=15% Similarity=0.201 Sum_probs=113.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC--------CCCCC-CCC-------CChhhhhh---------
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-PVA-------MDIRELIS--------- 58 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~--------~~~~~-~~~-------~~i~~~i~--------- 58 (238)
+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| +++ .++.+++.
T Consensus 38 ~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~ 117 (280)
T PRK13633 38 FLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIP 117 (280)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHHhhheEEEecChhhhhccccHHHHHHhhHhhcCCC
Confidence 689999999999999999999999999999999976531 12333 221 23444332
Q ss_pred -------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 026486 59 -------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (238)
Q Consensus 59 -------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (238)
++++++.+|+.+..... ...++++++ ++||++++. +|+++|+|||++ ||+.++..+. ++++++++
T Consensus 118 ~~~~~~~~~~~l~~~gL~~~~~~~--~~~LS~G~~qrv~laral~~--~p~llllDEPt~gLD~~~~~~l~-~~l~~l~~ 192 (280)
T PRK13633 118 PEEIRERVDESLKKVGMYEYRRHA--PHLLSGGQKQRVAIAGILAM--RPECIIFDEPTAMLDPSGRREVV-NTIKELNK 192 (280)
T ss_pred HHHHHHHHHHHHHHCCCHhHhhCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHH
Confidence 45677788886542222 234555543 899999999 999999999999 9999999999 99999875
Q ss_pred -CCCeEEEEEecccccccchhHHHhhhHHHHHHHHhhcCCe
Q 026486 129 -RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPH 168 (238)
Q Consensus 129 -~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~~~p~ 168 (238)
.|.+++++ +|...+... ++.+++...+.+....++
T Consensus 193 ~~g~tillv----tH~~~~~~~-~d~v~~l~~G~i~~~g~~ 228 (280)
T PRK13633 193 KYGITIILI----THYMEEAVE-ADRIIVMDSGKVVMEGTP 228 (280)
T ss_pred hcCCEEEEE----ecChHHHhc-CCEEEEEECCEEEEecCH
Confidence 48888877 477776654 666666555555444443
No 154
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.90 E-value=9.5e-24 Score=198.56 Aligned_cols=150 Identities=14% Similarity=0.165 Sum_probs=113.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC--------CCCCC-CC---------CCChhhhhh------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-PV---------AMDIRELIS------ 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~--------~~~~~-~~---------~~~i~~~i~------ 58 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| +| ..++.+++.
T Consensus 290 e~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~ 369 (510)
T PRK09700 290 EILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLK 369 (510)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccc
Confidence 3689999999999999999999999999999999876421 12333 22 234444321
Q ss_pred -------------------HHHHHHHcCCC-CCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhH
Q 026486 59 -------------------LEDVMEELGLG-PNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTH 115 (238)
Q Consensus 59 -------------------~~~~l~~~~l~-~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~ 115 (238)
+.++++.+++. ...... ...+++|++ +.||++++. +|+++|+||||+ ||+.++
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~LSgGq~qrv~lAral~~--~p~lLlLDEPt~~LD~~~~ 445 (510)
T PRK09700 370 DGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQN--ITELSGGNQQKVLISKWLCC--CPEVIIFDEPTRGIDVGAK 445 (510)
T ss_pred cccccccccccChHHHHHHHHHHHHhcCCCCCCccCc--cccCChHHHHHHHHHHHHhc--CCCEEEECCCCCCcCHHHH
Confidence 35678888885 322211 245666654 999999999 999999999999 999999
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEecccccccchhHHHhhhHHHHHHH
Q 026486 116 VPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAM 161 (238)
Q Consensus 116 ~~~~~~ll~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~ 161 (238)
..++ +++++++++|.++|++ +|.......+++.+++...+.
T Consensus 446 ~~l~-~~l~~l~~~g~tvi~v----sHd~~~~~~~~d~i~~l~~G~ 486 (510)
T PRK09700 446 AEIY-KVMRQLADDGKVILMV----SSELPEIITVCDRIAVFCEGR 486 (510)
T ss_pred HHHH-HHHHHHHHCCCEEEEE----cCCHHHHHhhCCEEEEEECCE
Confidence 9999 9999987778888888 588887778877665544443
No 155
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.90 E-value=1.2e-23 Score=181.32 Aligned_cols=151 Identities=17% Similarity=0.243 Sum_probs=110.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-------CCCCC-CC------CCChhhhhh----------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV------AMDIRELIS---------- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~------~~~i~~~i~---------- 58 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| ++ ..++.+++.
T Consensus 28 e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~ 107 (256)
T TIGR03873 28 SLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLW 107 (256)
T ss_pred cEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEecccCccCCCCCHHHHHHhcchhhhhhc
Confidence 3689999999999999999999999999999999976421 12333 22 234555442
Q ss_pred ----------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 026486 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (238)
Q Consensus 59 ----------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~ 125 (238)
+.++++.+++....... ...++++++ +.||++++. +|+++|+||||+ ||+.++..+. +++++
T Consensus 108 ~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrl~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~ 182 (256)
T TIGR03873 108 AGDSPHDAAVVDRALARTELSHLADRD--MSTLSGGERQRVHVARALAQ--EPKLLLLDEPTNHLDVRAQLETL-ALVRE 182 (256)
T ss_pred cCCCHHHHHHHHHHHHHcCcHhhhcCC--cccCCHHHHHHHHHHHHHhc--CCCEEEEcCccccCCHHHHHHHH-HHHHH
Confidence 33456666765321111 123555543 899999999 999999999999 9999999999 99999
Q ss_pred HHhCCCeEEEEEecccccccchhHHHhhhHHHHHHHH
Q 026486 126 LKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMV 162 (238)
Q Consensus 126 l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~ 162 (238)
++++|.+++++ +|...+...+++.+++...+.+
T Consensus 183 ~~~~~~tiii~----sH~~~~~~~~~d~i~~l~~G~i 215 (256)
T TIGR03873 183 LAATGVTVVAA----LHDLNLAASYCDHVVVLDGGRV 215 (256)
T ss_pred HHhcCCEEEEE----eCCHHHHHHhCCEEEEEeCCCE
Confidence 87668888777 5888877777776655444443
No 156
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.90 E-value=7.2e-23 Score=171.35 Aligned_cols=130 Identities=20% Similarity=0.216 Sum_probs=99.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC----CCCCC-------CCCCChhhhhh------------H
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----ENFDY-------PVAMDIRELIS------------L 59 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~----~~~~~-------~~~~~i~~~i~------------~ 59 (238)
-+++|+||||||||||+++|+|+.+|++|+|.++|.+... ..++| .+..++.+++. +
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~ 108 (207)
T PRK13539 29 EALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVAENLEFWAAFLGGEELDI 108 (207)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecCCCcCCCCCcHHHHHHHHHHhcCCcHHHH
Confidence 3689999999999999999999999999999999876421 11222 22346666542 5
Q ss_pred HHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 026486 60 EDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (238)
Q Consensus 60 ~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~tvi~v 136 (238)
.++++.+|+.+... .....++++++ +.||++++. +|+++|+||||+ ||+.++..++ +++++++++|.+++++
T Consensus 109 ~~~l~~~~l~~~~~--~~~~~LS~G~~qrl~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~tiii~ 183 (207)
T PRK13539 109 AAALEAVGLAPLAH--LPFGYLSAGQKRRVALARLLVS--NRPIWILDEPTAALDAAAVALFA-ELIRAHLAQGGIVIAA 183 (207)
T ss_pred HHHHHHcCCHHHHc--CChhhcCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHCCCEEEEE
Confidence 66788888864321 11234555543 899999999 999999999999 9999999999 8898887678888777
Q ss_pred E
Q 026486 137 Y 137 (238)
Q Consensus 137 ~ 137 (238)
+
T Consensus 184 s 184 (207)
T PRK13539 184 T 184 (207)
T ss_pred e
Confidence 3
No 157
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=6.9e-24 Score=173.51 Aligned_cols=131 Identities=19% Similarity=0.227 Sum_probs=94.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC---------CCCCC-CCCCChhhhhhHHHHHHHcCCCCCC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------ENFDY-PVAMDIRELISLEDVMEELGLGPNG 72 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~---------~~~~~-~~~~~i~~~i~~~~~l~~~~l~~~~ 72 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| +++.......++.+.+...
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~------ 100 (178)
T cd03229 27 EIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG------ 100 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeec------
Confidence 4689999999999999999999999999999999876432 12233 2221111111222221110
Q ss_pred chhhhHHhhhhhH--HHHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC-CCeEEEEEecccccccchh
Q 026486 73 GLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFNVCAVYLLDSQFITDVT 148 (238)
Q Consensus 73 ~~~~~~~~~~~~~--s~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~~tvi~v~l~d~~~~~d~~ 148 (238)
+++++ ++.||++++. +|+++++|||++ ||+.++..++ +++++++++ +.+++++ +|...+..
T Consensus 101 --------lS~G~~qr~~la~al~~--~p~llilDEP~~~LD~~~~~~l~-~~l~~~~~~~~~tiii~----sH~~~~~~ 165 (178)
T cd03229 101 --------LSGGQQQRVALARALAM--DPDVLLLDEPTSALDPITRREVR-ALLKSLQAQLGITVVLV----THDLDEAA 165 (178)
T ss_pred --------CCHHHHHHHHHHHHHHC--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEE----eCCHHHHH
Confidence 33333 3899999999 999999999999 9999999999 999998776 7788777 47666555
Q ss_pred HHHhhh
Q 026486 149 KFISGC 154 (238)
Q Consensus 149 ~~~~~~ 154 (238)
++++.+
T Consensus 166 ~~~d~i 171 (178)
T cd03229 166 RLADRV 171 (178)
T ss_pred HhcCEE
Confidence 555543
No 158
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=1.6e-23 Score=196.90 Aligned_cols=156 Identities=16% Similarity=0.154 Sum_probs=117.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcC--CCceEEEeeecCCC--------CCCCC-C------CCCChhhhh--------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCET--VRRTMHIVNLDPAA--------ENFDY-P------VAMDIRELI-------- 57 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~--~~G~i~i~~~d~~~--------~~~~~-~------~~~~i~~~i-------- 57 (238)
-+++|+||||||||||+|+|+|+++| ++|+|.++|.++.. ..++| + +..++++++
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~ 111 (506)
T PRK13549 32 EIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITP 111 (506)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccc
Confidence 46899999999999999999999996 89999999976531 22333 1 233444432
Q ss_pred -----------hHHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHH
Q 026486 58 -----------SLEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV 123 (238)
Q Consensus 58 -----------~~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll 123 (238)
.++++++.+++...... ....++++++ ++||++++. +|+++|+||||+ ||+.++..++ +++
T Consensus 112 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~~~LSgGqkqrv~la~al~~--~p~lllLDEPt~~LD~~~~~~l~-~~l 186 (506)
T PRK13549 112 GGIMDYDAMYLRAQKLLAQLKLDINPAT--PVGNLGLGQQQLVEIAKALNK--QARLLILDEPTASLTESETAVLL-DII 186 (506)
T ss_pred cCCcCHHHHHHHHHHHHHHcCCCCCccc--chhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHH-HHH
Confidence 14667888888653222 2345666654 999999999 999999999999 9999999999 999
Q ss_pred HHHHhCCCeEEEEEecccccccchhHHHhhhHHHHHHHHhhcCC
Q 026486 124 DHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELP 167 (238)
Q Consensus 124 ~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~~~p 167 (238)
++++++|.++|++ +|.+.....+++.+++...+.+....+
T Consensus 187 ~~l~~~~~tvi~~----tH~~~~~~~~~d~v~~l~~G~i~~~~~ 226 (506)
T PRK13549 187 RDLKAHGIACIYI----SHKLNEVKAISDTICVIRDGRHIGTRP 226 (506)
T ss_pred HHHHHCCCEEEEE----eCcHHHHHHhcCEEEEEECCEEeeecc
Confidence 9987778888877 488887778888777665555444333
No 159
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.1e-23 Score=182.67 Aligned_cols=150 Identities=17% Similarity=0.334 Sum_probs=110.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-------CCCCC-C------CCCChhhhh-----------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-P------VAMDIRELI----------- 57 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~------~~~~i~~~i----------- 57 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| + +..++++++
T Consensus 34 e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~ 113 (265)
T PRK10253 34 HFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLF 113 (265)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccc
Confidence 3689999999999999999999999999999999976521 12333 1 123444433
Q ss_pred ---------hHHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 026486 58 ---------SLEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (238)
Q Consensus 58 ---------~~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~ 125 (238)
.+.++++.+++....... ...++++++ +.||++++. +|+++|+||||+ ||+.++..+. +++++
T Consensus 114 ~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~Gq~qrv~laral~~--~p~llllDEPt~gLD~~~~~~l~-~~L~~ 188 (265)
T PRK10253 114 TRWRKEDEEAVTKAMQATGITHLADQS--VDTLSGGQRQRAWIAMVLAQ--ETAIMLLDEPTTWLDISHQIDLL-ELLSE 188 (265)
T ss_pred cCCCHHHHHHHHHHHHHcCCHHHhcCC--cccCChHHHHHHHHHHHHhc--CCCEEEEeCccccCCHHHHHHHH-HHHHH
Confidence 144567777876422111 234555543 899999999 999999999999 9999999999 98999
Q ss_pred HHh-CCCeEEEEEecccccccchhHHHhhhHHHHHHH
Q 026486 126 LKS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAM 161 (238)
Q Consensus 126 l~~-~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~ 161 (238)
+.+ .|.++|++ +|.......+++.++....+.
T Consensus 189 l~~~~~~tiii~----tH~~~~~~~~~d~i~~l~~G~ 221 (265)
T PRK10253 189 LNREKGYTLAAV----LHDLNQACRYASHLIALREGK 221 (265)
T ss_pred HHHhcCCEEEEE----eCCHHHHHHhCCEEEEEECCE
Confidence 876 47888777 488887778877665444443
No 160
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=1.8e-23 Score=177.80 Aligned_cols=146 Identities=14% Similarity=0.124 Sum_probs=109.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-----CCCCC-------CCCCChhhhhh------------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDY-------PVAMDIRELIS------------ 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-----~~~~~-------~~~~~i~~~i~------------ 58 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..++| .+..++.+++.
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~ 106 (232)
T cd03300 27 EFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAE 106 (232)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEecccccCCCCcHHHHHHHHHHhcCCCHHH
Confidence 4789999999999999999999999999999999876531 22333 12345555543
Q ss_pred ----HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC-C
Q 026486 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-N 130 (238)
Q Consensus 59 ----~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~ 130 (238)
+.++++.+|+.+..... ...++++++ ++||++++. +|+++|+|||++ ||+.++..+. +++++++++ |
T Consensus 107 ~~~~~~~~l~~~~l~~~~~~~--~~~lS~G~~qrl~laral~~--~p~llllDEP~~gLD~~~~~~l~-~~l~~~~~~~~ 181 (232)
T cd03300 107 IKERVAEALDLVQLEGYANRK--PSQLSGGQQQRVAIARALVN--EPKVLLLDEPLGALDLKLRKDMQ-LELKRLQKELG 181 (232)
T ss_pred HHHHHHHHHHHcCCchhhcCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHHcC
Confidence 34567778887543222 234555543 899999999 999999999999 9999999999 999998764 8
Q ss_pred CeEEEEEecccccccchhHHHhhhHHH
Q 026486 131 FNVCAVYLLDSQFITDVTKFISGCMAS 157 (238)
Q Consensus 131 ~tvi~v~l~d~~~~~d~~~~~~~~l~~ 157 (238)
.|++++ +|...+...+++.++..
T Consensus 182 ~tiii~----sh~~~~~~~~~d~i~~l 204 (232)
T cd03300 182 ITFVFV----THDQEEALTMSDRIAVM 204 (232)
T ss_pred CEEEEE----eCCHHHHHHhcCEEEEE
Confidence 888877 48777666666655443
No 161
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.90 E-value=9.8e-24 Score=197.55 Aligned_cols=151 Identities=14% Similarity=0.163 Sum_probs=114.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-------CCCCC-CC--------------CCChhhhh---
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV--------------AMDIRELI--- 57 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~--------------~~~i~~~i--- 57 (238)
-+++|+||||||||||+|+|+|+++|++|+|.+.|.++.. ..++| ++ ..++++++
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (490)
T PRK10938 30 DSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE 109 (490)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhceeccCcchhhcccchhhccccHHHhcccc
Confidence 3689999999999999999999999999999998765421 11333 11 23455543
Q ss_pred -----hHHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC
Q 026486 58 -----SLEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR 129 (238)
Q Consensus 58 -----~~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~ 129 (238)
.+.++++.+|+.+..... ...++++++ ++||++++. +|+++|+||||+ ||+.++..++ +++++++++
T Consensus 110 ~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrv~la~al~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~ 184 (490)
T PRK10938 110 VKDPARCEQLAQQFGITALLDRR--FKYLSTGETRKTLLCQALMS--EPDLLILDEPFDGLDVASRQQLA-ELLASLHQS 184 (490)
T ss_pred hhHHHHHHHHHHHcCCHhhhhCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHHhc
Confidence 256788899997532221 245666654 999999999 999999999999 9999999999 999998777
Q ss_pred CCeEEEEEecccccccchhHHHhhhHHHHHHHH
Q 026486 130 NFNVCAVYLLDSQFITDVTKFISGCMASLSAMV 162 (238)
Q Consensus 130 ~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~ 162 (238)
|.++|++ +|.+.....+++.+++...+.+
T Consensus 185 g~tvii~----tH~~~~~~~~~d~v~~l~~G~i 213 (490)
T PRK10938 185 GITLVLV----LNRFDEIPDFVQFAGVLADCTL 213 (490)
T ss_pred CCeEEEE----eCCHHHHHhhCCEEEEEECCEE
Confidence 8888877 4777777777776655544443
No 162
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.4e-23 Score=180.26 Aligned_cols=151 Identities=18% Similarity=0.173 Sum_probs=107.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcC-----CCceEEEeeecCCC-------CCCCC-------CCCCChhhhhh-----
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA-------ENFDY-------PVAMDIRELIS----- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~-----~~G~i~i~~~d~~~-------~~~~~-------~~~~~i~~~i~----- 58 (238)
-+++|+||||||||||+++|+|+++| ++|+|.++|.++.. ..++| .+..++.+++.
T Consensus 30 e~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~ 109 (250)
T PRK14247 30 TITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKL 109 (250)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHh
Confidence 36899999999999999999999974 69999999976531 22333 22345665553
Q ss_pred -------------HHHHHHHcCCCCC--CchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHH
Q 026486 59 -------------LEDVMEELGLGPN--GGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (238)
Q Consensus 59 -------------~~~~l~~~~l~~~--~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~ 120 (238)
+.++++.+++.+. .........++++++ +++|++++. +|+++++||||+ ||+.++..+.
T Consensus 110 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~--~p~lllLDEP~~~LD~~~~~~l~- 186 (250)
T PRK14247 110 NRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAF--QPEVLLADEPTANLDPENTAKIE- 186 (250)
T ss_pred ccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHHHHHH-
Confidence 2445667777431 011111234555543 999999999 999999999999 9999999999
Q ss_pred HHHHHHHhCCCeEEEEEecccccccchhHHHhhhHHHHHHH
Q 026486 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAM 161 (238)
Q Consensus 121 ~ll~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~ 161 (238)
++++++++ +.+++++ +|.......+++.++....+.
T Consensus 187 ~~l~~~~~-~~tiii~----sH~~~~~~~~~d~i~~l~~G~ 222 (250)
T PRK14247 187 SLFLELKK-DMTIVLV----THFPQQAARISDYVAFLYKGQ 222 (250)
T ss_pred HHHHHHhc-CCEEEEE----eCCHHHHHHhcCEEEEEECCe
Confidence 88888854 7777777 487776666766555444433
No 163
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.90 E-value=8.2e-24 Score=196.31 Aligned_cols=159 Identities=18% Similarity=0.207 Sum_probs=126.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecC--CC-------C---------CCCCCCCCChhhhhh------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP--AA-------E---------NFDYPVAMDIRELIS------ 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~--~~-------~---------~~~~~~~~~i~~~i~------ 58 (238)
-+++|+|++||||||+.|+|+|+.+|++|.|.++|.+. .. . .....|..+|++.+.
T Consensus 318 E~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~ 397 (539)
T COG1123 318 ETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIH 397 (539)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhh
Confidence 36899999999999999999999999999999999762 10 0 111245567776654
Q ss_pred -----------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHH
Q 026486 59 -----------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD 124 (238)
Q Consensus 59 -----------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~ 124 (238)
+.++++.+|+++.-..+|+ ..++++++ ++|||+|+. +|+++|+|||++ ||+..+.+++ ++++
T Consensus 398 ~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP-~elSGGQrQRvaIARALa~--~P~lli~DEp~SaLDvsvqa~Vl-nLl~ 473 (539)
T COG1123 398 GGGSGAERRARVAELLELVGLPPEFLDRYP-HELSGGQRQRVAIARALAL--EPKLLILDEPVSALDVSVQAQVL-NLLK 473 (539)
T ss_pred cccchHHHHHHHHHHHHHcCCCHHHHhcCc-hhcCcchhHHHHHHHHHhc--CCCEEEecCCccccCHHHHHHHH-HHHH
Confidence 6778999999976444555 45666654 999999999 999999999999 9999999999 9999
Q ss_pred HHHh-CCCeEEEEEecccccccchhHHHhhhHHHHHHHHhhcCCee
Q 026486 125 HLKS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHV 169 (238)
Q Consensus 125 ~l~~-~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~~~p~~ 169 (238)
++++ .|.+.++| ||++.-...+++++.++..|.+....|.-
T Consensus 474 ~lq~e~g~t~lfI----SHDl~vV~~i~drv~vm~~G~iVE~G~~~ 515 (539)
T COG1123 474 DLQEELGLTYLFI----SHDLAVVRYIADRVAVMYDGRIVEEGPTE 515 (539)
T ss_pred HHHHHhCCEEEEE----eCCHHHHHhhCceEEEEECCeEEEeCCHH
Confidence 9986 49999998 58888777888877666666665555443
No 164
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.90 E-value=7.5e-24 Score=182.88 Aligned_cols=147 Identities=14% Similarity=0.177 Sum_probs=107.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeec-----CCC-----------CCCCC-CCC--------CChhhhh
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-----PAA-----------ENFDY-PVA--------MDIRELI 57 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d-----~~~-----------~~~~~-~~~--------~~i~~~i 57 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.+ +.. ..++| +++ .++.+++
T Consensus 33 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i 112 (258)
T PRK11701 33 EVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNI 112 (258)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHH
Confidence 3689999999999999999999999999999999976 321 12344 221 2333222
Q ss_pred -----------------hHHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHH
Q 026486 58 -----------------SLEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVP 117 (238)
Q Consensus 58 -----------------~~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~ 117 (238)
.+.++++.+++.+.. .......++++++ ++||++++. +|+++|+||||+ ||+.++..
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~LS~Gq~qrl~laral~~--~p~llllDEPt~~LD~~~~~~ 189 (258)
T PRK11701 113 GERLMAVGARHYGDIRATAGDWLERVEIDAAR-IDDLPTTFSGGMQQRLQIARNLVT--HPRLVFMDEPTGGLDVSVQAR 189 (258)
T ss_pred HHHHHHhccCcHHHHHHHHHHHHHHcCCChhH-HhCCCccCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHH
Confidence 145677888886311 0111234555543 899999999 999999999999 99999999
Q ss_pred HHHHHHHHHHhC-CCeEEEEEecccccccchhHHHhhhHHH
Q 026486 118 VLRNFVDHLKSR-NFNVCAVYLLDSQFITDVTKFISGCMAS 157 (238)
Q Consensus 118 ~~~~ll~~l~~~-~~tvi~v~l~d~~~~~d~~~~~~~~l~~ 157 (238)
+. ++++++.++ |.++|++ +|.......+++.+++.
T Consensus 190 l~-~~l~~~~~~~~~tii~i----sH~~~~~~~~~d~i~~l 225 (258)
T PRK11701 190 LL-DLLRGLVRELGLAVVIV----THDLAVARLLAHRLLVM 225 (258)
T ss_pred HH-HHHHHHHHhcCcEEEEE----eCCHHHHHHhcCEEEEE
Confidence 99 888888654 7888877 48887777776654433
No 165
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.90 E-value=6.2e-24 Score=174.11 Aligned_cols=140 Identities=19% Similarity=0.260 Sum_probs=103.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCCCCCCCCCCCChhhhhh-HHHHHHHcCCCCCCchhhhHHhh
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELIS-LEDVMEELGLGPNGGLIYCMEHL 81 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~~~~~~i~~~i~-~~~~l~~~~l~~~~~~~~~~~~~ 81 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.++...... ..+..+. +.++++.+|+.+..... ...+
T Consensus 26 ~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~-----~~~~~i~~~~q~l~~~gl~~~~~~~--~~~L 98 (180)
T cd03214 26 EIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPK-----ELARKIAYVPQALELLGLAHLADRP--FNEL 98 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHH-----HHHHHHhHHHHHHHHcCCHhHhcCC--cccC
Confidence 36899999999999999999999999999999998765321100 1111121 23378888886532111 2335
Q ss_pred hhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC-CCeEEEEEecccccccchhHHHhhhHH
Q 026486 82 EDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFNVCAVYLLDSQFITDVTKFISGCMA 156 (238)
Q Consensus 82 ~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~~tvi~v~l~d~~~~~d~~~~~~~~l~ 156 (238)
+++++ ++||++++. +|+++|+||||+ ||+.++..+. +++++++++ +.+++++ +|...+...+++.++.
T Consensus 99 S~G~~qrl~laral~~--~p~llllDEP~~~LD~~~~~~~~-~~l~~~~~~~~~tiii~----sh~~~~~~~~~d~~~~ 170 (180)
T cd03214 99 SGGERQRVLLARALAQ--EPPILLLDEPTSHLDIAHQIELL-ELLRRLARERGKTVVMV----LHDLNLAARYADRVIL 170 (180)
T ss_pred CHHHHHHHHHHHHHhc--CCCEEEEeCCccCCCHHHHHHHH-HHHHHHHHhcCCEEEEE----eCCHHHHHHhCCEEEE
Confidence 55543 899999999 999999999998 9999999999 899998765 7788777 4777766666665443
No 166
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.90 E-value=1.9e-23 Score=192.64 Aligned_cols=156 Identities=17% Similarity=0.184 Sum_probs=124.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC---------------CCCCCCCCCChhhhhh---------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------------ENFDYPVAMDIRELIS--------- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~---------------~~~~~~~~~~i~~~i~--------- 58 (238)
-+++++|.||||||||+|+|+|.++|++|+|.++|..... +.+...|++++.+|+.
T Consensus 35 EV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~ 114 (500)
T COG1129 35 EVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRF 114 (500)
T ss_pred eEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcEEEeechhccCCccHHHHhhcccccccCC
Confidence 4789999999999999999999999999999999976531 3444456777777763
Q ss_pred -----------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHH
Q 026486 59 -----------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD 124 (238)
Q Consensus 59 -----------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~ 124 (238)
+.++|+++++... .......++-..+ ++||+|+.. +++++||||||+ |.....+.++ ++++
T Consensus 115 g~id~~~m~~~A~~~l~~lg~~~~--~~~~v~~LsiaqrQ~VeIArAl~~--~arllIlDEPTaaLt~~E~~~Lf-~~ir 189 (500)
T COG1129 115 GLIDRKAMRRRARELLARLGLDID--PDTLVGDLSIAQRQMVEIARALSF--DARVLILDEPTAALTVKETERLF-DLIR 189 (500)
T ss_pred CccCHHHHHHHHHHHHHHcCCCCC--hhhhhhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHH
Confidence 6778888887511 1111222332222 999999999 999999999999 9999999999 9999
Q ss_pred HHHhCCCeEEEEEecccccccchhHHHhhhHHHHHHHHhhcCC
Q 026486 125 HLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELP 167 (238)
Q Consensus 125 ~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~~~p 167 (238)
+|+++|.++|+| ||.+.+.-..++++.+...|...-..|
T Consensus 190 ~Lk~~Gv~ii~I----SHrl~Ei~~i~DritVlRDG~~v~~~~ 228 (500)
T COG1129 190 RLKAQGVAIIYI----SHRLDEVFEIADRITVLRDGRVVGTRP 228 (500)
T ss_pred HHHhCCCEEEEE----cCcHHHHHHhcCEEEEEeCCEEeeecc
Confidence 999999999999 699999999999887776666555444
No 167
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.89 E-value=8e-24 Score=184.21 Aligned_cols=145 Identities=14% Similarity=0.259 Sum_probs=107.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC----CCCCC-CCC--------CChhhhh------------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----ENFDY-PVA--------MDIRELI------------ 57 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~----~~~~~-~~~--------~~i~~~i------------ 57 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..++| +++ .++++++
T Consensus 34 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 113 (272)
T PRK15056 34 SIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLR 113 (272)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEeccccccccCCCcchhhheeccccccccccc
Confidence 3689999999999999999999999999999999876421 12333 111 1122221
Q ss_pred --------hHHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 026486 58 --------SLEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (238)
Q Consensus 58 --------~~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l 126 (238)
.+.++++.+|+.+..... ...++++++ +.||++++. +|+++|+|||++ ||+.++..+. ++++++
T Consensus 114 ~~~~~~~~~~~~~l~~~gl~~~~~~~--~~~LSgG~~qrv~laraL~~--~p~llllDEPt~~LD~~~~~~l~-~~L~~~ 188 (272)
T PRK15056 114 RAKKRDRQIVTAALARVDMVEFRHRQ--IGELSGGQKKRVFLARAIAQ--QGQVILLDEPFTGVDVKTEARII-SLLREL 188 (272)
T ss_pred CCCHHHHHHHHHHHHHcCChhHhcCC--cccCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH-HHHHHH
Confidence 145677888886432221 234555543 899999999 999999999999 9999999999 999998
Q ss_pred HhCCCeEEEEEecccccccchhHHHhhhHH
Q 026486 127 KSRNFNVCAVYLLDSQFITDVTKFISGCMA 156 (238)
Q Consensus 127 ~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~ 156 (238)
+++|.++|++ +|.......+++.+++
T Consensus 189 ~~~g~tviiv----sH~~~~~~~~~d~v~~ 214 (272)
T PRK15056 189 RDEGKTMLVS----THNLGSVTEFCDYTVM 214 (272)
T ss_pred HhCCCEEEEE----eCCHHHHHHhCCEEEE
Confidence 7678888777 4877777777776543
No 168
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=1.6e-23 Score=178.46 Aligned_cols=145 Identities=17% Similarity=0.192 Sum_probs=107.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-----CCCCC-------CCCCChhhhhh------------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDY-------PVAMDIRELIS------------ 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-----~~~~~-------~~~~~i~~~i~------------ 58 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| .+..++.+++.
T Consensus 26 e~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~ 105 (235)
T cd03299 26 DYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKE 105 (235)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHHHHHHHHcCCCHHH
Confidence 3689999999999999999999999999999999976532 12222 22345555443
Q ss_pred ----HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC-C
Q 026486 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-N 130 (238)
Q Consensus 59 ----~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~ 130 (238)
+.++++.+++.+..... ...++++++ ++||++++. +|+++++|||++ ||+.++..+. ++++++.++ +
T Consensus 106 ~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrl~laral~~--~p~llllDEPt~gLD~~~~~~l~-~~l~~~~~~~~ 180 (235)
T cd03299 106 IERKVLEIAEMLGIDHLLNRK--PETLSGGEQQRVAIARALVV--NPKILLLDEPFSALDVRTKEKLR-EELKKIRKEFG 180 (235)
T ss_pred HHHHHHHHHHHcCChhHHhcC--cccCCHHHHHHHHHHHHHHc--CCCEEEECCCcccCCHHHHHHHH-HHHHHHHHhcC
Confidence 34567788886432211 234555543 999999999 999999999999 9999999999 888888654 8
Q ss_pred CeEEEEEecccccccchhHHHhhhHH
Q 026486 131 FNVCAVYLLDSQFITDVTKFISGCMA 156 (238)
Q Consensus 131 ~tvi~v~l~d~~~~~d~~~~~~~~l~ 156 (238)
.+++++ +|.......+++.++.
T Consensus 181 ~tili~----tH~~~~~~~~~d~i~~ 202 (235)
T cd03299 181 VTVLHV----THDFEEAWALADKVAI 202 (235)
T ss_pred CEEEEE----ecCHHHHHHhCCEEEE
Confidence 888777 4877766666664443
No 169
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.89 E-value=1.8e-23 Score=178.45 Aligned_cols=146 Identities=16% Similarity=0.220 Sum_probs=108.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-----CCCCC-------CCCCChhhhhh------------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDY-------PVAMDIRELIS------------ 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-----~~~~~-------~~~~~i~~~i~------------ 58 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| .+..++.+++.
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~ 106 (237)
T TIGR00968 27 SLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAK 106 (237)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHHHHHHhHHHhcCCCHHH
Confidence 3789999999999999999999999999999999877532 22333 12335555442
Q ss_pred ----HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC-C
Q 026486 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-N 130 (238)
Q Consensus 59 ----~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~ 130 (238)
+.++++.+++.+..... ...++++++ +.+|++++. +|+++++|||++ ||+.++..+. +++++++++ +
T Consensus 107 ~~~~~~~~l~~~~l~~~~~~~--~~~lS~G~~qrl~laral~~--~p~llllDEP~~~LD~~~~~~~~-~~l~~~~~~~~ 181 (237)
T TIGR00968 107 IKARVEELLELVQLEGLGDRY--PNQLSGGQRQRVALARALAV--EPQVLLLDEPFGALDAKVRKELR-SWLRKLHDEVH 181 (237)
T ss_pred HHHHHHHHHHHcCCHhHhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHhcC
Confidence 35667777775432111 123455443 899999999 999999999999 9999999999 889888765 7
Q ss_pred CeEEEEEecccccccchhHHHhhhHHH
Q 026486 131 FNVCAVYLLDSQFITDVTKFISGCMAS 157 (238)
Q Consensus 131 ~tvi~v~l~d~~~~~d~~~~~~~~l~~ 157 (238)
.+++++ ||...+..++++.++..
T Consensus 182 ~tvli~----sH~~~~~~~~~d~i~~l 204 (237)
T TIGR00968 182 VTTVFV----THDQEEAMEVADRIVVM 204 (237)
T ss_pred CEEEEE----eCCHHHHHhhcCEEEEE
Confidence 888777 48777666777655443
No 170
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.89 E-value=1.2e-23 Score=180.83 Aligned_cols=146 Identities=15% Similarity=0.180 Sum_probs=105.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeec-----CCC-----------CCCCC-CC--------CCChhhhh
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-----PAA-----------ENFDY-PV--------AMDIRELI 57 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d-----~~~-----------~~~~~-~~--------~~~i~~~i 57 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.+ +.. ..++| ++ ..++.+++
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i 109 (253)
T TIGR02323 30 EVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANI 109 (253)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHHHhhhcceEEEEeCcccccCccccHHHHH
Confidence 4689999999999999999999999999999999865 311 12333 21 12222222
Q ss_pred -----------------hHHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHH
Q 026486 58 -----------------SLEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVP 117 (238)
Q Consensus 58 -----------------~~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~ 117 (238)
.+.++++.+++.+.. .......++++++ ++||++++. +|+++|+|||++ ||+.++..
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~-~~~~~~~LSgG~~qrv~laral~~--~p~vlllDEP~~~LD~~~~~~ 186 (253)
T TIGR02323 110 GERLMAIGARHYGNIRAAAHDWLEEVEIDPTR-IDDLPRAFSGGMQQRLQIARNLVT--RPRLVFMDEPTGGLDVSVQAR 186 (253)
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHcCCChhh-hhcCchhcCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHHHH
Confidence 145667888885311 1111234555543 999999999 999999999999 99999999
Q ss_pred HHHHHHHHHHh-CCCeEEEEEecccccccchhHHHhhhHH
Q 026486 118 VLRNFVDHLKS-RNFNVCAVYLLDSQFITDVTKFISGCMA 156 (238)
Q Consensus 118 ~~~~ll~~l~~-~~~tvi~v~l~d~~~~~d~~~~~~~~l~ 156 (238)
+. ++++++.+ .|.++|++ +|.......+++.++.
T Consensus 187 l~-~~l~~~~~~~~~tii~v----sH~~~~~~~~~d~~~~ 221 (253)
T TIGR02323 187 LL-DLLRGLVRDLGLAVIIV----THDLGVARLLAQRLLV 221 (253)
T ss_pred HH-HHHHHHHHhcCCEEEEE----eCCHHHHHHhcCEEEE
Confidence 99 88888765 48888888 4777666666664443
No 171
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=1.5e-23 Score=187.11 Aligned_cols=158 Identities=13% Similarity=0.184 Sum_probs=118.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCc----CCCceEEEeeecCCC-----------CCCCC-C--------CCCChhhhh-
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCE----TVRRTMHIVNLDPAA-----------ENFDY-P--------VAMDIRELI- 57 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~----~~~G~i~i~~~d~~~-----------~~~~~-~--------~~~~i~~~i- 57 (238)
-+++|+|+||||||||+++|+|+++ +++|+|.++|.++.. ..++| + +.+++.+++
T Consensus 34 e~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~ 113 (326)
T PRK11022 34 EVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIM 113 (326)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHH
Confidence 3689999999999999999999997 489999999987632 12333 2 223443322
Q ss_pred ----------------hHHHHHHHcCCCCCCc--hhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHH
Q 026486 58 ----------------SLEDVMEELGLGPNGG--LIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHV 116 (238)
Q Consensus 58 ----------------~~~~~l~~~~l~~~~~--~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~ 116 (238)
.+.++++.+|+.+... ..+. ..++++++ ++||++++. +|+++|+||||+ ||+.++.
T Consensus 114 ~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p-~~LSgGq~QRv~iArAL~~--~P~llilDEPts~LD~~~~~ 190 (326)
T PRK11022 114 EAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYP-HQLSGGMSQRVMIAMAIAC--RPKLLIADEPTTALDVTIQA 190 (326)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCc-hhCCHHHHHHHHHHHHHHh--CCCEEEEeCCCCCCCHHHHH
Confidence 1567788899964211 1122 34666654 999999999 999999999999 9999999
Q ss_pred HHHHHHHHHHHh-CCCeEEEEEecccccccchhHHHhhhHHHHHHHHhhcCCe
Q 026486 117 PVLRNFVDHLKS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPH 168 (238)
Q Consensus 117 ~~~~~ll~~l~~-~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~~~p~ 168 (238)
+++ ++++++++ .|.++++| +|.+.....+++.++++..+.+....+.
T Consensus 191 ~il-~lL~~l~~~~g~til~i----THdl~~~~~~adri~vm~~G~ive~g~~ 238 (326)
T PRK11022 191 QII-ELLLELQQKENMALVLI----THDLALVAEAAHKIIVMYAGQVVETGKA 238 (326)
T ss_pred HHH-HHHHHHHHhcCCEEEEE----eCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 999 99999976 58899888 4888888888887777666666544444
No 172
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.89 E-value=2.8e-23 Score=194.57 Aligned_cols=151 Identities=11% Similarity=0.152 Sum_probs=113.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC--------CCCCC-CC------CCChhhhhh---------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-PV------AMDIRELIS--------- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~--------~~~~~-~~------~~~i~~~i~--------- 58 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| +| ..++++++.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~ 104 (491)
T PRK10982 25 SIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGM 104 (491)
T ss_pred cEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCCHHHHhhccccccccc
Confidence 3689999999999999999999999999999999976521 22333 22 234444331
Q ss_pred ----------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 026486 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (238)
Q Consensus 59 ----------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~ 125 (238)
+.++++.+++...... ....++++++ ++||++++. +|+++|+||||+ ||+.++..++ +++++
T Consensus 105 ~~~~~~~~~~~~~~l~~~~l~~~~~~--~~~~LSgGq~qrv~lA~al~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~ 179 (491)
T PRK10982 105 FVDQDKMYRDTKAIFDELDIDIDPRA--KVATLSVSQMQMIEIAKAFSY--NAKIVIMDEPTSSLTEKEVNHLF-TIIRK 179 (491)
T ss_pred ccCHHHHHHHHHHHHHHcCCCCCccC--chhhCCHHHHHHHHHHHHHHh--CCCEEEEeCCCCCCCHHHHHHHH-HHHHH
Confidence 4567778888643222 1345666654 999999999 999999999999 9999999999 89999
Q ss_pred HHhCCCeEEEEEecccccccchhHHHhhhHHHHHHHH
Q 026486 126 LKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMV 162 (238)
Q Consensus 126 l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~ 162 (238)
+++.|.++|++ +|...+...+++.+++...+.+
T Consensus 180 l~~~g~tvii~----tH~~~~~~~~~d~i~~l~~G~i 212 (491)
T PRK10982 180 LKERGCGIVYI----SHKMEEIFQLCDEITILRDGQW 212 (491)
T ss_pred HHhCCCEEEEE----ecCHHHHHHhCCEEEEEECCEE
Confidence 87778888877 4777777777776655544433
No 173
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.89 E-value=1.3e-23 Score=171.06 Aligned_cols=124 Identities=19% Similarity=0.230 Sum_probs=90.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-------CCCCC-CCCCChhhhhhHHHHHHHcCCCCCCchh
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PVAMDIRELISLEDVMEELGLGPNGGLI 75 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~~~~i~~~i~~~~~l~~~~l~~~~~~~ 75 (238)
+++|+||||||||||+++|+|+++|++|+|.++|.+... ..++| +++..+... ++.+.+
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~~~l------------ 96 (173)
T cd03246 30 SLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSG-SIAENI------------ 96 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCCccccC-cHHHHC------------
Confidence 689999999999999999999999999999999976532 22333 222111110 122211
Q ss_pred hhHHhhhhh--HHHHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccchhHHHh
Q 026486 76 YCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (238)
Q Consensus 76 ~~~~~~~~~--~s~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~tvi~v~l~d~~~~~d~~~~~~ 152 (238)
++++ +++.||++++. +|+++|+||||+ ||+.++..+. +++++++++|.++++++ |..... .+++
T Consensus 97 -----LS~G~~qrv~la~al~~--~p~~lllDEPt~~LD~~~~~~l~-~~l~~~~~~~~tii~~s----h~~~~~-~~~d 163 (173)
T cd03246 97 -----LSGGQRQRLGLARALYG--NPRILVLDEPNSHLDVEGERALN-QAIAALKAAGATRIVIA----HRPETL-ASAD 163 (173)
T ss_pred -----cCHHHHHHHHHHHHHhc--CCCEEEEECCccccCHHHHHHHH-HHHHHHHhCCCEEEEEe----CCHHHH-HhCC
Confidence 3333 33999999999 999999999999 9999999999 88998876788887773 665433 3444
Q ss_pred h
Q 026486 153 G 153 (238)
Q Consensus 153 ~ 153 (238)
.
T Consensus 164 ~ 164 (173)
T cd03246 164 R 164 (173)
T ss_pred E
Confidence 3
No 174
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=1.6e-23 Score=182.03 Aligned_cols=149 Identities=11% Similarity=0.141 Sum_probs=107.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-------CCCCC-CC-------CCChhhhh----------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-------AMDIRELI---------- 57 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~-------~~~i~~~i---------- 57 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| ++ ..++.+++
T Consensus 36 e~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~ 115 (269)
T PRK13648 36 QWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVP 115 (269)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhcCCC
Confidence 3689999999999999999999999999999999977532 22333 22 12333322
Q ss_pred ------hHHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 026486 58 ------SLEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (238)
Q Consensus 58 ------~~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (238)
.+.++++.+++.+..... ...++++++ +.||++++. +|+++|+||||+ ||+.++..++ ++++++.+
T Consensus 116 ~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrl~laral~~--~p~lllLDEPt~~LD~~~~~~l~-~~L~~~~~ 190 (269)
T PRK13648 116 YDEMHRRVSEALKQVDMLERADYE--PNALSGGQKQRVAIAGVLAL--NPSVIILDEATSMLDPDARQNLL-DLVRKVKS 190 (269)
T ss_pred HHHHHHHHHHHHHHcCCchhhhCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHH
Confidence 145678888886532221 124555543 899999999 999999999999 9999999999 88888875
Q ss_pred C-CCeEEEEEecccccccchhHHHhhhHHHHHHH
Q 026486 129 R-NFNVCAVYLLDSQFITDVTKFISGCMASLSAM 161 (238)
Q Consensus 129 ~-~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~ 161 (238)
+ |.+++++ +|...+... ++.+++...+.
T Consensus 191 ~~~~tiiiv----tH~~~~~~~-~d~i~~l~~G~ 219 (269)
T PRK13648 191 EHNITIISI----THDLSEAME-ADHVIVMNKGT 219 (269)
T ss_pred hcCCEEEEE----ecCchHHhc-CCEEEEEECCE
Confidence 4 7888777 477665443 55444433333
No 175
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.89 E-value=2.9e-23 Score=175.78 Aligned_cols=145 Identities=21% Similarity=0.318 Sum_probs=104.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCc---CCCceEEEeeecCCC----CCCCC-------CCCCChhhhhhH---------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCE---TVRRTMHIVNLDPAA----ENFDY-------PVAMDIRELISL--------- 59 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~---~~~G~i~i~~~d~~~----~~~~~-------~~~~~i~~~i~~--------- 59 (238)
-+++|+||||||||||+++|+|+++ |++|+|.++|.++.. ..++| .+..++++++..
T Consensus 34 e~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~ 113 (226)
T cd03234 34 QVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRK 113 (226)
T ss_pred eEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccc
Confidence 3689999999999999999999999 899999999977532 22333 233466666541
Q ss_pred ----------HH-HHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 026486 60 ----------ED-VMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (238)
Q Consensus 60 ----------~~-~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~ 125 (238)
.+ .++.+++.+..... ...++++++ +++|++++. +|+++|+|||++ ||+.++..+. +++++
T Consensus 114 ~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrl~laral~~--~p~illlDEP~~gLD~~~~~~~~-~~l~~ 188 (226)
T cd03234 114 SSDAIRKKRVEDVLLRDLALTRIGGNL--VKGISGGERRRVSIAVQLLW--DPKVLILDEPTSGLDSFTALNLV-STLSQ 188 (226)
T ss_pred cchHHHHHHHHHHHHHhhcchhhhccc--ccCcCHHHHHHHHHHHHHHh--CCCEEEEeCCCcCCCHHHHHHHH-HHHHH
Confidence 12 34445544321111 123444433 899999999 999999999999 9999999999 89998
Q ss_pred HHhCCCeEEEEEecccccc-cchhHHHhhhHH
Q 026486 126 LKSRNFNVCAVYLLDSQFI-TDVTKFISGCMA 156 (238)
Q Consensus 126 l~~~~~tvi~v~l~d~~~~-~d~~~~~~~~l~ 156 (238)
+++++.+++++ +|.. .+...+++.+++
T Consensus 189 ~~~~~~tiii~----sh~~~~~~~~~~d~i~~ 216 (226)
T cd03234 189 LARRNRIVILT----IHQPRSDLFRLFDRILL 216 (226)
T ss_pred HHHCCCEEEEE----ecCCCHHHHHhCCEEEE
Confidence 87667888777 4776 356666665543
No 176
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.89 E-value=1.2e-23 Score=180.88 Aligned_cols=147 Identities=17% Similarity=0.226 Sum_probs=103.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCc-----CCCceEEEeeecCCC---------CCCCC-CCC-----CChhhhhh----
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPAA---------ENFDY-PVA-----MDIRELIS---- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~-----~~~G~i~i~~~d~~~---------~~~~~-~~~-----~~i~~~i~---- 58 (238)
-+++|+||||||||||+++|+|+++ |++|+|.++|.++.. ..++| +++ .++++++.
T Consensus 33 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~ 112 (253)
T PRK14242 33 QVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFPKSIFENVAYGLR 112 (253)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCCCCcCcHHHHHHHHHH
Confidence 3689999999999999999999874 589999999976531 22344 221 25555543
Q ss_pred -------------HHHHHHHcCCCCC--CchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHH
Q 026486 59 -------------LEDVMEELGLGPN--GGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (238)
Q Consensus 59 -------------~~~~l~~~~l~~~--~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~ 120 (238)
+.++++.+++.+. .........++++++ ++||++++. +|+++|+||||+ ||+.++..+.
T Consensus 113 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~- 189 (253)
T PRK14242 113 VNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAV--EPEVLLMDEPASALDPIATQKIE- 189 (253)
T ss_pred HcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-
Confidence 2334556666421 000011123555543 899999999 999999999999 9999999999
Q ss_pred HHHHHHHhCCCeEEEEEecccccccchhHHHhhhHHH
Q 026486 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMAS 157 (238)
Q Consensus 121 ~ll~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~ 157 (238)
++++++++ +.+++++ +|...+...+++.+++.
T Consensus 190 ~~l~~~~~-~~tvii~----tH~~~~~~~~~d~v~~l 221 (253)
T PRK14242 190 ELIHELKA-RYTIIIV----THNMQQAARVSDVTAFF 221 (253)
T ss_pred HHHHHHhc-CCeEEEE----EecHHHHHHhCCEEEEE
Confidence 99999854 6788777 48777766766655443
No 177
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=9.8e-24 Score=183.56 Aligned_cols=149 Identities=12% Similarity=0.162 Sum_probs=108.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-------CCCCC-CC-------CCChhhhhh---------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-------AMDIRELIS--------- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~-------~~~i~~~i~--------- 58 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| ++ ..++++++.
T Consensus 36 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~ 115 (271)
T PRK13632 36 EYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVP 115 (271)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHcCCC
Confidence 3689999999999999999999999999999999977532 22344 21 245666553
Q ss_pred -------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 026486 59 -------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (238)
Q Consensus 59 -------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (238)
+.++++.+++.+..... ...++++++ +.||++++. +|+++|+|||++ ||+.++..++ ++++++++
T Consensus 116 ~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrl~laral~~--~p~lllLDEP~~gLD~~~~~~l~-~~l~~~~~ 190 (271)
T PRK13632 116 PKKMKDIIDDLAKKVGMEDYLDKE--PQNLSGGQKQRVAIASVLAL--NPEIIIFDESTSMLDPKGKREIK-KIMVDLRK 190 (271)
T ss_pred HHHHHHHHHHHHHHcCCHHHhhCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHH
Confidence 34567778886432111 134555543 899999999 999999999999 9999999999 99999876
Q ss_pred C-CCeEEEEEecccccccchhHHHhhhHHHHHHH
Q 026486 129 R-NFNVCAVYLLDSQFITDVTKFISGCMASLSAM 161 (238)
Q Consensus 129 ~-~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~ 161 (238)
+ +.+++++ +|...+.. +++.+++...+.
T Consensus 191 ~~~~tiii~----sH~~~~~~-~~d~v~~l~~G~ 219 (271)
T PRK13632 191 TRKKTLISI----THDMDEAI-LADKVIVFSEGK 219 (271)
T ss_pred hcCcEEEEE----EechhHHh-hCCEEEEEECCE
Confidence 5 4788777 46665443 455444433333
No 178
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.89 E-value=1.5e-23 Score=181.78 Aligned_cols=151 Identities=19% Similarity=0.202 Sum_probs=122.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC------------------CCCCCCCCCChhhhhh------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------------------ENFDYPVAMDIRELIS------ 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~------------------~~~~~~~~~~i~~~i~------ 58 (238)
-+.+|+|-+|||||||+++++++++|++|+|.++|.|+.. ++++..|..++.+++.
T Consensus 55 eIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~ 134 (386)
T COG4175 55 EIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ 134 (386)
T ss_pred eEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeec
Confidence 4678999999999999999999999999999999998853 4455566777777764
Q ss_pred ----------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 026486 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (238)
Q Consensus 59 ----------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~ 125 (238)
+.++++.+||....... . +.++++++ +.|||||+. +|++|++|||++ |||-.+.++- +-+.+
T Consensus 135 Gv~~~er~~~a~~~l~~VgL~~~~~~y-p-~eLSGGMqQRVGLARAla~--~~~IlLMDEaFSALDPLIR~~mQ-deLl~ 209 (386)
T COG4175 135 GVPKAEREERALEALELVGLEGYADKY-P-NELSGGMQQRVGLARALAN--DPDILLMDEAFSALDPLIRTEMQ-DELLE 209 (386)
T ss_pred CCCHHHHHHHHHHHHHHcCchhhhhcC-c-ccccchHHHHHHHHHHHcc--CCCEEEecCchhhcChHHHHHHH-HHHHH
Confidence 78899999998764332 2 45777764 999999999 999999999998 9999999988 55666
Q ss_pred HHh-CCCeEEEEEecccccccchhHHHhhhHHHHHHHH
Q 026486 126 LKS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMV 162 (238)
Q Consensus 126 l~~-~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~ 162 (238)
|++ .++|+++| ||.+.+.-++=+++..+..|.+
T Consensus 210 Lq~~l~KTIvFi----tHDLdEAlriG~rIaimkdG~i 243 (386)
T COG4175 210 LQAKLKKTIVFI----THDLDEALRIGDRIAIMKDGEI 243 (386)
T ss_pred HHHHhCCeEEEE----ecCHHHHHhccceEEEecCCeE
Confidence 654 58999999 4888888777666665555544
No 179
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.89 E-value=2.6e-23 Score=179.19 Aligned_cols=147 Identities=14% Similarity=0.218 Sum_probs=106.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcC----CCceEEEeeecCCC-----CCCCC-C--------CCCChhhhh-------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCET----VRRTMHIVNLDPAA-----ENFDY-P--------VAMDIRELI------- 57 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~----~~G~i~i~~~d~~~-----~~~~~-~--------~~~~i~~~i------- 57 (238)
-+++|+||||||||||+++|+|+++| ++|+|.++|.++.. ..++| + +..++.+++
T Consensus 30 e~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~ 109 (254)
T PRK10418 30 RVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLAL 109 (254)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCccccHHHHHHHHHHHc
Confidence 36899999999999999999999999 99999999876421 12333 1 122332221
Q ss_pred -------hHHHHHHHcCCCCCCc-hhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 026486 58 -------SLEDVMEELGLGPNGG-LIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (238)
Q Consensus 58 -------~~~~~l~~~~l~~~~~-~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l 126 (238)
.+.++++.+++.+... .......++++++ +.||++++. +|+++|+|||++ ||+.++..+. ++++++
T Consensus 110 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~--~p~lLlLDEPt~~LD~~~~~~l~-~~L~~~ 186 (254)
T PRK10418 110 GKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLC--EAPFIIADEPTTDLDVVAQARIL-DLLESI 186 (254)
T ss_pred CCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhc--CCCEEEEeCCCcccCHHHHHHHH-HHHHHH
Confidence 1566788888865210 0111234555543 899999999 999999999999 9999999999 889888
Q ss_pred Hh-CCCeEEEEEecccccccchhHHHhhhHH
Q 026486 127 KS-RNFNVCAVYLLDSQFITDVTKFISGCMA 156 (238)
Q Consensus 127 ~~-~~~tvi~v~l~d~~~~~d~~~~~~~~l~ 156 (238)
.+ .|.+++++ +|...+...+++.+++
T Consensus 187 ~~~~g~til~~----sH~~~~~~~~~d~v~~ 213 (254)
T PRK10418 187 VQKRALGMLLV----THDMGVVARLADDVAV 213 (254)
T ss_pred HHhcCcEEEEE----ecCHHHHHHhCCEEEE
Confidence 65 47888777 4888777777665443
No 180
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=1.1e-23 Score=184.31 Aligned_cols=159 Identities=16% Similarity=0.196 Sum_probs=116.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCC---ceEEEeeecCCC-------CCCCC-C-------CCCChhhhhh------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVR---RTMHIVNLDPAA-------ENFDY-P-------VAMDIRELIS------ 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~---G~i~i~~~d~~~-------~~~~~-~-------~~~~i~~~i~------ 58 (238)
-+++|+||||||||||+++|+|+++|++ |+|.++|.+... ..++| + ...++++++.
T Consensus 34 e~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~ 113 (282)
T PRK13640 34 SWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENR 113 (282)
T ss_pred CEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhC
Confidence 3689999999999999999999999987 899999987632 22333 1 1345666553
Q ss_pred ----------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 026486 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (238)
Q Consensus 59 ----------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~ 125 (238)
+.++++.+|+.+..... ...++++++ ++||++++. +|+++|+|||++ ||+.++..+. +++++
T Consensus 114 ~~~~~~~~~~~~~~l~~~~L~~~~~~~--~~~LS~G~~qrv~laral~~--~P~llllDEPt~gLD~~~~~~l~-~~l~~ 188 (282)
T PRK13640 114 AVPRPEMIKIVRDVLADVGMLDYIDSE--PANLSGGQKQRVAIAGILAV--EPKIIILDESTSMLDPAGKEQIL-KLIRK 188 (282)
T ss_pred CCCHHHHHHHHHHHHHHCCChhHhcCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEECCcccCCHHHHHHHH-HHHHH
Confidence 34567788887532222 134555543 899999999 999999999999 9999999999 89999
Q ss_pred HHhC-CCeEEEEEecccccccchhHHHhhhHHHHHHHHhhcCCeeee
Q 026486 126 LKSR-NFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNI 171 (238)
Q Consensus 126 l~~~-~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~~~p~~~v 171 (238)
++++ |.+++++ +|.+... .+++.+++...+.+....|.-.+
T Consensus 189 l~~~~g~tvli~----tH~~~~~-~~~d~i~~l~~G~i~~~g~~~~~ 230 (282)
T PRK13640 189 LKKKNNLTVISI----THDIDEA-NMADQVLVLDDGKLLAQGSPVEI 230 (282)
T ss_pred HHHhcCCEEEEE----ecCHHHH-HhCCEEEEEECCEEEEeCCHHHH
Confidence 8764 8888877 4777665 35676666555555544444333
No 181
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.89 E-value=1.6e-23 Score=178.41 Aligned_cols=157 Identities=16% Similarity=0.177 Sum_probs=120.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCCCC------CCC--CC------CCChhhhhh----------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAEN------FDY--PV------AMDIRELIS---------- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~------~~~--~~------~~~i~~~i~---------- 58 (238)
-+++++|||||||||++|.|+|++.|++|.|.+.|.+|..+. +++ .+ +..+.+.+.
T Consensus 51 ~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds~~v~~~Iy~Ipd 130 (325)
T COG4586 51 EIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIYEIPD 130 (325)
T ss_pred cEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhhhHHHHHHHHhCCH
Confidence 478999999999999999999999999999999999996521 111 11 111222222
Q ss_pred ------HHHHHHHcCCCCCCchhhhHHhhhhh--HHHHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-
Q 026486 59 ------LEDVMEELGLGPNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS- 128 (238)
Q Consensus 59 ------~~~~l~~~~l~~~~~~~~~~~~~~~~--~s~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~- 128 (238)
.+..-+.+++++. ....+..++-+ +++.||.+|.+ +|++++|||||- ||..++..+. +++++.++
T Consensus 131 ~~F~~r~~~l~eiLdl~~~--lk~~vr~LSlGqRmraeLaaaLLh--~p~VLfLDEpTvgLDV~aq~~ir-~Flke~n~~ 205 (325)
T COG4586 131 DEFAERLDFLTEILDLEGF--LKWPVRKLSLGQRMRAELAAALLH--PPKVLFLDEPTVGLDVNAQANIR-EFLKEYNEE 205 (325)
T ss_pred HHHHHHHHHHHHHhcchhh--hhhhhhhccchHHHHHHHHHHhcC--CCcEEEecCCccCcchhHHHHHH-HHHHHHHHh
Confidence 3344445566643 22234445544 44899999999 999999999998 9999999988 99999976
Q ss_pred CCCeEEEEEecccccccchhHHHhhhHHHHHHHHhhcCCe
Q 026486 129 RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPH 168 (238)
Q Consensus 129 ~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~~~p~ 168 (238)
++.||+.. +|.++|.+.+|.++++...|++..+.+.
T Consensus 206 ~~aTVllT----TH~~~di~~lc~rv~~I~~Gqlv~dg~l 241 (325)
T COG4586 206 RQATVLLT----THIFDDIATLCDRVLLIDQGQLVFDGTL 241 (325)
T ss_pred hCceEEEE----ecchhhHHHhhhheEEeeCCcEeecccH
Confidence 57788655 6999999999999999999998887544
No 182
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.89 E-value=8.7e-23 Score=172.48 Aligned_cols=144 Identities=16% Similarity=0.180 Sum_probs=103.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEe--ee--cCC-----------CCCCCC-CC------CCChhhhhh--
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV--NL--DPA-----------AENFDY-PV------AMDIRELIS-- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~--~~--d~~-----------~~~~~~-~~------~~~i~~~i~-- 58 (238)
-+++|+||||||||||+++|+|+++|++|+|.++ |. ++. ...++| ++ ..++++++.
T Consensus 35 e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~ 114 (224)
T TIGR02324 35 ECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEP 114 (224)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEecccccCCCccHHHHHHHH
Confidence 3689999999999999999999999999999997 32 321 122333 22 234444432
Q ss_pred --------------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHH
Q 026486 59 --------------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (238)
Q Consensus 59 --------------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ 121 (238)
+.++++.+|+.+..... ....++++.+ +.||++++. +|+++++||||+ ||+.+++.+. +
T Consensus 115 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~LS~G~~qrl~laral~~--~p~llllDEPt~~LD~~~~~~l~-~ 190 (224)
T TIGR02324 115 LLERGVPREAARARARELLARLNIPERLWHL-PPATFSGGEQQRVNIARGFIA--DYPILLLDEPTASLDAANRQVVV-E 190 (224)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCCchhhhhC-CcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-H
Confidence 45567778875421111 1234555543 899999999 999999999999 9999999999 8
Q ss_pred HHHHHHhCCCeEEEEEecccccccchhHHHhhh
Q 026486 122 FVDHLKSRNFNVCAVYLLDSQFITDVTKFISGC 154 (238)
Q Consensus 122 ll~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~ 154 (238)
++++++++|.+++++ +|.......+++.+
T Consensus 191 ~l~~~~~~g~tii~v----sH~~~~~~~~~d~i 219 (224)
T TIGR02324 191 LIAEAKARGAALIGI----FHDEEVRELVADRV 219 (224)
T ss_pred HHHHHHhcCCEEEEE----eCCHHHHHHhccee
Confidence 999987678888777 47766555555543
No 183
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.89 E-value=1.4e-23 Score=187.58 Aligned_cols=157 Identities=13% Similarity=0.142 Sum_probs=115.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCC---CceEEEeeecCCC-----------CCCCC-C--------CCCChhhhhh-
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETV---RRTMHIVNLDPAA-----------ENFDY-P--------VAMDIRELIS- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~---~G~i~i~~~d~~~-----------~~~~~-~--------~~~~i~~~i~- 58 (238)
-+++|+|+||||||||+++|+|+++|. +|+|.++|.++.. ..++| + +.+++.+++.
T Consensus 43 e~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~ 122 (330)
T PRK09473 43 ETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLME 122 (330)
T ss_pred CEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHH
Confidence 368999999999999999999999986 9999999987632 13333 2 2344444331
Q ss_pred ----------------HHHHHHHcCCCCCCc--hhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHH
Q 026486 59 ----------------LEDVMEELGLGPNGG--LIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVP 117 (238)
Q Consensus 59 ----------------~~~~l~~~~l~~~~~--~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~ 117 (238)
+.++++.+|+.+... ..+. ..++++++ ++||++++. +|+++|+||||+ ||+.++..
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p-~~LSgG~~QRv~IArAL~~--~P~llilDEPts~LD~~~~~~ 199 (330)
T PRK09473 123 VLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYP-HEFSGGMRQRVMIAMALLC--RPKLLIADEPTTALDVTVQAQ 199 (330)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCc-ccCCHHHHHHHHHHHHHHc--CCCEEEEeCCCccCCHHHHHH
Confidence 456788888864210 1122 34556554 999999999 999999999999 99999999
Q ss_pred HHHHHHHHHHhC-CCeEEEEEecccccccchhHHHhhhHHHHHHHHhhcCC
Q 026486 118 VLRNFVDHLKSR-NFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELP 167 (238)
Q Consensus 118 ~~~~ll~~l~~~-~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~~~p 167 (238)
++ +++++++++ |.++++| +|.+.....+++.++++..|.+....+
T Consensus 200 i~-~lL~~l~~~~g~til~i----THdl~~~~~~~Dri~vm~~G~ive~g~ 245 (330)
T PRK09473 200 IM-TLLNELKREFNTAIIMI----THDLGVVAGICDKVLVMYAGRTMEYGN 245 (330)
T ss_pred HH-HHHHHHHHHcCCEEEEE----ECCHHHHHHhCCEEEEEECCEEEEECC
Confidence 99 999999764 8899888 488877777777666555555544333
No 184
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=2.3e-23 Score=195.87 Aligned_cols=150 Identities=14% Similarity=0.227 Sum_probs=112.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCc-CCCceEEEeeecCCC--------CCCCC-CC---------CCChhhhh------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCE-TVRRTMHIVNLDPAA--------ENFDY-PV---------AMDIRELI------ 57 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~-~~~G~i~i~~~d~~~--------~~~~~-~~---------~~~i~~~i------ 57 (238)
-+++|+||||||||||+|+|+|+++ |++|+|.++|.++.. ..++| +| ..++.+++
T Consensus 289 e~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~ 368 (506)
T PRK13549 289 EILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALD 368 (506)
T ss_pred cEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhh
Confidence 3689999999999999999999998 599999999876521 12333 21 23443332
Q ss_pred ---------------hHHHHHHHcCCCC-CCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHH
Q 026486 58 ---------------SLEDVMEELGLGP-NGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (238)
Q Consensus 58 ---------------~~~~~l~~~~l~~-~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~ 118 (238)
.+.++++.+++.+ .... ....+++|++ ++||++++. +|+++|+||||+ ||+.++..+
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~~LSgG~kqrv~lA~al~~--~p~lllLDEPt~~LD~~~~~~l 444 (506)
T PRK13549 369 RFTGGSRIDDAAELKTILESIQRLKVKTASPEL--AIARLSGGNQQKAVLAKCLLL--NPKILILDEPTRGIDVGAKYEI 444 (506)
T ss_pred hhccCcccChHHHHHHHHHHHHhcCccCCCccc--ccccCCHHHHHHHHHHHHHhh--CCCEEEEcCCCCCcCHhHHHHH
Confidence 1456778888853 2221 1245666654 999999999 999999999999 999999999
Q ss_pred HHHHHHHHHhCCCeEEEEEecccccccchhHHHhhhHHHHHHH
Q 026486 119 LRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAM 161 (238)
Q Consensus 119 ~~~ll~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~ 161 (238)
+ +++++++++|.++|++ ||.+.....+++.+++...+.
T Consensus 445 ~-~~l~~l~~~g~tvi~~----sHd~~~~~~~~d~v~~l~~G~ 482 (506)
T PRK13549 445 Y-KLINQLVQQGVAIIVI----SSELPEVLGLSDRVLVMHEGK 482 (506)
T ss_pred H-HHHHHHHHCCCEEEEE----CCCHHHHHHhCCEEEEEECCE
Confidence 9 9999998778888877 588888888877665544443
No 185
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=1.3e-23 Score=180.99 Aligned_cols=146 Identities=17% Similarity=0.233 Sum_probs=103.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcC-----CCceEEEeeecCCC---------CCCCC-CC-----CCChhhhhh-----
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELIS----- 58 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~-----~~G~i~i~~~d~~~---------~~~~~-~~-----~~~i~~~i~----- 58 (238)
+++|+||||||||||+++|+|+++| ++|+|.++|.++.. ..++| +| ..++++++.
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~ 114 (254)
T PRK14273 35 ITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFLMSIYDNISYGPKI 114 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeeccccccCcHHHHHHHHHHh
Confidence 6899999999999999999999987 48999999876421 22344 22 245565543
Q ss_pred ------------HHHHHHHcCCCCC--CchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHH
Q 026486 59 ------------LEDVMEELGLGPN--GGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (238)
Q Consensus 59 ------------~~~~l~~~~l~~~--~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ 121 (238)
+.++++.+++.+. .........++++++ ++||++++. +|+++|+||||+ ||+.++..++ +
T Consensus 115 ~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l~-~ 191 (254)
T PRK14273 115 HGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAI--EPNVILMDEPTSALDPISTGKIE-E 191 (254)
T ss_pred cCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCCcccCHHHHHHHH-H
Confidence 2334555555311 001111233555543 899999999 999999999999 9999999999 9
Q ss_pred HHHHHHhCCCeEEEEEecccccccchhHHHhhhHHH
Q 026486 122 FVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMAS 157 (238)
Q Consensus 122 ll~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~ 157 (238)
+++++++ +.++|++ +|.......+++.+++.
T Consensus 192 ~l~~~~~-~~tvii~----sH~~~~~~~~~d~i~~l 222 (254)
T PRK14273 192 LIINLKE-SYTIIIV----THNMQQAGRISDRTAFF 222 (254)
T ss_pred HHHHHhc-CCEEEEE----eCCHHHHHHhCCEEEEE
Confidence 9999854 6788777 48777666666655443
No 186
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.89 E-value=2.6e-23 Score=195.20 Aligned_cols=145 Identities=16% Similarity=0.215 Sum_probs=110.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC--------CCCCC-CC---------CCChhhhh-------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-PV---------AMDIRELI------- 57 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~--------~~~~~-~~---------~~~i~~~i------- 57 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| +| ..++.+++
T Consensus 280 e~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~ 359 (501)
T PRK11288 280 EIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRH 359 (501)
T ss_pred cEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchh
Confidence 4689999999999999999999999999999999876421 12223 11 23444332
Q ss_pred ---------------hHHHHHHHcCCC-CCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHH
Q 026486 58 ---------------SLEDVMEELGLG-PNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (238)
Q Consensus 58 ---------------~~~~~l~~~~l~-~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~ 118 (238)
.+.++++.+++. ...... ...++++++ +.||++++. +|+++||||||+ ||+.+++.+
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~LSgGq~qrl~la~al~~--~p~lllLDEPt~~LD~~~~~~l 435 (501)
T PRK11288 360 HLRAGCLINNRWEAENADRFIRSLNIKTPSREQL--IMNLSGGNQQKAILGRWLSE--DMKVILLDEPTRGIDVGAKHEI 435 (501)
T ss_pred hcccccccChHHHHHHHHHHHHhcCcccCCccCc--cccCCHHHHHHHHHHHHHcc--CCCEEEEcCCCCCCCHhHHHHH
Confidence 145677888884 222111 235666654 899999999 999999999999 999999999
Q ss_pred HHHHHHHHHhCCCeEEEEEecccccccchhHHHhhhHH
Q 026486 119 LRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMA 156 (238)
Q Consensus 119 ~~~ll~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~ 156 (238)
+ +++++++++|.++|++ +|++.....+++.+++
T Consensus 436 ~-~~l~~l~~~g~tviiv----sHd~~~~~~~~d~i~~ 468 (501)
T PRK11288 436 Y-NVIYELAAQGVAVLFV----SSDLPEVLGVADRIVV 468 (501)
T ss_pred H-HHHHHHHhCCCEEEEE----CCCHHHHHhhCCEEEE
Confidence 9 9999998788898888 5888888888775544
No 187
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.89 E-value=5e-23 Score=170.76 Aligned_cols=132 Identities=17% Similarity=0.256 Sum_probs=98.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCC--cCCCceEEEeeecCCC----CCCCC-CC------CCChhhhhhHHHHHHHcCCC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHC--ETVRRTMHIVNLDPAA----ENFDY-PV------AMDIRELISLEDVMEELGLG 69 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l--~~~~G~i~i~~~d~~~----~~~~~-~~------~~~i~~~i~~~~~l~~~~l~ 69 (238)
-+++|+||||||||||+++|+|++ +|++|+|.++|.++.. ..+.| ++ ..++++++.....+ .
T Consensus 36 e~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~---~-- 110 (194)
T cd03213 36 ELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKL---R-- 110 (194)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHh---c--
Confidence 368999999999999999999999 9999999999987632 22333 22 34555554322111 0
Q ss_pred CCCchhhhHHhhhhhH--HHHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEEeccccccc-
Q 026486 70 PNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFIT- 145 (238)
Q Consensus 70 ~~~~~~~~~~~~~~~~--s~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~tvi~v~l~d~~~~~- 145 (238)
.+++++ ++.||++++. +|+++++|||++ ||+.++..+. ++++++.+++.+++++ +|...
T Consensus 111 ----------~LS~G~~qrv~laral~~--~p~illlDEP~~~LD~~~~~~l~-~~l~~~~~~~~tiii~----sh~~~~ 173 (194)
T cd03213 111 ----------GLSGGERKRVSIALELVS--NPSLLFLDEPTSGLDSSSALQVM-SLLRRLADTGRTIICS----IHQPSS 173 (194)
T ss_pred ----------cCCHHHHHHHHHHHHHHc--CCCEEEEeCCCcCCCHHHHHHHH-HHHHHHHhCCCEEEEE----ecCchH
Confidence 234443 3899999999 999999999999 9999999999 9999987668888777 47765
Q ss_pred chhHHHhhhHH
Q 026486 146 DVTKFISGCMA 156 (238)
Q Consensus 146 d~~~~~~~~l~ 156 (238)
+...+++.+++
T Consensus 174 ~~~~~~d~v~~ 184 (194)
T cd03213 174 EIFELFDKLLL 184 (194)
T ss_pred HHHHhcCEEEE
Confidence 45556665443
No 188
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=2.3e-23 Score=186.11 Aligned_cols=158 Identities=15% Similarity=0.198 Sum_probs=116.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCc----CCCceEEEeeecCCC-----------CCCCC-CC--------CCChhhhh-
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCE----TVRRTMHIVNLDPAA-----------ENFDY-PV--------AMDIRELI- 57 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~----~~~G~i~i~~~d~~~-----------~~~~~-~~--------~~~i~~~i- 57 (238)
-+++|+|+||||||||+++|+|+++ +++|+|.++|.++.. ..++| +| ..++.+++
T Consensus 34 e~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~ 113 (330)
T PRK15093 34 EIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLM 113 (330)
T ss_pred CEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHH
Confidence 3689999999999999999999996 589999999987532 12333 22 22333222
Q ss_pred ---------------------hHHHHHHHcCCCCCCc--hhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-cc
Q 026486 58 ---------------------SLEDVMEELGLGPNGG--LIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IE 111 (238)
Q Consensus 58 ---------------------~~~~~l~~~~l~~~~~--~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD 111 (238)
.+.++++.+||.+... ..+. ..++++++ ++||++|+. +|+++|+||||+ ||
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p-~~LSgG~~QRv~iArAL~~--~P~llilDEPts~LD 190 (330)
T PRK15093 114 QNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFP-YELTEGECQKVMIAIALAN--QPRLLIADEPTNAME 190 (330)
T ss_pred HHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCc-hhCCHHHHHHHHHHHHHHC--CCCEEEEeCCCCcCC
Confidence 1456788888875311 1112 34556554 999999999 999999999999 99
Q ss_pred HHhHHHHHHHHHHHHHh-CCCeEEEEEecccccccchhHHHhhhHHHHHHHHhhcCCe
Q 026486 112 LFTHVPVLRNFVDHLKS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPH 168 (238)
Q Consensus 112 ~~~~~~~~~~ll~~l~~-~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~~~p~ 168 (238)
+.++.+++ ++++++++ .|.++|+| +|.+.....+++.++++..+.+....+.
T Consensus 191 ~~~~~~i~-~lL~~l~~~~g~tii~i----tHdl~~v~~~~dri~vm~~G~ive~g~~ 243 (330)
T PRK15093 191 PTTQAQIF-RLLTRLNQNNNTTILLI----SHDLQMLSQWADKINVLYCGQTVETAPS 243 (330)
T ss_pred HHHHHHHH-HHHHHHHHhcCCEEEEE----ECCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 99999999 99999976 48899888 4888888888887766666665444443
No 189
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.89 E-value=3.2e-23 Score=194.63 Aligned_cols=149 Identities=15% Similarity=0.234 Sum_probs=112.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC--------CCCCC-CC---------CCChhhhhh------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-PV---------AMDIRELIS------ 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~--------~~~~~-~~---------~~~i~~~i~------ 58 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| +| ..++.+++.
T Consensus 279 e~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~ 358 (501)
T PRK10762 279 EILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRY 358 (501)
T ss_pred cEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhh
Confidence 4689999999999999999999999999999999876521 22444 22 234444331
Q ss_pred ----------------HHHHHHHcCCC-CCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHH
Q 026486 59 ----------------LEDVMEELGLG-PNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (238)
Q Consensus 59 ----------------~~~~l~~~~l~-~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~ 118 (238)
++++++.+++. +..... ...+++|++ +.||++++. +|+++|+||||+ ||+.++..+
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~LSgGekqrv~lA~al~~--~p~lllLDEPt~~LD~~~~~~l 434 (501)
T PRK10762 359 FSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQA--IGLLSGGNQQKVAIARGLMT--RPKVLILDEPTRGVDVGAKKEI 434 (501)
T ss_pred hcccccccCHHHHHHHHHHHHHhcCCCCCCccCc--hhhCCHHHHHHHHHHHHHhh--CCCEEEEcCCCCCCCHhHHHHH
Confidence 45677888884 332221 245666654 899999999 999999999999 999999999
Q ss_pred HHHHHHHHHhCCCeEEEEEecccccccchhHHHhhhHHHHHH
Q 026486 119 LRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSA 160 (238)
Q Consensus 119 ~~~ll~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~ 160 (238)
. +++++++++|.+++++ +|.+.....+++.+++...+
T Consensus 435 ~-~~l~~~~~~g~tviiv----tHd~~~~~~~~d~v~~l~~G 471 (501)
T PRK10762 435 Y-QLINQFKAEGLSIILV----SSEMPEVLGMSDRILVMHEG 471 (501)
T ss_pred H-HHHHHHHHCCCEEEEE----cCCHHHHHhhCCEEEEEECC
Confidence 9 9999997778888877 58887777777755544333
No 190
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.89 E-value=1.9e-23 Score=200.85 Aligned_cols=155 Identities=15% Similarity=0.169 Sum_probs=116.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC----------CCCCC-CC--------CCChhhhhh-----
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-PV--------AMDIRELIS----- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~----------~~~~~-~~--------~~~i~~~i~----- 58 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| +| ..++.+++.
T Consensus 351 e~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~ 430 (623)
T PRK10261 351 ETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRV 430 (623)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHH
Confidence 3689999999999999999999999999999999976521 12333 22 345554431
Q ss_pred ------------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHH
Q 026486 59 ------------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV 123 (238)
Q Consensus 59 ------------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll 123 (238)
+.++++.+|+.+.....+ ...++++++ ++||++++. +|++||+||||+ ||+.++..++ +++
T Consensus 431 ~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~-~~~LSgGqrQRv~iAraL~~--~p~llllDEPts~LD~~~~~~i~-~ll 506 (623)
T PRK10261 431 HGLLPGKAAAARVAWLLERVGLLPEHAWRY-PHEFSGGQRQRICIARALAL--NPKVIIADEAVSALDVSIRGQII-NLL 506 (623)
T ss_pred cCCCCHHHHHHHHHHHHHHcCCCHHHhhCC-cccCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHH
Confidence 456788888853211112 235666654 999999999 999999999999 9999999999 999
Q ss_pred HHHHhC-CCeEEEEEecccccccchhHHHhhhHHHHHHHHhhc
Q 026486 124 DHLKSR-NFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLE 165 (238)
Q Consensus 124 ~~l~~~-~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~~ 165 (238)
++++++ |.++|+| ||.+.....+++.++++..+.+...
T Consensus 507 ~~l~~~~g~tvi~i----sHdl~~v~~~~dri~vl~~G~iv~~ 545 (623)
T PRK10261 507 LDLQRDFGIAYLFI----SHDMAVVERISHRVAVMYLGQIVEI 545 (623)
T ss_pred HHHHHhcCCEEEEE----eCCHHHHHHhCCEEEEEECCEEEEe
Confidence 999764 8899888 5888888888887766555554433
No 191
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.89 E-value=8.7e-23 Score=185.72 Aligned_cols=151 Identities=13% Similarity=0.188 Sum_probs=121.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC---------------CCCCCCCCCChhhhhh---------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------------ENFDYPVAMDIRELIS--------- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~---------------~~~~~~~~~~i~~~i~--------- 58 (238)
-+.+++|.||+|||||+++|.|+++|++|+|.++|+...- +++...+.+|+.||+-
T Consensus 31 eIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~ 110 (501)
T COG3845 31 EIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGG 110 (501)
T ss_pred cEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcEEeeccccccccchhhhhhhcCcccccc
Confidence 4789999999999999999999999999999999986521 4455566777777763
Q ss_pred ----------HHHHHHHcCCCCCCc-hhhhHHhhhhhHHHHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 026486 59 ----------LEDVMEELGLGPNGG-LIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (238)
Q Consensus 59 ----------~~~~l~~~~l~~~~~-~~~~~~~~~~~~s~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l 126 (238)
++++++++|+.-+.. .+..+ ....++++.|.++|.. +|++|||||||+ |-|....+++ .+++++
T Consensus 111 ~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dL-sVG~qQRVEIlKaLyr--~a~iLILDEPTaVLTP~E~~~lf-~~l~~l 186 (501)
T COG3845 111 LIDRRQARARIKELSERYGLPVDPDAKVADL-SVGEQQRVEILKALYR--GARLLILDEPTAVLTPQEADELF-EILRRL 186 (501)
T ss_pred ccCHHHHHHHHHHHHHHhCCCCCccceeecC-CcchhHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHH
Confidence 788899999864322 22111 1223345999999999 999999999999 9999999999 999999
Q ss_pred HhCCCeEEEEEecccccccchhHHHhhhHHHHHHH
Q 026486 127 KSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAM 161 (238)
Q Consensus 127 ~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~ 161 (238)
+++|++||+| ||.+.+.-.+++++-+...|.
T Consensus 187 ~~~G~tIi~I----THKL~Ev~~iaDrvTVLR~Gk 217 (501)
T COG3845 187 AAEGKTIIFI----THKLKEVMAIADRVTVLRRGK 217 (501)
T ss_pred HHCCCEEEEE----eccHHHHHHhhCeeEEEeCCe
Confidence 9999999999 599999998888665544443
No 192
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.89 E-value=3.4e-23 Score=194.87 Aligned_cols=149 Identities=13% Similarity=0.217 Sum_probs=112.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC--------CCCCC-CC---------CCChhhhh-------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-PV---------AMDIRELI------- 57 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~--------~~~~~-~~---------~~~i~~~i------- 57 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| +| ..++.+++
T Consensus 290 e~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~ 369 (510)
T PRK15439 290 EILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNR 369 (510)
T ss_pred cEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhh
Confidence 4689999999999999999999999999999999876421 12344 22 13443332
Q ss_pred ------------hHHHHHHHcCCC-CCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHH
Q 026486 58 ------------SLEDVMEELGLG-PNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (238)
Q Consensus 58 ------------~~~~~l~~~~l~-~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ 121 (238)
.++++++.+|+. ...... ...+++|++ ++||++++. +|++|||||||+ ||+.++..+. +
T Consensus 370 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~LSgG~kqrl~la~al~~--~p~lLlLDEPt~gLD~~~~~~l~-~ 444 (510)
T PRK15439 370 RGFWIKPARENAVLERYRRALNIKFNHAEQA--ARTLSGGNQQKVLIAKCLEA--SPQLLIVDEPTRGVDVSARNDIY-Q 444 (510)
T ss_pred hccccChHHHHHHHHHHHHHcCCCCCCccCc--cccCCcHHHHHHHHHHHHhh--CCCEEEECCCCcCcChhHHHHHH-H
Confidence 145678888886 332222 245666654 899999999 999999999999 9999999999 9
Q ss_pred HHHHHHhCCCeEEEEEecccccccchhHHHhhhHHHHHH
Q 026486 122 FVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSA 160 (238)
Q Consensus 122 ll~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~ 160 (238)
++++++++|.++|++ +|.+.....+++.+++...+
T Consensus 445 ~l~~l~~~g~tiIiv----sHd~~~i~~~~d~i~~l~~G 479 (510)
T PRK15439 445 LIRSIAAQNVAVLFI----SSDLEEIEQMADRVLVMHQG 479 (510)
T ss_pred HHHHHHhCCCEEEEE----CCCHHHHHHhCCEEEEEECC
Confidence 999997778888877 58888777877765544333
No 193
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.89 E-value=4e-23 Score=179.49 Aligned_cols=152 Identities=16% Similarity=0.179 Sum_probs=111.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC----------CCCCC---------CCCCChhhhh------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY---------PVAMDIRELI------ 57 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~----------~~~~~---------~~~~~i~~~i------ 57 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| .+..++.+++
T Consensus 39 e~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~ 118 (268)
T PRK10419 39 ETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRH 118 (268)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHh
Confidence 3689999999999999999999999999999999976531 12222 2233444433
Q ss_pred -----------hHHHHHHHcCCCC-CCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHH
Q 026486 58 -----------SLEDVMEELGLGP-NGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (238)
Q Consensus 58 -----------~~~~~l~~~~l~~-~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~l 122 (238)
.++++++.+|+.+ ..... ...++++++ +.||++++. +|+++|+|||++ ||+.++..+. ++
T Consensus 119 ~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~--~~~LS~Ge~qrl~laral~~--~p~lllLDEPt~~LD~~~~~~~~-~~ 193 (268)
T PRK10419 119 LLSLDKAERLARASEMLRAVDLDDSVLDKR--PPQLSGGQLQRVCLARALAV--EPKLLILDEAVSNLDLVLQAGVI-RL 193 (268)
T ss_pred hccCCHHHHHHHHHHHHHHcCCChhHhhCC--CccCChHHHHHHHHHHHHhc--CCCEEEEeCCCcccCHHHHHHHH-HH
Confidence 1556788888863 21111 123555543 899999999 999999999999 9999999999 99
Q ss_pred HHHHHhC-CCeEEEEEecccccccchhHHHhhhHHHHHHHHh
Q 026486 123 VDHLKSR-NFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQ 163 (238)
Q Consensus 123 l~~l~~~-~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~ 163 (238)
+++++++ +.++|++ +|...+...+++.++....+.+.
T Consensus 194 l~~~~~~~~~tiiiv----sH~~~~i~~~~d~i~~l~~G~i~ 231 (268)
T PRK10419 194 LKKLQQQFGTACLFI----THDLRLVERFCQRVMVMDNGQIV 231 (268)
T ss_pred HHHHHHHcCcEEEEE----ECCHHHHHHhCCEEEEEECCEEe
Confidence 9988754 7888877 48887777777766555444443
No 194
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.89 E-value=3.3e-23 Score=180.50 Aligned_cols=151 Identities=19% Similarity=0.172 Sum_probs=109.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCC--------CceEEEeeecCCC-------CCCCC-C------CCCChhhhhh--
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETV--------RRTMHIVNLDPAA-------ENFDY-P------VAMDIRELIS-- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~--------~G~i~i~~~d~~~-------~~~~~-~------~~~~i~~~i~-- 58 (238)
-+++|+||||||||||+++|+|+++|+ +|+|.++|.++.. ..+.| + ...++++++.
T Consensus 28 e~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~ 107 (272)
T PRK13547 28 RVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLG 107 (272)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhc
Confidence 368999999999999999999999998 8999999976531 11222 1 1234555442
Q ss_pred ------------------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHh---------ccCCCCEEEEeCCCc
Q 026486 59 ------------------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELD---------NYLDDDYLVFDCPGQ 109 (238)
Q Consensus 59 ------------------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~---------~~~~p~~lilDEPt~ 109 (238)
+.++++.+++....... ...++++++ ++||++++ . +|+++|+||||+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrv~laral~~~~~~~~~~~--~p~lllLDEPt~ 183 (272)
T PRK13547 108 RYPHARRAGALTHRDGEIAWQALALAGATALVGRD--VTTLSGGELARVQFARVLAQLWPPHDAAQ--PPRYLLLDEPTA 183 (272)
T ss_pred ccccccccccCCHHHHHHHHHHHHHcCcHhhhcCC--cccCCHHHHHHHHHHHHHhccccccccCC--CCCEEEEcCccc
Confidence 34566777776432211 234555543 89999999 6 899999999999
Q ss_pred -ccHHhHHHHHHHHHHHHHhC-CCeEEEEEecccccccchhHHHhhhHHHHHHHH
Q 026486 110 -IELFTHVPVLRNFVDHLKSR-NFNVCAVYLLDSQFITDVTKFISGCMASLSAMV 162 (238)
Q Consensus 110 -LD~~~~~~~~~~ll~~l~~~-~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~ 162 (238)
||+.++..+. ++++++.++ |.+++++ +|...+...+++.+++...+.+
T Consensus 184 ~LD~~~~~~l~-~~l~~~~~~~~~tviii----sH~~~~~~~~~d~i~~l~~G~i 233 (272)
T PRK13547 184 ALDLAHQHRLL-DTVRRLARDWNLGVLAI----VHDPNLAARHADRIAMLADGAI 233 (272)
T ss_pred cCCHHHHHHHH-HHHHHHHHhcCCEEEEE----ECCHHHHHHhCCEEEEEECCeE
Confidence 9999999999 999998765 8888877 4888777777775555444433
No 195
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.89 E-value=2e-23 Score=194.36 Aligned_cols=155 Identities=17% Similarity=0.086 Sum_probs=115.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCC-CCCCCCCCCCChhhhhh----------------HHHHHHH
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-AENFDYPVAMDIRELIS----------------LEDVMEE 65 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~-~~~~~~~~~~~i~~~i~----------------~~~~l~~ 65 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.+.. .....+.+..++++++. +.++++.
T Consensus 51 EivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~ 130 (549)
T PRK13545 51 EIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEF 130 (549)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeeeEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHH
Confidence 368999999999999999999999999999999886521 11122344456666542 3356777
Q ss_pred cCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEEecccc
Q 026486 66 LGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQ 142 (238)
Q Consensus 66 ~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~tvi~v~l~d~~ 142 (238)
+++.+..... ...+++|++ ++||++++. +|+++|+||||+ ||+.++..++ +++++++++|.+++++ +|
T Consensus 131 lgL~~~ld~~--~~~LSGGQrQRVaLArAL~~--~P~LLLLDEPTsgLD~~sr~~Ll-elL~el~~~G~TIIIV----SH 201 (549)
T PRK13545 131 ADIGKFIYQP--VKTYSSGMKSRLGFAISVHI--NPDILVIDEALSVGDQTFTKKCL-DKMNEFKEQGKTIFFI----SH 201 (549)
T ss_pred cCChhHhhCC--cccCCHHHHHHHHHHHHHHh--CCCEEEEECCcccCCHHHHHHHH-HHHHHHHhCCCEEEEE----EC
Confidence 8886532221 234555554 899999999 999999999999 9999999999 8898887678888877 48
Q ss_pred cccchhHHHhhhHHHHHHHHhhcC
Q 026486 143 FITDVTKFISGCMASLSAMVQLEL 166 (238)
Q Consensus 143 ~~~d~~~~~~~~l~~~~~~~~~~~ 166 (238)
.......+++.+++...+.+....
T Consensus 202 dl~~i~~l~DrIivL~~GkIv~~G 225 (549)
T PRK13545 202 SLSQVKSFCTKALWLHYGQVKEYG 225 (549)
T ss_pred CHHHHHHhCCEEEEEECCEEEEEC
Confidence 888777888877666555544333
No 196
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.89 E-value=8.5e-24 Score=180.67 Aligned_cols=166 Identities=15% Similarity=0.212 Sum_probs=138.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecC-----------CCCCCCC-------CCCCChhhhhh-------
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP-----------AAENFDY-------PVAMDIRELIS------- 58 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~-----------~~~~~~~-------~~~~~i~~~i~------- 58 (238)
++++.|++|||||||+|+|+|+.+|+.|.|.++|.-. ..+.++| +|.++++.|+.
T Consensus 26 vTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrgNL~YG~~~~~ 105 (352)
T COG4148 26 ITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRYGMWKSM 105 (352)
T ss_pred eEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEecchhhhhcccc
Confidence 6899999999999999999999999999999998532 2345666 34566766654
Q ss_pred ---HHHHHHHcCCCCCCchhhhHHhhhhh--HHHHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC-CC
Q 026486 59 ---LEDVMEELGLGPNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NF 131 (238)
Q Consensus 59 ---~~~~l~~~~l~~~~~~~~~~~~~~~~--~s~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~~ 131 (238)
.+++...+|+++....... .++++ ++++|+|||.. .|++|++|||.+ ||...+++++ -++++|.++ +.
T Consensus 106 ~~~fd~iv~lLGI~hLL~R~P~--~LSGGEkQRVAIGRALLt--~P~LLLmDEPLaSLD~~RK~Eil-pylERL~~e~~I 180 (352)
T COG4148 106 RAQFDQLVALLGIEHLLDRYPG--TLSGGEKQRVAIGRALLT--APELLLMDEPLASLDLPRKREIL-PYLERLRDEINI 180 (352)
T ss_pred hHhHHHHHHHhCcHHHHhhCCC--ccCcchhhHHHHHHHHhc--CCCeeeecCchhhcccchhhHHH-HHHHHHHHhcCC
Confidence 6788889999986433221 23333 45999999999 999999999998 9999999999 999999864 88
Q ss_pred eEEEEEecccccccchhHHHhhhHHHHHHHHhhcCCeeeeecccccc
Q 026486 132 NVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV 178 (238)
Q Consensus 132 tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~~~p~~~vlsk~dll 178 (238)
.|+.| ||.+.+....++.++++..|.++...|.-.|++..|+.
T Consensus 181 PIlYV----SHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~~~~~ 223 (352)
T COG4148 181 PILYV----SHSLDEVLRLADRVVVLENGKVKASGPLEEVWGSPDFP 223 (352)
T ss_pred CEEEE----ecCHHHHHhhhheEEEecCCeEEecCcHHHHhcCcccC
Confidence 88888 59999999999999999999999999999999888875
No 197
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.89 E-value=5.9e-23 Score=192.83 Aligned_cols=151 Identities=15% Similarity=0.161 Sum_probs=113.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC--------CCCCC-C------CCCChhhhhh---------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-P------VAMDIRELIS--------- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~--------~~~~~-~------~~~~i~~~i~--------- 58 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| + +..++.+++.
T Consensus 31 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~ 110 (501)
T PRK11288 31 QVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGG 110 (501)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhcccccccC
Confidence 3689999999999999999999999999999999876531 22333 2 2234444432
Q ss_pred ----------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 026486 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (238)
Q Consensus 59 ----------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~ 125 (238)
+.++++.+|+.+.... ....++++++ ++||++++. +|+++|+||||+ ||+.++..+. +++++
T Consensus 111 ~~~~~~~~~~~~~~l~~~~l~~~~~~--~~~~LSgGq~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~ 185 (501)
T PRK11288 111 IVNRRLLNYEAREQLEHLGVDIDPDT--PLKYLSIGQRQMVEIAKALAR--NARVIAFDEPTSSLSAREIEQLF-RVIRE 185 (501)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCcCC--chhhCCHHHHHHHHHHHHHHh--CCCEEEEcCCCCCCCHHHHHHHH-HHHHH
Confidence 4567888888643222 2245666654 899999999 999999999999 9999999999 89999
Q ss_pred HHhCCCeEEEEEecccccccchhHHHhhhHHHHHHHH
Q 026486 126 LKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMV 162 (238)
Q Consensus 126 l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~ 162 (238)
++++|.++|++ +|.......+++.+++...+.+
T Consensus 186 ~~~~g~tiiii----tHd~~~~~~~~d~i~~l~~G~i 218 (501)
T PRK11288 186 LRAEGRVILYV----SHRMEEIFALCDAITVFKDGRY 218 (501)
T ss_pred HHhCCCEEEEE----eCCHHHHHHhCCEEEEEECCEE
Confidence 87778888888 4777777777776655544443
No 198
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.89 E-value=1.8e-22 Score=170.35 Aligned_cols=142 Identities=15% Similarity=0.222 Sum_probs=104.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC----------CCCCC-C------CCCChhhhhh-------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-P------VAMDIRELIS------- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~----------~~~~~-~------~~~~i~~~i~------- 58 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| + +..++.+++.
T Consensus 32 ~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~ 111 (220)
T TIGR02982 32 EIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQP 111 (220)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhcc
Confidence 3789999999999999999999999999999999876521 12333 2 2234443331
Q ss_pred ----------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 026486 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (238)
Q Consensus 59 ----------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~ 125 (238)
+.++++.+|+++..... ...++++++ ++||++++. +|+++|+|||++ ||+.++..+. +++++
T Consensus 112 ~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~lS~G~~qrv~laral~~--~p~illlDEP~~~LD~~~~~~l~-~~l~~ 186 (220)
T TIGR02982 112 NLSYQEARERARAMLEAVGLGDHLDYY--PHNLSGGQKQRVAIARALVH--RPKLVLADEPTAALDSKSGRDVV-ELMQK 186 (220)
T ss_pred CCCHHHHHHHHHHHHHHcCChhhhhcC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCcCCHHHHHHHH-HHHHH
Confidence 56778888886532222 234555543 899999999 999999999999 9999999999 88988
Q ss_pred HHh-CCCeEEEEEecccccccchhHHHhhh
Q 026486 126 LKS-RNFNVCAVYLLDSQFITDVTKFISGC 154 (238)
Q Consensus 126 l~~-~~~tvi~v~l~d~~~~~d~~~~~~~~ 154 (238)
+.+ .+.+++++ +|... ...+++.+
T Consensus 187 ~~~~~~~tii~~----sh~~~-~~~~~d~v 211 (220)
T TIGR02982 187 LAREQGCTILIV----THDNR-ILDVADRI 211 (220)
T ss_pred HHHHcCCEEEEE----eCCHH-HHhhCCEE
Confidence 875 57888877 46654 33455533
No 199
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=1.9e-23 Score=177.59 Aligned_cols=141 Identities=18% Similarity=0.208 Sum_probs=97.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-------CCCCC-CC-----CCChhhhhh------------
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS------------ 58 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~-----~~~i~~~i~------------ 58 (238)
+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| ++ ..++++++.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~ 109 (234)
T cd03251 30 TVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVE 109 (234)
T ss_pred EEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeeccccHHHHhhccCCCCCHHHHH
Confidence 689999999999999999999999999999999876421 12333 22 135555543
Q ss_pred -------HHHHHHHc--CCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 026486 59 -------LEDVMEEL--GLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (238)
Q Consensus 59 -------~~~~l~~~--~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l 126 (238)
+.++++.+ ++...... ....++++++ +.||++++. +|+++|+|||++ ||+.++..+. ++++++
T Consensus 110 ~~~~~~~~~~~~~~l~~~l~~~~~~--~~~~LS~G~~qrv~la~al~~--~p~lllLDEP~~~LD~~~~~~l~-~~l~~~ 184 (234)
T cd03251 110 EAARAANAHEFIMELPEGYDTVIGE--RGVKLSGGQRQRIAIARALLK--DPPILILDEATSALDTESERLVQ-AALERL 184 (234)
T ss_pred HHHHHcCcHHHHHhcccCcceeecc--CCCcCCHHHHHHHHHHHHHhc--CCCEEEEeCccccCCHHHHHHHH-HHHHHh
Confidence 11222222 22211111 1123444443 899999999 999999999999 9999999998 889888
Q ss_pred HhCCCeEEEEEecccccccchhHHHhhhH
Q 026486 127 KSRNFNVCAVYLLDSQFITDVTKFISGCM 155 (238)
Q Consensus 127 ~~~~~tvi~v~l~d~~~~~d~~~~~~~~l 155 (238)
.+ +.++|++ +|...+... ++.++
T Consensus 185 ~~-~~tii~~----sh~~~~~~~-~d~v~ 207 (234)
T cd03251 185 MK-NRTTFVI----AHRLSTIEN-ADRIV 207 (234)
T ss_pred cC-CCEEEEE----ecCHHHHhh-CCEEE
Confidence 64 7788777 476665433 55443
No 200
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.89 E-value=1.6e-22 Score=171.38 Aligned_cols=137 Identities=17% Similarity=0.144 Sum_probs=100.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-------CCCCC-CC-----CCChhhhhh-----------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~-----~~~i~~~i~----------- 58 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| ++ ..++++++.
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~ 113 (225)
T PRK10247 34 EFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPD 113 (225)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEEEecccccccccHHHHHHhHHhhcCCChH
Confidence 3689999999999999999999999999999999876531 22333 21 125666542
Q ss_pred ---HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CCC
Q 026486 59 ---LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNF 131 (238)
Q Consensus 59 ---~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~~ 131 (238)
+.++++.+++....... ....++++.+ ++||++++. +|+++|+||||+ ||+.++..+. ++++++.+ .|.
T Consensus 114 ~~~~~~~l~~~~l~~~~~~~-~~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~~ 189 (225)
T PRK10247 114 PAIFLDDLERFALPDTILTK-NIAELSGGEKQRISLIRNLQF--MPKVLLLDEITSALDESNKHNVN-EIIHRYVREQNI 189 (225)
T ss_pred HHHHHHHHHHcCCChHHhcC-CcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCC
Confidence 35677788885211001 1233555443 899999999 999999999999 9999999998 88998865 478
Q ss_pred eEEEEEecccccccch
Q 026486 132 NVCAVYLLDSQFITDV 147 (238)
Q Consensus 132 tvi~v~l~d~~~~~d~ 147 (238)
++++++ |.....
T Consensus 190 tvii~s----h~~~~~ 201 (225)
T PRK10247 190 AVLWVT----HDKDEI 201 (225)
T ss_pred EEEEEE----CChHHH
Confidence 887773 665443
No 201
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=4.7e-23 Score=177.23 Aligned_cols=151 Identities=16% Similarity=0.160 Sum_probs=106.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcC-----CCceEEEeeecCC--C-------CCCCC-CC------CCChhhhhh---
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPA--A-------ENFDY-PV------AMDIRELIS--- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~-----~~G~i~i~~~d~~--~-------~~~~~-~~------~~~i~~~i~--- 58 (238)
-+++|+||||||||||+++|+|+++| ++|+|.++|.++. . ..++| ++ ..++.+++.
T Consensus 31 e~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~ 110 (253)
T PRK14267 31 GVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGV 110 (253)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCccCCCCcHHHHHHHHH
Confidence 36899999999999999999999987 4999999987653 1 22344 22 345555543
Q ss_pred ---------------HHHHHHHcCCCCCC--chhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHH
Q 026486 59 ---------------LEDVMEELGLGPNG--GLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (238)
Q Consensus 59 ---------------~~~~l~~~~l~~~~--~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~ 118 (238)
+.++++.+++.+.. ........++++++ ++||++++. +|+++|+|||++ ||+.++..+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEP~~~LD~~~~~~l 188 (253)
T PRK14267 111 KLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAM--KPKILLMDEPTANIDPVGTAKI 188 (253)
T ss_pred HhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHHHHH
Confidence 23455666664210 01111234555543 899999999 999999999999 999999999
Q ss_pred HHHHHHHHHhCCCeEEEEEecccccccchhHHHhhhHHHHHHH
Q 026486 119 LRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAM 161 (238)
Q Consensus 119 ~~~ll~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~ 161 (238)
. ++++++.+ +.++|++ +|...+...+++.+++...+.
T Consensus 189 ~-~~l~~~~~-~~tiii~----sH~~~~~~~~~d~i~~l~~G~ 225 (253)
T PRK14267 189 E-ELLFELKK-EYTIVLV----THSPAQAARVSDYVAFLYLGK 225 (253)
T ss_pred H-HHHHHHhh-CCEEEEE----ECCHHHHHhhCCEEEEEECCE
Confidence 9 88888865 6788777 487776666776554443333
No 202
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.89 E-value=7.6e-23 Score=176.26 Aligned_cols=146 Identities=18% Similarity=0.228 Sum_probs=106.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeec-CC--CCCCCCCCC--CChhhhh---------hHHHHHHHcCC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-PA--AENFDYPVA--MDIRELI---------SLEDVMEELGL 68 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d-~~--~~~~~~~~~--~~i~~~i---------~~~~~l~~~~l 68 (238)
-+++|+||||||||||+++|+|+++|++|+|.+.+.. .+ .+...+.+. .++.+++ .+.++++.+++
T Consensus 31 e~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl 110 (251)
T PRK09544 31 KILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQA 110 (251)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccccccccChhHHHHHhccccccHHHHHHHHHHcCC
Confidence 3689999999999999999999999999999987631 00 011111111 2344432 25667888888
Q ss_pred CCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC-CCeEEEEEecccccc
Q 026486 69 GPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFNVCAVYLLDSQFI 144 (238)
Q Consensus 69 ~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~~tvi~v~l~d~~~~ 144 (238)
.+.... ....++++++ ++||++++. +|+++|+||||+ ||+.++..++ ++++++.++ |.+++++ +|..
T Consensus 111 ~~~~~~--~~~~LSgGq~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l~-~~L~~~~~~~g~tiiiv----sH~~ 181 (251)
T PRK09544 111 GHLIDA--PMQKLSGGETQRVLLARALLN--RPQLLVLDEPTQGVDVNGQVALY-DLIDQLRRELDCAVLMV----SHDL 181 (251)
T ss_pred hHHHhC--ChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCcCCCHHHHHHHH-HHHHHHHHhcCCEEEEE----ecCH
Confidence 653211 1234555544 899999999 999999999999 9999999999 888888764 8888877 4888
Q ss_pred cchhHHHhhhHHH
Q 026486 145 TDVTKFISGCMAS 157 (238)
Q Consensus 145 ~d~~~~~~~~l~~ 157 (238)
.+...+++.+++.
T Consensus 182 ~~i~~~~d~i~~l 194 (251)
T PRK09544 182 HLVMAKTDEVLCL 194 (251)
T ss_pred HHHHHhCCEEEEE
Confidence 7777777765543
No 203
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.89 E-value=4.7e-23 Score=178.30 Aligned_cols=149 Identities=14% Similarity=0.147 Sum_probs=108.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCC---CceEEEeeecCCC------------CCCCC-C------CCCChhhhhh--
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETV---RRTMHIVNLDPAA------------ENFDY-P------VAMDIRELIS-- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~---~G~i~i~~~d~~~------------~~~~~-~------~~~~i~~~i~-- 58 (238)
-+++|+||||||||||+++|+|+++|+ +|+|.++|.++.. ..++| + +..++.+++.
T Consensus 31 e~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~ 110 (262)
T PRK09984 31 EMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIG 110 (262)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEccccccccCCcHHHHHHhh
Confidence 368999999999999999999999886 4999999976421 12333 2 2345554442
Q ss_pred ----------------------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHH
Q 026486 59 ----------------------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELF 113 (238)
Q Consensus 59 ----------------------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~ 113 (238)
+.++++.+|+.+.... ....++++++ +.||++++. +|+++|+||||+ ||+.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~ 186 (262)
T PRK09984 111 ALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQ--RVSTLSGGQQQRVAIARALMQ--QAKVILADEPIASLDPE 186 (262)
T ss_pred hcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhC--CccccCHHHHHHHHHHHHHhc--CCCEEEecCccccCCHH
Confidence 4556777787532111 1234555543 899999999 999999999999 9999
Q ss_pred hHHHHHHHHHHHHHh-CCCeEEEEEecccccccchhHHHhhhHHHHHH
Q 026486 114 THVPVLRNFVDHLKS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSA 160 (238)
Q Consensus 114 ~~~~~~~~ll~~l~~-~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~ 160 (238)
++..+. ++++++.+ .|.++|++ +|.......+++.+++...+
T Consensus 187 ~~~~l~-~~l~~~~~~~g~tvii~----tH~~~~~~~~~d~i~~l~~g 229 (262)
T PRK09984 187 SARIVM-DTLRDINQNDGITVVVT----LHQVDYALRYCERIVALRQG 229 (262)
T ss_pred HHHHHH-HHHHHHHHhcCCEEEEE----eCCHHHHHHhCCEEEEEECC
Confidence 999999 99999875 47888877 48777667777755444333
No 204
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.89 E-value=3.3e-23 Score=199.16 Aligned_cols=163 Identities=14% Similarity=0.177 Sum_probs=122.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecC---------------------CCCCCCC-C--------CCCC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP---------------------AAENFDY-P--------VAMD 52 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~---------------------~~~~~~~-~--------~~~~ 52 (238)
-+++|+||||||||||+++|+|+++|++|+|.+.|.+. ....++| + +.++
T Consensus 43 e~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~t 122 (623)
T PRK10261 43 ETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFT 122 (623)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCC
Confidence 36899999999999999999999999999999877421 0112333 2 2346
Q ss_pred hhhhhh-----------------HHHHHHHcCCCCCC-chhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-cc
Q 026486 53 IRELIS-----------------LEDVMEELGLGPNG-GLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IE 111 (238)
Q Consensus 53 i~~~i~-----------------~~~~l~~~~l~~~~-~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD 111 (238)
+.+++. +.++++.+|+.+.. ........++++++ ++||++++. +|++||+||||+ ||
T Consensus 123 v~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~AL~~--~P~lLllDEPt~~LD 200 (623)
T PRK10261 123 VGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSC--RPAVLIADEPTTALD 200 (623)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHHHHhC--CCCEEEEeCCCCccC
Confidence 666553 44578888885311 11111245666654 999999999 999999999999 99
Q ss_pred HHhHHHHHHHHHHHHHhC-CCeEEEEEecccccccchhHHHhhhHHHHHHHHhhcCCeeeee
Q 026486 112 LFTHVPVLRNFVDHLKSR-NFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNIL 172 (238)
Q Consensus 112 ~~~~~~~~~~ll~~l~~~-~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~~~p~~~vl 172 (238)
+.++..++ +++++++++ |.++|+| +|.+.....+++.++++..+.+....+.-.++
T Consensus 201 ~~~~~~l~-~ll~~l~~~~g~tvi~i----tHdl~~~~~~adri~vl~~G~i~~~g~~~~~~ 257 (623)
T PRK10261 201 VTIQAQIL-QLIKVLQKEMSMGVIFI----THDMGVVAEIADRVLVMYQGEAVETGSVEQIF 257 (623)
T ss_pred HHHHHHHH-HHHHHHHHhcCCEEEEE----cCCHHHHHHhCCEEEEeeCCeecccCCHHHhh
Confidence 99999999 999999754 8898888 59898888999988887777776555543433
No 205
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=7.1e-23 Score=170.90 Aligned_cols=141 Identities=16% Similarity=0.195 Sum_probs=99.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCc---CCCceEEEeeecCCC------CCCCC-------CCCCChhhhhhHHHHHHHc
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCE---TVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELISLEDVMEEL 66 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~---~~~G~i~i~~~d~~~------~~~~~-------~~~~~i~~~i~~~~~l~~~ 66 (238)
-+++|+||||||||||+++|+|+++ |++|+|.++|.++.. ..++| .+..++++++.....+.
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-- 111 (202)
T cd03233 34 EMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK-- 111 (202)
T ss_pred cEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCCCcHHHHHhhhhhhc--
Confidence 3689999999999999999999999 899999999987532 12333 22346666654322111
Q ss_pred CCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC-CCeEEEEEecccc
Q 026486 67 GLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFNVCAVYLLDSQ 142 (238)
Q Consensus 67 ~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~~tvi~v~l~d~~ 142 (238)
... ....++++.+ +.||++++. +|+++|+|||++ ||+.+++.++ ++++++.++ +.+++++. +|
T Consensus 112 -~~~------~~~~LS~Ge~qrl~laral~~--~p~llllDEPt~~LD~~~~~~~~-~~l~~~~~~~~~t~ii~~---~h 178 (202)
T cd03233 112 -GNE------FVRGISGGERKRVSIAEALVS--RASVLCWDNSTRGLDSSTALEIL-KCIRTMADVLKTTTFVSL---YQ 178 (202)
T ss_pred -ccc------chhhCCHHHHHHHHHHHHHhh--CCCEEEEcCCCccCCHHHHHHHH-HHHHHHHHhCCCEEEEEE---cC
Confidence 111 1133444443 899999999 999999999999 9999999999 899998764 55655543 34
Q ss_pred cccchhHHHhhhHHHH
Q 026486 143 FITDVTKFISGCMASL 158 (238)
Q Consensus 143 ~~~d~~~~~~~~l~~~ 158 (238)
...+...+++.+++..
T Consensus 179 ~~~~~~~~~d~i~~l~ 194 (202)
T cd03233 179 ASDEIYDLFDKVLVLY 194 (202)
T ss_pred CHHHHHHhCCeEEEEE
Confidence 4555666666554433
No 206
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=7.7e-23 Score=176.64 Aligned_cols=146 Identities=18% Similarity=0.273 Sum_probs=105.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcC-----CCceEEEeeecCCC---------CCCCC-CC-----CCChhhhhh----
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELIS---- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~-----~~G~i~i~~~d~~~---------~~~~~-~~-----~~~i~~~i~---- 58 (238)
-+++|+||||||||||+++|+|+++| ++|+|.++|.++.. ..++| ++ ..++++++.
T Consensus 39 e~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~ 118 (258)
T PRK14268 39 SVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPR 118 (258)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCccCcccHHHHHHHHHH
Confidence 36899999999999999999999975 79999999876421 22333 22 135555543
Q ss_pred ------------HHHHHHHcCCCCC--CchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHH
Q 026486 59 ------------LEDVMEELGLGPN--GGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (238)
Q Consensus 59 ------------~~~~l~~~~l~~~--~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ 121 (238)
+.++++.+++... .........++++++ ++||++++. +|+++|+||||+ ||+.++..+. +
T Consensus 119 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~-~ 195 (258)
T PRK14268 119 IHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAV--KPKIILFDEPTSALDPISTARIE-D 195 (258)
T ss_pred HcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHc--CCCEEEEeCCCcccCHHHHHHHH-H
Confidence 3446777776421 001112234555543 999999999 999999999999 9999999999 9
Q ss_pred HHHHHHhCCCeEEEEEecccccccchhHHHhhhHH
Q 026486 122 FVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMA 156 (238)
Q Consensus 122 ll~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~ 156 (238)
+++++++ +.+++++ +|...+...+++.+++
T Consensus 196 ~l~~l~~-~~tiiiv----sH~~~~~~~~~d~i~~ 225 (258)
T PRK14268 196 LIMNLKK-DYTIVIV----THNMQQAARISDYTGF 225 (258)
T ss_pred HHHHHhh-CCEEEEE----ECCHHHHHHhCCEEEE
Confidence 9998864 7788777 4887776676664433
No 207
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.88 E-value=2.8e-23 Score=176.94 Aligned_cols=136 Identities=16% Similarity=0.150 Sum_probs=94.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-------CCCCC-CC-----CCChhhhhh----------HH
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------LE 60 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~-----~~~i~~~i~----------~~ 60 (238)
+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| ++ ..++.+++. +.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~ 109 (237)
T cd03252 30 VVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALADPGMSMERVI 109 (237)
T ss_pred EEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEEEcCCchhccchHHHHhhccCCCCCHHHHH
Confidence 689999999999999999999999999999999976421 12333 22 234555543 11
Q ss_pred HHHHHcCCCC---------CCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 026486 61 DVMEELGLGP---------NGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (238)
Q Consensus 61 ~~l~~~~l~~---------~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (238)
+.++..++.. ..........++++++ ++||++++. +|+++|+|||++ ||+.++..+. ++++++.+
T Consensus 110 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~--~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~ 186 (237)
T cd03252 110 EAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIH--NPRILIFDEATSALDYESEHAIM-RNMHDICA 186 (237)
T ss_pred HHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhh--CCCEEEEeCCcccCCHHHHHHHH-HHHHHhcC
Confidence 1222222211 0000011134555543 899999999 999999999999 9999999999 88888864
Q ss_pred CCCeEEEEEecccccccch
Q 026486 129 RNFNVCAVYLLDSQFITDV 147 (238)
Q Consensus 129 ~~~tvi~v~l~d~~~~~d~ 147 (238)
|.+++++ +|.....
T Consensus 187 -~~tiii~----sH~~~~~ 200 (237)
T cd03252 187 -GRTVIII----AHRLSTV 200 (237)
T ss_pred -CCEEEEE----eCCHHHH
Confidence 7888777 4766544
No 208
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.88 E-value=3.9e-23 Score=166.99 Aligned_cols=124 Identities=15% Similarity=0.168 Sum_probs=92.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCCCCCCCCCCCChhhhhhHHHHHHHcCCCCCCchhhhHHhhh
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~~~ 82 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.... .++ ..-...++-+ .++
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~--------~~~-----~~~~~i~~~~---------qLS 84 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFAS--------PRD-----ARRAGIAMVY---------QLS 84 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCC--------HHH-----HHhcCeEEEE---------ecC
Confidence 368999999999999999999999999999999987653210 000 0000111111 033
Q ss_pred hhH--HHHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccchhHHHhhhH
Q 026486 83 DNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCM 155 (238)
Q Consensus 83 ~~~--s~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l 155 (238)
+++ ++.+|++++. +|+++++|||++ ||+.+++.+. ++++++++++.+++++ +|...+...+++.++
T Consensus 85 ~G~~qrl~laral~~--~p~illlDEP~~~LD~~~~~~l~-~~l~~~~~~~~tiii~----sh~~~~~~~~~d~~~ 153 (163)
T cd03216 85 VGERQMVEIARALAR--NARLLILDEPTAALTPAEVERLF-KVIRRLRAQGVAVIFI----SHRLDEVFEIADRVT 153 (163)
T ss_pred HHHHHHHHHHHHHhc--CCCEEEEECCCcCCCHHHHHHHH-HHHHHHHHCCCEEEEE----eCCHHHHHHhCCEEE
Confidence 333 3899999999 999999999999 9999999999 9999987668888777 477766666666443
No 209
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.88 E-value=6.3e-23 Score=177.12 Aligned_cols=145 Identities=19% Similarity=0.276 Sum_probs=103.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcC-----CCceEEEeeecCCC---------CCCCC-C------CCCChhhhhh---
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA---------ENFDY-P------VAMDIRELIS--- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~-----~~G~i~i~~~d~~~---------~~~~~-~------~~~~i~~~i~--- 58 (238)
-+++|+||||||||||+++|+|+++| ++|+|.++|.++.. ..++| + +..++++++.
T Consensus 31 e~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~ 110 (258)
T PRK14241 31 SVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGL 110 (258)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccccccCCCCcHHHHHHHHH
Confidence 36899999999999999999999974 69999999976521 12333 2 2345655543
Q ss_pred --------------HHHHHHHcCCCCC--CchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHH
Q 026486 59 --------------LEDVMEELGLGPN--GGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVL 119 (238)
Q Consensus 59 --------------~~~~l~~~~l~~~--~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~ 119 (238)
+.++++.+++.+. .........++++++ ++||++++. +|+++|+||||+ ||+.++..+.
T Consensus 111 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~ 188 (258)
T PRK14241 111 KLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAV--EPDVLLMDEPCSALDPISTLAIE 188 (258)
T ss_pred HhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHHHHHH
Confidence 2345566676421 011111234555543 899999999 999999999999 9999999998
Q ss_pred HHHHHHHHhCCCeEEEEEecccccccchhHHHhhhH
Q 026486 120 RNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCM 155 (238)
Q Consensus 120 ~~ll~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l 155 (238)
++++++++ +.++|++ +|...+...+++.++
T Consensus 189 -~~l~~~~~-~~tviiv----sH~~~~~~~~~d~i~ 218 (258)
T PRK14241 189 -DLINELKQ-DYTIVIV----THNMQQAARVSDQTA 218 (258)
T ss_pred -HHHHHHhc-CCEEEEE----ecCHHHHHHhCCEEE
Confidence 99998854 6777777 588777777766443
No 210
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=3.9e-23 Score=180.39 Aligned_cols=149 Identities=11% Similarity=0.126 Sum_probs=109.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-------CCCCC-CC-------CCChhhhhh----------
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-------AMDIRELIS---------- 58 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~-------~~~i~~~i~---------- 58 (238)
+++|+|+||||||||+++|+|+++|++|+|.++|.++.. ..++| ++ ..++.+++.
T Consensus 35 ~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~ 114 (277)
T PRK13642 35 WVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPR 114 (277)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHcCCCH
Confidence 689999999999999999999999999999999987532 12333 11 234555543
Q ss_pred ------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC
Q 026486 59 ------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR 129 (238)
Q Consensus 59 ------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~ 129 (238)
+.++++.+|+....... ...++++++ +.||++++. +|+++|+|||++ ||+.+++.+. +++++++++
T Consensus 115 ~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~lAraL~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~l~~~ 189 (277)
T PRK13642 115 EEMIKRVDEALLAVNMLDFKTRE--PARLSGGQKQRVAVAGIIAL--RPEIIILDESTSMLDPTGRQEIM-RVIHEIKEK 189 (277)
T ss_pred HHHHHHHHHHHHHCCCHhHhhCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHh
Confidence 34566777775432111 234555543 999999999 999999999999 9999999999 899998764
Q ss_pred -CCeEEEEEecccccccchhHHHhhhHHHHHHHH
Q 026486 130 -NFNVCAVYLLDSQFITDVTKFISGCMASLSAMV 162 (238)
Q Consensus 130 -~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~ 162 (238)
|.+++++ +|...+.. .++.+++...+.+
T Consensus 190 ~g~tiil~----sH~~~~~~-~~d~i~~l~~G~i 218 (277)
T PRK13642 190 YQLTVLSI----THDLDEAA-SSDRILVMKAGEI 218 (277)
T ss_pred cCCEEEEE----eCCHHHHH-hCCEEEEEECCEE
Confidence 8888887 47776654 3665554444443
No 211
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.88 E-value=5.8e-23 Score=192.76 Aligned_cols=148 Identities=14% Similarity=0.207 Sum_probs=110.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcC-CCceEEEeeecCCC--------CCCCC-C---------CCCChhhhh------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCET-VRRTMHIVNLDPAA--------ENFDY-P---------VAMDIRELI------ 57 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~-~~G~i~i~~~d~~~--------~~~~~-~---------~~~~i~~~i------ 57 (238)
-+++|+||||||||||+++|+|+++| ++|+|.++|.++.. ..++| + +..++++++
T Consensus 287 e~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~ 366 (500)
T TIGR02633 287 EILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLK 366 (500)
T ss_pred cEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhh
Confidence 36899999999999999999999995 89999999876521 12332 1 122333222
Q ss_pred ---------------hHHHHHHHcCCCC-CCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHH
Q 026486 58 ---------------SLEDVMEELGLGP-NGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (238)
Q Consensus 58 ---------------~~~~~l~~~~l~~-~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~ 118 (238)
.+.++++.+++.. .... ....++++++ ++||++++. +|+++|+||||+ ||+.++..+
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~~LSgGqkqrv~la~al~~--~p~lllLDEPt~~LD~~~~~~l 442 (500)
T TIGR02633 367 SFCFKMRIDAAAELQIIGSAIQRLKVKTASPFL--PIGRLSGGNQQKAVLAKMLLT--NPRVLILDEPTRGVDVGAKYEI 442 (500)
T ss_pred hhccCCcCCHHHHHHHHHHHHHhcCccCCCccC--ccccCCHHHHHHHHHHHHHhh--CCCEEEEcCCCCCcCHhHHHHH
Confidence 1456788888853 2111 1235666654 999999999 999999999999 999999999
Q ss_pred HHHHHHHHHhCCCeEEEEEecccccccchhHHHhhhHHHHH
Q 026486 119 LRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLS 159 (238)
Q Consensus 119 ~~~ll~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~ 159 (238)
+ +++++++++|.++|++ ||.+.....+++.+++...
T Consensus 443 ~-~~l~~l~~~g~tviiv----sHd~~~~~~~~d~v~~l~~ 478 (500)
T TIGR02633 443 Y-KLINQLAQEGVAIIVV----SSELAEVLGLSDRVLVIGE 478 (500)
T ss_pred H-HHHHHHHhCCCEEEEE----CCCHHHHHHhCCEEEEEEC
Confidence 9 9999998778888877 5888888888776654433
No 212
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.88 E-value=3.1e-23 Score=179.30 Aligned_cols=146 Identities=17% Similarity=0.201 Sum_probs=103.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCc-----CCCceEEEeeecCCC---------CCCCC-CCC-----CChhhhhh----
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPAA---------ENFDY-PVA-----MDIRELIS---- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~-----~~~G~i~i~~~d~~~---------~~~~~-~~~-----~~i~~~i~---- 58 (238)
-+++|+||||||||||+++|+|+++ |++|+|.++|.++.. ..++| +++ .++++++.
T Consensus 40 e~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~ 119 (260)
T PRK10744 40 QVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVR 119 (260)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCccCcCcHHHHHhhhHh
Confidence 3689999999999999999999986 479999999977521 12333 221 35554442
Q ss_pred -------------HHHHHHHcCCCCCC-c-hhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHH
Q 026486 59 -------------LEDVMEELGLGPNG-G-LIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (238)
Q Consensus 59 -------------~~~~l~~~~l~~~~-~-~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~ 120 (238)
+.++++.+++.+.. . .......++++++ +.||++++. +|+++|+||||+ ||+.++..+.
T Consensus 120 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l~- 196 (260)
T PRK10744 120 LFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAI--RPEVLLLDEPCSALDPISTGRIE- 196 (260)
T ss_pred hcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHHC--CCCEEEEcCCCccCCHHHHHHHH-
Confidence 34566777764210 0 0011123555543 899999999 999999999999 9999999998
Q ss_pred HHHHHHHhCCCeEEEEEecccccccchhHHHhhhHH
Q 026486 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMA 156 (238)
Q Consensus 121 ~ll~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~ 156 (238)
++++++++ +.++|++ +|...+...+++.+++
T Consensus 197 ~~L~~~~~-~~tiii~----sH~~~~~~~~~d~i~~ 227 (260)
T PRK10744 197 ELITELKQ-DYTVVIV----THNMQQAARCSDYTAF 227 (260)
T ss_pred HHHHHHhc-CCeEEEE----eCCHHHHHHhCCEEEE
Confidence 88998854 6777777 4877766666664443
No 213
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.88 E-value=3.6e-23 Score=195.44 Aligned_cols=153 Identities=14% Similarity=0.206 Sum_probs=113.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcC-----CCceEEEeeecCCC-----------CCCCC-CCC--------CChhhhh-
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA-----------ENFDY-PVA--------MDIRELI- 57 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~-----~~G~i~i~~~d~~~-----------~~~~~-~~~--------~~i~~~i- 57 (238)
+++|+||||||||||+++|+|+++| ++|+|.++|.++.. ..++| +|+ .++++++
T Consensus 37 ~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~ 116 (529)
T PRK15134 37 TLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLY 116 (529)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHH
Confidence 6899999999999999999999986 79999999876521 13444 222 2233222
Q ss_pred ----------------hHHHHHHHcCCCCCC-chhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHH
Q 026486 58 ----------------SLEDVMEELGLGPNG-GLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVP 117 (238)
Q Consensus 58 ----------------~~~~~l~~~~l~~~~-~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~ 117 (238)
.++++++.+|+.... ........++++++ ++||++++. +|+++|+||||+ ||+.++..
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~~--~p~llllDEPt~~LD~~~~~~ 194 (529)
T PRK15134 117 EVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLT--RPELLIADEPTTALDVSVQAQ 194 (529)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHhc--CCCEEEEcCCCCccCHHHHHH
Confidence 145678888886421 01112245666654 999999999 999999999999 99999999
Q ss_pred HHHHHHHHHHhC-CCeEEEEEecccccccchhHHHhhhHHHHHHHHh
Q 026486 118 VLRNFVDHLKSR-NFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQ 163 (238)
Q Consensus 118 ~~~~ll~~l~~~-~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~ 163 (238)
++ +++++++++ |.++|+| +|.......+++.+++...+.+.
T Consensus 195 l~-~~l~~l~~~~g~tvi~v----tHd~~~~~~~~dri~~l~~G~i~ 236 (529)
T PRK15134 195 IL-QLLRELQQELNMGLLFI----THNLSIVRKLADRVAVMQNGRCV 236 (529)
T ss_pred HH-HHHHHHHHhcCCeEEEE----cCcHHHHHHhcCEEEEEECCEEE
Confidence 99 999998764 8888888 58888777788777666555443
No 214
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=5.6e-23 Score=176.59 Aligned_cols=148 Identities=13% Similarity=0.226 Sum_probs=104.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCc-----CCCceEEEeeecCCC---------CCCCC-CC-----CCChhhhhh-----
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELIS----- 58 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~-----~~~G~i~i~~~d~~~---------~~~~~-~~-----~~~i~~~i~----- 58 (238)
+++|+||||||||||+++|+|+++ |++|+|.++|.++.. ..++| ++ ..++++++.
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~ 111 (251)
T PRK14251 32 LTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLKI 111 (251)
T ss_pred EEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCccCCCcHHHHHHHHHHH
Confidence 689999999999999999999997 479999999976521 12333 22 135555543
Q ss_pred ------------HHHHHHHcCCCCC--CchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHH
Q 026486 59 ------------LEDVMEELGLGPN--GGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (238)
Q Consensus 59 ------------~~~~l~~~~l~~~--~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ 121 (238)
+.++++.+++... .........++++++ ++||++++. +|+++|+|||++ ||+.++..+. +
T Consensus 112 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~~--~p~llllDEP~~~LD~~~~~~l~-~ 188 (251)
T PRK14251 112 AGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAV--RPKVVLLDEPTSALDPISSSEIE-E 188 (251)
T ss_pred cCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHhc--CCCEEEecCCCccCCHHHHHHHH-H
Confidence 2344556666321 011112234555543 899999999 999999999999 9999999999 8
Q ss_pred HHHHHHhCCCeEEEEEecccccccchhHHHhhhHHHHH
Q 026486 122 FVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLS 159 (238)
Q Consensus 122 ll~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~ 159 (238)
+++++.+ +.++|++ +|...+...+++.++....
T Consensus 189 ~l~~~~~-~~tiiii----sH~~~~~~~~~d~i~~l~~ 221 (251)
T PRK14251 189 TLMELKH-QYTFIMV----THNLQQAGRISDQTAFLMN 221 (251)
T ss_pred HHHHHHc-CCeEEEE----ECCHHHHHhhcCEEEEEEC
Confidence 8888854 6788777 4888777777765544333
No 215
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.88 E-value=6.1e-23 Score=176.42 Aligned_cols=150 Identities=18% Similarity=0.213 Sum_probs=108.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-------CCCCC-CC------CCChhhhhh----------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV------AMDIRELIS---------- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~------~~~i~~~i~---------- 58 (238)
-+++|+||||||||||+++|+|+++ .+|+|.++|.++.. ..++| ++ ..++.+++.
T Consensus 23 ei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~ 101 (248)
T PRK03695 23 EILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQYLTLHQPDKTRTE 101 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHHHHHhcCccCCCcH
Confidence 4689999999999999999999986 48999999986532 12333 21 234554432
Q ss_pred -----HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhc-----cCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 026486 59 -----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDN-----YLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (238)
Q Consensus 59 -----~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~-----~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~ 125 (238)
+.++++.+++.+..... ...++++++ ++||++++. -++|+++|+|||++ ||+.++..+. +++++
T Consensus 102 ~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~-~~L~~ 178 (248)
T PRK03695 102 AVASALNEVAEALGLDDKLGRS--VNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALD-RLLSE 178 (248)
T ss_pred HHHHHHHHHHHHcCCHhHhcCC--cccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHH-HHHHH
Confidence 45678888886432211 234555543 899999984 01569999999999 9999999999 99999
Q ss_pred HHhCCCeEEEEEecccccccchhHHHhhhHHHHHH
Q 026486 126 LKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSA 160 (238)
Q Consensus 126 l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~ 160 (238)
++++|.+++++ +|...+...+++.+++...+
T Consensus 179 ~~~~~~tvi~~----sH~~~~~~~~~d~i~~l~~G 209 (248)
T PRK03695 179 LCQQGIAVVMS----SHDLNHTLRHADRVWLLKQG 209 (248)
T ss_pred HHhCCCEEEEE----ecCHHHHHHhCCEEEEEECC
Confidence 87678888877 58887777777755544433
No 216
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.88 E-value=9.9e-23 Score=175.04 Aligned_cols=140 Identities=11% Similarity=0.155 Sum_probs=99.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC--CcCCCceEEEeeecCCC------C--CCCC-CC------CCChhhhh--------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRH--CETVRRTMHIVNLDPAA------E--NFDY-PV------AMDIRELI-------- 57 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~--l~~~~G~i~i~~~d~~~------~--~~~~-~~------~~~i~~~i-------- 57 (238)
-+++|+||||||||||+++|+|+ ++|++|+|.++|.+... . .+.| ++ ..++.+++
T Consensus 34 e~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~ 113 (252)
T CHL00131 34 EIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKR 113 (252)
T ss_pred cEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheeeEEEEeccccccccccHHHHHHHhhhhhh
Confidence 46899999999999999999998 57999999999876532 1 1212 11 12333221
Q ss_pred ---------------hHHHHHHHcCCCC-CCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHH
Q 026486 58 ---------------SLEDVMEELGLGP-NGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (238)
Q Consensus 58 ---------------~~~~~l~~~~l~~-~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~ 118 (238)
.+.++++.+++.+ ..... ..+.++++++ ++||++++. +|+++|+||||+ ||+.++..+
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~LSgG~~qrv~la~al~~--~p~llllDEPt~~LD~~~~~~l 190 (252)
T CHL00131 114 KFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRN-VNEGFSGGEKKRNEILQMALL--DSELAILDETDSGLDIDALKII 190 (252)
T ss_pred cccccccccHHHHHHHHHHHHHHcCCchhhhccc-cccCCCHHHHHHHHHHHHHHc--CCCEEEEcCCcccCCHHHHHHH
Confidence 1345677778763 11111 1112555543 999999999 999999999999 999999999
Q ss_pred HHHHHHHHHhCCCeEEEEEecccccccchhHH
Q 026486 119 LRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF 150 (238)
Q Consensus 119 ~~~ll~~l~~~~~tvi~v~l~d~~~~~d~~~~ 150 (238)
. ++++++.+.|.++|++ +|.......+
T Consensus 191 ~-~~l~~~~~~g~tii~~----tH~~~~~~~~ 217 (252)
T CHL00131 191 A-EGINKLMTSENSIILI----THYQRLLDYI 217 (252)
T ss_pred H-HHHHHHHhCCCEEEEE----ecCHHHHHhh
Confidence 9 9999887668888877 4766544443
No 217
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=4.3e-23 Score=178.23 Aligned_cols=149 Identities=17% Similarity=0.247 Sum_probs=104.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCc--C---CCceEEEeeecCCC---------CCCCC-CCC-----CChhhhhh-----
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCE--T---VRRTMHIVNLDPAA---------ENFDY-PVA-----MDIRELIS----- 58 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~--~---~~G~i~i~~~d~~~---------~~~~~-~~~-----~~i~~~i~----- 58 (238)
+++|+||||||||||+++|+|+++ | ++|+|.++|.++.. ..++| +++ .++++++.
T Consensus 40 ~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~ 119 (259)
T PRK14274 40 VTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNPFPQSIFDNVAYGPRI 119 (259)
T ss_pred EEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCcccccCHHHHHHhHHHh
Confidence 689999999999999999999987 3 58999999986531 22344 221 25555442
Q ss_pred ------------HHHHHHHcCCCCC--CchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHH
Q 026486 59 ------------LEDVMEELGLGPN--GGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (238)
Q Consensus 59 ------------~~~~l~~~~l~~~--~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ 121 (238)
+.++++.+++.+. .........++++++ +.||++++. +|+++++||||+ ||+.++..+. +
T Consensus 120 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~-~ 196 (259)
T PRK14274 120 HGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALAT--NPDVLLMDEPTSALDPVSTRKIE-E 196 (259)
T ss_pred cCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-H
Confidence 2334556666431 001111233555543 899999999 999999999999 9999999998 8
Q ss_pred HHHHHHhCCCeEEEEEecccccccchhHHHhhhHHHHHH
Q 026486 122 FVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSA 160 (238)
Q Consensus 122 ll~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~ 160 (238)
+++++++ +.++|++ +|...+...+++.+++...+
T Consensus 197 ~l~~~~~-~~tiiiv----tH~~~~~~~~~d~i~~l~~G 230 (259)
T PRK14274 197 LILKLKE-KYTIVIV----THNMQQAARVSDQTAFFYMG 230 (259)
T ss_pred HHHHHhc-CCEEEEE----EcCHHHHHHhCCEEEEEECC
Confidence 9999864 6788777 48877777777755444333
No 218
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.88 E-value=4.7e-23 Score=173.58 Aligned_cols=143 Identities=19% Similarity=0.178 Sum_probs=101.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-------CCCCC-CC-----CCChhhhhh----------HH
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------LE 60 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~-----~~~i~~~i~----------~~ 60 (238)
+++|+||||||||||+++|+|+.+|++|+|.++|.++.. ..++| ++ ..++.+++. +.
T Consensus 32 ~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~ 111 (220)
T cd03245 32 KVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLADDERIL 111 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCccccchHHHHhhcCCCCCCHHHHH
Confidence 689999999999999999999999999999999876421 12333 22 135555542 34
Q ss_pred HHHHHcCCCCCCchhh---------hHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 026486 61 DVMEELGLGPNGGLIY---------CMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (238)
Q Consensus 61 ~~l~~~~l~~~~~~~~---------~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (238)
++++.+++.+...... ....++++++ +.||++++. +|+++|+||||+ ||+.++..++ ++++++++
T Consensus 112 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~ 188 (220)
T cd03245 112 RAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLN--DPPILLLDEPTSAMDMNSEERLK-ERLRQLLG 188 (220)
T ss_pred HHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhc--CCCEEEEeCccccCCHHHHHHHH-HHHHHhcC
Confidence 5666666643211000 0124555543 899999999 999999999999 9999999999 88988865
Q ss_pred CCCeEEEEEecccccccchhHHHhhhH
Q 026486 129 RNFNVCAVYLLDSQFITDVTKFISGCM 155 (238)
Q Consensus 129 ~~~tvi~v~l~d~~~~~d~~~~~~~~l 155 (238)
. .++|++ +|..... .+++.++
T Consensus 189 ~-~tii~~----sH~~~~~-~~~d~v~ 209 (220)
T cd03245 189 D-KTLIII----THRPSLL-DLVDRII 209 (220)
T ss_pred C-CEEEEE----eCCHHHH-HhCCEEE
Confidence 4 677776 4766543 4555443
No 219
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=5.5e-23 Score=176.63 Aligned_cols=148 Identities=17% Similarity=0.235 Sum_probs=104.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC---CcC--CCceEEEeeecCCC---------CCCCC-CCC-----CChhhhhh----
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRH---CET--VRRTMHIVNLDPAA---------ENFDY-PVA-----MDIRELIS---- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~---l~~--~~G~i~i~~~d~~~---------~~~~~-~~~-----~~i~~~i~---- 58 (238)
-+++|+||||||||||+++|+|+ +++ ++|+|.++|.++.. ..++| +++ .++.+++.
T Consensus 30 e~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~ 109 (250)
T PRK14245 30 SVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFPKSIFENVAYGLR 109 (250)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheEEEecCCccCcccHHHHHHHHHH
Confidence 36899999999999999999997 454 58999999976531 12343 221 25554442
Q ss_pred -------------HHHHHHHcCCCCC--CchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHH
Q 026486 59 -------------LEDVMEELGLGPN--GGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (238)
Q Consensus 59 -------------~~~~l~~~~l~~~--~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~ 120 (238)
+.++++.+++.+. .........++++++ ++||++++. +|+++|+||||+ ||+.++..+.
T Consensus 110 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l~- 186 (250)
T PRK14245 110 VNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAV--SPSVLLMDEPASALDPISTAKVE- 186 (250)
T ss_pred HcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH-
Confidence 3456667777431 001111234555543 899999999 999999999999 9999999999
Q ss_pred HHHHHHHhCCCeEEEEEecccccccchhHHHhhhHHHH
Q 026486 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASL 158 (238)
Q Consensus 121 ~ll~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~ 158 (238)
++++++. ++.++|++ +|...+...+++.++...
T Consensus 187 ~~l~~~~-~~~tiiiv----tH~~~~~~~~~d~v~~l~ 219 (250)
T PRK14245 187 ELIHELK-KDYTIVIV----THNMQQAARVSDKTAFFY 219 (250)
T ss_pred HHHHHHh-cCCeEEEE----eCCHHHHHhhCCEEEEEE
Confidence 9999885 47788777 487777667766554433
No 220
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.88 E-value=1.7e-22 Score=189.68 Aligned_cols=152 Identities=15% Similarity=0.139 Sum_probs=113.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcC--CCceEEEeeecCCC--------CCCCC-CC------CCChhhhh--------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCET--VRRTMHIVNLDPAA--------ENFDY-PV------AMDIRELI-------- 57 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~--~~G~i~i~~~d~~~--------~~~~~-~~------~~~i~~~i-------- 57 (238)
-+++|+||||||||||+++|+|+++| ++|+|.++|.++.. ..++| +| ..++.+++
T Consensus 28 e~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~ 107 (500)
T TIGR02633 28 ECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITL 107 (500)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCCCcHHHHHHhhccccc
Confidence 46899999999999999999999987 79999999876532 22333 22 23443332
Q ss_pred ------------hHHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHH
Q 026486 58 ------------SLEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (238)
Q Consensus 58 ------------~~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~l 122 (238)
.+.++++.+++...... .....++++++ ++||++++. +|+++|+||||+ ||+.++..+. ++
T Consensus 108 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~LSgG~~qrv~iA~al~~--~p~lllLDEPt~~LD~~~~~~l~-~~ 183 (500)
T TIGR02633 108 PGGRMAYNAMYLRAKNLLRELQLDADNVT-RPVGDYGGGQQQLVEIAKALNK--QARLLILDEPSSSLTEKETEILL-DI 183 (500)
T ss_pred cccccCHHHHHHHHHHHHHHcCCCCCccc-CchhhCCHHHHHHHHHHHHHhh--CCCEEEEeCCCCCCCHHHHHHHH-HH
Confidence 14567788888643211 11245666654 999999999 999999999999 9999999999 99
Q ss_pred HHHHHhCCCeEEEEEecccccccchhHHHhhhHHHHHHHH
Q 026486 123 VDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMV 162 (238)
Q Consensus 123 l~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~ 162 (238)
+++++++|.++|++ +|.......+++.+++...+.+
T Consensus 184 l~~l~~~g~tviii----tHd~~~~~~~~d~i~~l~~G~i 219 (500)
T TIGR02633 184 IRDLKAHGVACVYI----SHKLNEVKAVCDTICVIRDGQH 219 (500)
T ss_pred HHHHHhCCCEEEEE----eCcHHHHHHhCCEEEEEeCCeE
Confidence 99997778888887 4777777777777666555444
No 221
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.88 E-value=5.5e-23 Score=178.52 Aligned_cols=146 Identities=19% Similarity=0.266 Sum_probs=103.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcC-----CCceEEEeeecCCC---------CCCCC-CCC-----CChhhhhh----
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA---------ENFDY-PVA-----MDIRELIS---- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~-----~~G~i~i~~~d~~~---------~~~~~-~~~-----~~i~~~i~---- 58 (238)
-+++|+||||||||||+++|+|+++| ++|+|.++|.++.. ..++| ++. .++.+++.
T Consensus 46 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~ 125 (267)
T PRK14235 46 TVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPFPKSIYENVAYGPR 125 (267)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCCCCCCcHHHHHHHHHH
Confidence 46899999999999999999999975 89999999976531 12333 221 25555442
Q ss_pred --------------HHHHHHHcCCCCC--CchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHH
Q 026486 59 --------------LEDVMEELGLGPN--GGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVL 119 (238)
Q Consensus 59 --------------~~~~l~~~~l~~~--~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~ 119 (238)
+.++++.+++... .........++++++ ++||++++. +|+++|+|||++ ||+.+++.+.
T Consensus 126 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l~ 203 (267)
T PRK14235 126 IHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAV--SPEVILMDEPCSALDPIATAKVE 203 (267)
T ss_pred hcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCCcCCCHHHHHHHH
Confidence 2345666777431 000011233555543 899999999 999999999999 9999999999
Q ss_pred HHHHHHHHhCCCeEEEEEecccccccchhHHHhhhHH
Q 026486 120 RNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMA 156 (238)
Q Consensus 120 ~~ll~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~ 156 (238)
++++++.+ +.+++++ +|.......+++.+++
T Consensus 204 -~~L~~l~~-~~tiiiv----tH~~~~~~~~~d~v~~ 234 (267)
T PRK14235 204 -ELIDELRQ-NYTIVIV----THSMQQAARVSQRTAF 234 (267)
T ss_pred -HHHHHHhc-CCeEEEE----EcCHHHHHhhCCEEEE
Confidence 99998865 6777777 4777766666664443
No 222
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=1.9e-22 Score=167.03 Aligned_cols=131 Identities=14% Similarity=0.201 Sum_probs=97.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCC--cCCCceEEEeeecCC---CCCCCC-------CCCCChhhhhhHHHHHHHcCCCC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHC--ETVRRTMHIVNLDPA---AENFDY-------PVAMDIRELISLEDVMEELGLGP 70 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l--~~~~G~i~i~~~d~~---~~~~~~-------~~~~~i~~~i~~~~~l~~~~l~~ 70 (238)
-+++|+||||||||||+++|+|+. +|++|+|.++|.++. ...+.| .+..++++++.....++
T Consensus 34 e~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~------ 107 (192)
T cd03232 34 TLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREALRFSALLR------ 107 (192)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceEEecccCccccCCcHHHHHHHHHHHh------
Confidence 368999999999999999999986 489999999997752 122333 22346666665432211
Q ss_pred CCchhhhHHhhhhhH--HHHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccc-
Q 026486 71 NGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITD- 146 (238)
Q Consensus 71 ~~~~~~~~~~~~~~~--s~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~tvi~v~l~d~~~~~d- 146 (238)
.++++. ++.||++++. +|+++++|||++ ||+.++..++ ++++++++.+.+++++ +|...+
T Consensus 108 ---------~LSgGe~qrv~la~al~~--~p~vlllDEP~~~LD~~~~~~l~-~~l~~~~~~~~tiiiv----tH~~~~~ 171 (192)
T cd03232 108 ---------GLSVEQRKRLTIGVELAA--KPSILFLDEPTSGLDSQAAYNIV-RFLKKLADSGQAILCT----IHQPSAS 171 (192)
T ss_pred ---------cCCHHHhHHHHHHHHHhc--CCcEEEEeCCCcCCCHHHHHHHH-HHHHHHHHcCCEEEEE----EcCChHH
Confidence 244443 3899999999 999999999999 9999999999 8899887668888777 476652
Q ss_pred hhHHHhhhH
Q 026486 147 VTKFISGCM 155 (238)
Q Consensus 147 ~~~~~~~~l 155 (238)
...+++.++
T Consensus 172 ~~~~~d~i~ 180 (192)
T cd03232 172 IFEKFDRLL 180 (192)
T ss_pred HHhhCCEEE
Confidence 445555443
No 223
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.88 E-value=5.4e-23 Score=173.09 Aligned_cols=157 Identities=15% Similarity=0.145 Sum_probs=122.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecC--CCCCCCCCCCCChhhhhh----------------HHHHHHH
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP--AAENFDYPVAMDIRELIS----------------LEDVMEE 65 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~--~~~~~~~~~~~~i~~~i~----------------~~~~l~~ 65 (238)
.+||+|+||||||||+|+|+|.++|++|+|.+.|.-. -....++.+++|.++++. ++++.+.
T Consensus 55 ~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~G~~~~ei~~~~~eIieF 134 (249)
T COG1134 55 RVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRGLILGLTRKEIDEKVDEIIEF 134 (249)
T ss_pred EEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhcccCCCcccchHHHHHHHHHHhCccHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999998643 234567788889898875 6777777
Q ss_pred cCCCCCCchhhhHHhhhhhHHHHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEEecccccc
Q 026486 66 LGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFI 144 (238)
Q Consensus 66 ~~l~~~~~~~~~~~~~~~~~s~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~tvi~v~l~d~~~~ 144 (238)
-+||+..... +..+++++...||-+++...+|++||+||-.+ -|..-+++.. +.++++.+++.++++| ||.+
T Consensus 135 aELG~fi~~P--vktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~-~rl~e~~~~~~tiv~V----SHd~ 207 (249)
T COG1134 135 AELGDFIDQP--VKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCL-ERLNELVEKNKTIVLV----SHDL 207 (249)
T ss_pred HHHHHHhhCc--hhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHH-HHHHHHHHcCCEEEEE----ECCH
Confidence 7887764332 45567777655555555444999999999999 9999999988 8888886677889888 5888
Q ss_pred cchhHHHhhhHHHHHHHHhhcCC
Q 026486 145 TDVTKFISGCMASLSAMVQLELP 167 (238)
Q Consensus 145 ~d~~~~~~~~l~~~~~~~~~~~p 167 (238)
.-..++|+++++...|.++....
T Consensus 208 ~~I~~~Cd~~i~l~~G~i~~~G~ 230 (249)
T COG1134 208 GAIKQYCDRAIWLEHGQIRMEGS 230 (249)
T ss_pred HHHHHhcCeeEEEeCCEEEEcCC
Confidence 88889998777665555544433
No 224
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.88 E-value=1.6e-22 Score=165.66 Aligned_cols=112 Identities=16% Similarity=0.197 Sum_probs=89.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCCCCCCC-CCCCChhhhhhHHHHHHHcCCCCCCchhhhHHhh
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDY-PVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~-~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~~ 81 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.+ +.| ++... +
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~-----i~~~~q~~~----------------------------L 72 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT-----PVYKPQYID----------------------------L 72 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE-----EEEEcccCC----------------------------C
Confidence 4689999999999999999999999999999998864 233 22111 2
Q ss_pred hhh--HHHHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCC-CeEEEEEecccccccchhHHHhhh
Q 026486 82 EDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN-FNVCAVYLLDSQFITDVTKFISGC 154 (238)
Q Consensus 82 ~~~--~s~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~-~tvi~v~l~d~~~~~d~~~~~~~~ 154 (238)
+++ +++++|++++. +|+++++|||++ ||+.++..+. +.++++++++ .+++++ +|.......+++.+
T Consensus 73 SgGq~qrv~laral~~--~p~lllLDEPts~LD~~~~~~l~-~~l~~~~~~~~~tiiiv----sH~~~~~~~~~d~i 142 (177)
T cd03222 73 SGGELQRVAIAAALLR--NATFYLFDEPSAYLDIEQRLNAA-RAIRRLSEEGKKTALVV----EHDLAVLDYLSDRI 142 (177)
T ss_pred CHHHHHHHHHHHHHhc--CCCEEEEECCcccCCHHHHHHHH-HHHHHHHHcCCCEEEEE----ECCHHHHHHhCCEE
Confidence 233 33899999999 999999999999 9999999999 8888886654 788777 47776666655543
No 225
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=4.7e-23 Score=174.59 Aligned_cols=136 Identities=18% Similarity=0.173 Sum_probs=94.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-------CCCCC-CCC-----CChhhhhh----------HH
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PVA-----MDIRELIS----------LE 60 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~~-----~~i~~~i~----------~~ 60 (238)
+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| +++ .++.+++. +.
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~ 110 (229)
T cd03254 31 TVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVI 110 (229)
T ss_pred EEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEEecCCchhhhhHHHHHHhccCCCCCHHHHH
Confidence 689999999999999999999999999999999876431 22334 221 14444432 22
Q ss_pred HHHHHcCCCCCCc---------hhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 026486 61 DVMEELGLGPNGG---------LIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (238)
Q Consensus 61 ~~l~~~~l~~~~~---------~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (238)
+.++.+++..... .......++++++ +.||++++. +|+++|+|||++ ||+.++..++ +++++++
T Consensus 111 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~--~p~llllDEP~~~LD~~~~~~l~-~~l~~~~- 186 (229)
T cd03254 111 EAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLR--DPKILILDEATSNIDTETEKLIQ-EALEKLM- 186 (229)
T ss_pred HHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhc--CCCEEEEeCccccCCHHHHHHHH-HHHHHhc-
Confidence 2333333321000 0000123444443 899999999 999999999999 9999999999 8888885
Q ss_pred CCCeEEEEEecccccccch
Q 026486 129 RNFNVCAVYLLDSQFITDV 147 (238)
Q Consensus 129 ~~~tvi~v~l~d~~~~~d~ 147 (238)
++.+++++ +|...+.
T Consensus 187 ~~~tii~~----sh~~~~~ 201 (229)
T cd03254 187 KGRTSIII----AHRLSTI 201 (229)
T ss_pred CCCEEEEE----ecCHHHH
Confidence 47888777 4666544
No 226
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.88 E-value=3.5e-23 Score=176.46 Aligned_cols=143 Identities=15% Similarity=0.141 Sum_probs=97.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-------CCCCC-CCC-----CChhhhhh----------H
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PVA-----MDIRELIS----------L 59 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~~-----~~i~~~i~----------~ 59 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| +++ .++++++. .
T Consensus 30 e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~ 109 (238)
T cd03249 30 KTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKPDATDEEV 109 (238)
T ss_pred CEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhhhhHHHHhhccCCCCCHHHH
Confidence 3689999999999999999999999999999999976531 22333 221 24555543 1
Q ss_pred HHHHHHcCCCCC------C---chhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 026486 60 EDVMEELGLGPN------G---GLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (238)
Q Consensus 60 ~~~l~~~~l~~~------~---~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~ 127 (238)
.+.++..++... + ........++++++ +.||++++. +|+++|+|||++ ||+.++..++ +++++++
T Consensus 110 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~--~p~llllDEP~~gLD~~~~~~l~-~~l~~~~ 186 (238)
T cd03249 110 EEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLR--NPKILLLDEATSALDAESEKLVQ-EALDRAM 186 (238)
T ss_pred HHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhc--CCCEEEEeCccccCCHHHHHHHH-HHHHHhc
Confidence 112222222110 0 00000123455443 899999999 999999999999 9999999999 8888886
Q ss_pred hCCCeEEEEEecccccccchhHHHhhh
Q 026486 128 SRNFNVCAVYLLDSQFITDVTKFISGC 154 (238)
Q Consensus 128 ~~~~tvi~v~l~d~~~~~d~~~~~~~~ 154 (238)
+|.+++++ +|...+.. +++.+
T Consensus 187 -~g~~vi~~----sh~~~~~~-~~d~v 207 (238)
T cd03249 187 -KGRTTIVI----AHRLSTIR-NADLI 207 (238)
T ss_pred -CCCEEEEE----eCCHHHHh-hCCEE
Confidence 67888777 47766554 45543
No 227
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=9e-23 Score=175.50 Aligned_cols=149 Identities=17% Similarity=0.250 Sum_probs=105.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCc--C---CCceEEEeeecCCC---------CCCCC-C------CCCChhhhhh----
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCE--T---VRRTMHIVNLDPAA---------ENFDY-P------VAMDIRELIS---- 58 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~--~---~~G~i~i~~~d~~~---------~~~~~-~------~~~~i~~~i~---- 58 (238)
+++|+||||||||||+++|+|+++ | ++|+|.++|.++.. ..++| + +..++++++.
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~ 111 (252)
T PRK14256 32 VTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYK 111 (252)
T ss_pred EEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHH
Confidence 689999999999999999999986 3 58999999976531 12333 2 2245555442
Q ss_pred -------------HHHHHHHcCCCCCC--chhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHH
Q 026486 59 -------------LEDVMEELGLGPNG--GLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (238)
Q Consensus 59 -------------~~~~l~~~~l~~~~--~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~ 120 (238)
+.++++.+++.... ........++++++ ++||++++. +|+++|+|||++ ||+.++..+.
T Consensus 112 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~--~p~llllDEP~~gLD~~~~~~l~- 188 (252)
T PRK14256 112 LNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAV--KPEVILMDEPASALDPISTLKIE- 188 (252)
T ss_pred hcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-
Confidence 34455666764310 00011223555543 899999999 999999999999 9999999999
Q ss_pred HHHHHHHhCCCeEEEEEecccccccchhHHHhhhHHHHHH
Q 026486 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSA 160 (238)
Q Consensus 121 ~ll~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~ 160 (238)
++++++.+ +.++|++ +|...+...+++.+++...+
T Consensus 189 ~~l~~~~~-~~tiiiv----sH~~~~~~~~~d~i~~l~~G 223 (252)
T PRK14256 189 ELIEELKE-KYTIIIV----THNMQQAARVSDYTAFFYMG 223 (252)
T ss_pred HHHHHHHh-CCcEEEE----ECCHHHHHhhCCEEEEEECC
Confidence 88999865 5777777 58887777777755544333
No 228
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.88 E-value=8.7e-23 Score=192.48 Aligned_cols=150 Identities=13% Similarity=0.108 Sum_probs=110.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEe-eec---CC----------CCCCCC-CC------CCChhhhhh----
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV-NLD---PA----------AENFDY-PV------AMDIRELIS---- 58 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~-~~d---~~----------~~~~~~-~~------~~~i~~~i~---- 58 (238)
+++|+||||||||||+++|+|+++|++|+|.++ |.+ +. ...++| +| ..++.+++.
T Consensus 312 ~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~ 391 (520)
T TIGR03269 312 IFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIG 391 (520)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHH
Confidence 689999999999999999999999999999996 531 10 122344 22 345665552
Q ss_pred -----------HHHHHHHcCCCCCC---chhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHH
Q 026486 59 -----------LEDVMEELGLGPNG---GLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (238)
Q Consensus 59 -----------~~~~l~~~~l~~~~---~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ 121 (238)
+.++++.+++.... ........++++++ ++||++++. +|+++|+||||+ ||+.+++.++ +
T Consensus 392 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~--~p~lLllDEPt~~LD~~~~~~l~-~ 468 (520)
T TIGR03269 392 LELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIK--EPRIVILDEPTGTMDPITKVDVT-H 468 (520)
T ss_pred cCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-H
Confidence 34567888886410 01122345666654 899999999 999999999999 9999999999 9
Q ss_pred HHHHHHh-CCCeEEEEEecccccccchhHHHhhhHHHHHH
Q 026486 122 FVDHLKS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSA 160 (238)
Q Consensus 122 ll~~l~~-~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~ 160 (238)
+++++++ .|.++|++ +|.+.....+++.+++...+
T Consensus 469 ~l~~l~~~~g~tvi~v----sHd~~~~~~~~d~i~~l~~G 504 (520)
T TIGR03269 469 SILKAREEMEQTFIIV----SHDMDFVLDVCDRAALMRDG 504 (520)
T ss_pred HHHHHHHHcCcEEEEE----eCCHHHHHHhCCEEEEEECC
Confidence 9999865 48888888 48887777777765544333
No 229
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=1e-22 Score=175.08 Aligned_cols=150 Identities=16% Similarity=0.237 Sum_probs=105.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcC-----CCceEEEeeecCCC---------CCCCC-CC-----CCChhhhhh----
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELIS---- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~-----~~G~i~i~~~d~~~---------~~~~~-~~-----~~~i~~~i~---- 58 (238)
-+++|+||||||||||+++|+|+.+| ++|+|.++|.++.. ..++| ++ ..++++++.
T Consensus 31 e~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~ 110 (251)
T PRK14270 31 KITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPR 110 (251)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCcCCCcHHHHHHhHHH
Confidence 36899999999999999999999875 78999999977531 12333 22 135555543
Q ss_pred -------------HHHHHHHcCCCCC--CchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHH
Q 026486 59 -------------LEDVMEELGLGPN--GGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (238)
Q Consensus 59 -------------~~~~l~~~~l~~~--~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~ 120 (238)
+.++++.+++.+. .........++++++ ++||++++. +|+++|+|||++ ||+.++..+.
T Consensus 111 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEP~~~LD~~~~~~l~- 187 (251)
T PRK14270 111 IHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAV--KPDVILMDEPTSALDPISTLKIE- 187 (251)
T ss_pred hcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-
Confidence 2345666666321 000111233555543 899999999 999999999999 9999999998
Q ss_pred HHHHHHHhCCCeEEEEEecccccccchhHHHhhhHHHHHH
Q 026486 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSA 160 (238)
Q Consensus 121 ~ll~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~ 160 (238)
++++++.+ +.+++++ +|...+...+++.+++...+
T Consensus 188 ~~L~~~~~-~~tiiiv----sH~~~~~~~~~d~v~~l~~G 222 (251)
T PRK14270 188 DLMVELKK-EYTIVIV----THNMQQASRVSDYTAFFLMG 222 (251)
T ss_pred HHHHHHHh-CCeEEEE----EcCHHHHHHhcCEEEEEECC
Confidence 88988865 5777777 48777666666655443333
No 230
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=9.4e-23 Score=174.87 Aligned_cols=146 Identities=19% Similarity=0.225 Sum_probs=104.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCc---CCCceEEEeeecCCC-------CCCCC-CCC-----CChhhhhh--------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCE---TVRRTMHIVNLDPAA-------ENFDY-PVA-----MDIRELIS-------- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~---~~~G~i~i~~~d~~~-------~~~~~-~~~-----~~i~~~i~-------- 58 (238)
-+++|+||||||||||+++|+|+++ |++|+|.++|.++.. ..++| +++ .++++++.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~~tv~eni~~~~~~~~~ 108 (246)
T PRK14269 29 KITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFVKSIYENISYAPKLHGM 108 (246)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCccccccHHHHhhhHHhhcCc
Confidence 3689999999999999999999974 689999999977532 12333 221 25555542
Q ss_pred ----------HHHHHHHcCCCCCC-c-hhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHH
Q 026486 59 ----------LEDVMEELGLGPNG-G-LIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV 123 (238)
Q Consensus 59 ----------~~~~l~~~~l~~~~-~-~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll 123 (238)
+.++++.+++.+.- . .......++++.+ +++|++++. +|+++++|||++ ||+.++..+. +.+
T Consensus 109 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~--~p~lllLDEP~~~LD~~~~~~l~-~~l 185 (246)
T PRK14269 109 IKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAI--KPKLLLLDEPTSALDPISSGVIE-ELL 185 (246)
T ss_pred ccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHH
Confidence 33567777875310 0 0011123555543 899999999 999999999999 9999999998 888
Q ss_pred HHHHhCCCeEEEEEecccccccchhHHHhhhHH
Q 026486 124 DHLKSRNFNVCAVYLLDSQFITDVTKFISGCMA 156 (238)
Q Consensus 124 ~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~ 156 (238)
+++.+ +.+++++ +|...+...+++.+++
T Consensus 186 ~~~~~-~~tiii~----tH~~~~~~~~~d~i~~ 213 (246)
T PRK14269 186 KELSH-NLSMIMV----THNMQQGKRVADYTAF 213 (246)
T ss_pred HHHhC-CCEEEEE----ecCHHHHHhhCcEEEE
Confidence 88854 7888777 4877766666664443
No 231
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.88 E-value=5.4e-23 Score=194.27 Aligned_cols=149 Identities=17% Similarity=0.211 Sum_probs=110.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC----------CCCCC-CC--------CCChhhhhh-----
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-PV--------AMDIRELIS----- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~----------~~~~~-~~--------~~~i~~~i~----- 58 (238)
-+++|+||||||||||+++|+|+++ ++|+|+++|.++.. ..++| +| ..++.+++.
T Consensus 313 e~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~ 391 (529)
T PRK15134 313 ETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRV 391 (529)
T ss_pred CEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHh
Confidence 3689999999999999999999985 89999999976421 22444 22 235554442
Q ss_pred -------------HHHHHHHcCCCC-CCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHH
Q 026486 59 -------------LEDVMEELGLGP-NGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (238)
Q Consensus 59 -------------~~~~l~~~~l~~-~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ 121 (238)
+.++++.+++.+ .... ....++++++ ++||++++. +|+++|+||||+ ||+.++..++ +
T Consensus 392 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~~LSgG~~qrv~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~ 466 (529)
T PRK15134 392 HQPTLSAAQREQQVIAVMEEVGLDPETRHR--YPAEFSGGQRQRIAIARALIL--KPSLIILDEPTSSLDKTVQAQIL-A 466 (529)
T ss_pred ccccCChHHHHHHHHHHHHHcCCCHHHHhc--CCccCCHHHHHHHHHHHHHhC--CCCEEEeeCCccccCHHHHHHHH-H
Confidence 345677888853 2111 1234666654 999999999 999999999999 9999999999 9
Q ss_pred HHHHHHhC-CCeEEEEEecccccccchhHHHhhhHHHHHHH
Q 026486 122 FVDHLKSR-NFNVCAVYLLDSQFITDVTKFISGCMASLSAM 161 (238)
Q Consensus 122 ll~~l~~~-~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~ 161 (238)
++++++++ |.++|++ +|.+.....+++.+++...+.
T Consensus 467 ~l~~~~~~~~~tvi~v----sHd~~~~~~~~d~i~~l~~G~ 503 (529)
T PRK15134 467 LLKSLQQKHQLAYLFI----SHDLHVVRALCHQVIVLRQGE 503 (529)
T ss_pred HHHHHHHhhCCEEEEE----eCCHHHHHHhcCeEEEEECCE
Confidence 99998764 8888888 488877777777655544443
No 232
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=1.3e-22 Score=164.87 Aligned_cols=121 Identities=21% Similarity=0.272 Sum_probs=88.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-------CCCCC-CCCCChhhhhhHHHHHHHcCCCCCCch
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PVAMDIRELISLEDVMEELGLGPNGGL 74 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~~~~i~~~i~~~~~l~~~~l~~~~~~ 74 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| +++..+.+ .++.+.+
T Consensus 29 ~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~-~t~~e~l----------- 96 (171)
T cd03228 29 EKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFS-GTIRENI----------- 96 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhcc-chHHHHh-----------
Confidence 3689999999999999999999999999999999976532 12333 22211111 1222211
Q ss_pred hhhHHhhhhhH--HHHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccchhH
Q 026486 75 IYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTK 149 (238)
Q Consensus 75 ~~~~~~~~~~~--s~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~tvi~v~l~d~~~~~d~~~ 149 (238)
++++. ++.||++++. +|+++|+|||++ ||+.++..+. ++++++++ +.+++++ +|...+...
T Consensus 97 ------LS~G~~~rl~la~al~~--~p~llllDEP~~gLD~~~~~~l~-~~l~~~~~-~~tii~~----sh~~~~~~~ 160 (171)
T cd03228 97 ------LSGGQRQRIAIARALLR--DPPILILDEATSALDPETEALIL-EALRALAK-GKTVIVI----AHRLSTIRD 160 (171)
T ss_pred ------hCHHHHHHHHHHHHHhc--CCCEEEEECCCcCCCHHHHHHHH-HHHHHhcC-CCEEEEE----ecCHHHHHh
Confidence 33332 3899999999 999999999999 9999999999 88888854 6777766 466654443
No 233
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.88 E-value=3.1e-22 Score=163.48 Aligned_cols=136 Identities=15% Similarity=0.208 Sum_probs=107.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC---------CCCCCCCCCChhhhhh----------------
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------ENFDYPVAMDIRELIS---------------- 58 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~---------~~~~~~~~~~i~~~i~---------------- 58 (238)
.++++||+|||||||+++++|+..|..|+|.++|..+.. ++-+..|..++.|++.
T Consensus 33 ~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~ 112 (259)
T COG4525 33 LVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREI 112 (259)
T ss_pred EEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHH
Confidence 478999999999999999999999999999999986522 2223345567777765
Q ss_pred HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEE
Q 026486 59 LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCA 135 (238)
Q Consensus 59 ~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~tvi~ 135 (238)
+.+.+..+|++...... . -.++++++ +.+||||+. +|+++++|||.. ||..+++.+-.-++.-++..|+.+++
T Consensus 113 a~q~l~~VgL~~~~~~~-i-~qLSGGmrQRvGiARALa~--eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~ll 188 (259)
T COG4525 113 AHQMLALVGLEGAEHKY-I-WQLSGGMRQRVGIARALAV--EPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLL 188 (259)
T ss_pred HHHHHHHhCcccccccc-e-EeecchHHHHHHHHHHhhc--CcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEE
Confidence 77889999998765332 2 24667765 899999999 999999999998 99999999884444455567999988
Q ss_pred EEecccccccch
Q 026486 136 VYLLDSQFITDV 147 (238)
Q Consensus 136 v~l~d~~~~~d~ 147 (238)
|+ |.+.+.
T Consensus 189 iT----H~ieEA 196 (259)
T COG4525 189 IT----HDIEEA 196 (259)
T ss_pred Ee----ccHHHH
Confidence 84 766644
No 234
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.88 E-value=1.2e-22 Score=169.30 Aligned_cols=134 Identities=15% Similarity=0.158 Sum_probs=97.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHhC--CcCCCceEEEeeecCCC--------CCCCC-CCCCChhhhhhHHHHHHHcCCCCCC
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRH--CETVRRTMHIVNLDPAA--------ENFDY-PVAMDIRELISLEDVMEELGLGPNG 72 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~--l~~~~G~i~i~~~d~~~--------~~~~~-~~~~~i~~~i~~~~~l~~~~l~~~~ 72 (238)
+++|+||||||||||+++|+|+ ++|++|+|.++|.++.. ..+.| ++........++.+.++...
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~~~~----- 102 (200)
T cd03217 28 VHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFLRYVN----- 102 (200)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCccHHHHHhhcc-----
Confidence 6899999999999999999999 57999999999987642 12444 33222222223444432210
Q ss_pred chhhhHHhhhhhH--HHHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccchhH
Q 026486 73 GLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTK 149 (238)
Q Consensus 73 ~~~~~~~~~~~~~--s~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~tvi~v~l~d~~~~~d~~~ 149 (238)
..+++++ ++.+|++++. +|+++++||||+ ||+.++..+. ++++++++++.+++++ +|....+..
T Consensus 103 ------~~LS~G~~qrv~laral~~--~p~illlDEPt~~LD~~~~~~l~-~~L~~~~~~~~tiii~----sh~~~~~~~ 169 (200)
T cd03217 103 ------EGFSGGEKKRNEILQLLLL--EPDLAILDEPDSGLDIDALRLVA-EVINKLREEGKSVLII----THYQRLLDY 169 (200)
T ss_pred ------ccCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH-HHHHHHHHCCCEEEEE----ecCHHHHHH
Confidence 1244443 3899999999 999999999998 9999999999 8898887667888877 477766555
Q ss_pred -HHhhhH
Q 026486 150 -FISGCM 155 (238)
Q Consensus 150 -~~~~~l 155 (238)
+++.++
T Consensus 170 ~~~d~i~ 176 (200)
T cd03217 170 IKPDRVH 176 (200)
T ss_pred hhCCEEE
Confidence 455443
No 235
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.87 E-value=8.9e-23 Score=175.35 Aligned_cols=147 Identities=16% Similarity=0.187 Sum_probs=102.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCC--cC---CCceEEEeeecCCC---------CCCCC-CC-----CCChhhhhh----
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHC--ET---VRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELIS---- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l--~~---~~G~i~i~~~d~~~---------~~~~~-~~-----~~~i~~~i~---- 58 (238)
-+++|+||||||||||+++|+|+. +| ++|+|.++|.++.. ..++| ++ ..++++++.
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~ 111 (252)
T PRK14239 32 EITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFPMSIYENVVYGLR 111 (252)
T ss_pred cEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCccCcCcHHHHHHHHHH
Confidence 368999999999999999999985 36 48999999976521 12333 22 135666553
Q ss_pred -------------HHHHHHHcCCCCCC-c-hhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHH
Q 026486 59 -------------LEDVMEELGLGPNG-G-LIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (238)
Q Consensus 59 -------------~~~~l~~~~l~~~~-~-~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~ 120 (238)
+.++++.+++.+.- . .......++++++ ++||++++. +|+++|+|||++ ||+.++..+.
T Consensus 112 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~- 188 (252)
T PRK14239 112 LKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLAT--SPKIILLDEPTSALDPISAGKIE- 188 (252)
T ss_pred HcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCccccCHHHHHHHH-
Confidence 22244555553210 0 0011123444443 899999999 999999999999 9999999999
Q ss_pred HHHHHHHhCCCeEEEEEecccccccchhHHHhhhHHH
Q 026486 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMAS 157 (238)
Q Consensus 121 ~ll~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~ 157 (238)
++++++.+ +.+++++ +|...+...+++.+++.
T Consensus 189 ~~l~~~~~-~~tii~~----sH~~~~~~~~~d~i~~l 220 (252)
T PRK14239 189 ETLLGLKD-DYTMLLV----TRSMQQASRISDRTGFF 220 (252)
T ss_pred HHHHHHhh-CCeEEEE----ECCHHHHHHhCCEEEEE
Confidence 89998865 5777777 48887767776655443
No 236
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.87 E-value=1.9e-22 Score=166.88 Aligned_cols=158 Identities=17% Similarity=0.205 Sum_probs=124.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCCC----------------CCCCCCCCChhhhhh---------
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE----------------NFDYPVAMDIRELIS--------- 58 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~----------------~~~~~~~~~i~~~i~--------- 58 (238)
++.|+|.||||||||+++++|.+.|++|+|.++|.|+.+. ..+-.+.+||.|++.
T Consensus 34 FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~lTieENl~la~~Rg~~r 113 (263)
T COG1101 34 FVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELTIEENLALAESRGKKR 113 (263)
T ss_pred eEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcccccHHHHHHHHHhcCccc
Confidence 4779999999999999999999999999999999987431 112245778888875
Q ss_pred -------------HHHHHHHcCCCCCCchhhhHHhhhhhHHHHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHH
Q 026486 59 -------------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD 124 (238)
Q Consensus 59 -------------~~~~l~~~~l~~~~~~~~~~~~~~~~~s~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~ 124 (238)
..+-++.++++-...+...+..+++++++++.-.++.+..|++++|||-|+ |||.+...++ ++-.
T Consensus 114 gl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm-~lT~ 192 (263)
T COG1101 114 GLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVM-ELTA 192 (263)
T ss_pred ccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHH-HHHH
Confidence 445566666654333444567888888855555555444999999999998 9999999999 8888
Q ss_pred HHHh-CCCeEEEEEecccccccchhHHHhhhHHHHHHHHhhcC
Q 026486 125 HLKS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLEL 166 (238)
Q Consensus 125 ~l~~-~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~~~ 166 (238)
++.+ .+.|.++| +|.+.+.-+|=.+.++..+|.+.++.
T Consensus 193 kiV~~~klTtlMV----THnm~~Al~yG~RlImLh~G~IvlDv 231 (263)
T COG1101 193 KIVEEHKLTTLMV----THNMEDALDYGNRLIMLHSGKIVLDV 231 (263)
T ss_pred HHHHhcCCceEEE----eccHHHHHhhCCeEEEEeCCeEEEEc
Confidence 8764 58899888 49999999999999988888887654
No 237
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.87 E-value=1.1e-22 Score=212.44 Aligned_cols=155 Identities=14% Similarity=0.098 Sum_probs=122.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC------CCCCC-C------CCCChhhhhh-----------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-P------VAMDIRELIS----------- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~------~~~~~-~------~~~~i~~~i~----------- 58 (238)
-+++|+||||||||||+|+|+|+++|++|+|.+.|.++.. +.++| + +.++++|++.
T Consensus 1966 Ei~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~ 2045 (2272)
T TIGR01257 1966 ECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAE 2045 (2272)
T ss_pred cEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhcCCCHH
Confidence 3789999999999999999999999999999999987632 23444 2 2457777653
Q ss_pred -----HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCC
Q 026486 59 -----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN 130 (238)
Q Consensus 59 -----~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~ 130 (238)
++++++.+++....... ...+++|++ +.+|+|++. +|++++|||||+ ||+.+++.++ +++++++++|
T Consensus 2046 ~~~~~v~~lLe~lgL~~~~dk~--~~~LSGGqKqRLslA~ALi~--~P~VLLLDEPTsGLDp~sr~~l~-~lL~~l~~~g 2120 (2272)
T TIGR01257 2046 EIEKVANWSIQSLGLSLYADRL--AGTYSGGNKRKLSTAIALIG--CPPLVLLDEPTTGMDPQARRMLW-NTIVSIIREG 2120 (2272)
T ss_pred HHHHHHHHHHHHcCCHHHhcCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhCC
Confidence 34567788886543222 245666654 899999999 999999999999 9999999999 9999987778
Q ss_pred CeEEEEEecccccccchhHHHhhhHHHHHHHHhhcC
Q 026486 131 FNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLEL 166 (238)
Q Consensus 131 ~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~~~ 166 (238)
+++|++ +|.+++...++++++....|.+....
T Consensus 2121 ~TIILt----TH~mee~e~lcDrV~IL~~G~i~~~G 2152 (2272)
T TIGR01257 2121 RAVVLT----SHSMEECEALCTRLAIMVKGAFQCLG 2152 (2272)
T ss_pred CEEEEE----eCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 888777 59999999999988777666554433
No 238
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.87 E-value=1.4e-22 Score=173.68 Aligned_cols=141 Identities=14% Similarity=0.101 Sum_probs=96.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCC--cCCCceEEEeeecCCC--------CCCCC-CCCC------Chhhh-------h-
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHC--ETVRRTMHIVNLDPAA--------ENFDY-PVAM------DIREL-------I- 57 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l--~~~~G~i~i~~~d~~~--------~~~~~-~~~~------~i~~~-------i- 57 (238)
-+++|+||||||||||+++|+|++ +|++|+|.++|.+... ..+.| +++. +...+ +
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~ 107 (248)
T PRK09580 28 EVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVR 107 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceEEEecCchhccchhHHHHHHHhhhhhh
Confidence 368999999999999999999995 6999999999976521 12333 2211 10000 0
Q ss_pred ---------------hHHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHH
Q 026486 58 ---------------SLEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVL 119 (238)
Q Consensus 58 ---------------~~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~ 119 (238)
.++++++.+++.+..........++++++ ++||++++. +|+++++||||+ ||+.++..+.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~~--~p~illLDEPt~~LD~~~~~~l~ 185 (248)
T PRK09580 108 SYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVL--EPELCILDESDSGLDIDALKIVA 185 (248)
T ss_pred cccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHHc--CCCEEEEeCCCccCCHHHHHHHH
Confidence 13445566666321000000013555543 899999999 999999999999 9999999998
Q ss_pred HHHHHHHHhCCCeEEEEEecccccccchhHH
Q 026486 120 RNFVDHLKSRNFNVCAVYLLDSQFITDVTKF 150 (238)
Q Consensus 120 ~~ll~~l~~~~~tvi~v~l~d~~~~~d~~~~ 150 (238)
++++++++.+.+++++ +|.......+
T Consensus 186 -~~l~~l~~~~~tiii~----sH~~~~~~~~ 211 (248)
T PRK09580 186 -DGVNSLRDGKRSFIIV----THYQRILDYI 211 (248)
T ss_pred -HHHHHHHhCCCEEEEE----eCCHHHHHhh
Confidence 8899887777888777 4766544443
No 239
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=4e-22 Score=173.35 Aligned_cols=146 Identities=18% Similarity=0.227 Sum_probs=103.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCc-----CCCceEEEeeecCCC---------CCCCC-CCC-----CChhhhhh----
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPAA---------ENFDY-PVA-----MDIRELIS---- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~-----~~~G~i~i~~~d~~~---------~~~~~-~~~-----~~i~~~i~---- 58 (238)
-+++|+||||||||||+++|+|+++ |++|+|.++|.++.. ..++| +++ .++++++.
T Consensus 40 e~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~ 119 (269)
T PRK14259 40 KVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFGAR 119 (269)
T ss_pred CEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCccchhhHHHHHhhhhh
Confidence 3689999999999999999999987 589999999876521 22344 221 25555543
Q ss_pred -----------HHHHHHHcCCCCC--CchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHH
Q 026486 59 -----------LEDVMEELGLGPN--GGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (238)
Q Consensus 59 -----------~~~~l~~~~l~~~--~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~l 122 (238)
+.++++.+++... .........++++++ ++||++++. +|+++|+||||+ ||+.++..+. ++
T Consensus 120 ~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~--~p~lllLDEPt~gLD~~~~~~l~-~~ 196 (269)
T PRK14259 120 INGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAI--EPEVILMDEPCSALDPISTLKIE-ET 196 (269)
T ss_pred hcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHHHHHH-HH
Confidence 2334566665321 000111234555543 899999999 999999999999 9999999999 89
Q ss_pred HHHHHhCCCeEEEEEecccccccchhHHHhhhHH
Q 026486 123 VDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMA 156 (238)
Q Consensus 123 l~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~ 156 (238)
++++++ +.++|++ +|...+...+++.+++
T Consensus 197 l~~~~~-~~tiiiv----tH~~~~~~~~~d~i~~ 225 (269)
T PRK14259 197 MHELKK-NFTIVIV----THNMQQAVRVSDMTAF 225 (269)
T ss_pred HHHHhc-CCEEEEE----eCCHHHHHHhcCEEEE
Confidence 998854 6777777 4877777777665443
No 240
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=1.4e-22 Score=175.53 Aligned_cols=146 Identities=17% Similarity=0.220 Sum_probs=106.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcC-----CCceEEEeeecCCC---------CCCCC-CC-----CCChhhhhh----
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELIS---- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~-----~~G~i~i~~~d~~~---------~~~~~-~~-----~~~i~~~i~---- 58 (238)
-+++|+||||||||||+++|+|+++| ++|+|.++|.++.. ..++| ++ ..++.+++.
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~ 114 (261)
T PRK14263 35 EITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNPFSMSIFDNVAFGLR 114 (261)
T ss_pred CEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCCccccccHHHHHHHHHh
Confidence 37899999999999999999999986 79999999976531 12333 21 345655553
Q ss_pred -----------HHHHHHHcCCCCCCchh--hhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHH
Q 026486 59 -----------LEDVMEELGLGPNGGLI--YCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (238)
Q Consensus 59 -----------~~~~l~~~~l~~~~~~~--~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~l 122 (238)
+.++++.+++.+..... .....++++++ +.||++++. +|+++|+||||+ ||+.++..+. ++
T Consensus 115 ~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEPtsgLD~~~~~~l~-~~ 191 (261)
T PRK14263 115 LNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIAT--EPEVLLLDEPCSALDPIATRRVE-EL 191 (261)
T ss_pred hcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCCccCCHHHHHHHH-HH
Confidence 34567777775421110 11123555543 899999999 999999999999 9999999999 99
Q ss_pred HHHHHhCCCeEEEEEecccccccchhHHHhhhHH
Q 026486 123 VDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMA 156 (238)
Q Consensus 123 l~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~ 156 (238)
+++++ ++.+++++ +|...+...+++.+++
T Consensus 192 l~~~~-~~~tii~i----sH~~~~i~~~~d~v~~ 220 (261)
T PRK14263 192 MVELK-KDYTIALV----THNMQQAIRVADTTAF 220 (261)
T ss_pred HHHHh-cCCeEEEE----eCCHHHHHHhCCEEEE
Confidence 99885 46777766 5888777777775543
No 241
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.87 E-value=2.1e-22 Score=188.72 Aligned_cols=147 Identities=13% Similarity=0.175 Sum_probs=109.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC--------CCCCC-CC---------CCChhhh-----h--
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-PV---------AMDIREL-----I-- 57 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~--------~~~~~-~~---------~~~i~~~-----i-- 57 (238)
-+++|+||||||||||+++|+|+.+|++|+|.++|.++.. ..++| ++ +.++.++ +
T Consensus 275 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~ 354 (491)
T PRK10982 275 EILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRN 354 (491)
T ss_pred cEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhh
Confidence 3689999999999999999999999999999999876532 11333 11 1222211 1
Q ss_pred ---------------hHHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHH
Q 026486 58 ---------------SLEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVL 119 (238)
Q Consensus 58 ---------------~~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~ 119 (238)
.+.++++.+++..... ......+++|++ +.||++++. +|+++|+||||+ ||+.++..++
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~~LSgGq~qrv~la~al~~--~p~illLDEPt~gLD~~~~~~~~ 431 (491)
T PRK10982 355 YKNKVGLLDNSRMKSDTQWVIDSMRVKTPGH-RTQIGSLSGGNQQKVIIGRWLLT--QPEILMLDEPTRGIDVGAKFEIY 431 (491)
T ss_pred hcccccccCcHHHHHHHHHHHHhcCccCCCc-ccccccCCcHHHHHHHHHHHHhc--CCCEEEEcCCCcccChhHHHHHH
Confidence 1355677777752211 112235666654 899999999 999999999999 9999999999
Q ss_pred HHHHHHHHhCCCeEEEEEecccccccchhHHHhhhHHH
Q 026486 120 RNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMAS 157 (238)
Q Consensus 120 ~~ll~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~ 157 (238)
++++++.++|.+++++ ||...+...+++.++..
T Consensus 432 -~~l~~l~~~~~tvi~v----sHd~~~~~~~~d~v~~l 464 (491)
T PRK10982 432 -QLIAELAKKDKGIIII----SSEMPELLGITDRILVM 464 (491)
T ss_pred -HHHHHHHHCCCEEEEE----CCChHHHHhhCCEEEEE
Confidence 8999998788899888 58888888887765544
No 242
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.87 E-value=1.9e-22 Score=175.10 Aligned_cols=146 Identities=21% Similarity=0.262 Sum_probs=103.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCc-----CCCceEEEeeecCCC---------CCCCC-CCC-----CChhhhhh-----
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPAA---------ENFDY-PVA-----MDIRELIS----- 58 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~-----~~~G~i~i~~~d~~~---------~~~~~-~~~-----~~i~~~i~----- 58 (238)
+++|+||||||||||+++|+|+++ |++|+|.++|.++.. ..++| ++. .++++++.
T Consensus 48 ~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~ 127 (267)
T PRK14237 48 ITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNPFAKSIYENITFALER 127 (267)
T ss_pred EEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCccccccHHHHHHhHHHh
Confidence 689999999999999999999986 579999999976521 22344 221 35555553
Q ss_pred ------------HHHHHHHcCCCCC--CchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHH
Q 026486 59 ------------LEDVMEELGLGPN--GGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (238)
Q Consensus 59 ------------~~~~l~~~~l~~~--~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ 121 (238)
+.++++.+++.+. .........++++++ ++||++++. +|+++|+|||++ ||+.++..+. +
T Consensus 128 ~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~~--~p~lllLDEPt~~LD~~~~~~l~-~ 204 (267)
T PRK14237 128 AGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAV--KPDILLMDEPASALDPISTMQLE-E 204 (267)
T ss_pred cCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-H
Confidence 2234556666321 000011123445443 899999999 999999999999 9999999999 8
Q ss_pred HHHHHHhCCCeEEEEEecccccccchhHHHhhhHHH
Q 026486 122 FVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMAS 157 (238)
Q Consensus 122 ll~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~ 157 (238)
+++++.+ +.+++++ +|...+...+++.+++.
T Consensus 205 ~l~~~~~-~~tiii~----tH~~~~~~~~~d~i~~l 235 (267)
T PRK14237 205 TMFELKK-NYTIIIV----THNMQQAARASDYTAFF 235 (267)
T ss_pred HHHHHhc-CCEEEEE----ecCHHHHHHhcCEEEEE
Confidence 8998854 6777777 48777666776654433
No 243
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=3.3e-22 Score=171.73 Aligned_cols=147 Identities=17% Similarity=0.244 Sum_probs=102.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcC-----CCceEEEeeecCCC---------CCCCC-CC-----CCChhhhhh----
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELIS---- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~-----~~G~i~i~~~d~~~---------~~~~~-~~-----~~~i~~~i~---- 58 (238)
-+++|+||||||||||+++|+|+++| ++|+|.++|.++.. ..++| ++ ..++++++.
T Consensus 30 e~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~ 109 (250)
T PRK14262 30 QITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPR 109 (250)
T ss_pred CEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCccCcccHHHHHHHHHH
Confidence 36899999999999999999999874 89999999976531 22333 22 135555543
Q ss_pred -------------HHHHHHHcCCCCCC-c-hhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHH
Q 026486 59 -------------LEDVMEELGLGPNG-G-LIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (238)
Q Consensus 59 -------------~~~~l~~~~l~~~~-~-~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~ 120 (238)
+.++++.+++.+.- . .......++++++ ++||++++. +|+++++|||++ ||+.++..+.
T Consensus 110 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~--~p~llllDEP~~~LD~~~~~~l~- 186 (250)
T PRK14262 110 IHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAV--EPEVILLDEPTSALDPIATQRIE- 186 (250)
T ss_pred HcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhC--CCCEEEEeCCccccCHHHHHHHH-
Confidence 23345556664310 0 0111233444443 899999999 999999999999 9999999998
Q ss_pred HHHHHHHhCCCeEEEEEecccccccchhHHHhhhHHH
Q 026486 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMAS 157 (238)
Q Consensus 121 ~ll~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~ 157 (238)
++++++.+ +.+++++ +|...+...+++.+++.
T Consensus 187 ~~l~~~~~-~~tili~----sH~~~~~~~~~d~i~~l 218 (250)
T PRK14262 187 KLLEELSE-NYTIVIV----THNIGQAIRIADYIAFM 218 (250)
T ss_pred HHHHHHhc-CcEEEEE----eCCHHHHHHhCCEEEEE
Confidence 98988865 6777777 47777666666655443
No 244
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=2.2e-22 Score=171.23 Aligned_cols=137 Identities=15% Similarity=0.173 Sum_probs=94.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-------CCCCC-CC-----CCChhhhhh----------H
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------L 59 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~-----~~~i~~~i~----------~ 59 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| ++ ..++++++. +
T Consensus 28 e~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~ 107 (236)
T cd03253 28 KKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEV 107 (236)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEECCCChhhcchHHHHHhhcCCCCCHHHH
Confidence 3689999999999999999999999999999999876531 12233 11 235555543 1
Q ss_pred HHHHHHcCCCCC------C---chhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 026486 60 EDVMEELGLGPN------G---GLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (238)
Q Consensus 60 ~~~l~~~~l~~~------~---~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~ 127 (238)
.+.++..++... + -.......++++++ ++||++++. +|+++|+|||++ ||+.++..+. +++.+++
T Consensus 108 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~--~p~llllDEP~~~LD~~~~~~l~-~~l~~~~ 184 (236)
T cd03253 108 IEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILK--NPPILLLDEATSALDTHTEREIQ-AALRDVS 184 (236)
T ss_pred HHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHhc
Confidence 222222232110 0 00000123444443 899999999 999999999999 9999999999 8888886
Q ss_pred hCCCeEEEEEecccccccch
Q 026486 128 SRNFNVCAVYLLDSQFITDV 147 (238)
Q Consensus 128 ~~~~tvi~v~l~d~~~~~d~ 147 (238)
+ |.+++++ +|.....
T Consensus 185 ~-~~tiii~----sh~~~~~ 199 (236)
T cd03253 185 K-GRTTIVI----AHRLSTI 199 (236)
T ss_pred C-CCEEEEE----cCCHHHH
Confidence 6 8888777 4666544
No 245
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=2.1e-22 Score=174.87 Aligned_cols=146 Identities=17% Similarity=0.251 Sum_probs=101.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCc-----CCCceEEEeeecCCC---------CCCCC-CCC-----CChhhhhh----
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPAA---------ENFDY-PVA-----MDIRELIS---- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~-----~~~G~i~i~~~d~~~---------~~~~~-~~~-----~~i~~~i~---- 58 (238)
-+++|+||||||||||+++|+|+.+ |++|+|.++|.++.. ..++| +++ .++.+++.
T Consensus 48 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~ 127 (268)
T PRK14248 48 AVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPKSIYNNITHALK 127 (268)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEEecCCccCcccHHHHHHHHHH
Confidence 3689999999999999999999864 689999999876531 12334 221 24555443
Q ss_pred -------------HHHHHHHcCCCCC--CchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHH
Q 026486 59 -------------LEDVMEELGLGPN--GGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (238)
Q Consensus 59 -------------~~~~l~~~~l~~~--~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~ 120 (238)
+.++++.+++... .........++++++ ++||++++. +|+++|+||||+ ||+.++..+.
T Consensus 128 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~~--~p~lllLDEPt~~LD~~~~~~l~- 204 (268)
T PRK14248 128 YAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAM--KPAVLLLDEPASALDPISNAKIE- 204 (268)
T ss_pred hcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHhC--CCCEEEEcCCCcccCHHHHHHHH-
Confidence 2334555555321 000111233555543 899999999 999999999999 9999999998
Q ss_pred HHHHHHHhCCCeEEEEEecccccccchhHHHhhhHH
Q 026486 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMA 156 (238)
Q Consensus 121 ~ll~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~ 156 (238)
++++++++ +.+++++ +|.......+++.+++
T Consensus 205 ~~l~~~~~-~~tiii~----tH~~~~~~~~~d~v~~ 235 (268)
T PRK14248 205 ELITELKE-EYSIIIV----THNMQQALRVSDRTAF 235 (268)
T ss_pred HHHHHHhc-CCEEEEE----EeCHHHHHHhCCEEEE
Confidence 99999865 5777766 4777766666665443
No 246
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=2.2e-22 Score=172.95 Aligned_cols=148 Identities=18% Similarity=0.230 Sum_probs=102.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCC-----CceEEEeeecCCC---------CCCCC-CCC-----CChhhhhh----
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETV-----RRTMHIVNLDPAA---------ENFDY-PVA-----MDIRELIS---- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~-----~G~i~i~~~d~~~---------~~~~~-~~~-----~~i~~~i~---- 58 (238)
-+++|+||||||||||+++|+|+++|+ +|+|.++|.++.. ..++| +++ .++++++.
T Consensus 31 ~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~ 110 (251)
T PRK14249 31 QITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPR 110 (251)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCCccCcCcHHHHHhhHHH
Confidence 368999999999999999999999987 6999999876531 22333 221 24555443
Q ss_pred -------------HHHHHHHcCCCCC--CchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHH
Q 026486 59 -------------LEDVMEELGLGPN--GGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (238)
Q Consensus 59 -------------~~~~l~~~~l~~~--~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~ 120 (238)
+.++++.+++.+. .........++++++ ++||++++. +|+++|+|||++ ||+.++..+.
T Consensus 111 ~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l~- 187 (251)
T PRK14249 111 MLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAI--EPEVILMDEPCSALDPVSTMRIE- 187 (251)
T ss_pred hcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH-
Confidence 1223344554321 000011123444443 899999999 999999999999 9999999998
Q ss_pred HHHHHHHhCCCeEEEEEecccccccchhHHHhhhHHHH
Q 026486 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASL 158 (238)
Q Consensus 121 ~ll~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~ 158 (238)
++++++. ++.+++++ +|...+...+++.+++..
T Consensus 188 ~~l~~~~-~~~tiliv----sh~~~~~~~~~d~i~~l~ 220 (251)
T PRK14249 188 ELMQELK-QNYTIAIV----THNMQQAARASDWTGFLL 220 (251)
T ss_pred HHHHHHh-cCCEEEEE----eCCHHHHHhhCCEEEEEe
Confidence 8898885 57888777 588877777777554433
No 247
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=2.7e-22 Score=172.42 Aligned_cols=148 Identities=20% Similarity=0.261 Sum_probs=104.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCc-----CCCceEEEeeecCC---------CCCCCC-CCC-----CChhhhhh----
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPA---------AENFDY-PVA-----MDIRELIS---- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~-----~~~G~i~i~~~d~~---------~~~~~~-~~~-----~~i~~~i~---- 58 (238)
-+++|+||||||||||+++|+|+.+ |++|+|.++|.+.. ...++| +|+ .++.+++.
T Consensus 32 e~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~~ni~~~~~ 111 (251)
T PRK14244 32 EVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPK 111 (251)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCcccccCCHHHHHHHHHH
Confidence 3689999999999999999999986 47999999987542 112333 221 14444432
Q ss_pred --------------HHHHHHHcCCCCCC--chhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHH
Q 026486 59 --------------LEDVMEELGLGPNG--GLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVL 119 (238)
Q Consensus 59 --------------~~~~l~~~~l~~~~--~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~ 119 (238)
+.++++.+++.+.- ........++++++ ++||++++. +|+++|+||||+ ||+.++..+.
T Consensus 112 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~ 189 (251)
T PRK14244 112 LHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAV--KPTMLLMDEPCSALDPVATNVIE 189 (251)
T ss_pred hcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH
Confidence 23557777875410 00111234555543 899999999 999999999999 9999999998
Q ss_pred HHHHHHHHhCCCeEEEEEecccccccchhHHHhhhHHHH
Q 026486 120 RNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASL 158 (238)
Q Consensus 120 ~~ll~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~ 158 (238)
++++++++ +.+++++ +|...+...+++.+++..
T Consensus 190 -~~l~~~~~-~~tiiii----sH~~~~~~~~~d~i~~l~ 222 (251)
T PRK14244 190 -NLIQELKK-NFTIIVV----THSMKQAKKVSDRVAFFQ 222 (251)
T ss_pred -HHHHHHhc-CCeEEEE----eCCHHHHHhhcCEEEEEE
Confidence 88888854 7888777 487776666666544433
No 248
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.87 E-value=8.2e-22 Score=170.26 Aligned_cols=144 Identities=17% Similarity=0.218 Sum_probs=104.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEE-----------EeeecCCC-------C--CCCC-CCCC-----C----h
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMH-----------IVNLDPAA-------E--NFDY-PVAM-----D----I 53 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~-----------i~~~d~~~-------~--~~~~-~~~~-----~----i 53 (238)
+++|+||||||||||+++|+|+++|++|+|. ++|.+... . .+.| ++.. + +
T Consensus 28 ~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~i 107 (255)
T cd03236 28 VLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIVKPQYVDLIPKAVKGKV 107 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHhhhcccceeeecchhccCchHHHHHH
Confidence 6899999999999999999999999999996 66665421 0 1112 1111 1 1
Q ss_pred hhhh-------hHHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHH
Q 026486 54 RELI-------SLEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV 123 (238)
Q Consensus 54 ~~~i-------~~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll 123 (238)
.+++ .+.++++.+|+.+..... ...++++++ +.+|++++. +|+++++|||++ ||+.++..+. +++
T Consensus 108 ~~~l~~~~~~~~~~~~l~~~gl~~~~~~~--~~~LS~G~~qrv~laral~~--~p~illlDEPts~LD~~~~~~l~-~~l 182 (255)
T cd03236 108 GELLKKKDERGKLDELVDQLELRHVLDRN--IDQLSGGELQRVAIAAALAR--DADFYFFDEPSSYLDIKQRLNAA-RLI 182 (255)
T ss_pred HHHhchhHHHHHHHHHHHHcCCchhhcCC--hhhCCHHHHHHHHHHHHHHh--CCCEEEEECCCCCCCHHHHHHHH-HHH
Confidence 1111 267788899987532211 234555543 899999999 999999999999 9999999999 999
Q ss_pred HHHHhCCCeEEEEEecccccccchhHHHhhhHH
Q 026486 124 DHLKSRNFNVCAVYLLDSQFITDVTKFISGCMA 156 (238)
Q Consensus 124 ~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~ 156 (238)
+++++++.+++++ +|.......+++.+++
T Consensus 183 ~~l~~~~~tIIii----SHd~~~~~~~ad~i~~ 211 (255)
T cd03236 183 RELAEDDNYVLVV----EHDLAVLDYLSDYIHC 211 (255)
T ss_pred HHHHhcCCEEEEE----ECCHHHHHHhCCEEEE
Confidence 9987778888877 4777666666665443
No 249
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.87 E-value=4.3e-22 Score=167.54 Aligned_cols=142 Identities=9% Similarity=-0.099 Sum_probs=96.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEE-EeeecCCC-CCCCCCCCCChhhhhhH------------H-HHHHHcC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMH-IVNLDPAA-ENFDYPVAMDIRELISL------------E-DVMEELG 67 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~-i~~~d~~~-~~~~~~~~~~i~~~i~~------------~-~~l~~~~ 67 (238)
-+++|+||||||||||+++|+|+++|++|+|. +.|..... ....+++.+++++++.. . .+.+..+
T Consensus 14 e~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~~~~~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~ 93 (213)
T PRK15177 14 EHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALPLGANSFILPGLTGEENARMMASLYGLDGDEFSHFCYQLTQ 93 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceeccccccccCCcCcHHHHHHHHHHHcCCCHHHHHHHHHHHhC
Confidence 36899999999999999999999999999997 66643211 11223556677777642 1 1123334
Q ss_pred CCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEEecccccc
Q 026486 68 LGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFI 144 (238)
Q Consensus 68 l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~tvi~v~l~d~~~~ 144 (238)
++... ......++++++ +++|++++. +|+++|+|||++ +|+.++..+. +.+.+..+ +.+++++ +|.+
T Consensus 94 l~~~~--~~~~~~lS~G~~qrv~la~al~~--~p~llllDEP~~~lD~~~~~~~~-~~l~~~~~-~~~ii~v----sH~~ 163 (213)
T PRK15177 94 LEQCY--TDRVSEYSVTMKTHLAFAINLLL--PCRLYIADGKLYTGDNATQLRMQ-AALACQLQ-QKGLIVL----THNP 163 (213)
T ss_pred hhHHh--hchHhhcCHHHHHHHHHHHHHhc--CCCEEEECCCCccCCHHHHHHHH-HHHHHHhh-CCcEEEE----ECCH
Confidence 43221 112234555543 889999999 999999999998 9999999888 65543323 3466666 5888
Q ss_pred cchhHHHhhh
Q 026486 145 TDVTKFISGC 154 (238)
Q Consensus 145 ~d~~~~~~~~ 154 (238)
.....+++.+
T Consensus 164 ~~~~~~~d~i 173 (213)
T PRK15177 164 RLIKEHCHAF 173 (213)
T ss_pred HHHHHhcCee
Confidence 7666666644
No 250
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.87 E-value=9.7e-23 Score=166.65 Aligned_cols=122 Identities=15% Similarity=0.170 Sum_probs=88.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC------CCCCC-CCCCChhhhhhHHHHHHHcCCCCCCchh
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-PVAMDIRELISLEDVMEELGLGPNGGLI 75 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~------~~~~~-~~~~~i~~~i~~~~~l~~~~l~~~~~~~ 75 (238)
-+++|+||||||||||+++|+|+.+|++|+|.++|.++.. ..++| +++..+.. .++.+.+ +
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~i------~----- 96 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFD-TTLRNNL------G----- 96 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeec-ccHHHhh------c-----
Confidence 3689999999999999999999999999999999976421 22333 22221111 1222222 1
Q ss_pred hhHHhhhhhH--HHHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccch
Q 026486 76 YCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDV 147 (238)
Q Consensus 76 ~~~~~~~~~~--s~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~tvi~v~l~d~~~~~d~ 147 (238)
..+++++ ++.||++++. +|+++|+|||++ ||+.++..++ ++++++. ++.++++++ |.....
T Consensus 97 ---~~LS~G~~qrv~laral~~--~p~~lllDEP~~~LD~~~~~~l~-~~l~~~~-~~~tii~~s----h~~~~~ 160 (178)
T cd03247 97 ---RRFSGGERQRLALARILLQ--DAPIVLLDEPTVGLDPITERQLL-SLIFEVL-KDKTLIWIT----HHLTGI 160 (178)
T ss_pred ---ccCCHHHHHHHHHHHHHhc--CCCEEEEECCcccCCHHHHHHHH-HHHHHHc-CCCEEEEEe----cCHHHH
Confidence 1233433 3899999999 999999999999 9999999999 8888885 477887773 665443
No 251
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.87 E-value=2.3e-22 Score=170.14 Aligned_cols=135 Identities=16% Similarity=0.190 Sum_probs=96.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-------CCCCC-CCC-----CChhhhhh-----------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PVA-----MDIRELIS----------- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~~-----~~i~~~i~----------- 58 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| +++ .++++++.
T Consensus 41 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~ 120 (226)
T cd03248 41 EVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECV 120 (226)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHhhEEEEecccHHHhhhHHHHhccccCCCCHHHH
Confidence 3689999999999999999999999999999999876421 12333 211 23444332
Q ss_pred --------HHHHHHHc--CCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 026486 59 --------LEDVMEEL--GLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (238)
Q Consensus 59 --------~~~~l~~~--~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~ 125 (238)
+.++++.+ |+.+..... ...++++++ ++||++++. +|+++|+|||++ ||+.++..+. +++++
T Consensus 121 ~~~~~~~~~~~~l~~l~~gl~~~~~~~--~~~LSgG~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~ 195 (226)
T cd03248 121 KEAAQKAHAHSFISELASGYDTEVGEK--GSQLSGGQKQRVAIARALIR--NPQVLILDEATSALDAESEQQVQ-QALYD 195 (226)
T ss_pred HHHHHHcCcHHHHHhccccccchhhcC--CCcCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHH
Confidence 23445555 444321111 234555543 899999999 999999999999 9999999999 88888
Q ss_pred HHhCCCeEEEEEecccccccch
Q 026486 126 LKSRNFNVCAVYLLDSQFITDV 147 (238)
Q Consensus 126 l~~~~~tvi~v~l~d~~~~~d~ 147 (238)
+++ +.+++++ +|.....
T Consensus 196 ~~~-~~tii~~----sh~~~~~ 212 (226)
T cd03248 196 WPE-RRTVLVI----AHRLSTV 212 (226)
T ss_pred HcC-CCEEEEE----ECCHHHH
Confidence 865 5777777 3666544
No 252
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=3.2e-22 Score=173.09 Aligned_cols=150 Identities=17% Similarity=0.235 Sum_probs=106.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCC-----CceEEEeeecCCC---------CCCCC-CCC-----CChhhhhh----
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETV-----RRTMHIVNLDPAA---------ENFDY-PVA-----MDIRELIS---- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~-----~G~i~i~~~d~~~---------~~~~~-~~~-----~~i~~~i~---- 58 (238)
-+++|+||||||||||+++|+|+++|+ +|+|.++|.++.. ..++| +++ .++.+++.
T Consensus 34 e~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~ 113 (261)
T PRK14258 34 KVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVK 113 (261)
T ss_pred cEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEecCCccCcccHHHHHHHHHH
Confidence 478999999999999999999999985 7999999876421 12222 221 35555442
Q ss_pred -------------HHHHHHHcCCCCC--CchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHH
Q 026486 59 -------------LEDVMEELGLGPN--GGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (238)
Q Consensus 59 -------------~~~~l~~~~l~~~--~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~ 120 (238)
+.++++.+++... .........++++++ ++||++++. +|+++|+|||++ ||+.++..+.
T Consensus 114 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~--~p~vllLDEP~~~LD~~~~~~l~- 190 (261)
T PRK14258 114 IVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAV--KPKVLLMDEPCFGLDPIASMKVE- 190 (261)
T ss_pred hcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH-
Confidence 2345556666321 000111234555543 899999999 999999999999 9999999999
Q ss_pred HHHHHHHh-CCCeEEEEEecccccccchhHHHhhhHHHHH
Q 026486 121 NFVDHLKS-RNFNVCAVYLLDSQFITDVTKFISGCMASLS 159 (238)
Q Consensus 121 ~ll~~l~~-~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~ 159 (238)
++++++++ .+.++|++ +|...+...+++.+++...
T Consensus 191 ~~l~~l~~~~~~tiiiv----sH~~~~i~~~~d~i~~l~~ 226 (261)
T PRK14258 191 SLIQSLRLRSELTMVIV----SHNLHQVSRLSDFTAFFKG 226 (261)
T ss_pred HHHHHHHHhCCCEEEEE----ECCHHHHHHhcCEEEEEcc
Confidence 88888864 47888877 4888877777776655443
No 253
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.87 E-value=1.9e-22 Score=190.13 Aligned_cols=148 Identities=13% Similarity=0.055 Sum_probs=106.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCC--cCCCceEEEe-----------------------eecC-------C---------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHC--ETVRRTMHIV-----------------------NLDP-------A--------- 41 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l--~~~~G~i~i~-----------------------~~d~-------~--------- 41 (238)
-+++|+||||||||||+++|+|++ +|++|+|.+. |.++ .
T Consensus 27 e~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~ 106 (520)
T TIGR03269 27 EVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRR 106 (520)
T ss_pred CEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccccccccccccccccchhhhccCHHHHHH
Confidence 368999999999999999999997 7999999986 2111 0
Q ss_pred -CCCCCC-C-------CCCChhhhhh----------------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHh
Q 026486 42 -AENFDY-P-------VAMDIRELIS----------------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELD 94 (238)
Q Consensus 42 -~~~~~~-~-------~~~~i~~~i~----------------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~ 94 (238)
...++| + +..++++++. +.++++.+|+...... ....++++++ ++||++++
T Consensus 107 ~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~--~~~~LSgGq~qrv~iA~al~ 184 (520)
T TIGR03269 107 IRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITH--IARDLSGGEKQRVVLARQLA 184 (520)
T ss_pred hhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhc--CcccCCHHHHHHHHHHHHHh
Confidence 011232 1 2235555542 4567888888653221 1245666654 99999999
Q ss_pred ccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CCCeEEEEEecccccccchhHHHhhhHHHHH
Q 026486 95 NYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNVCAVYLLDSQFITDVTKFISGCMASLS 159 (238)
Q Consensus 95 ~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~ 159 (238)
. +|+++||||||+ ||+.++..++ ++++++.+ .|.++|+|+ |.......+++.++....
T Consensus 185 ~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~l~~~~g~tviivt----Hd~~~~~~~~d~i~~l~~ 244 (520)
T TIGR03269 185 K--EPFLFLADEPTGTLDPQTAKLVH-NALEEAVKASGISMVLTS----HWPEVIEDLSDKAIWLEN 244 (520)
T ss_pred c--CCCEEEeeCCcccCCHHHHHHHH-HHHHHHHHhcCcEEEEEe----CCHHHHHHhcCEEEEEeC
Confidence 9 999999999999 9999999999 99999865 588888873 666666666665544433
No 254
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.87 E-value=1.4e-22 Score=176.45 Aligned_cols=147 Identities=18% Similarity=0.243 Sum_probs=100.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCc-----CCCceEEEeeecCCC---------CCCCC-CCC-----CChhhhhhH---
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPAA---------ENFDY-PVA-----MDIRELISL--- 59 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~-----~~~G~i~i~~~d~~~---------~~~~~-~~~-----~~i~~~i~~--- 59 (238)
-+++|+|+||||||||+++|+|+++ |++|+|.++|.++.. ..++| +++ .++++++..
T Consensus 51 e~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~ 130 (271)
T PRK14238 51 EVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPNPFPKSIYDNVTYGPK 130 (271)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEecCCccccccHHHHHHHHHH
Confidence 3689999999999999999999987 699999999976521 12333 222 255555531
Q ss_pred --------------HHHHHHcCCCCC-C-chhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHH
Q 026486 60 --------------EDVMEELGLGPN-G-GLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (238)
Q Consensus 60 --------------~~~l~~~~l~~~-~-~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~ 120 (238)
.++++.+++... . ........++++.+ ++||++++. +|+++|+|||++ ||+.++..+.
T Consensus 131 ~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~~--~p~lllLDEPt~~LD~~~~~~l~- 207 (271)
T PRK14238 131 IHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAI--EPDVILMDEPTSALDPISTLKVE- 207 (271)
T ss_pred hcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCCCcCCHHHHHHHH-
Confidence 122223322100 0 00011123444443 899999999 999999999999 9999999999
Q ss_pred HHHHHHHhCCCeEEEEEecccccccchhHHHhhhHHH
Q 026486 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMAS 157 (238)
Q Consensus 121 ~ll~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~ 157 (238)
++++++.+ +.+++++ +|.......+++.+++.
T Consensus 208 ~~l~~~~~-~~tiiiv----sH~~~~i~~~~d~i~~l 239 (271)
T PRK14238 208 ELVQELKK-DYSIIIV----THNMQQAARISDKTAFF 239 (271)
T ss_pred HHHHHHHc-CCEEEEE----EcCHHHHHHhCCEEEEE
Confidence 88998865 6777777 48877767776654433
No 255
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.87 E-value=2.1e-22 Score=172.19 Aligned_cols=145 Identities=17% Similarity=0.150 Sum_probs=116.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCCCCCCCCCCCChhhhh-hHHHHHHHcCCCCCCchhhhHHhh
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELI-SLEDVMEELGLGPNGGLIYCMEHL 81 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~~~~~~i~~~i-~~~~~l~~~~l~~~~~~~~~~~~~ 81 (238)
-+++|+|+|||||||+-|++.|+++|++|+|++.|.|...-. ..+.. .+.++++.+|+.+.-..++.. .+
T Consensus 40 e~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~--------~~~~~~~v~elL~~Vgl~~~~~~ryPh-el 110 (268)
T COG4608 40 ETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS--------KEERRERVLELLEKVGLPEEFLYRYPH-EL 110 (268)
T ss_pred CEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc--------hhHHHHHHHHHHHHhCCCHHHhhcCCc-cc
Confidence 368999999999999999999999999999999998854322 11222 388999999988766566663 56
Q ss_pred hhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CCCeEEEEEecccccccchhHHHhhhHHH
Q 026486 82 EDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNVCAVYLLDSQFITDVTKFISGCMAS 157 (238)
Q Consensus 82 ~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~~tvi~v~l~d~~~~~d~~~~~~~~l~~ 157 (238)
+++++ +.||||++. +|+++++|||++ ||.-.+.++. +++.++++ .|.+.+++ +|+++-...+++++.++
T Consensus 111 SGGQrQRi~IARALal--~P~liV~DEpvSaLDvSiqaqIl-nLL~dlq~~~~lt~lFI----sHDL~vv~~isdri~VM 183 (268)
T COG4608 111 SGGQRQRIGIARALAL--NPKLIVADEPVSALDVSVQAQIL-NLLKDLQEELGLTYLFI----SHDLSVVRYISDRIAVM 183 (268)
T ss_pred CchhhhhHHHHHHHhh--CCcEEEecCchhhcchhHHHHHH-HHHHHHHHHhCCeEEEE----EEEHHhhhhhcccEEEE
Confidence 66654 899999999 999999999999 9999999999 99999986 59999888 48777666666666555
Q ss_pred HHHHHh
Q 026486 158 LSAMVQ 163 (238)
Q Consensus 158 ~~~~~~ 163 (238)
..|.+.
T Consensus 184 y~G~iV 189 (268)
T COG4608 184 YLGKIV 189 (268)
T ss_pred ecCcee
Confidence 444443
No 256
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.87 E-value=1.6e-22 Score=195.37 Aligned_cols=152 Identities=19% Similarity=0.220 Sum_probs=111.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-------CCCCC-CC-----CCChhhhhh-------HHHHH
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS-------LEDVM 63 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~-----~~~i~~~i~-------~~~~l 63 (238)
.++|+|+||||||||+|.++|+++|++|+|.++|.|... +.++| +| +-+++|+++ .++++
T Consensus 501 ~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~ 580 (709)
T COG2274 501 KVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEII 580 (709)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHH
Confidence 489999999999999999999999999999999998753 44555 33 336888876 22222
Q ss_pred HHc---CC---------------CCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHH
Q 026486 64 EEL---GL---------------GPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (238)
Q Consensus 64 ~~~---~l---------------~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~l 122 (238)
+.. |. ++.| ..+++|++ .+|||++.. +|++|||||||+ ||+.+.+.+. +-
T Consensus 581 ~A~~~ag~~~fI~~lP~gy~t~v~E~G------~~LSGGQrQrlalARaLl~--~P~ILlLDEaTSaLD~~sE~~I~-~~ 651 (709)
T COG2274 581 EAAQLAGAHEFIENLPMGYDTPVGEGG------ANLSGGQRQRLALARALLS--KPKILLLDEATSALDPETEAIIL-QN 651 (709)
T ss_pred HHHHHhCcHHHHHhcccccccccccCC------CCCCHHHHHHHHHHHHhcc--CCCEEEEeCcccccCHhHHHHHH-HH
Confidence 222 21 1122 12556554 899999999 999999999999 9999999998 76
Q ss_pred HHHHHhCCCeEEEEEecccccccchhHHHhhhHHHHHHHHhhcCCeee
Q 026486 123 VDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVN 170 (238)
Q Consensus 123 l~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~~~p~~~ 170 (238)
+.++. .|+|+|+| +|..+- -+.++++++...|++..+.+|-+
T Consensus 652 L~~~~-~~~T~I~I----aHRl~t-i~~adrIiVl~~Gkiv~~gs~~e 693 (709)
T COG2274 652 LLQIL-QGRTVIII----AHRLST-IRSADRIIVLDQGKIVEQGSHEE 693 (709)
T ss_pred HHHHh-cCCeEEEE----EccchH-hhhccEEEEccCCceeccCCHHH
Confidence 77764 46888888 476653 34466677777777766666633
No 257
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.87 E-value=4.1e-22 Score=171.08 Aligned_cols=146 Identities=17% Similarity=0.277 Sum_probs=100.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcC-----CCceEEEeeecCCC---------CCCCC-CCC-----CChhhhhh-----
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA---------ENFDY-PVA-----MDIRELIS----- 58 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~-----~~G~i~i~~~d~~~---------~~~~~-~~~-----~~i~~~i~----- 58 (238)
+++|+||||||||||+++|+|++++ ++|+|.++|.++.. ..++| +++ .++.+++.
T Consensus 31 ~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~ 110 (250)
T PRK14240 31 VTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRT 110 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCccCcccHHHHHHHHHHh
Confidence 6899999999999999999999763 68999999976531 12333 221 35555543
Q ss_pred ------------HHHHHHHcCCCCC--CchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHH
Q 026486 59 ------------LEDVMEELGLGPN--GGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (238)
Q Consensus 59 ------------~~~~l~~~~l~~~--~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ 121 (238)
+.++++.+++.+. .........++++++ ++||++++. +|+++++|||++ ||+.++..+. +
T Consensus 111 ~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEP~~~LD~~~~~~l~-~ 187 (250)
T PRK14240 111 HGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAV--EPEVLLMDEPTSALDPISTLKIE-E 187 (250)
T ss_pred cCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH-H
Confidence 2223444554210 000011123445443 899999999 999999999999 9999999998 8
Q ss_pred HHHHHHhCCCeEEEEEecccccccchhHHHhhhHHH
Q 026486 122 FVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMAS 157 (238)
Q Consensus 122 ll~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~ 157 (238)
+++++++ +.+++++ +|...+...+++.+++.
T Consensus 188 ~l~~~~~-~~tiii~----sH~~~~~~~~~d~v~~l 218 (250)
T PRK14240 188 LIQELKK-DYTIVIV----THNMQQASRISDKTAFF 218 (250)
T ss_pred HHHHHhc-CCeEEEE----EeCHHHHHhhCCEEEEE
Confidence 8998854 7788777 47777666666644433
No 258
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.87 E-value=3.7e-22 Score=168.05 Aligned_cols=138 Identities=15% Similarity=0.239 Sum_probs=96.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-----------CCCCC-CC-----CCChhhhhh--------
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-PV-----AMDIRELIS-------- 58 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-----------~~~~~-~~-----~~~i~~~i~-------- 58 (238)
+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| ++ ..++++++.
T Consensus 29 ~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~ 108 (218)
T cd03290 29 LTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLLNATVEENITFGSPFNKQ 108 (218)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceEEEEcCCCccccccHHHHHhhcCcCCHH
Confidence 689999999999999999999999999999998865421 22333 22 235666553
Q ss_pred -HHHHHHHcCCCCCCc---------hhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHH-HHH
Q 026486 59 -LEDVMEELGLGPNGG---------LIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN-FVD 124 (238)
Q Consensus 59 -~~~~l~~~~l~~~~~---------~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~-ll~ 124 (238)
..++++.+++.+.-. .......++++++ ++||++++. +|+++|+||||+ ||+.++..+++. +++
T Consensus 109 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~--~p~illlDEPt~~LD~~~~~~l~~~~ll~ 186 (218)
T cd03290 109 RYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQ--NTNIVFLDDPFSALDIHLSDHLMQEGILK 186 (218)
T ss_pred HHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhh--CCCEEEEeCCccccCHHHHHHHHHHHHHH
Confidence 234455555432100 0001123445443 999999999 999999999999 999999999832 777
Q ss_pred HHHhCCCeEEEEEecccccccch
Q 026486 125 HLKSRNFNVCAVYLLDSQFITDV 147 (238)
Q Consensus 125 ~l~~~~~tvi~v~l~d~~~~~d~ 147 (238)
.+++.|.++|+++ |.....
T Consensus 187 ~~~~~~~tii~~s----H~~~~~ 205 (218)
T cd03290 187 FLQDDKRTLVLVT----HKLQYL 205 (218)
T ss_pred HHhcCCCEEEEEe----CChHHH
Confidence 7766688887773 666543
No 259
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.87 E-value=4.8e-22 Score=166.11 Aligned_cols=131 Identities=20% Similarity=0.235 Sum_probs=94.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-------CCCCC-CC-----CCChhhhhh------HHHHH
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS------LEDVM 63 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~-----~~~i~~~i~------~~~~l 63 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..++| ++ ..++++++. .+++.
T Consensus 35 ~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~ 114 (207)
T cd03369 35 EKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIY 114 (207)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEEEEecCCcccCccHHHHhcccCCCCHHHHH
Confidence 3689999999999999999999999999999999976421 22333 22 125555542 12233
Q ss_pred HHcCCCCCCchhhhHHhhhhhH--HHHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEEecc
Q 026486 64 EELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLD 140 (238)
Q Consensus 64 ~~~~l~~~~~~~~~~~~~~~~~--s~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~tvi~v~l~d 140 (238)
+.+++... ...++++. +++||++++. +|+++|+|||++ ||+.++..++ ++++++. ++.++|++
T Consensus 115 ~~l~~~~~------~~~LS~G~~qrv~laral~~--~p~llllDEP~~~LD~~~~~~l~-~~l~~~~-~~~tiii~---- 180 (207)
T cd03369 115 GALRVSEG------GLNLSQGQRQLLCLARALLK--RPRVLVLDEATASIDYATDALIQ-KTIREEF-TNSTILTI---- 180 (207)
T ss_pred HHhhccCC------CCcCCHHHHHHHHHHHHHhh--CCCEEEEeCCcccCCHHHHHHHH-HHHHHhc-CCCEEEEE----
Confidence 33333222 12344443 3899999999 999999999999 9999999988 8888874 47888777
Q ss_pred cccccch
Q 026486 141 SQFITDV 147 (238)
Q Consensus 141 ~~~~~d~ 147 (238)
+|.....
T Consensus 181 th~~~~~ 187 (207)
T cd03369 181 AHRLRTI 187 (207)
T ss_pred eCCHHHH
Confidence 3666543
No 260
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.87 E-value=7.1e-22 Score=158.37 Aligned_cols=129 Identities=19% Similarity=0.237 Sum_probs=101.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-----------CCCCC-------CCCCChhhhhh-------
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-------PVAMDIRELIS------- 58 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-----------~~~~~-------~~~~~i~~~i~------- 58 (238)
.++|+||+|||||||+..++|+-.|++|+|.+.|.+... .+++| -|+++-.|++.
T Consensus 38 ~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~g 117 (228)
T COG4181 38 TVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRG 117 (228)
T ss_pred eEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccchhhhhccchhhhcC
Confidence 589999999999999999999999999999999987632 33333 34555555553
Q ss_pred ---------HHHHHHHcCCCCCCchhhhHHhhhh--hHHHHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 026486 59 ---------LEDVMEELGLGPNGGLIYCMEHLED--NLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (238)
Q Consensus 59 ---------~~~~l~~~~l~~~~~~~~~~~~~~~--~~s~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l 126 (238)
..+.++.+||+........ .+++ +++++|||+++. .|++++.||||. ||-.+-+++. +++-.+
T Consensus 118 e~~~~~~~~A~~lL~~vGLg~Rl~HyP~--qLSGGEQQRVAiARAfa~--~P~vLfADEPTGNLD~~Tg~~ia-DLlF~l 192 (228)
T COG4181 118 ESSADSRAGAKALLEAVGLGKRLTHYPA--QLSGGEQQRVALARAFAG--RPDVLFADEPTGNLDRATGDKIA-DLLFAL 192 (228)
T ss_pred CccccHHHHHHHHHHHhCcccccccCcc--ccCchHHHHHHHHHHhcC--CCCEEeccCCCCCcchhHHHHHH-HHHHHH
Confidence 7788999999865322111 2332 244999999999 999999999997 9999999999 888888
Q ss_pred Hh-CCCeEEEEE
Q 026486 127 KS-RNFNVCAVY 137 (238)
Q Consensus 127 ~~-~~~tvi~v~ 137 (238)
++ .|.|+++|+
T Consensus 193 nre~G~TlVlVT 204 (228)
T COG4181 193 NRERGTTLVLVT 204 (228)
T ss_pred hhhcCceEEEEe
Confidence 75 588998884
No 261
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=4.3e-22 Score=174.65 Aligned_cols=148 Identities=17% Similarity=0.253 Sum_probs=103.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCc-----CCCceEEEeeecCCC---------CCCCC-CCC-----CChhhhhh----
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPAA---------ENFDY-PVA-----MDIRELIS---- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~-----~~~G~i~i~~~d~~~---------~~~~~-~~~-----~~i~~~i~---- 58 (238)
-+++|+||||||||||+++|+|+.+ |++|+|.++|.++.. ..++| +++ .++.+++.
T Consensus 66 e~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~ 145 (286)
T PRK14275 66 YVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNPFPKSIFDNIAYGPR 145 (286)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCCCCCccCHHHHHHhHHH
Confidence 3689999999999999999999864 499999999876421 22344 221 25555543
Q ss_pred -------------HHHHHHHcCCCCC--CchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHH
Q 026486 59 -------------LEDVMEELGLGPN--GGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (238)
Q Consensus 59 -------------~~~~l~~~~l~~~--~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~ 120 (238)
+.++++.+++... .........++++++ +.||++++. +|+++|+|||++ ||+.++..+.
T Consensus 146 ~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~--~p~lllLDEPt~gLD~~~~~~l~- 222 (286)
T PRK14275 146 LHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAV--EPEILLLDEPTSALDPKATAKIE- 222 (286)
T ss_pred hcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH-
Confidence 2234555565310 001111234555543 899999999 999999999999 9999999999
Q ss_pred HHHHHHHhCCCeEEEEEecccccccchhHHHhhhHHHH
Q 026486 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASL 158 (238)
Q Consensus 121 ~ll~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~ 158 (238)
++++++++ +.++|++ +|.......+++.+++..
T Consensus 223 ~~L~~~~~-~~tvIiv----sH~~~~~~~~~d~i~~L~ 255 (286)
T PRK14275 223 DLIQELRG-SYTIMIV----THNMQQASRVSDYTMFFY 255 (286)
T ss_pred HHHHHHhc-CCeEEEE----eCCHHHHHHhCCEEEEEE
Confidence 88988864 5777777 588877777777554433
No 262
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=6.9e-22 Score=169.83 Aligned_cols=148 Identities=16% Similarity=0.203 Sum_probs=101.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCC-----CceEEEeeecCCC---------CCCCC-C------CCCChhhhhhH---
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETV-----RRTMHIVNLDPAA---------ENFDY-P------VAMDIRELISL--- 59 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~-----~G~i~i~~~d~~~---------~~~~~-~------~~~~i~~~i~~--- 59 (238)
+++|+||||||||||+++|+|+++|+ +|+|.++|.++.. ..++| + +..++.+++..
T Consensus 32 ~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~ 111 (252)
T PRK14272 32 VNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLK 111 (252)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHH
Confidence 68999999999999999999999874 7999999976531 12333 2 23456665531
Q ss_pred --------------HHHHHHcCCCCC--CchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHH
Q 026486 60 --------------EDVMEELGLGPN--GGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (238)
Q Consensus 60 --------------~~~l~~~~l~~~--~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~ 120 (238)
.++++.+++... .........++++++ ++||++++. +|+++|+|||++ ||+.++..+.
T Consensus 112 ~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEP~~~LD~~~~~~l~- 188 (252)
T PRK14272 112 LAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAV--EPEILLMDEPTSALDPASTARIE- 188 (252)
T ss_pred hcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH-
Confidence 111223333210 000111234555543 899999999 999999999999 9999999999
Q ss_pred HHHHHHHhCCCeEEEEEecccccccchhHHHhhhHHHHH
Q 026486 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLS 159 (238)
Q Consensus 121 ~ll~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~ 159 (238)
++++++++ +.+++++ +|.......+++.+++...
T Consensus 189 ~~l~~~~~-~~tiii~----sH~~~~~~~~~d~i~~l~~ 222 (252)
T PRK14272 189 DLMTDLKK-VTTIIIV----THNMHQAARVSDTTSFFLV 222 (252)
T ss_pred HHHHHHhc-CCeEEEE----eCCHHHHHHhCCEEEEEEC
Confidence 88998864 6777777 4877776777665544333
No 263
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.87 E-value=2.5e-22 Score=169.21 Aligned_cols=136 Identities=21% Similarity=0.232 Sum_probs=95.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-------CCCCC-CC-----CCChhhhhh---------HHH
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS---------LED 61 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~-----~~~i~~~i~---------~~~ 61 (238)
+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| ++ ..++++++. +.+
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~ 111 (221)
T cd03244 32 KVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGEYSDEELWQ 111 (221)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEEECCCCccccchHHHHhCcCCCCCHHHHHH
Confidence 689999999999999999999999999999999876421 22333 21 225565543 344
Q ss_pred HHHHcCCCCCCc-----h----hhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC
Q 026486 62 VMEELGLGPNGG-----L----IYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR 129 (238)
Q Consensus 62 ~l~~~~l~~~~~-----~----~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~ 129 (238)
.++.+++.+... . ......++++++ ++||++++. +|+++|+|||++ ||+.++..+. ++++++.+
T Consensus 112 ~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~--~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~- 187 (221)
T cd03244 112 ALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLR--KSKILVLDEATASVDPETDALIQ-KTIREAFK- 187 (221)
T ss_pred HHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhc--CCCEEEEeCccccCCHHHHHHHH-HHHHHhcC-
Confidence 555555532100 0 001123444433 899999999 999999999999 9999999998 88888854
Q ss_pred CCeEEEEEecccccccch
Q 026486 130 NFNVCAVYLLDSQFITDV 147 (238)
Q Consensus 130 ~~tvi~v~l~d~~~~~d~ 147 (238)
+.+++++ +|...+.
T Consensus 188 ~~tii~~----sh~~~~~ 201 (221)
T cd03244 188 DCTVLTI----AHRLDTI 201 (221)
T ss_pred CCEEEEE----eCCHHHH
Confidence 5677666 4665543
No 264
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=7.5e-22 Score=169.37 Aligned_cols=149 Identities=18% Similarity=0.232 Sum_probs=102.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcC-----CCceEEEeeecCCC--------CCCCC-CC-----CCChhhhhh-----
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA--------ENFDY-PV-----AMDIRELIS----- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~-----~~G~i~i~~~d~~~--------~~~~~-~~-----~~~i~~~i~----- 58 (238)
-+++|+||||||||||+++|+|+++| ++|+|.++|.++.. ..++| ++ ..++.+++.
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~ 109 (249)
T PRK14253 30 QVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPFPMSIYENVAYGLRA 109 (249)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCCcCcccHHHHHHhHHHh
Confidence 36899999999999999999999986 58999999976521 12333 22 135555443
Q ss_pred ------------HHHHHHHcCCCCCC--chhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHH
Q 026486 59 ------------LEDVMEELGLGPNG--GLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (238)
Q Consensus 59 ------------~~~~l~~~~l~~~~--~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ 121 (238)
+.++++.+++.+.. ........++++.+ +.||++++. +|+++|+|||++ ||+.++..+. +
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEP~~~LD~~~~~~l~-~ 186 (249)
T PRK14253 110 QGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAM--EPDVILMDEPTSALDPIATHKIE-E 186 (249)
T ss_pred cCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCCccCCHHHHHHHH-H
Confidence 12234445553210 00011123444433 899999999 999999999999 9999999999 8
Q ss_pred HHHHHHhCCCeEEEEEecccccccchhHHHhhhHHHHH
Q 026486 122 FVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLS 159 (238)
Q Consensus 122 ll~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~ 159 (238)
+++++++ +.+++++ +|.......+++.+++...
T Consensus 187 ~l~~~~~-~~tii~~----sh~~~~~~~~~d~i~~l~~ 219 (249)
T PRK14253 187 LMEELKK-NYTIVIV----THSMQQARRISDRTAFFLM 219 (249)
T ss_pred HHHHHhc-CCeEEEE----ecCHHHHHHhCCEEEEEEC
Confidence 9999865 5777777 4887777777775544433
No 265
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.86 E-value=1.2e-21 Score=165.07 Aligned_cols=144 Identities=18% Similarity=0.262 Sum_probs=108.3
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCCC--------CCCC---------CC------------------
Q 026486 5 QLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE--------NFDY---------PV------------------ 49 (238)
Q Consensus 5 v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~--------~~~~---------~~------------------ 49 (238)
.+|+||||||||||+++++|..+|.+|.+.+.|...... .+++ ..
T Consensus 60 W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~ 139 (257)
T COG1119 60 WAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGI 139 (257)
T ss_pred EEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhCccCHHHHhhcccccccceeeeecccccccc
Confidence 479999999999999999999999999999998765431 1121 11
Q ss_pred ---CCChhhhhhHHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHH
Q 026486 50 ---AMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV 123 (238)
Q Consensus 50 ---~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll 123 (238)
..+-.+.-.+..+++.+|+....+..++ .++.+.+ +-||||++. +|++||||||++ ||+..+..+. +.+
T Consensus 140 y~~~~~~~~~~~a~~lle~~g~~~la~r~~~--~LS~Ge~rrvLiaRALv~--~P~LLiLDEP~~GLDl~~re~ll-~~l 214 (257)
T COG1119 140 YQEDLTAEDLAAAQWLLELLGAKHLADRPFG--SLSQGEQRRVLIARALVK--DPELLILDEPAQGLDLIAREQLL-NRL 214 (257)
T ss_pred cccCCCHHHHHHHHHHHHHcchhhhccCchh--hcCHhHHHHHHHHHHHhc--CCCEEEecCccccCChHHHHHHH-HHH
Confidence 1122222237778899999876555544 3554433 899999999 999999999999 9999999999 888
Q ss_pred HHHHhC--CCeEEEEEecccccccchhHHHhhhHHH
Q 026486 124 DHLKSR--NFNVCAVYLLDSQFITDVTKFISGCMAS 157 (238)
Q Consensus 124 ~~l~~~--~~tvi~v~l~d~~~~~d~~~~~~~~l~~ 157 (238)
.++... +.++++| +|+.+|....++.+++.
T Consensus 215 ~~~~~~~~~~~ll~V----tHh~eEi~~~~th~lll 246 (257)
T COG1119 215 EELAASPGAPALLFV----THHAEEIPPCFTHRLLL 246 (257)
T ss_pred HHHhcCCCCceEEEE----EcchhhcccccceEEEe
Confidence 887653 6778888 59998887766654443
No 266
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.86 E-value=7.7e-22 Score=171.76 Aligned_cols=150 Identities=15% Similarity=0.199 Sum_probs=104.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcC-----CCceEEEeeecCCC---------CCCCC-CCC-----CChhhhhh----
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA---------ENFDY-PVA-----MDIRELIS---- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~-----~~G~i~i~~~d~~~---------~~~~~-~~~-----~~i~~~i~---- 58 (238)
-+++|+||||||||||+++|+|++++ ++|+|.++|.++.. ..++| +++ .++++++.
T Consensus 52 e~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~ 131 (272)
T PRK14236 52 RVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPKSIYENVVYGLR 131 (272)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCccCcccHHHHHHHHHH
Confidence 36899999999999999999999874 89999999977531 12333 221 25555543
Q ss_pred -------------HHHHHHHcCCCCC--CchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHH
Q 026486 59 -------------LEDVMEELGLGPN--GGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (238)
Q Consensus 59 -------------~~~~l~~~~l~~~--~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~ 120 (238)
+.++++.+++.+. .........++++++ ++||++++. +|+++|+|||++ ||+.++..+.
T Consensus 132 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~--~p~lllLDEPt~gLD~~~~~~l~- 208 (272)
T PRK14236 132 LQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAI--EPEVLLLDEPTSALDPISTLKIE- 208 (272)
T ss_pred hcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHHC--CCCEEEEeCCcccCCHHHHHHHH-
Confidence 2334555566421 000011123444443 899999999 999999999999 9999999998
Q ss_pred HHHHHHHhCCCeEEEEEecccccccchhHHHhhhHHHHHH
Q 026486 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSA 160 (238)
Q Consensus 121 ~ll~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~ 160 (238)
++++++++ +.+++++ +|...+...+++.+++...+
T Consensus 209 ~~L~~~~~-~~tiiiv----tH~~~~~~~~~d~i~~l~~G 243 (272)
T PRK14236 209 ELITELKS-KYTIVIV----THNMQQAARVSDYTAFMYMG 243 (272)
T ss_pred HHHHHHHh-CCeEEEE----eCCHHHHHhhCCEEEEEECC
Confidence 99999865 6777776 47777666666655443333
No 267
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=5.6e-22 Score=173.84 Aligned_cols=143 Identities=15% Similarity=0.259 Sum_probs=102.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCc-----CCCceEEEeeecCCC---------CCCCC-CCC-----CChhhhhh----
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPAA---------ENFDY-PVA-----MDIRELIS---- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~-----~~~G~i~i~~~d~~~---------~~~~~-~~~-----~~i~~~i~---- 58 (238)
-+++|+||||||||||+++|+|+++ |++|+|.++|.++.. ..++| +|+ .++.+++.
T Consensus 66 e~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~ 145 (285)
T PRK14254 66 QVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPKSIYDNVAYGLK 145 (285)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCcCCHHHHHHHHHH
Confidence 3689999999999999999999987 689999999876521 12333 221 25555543
Q ss_pred -----------HHHHHHHcCCCCCC--chhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHH
Q 026486 59 -----------LEDVMEELGLGPNG--GLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (238)
Q Consensus 59 -----------~~~~l~~~~l~~~~--~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~l 122 (238)
+.++++.+++.+.. ........++++++ ++||++++. +|+++|+|||++ ||+.++..+. ++
T Consensus 146 ~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~--~p~lLLLDEPts~LD~~~~~~l~-~~ 222 (285)
T PRK14254 146 IQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAP--DPEVILMDEPASALDPVATSKIE-DL 222 (285)
T ss_pred HcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCCCCCCHHHHHHHH-HH
Confidence 34566677774311 01111234555543 899999999 999999999999 9999999998 99
Q ss_pred HHHHHhCCCeEEEEEecccccccchhHHHhh
Q 026486 123 VDHLKSRNFNVCAVYLLDSQFITDVTKFISG 153 (238)
Q Consensus 123 l~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~ 153 (238)
++++++ +.++|++ +|.......+++.
T Consensus 223 L~~~~~-~~tiii~----tH~~~~i~~~~dr 248 (285)
T PRK14254 223 IEELAE-EYTVVIV----THNMQQAARISDK 248 (285)
T ss_pred HHHHhc-CCEEEEE----eCCHHHHHhhcCE
Confidence 999865 4677766 4877766666664
No 268
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.86 E-value=3.1e-22 Score=173.55 Aligned_cols=146 Identities=16% Similarity=0.213 Sum_probs=101.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCc-----CCCceEEEeeecCCC---------CCCCC-CCC-----CChhhhhh----
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPAA---------ENFDY-PVA-----MDIRELIS---- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~-----~~~G~i~i~~~d~~~---------~~~~~-~~~-----~~i~~~i~---- 58 (238)
-+++|+||||||||||+++|+|+++ |++|+|.++|.++.. ..++| +++ .++.+++.
T Consensus 37 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~ 116 (264)
T PRK14243 37 QITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFPKSIYDNIAYGAR 116 (264)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEEEEccCCccccccHHHHHHhhhh
Confidence 3689999999999999999999986 379999999976521 12333 221 25555543
Q ss_pred -----------HHHHHHHcCCCCC--CchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHH
Q 026486 59 -----------LEDVMEELGLGPN--GGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (238)
Q Consensus 59 -----------~~~~l~~~~l~~~--~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~l 122 (238)
+.++++.+++... .........++++++ ++||++++. +|+++|+|||++ ||+.++..+. ++
T Consensus 117 ~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l~-~~ 193 (264)
T PRK14243 117 INGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAV--QPEVILMDEPCSALDPISTLRIE-EL 193 (264)
T ss_pred hcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH-HH
Confidence 1223444454210 000011123445443 899999999 999999999999 9999999999 99
Q ss_pred HHHHHhCCCeEEEEEecccccccchhHHHhhhHH
Q 026486 123 VDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMA 156 (238)
Q Consensus 123 l~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~ 156 (238)
++++.+ +.++|++ +|...+...+++.+++
T Consensus 194 L~~~~~-~~tvi~v----tH~~~~~~~~~d~v~~ 222 (264)
T PRK14243 194 MHELKE-QYTIIIV----THNMQQAARVSDMTAF 222 (264)
T ss_pred HHHHhc-CCEEEEE----ecCHHHHHHhCCEEEE
Confidence 999865 5777777 5888777777775543
No 269
>PLN03211 ABC transporter G-25; Provisional
Probab=99.86 E-value=1e-21 Score=189.56 Aligned_cols=159 Identities=18% Similarity=0.215 Sum_probs=117.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCC--CceEEEeeecCCC---CCCCC-------CCCCChhhhhh------------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETV--RRTMHIVNLDPAA---ENFDY-------PVAMDIRELIS------------ 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~--~G~i~i~~~d~~~---~~~~~-------~~~~~i~~~i~------------ 58 (238)
-+++|+||||||||||+++|+|.++|. +|+|.++|.+... ..++| .+..+++|++.
T Consensus 95 e~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~ 174 (659)
T PLN03211 95 EILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLT 174 (659)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCC
Confidence 368999999999999999999999885 8999999987532 22344 23456766653
Q ss_pred -------HHHHHHHcCCCCCCchhh---hHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 026486 59 -------LEDVMEELGLGPNGGLIY---CMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (238)
Q Consensus 59 -------~~~~l~~~~l~~~~~~~~---~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~ 125 (238)
++++++.+|+.+...... ....++++++ +.||++++. +|+++++||||+ ||..++..++ +++++
T Consensus 175 ~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~--~P~iLlLDEPtsgLD~~~~~~l~-~~L~~ 251 (659)
T PLN03211 175 KQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLI--NPSLLILDEPTSGLDATAAYRLV-LTLGS 251 (659)
T ss_pred HHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHh--CCCEEEEeCCCCCcCHHHHHHHH-HHHHH
Confidence 455777888865321100 0123555543 999999999 999999999999 9999999999 99999
Q ss_pred HHhCCCeEEEEEeccccccc-chhHHHhhhHHHHHHHHhhcCCe
Q 026486 126 LKSRNFNVCAVYLLDSQFIT-DVTKFISGCMASLSAMVQLELPH 168 (238)
Q Consensus 126 l~~~~~tvi~v~l~d~~~~~-d~~~~~~~~l~~~~~~~~~~~p~ 168 (238)
++++|.|++++ +|... +....++.+++...|.+....|+
T Consensus 252 l~~~g~TvI~~----sH~~~~~i~~~~D~iilL~~G~iv~~G~~ 291 (659)
T PLN03211 252 LAQKGKTIVTS----MHQPSSRVYQMFDSVLVLSEGRCLFFGKG 291 (659)
T ss_pred HHhCCCEEEEE----ecCCCHHHHHhhceEEEecCCcEEEECCH
Confidence 98778888777 47776 45677777777666666555554
No 270
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.86 E-value=5.4e-22 Score=207.42 Aligned_cols=152 Identities=14% Similarity=0.174 Sum_probs=119.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC------CCCCC-------CCCCChhhhhh-----------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS----------- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~------~~~~~-------~~~~~i~~~i~----------- 58 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. +.++| .+.++++|++.
T Consensus 957 ei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~ 1036 (2272)
T TIGR01257 957 QITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWE 1036 (2272)
T ss_pred cEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcCCCHH
Confidence 3689999999999999999999999999999999987632 22343 23457777663
Q ss_pred -----HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCC
Q 026486 59 -----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN 130 (238)
Q Consensus 59 -----~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~ 130 (238)
++++++++|+....... ...+++|++ ++||+|++. +|+++|+||||+ ||+.+++.++ +++++++ +|
T Consensus 1037 ~~~~~v~~lL~~vgL~~~~~~~--~~~LSGGqKQRLsLArALi~--~PkVLLLDEPTSGLDp~sr~~l~-~lL~~l~-~g 1110 (2272)
T TIGR01257 1037 EAQLEMEAMLEDTGLHHKRNEE--AQDLSGGMQRKLSVAIAFVG--DAKVVVLDEPTSGVDPYSRRSIW-DLLLKYR-SG 1110 (2272)
T ss_pred HHHHHHHHHHHHcCCchhhcCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEECCCcCCCHHHHHHHH-HHHHHHh-CC
Confidence 45678888887543222 245666654 899999999 999999999999 9999999999 9999985 58
Q ss_pred CeEEEEEecccccccchhHHHhhhHHHHHHHHhh
Q 026486 131 FNVCAVYLLDSQFITDVTKFISGCMASLSAMVQL 164 (238)
Q Consensus 131 ~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~ 164 (238)
.++|++ +|++.+...++++++....|.+..
T Consensus 1111 ~TIIlt----THdmdea~~laDrI~iL~~GkL~~ 1140 (2272)
T TIGR01257 1111 RTIIMS----THHMDEADLLGDRIAIISQGRLYC 1140 (2272)
T ss_pred CEEEEE----ECCHHHHHHhCCEEEEEECCEEEE
Confidence 888777 588888888888777665555433
No 271
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.86 E-value=5.3e-22 Score=173.17 Aligned_cols=162 Identities=16% Similarity=0.212 Sum_probs=122.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCc-C----CCceEEEeeecCCC-----------CCCCC-CC--------CCChhhhh
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCE-T----VRRTMHIVNLDPAA-----------ENFDY-PV--------AMDIRELI 57 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~-~----~~G~i~i~~~d~~~-----------~~~~~-~~--------~~~i~~~i 57 (238)
-+++|+|.+||||||++++++|+++ + .+|+|.++|.|... ..+++ +| .++|.+.+
T Consensus 32 E~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi 111 (316)
T COG0444 32 EILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQI 111 (316)
T ss_pred cEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCchhhcCChhhHHHHH
Confidence 4689999999999999999999997 3 57899999986522 22333 22 23333322
Q ss_pred ------------------hHHHHHHHcCCCCCC--chhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHh
Q 026486 58 ------------------SLEDVMEELGLGPNG--GLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFT 114 (238)
Q Consensus 58 ------------------~~~~~l~~~~l~~~~--~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~ 114 (238)
.+.++++.+|+.+.. -..|+ ..+++|++ +.||.+++. +|++||.||||+ ||...
T Consensus 112 ~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YP-helSGGMrQRV~IAmala~--~P~LlIADEPTTALDvt~ 188 (316)
T COG0444 112 AEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYP-HELSGGMRQRVMIAMALAL--NPKLLIADEPTTALDVTV 188 (316)
T ss_pred HHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCC-cccCCcHHHHHHHHHHHhC--CCCEEEeCCCcchhhHHH
Confidence 155678888997642 23344 34666654 889999999 999999999998 99999
Q ss_pred HHHHHHHHHHHHHh-CCCeEEEEEecccccccchhHHHhhhHHHHHHHHhhcCCeeeee
Q 026486 115 HVPVLRNFVDHLKS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNIL 172 (238)
Q Consensus 115 ~~~~~~~ll~~l~~-~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~~~p~~~vl 172 (238)
+.+++ ++++++++ .|.++++| +|++.-++.+++.+.++..|.+.-..|.-.+|
T Consensus 189 QaqIl-~Ll~~l~~e~~~aiilI----THDl~vva~~aDri~VMYaG~iVE~g~~~~i~ 242 (316)
T COG0444 189 QAQIL-DLLKELQREKGTALILI----THDLGVVAEIADRVAVMYAGRIVEEGPVEEIF 242 (316)
T ss_pred HHHHH-HHHHHHHHhcCCEEEEE----eCCHHHHHHhcceEEEEECcEEEEeCCHHHHh
Confidence 99999 99999986 69999999 48888888888888777777766555554333
No 272
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=5.8e-22 Score=170.37 Aligned_cols=146 Identities=17% Similarity=0.253 Sum_probs=100.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCc--C---CCceEEEeeecCCC---------CCCCC-CCC-----CChhhhhh-----
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCE--T---VRRTMHIVNLDPAA---------ENFDY-PVA-----MDIRELIS----- 58 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~--~---~~G~i~i~~~d~~~---------~~~~~-~~~-----~~i~~~i~----- 58 (238)
+++|+||||||||||+++|+|+.+ | ++|+|.++|.++.. ..++| +++ .++.+++.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~ 112 (252)
T PRK14255 33 ITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFPFSIYENVIYGLRL 112 (252)
T ss_pred EEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCccCCCcHHHHHHHHHHH
Confidence 689999999999999999999875 4 58999999976521 12333 221 35555543
Q ss_pred ------------HHHHHHHcCCCCCC--chhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHH
Q 026486 59 ------------LEDVMEELGLGPNG--GLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (238)
Q Consensus 59 ------------~~~~l~~~~l~~~~--~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ 121 (238)
+.+.++.+++...- ........++++++ ++||++++. +|+++|+||||+ ||+.++..+. +
T Consensus 113 ~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~-~ 189 (252)
T PRK14255 113 AGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAV--KPDVILLDEPTSALDPISSTQIE-N 189 (252)
T ss_pred cCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHHHHHH-H
Confidence 12223444442110 00111123444443 899999999 999999999999 9999999999 9
Q ss_pred HHHHHHhCCCeEEEEEecccccccchhHHHhhhHHH
Q 026486 122 FVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMAS 157 (238)
Q Consensus 122 ll~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~ 157 (238)
+++++.+ +.++|++ +|.......+++.++..
T Consensus 190 ~l~~~~~-~~tii~v----sH~~~~~~~~~d~i~~l 220 (252)
T PRK14255 190 MLLELRD-QYTIILV----THSMHQASRISDKTAFF 220 (252)
T ss_pred HHHHHHh-CCEEEEE----ECCHHHHHHhCCEEEEE
Confidence 8988865 5777777 47777666666655443
No 273
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=1e-21 Score=169.78 Aligned_cols=146 Identities=20% Similarity=0.265 Sum_probs=103.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcC-----CCceEEEeeecCCC---------CCCCC-CC-----CCChhhhhh----
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELIS---- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~-----~~G~i~i~~~d~~~---------~~~~~-~~-----~~~i~~~i~---- 58 (238)
-+++|+|+||||||||+++|+|+++| ++|+|.++|.+... ..++| ++ ..++++++.
T Consensus 34 e~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~ 113 (259)
T PRK14260 34 KVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYENVAYGVR 113 (259)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEecccccCCccHHHHHHHHHH
Confidence 36899999999999999999999985 48999999876521 12333 11 145655543
Q ss_pred -------------HHHHHHHcCCCCC--CchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHH
Q 026486 59 -------------LEDVMEELGLGPN--GGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (238)
Q Consensus 59 -------------~~~~l~~~~l~~~--~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~ 120 (238)
+.++++.+++... .........++++++ +.||++++. +|+++|+||||+ ||+.++..+.
T Consensus 114 ~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l~- 190 (259)
T PRK14260 114 ISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAI--KPKVLLMDEPCSALDPIATMKVE- 190 (259)
T ss_pred HhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHHHHHH-
Confidence 2345566666321 001111234555543 899999999 999999999999 9999999999
Q ss_pred HHHHHHHhCCCeEEEEEecccccccchhHHHhhhHH
Q 026486 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMA 156 (238)
Q Consensus 121 ~ll~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~ 156 (238)
++++++++ +.+++++ +|...+...+++.+++
T Consensus 191 ~~l~~~~~-~~tiii~----tH~~~~i~~~~d~i~~ 221 (259)
T PRK14260 191 ELIHSLRS-ELTIAIV----THNMQQATRVSDFTAF 221 (259)
T ss_pred HHHHHHhc-CCEEEEE----eCCHHHHHHhcCeEEE
Confidence 88888865 5788777 4888877777775443
No 274
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.86 E-value=4.6e-22 Score=189.69 Aligned_cols=133 Identities=19% Similarity=0.172 Sum_probs=97.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-------CCCCC-CC-----CCChhhhhh-----------H
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS-----------L 59 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~-----~~~i~~~i~-----------~ 59 (238)
.++|+||||||||||+++|+|+++|++|+|.++|.+... +.++| +| +-|+++++. +
T Consensus 371 ~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i 450 (582)
T PRK11176 371 TVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQI 450 (582)
T ss_pred EEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHH
Confidence 579999999999999999999999999999999987642 34555 33 235777665 3
Q ss_pred HHHHHHcCCCC------CCchhh----hHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 026486 60 EDVMEELGLGP------NGGLIY----CMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (238)
Q Consensus 60 ~~~l~~~~l~~------~~~~~~----~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l 126 (238)
.++++..++.+ +| ... .-..+++|++ .+|||++.. +|+++|+||||+ ||+.+...++ +.+.++
T Consensus 451 ~~al~~~~l~~~i~~lp~G-ldt~ig~~g~~LSGGqrQRi~LARall~--~~~ililDEptsaLD~~t~~~i~-~~l~~~ 526 (582)
T PRK11176 451 EEAARMAYAMDFINKMDNG-LDTVIGENGVLLSGGQRQRIAIARALLR--DSPILILDEATSALDTESERAIQ-AALDEL 526 (582)
T ss_pred HHHHHHhCcHHHHHhcccc-cCceeCCCCCcCCHHHHHHHHHHHHHHh--CCCEEEEECccccCCHHHHHHHH-HHHHHH
Confidence 44455554321 11 000 0023555543 899999999 999999999999 9999999998 777776
Q ss_pred HhCCCeEEEEEeccccccc
Q 026486 127 KSRNFNVCAVYLLDSQFIT 145 (238)
Q Consensus 127 ~~~~~tvi~v~l~d~~~~~ 145 (238)
. +++|+|+|. |...
T Consensus 527 ~-~~~tvI~Vt----Hr~~ 540 (582)
T PRK11176 527 Q-KNRTSLVIA----HRLS 540 (582)
T ss_pred h-CCCEEEEEe----cchH
Confidence 4 468888884 6663
No 275
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.86 E-value=6.2e-22 Score=183.88 Aligned_cols=163 Identities=19% Similarity=0.234 Sum_probs=129.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCC----CceEEEeeecCCC-----------CCCCC---------CCCCChhhhhh
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETV----RRTMHIVNLDPAA-----------ENFDY---------PVAMDIRELIS 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~----~G~i~i~~~d~~~-----------~~~~~---------~~~~~i~~~i~ 58 (238)
-++||+|.+||||||+.+++.|++++. +|+|.++|.|... ..++| .|.++|.+.+.
T Consensus 36 E~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~ 115 (539)
T COG1123 36 EILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIR 115 (539)
T ss_pred cEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchhhcCchhhHHHHHH
Confidence 368999999999999999999999987 7999999986521 22333 33455555443
Q ss_pred -----------------HHHHHHHcCCCCCCch-hhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHH
Q 026486 59 -----------------LEDVMEELGLGPNGGL-IYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVP 117 (238)
Q Consensus 59 -----------------~~~~l~~~~l~~~~~~-~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~ 117 (238)
+.++++.+|+.+.... .|+ +.+++|++ +.||+|++. +|++||+||||. ||+.++.+
T Consensus 116 E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yP-heLSGG~rQRv~iAmALa~--~P~LLIaDEPTTaLDvt~q~q 192 (539)
T COG1123 116 EALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYP-HQLSGGMRQRVMIAMALAL--KPKLLIADEPTTALDVTTQAQ 192 (539)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCC-cccCchHHHHHHHHHHHhC--CCCEEEECCCccccCHHHHHH
Confidence 6788999999876543 355 45777765 899999999 999999999998 99999999
Q ss_pred HHHHHHHHHHh-CCCeEEEEEecccccccchhHHHhhhHHHHHHHHhhcCCeeeeec
Q 026486 118 VLRNFVDHLKS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILS 173 (238)
Q Consensus 118 ~~~~ll~~l~~-~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~~~p~~~vls 173 (238)
++ ++++++++ .|.++++| ||.+.=.+.+++.++++..|.+.-..|.-.|++
T Consensus 193 IL-~llk~l~~e~g~a~l~I----THDl~Vva~~aDrv~Vm~~G~iVE~G~~~~i~~ 244 (539)
T COG1123 193 IL-DLLKDLQRELGMAVLFI----THDLGVVAELADRVVVMYKGEIVETGPTEEILS 244 (539)
T ss_pred HH-HHHHHHHHHcCcEEEEE----cCCHHHHHHhcCeEEEEECCEEEEecCHHHHHh
Confidence 99 99999985 69999888 598888888888887777777766666655554
No 276
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=1.1e-21 Score=169.60 Aligned_cols=146 Identities=21% Similarity=0.249 Sum_probs=101.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEee------ecCC-------CCCCCC-------CCCCChhhhhh----
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN------LDPA-------AENFDY-------PVAMDIRELIS---- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~------~d~~-------~~~~~~-------~~~~~i~~~i~---- 58 (238)
-+++|+||||||||||+++|+|+++|++|+|.+.| .++. ...++| .+..++.+++.
T Consensus 37 e~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~ 116 (257)
T PRK14246 37 SIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLK 116 (257)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHH
Confidence 36899999999999999999999999997766654 3331 112333 22345555443
Q ss_pred -------------HHHHHHHcCCCCC--CchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHH
Q 026486 59 -------------LEDVMEELGLGPN--GGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (238)
Q Consensus 59 -------------~~~~l~~~~l~~~--~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~ 120 (238)
+.++++.+++.+. .........++++++ .+||++++. +|+++++||||+ ||+.++..+.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~--~P~llllDEPt~~LD~~~~~~l~- 193 (257)
T PRK14246 117 SHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALAL--KPKVLLMDEPTSMIDIVNSQAIE- 193 (257)
T ss_pred hcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHc--CCCEEEEcCCCccCCHHHHHHHH-
Confidence 3445666777531 000011123444443 899999999 999999999999 9999999999
Q ss_pred HHHHHHHhCCCeEEEEEecccccccchhHHHhhhHH
Q 026486 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMA 156 (238)
Q Consensus 121 ~ll~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~ 156 (238)
+++.++++ +.+++++ +|.......+++.++.
T Consensus 194 ~~l~~~~~-~~tiilv----sh~~~~~~~~~d~v~~ 224 (257)
T PRK14246 194 KLITELKN-EIAIVIV----SHNPQQVARVADYVAF 224 (257)
T ss_pred HHHHHHhc-CcEEEEE----ECCHHHHHHhCCEEEE
Confidence 88888854 5788777 4877766666664433
No 277
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=1e-21 Score=171.40 Aligned_cols=150 Identities=18% Similarity=0.222 Sum_probs=105.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcC-----CCceEEEeeecCCC--------CCCCC-CC-----CCChhhhhh-----
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA--------ENFDY-PV-----AMDIRELIS----- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~-----~~G~i~i~~~d~~~--------~~~~~-~~-----~~~i~~~i~----- 58 (238)
-+++|+||||||||||+++|+|+++| ++|+|.++|.++.. ..++| ++ ..++++++.
T Consensus 48 e~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l~~~tv~eni~~~~~~ 127 (276)
T PRK14271 48 AVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRA 127 (276)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCccCCccHHHHHHHHHHh
Confidence 36899999999999999999999985 69999999866421 12333 22 135665543
Q ss_pred ------------HHHHHHHcCCCCCCc--hhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHH
Q 026486 59 ------------LEDVMEELGLGPNGG--LIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (238)
Q Consensus 59 ------------~~~~l~~~~l~~~~~--~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ 121 (238)
+.++++.+++..... .......++++++ ++||++++. +|+++|+||||+ ||+.++..+. +
T Consensus 128 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~--~p~lllLDEPt~~LD~~~~~~l~-~ 204 (276)
T PRK14271 128 HKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAV--NPEVLLLDEPTSALDPTTTEKIE-E 204 (276)
T ss_pred ccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-H
Confidence 134456677653110 0111234555543 899999999 999999999999 9999999999 8
Q ss_pred HHHHHHhCCCeEEEEEecccccccchhHHHhhhHHHHHH
Q 026486 122 FVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSA 160 (238)
Q Consensus 122 ll~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~ 160 (238)
+++++++ +.++|++ +|...+...+++.++....+
T Consensus 205 ~L~~~~~-~~tiiiv----sH~~~~~~~~~dri~~l~~G 238 (276)
T PRK14271 205 FIRSLAD-RLTVIIV----THNLAQAARISDRAALFFDG 238 (276)
T ss_pred HHHHHhc-CCEEEEE----eCCHHHHHHhCCEEEEEECC
Confidence 8888865 4788777 48777767777755544333
No 278
>PRK13409 putative ATPase RIL; Provisional
Probab=99.86 E-value=2.1e-21 Score=185.32 Aligned_cols=145 Identities=16% Similarity=0.175 Sum_probs=108.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCC--CCCCCCCCCCChhhhhh-----------HHHHHHHcCCC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--AENFDYPVAMDIRELIS-----------LEDVMEELGLG 69 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~--~~~~~~~~~~~i~~~i~-----------~~~~l~~~~l~ 69 (238)
-+++|+||||||||||+++|+|+++|++|+|.+. ...+ .+........++++++. +.++++.+++.
T Consensus 366 eiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~ 444 (590)
T PRK13409 366 EVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-LKISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLE 444 (590)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-eeEEEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCH
Confidence 3689999999999999999999999999999874 2111 11112223456666553 35678888886
Q ss_pred CCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CCCeEEEEEeccccccc
Q 026486 70 PNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNVCAVYLLDSQFIT 145 (238)
Q Consensus 70 ~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~~tvi~v~l~d~~~~~ 145 (238)
+.... ....+++|++ ++||++++. +|+++||||||+ ||+.++..+. ++++++++ .|.++++| +|...
T Consensus 445 ~~~~~--~~~~LSGGe~QRvaiAraL~~--~p~llLLDEPt~~LD~~~~~~l~-~~l~~l~~~~g~tviiv----sHD~~ 515 (590)
T PRK13409 445 RLLDK--NVKDLSGGELQRVAIAACLSR--DADLYLLDEPSAHLDVEQRLAVA-KAIRRIAEEREATALVV----DHDIY 515 (590)
T ss_pred HHHhC--CcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCccCCCHHHHHHHH-HHHHHHHHhCCCEEEEE----eCCHH
Confidence 43211 2345666543 999999999 999999999999 9999999999 99999976 47888888 48777
Q ss_pred chhHHHhhhHHH
Q 026486 146 DVTKFISGCMAS 157 (238)
Q Consensus 146 d~~~~~~~~l~~ 157 (238)
....+++.+++.
T Consensus 516 ~~~~~aDrvivl 527 (590)
T PRK13409 516 MIDYISDRLMVF 527 (590)
T ss_pred HHHHhCCEEEEE
Confidence 777777765543
No 279
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=5.8e-22 Score=172.76 Aligned_cols=146 Identities=18% Similarity=0.185 Sum_probs=101.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcC-----CCceEEEeeecCCC---------CCCCC-CCC-----CChhhhhhH---
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA---------ENFDY-PVA-----MDIRELISL--- 59 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~-----~~G~i~i~~~d~~~---------~~~~~-~~~-----~~i~~~i~~--- 59 (238)
-+++|+||||||||||+++|+|++++ ++|+|.++|.++.. ..++| +++ .++.+++..
T Consensus 47 e~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~ 126 (274)
T PRK14265 47 KIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPFPKSIYENIAFAPR 126 (274)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEccCCccccccHHHHHHhHHH
Confidence 36899999999999999999999863 58999999976521 12333 221 255555431
Q ss_pred ------------HHHHHHcCCCCCCc--hhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHH
Q 026486 60 ------------EDVMEELGLGPNGG--LIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (238)
Q Consensus 60 ------------~~~l~~~~l~~~~~--~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~l 122 (238)
.+.++.+++..... .......++++++ +.||++++. +|+++|+||||+ ||+.++..+. ++
T Consensus 127 ~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~--~p~lllLDEPt~~LD~~~~~~l~-~~ 203 (274)
T PRK14265 127 ANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAM--KPDVLLMDEPCSALDPISTRQVE-EL 203 (274)
T ss_pred hcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhh--CCCEEEEeCCcccCCHHHHHHHH-HH
Confidence 23445555531100 0011123455443 899999999 999999999999 9999999999 89
Q ss_pred HHHHHhCCCeEEEEEecccccccchhHHHhhhHH
Q 026486 123 VDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMA 156 (238)
Q Consensus 123 l~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~ 156 (238)
++++++ +.+++++ +|.......+++.+++
T Consensus 204 L~~~~~-~~tiii~----sH~~~~~~~~~d~i~~ 232 (274)
T PRK14265 204 CLELKE-QYTIIMV----THNMQQASRVADWTAF 232 (274)
T ss_pred HHHHhc-CCEEEEE----eCCHHHHHHhCCEEEE
Confidence 998864 6777777 4888777777765443
No 280
>PRK13409 putative ATPase RIL; Provisional
Probab=99.85 E-value=1.5e-21 Score=186.27 Aligned_cols=144 Identities=20% Similarity=0.225 Sum_probs=108.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEE-----------EeeecCCC---------CC----CCC---CCC---CC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMH-----------IVNLDPAA---------EN----FDY---PVA---MD 52 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~-----------i~~~d~~~---------~~----~~~---~~~---~~ 52 (238)
-+++|+||||||||||+|+|+|+++|+.|+|. +.|.++.. .. ..| .+. .+
T Consensus 100 ev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~q~~~~~p~~~~~t 179 (590)
T PRK13409 100 KVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVHKPQYVDLIPKVFKGK 179 (590)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHHhccCcceeecccchhhhhhhhcch
Confidence 36899999999999999999999999999997 77765421 11 122 111 15
Q ss_pred hhhhhh-------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHH
Q 026486 53 IRELIS-------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (238)
Q Consensus 53 i~~~i~-------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~l 122 (238)
+++++. ++++++.+++...... ....++++++ ++||++++. +|+++||||||+ ||+..+..+. ++
T Consensus 180 v~e~l~~~~~~~~~~~~l~~l~l~~~~~~--~~~~LSgGe~qrv~ia~al~~--~p~lllLDEPts~LD~~~~~~l~-~~ 254 (590)
T PRK13409 180 VRELLKKVDERGKLDEVVERLGLENILDR--DISELSGGELQRVAIAAALLR--DADFYFFDEPTSYLDIRQRLNVA-RL 254 (590)
T ss_pred HHHHHHhhhHHHHHHHHHHHcCCchhhcC--ChhhCCHHHHHHHHHHHHHhc--CCCEEEEECCCCCCCHHHHHHHH-HH
Confidence 666552 5678889998753222 2345666644 899999999 999999999999 9999999999 99
Q ss_pred HHHHHhCCCeEEEEEecccccccchhHHHhhhHH
Q 026486 123 VDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMA 156 (238)
Q Consensus 123 l~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~ 156 (238)
++++++ |.++|+| +|.+.....+++.+++
T Consensus 255 i~~l~~-g~tvIiv----sHd~~~l~~~~D~v~v 283 (590)
T PRK13409 255 IRELAE-GKYVLVV----EHDLAVLDYLADNVHI 283 (590)
T ss_pred HHHHHC-CCEEEEE----eCCHHHHHHhCCEEEE
Confidence 999977 8888888 4777766666665543
No 281
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.85 E-value=1.5e-21 Score=162.70 Aligned_cols=137 Identities=22% Similarity=0.216 Sum_probs=89.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeee-cCCCCCCCCCCCCChhhhhh---------HHHHHHHcCCCC---
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL-DPAAENFDYPVAMDIRELIS---------LEDVMEELGLGP--- 70 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~-d~~~~~~~~~~~~~i~~~i~---------~~~~l~~~~l~~--- 70 (238)
+++|+||||||||||+++|+|+.+|++|+|.++|. -...+...+. ..++++++. ..+..+.+++..
T Consensus 33 ~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~i~~~~q~~~l~-~~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~ 111 (204)
T cd03250 33 LVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVSQEPWIQ-NGTIRENILFGKPFDEERYEKVIKACALEPDLE 111 (204)
T ss_pred EEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCEEEEEecCchhc-cCcHHHHhccCCCcCHHHHHHHHHHcCcHHHHH
Confidence 68999999999999999999999999999999871 0000111111 234444443 223333333311
Q ss_pred ---CC---chhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEEeccc
Q 026486 71 ---NG---GLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDS 141 (238)
Q Consensus 71 ---~~---~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~tvi~v~l~d~ 141 (238)
.+ ........++++++ ++||++++. +|+++++|||++ ||+.+++.++..+++.+.+.+.++|+++
T Consensus 112 ~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~--~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~s---- 185 (204)
T cd03250 112 ILPDGDLTEIGEKGINLSGGQKQRISLARAVYS--DADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVT---- 185 (204)
T ss_pred hccCcccceecCCCCcCCHHHHHHHHHHHHHhc--CCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEe----
Confidence 00 00000123444433 899999999 999999999999 9999999988336676655578888773
Q ss_pred ccccch
Q 026486 142 QFITDV 147 (238)
Q Consensus 142 ~~~~d~ 147 (238)
|.....
T Consensus 186 h~~~~~ 191 (204)
T cd03250 186 HQLQLL 191 (204)
T ss_pred CCHHHH
Confidence 665433
No 282
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=2.2e-21 Score=166.96 Aligned_cols=147 Identities=16% Similarity=0.201 Sum_probs=101.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcC-----CCceEEEeeecCCC---------CCCCC-CCC-----CChhhhhh----
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA---------ENFDY-PVA-----MDIRELIS---- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~-----~~G~i~i~~~d~~~---------~~~~~-~~~-----~~i~~~i~---- 58 (238)
-+++|+||||||||||+++|+|+.++ ++|+|.++|.++.. ..++| +++ .++++++.
T Consensus 33 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~ 112 (253)
T PRK14261 33 RVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPFPKSIYENVAYGPR 112 (253)
T ss_pred cEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCccCcccHHHHHHhhHH
Confidence 36899999999999999999999763 48999999876421 12333 221 24544443
Q ss_pred -------------HHHHHHHcCCCCCC--chhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHH
Q 026486 59 -------------LEDVMEELGLGPNG--GLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (238)
Q Consensus 59 -------------~~~~l~~~~l~~~~--~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~ 120 (238)
+.++++.+++.+.- ........++++++ ++||++++. +|+++|+|||++ ||+.++..+.
T Consensus 113 ~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~--~p~lllLDEP~~gLD~~~~~~l~- 189 (253)
T PRK14261 113 IHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAV--NPEVILMDEPCSALDPIATAKIE- 189 (253)
T ss_pred hcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-
Confidence 23344555553210 00111234555543 899999999 999999999999 9999999998
Q ss_pred HHHHHHHhCCCeEEEEEecccccccchhHHHhhhHHH
Q 026486 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMAS 157 (238)
Q Consensus 121 ~ll~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~ 157 (238)
++++++++ +.+++++ +|.......+++.+++.
T Consensus 190 ~~l~~~~~-~~tvii~----sh~~~~~~~~~d~v~~l 221 (253)
T PRK14261 190 DLIEDLKK-EYTVIIV----THNMQQAARVSDYTGFM 221 (253)
T ss_pred HHHHHHhh-CceEEEE----EcCHHHHHhhCCEEEEE
Confidence 99998865 5777777 48777666666654433
No 283
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=1.2e-21 Score=175.03 Aligned_cols=152 Identities=14% Similarity=0.238 Sum_probs=107.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCc-----CCCceEEEeeecCCC---------CCCCC-CC-----CCChhhhhh----
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELIS---- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~-----~~~G~i~i~~~d~~~---------~~~~~-~~-----~~~i~~~i~---- 58 (238)
-.++|+||||||||||+++|+|+.+ |++|+|.++|.+... ..++| ++ ..++++++.
T Consensus 109 e~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~ 188 (329)
T PRK14257 109 KVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPR 188 (329)
T ss_pred CEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCCCcHHHHHHhHHH
Confidence 3689999999999999999999986 579999999988641 22333 22 346666664
Q ss_pred -------------HHHHHHHcCCCCCC--chhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHH
Q 026486 59 -------------LEDVMEELGLGPNG--GLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (238)
Q Consensus 59 -------------~~~~l~~~~l~~~~--~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~ 120 (238)
+.++++.+++.+.. ........++++++ ++|||+++. +|+++|+||||+ ||+.+...+.
T Consensus 189 ~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARAl~~--~p~IlLLDEPts~LD~~~~~~i~- 265 (329)
T PRK14257 189 NNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIAL--EPEVLLMDEPTSALDPIATAKIE- 265 (329)
T ss_pred hcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHHHHh--CCCEEEEeCCcccCCHHHHHHHH-
Confidence 22345566653210 00011123444443 899999999 999999999999 9999999977
Q ss_pred HHHHHHHhCCCeEEEEEecccccccchhHHHhhhHHHHHHHH
Q 026486 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMV 162 (238)
Q Consensus 121 ~ll~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~ 162 (238)
+.++.+.+ +.|+++| +|.+.....+++.+++...|.+
T Consensus 266 ~~i~~l~~-~~Tii~i----TH~l~~i~~~~Driivl~~G~i 302 (329)
T PRK14257 266 ELILELKK-KYSIIIV----THSMAQAQRISDETVFFYQGWI 302 (329)
T ss_pred HHHHHHhc-CCEEEEE----eCCHHHHHHhCCEEEEEECCEE
Confidence 88888865 6888877 4888777777775554444433
No 284
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.85 E-value=3.5e-21 Score=155.95 Aligned_cols=119 Identities=18% Similarity=0.175 Sum_probs=86.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCCCCCCC-CC-----CCChhhhhhHHHHHHHcCCCCCCchhh
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDY-PV-----AMDIRELISLEDVMEELGLGPNGGLIY 76 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~-~~-----~~~i~~~i~~~~~l~~~~l~~~~~~~~ 76 (238)
-+++|+||||||||||+++|+|+++|++|+|.+.+. ..++| +| ..++++++... .
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~----~~i~~~~q~~~~~~~tv~~nl~~~---------~------ 88 (166)
T cd03223 28 DRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG----EDLLFLPQRPYLPLGTLREQLIYP---------W------ 88 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC----ceEEEECCCCccccccHHHHhhcc---------C------
Confidence 368999999999999999999999999999999763 22333 22 23455544321 1
Q ss_pred hHHhhhhhH--HHHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccchhHHHh
Q 026486 77 CMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (238)
Q Consensus 77 ~~~~~~~~~--s~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~tvi~v~l~d~~~~~d~~~~~~ 152 (238)
...+++++ ++.+|++++. +|+++++|||++ ||+.++..+. ++++++ +.+++++ +|.... ..+++
T Consensus 89 -~~~LS~G~~~rv~laral~~--~p~~lllDEPt~~LD~~~~~~l~-~~l~~~---~~tiiiv----sh~~~~-~~~~d 155 (166)
T cd03223 89 -DDVLSGGEQQRLAFARLLLH--KPKFVFLDEATSALDEESEDRLY-QLLKEL---GITVISV----GHRPSL-WKFHD 155 (166)
T ss_pred -CCCCCHHHHHHHHHHHHHHc--CCCEEEEECCccccCHHHHHHHH-HHHHHh---CCEEEEE----eCChhH-HhhCC
Confidence 12344443 3899999999 999999999999 9999999888 777765 5677777 365542 23444
No 285
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.85 E-value=8e-22 Score=191.50 Aligned_cols=133 Identities=20% Similarity=0.163 Sum_probs=97.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-------CCCCC-CC-----CCChhhhhh---------HHH
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS---------LED 61 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~-----~~~i~~~i~---------~~~ 61 (238)
.++|+||||||||||+|+|+|+++|++|+|.++|.|... +.++| +| +-|++|++. +.+
T Consensus 481 ~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~ 560 (686)
T TIGR03797 481 FVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWE 560 (686)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCCCCHHHHHH
Confidence 589999999999999999999999999999999988753 34555 33 236788875 345
Q ss_pred HHHHcCCCC------CCchh---hhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC
Q 026486 62 VMEELGLGP------NGGLI---YCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR 129 (238)
Q Consensus 62 ~l~~~~l~~------~~~~~---~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~ 129 (238)
+++..++.+ .|-.. ..-..+++|++ ++|||++.. +|+++||||||+ ||+.+.+.+. +.++++
T Consensus 561 al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~--~p~iLiLDEpTS~LD~~te~~i~-~~L~~~--- 634 (686)
T TIGR03797 561 AARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVR--KPRILLFDEATSALDNRTQAIVS-ESLERL--- 634 (686)
T ss_pred HHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCCccCCCHHHHHHHH-HHHHHh---
Confidence 566655532 11000 00023555544 899999999 999999999999 9999998888 666655
Q ss_pred CCeEEEEEecccccccc
Q 026486 130 NFNVCAVYLLDSQFITD 146 (238)
Q Consensus 130 ~~tvi~v~l~d~~~~~d 146 (238)
++|+|+| +|..+.
T Consensus 635 ~~T~IiI----tHr~~~ 647 (686)
T TIGR03797 635 KVTRIVI----AHRLST 647 (686)
T ss_pred CCeEEEE----ecChHH
Confidence 4688777 477643
No 286
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.85 E-value=1.4e-21 Score=174.30 Aligned_cols=155 Identities=19% Similarity=0.258 Sum_probs=119.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC----------C------CCCC---CCCCChhhhhh------
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------E------NFDY---PVAMDIRELIS------ 58 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~----------~------~~~~---~~~~~i~~~i~------ 58 (238)
.++|+|.+|||||||-++|.+++++. |+|.+.|.+... . .-+| .|.++|.+.|.
T Consensus 315 TlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh 393 (534)
T COG4172 315 TLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVH 393 (534)
T ss_pred eEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhc
Confidence 57999999999999999999999887 999999988642 0 1123 45667766664
Q ss_pred ------------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHH
Q 026486 59 ------------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV 123 (238)
Q Consensus 59 ------------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll 123 (238)
+.++|+++||+|+.-.+|+. .++++++ .+|||+++. +|+++++||||+ ||...+.+++ +++
T Consensus 394 ~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPh-EFSGGQRQRIAIARAliL--kP~~i~LDEPTSALD~SVQaQvv-~LL 469 (534)
T COG4172 394 EPKLSAAERDQRVIEALEEVGLDPATRNRYPH-EFSGGQRQRIAIARALIL--KPELILLDEPTSALDRSVQAQVL-DLL 469 (534)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCChhHhhcCCc-ccCcchhhHHHHHHHHhc--CCcEEEecCCchHhhHHHHHHHH-HHH
Confidence 78899999999987777774 5666655 899999999 999999999999 9999999999 999
Q ss_pred HHHHh-CCCeEEEEEecccccccchhHHHhhhHHHHHHHHhhcCC
Q 026486 124 DHLKS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELP 167 (238)
Q Consensus 124 ~~l~~-~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~~~p 167 (238)
++|++ .|.+-+++ ||.+.=+-..+..++++..|.+.-..|
T Consensus 470 r~LQ~k~~LsYLFI----SHDL~VvrAl~~~viVm~~GkiVE~G~ 510 (534)
T COG4172 470 RDLQQKHGLSYLFI----SHDLAVVRALCHRVIVMRDGKIVEQGP 510 (534)
T ss_pred HHHHHHhCCeEEEE----eccHHHHHHhhceEEEEeCCEEeeeCC
Confidence 99986 57777777 587764444554444444443333333
No 287
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=2.4e-21 Score=183.09 Aligned_cols=148 Identities=15% Similarity=0.119 Sum_probs=104.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeec-CC--CCCCCCCCCCChhhhh----------------------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-PA--AENFDYPVAMDIRELI---------------------- 57 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d-~~--~~~~~~~~~~~i~~~i---------------------- 57 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.. ++ .+....++..++++++
T Consensus 28 e~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~ 107 (530)
T PRK15064 28 NRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPE 107 (530)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccc
Confidence 3689999999999999999999999999999987631 10 0111112223333322
Q ss_pred --------------------------hHHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc
Q 026486 58 --------------------------SLEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ 109 (238)
Q Consensus 58 --------------------------~~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~ 109 (238)
.+.++++.+|+..... ......++++++ ++||++++. +|+++||||||+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~~LSgGq~qrv~lA~aL~~--~p~lLlLDEPt~ 184 (530)
T PRK15064 108 MSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQH-YGLMSEVAPGWKLRVLLAQALFS--NPDILLLDEPTN 184 (530)
T ss_pred cccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHh-cCchhhcCHHHHHHHHHHHHHhc--CCCEEEEcCCCc
Confidence 1345677788753211 112345666654 999999999 999999999999
Q ss_pred -ccHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccchhHHHhhhHHHHHHH
Q 026486 110 -IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAM 161 (238)
Q Consensus 110 -LD~~~~~~~~~~ll~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~ 161 (238)
||+.++..+. ++++ +.+.+||+| +|.......+++.++....+.
T Consensus 185 ~LD~~~~~~l~-~~l~---~~~~tiiiv----sHd~~~~~~~~d~i~~l~~g~ 229 (530)
T PRK15064 185 NLDINTIRWLE-DVLN---ERNSTMIII----SHDRHFLNSVCTHMADLDYGE 229 (530)
T ss_pred ccCHHHHHHHH-HHHH---hCCCeEEEE----eCCHHHHHhhcceEEEEeCCE
Confidence 9999998888 7664 357888877 488877777777665544443
No 288
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=2.6e-21 Score=166.11 Aligned_cols=144 Identities=16% Similarity=0.248 Sum_probs=99.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCc-----CCCceEEEeeecCCC---------CCCCC-CCC-----CChhhhhh----
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPAA---------ENFDY-PVA-----MDIRELIS---- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~-----~~~G~i~i~~~d~~~---------~~~~~-~~~-----~~i~~~i~---- 58 (238)
-+++|+||||||||||+++|+|+.+ |++|+|.++|.++.. ..++| +++ .++.+++.
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~ 109 (250)
T PRK14266 30 SVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLR 109 (250)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCCccCcchHHHHHHhHHh
Confidence 3689999999999999999999864 389999999976531 12333 221 13444432
Q ss_pred -------------HHHHHHHcCCCCCC--chhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHH
Q 026486 59 -------------LEDVMEELGLGPNG--GLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (238)
Q Consensus 59 -------------~~~~l~~~~l~~~~--~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~ 120 (238)
+.++++.+++...- ........++++++ +.||++++. +|+++++|||++ ||+.++..+.
T Consensus 110 ~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~--~p~llllDEP~~gLD~~~~~~l~- 186 (250)
T PRK14266 110 IHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAV--SPEVILMDEPCSALDPISTTKIE- 186 (250)
T ss_pred hcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHc--CCCEEEEcCCCccCCHHHHHHHH-
Confidence 23345555653210 00011123444443 899999999 999999999999 9999999998
Q ss_pred HHHHHHHhCCCeEEEEEecccccccchhHHHhhh
Q 026486 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGC 154 (238)
Q Consensus 121 ~ll~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~ 154 (238)
++++++++ +.+++++ +|...+...+++.+
T Consensus 187 ~~l~~~~~-~~tiii~----sh~~~~~~~~~~~i 215 (250)
T PRK14266 187 DLIHKLKE-DYTIVIV----THNMQQATRVSKYT 215 (250)
T ss_pred HHHHHHhc-CCeEEEE----ECCHHHHHhhcCEE
Confidence 99998854 7788777 47777666666543
No 289
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.85 E-value=1.2e-21 Score=170.88 Aligned_cols=155 Identities=18% Similarity=0.160 Sum_probs=107.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-------CCCCC-CCC-----CChhhhhh---------HHH
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PVA-----MDIRELIS---------LED 61 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~~-----~~i~~~i~---------~~~ 61 (238)
+++|+||||||||||+++|+|+++ .+|+|.++|.++.. ..+.| +++ .++++++. +.+
T Consensus 32 ~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~ 110 (275)
T cd03289 32 RVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNLDPYGKWSDEEIWK 110 (275)
T ss_pred EEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhEEEECCCcccchhhHHHHhhhccCCCHHHHHH
Confidence 689999999999999999999998 78999999987632 12333 222 25666553 455
Q ss_pred HHHHcCCCCCCchhh-hH--------HhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC
Q 026486 62 VMEELGLGPNGGLIY-CM--------EHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR 129 (238)
Q Consensus 62 ~l~~~~l~~~~~~~~-~~--------~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~ 129 (238)
+++.+|+.+...... .+ ..++++++ +.|||+++. +|+++++||||+ ||+.++..+. +.++++. .
T Consensus 111 ~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~--~p~illlDEpts~LD~~~~~~l~-~~l~~~~-~ 186 (275)
T cd03289 111 VAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLS--KAKILLLDEPSAHLDPITYQVIR-KTLKQAF-A 186 (275)
T ss_pred HHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEECccccCCHHHHHHHH-HHHHHhc-C
Confidence 677777753211000 00 01444433 899999999 999999999999 9999999888 8888764 4
Q ss_pred CCeEEEEEecccccccchhHHHhhhHHHHHHHHhhcCCe
Q 026486 130 NFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPH 168 (238)
Q Consensus 130 ~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~~~p~ 168 (238)
+.|+|+| +|.+..... ++.+++...+.+....++
T Consensus 187 ~~tii~i----sH~~~~i~~-~dri~vl~~G~i~~~g~~ 220 (275)
T cd03289 187 DCTVILS----EHRIEAMLE-CQRFLVIEENKVRQYDSI 220 (275)
T ss_pred CCEEEEE----ECCHHHHHh-CCEEEEecCCeEeecCCH
Confidence 7888877 477654433 666655555555444444
No 290
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.85 E-value=7.2e-22 Score=192.50 Aligned_cols=147 Identities=12% Similarity=0.113 Sum_probs=102.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-------CCCCC-CC-----CCChhhhhh----------HH
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------LE 60 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~-----~~~i~~~i~----------~~ 60 (238)
.++|+||||||||||+++|+|+++|++|+|.++|.|... +.++| +| +-+++|++. +.
T Consensus 507 ~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~ 586 (710)
T TIGR03796 507 RVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLV 586 (710)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHH
Confidence 589999999999999999999999999999999987642 34455 33 336888875 44
Q ss_pred HHHHHcCCCC------CCch--h-hhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 026486 61 DVMEELGLGP------NGGL--I-YCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (238)
Q Consensus 61 ~~l~~~~l~~------~~~~--~-~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (238)
++++..++.+ .|-. . ..-..+++|++ ++|||++.. +|+++||||||+ ||..+.+.++ +.+++
T Consensus 587 ~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~--~p~iliLDEptS~LD~~te~~i~-~~l~~--- 660 (710)
T TIGR03796 587 RACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVR--NPSILILDEATSALDPETEKIID-DNLRR--- 660 (710)
T ss_pred HHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhh--CCCEEEEECccccCCHHHHHHHH-HHHHh---
Confidence 4555555431 1100 0 00023555543 899999999 999999999999 9999998888 55543
Q ss_pred CCCeEEEEEecccccccchhHHHhhhHHHHHHH
Q 026486 129 RNFNVCAVYLLDSQFITDVTKFISGCMASLSAM 161 (238)
Q Consensus 129 ~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~ 161 (238)
.++|+|+| +|..+.... ++.+++...|.
T Consensus 661 ~~~T~Iii----tHrl~~i~~-~D~Iivl~~G~ 688 (710)
T TIGR03796 661 RGCTCIIV----AHRLSTIRD-CDEIIVLERGK 688 (710)
T ss_pred cCCEEEEE----ecCHHHHHh-CCEEEEEeCCE
Confidence 47888888 487754332 44444433333
No 291
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=2.4e-21 Score=167.95 Aligned_cols=147 Identities=17% Similarity=0.229 Sum_probs=100.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcC-----CCceEEEeeecCC-----------CCCCCC-CCC-----CChhhhhh--
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPA-----------AENFDY-PVA-----MDIRELIS-- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~-----~~G~i~i~~~d~~-----------~~~~~~-~~~-----~~i~~~i~-- 58 (238)
-+++|+||||||||||+++|+|+.+| ++|+|.++|.+.. ...++| ++. .++++++.
T Consensus 43 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~ 122 (265)
T PRK14252 43 QVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPKSIFENVAYG 122 (265)
T ss_pred cEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEccCCcCCcchHHHHHHhH
Confidence 36899999999999999999999875 7999999875431 112334 221 25555543
Q ss_pred ---------------HHHHHHHcCCCCC--CchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHH
Q 026486 59 ---------------LEDVMEELGLGPN--GGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (238)
Q Consensus 59 ---------------~~~~l~~~~l~~~--~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~ 118 (238)
+.++++.+++.+. .........++++.+ +.||++++. +|+++|+|||++ ||+.++..+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEPt~gLD~~~~~~l 200 (265)
T PRK14252 123 LRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALAT--DPEILLFDEPTSALDPIATASI 200 (265)
T ss_pred HHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCCccCCHHHHHHH
Confidence 1234445555310 000011123444433 899999999 999999999999 999999999
Q ss_pred HHHHHHHHHhCCCeEEEEEecccccccchhHHHhhhHHH
Q 026486 119 LRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMAS 157 (238)
Q Consensus 119 ~~~ll~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~ 157 (238)
. ++++++++ +.+++++ +|...+...+++.+++.
T Consensus 201 ~-~~l~~l~~-~~tiiiv----th~~~~~~~~~d~i~~l 233 (265)
T PRK14252 201 E-ELISDLKN-KVTILIV----THNMQQAARVSDYTAYM 233 (265)
T ss_pred H-HHHHHHHh-CCEEEEE----ecCHHHHHHhCCEEEEE
Confidence 9 88998865 6788777 48877666666654433
No 292
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.85 E-value=8.1e-22 Score=188.48 Aligned_cols=134 Identities=16% Similarity=0.146 Sum_probs=99.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-------CCCCC-CC-----CCChhhhhh---------HHH
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS---------LED 61 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~-----~~~i~~~i~---------~~~ 61 (238)
.++|+|+||||||||+++|+|+++|++|+|.++|.+... +.++| +| +-|+++++. +.+
T Consensus 369 ~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~ 448 (592)
T PRK10790 369 FVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQ 448 (592)
T ss_pred EEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCCCCCHHHHHH
Confidence 579999999999999999999999999999999987643 34555 33 236777775 455
Q ss_pred HHHHcCCCC------CCchh---hhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC
Q 026486 62 VMEELGLGP------NGGLI---YCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR 129 (238)
Q Consensus 62 ~l~~~~l~~------~~~~~---~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~ 129 (238)
+++..|+.. +|-.. ..-..+++|++ .+|||++.. +|+++|+||||+ ||+.+.+.+. +.++++.+
T Consensus 449 a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~--~~~illlDEpts~LD~~t~~~i~-~~l~~~~~- 524 (592)
T PRK10790 449 ALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQ--TPQILILDEATANIDSGTEQAIQ-QALAAVRE- 524 (592)
T ss_pred HHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHh--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHhC-
Confidence 666666431 11000 00022555543 899999999 999999999999 9999999988 77777744
Q ss_pred CCeEEEEEeccccccc
Q 026486 130 NFNVCAVYLLDSQFIT 145 (238)
Q Consensus 130 ~~tvi~v~l~d~~~~~ 145 (238)
++|+|+| +|...
T Consensus 525 ~~tvIiv----tHr~~ 536 (592)
T PRK10790 525 HTTLVVI----AHRLS 536 (592)
T ss_pred CCEEEEE----ecchH
Confidence 6788877 47663
No 293
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.85 E-value=2.5e-21 Score=184.88 Aligned_cols=133 Identities=16% Similarity=0.221 Sum_probs=97.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-------CCCCC-CC-----CCChhhhhh----------HH
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------LE 60 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~-----~~~i~~~i~----------~~ 60 (238)
.++|+||||||||||+++|+|++ |++|+|.++|.|... +.++| +| +-|++||+. +.
T Consensus 378 ~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~ 456 (588)
T PRK11174 378 RIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQ 456 (588)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHH
Confidence 57999999999999999999999 999999999987643 23445 33 346888875 33
Q ss_pred HHHHHcCCCC------CCchhh---hHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 026486 61 DVMEELGLGP------NGGLIY---CMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (238)
Q Consensus 61 ~~l~~~~l~~------~~~~~~---~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (238)
++++..++.+ +|-... .-..+++|++ ++|||++.. +|+++||||||+ ||..+.+.+. +.++++.
T Consensus 457 ~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~--~~~IliLDE~TSaLD~~te~~i~-~~l~~~~- 532 (588)
T PRK11174 457 QALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQ--PCQLLLLDEPTASLDAHSEQLVM-QALNAAS- 532 (588)
T ss_pred HHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCCccCCCHHHHHHHH-HHHHHHh-
Confidence 4444444321 110000 0023555544 899999999 999999999999 9999999998 7777774
Q ss_pred CCCeEEEEEeccccccc
Q 026486 129 RNFNVCAVYLLDSQFIT 145 (238)
Q Consensus 129 ~~~tvi~v~l~d~~~~~ 145 (238)
+++|+|+| +|..+
T Consensus 533 ~~~TvIiI----tHrl~ 545 (588)
T PRK11174 533 RRQTTLMV----THQLE 545 (588)
T ss_pred CCCEEEEE----ecChH
Confidence 47888888 47764
No 294
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.85 E-value=2.5e-21 Score=153.43 Aligned_cols=108 Identities=18% Similarity=0.111 Sum_probs=84.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCCCCCCCCCCCChhhhhhHHHHHHHcCCCCCCchhhhHHhhh
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~~~ 82 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|. ..++|.+. ++
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~----~~i~~~~~------------------------------lS 72 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST----VKIGYFEQ------------------------------LS 72 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe----EEEEEEcc------------------------------CC
Confidence 468999999999999999999999999999999873 22333111 22
Q ss_pred hh--HHHHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccchhHHHhhh
Q 026486 83 DN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGC 154 (238)
Q Consensus 83 ~~--~s~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~ 154 (238)
.+ ++++||++++. +|+++++|||++ +|+.++..+. +.++++ +.+++++ +|...+...+++.+
T Consensus 73 ~G~~~rv~laral~~--~p~illlDEP~~~LD~~~~~~l~-~~l~~~---~~til~~----th~~~~~~~~~d~v 137 (144)
T cd03221 73 GGEKMRLALAKLLLE--NPNLLLLDEPTNHLDLESIEALE-EALKEY---PGTVILV----SHDRYFLDQVATKI 137 (144)
T ss_pred HHHHHHHHHHHHHhc--CCCEEEEeCCccCCCHHHHHHHH-HHHHHc---CCEEEEE----ECCHHHHHHhCCEE
Confidence 22 33899999999 999999999998 9999999888 777776 3577666 47776666655544
No 295
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=4.1e-21 Score=169.91 Aligned_cols=142 Identities=20% Similarity=0.290 Sum_probs=99.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCc-----CCCceEEEeeecCCC---------CCCCC-CCC-----CChhhhhh-----
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPAA---------ENFDY-PVA-----MDIRELIS----- 58 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~-----~~~G~i~i~~~d~~~---------~~~~~-~~~-----~~i~~~i~----- 58 (238)
+++|+||||||||||+++|+|+++ |++|+|.++|.++.. ..++| +++ .++++++.
T Consensus 73 ~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~ 152 (305)
T PRK14264 73 VTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPNPFPKSIRENISYGPRK 152 (305)
T ss_pred EEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHHhhceEEEccCCccccccHHHHHHhHHhh
Confidence 689999999999999999999986 689999999876531 12334 222 24555443
Q ss_pred ------------------------HHHHHHHcCCCCCC--chhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-
Q 026486 59 ------------------------LEDVMEELGLGPNG--GLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ- 109 (238)
Q Consensus 59 ------------------------~~~~l~~~~l~~~~--~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~- 109 (238)
+.++++.+++.+.. ........++++++ +.||++++. +|+++|+|||++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~LAraL~~--~p~lLLLDEPtsg 230 (305)
T PRK14264 153 HGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAV--DPEVILMDEPASA 230 (305)
T ss_pred cccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCHHHHHHHHHHHHHhc--CCCEEEEeCCccc
Confidence 22234444542100 00001123444443 899999999 999999999999
Q ss_pred ccHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccchhHHHhh
Q 026486 110 IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG 153 (238)
Q Consensus 110 LD~~~~~~~~~~ll~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~ 153 (238)
||+.++..+. ++++++++ +.++|++ +|.......+++.
T Consensus 231 LD~~~~~~l~-~~L~~~~~-~~tiiiv----tH~~~~i~~~~d~ 268 (305)
T PRK14264 231 LDPIATSKIE-DLIEELAE-EYTVVVV----THNMQQAARISDQ 268 (305)
T ss_pred CCHHHHHHHH-HHHHHHhc-CCEEEEE----EcCHHHHHHhcCE
Confidence 9999999998 99999866 4677766 5877766666664
No 296
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.84 E-value=4.4e-21 Score=179.69 Aligned_cols=145 Identities=19% Similarity=0.254 Sum_probs=104.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcC-CCceEEEeeecCCC--------CCCCC-CCC--------CChhhhh-------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCET-VRRTMHIVNLDPAA--------ENFDY-PVA--------MDIRELI------- 57 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~-~~G~i~i~~~d~~~--------~~~~~-~~~--------~~i~~~i------- 57 (238)
-+++|+||||||||||+++|+|+.++ ++|+|+++|.+... ..++| +|+ .++++.+
T Consensus 287 e~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~ 366 (490)
T PRK10938 287 EHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDS 366 (490)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccc
Confidence 36899999999999999999998875 69999999865311 12333 211 1222221
Q ss_pred -------------hHHHHHHHcCCCC-CCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHH
Q 026486 58 -------------SLEDVMEELGLGP-NGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (238)
Q Consensus 58 -------------~~~~~l~~~~l~~-~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~ 120 (238)
.++++++.+++.+ .... ....++++++ ++||++++. +|+++|+||||+ ||+.++..++
T Consensus 367 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~~LSgGq~qrv~la~al~~--~p~lllLDEPt~gLD~~~~~~l~- 441 (490)
T PRK10938 367 IGIYQAVSDRQQKLAQQWLDILGIDKRTADA--PFHSLSWGQQRLALIVRALVK--HPTLLILDEPLQGLDPLNRQLVR- 441 (490)
T ss_pred cccccCCCHHHHHHHHHHHHHcCCchhhccC--chhhCCHHHHHHHHHHHHHhc--CCCEEEEcCccccCCHHHHHHHH-
Confidence 2457788888875 3222 2245666654 899999999 999999999999 9999999999
Q ss_pred HHHHHHHhCCC-eEEEEEecccccccchhHH-HhhhHH
Q 026486 121 NFVDHLKSRNF-NVCAVYLLDSQFITDVTKF-ISGCMA 156 (238)
Q Consensus 121 ~ll~~l~~~~~-tvi~v~l~d~~~~~d~~~~-~~~~l~ 156 (238)
++++++++++. ++|++ +|...+...+ ++.+++
T Consensus 442 ~~L~~l~~~~~~tviiv----sHd~~~~~~~~~d~v~~ 475 (490)
T PRK10938 442 RFVDVLISEGETQLLFV----SHHAEDAPACITHRLEF 475 (490)
T ss_pred HHHHHHHhcCCcEEEEE----ecchhhhhhhhheeEEE
Confidence 99999976654 57666 4777666653 444433
No 297
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.84 E-value=3.6e-21 Score=182.41 Aligned_cols=133 Identities=23% Similarity=0.312 Sum_probs=95.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-------CCCCC-CC-----CCChhhhhh----------H-
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------L- 59 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~-----~~~i~~~i~----------~- 59 (238)
.++|+||||||||||+++++|+++|++|+|.++|.+... +.++| +| .-++++++. +
T Consensus 346 ~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~ 425 (544)
T TIGR01842 346 ALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKII 425 (544)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCcccccccHHHHHhccCCCCCHHHHH
Confidence 589999999999999999999999999999999987532 22333 22 235666664 2
Q ss_pred --------HHHHHHc--CCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 026486 60 --------EDVMEEL--GLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (238)
Q Consensus 60 --------~~~l~~~--~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l 126 (238)
++.++.+ |+...-+. .-..+++|++ ++|||++.. +|+++|+||||+ ||+.+.+.+. +.++++
T Consensus 426 ~~~~~~~~~~~i~~l~~gl~t~~~~--~g~~LSgGq~qrl~lARall~--~~~ililDEpts~LD~~~~~~i~-~~l~~~ 500 (544)
T TIGR01842 426 EAAKLAGVHELILRLPDGYDTVIGP--GGATLSGGQRQRIALARALYG--DPKLVVLDEPNSNLDEEGEQALA-NAIKAL 500 (544)
T ss_pred HHHHHhChHHHHHhCccccccccCC--CcCCCCHHHHHHHHHHHHHhc--CCCEEEEeCCccccCHHHHHHHH-HHHHHH
Confidence 2233333 22211000 0123555543 899999999 999999999998 9999999998 888887
Q ss_pred HhCCCeEEEEEeccccccc
Q 026486 127 KSRNFNVCAVYLLDSQFIT 145 (238)
Q Consensus 127 ~~~~~tvi~v~l~d~~~~~ 145 (238)
...++|++++ +|...
T Consensus 501 ~~~~~tvi~i----th~~~ 515 (544)
T TIGR01842 501 KARGITVVVI----THRPS 515 (544)
T ss_pred hhCCCEEEEE----eCCHH
Confidence 5567888877 47664
No 298
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.84 E-value=1.7e-21 Score=189.53 Aligned_cols=144 Identities=19% Similarity=0.200 Sum_probs=102.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-------CCCCC-CC-----CCChhhhhh----------HH
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------LE 60 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~-----~~~i~~~i~----------~~ 60 (238)
.++|+||||||||||+++|+|+++|++|+|.++|.|... +.++| +| +-|++|++. +.
T Consensus 493 ~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~ 572 (694)
T TIGR03375 493 KVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEIL 572 (694)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHH
Confidence 589999999999999999999999999999999987643 34455 33 236777775 34
Q ss_pred HHHHHcCCCC------CCch--h-hhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 026486 61 DVMEELGLGP------NGGL--I-YCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (238)
Q Consensus 61 ~~l~~~~l~~------~~~~--~-~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (238)
++++..++.+ .|-. . ..-..+++|++ .+|||++.. +|+++||||||+ ||+.+.+.+. +.++++.
T Consensus 573 ~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~--~p~iliLDE~Ts~LD~~te~~i~-~~l~~~~- 648 (694)
T TIGR03375 573 RAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLR--DPPILLLDEPTSAMDNRSEERFK-DRLKRWL- 648 (694)
T ss_pred HHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHH-HHHHHHh-
Confidence 4455544421 1100 0 00023555543 899999999 999999999999 9999999999 7777774
Q ss_pred CCCeEEEEEecccccccchhHHHhhhHH
Q 026486 129 RNFNVCAVYLLDSQFITDVTKFISGCMA 156 (238)
Q Consensus 129 ~~~tvi~v~l~d~~~~~d~~~~~~~~l~ 156 (238)
.++|+++| +|..+.. ..++.+++
T Consensus 649 ~~~T~iiI----tHrl~~~-~~~D~iiv 671 (694)
T TIGR03375 649 AGKTLVLV----THRTSLL-DLVDRIIV 671 (694)
T ss_pred CCCEEEEE----ecCHHHH-HhCCEEEE
Confidence 47888888 4777533 33444433
No 299
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.84 E-value=2.8e-21 Score=184.32 Aligned_cols=135 Identities=20% Similarity=0.241 Sum_probs=101.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-------CCCCC-CC-----CCChhhhhh----------HH
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------LE 60 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~-----~~~i~~~i~----------~~ 60 (238)
.++|+||||||||||+++|+|+++|++|+|.++|.+... +.++| +| +-+++|++. +.
T Consensus 368 ~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~ 447 (574)
T PRK11160 368 KVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALI 447 (574)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHH
Confidence 689999999999999999999999999999999987643 23444 32 336888774 55
Q ss_pred HHHHHcCCCCCCc----hhh----hHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC
Q 026486 61 DVMEELGLGPNGG----LIY----CMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR 129 (238)
Q Consensus 61 ~~l~~~~l~~~~~----~~~----~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~ 129 (238)
++++..++.+.-. ... .-..++++++ ++|||++.. +|+++|+||||+ +|+.+...+. +.++++. +
T Consensus 448 ~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~--~~~ililDE~ts~lD~~t~~~i~-~~l~~~~-~ 523 (574)
T PRK11160 448 EVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLH--DAPLLLLDEPTEGLDAETERQIL-ELLAEHA-Q 523 (574)
T ss_pred HHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHc-C
Confidence 6677777653100 000 0123555543 899999999 999999999999 9999999988 7777774 4
Q ss_pred CCeEEEEEecccccccc
Q 026486 130 NFNVCAVYLLDSQFITD 146 (238)
Q Consensus 130 ~~tvi~v~l~d~~~~~d 146 (238)
++|++++ +|..+.
T Consensus 524 ~~tviii----tHr~~~ 536 (574)
T PRK11160 524 NKTVLMI----THRLTG 536 (574)
T ss_pred CCEEEEE----ecChhH
Confidence 7888877 477653
No 300
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.84 E-value=7.5e-21 Score=179.54 Aligned_cols=129 Identities=21% Similarity=0.246 Sum_probs=96.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC------CCCCC-CC-----CCChhhhhh----------HHH
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-PV-----AMDIRELIS----------LED 61 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~------~~~~~-~~-----~~~i~~~i~----------~~~ 61 (238)
.++|+||+|||||||+++|+|+++|++|+|.++|.|... +.++| +| +-|++|++. +.+
T Consensus 363 ~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~ 442 (529)
T TIGR02868 363 RVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWA 442 (529)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHH
Confidence 589999999999999999999999999999999987642 24455 33 336888875 445
Q ss_pred HHHHcCCCC------CCchhhh----HHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 026486 62 VMEELGLGP------NGGLIYC----MEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (238)
Q Consensus 62 ~l~~~~l~~------~~~~~~~----~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (238)
+++..++.. +| .... -..+++|++ .+|||++.. +|+++||||||+ ||..+.+.+. +.++++ .
T Consensus 443 al~~a~l~~~i~~lp~G-ldT~ige~G~~LSGGQrQRiaiARall~--~~~iliLDE~TSaLD~~te~~I~-~~l~~~-~ 517 (529)
T TIGR02868 443 ALERVGLADWLRSLPDG-LDTVLGEGGARLSGGERQRLALARALLA--DAPILLLDEPTEHLDAGTESELL-EDLLAA-L 517 (529)
T ss_pred HHHHcCCHHHHHhCccc-ccchhccccCcCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHh-c
Confidence 666655532 11 0000 023555543 899999999 999999999999 9999999988 666665 3
Q ss_pred CCCeEEEEE
Q 026486 129 RNFNVCAVY 137 (238)
Q Consensus 129 ~~~tvi~v~ 137 (238)
+++|+|+|.
T Consensus 518 ~~~TvIiIt 526 (529)
T TIGR02868 518 SGKTVVVIT 526 (529)
T ss_pred CCCEEEEEe
Confidence 578888873
No 301
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=4.9e-20 Score=149.60 Aligned_cols=128 Identities=14% Similarity=0.059 Sum_probs=98.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCCCC-------------CCCCCCCChhhhhh------------
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAEN-------------FDYPVAMDIRELIS------------ 58 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~-------------~~~~~~~~i~~~i~------------ 58 (238)
++.|.||||||||||+|+++|+++|++|+|++.|..+.... .+..+.+|++|++.
T Consensus 30 ~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~~~~~ 109 (209)
T COG4133 30 ALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTALENLHFWQRFHGSGNAA 109 (209)
T ss_pred EEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhhccccccchhhHHHHHHHHHHHhCCCchh
Confidence 56799999999999999999999999999999987654321 12234667777765
Q ss_pred -HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEE
Q 026486 59 -LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVC 134 (238)
Q Consensus 59 -~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~tvi 134 (238)
+.++++.+||........ .+++.+++ ++|||-++. .++++|+|||++ ||......+- .++..-..+|.-|+
T Consensus 110 ~i~~Al~~vgL~g~~dlp~--~~LSAGQqRRvAlArL~ls--~~pLWiLDEP~taLDk~g~a~l~-~l~~~H~~~GGiVl 184 (209)
T COG4133 110 TIWEALAQVGLAGLEDLPV--GQLSAGQQRRVALARLWLS--PAPLWILDEPFTALDKEGVALLT-ALMAAHAAQGGIVL 184 (209)
T ss_pred hHHHHHHHcCcccccccch--hhcchhHHHHHHHHHHHcC--CCCceeecCcccccCHHHHHHHH-HHHHHHhcCCCEEE
Confidence 778899999987654443 35666654 999999999 999999999998 9999998777 66666555554444
Q ss_pred EE
Q 026486 135 AV 136 (238)
Q Consensus 135 ~v 136 (238)
..
T Consensus 185 lt 186 (209)
T COG4133 185 LT 186 (209)
T ss_pred Ee
Confidence 33
No 302
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.84 E-value=7.1e-21 Score=155.73 Aligned_cols=128 Identities=18% Similarity=0.184 Sum_probs=93.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC--CCCCCCCCCChhhhhhHHHHHHHcCCCCC-CchhhhHH
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--ENFDYPVAMDIRELISLEDVMEELGLGPN-GGLIYCME 79 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~--~~~~~~~~~~i~~~i~~~~~l~~~~l~~~-~~~~~~~~ 79 (238)
-+++|+||||||||||++++.+ ++|++.+.+..+.. +.+.|. .+ .++++.+++++. .... ..
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il~----~~G~v~~~~~~~~~~~~~~~~~-----~q----~~~l~~~~L~~~~~~~~--~~ 86 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGLY----ASGKARLISFLPKFSRNKLIFI-----DQ----LQFLIDVGLGYLTLGQK--LS 86 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHhh----cCCcEEECCcccccccccEEEE-----hH----HHHHHHcCCCccccCCC--cC
Confidence 3689999999999999999853 68999987654321 112221 11 578899998753 1111 12
Q ss_pred hhhhhHH--HHHHHHHhccCC--CCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccchhHHHhh
Q 026486 80 HLEDNLD--DWLAEELDNYLD--DDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG 153 (238)
Q Consensus 80 ~~~~~~s--~~la~~l~~~~~--p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~ 153 (238)
.++++++ +++|++++. + |+++|+|||++ ||+.++..+. +.+++++++|.++|+++ |..... .+++.
T Consensus 87 ~LSgGq~qrl~laral~~--~~~p~llLlDEPt~~LD~~~~~~l~-~~l~~~~~~g~tvIivS----H~~~~~-~~~d~ 157 (176)
T cd03238 87 TLSGGELQRVKLASELFS--EPPGTLFILDEPSTGLHQQDINQLL-EVIKGLIDLGNTVILIE----HNLDVL-SSADW 157 (176)
T ss_pred cCCHHHHHHHHHHHHHhh--CCCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHhCCCEEEEEe----CCHHHH-HhCCE
Confidence 3545443 899999999 9 99999999999 9999999999 88888876788988884 666543 34443
No 303
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.84 E-value=3.3e-21 Score=166.43 Aligned_cols=136 Identities=17% Similarity=0.151 Sum_probs=92.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-------CCCCC-CC-----CCChhhhhh---------HH
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS---------LE 60 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~-----~~~i~~~i~---------~~ 60 (238)
-+++|+|+||||||||+++|+|+++|++|+|.++|.++.. ..++| ++ ..++++++. +.
T Consensus 48 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~ 127 (257)
T cd03288 48 QKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLW 127 (257)
T ss_pred CEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhhEEEECCCCcccccHHHHhcCcCCCCCHHHHH
Confidence 3689999999999999999999999999999999976531 12233 11 113333321 22
Q ss_pred HHHHHcCCCC-----------CCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 026486 61 DVMEELGLGP-----------NGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (238)
Q Consensus 61 ~~l~~~~l~~-----------~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l 126 (238)
++++..++.. .... ....++++++ +.||++++. +|+++|+||||+ ||+.++..++ ++++++
T Consensus 128 ~~l~~~~l~~~~~~~~~~l~~~~~~--~~~~LS~G~~qrl~laral~~--~p~llllDEPt~gLD~~~~~~l~-~~l~~~ 202 (257)
T cd03288 128 EALEIAQLKNMVKSLPGGLDAVVTE--GGENFSVGQRQLFCLARAFVR--KSSILIMDEATASIDMATENILQ-KVVMTA 202 (257)
T ss_pred HHHHHhCcHHHHhhcccccCcEecc--CCCcCCHHHHHHHHHHHHHhc--CCCEEEEeCCccCCCHHHHHHHH-HHHHHh
Confidence 3333333321 1000 0123444433 899999999 999999999999 9999998888 888887
Q ss_pred HhCCCeEEEEEecccccccchh
Q 026486 127 KSRNFNVCAVYLLDSQFITDVT 148 (238)
Q Consensus 127 ~~~~~tvi~v~l~d~~~~~d~~ 148 (238)
. ++.+++++ +|......
T Consensus 203 ~-~~~tiii~----sh~~~~~~ 219 (257)
T cd03288 203 F-ADRTVVTI----AHRVSTIL 219 (257)
T ss_pred c-CCCEEEEE----ecChHHHH
Confidence 4 47788777 47665443
No 304
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.84 E-value=1.2e-20 Score=151.05 Aligned_cols=121 Identities=22% Similarity=0.232 Sum_probs=89.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCCCCCCCCCCCChhhhhhHHHHHHHcCCCCCCchhhhHHhhh
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~~~ 82 (238)
-+++|+||||||||||+++|+|.+++.+|+|+++|.+..... ..+.....++-+. ++
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~--------------~~~~~~~i~~~~q---------lS 82 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLP--------------LEELRRRIGYVPQ---------LS 82 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCC--------------HHHHHhceEEEee---------CC
Confidence 468999999999999999999999999999999987543210 0001111111110 22
Q ss_pred hhH--HHHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccchhHHHhh
Q 026486 83 DNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG 153 (238)
Q Consensus 83 ~~~--s~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~ 153 (238)
++. ++.+|++++. +|+++++|||++ +|..++..+. ++++++.+.+.+++++ +|...+...+++.
T Consensus 83 ~G~~~r~~l~~~l~~--~~~i~ilDEp~~~lD~~~~~~l~-~~l~~~~~~~~tii~~----sh~~~~~~~~~d~ 149 (157)
T cd00267 83 GGQRQRVALARALLL--NPDLLLLDEPTSGLDPASRERLL-ELLRELAEEGRTVIIV----THDPELAELAADR 149 (157)
T ss_pred HHHHHHHHHHHHHhc--CCCEEEEeCCCcCCCHHHHHHHH-HHHHHHHHCCCEEEEE----eCCHHHHHHhCCE
Confidence 332 3889999999 999999999999 9999999988 8888886666777766 4777766665443
No 305
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=3.6e-21 Score=181.94 Aligned_cols=142 Identities=15% Similarity=0.161 Sum_probs=102.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecC-C--CCCC--CCCCCCChhhhhh-----------HHHHHHHc
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP-A--AENF--DYPVAMDIRELIS-----------LEDVMEEL 66 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~-~--~~~~--~~~~~~~i~~~i~-----------~~~~l~~~ 66 (238)
-+++|+||||||||||+++|+|+++|++|+|.+.+... + .+.. .+++..++++++. +.++++.+
T Consensus 346 e~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~ 425 (530)
T PRK15064 346 ERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRL 425 (530)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHc
Confidence 36899999999999999999999999999999876321 0 1111 1233445655442 45678888
Q ss_pred CCCC-CCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEEecccc
Q 026486 67 GLGP-NGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQ 142 (238)
Q Consensus 67 ~l~~-~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~tvi~v~l~d~~ 142 (238)
++.. ... .....+++|++ ++||++++. +|+++|+||||+ ||+.++..+. ++++++ +.++|++ ||
T Consensus 426 ~l~~~~~~--~~~~~LSgGq~qrv~la~al~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~~---~~tvi~v----sH 493 (530)
T PRK15064 426 LFSQDDIK--KSVKVLSGGEKGRMLFGKLMMQ--KPNVLVMDEPTNHMDMESIESLN-MALEKY---EGTLIFV----SH 493 (530)
T ss_pred CCChhHhc--CcccccCHHHHHHHHHHHHHhc--CCCEEEEcCCCCCCCHHHHHHHH-HHHHHC---CCEEEEE----eC
Confidence 8842 211 11245666654 899999999 999999999999 9999998888 777765 3477777 48
Q ss_pred cccchhHHHhhhHH
Q 026486 143 FITDVTKFISGCMA 156 (238)
Q Consensus 143 ~~~d~~~~~~~~l~ 156 (238)
.......+++.++.
T Consensus 494 d~~~~~~~~d~i~~ 507 (530)
T PRK15064 494 DREFVSSLATRIIE 507 (530)
T ss_pred CHHHHHHhCCEEEE
Confidence 77766666664443
No 306
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.84 E-value=3.7e-21 Score=183.10 Aligned_cols=136 Identities=20% Similarity=0.268 Sum_probs=98.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-------CCCCC-CC-----CCChhhhhh----------HH
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------LE 60 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~-----~~~i~~~i~----------~~ 60 (238)
.++|+||+||||||+++.|.++++|++|+|.++|.|... +.++| +| +-|+++++. +.
T Consensus 357 ~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~ 436 (567)
T COG1132 357 KVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIE 436 (567)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCCCCCHHHHH
Confidence 579999999999999999999999999999999988753 34454 33 236787775 22
Q ss_pred HHHH---------Hc--CCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 026486 61 DVME---------EL--GLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (238)
Q Consensus 61 ~~l~---------~~--~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l 126 (238)
++++ .+ |++..-+.. -..+++|++ .+|||++.. +|++++|||||+ +|..+...+. +.++++
T Consensus 437 ~a~k~a~~~d~I~~lp~g~dt~vge~--G~~LSgGQrQrlaiARall~--~~~ILILDEaTSalD~~tE~~I~-~~l~~l 511 (567)
T COG1132 437 EALKLANAHEFIANLPDGYDTIVGER--GVNLSGGQRQRLAIARALLR--NPPILILDEATSALDTETEALIQ-DALKKL 511 (567)
T ss_pred HHHHHhChHHHHHhCcccccceecCC--CccCCHHHHHHHHHHHHHhc--CCCEEEEeccccccCHHhHHHHH-HHHHHH
Confidence 2333 32 222110000 023555544 899999999 999999999998 9999999998 777777
Q ss_pred HhCCCeEEEEEecccccccchhH
Q 026486 127 KSRNFNVCAVYLLDSQFITDVTK 149 (238)
Q Consensus 127 ~~~~~tvi~v~l~d~~~~~d~~~ 149 (238)
. +++|+++| +|.++....
T Consensus 512 ~-~~rT~iiI----aHRlsti~~ 529 (567)
T COG1132 512 L-KGRTTLII----AHRLSTIKN 529 (567)
T ss_pred h-cCCEEEEE----eccHhHHHh
Confidence 5 45677777 588764444
No 307
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.84 E-value=1.7e-21 Score=189.77 Aligned_cols=133 Identities=18% Similarity=0.193 Sum_probs=95.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-------CCCCC-CC-----CCChhhhhh-----------H
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS-----------L 59 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~-----~~~i~~~i~-----------~ 59 (238)
.++|+||||||||||+++|+|+++|++|+|.++|.|... +.++| +| +-|++|++. +
T Consensus 502 ~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i 581 (708)
T TIGR01193 502 KTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEI 581 (708)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHH
Confidence 589999999999999999999999999999999987632 23454 33 235666664 2
Q ss_pred HHHHHHcCCCC------CCc--hh-hhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 026486 60 EDVMEELGLGP------NGG--LI-YCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (238)
Q Consensus 60 ~~~l~~~~l~~------~~~--~~-~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~ 127 (238)
.++++..++.. .|- .+ ..-..+++|++ ++|||++.. +|+++||||||+ ||..+.+.+. +.++++
T Consensus 582 ~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~--~p~iliLDE~Ts~LD~~te~~i~-~~L~~~- 657 (708)
T TIGR01193 582 WAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLT--DSKVLILDESTSNLDTITEKKIV-NNLLNL- 657 (708)
T ss_pred HHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhh--CCCEEEEeCccccCCHHHHHHHH-HHHHHh-
Confidence 33444444421 110 00 00023555544 899999999 999999999999 9999999988 666665
Q ss_pred hCCCeEEEEEeccccccc
Q 026486 128 SRNFNVCAVYLLDSQFIT 145 (238)
Q Consensus 128 ~~~~tvi~v~l~d~~~~~ 145 (238)
.++|+|+| +|..+
T Consensus 658 -~~~T~Iii----tHr~~ 670 (708)
T TIGR01193 658 -QDKTIIFV----AHRLS 670 (708)
T ss_pred -cCCEEEEE----ecchH
Confidence 46788777 47764
No 308
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=5.2e-21 Score=177.41 Aligned_cols=154 Identities=21% Similarity=0.258 Sum_probs=110.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-------CCCCC------CCCCChhhhhh----------HH
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY------PVAMDIRELIS----------LE 60 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~------~~~~~i~~~i~----------~~ 60 (238)
.++|+|+||||||||++.|+|+++|++|+|.++|.+..+ +++.| -..-+++||+. +.
T Consensus 349 ~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~ 428 (559)
T COG4988 349 LTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEII 428 (559)
T ss_pred EEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHH
Confidence 479999999999999999999999999999999987643 22333 22347888884 56
Q ss_pred HHHHHcCCCCC----CchhhhHH----hhhhhH--HHHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC
Q 026486 61 DVMEELGLGPN----GGLIYCME----HLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR 129 (238)
Q Consensus 61 ~~l~~~~l~~~----~~~~~~~~----~~~~~~--s~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~ 129 (238)
+++++.|+.+. .+.-.... -+++|+ ++++||++.. +++++++||||+ ||.++.+.+. +.+.++.+
T Consensus 429 ~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~--~~~l~llDEpTA~LD~etE~~i~-~~l~~l~~- 504 (559)
T COG4988 429 AALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLS--PASLLLLDEPTAHLDAETEQIIL-QALQELAK- 504 (559)
T ss_pred HHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcC--CCCEEEecCCccCCCHhHHHHHH-HHHHHHHh-
Confidence 66776665421 11111111 133433 4999999999 999999999999 9999999988 88888865
Q ss_pred CCeEEEEEecccccccchhHHHhhhHHHHHHHHhhcCCeeeeecccccccch
Q 026486 130 NFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNK 181 (238)
Q Consensus 130 ~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~~~p~~~vlsk~dll~~~ 181 (238)
++|+++++ |...+..+ ...|.|+.+.-+....
T Consensus 505 ~ktvl~it----Hrl~~~~~----------------~D~I~vld~G~l~~~g 536 (559)
T COG4988 505 QKTVLVIT----HRLEDAAD----------------ADRIVVLDNGRLVEQG 536 (559)
T ss_pred CCeEEEEE----cChHHHhc----------------CCEEEEecCCceeccC
Confidence 57888884 77653332 2356666666555443
No 309
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.83 E-value=1.3e-20 Score=181.17 Aligned_cols=161 Identities=17% Similarity=0.198 Sum_probs=122.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCC---CceEEEeeecCCC----CCCCC-------CCCCChhhhhh-----------
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETV---RRTMHIVNLDPAA----ENFDY-------PVAMDIRELIS----------- 58 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~---~G~i~i~~~d~~~----~~~~~-------~~~~~i~~~i~----------- 58 (238)
.++|+||||||||||+++|+|..++. +|+|.++|.+... +.++| .+..|++|++.
T Consensus 53 ~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~ 132 (617)
T TIGR00955 53 LLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRV 132 (617)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcHHHHHHHHHhcCCCCCC
Confidence 68999999999999999999998874 7999999987531 22344 33567877663
Q ss_pred --------HHHHHHHcCCCCCCchhhhH----HhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHH
Q 026486 59 --------LEDVMEELGLGPNGGLIYCM----EHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV 123 (238)
Q Consensus 59 --------~~~~l~~~~l~~~~~~~~~~----~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll 123 (238)
++++++.+|+.+.......- ..++++++ +.||+++.. +|+++++||||+ ||..+...++ +.+
T Consensus 133 ~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~--~p~vlllDEPtsgLD~~~~~~l~-~~L 209 (617)
T TIGR00955 133 TKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLT--DPPLLFCDEPTSGLDSFMAYSVV-QVL 209 (617)
T ss_pred CHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHc--CCCEEEeeCCCcchhHHHHHHHH-HHH
Confidence 67788889987643222210 12455543 999999999 999999999999 9999999999 889
Q ss_pred HHHHhCCCeEEEEEeccccccc-chhHHHhhhHHHHHHHHhhcCCeeee
Q 026486 124 DHLKSRNFNVCAVYLLDSQFIT-DVTKFISGCMASLSAMVQLELPHVNI 171 (238)
Q Consensus 124 ~~l~~~~~tvi~v~l~d~~~~~-d~~~~~~~~l~~~~~~~~~~~p~~~v 171 (238)
+++++.|.|+|++ +|... +...+++.+++...|.+....|.-++
T Consensus 210 ~~l~~~g~tvi~~----~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~ 254 (617)
T TIGR00955 210 KGLAQKGKTIICT----IHQPSSELFELFDKIILMAEGRVAYLGSPDQA 254 (617)
T ss_pred HHHHhCCCEEEEE----eCCCCHHHHHHhceEEEeeCCeEEEECCHHHH
Confidence 9998778888766 47664 56677888877777777777776444
No 310
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.83 E-value=9e-21 Score=184.42 Aligned_cols=144 Identities=18% Similarity=0.184 Sum_probs=101.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-------CCCCC-CC-----CCChhhhhh----------HH
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------LE 60 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~-----~~~i~~~i~----------~~ 60 (238)
.++|+|+||||||||+++|+|+++|++|+|.++|.+... +.++| +| +-+++|++. +.
T Consensus 485 ~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~ 564 (694)
T TIGR01846 485 FIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVI 564 (694)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHH
Confidence 589999999999999999999999999999999988643 23444 33 236777765 33
Q ss_pred HHHHHcCCCC------CCch---hhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 026486 61 DVMEELGLGP------NGGL---IYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (238)
Q Consensus 61 ~~l~~~~l~~------~~~~---~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (238)
++++..++.. +|-. -..-..+++|++ ++|||++.. +|+++|+||||+ ||+.+.+.++ +.++++.
T Consensus 565 ~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~--~~~ililDEpts~LD~~~~~~i~-~~l~~~~- 640 (694)
T TIGR01846 565 HAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVG--NPRILIFDEATSALDYESEALIM-RNMREIC- 640 (694)
T ss_pred HHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHh--CCCEEEEECCCcCCCHHHHHHHH-HHHHHHh-
Confidence 3444444321 1000 000123555543 899999999 999999999999 9999999999 7788774
Q ss_pred CCCeEEEEEecccccccchhHHHhhhHH
Q 026486 129 RNFNVCAVYLLDSQFITDVTKFISGCMA 156 (238)
Q Consensus 129 ~~~tvi~v~l~d~~~~~d~~~~~~~~l~ 156 (238)
.+.|+|++ +|..+.... ++.+++
T Consensus 641 ~~~t~i~i----tH~~~~~~~-~d~ii~ 663 (694)
T TIGR01846 641 RGRTVIII----AHRLSTVRA-CDRIIV 663 (694)
T ss_pred CCCEEEEE----eCChHHHHh-CCEEEE
Confidence 57888877 477654332 444433
No 311
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.83 E-value=1.6e-20 Score=164.35 Aligned_cols=149 Identities=17% Similarity=0.125 Sum_probs=94.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecC-CCCCCCCCCCCChhhhhh---------HHHHHHHcCCCCC--
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP-AAENFDYPVAMDIRELIS---------LEDVMEELGLGPN-- 71 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~-~~~~~~~~~~~~i~~~i~---------~~~~l~~~~l~~~-- 71 (238)
+++|+||||||||||+++|+|+++|++|+|.++|.-- ..+...+.+ .++++++. +.+.++.+++.+.
T Consensus 65 ~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g~i~yv~q~~~l~~-~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~ 143 (282)
T cd03291 65 MLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSWIMP-GTIKENIIFGVSYDEYRYKSVVKACQLEEDIT 143 (282)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEEEEeCcccccc-cCHHHHhhcccccCHHHHHHHHHHhCCHHHHH
Confidence 6899999999999999999999999999999876210 001111112 25555532 1333444444211
Q ss_pred ----Cc---hhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEEeccc
Q 026486 72 ----GG---LIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDS 141 (238)
Q Consensus 72 ----~~---~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~tvi~v~l~d~ 141 (238)
+. .......++++++ +.||++++. +|+++|+|||++ ||+.++..++..+++.+. ++.+++++ +
T Consensus 144 ~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~--~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~~~tIiii----s 216 (282)
T cd03291 144 KFPEKDNTVLGEGGITLSGGQRARISLARAVYK--DADLYLLDSPFGYLDVFTEKEIFESCVCKLM-ANKTRILV----T 216 (282)
T ss_pred hccccccceecCCCCcCCHHHHHHHHHHHHHhc--CCCEEEEECCCccCCHHHHHHHHHHHHHHhh-CCCEEEEE----e
Confidence 00 0000123444443 899999999 999999999999 999999888833456664 46777777 4
Q ss_pred ccccchhHHHhhhHHHHHHH
Q 026486 142 QFITDVTKFISGCMASLSAM 161 (238)
Q Consensus 142 ~~~~d~~~~~~~~l~~~~~~ 161 (238)
|..... ..++.+++...+.
T Consensus 217 H~~~~~-~~~d~i~~l~~G~ 235 (282)
T cd03291 217 SKMEHL-KKADKILILHEGS 235 (282)
T ss_pred CChHHH-HhCCEEEEEECCE
Confidence 666543 2444444433333
No 312
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.83 E-value=4.6e-20 Score=173.19 Aligned_cols=135 Identities=19% Similarity=0.188 Sum_probs=93.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeee-cCC--CCCCCCCCCCChhhhhh---------------------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL-DPA--AENFDYPVAMDIRELIS--------------------- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~-d~~--~~~~~~~~~~~i~~~i~--------------------- 58 (238)
-.+||||+||+|||||+|+|+|...|++|+|...+- .++ .+..+.....++.+.+.
T Consensus 30 ~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~ 109 (530)
T COG0488 30 ERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLA 109 (530)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcc
Confidence 368999999999999999999999999999988652 111 12222222223333221
Q ss_pred -------------------------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-c
Q 026486 59 -------------------------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-I 110 (238)
Q Consensus 59 -------------------------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-L 110 (238)
+..++..+|+.+. ...+..++++.+ ++||++|.. +|++|+|||||+ |
T Consensus 110 ~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~---~~~~~~LSGG~r~Rv~LA~aL~~--~pDlLLLDEPTNHL 184 (530)
T COG0488 110 DPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE---DRPVSSLSGGWRRRVALARALLE--EPDLLLLDEPTNHL 184 (530)
T ss_pred cchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc---cCchhhcCHHHHHHHHHHHHHhc--CCCEEEEcCCCccc
Confidence 3344555556553 223456777765 999999999 999999999999 9
Q ss_pred cHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccch
Q 026486 111 ELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDV 147 (238)
Q Consensus 111 D~~~~~~~~~~ll~~l~~~~~tvi~v~l~d~~~~~d~ 147 (238)
|..+...+- +.+.+. .| ++|+|+ ||-+++..+
T Consensus 185 D~~~i~WLe-~~L~~~--~g-tviiVS-HDR~FLd~V 216 (530)
T COG0488 185 DLESIEWLE-DYLKRY--PG-TVIVVS-HDRYFLDNV 216 (530)
T ss_pred CHHHHHHHH-HHHHhC--CC-cEEEEe-CCHHHHHHH
Confidence 999986665 555543 45 888884 776666543
No 313
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.82 E-value=1.2e-20 Score=180.32 Aligned_cols=136 Identities=21% Similarity=0.238 Sum_probs=95.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-------CCCCC-CC-----CCChhhhhh----------HH
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------LE 60 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~-----~~~i~~~i~----------~~ 60 (238)
.++|+||||||||||+++|+|+++|++|+|.++|.+... +.++| +| +-++++++. +.
T Consensus 363 ~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~ 442 (585)
T TIGR01192 363 TVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVY 442 (585)
T ss_pred EEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHH
Confidence 579999999999999999999999999999999986532 22333 22 336777764 22
Q ss_pred HHHHHcCCCC------CCc---hhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 026486 61 DVMEELGLGP------NGG---LIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (238)
Q Consensus 61 ~~l~~~~l~~------~~~---~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (238)
++++..++.. .+- .-..-..+++|++ ++|||++.. +|+++|+||||+ ||..+.+.+. +.++++.
T Consensus 443 ~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~--~p~ililDEpts~LD~~~~~~i~-~~l~~~~- 518 (585)
T TIGR01192 443 EAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILK--NAPILVLDEATSALDVETEARVK-NAIDALR- 518 (585)
T ss_pred HHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEECCccCCCHHHHHHHH-HHHHHHh-
Confidence 2333322211 100 0000123555543 899999999 999999999999 9999999998 8787774
Q ss_pred CCCeEEEEEecccccccch
Q 026486 129 RNFNVCAVYLLDSQFITDV 147 (238)
Q Consensus 129 ~~~tvi~v~l~d~~~~~d~ 147 (238)
.+.|+|+| +|..+..
T Consensus 519 ~~~tvI~i----sH~~~~~ 533 (585)
T TIGR01192 519 KNRTTFII----AHRLSTV 533 (585)
T ss_pred CCCEEEEE----EcChHHH
Confidence 47888887 4776433
No 314
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=2.1e-20 Score=180.20 Aligned_cols=148 Identities=14% Similarity=0.096 Sum_probs=102.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEee-ecCC--CC-CCC-CCCCCChhhhh----------hHHHHHHHcC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN-LDPA--AE-NFD-YPVAMDIRELI----------SLEDVMEELG 67 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~-~d~~--~~-~~~-~~~~~~i~~~i----------~~~~~l~~~~ 67 (238)
-+++|+||||||||||+++|+|.++|++|+|.+.+ ..++ .+ ... ..+..++.+.+ .+.++++.++
T Consensus 339 e~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~ 418 (638)
T PRK10636 339 SRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGGFG 418 (638)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEecCcchhhCCccchHHHHHHHhCchhhHHHHHHHHHHcC
Confidence 36899999999999999999999999999999853 1111 01 001 11222333322 2567888888
Q ss_pred CCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEEecccccc
Q 026486 68 LGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFI 144 (238)
Q Consensus 68 l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~tvi~v~l~d~~~~ 144 (238)
+.+... ......+++|.+ ++||++++. +|++|||||||+ ||+.++..+. ++++++ +.|+|+| ||..
T Consensus 419 l~~~~~-~~~~~~LSgGekqRl~La~~l~~--~p~lLlLDEPt~~LD~~~~~~l~-~~L~~~---~gtvi~v----SHd~ 487 (638)
T PRK10636 419 FQGDKV-TEETRRFSGGEKARLVLALIVWQ--RPNLLLLDEPTNHLDLDMRQALT-EALIDF---EGALVVV----SHDR 487 (638)
T ss_pred CChhHh-cCchhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCCCCCCHHHHHHHH-HHHHHc---CCeEEEE----eCCH
Confidence 854211 112345666654 899999999 999999999999 9999999988 888776 2478777 3666
Q ss_pred cchhHHHhhhHHHHHHH
Q 026486 145 TDVTKFISGCMASLSAM 161 (238)
Q Consensus 145 ~d~~~~~~~~l~~~~~~ 161 (238)
.....+++.+++...+.
T Consensus 488 ~~~~~~~d~i~~l~~G~ 504 (638)
T PRK10636 488 HLLRSTTDDLYLVHDGK 504 (638)
T ss_pred HHHHHhCCEEEEEECCE
Confidence 65566666655544443
No 315
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.82 E-value=3.2e-20 Score=179.24 Aligned_cols=160 Identities=18% Similarity=0.214 Sum_probs=119.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-----------CCCCC-------CCCCChhhhhh------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-------PVAMDIRELIS------ 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-----------~~~~~-------~~~~~i~~~i~------ 58 (238)
-+++|+||||||||||+++|+|+++|++|++.++|.++.. ..+.| ++..++.+++.
T Consensus 35 e~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~ 114 (648)
T PRK10535 35 EMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYA 114 (648)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHc
Confidence 3689999999999999999999999999999999987532 22333 22345555442
Q ss_pred ----------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 026486 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (238)
Q Consensus 59 ----------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~ 125 (238)
+.++++.+|+.+..... ...++++++ ++||++++. +|+++++|||+. ||+.+++.+. +++++
T Consensus 115 ~~~~~~~~~~~~~~l~~lgl~~~~~~~--~~~LS~Gq~qrv~LAraL~~--~P~lLllDEP~~gLD~~s~~~l~-~ll~~ 189 (648)
T PRK10535 115 GLERKQRLLRAQELLQRLGLEDRVEYQ--PSQLSGGQQQRVSIARALMN--GGQVILADEPTGALDSHSGEEVM-AILHQ 189 (648)
T ss_pred CCCHHHHHHHHHHHHHHCCChhhhcCC--cccCCHHHHHHHHHHHHHhc--CCCEEEEECCCCCCCHHHHHHHH-HHHHH
Confidence 45667778876532111 124555443 899999999 999999999999 9999999999 99999
Q ss_pred HHhCCCeEEEEEecccccccchhHHHhhhHHHHHHHHhhcCCeeeee
Q 026486 126 LKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNIL 172 (238)
Q Consensus 126 l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~~~p~~~vl 172 (238)
++++|.+++++ +|....+ ..++.++....+.+....+.-+..
T Consensus 190 l~~~g~tiliv----sH~~~~~-~~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 190 LRDRGHTVIIV----THDPQVA-AQAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred HHhcCCEEEEE----CCCHHHH-HhCCEEEEEECCEEEeecCccccc
Confidence 87678888777 4777655 457888777777777666665443
No 316
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.82 E-value=6.7e-20 Score=174.25 Aligned_cols=143 Identities=17% Similarity=0.067 Sum_probs=99.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeec-CC--CCCCCCCCCCChhhhhh---------------------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-PA--AENFDYPVAMDIRELIS--------------------- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d-~~--~~~~~~~~~~~i~~~i~--------------------- 58 (238)
-+++|+||||||||||+++|+|+++|++|+|.+.+.. .+ .+...+.+..++.+++.
T Consensus 34 e~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~ 113 (556)
T PRK11819 34 AKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYA 113 (556)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhc
Confidence 3689999999999999999999999999999986421 10 01112223345555543
Q ss_pred -------------------------------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEe
Q 026486 59 -------------------------------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFD 105 (238)
Q Consensus 59 -------------------------------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilD 105 (238)
+.++++.+|+.. . ......+++|++ +.||++++. +|+++|||
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~--~~~~~~LSgGqkqrv~la~al~~--~p~vlLLD 188 (556)
T PRK11819 114 EPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPP-W--DAKVTKLSGGERRRVALCRLLLE--KPDMLLLD 188 (556)
T ss_pred cCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCc-c--cCchhhcCHHHHHHHHHHHHHhC--CCCEEEEc
Confidence 222344555532 1 112345666654 999999999 99999999
Q ss_pred CCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccchhHHHhhhHHHH
Q 026486 106 CPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASL 158 (238)
Q Consensus 106 EPt~-LD~~~~~~~~~~ll~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~ 158 (238)
|||+ ||+.++..+. ++++++ +.++|+| +|.......+++.++...
T Consensus 189 EPt~~LD~~~~~~l~-~~L~~~---~~tviii----sHd~~~~~~~~d~i~~l~ 234 (556)
T PRK11819 189 EPTNHLDAESVAWLE-QFLHDY---PGTVVAV----THDRYFLDNVAGWILELD 234 (556)
T ss_pred CCCCcCChHHHHHHH-HHHHhC---CCeEEEE----eCCHHHHHhhcCeEEEEe
Confidence 9999 9999999888 777776 2477777 487777777666554433
No 317
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.82 E-value=5.8e-20 Score=174.54 Aligned_cols=140 Identities=17% Similarity=0.141 Sum_probs=100.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecC--C--CCCC-CCCCCCChhhhhh--------------HHHHH
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP--A--AENF-DYPVAMDIRELIS--------------LEDVM 63 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~--~--~~~~-~~~~~~~i~~~i~--------------~~~~l 63 (238)
-+++|+||||||||||+++|+|+++|++|+|.+.+ +. + .+.. .+.+..++.+++. ..+++
T Consensus 349 e~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l 427 (552)
T TIGR03719 349 GIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-TVKLAYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYV 427 (552)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-ceEEEEEeCCccccCCCCcHHHHHHhhccccccCcchHHHHHHH
Confidence 36899999999999999999999999999998843 21 0 0111 1223345555442 34578
Q ss_pred HHcCCCCC-CchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEEec
Q 026486 64 EELGLGPN-GGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLL 139 (238)
Q Consensus 64 ~~~~l~~~-~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~tvi~v~l~ 139 (238)
+.+++... ... ....+++|++ ++||++++. +|+++|+||||+ ||+.++..++ ++++++. + ++|++
T Consensus 428 ~~~~l~~~~~~~--~~~~LSgGe~qrv~la~al~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~--~-~viiv--- 496 (552)
T TIGR03719 428 GRFNFKGSDQQK--KVGQLSGGERNRVHLAKTLKS--GGNVLLLDEPTNDLDVETLRALE-EALLEFA--G-CAVVI--- 496 (552)
T ss_pred HhCCCChhHhcC--chhhCCHHHHHHHHHHHHHhh--CCCEEEEeCCCCCCCHHHHHHHH-HHHHHCC--C-eEEEE---
Confidence 88888532 111 1245666654 899999999 999999999999 9999999998 8888772 3 67666
Q ss_pred ccccccchhHHHhhhH
Q 026486 140 DSQFITDVTKFISGCM 155 (238)
Q Consensus 140 d~~~~~d~~~~~~~~l 155 (238)
+|.......+++.++
T Consensus 497 -sHd~~~~~~~~d~i~ 511 (552)
T TIGR03719 497 -SHDRWFLDRIATHIL 511 (552)
T ss_pred -eCCHHHHHHhCCEEE
Confidence 587776667666544
No 318
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.82 E-value=3.8e-20 Score=168.95 Aligned_cols=159 Identities=21% Similarity=0.262 Sum_probs=120.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-------CCCCC-CCCC-----Chhhhhh-----------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PVAM-----DIRELIS----------- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~~~-----~i~~~i~----------- 58 (238)
-.++||||+|||||||.|.|.|..+|.+|.|.++|-|... +.++| ||++ ||.+||.
T Consensus 363 ~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kI 442 (580)
T COG4618 363 EALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKV 442 (580)
T ss_pred ceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHH
Confidence 3689999999999999999999999999999999987643 56888 6654 5777775
Q ss_pred --------HHHHHHHcC------CCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHH
Q 026486 59 --------LEDVMEELG------LGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (238)
Q Consensus 59 --------~~~~l~~~~------l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ 121 (238)
++|++-.+- +|+.| ..++++++ .++||++.. +|.+++||||-+ ||......+. +
T Consensus 443 ieAA~lAgvHelIl~lP~GYdT~iG~~G------~~LSgGQRQRIaLARAlYG--~P~lvVLDEPNsNLD~~GE~AL~-~ 513 (580)
T COG4618 443 IEAARLAGVHELILRLPQGYDTRIGEGG------ATLSGGQRQRIALARALYG--DPFLVVLDEPNSNLDSEGEAALA-A 513 (580)
T ss_pred HHHHHHcChHHHHHhCcCCccCccCCCC------CCCCchHHHHHHHHHHHcC--CCcEEEecCCCCCcchhHHHHHH-H
Confidence 555554432 22333 23555554 899999998 999999999998 9999999988 8
Q ss_pred HHHHHHhCCCeEEEEEecccccccchhHHHhhhHHHHHHHHhhcCCeeeeeccc
Q 026486 122 FVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKM 175 (238)
Q Consensus 122 ll~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~~~p~~~vlsk~ 175 (238)
-+..++++|.++|+| +|.-+ .-..++.+++...|++....|.-+|+.|.
T Consensus 514 Ai~~~k~rG~~vvvi----aHRPs-~L~~~Dkilvl~~G~~~~FG~r~eVLa~~ 562 (580)
T COG4618 514 AILAAKARGGTVVVI----AHRPS-ALASVDKILVLQDGRIAAFGPREEVLAKV 562 (580)
T ss_pred HHHHHHHcCCEEEEE----ecCHH-HHhhcceeeeecCChHHhcCCHHHHHHHh
Confidence 888888888888888 36543 22345566777777777777776666554
No 319
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.82 E-value=1.9e-20 Score=178.10 Aligned_cols=130 Identities=18% Similarity=0.125 Sum_probs=95.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-------CCCCC-CC-----CCChhhhhh-----------H
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS-----------L 59 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~-----~~~i~~~i~-----------~ 59 (238)
.++|+|+||||||||+++|+|+++|++|+|.++|.+... +.++| +| +-++++++. +
T Consensus 360 ~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i 439 (571)
T TIGR02203 360 TVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEI 439 (571)
T ss_pred EEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHH
Confidence 579999999999999999999999999999999987532 33455 33 346777764 3
Q ss_pred HHHHHHcCCCC------CCc--hh-hhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 026486 60 EDVMEELGLGP------NGG--LI-YCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (238)
Q Consensus 60 ~~~l~~~~l~~------~~~--~~-~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~ 127 (238)
.++++..|+.+ +|- .+ ..-..+++|++ .+|||++.. +|++++|||||+ ||..+.+.++ +.++++.
T Consensus 440 ~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~--~~~illLDEpts~LD~~~~~~i~-~~L~~~~ 516 (571)
T TIGR02203 440 ERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLK--DAPILILDEATSALDNESERLVQ-AALERLM 516 (571)
T ss_pred HHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhc--CCCEEEEeCccccCCHHHHHHHH-HHHHHHh
Confidence 44555655531 110 00 00023455543 899999999 999999999999 9999999998 7777774
Q ss_pred hCCCeEEEEE
Q 026486 128 SRNFNVCAVY 137 (238)
Q Consensus 128 ~~~~tvi~v~ 137 (238)
.++|+|+|+
T Consensus 517 -~~~tiIiit 525 (571)
T TIGR02203 517 -QGRTTLVIA 525 (571)
T ss_pred -CCCEEEEEe
Confidence 468888883
No 320
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.82 E-value=1.3e-20 Score=179.48 Aligned_cols=134 Identities=17% Similarity=0.156 Sum_probs=97.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-------CCCCC-CC-----CCChhhhhh----------HH
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------LE 60 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~-----~~~i~~~i~----------~~ 60 (238)
.++|+||||||||||+++|+|+++|++|+|.++|.+... +.++| +| .-++++++. +.
T Consensus 343 ~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~ 422 (569)
T PRK10789 343 MLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIE 422 (569)
T ss_pred EEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHHHhcCCCCCCHHHHH
Confidence 589999999999999999999999999999999987532 22333 22 236777764 34
Q ss_pred HHHHHcCCCC------CCchh---hhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 026486 61 DVMEELGLGP------NGGLI---YCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (238)
Q Consensus 61 ~~l~~~~l~~------~~~~~---~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (238)
++++..++.. .|-.. ..-..+++|++ ++|||++.. +|+++||||||+ ||+.+...+. +.++++.
T Consensus 423 ~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~--~~~illlDEpts~LD~~~~~~i~-~~l~~~~- 498 (569)
T PRK10789 423 HVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLL--NAEILILDDALSAVDGRTEHQIL-HNLRQWG- 498 (569)
T ss_pred HHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhc--CCCEEEEECccccCCHHHHHHHH-HHHHHHh-
Confidence 4455544431 11000 00023555543 899999999 999999999999 9999999999 7777774
Q ss_pred CCCeEEEEEeccccccc
Q 026486 129 RNFNVCAVYLLDSQFIT 145 (238)
Q Consensus 129 ~~~tvi~v~l~d~~~~~ 145 (238)
.++|+|++ +|..+
T Consensus 499 ~~~tii~i----tH~~~ 511 (569)
T PRK10789 499 EGRTVIIS----AHRLS 511 (569)
T ss_pred CCCEEEEE----ecchh
Confidence 57888877 47664
No 321
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.82 E-value=6.3e-20 Score=176.92 Aligned_cols=142 Identities=15% Similarity=0.185 Sum_probs=98.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCC----CCCC-CCCCCCChhhhhh--------------HHHHHH
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA----AENF-DYPVAMDIRELIS--------------LEDVME 64 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~----~~~~-~~~~~~~i~~~i~--------------~~~~l~ 64 (238)
+++|+||||||||||+++|+|+++|++|+|.+ |.+.. .+.. .+.+..++.+++. +.++++
T Consensus 347 ~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~~i~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~ 425 (635)
T PRK11147 347 KIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKLEVAYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQ 425 (635)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCcEEEEEeCcccccCCCCCHHHHHHhhcccccccchHHHHHHHHH
Confidence 68999999999999999999999999999988 43221 1111 1233445555442 345666
Q ss_pred HcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEEeccc
Q 026486 65 ELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDS 141 (238)
Q Consensus 65 ~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~tvi~v~l~d~ 141 (238)
.+++.+.. .......+++|.+ ++||++++. +|++|||||||+ ||+.++..+. ++++++ +.++|+|+
T Consensus 426 ~~~l~~~~-~~~~~~~LSgGekqRl~la~al~~--~p~lLlLDEPt~~LD~~~~~~l~-~~l~~~---~~tvi~vS---- 494 (635)
T PRK11147 426 DFLFHPKR-AMTPVKALSGGERNRLLLARLFLK--PSNLLILDEPTNDLDVETLELLE-ELLDSY---QGTVLLVS---- 494 (635)
T ss_pred hcCCCHHH-HhChhhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCCCCCCHHHHHHHH-HHHHhC---CCeEEEEE----
Confidence 77774321 1112245666654 899999999 999999999999 9999998777 777665 44777773
Q ss_pred ccccchhHHHhhhHHH
Q 026486 142 QFITDVTKFISGCMAS 157 (238)
Q Consensus 142 ~~~~d~~~~~~~~l~~ 157 (238)
|.......+++.++..
T Consensus 495 Hd~~~~~~~~d~i~~l 510 (635)
T PRK11147 495 HDRQFVDNTVTECWIF 510 (635)
T ss_pred CCHHHHHHhcCEEEEE
Confidence 6655555555544443
No 322
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.82 E-value=3.3e-20 Score=176.35 Aligned_cols=135 Identities=14% Similarity=0.076 Sum_probs=99.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-------CCCCC-CCCC-----Chhhhh-------hHHHHH
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PVAM-----DIRELI-------SLEDVM 63 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~~~-----~i~~~i-------~~~~~l 63 (238)
.++|+||||||||||+++|+|+++|++|+|.++|.+... ..++| +|+. +++++. .+.+++
T Consensus 370 ~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~ 449 (555)
T TIGR01194 370 IVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDEGEHASLDNAQQYL 449 (555)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhcccccchhHHHHHHHH
Confidence 689999999999999999999999999999999987643 23444 3321 333332 256678
Q ss_pred HHcCCCCCCc-----hhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEE
Q 026486 64 EELGLGPNGG-----LIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCA 135 (238)
Q Consensus 64 ~~~~l~~~~~-----~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~tvi~ 135 (238)
+.+++.+.-. ... ...+++|++ ++|||++.. +|+++|+||||+ ||+.+.+.+.+.+++.++..++|+++
T Consensus 450 ~~~~l~~~~~~lp~g~~t-~~~LSgGq~qRlalaRall~--~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiii 526 (555)
T TIGR01194 450 QRLEIADKVKIEDGGFST-TTALSTGQQKRLALICAWLE--DRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIII 526 (555)
T ss_pred HHcCCchhhcccccccCC-cccCCHHHHHHHHHHHHHHc--CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 8888764211 100 124555554 899999999 999999999999 99999999884456556556888888
Q ss_pred EEeccccccc
Q 026486 136 VYLLDSQFIT 145 (238)
Q Consensus 136 v~l~d~~~~~ 145 (238)
| +|..+
T Consensus 527 i----sH~~~ 532 (555)
T TIGR01194 527 I----SHDDQ 532 (555)
T ss_pred E----eccHH
Confidence 8 47654
No 323
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.82 E-value=2.1e-20 Score=178.63 Aligned_cols=143 Identities=18% Similarity=0.193 Sum_probs=100.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-------CCCCC-CC-----CCChhhhhh----------HH
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------LE 60 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~-----~~~i~~~i~----------~~ 60 (238)
.++|+|+||||||||+++|+|+++|++|+|.++|.+... +.++| +| +-|+++++. +.
T Consensus 363 ~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~ 442 (588)
T PRK13657 363 TVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMR 442 (588)
T ss_pred EEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHHH
Confidence 589999999999999999999999999999999987643 34455 33 236777765 33
Q ss_pred HHHHHcCCCC------CCchhhh----HHhhhhhH--HHHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 026486 61 DVMEELGLGP------NGGLIYC----MEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (238)
Q Consensus 61 ~~l~~~~l~~------~~~~~~~----~~~~~~~~--s~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~ 127 (238)
++++..++.. .| .... -..+++|+ +.+|||++.. +|+++||||||+ ||+.+.+.++ +.++++.
T Consensus 443 ~al~~~~l~~~i~~lp~g-ldt~i~~~g~~LSgGq~QRialARall~--~~~iliLDEpts~LD~~t~~~i~-~~l~~~~ 518 (588)
T PRK13657 443 AAAERAQAHDFIERKPDG-YDTVVGERGRQLSGGERQRLAIARALLK--DPPILILDEATSALDVETEAKVK-AALDELM 518 (588)
T ss_pred HHHHHhCHHHHHHhCccc-ccchhcCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCCccCCCHHHHHHHH-HHHHHHh
Confidence 3444444321 11 0000 01244544 3999999999 999999999999 9999999998 7777764
Q ss_pred hCCCeEEEEEecccccccchhHHHhhhHH
Q 026486 128 SRNFNVCAVYLLDSQFITDVTKFISGCMA 156 (238)
Q Consensus 128 ~~~~tvi~v~l~d~~~~~d~~~~~~~~l~ 156 (238)
.++|+++|+ |.... .+.++.++.
T Consensus 519 -~~~tvIiit----Hr~~~-~~~~D~ii~ 541 (588)
T PRK13657 519 -KGRTTFIIA----HRLST-VRNADRILV 541 (588)
T ss_pred -cCCEEEEEE----ecHHH-HHhCCEEEE
Confidence 478888884 66532 233444433
No 324
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.82 E-value=9e-20 Score=145.25 Aligned_cols=146 Identities=19% Similarity=0.246 Sum_probs=109.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecC------CC-------CCCC-----C--CCCCChhhhhh-----
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP------AA-------ENFD-----Y--PVAMDIRELIS----- 58 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~------~~-------~~~~-----~--~~~~~i~~~i~----- 58 (238)
.++++||+|+|||||+|.++-+.-|.+|+..+-|... .+ ++++ | .|.+++-+++-
T Consensus 30 tlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy~lwphltv~enlieap~k 109 (242)
T COG4161 30 TLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCR 109 (242)
T ss_pred EEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhhHH
Confidence 4789999999999999999999999999999977532 11 1122 1 34555544431
Q ss_pred ------------HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHH
Q 026486 59 ------------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV 123 (238)
Q Consensus 59 ------------~~~~l~~~~l~~~~~~~~~~~~~~~~~--s~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll 123 (238)
+.++++++.+.+... .+++. +++++ +++|||++.+ +|++++|||||+ |||....++. +++
T Consensus 110 v~gl~~~qa~~~a~ellkrlrl~~~ad-r~plh-lsggqqqrvaiaralmm--kpqvllfdeptaaldpeitaqvv-~ii 184 (242)
T COG4161 110 VLGLSKDQALARAEKLLKRLRLKPYAD-RYPLH-LSGGQQQRVAIARALMM--EPQVLLFDEPTAALDPEITAQIV-SII 184 (242)
T ss_pred HhCCCHHHHHHHHHHHHHHhccccccc-cCcee-cccchhhhHHHHHHHhc--CCcEEeecCcccccCHHHHHHHH-HHH
Confidence 567777888877642 33332 34443 3999999999 999999999998 9999999999 999
Q ss_pred HHHHhCCCeEEEEEecccccccchhHHHhhhHHHH
Q 026486 124 DHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASL 158 (238)
Q Consensus 124 ~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~ 158 (238)
++|...|.|-++|+ |.+.-..+..+.++.+-
T Consensus 185 kel~~tgitqvivt----hev~va~k~as~vvyme 215 (242)
T COG4161 185 KELAETGITQVIVT----HEVEVARKTASRVVYME 215 (242)
T ss_pred HHHHhcCceEEEEE----eehhHHHhhhhheEeee
Confidence 99988899988884 77766666666554433
No 325
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.82 E-value=9.9e-20 Score=171.93 Aligned_cols=134 Identities=22% Similarity=0.269 Sum_probs=99.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-------CCCCC-CC-----CCChhhhhh----------HH
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------LE 60 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~-----~~~i~~~i~----------~~ 60 (238)
.++|+||||||||||+++|+|+++|++|+|.++|.+... +.++| +| +-+++|++. +.
T Consensus 350 ~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~ 429 (529)
T TIGR02857 350 RVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIR 429 (529)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCcCHHHHHhccCCCCCHHHHH
Confidence 589999999999999999999999999999999987643 23444 22 346888775 44
Q ss_pred HHHHHcCCCC------CCchh---hhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 026486 61 DVMEELGLGP------NGGLI---YCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (238)
Q Consensus 61 ~~l~~~~l~~------~~~~~---~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (238)
++++..++.+ +|-.. ..-..+++|++ .++||++.. +|+++|+||||+ +|+.+.+.+. +.++++.
T Consensus 430 ~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~--~~~ililDE~ts~lD~~~~~~i~-~~l~~~~- 505 (529)
T TIGR02857 430 RALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLR--DAPLLLLDEPTAHLDAETEALVT-EALRALA- 505 (529)
T ss_pred HHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhc--CCCEEEEeCcccccCHHHHHHHH-HHHHHhc-
Confidence 5566665532 11000 00123555543 899999999 999999999999 9999999998 7777774
Q ss_pred CCCeEEEEEeccccccc
Q 026486 129 RNFNVCAVYLLDSQFIT 145 (238)
Q Consensus 129 ~~~tvi~v~l~d~~~~~ 145 (238)
.++|+|+| +|..+
T Consensus 506 ~~~t~i~i----tH~~~ 518 (529)
T TIGR02857 506 QGRTVLLV----THRLA 518 (529)
T ss_pred CCCEEEEE----ecCHH
Confidence 57888888 47664
No 326
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.82 E-value=6.7e-20 Score=174.27 Aligned_cols=141 Identities=16% Similarity=0.118 Sum_probs=101.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCC----CCCC-CCCCCCChhhhhh--------------HHHHH
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA----AENF-DYPVAMDIRELIS--------------LEDVM 63 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~----~~~~-~~~~~~~i~~~i~--------------~~~~l 63 (238)
-+++|+||||||||||+++|+|+++|++|+|.+.+ +.. .+.. .+.+..++.+++. ..+++
T Consensus 351 e~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l 429 (556)
T PRK11819 351 GIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-TVKLAYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYV 429 (556)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-ceEEEEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHHH
Confidence 36899999999999999999999999999999843 210 1111 2233445555542 34578
Q ss_pred HHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEEecc
Q 026486 64 EELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLD 140 (238)
Q Consensus 64 ~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~tvi~v~l~d 140 (238)
+.+++.+.. .......+++|++ ++||++++. +|+++|+||||+ ||+.++..+. ++++++. + ++|++
T Consensus 430 ~~~~l~~~~-~~~~~~~LSgG~~qrv~la~al~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~--~-tvi~v---- 498 (556)
T PRK11819 430 GRFNFKGGD-QQKKVGVLSGGERNRLHLAKTLKQ--GGNVLLLDEPTNDLDVETLRALE-EALLEFP--G-CAVVI---- 498 (556)
T ss_pred HhCCCChhH-hcCchhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCCCCCCHHHHHHHH-HHHHhCC--C-eEEEE----
Confidence 888885321 1111245666654 899999999 999999999999 9999999998 8888762 3 67666
Q ss_pred cccccchhHHHhhhH
Q 026486 141 SQFITDVTKFISGCM 155 (238)
Q Consensus 141 ~~~~~d~~~~~~~~l 155 (238)
+|.......+++.++
T Consensus 499 tHd~~~~~~~~d~i~ 513 (556)
T PRK11819 499 SHDRWFLDRIATHIL 513 (556)
T ss_pred ECCHHHHHHhCCEEE
Confidence 587776666666443
No 327
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.82 E-value=1.3e-20 Score=183.78 Aligned_cols=132 Identities=15% Similarity=0.132 Sum_probs=94.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-------CCCCC-CC-----CCChhhhhh----------HH
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------LE 60 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~-----~~~i~~~i~----------~~ 60 (238)
.++|+||||||||||+++|.|+++|++|+|.++|.+... +.++| +| +-+++||+. +.
T Consensus 509 ~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~ 588 (711)
T TIGR00958 509 VVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIM 588 (711)
T ss_pred EEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHH
Confidence 589999999999999999999999999999999987642 23444 33 346888875 34
Q ss_pred HHHHHcCCCC------CCchh---hhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 026486 61 DVMEELGLGP------NGGLI---YCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (238)
Q Consensus 61 ~~l~~~~l~~------~~~~~---~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (238)
++++..++.+ +|-.. ..-..+++|++ ++|||++.. +|+++|+||||+ ||..+.+.+. + .. ..
T Consensus 589 ~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~--~p~ILILDEpTSaLD~~te~~i~-~-~~--~~ 662 (711)
T TIGR00958 589 AAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVR--KPRVLILDEATSALDAECEQLLQ-E-SR--SR 662 (711)
T ss_pred HHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhc--CCCEEEEEccccccCHHHHHHHH-H-hh--cc
Confidence 4555555431 11000 00023555543 899999999 999999999999 9999988777 5 21 23
Q ss_pred CCCeEEEEEeccccccc
Q 026486 129 RNFNVCAVYLLDSQFIT 145 (238)
Q Consensus 129 ~~~tvi~v~l~d~~~~~ 145 (238)
.++|+|+| +|..+
T Consensus 663 ~~~TvIiI----tHrl~ 675 (711)
T TIGR00958 663 ASRTVLLI----AHRLS 675 (711)
T ss_pred CCCeEEEE----eccHH
Confidence 57888888 47764
No 328
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.82 E-value=1.1e-19 Score=172.62 Aligned_cols=142 Identities=16% Similarity=0.047 Sum_probs=97.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeec-CC--CCCCCCCCCCChhhhhhH--------------------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-PA--AENFDYPVAMDIRELISL-------------------- 59 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d-~~--~~~~~~~~~~~i~~~i~~-------------------- 59 (238)
-+++|+||||||||||+++|+|+++|++|+|.+++.. ++ .+.....++.++.+++..
T Consensus 32 e~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~ 111 (552)
T TIGR03719 32 AKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFA 111 (552)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhc
Confidence 3689999999999999999999999999999986421 10 011112234455555431
Q ss_pred --------------------------------HHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEe
Q 026486 60 --------------------------------EDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFD 105 (238)
Q Consensus 60 --------------------------------~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilD 105 (238)
.++++.+|+... ......+++|++ ++||++++. +|+++|||
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~---~~~~~~LSgGqkqrv~la~al~~--~p~lLLLD 186 (552)
T TIGR03719 112 EPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPW---DADVTKLSGGERRRVALCRLLLS--KPDMLLLD 186 (552)
T ss_pred cCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCcc---cCchhhcCHHHHHHHHHHHHHhc--CCCEEEEc
Confidence 123334445321 112345666654 999999999 99999999
Q ss_pred CCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccchhHHHhhhHHH
Q 026486 106 CPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMAS 157 (238)
Q Consensus 106 EPt~-LD~~~~~~~~~~ll~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~ 157 (238)
|||+ ||+.++..+. ++++++ +.++|+| +|.......+++.++..
T Consensus 187 EPt~~LD~~~~~~l~-~~L~~~---~~tvIii----sHd~~~~~~~~d~v~~l 231 (552)
T TIGR03719 187 EPTNHLDAESVAWLE-QHLQEY---PGTVVAV----THDRYFLDNVAGWILEL 231 (552)
T ss_pred CCCCCCChHHHHHHH-HHHHhC---CCeEEEE----eCCHHHHHhhcCeEEEE
Confidence 9999 9999998888 777665 3477777 47776666666655443
No 329
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.81 E-value=2.6e-20 Score=177.37 Aligned_cols=134 Identities=17% Similarity=0.178 Sum_probs=97.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-------CCCCC-CC-----CCChhhhhh----------HH
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------LE 60 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~-----~~~i~~~i~----------~~ 60 (238)
.++|+||||||||||+++|+|+++|.+|+|.++|.+... +.++| +| +-++++++. +.
T Consensus 368 ~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~ 447 (576)
T TIGR02204 368 TVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVE 447 (576)
T ss_pred EEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHH
Confidence 579999999999999999999999999999999977532 23555 33 336777775 34
Q ss_pred HHHHHcCCCC------CCch---hhhHHhhhhhH--HHHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 026486 61 DVMEELGLGP------NGGL---IYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (238)
Q Consensus 61 ~~l~~~~l~~------~~~~---~~~~~~~~~~~--s~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (238)
++++..++.. +|-. ...-..+++|+ ++++||++.. +|+++|+||||+ +|+.+.+.++ +.++++.
T Consensus 448 ~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~--~~~ililDEpts~lD~~~~~~i~-~~l~~~~- 523 (576)
T TIGR02204 448 AAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILK--DAPILLLDEATSALDAESEQLVQ-QALETLM- 523 (576)
T ss_pred HHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHh--CCCeEEEeCcccccCHHHHHHHH-HHHHHHh-
Confidence 4455554431 1100 00012354554 3899999999 999999999999 9999999888 7777774
Q ss_pred CCCeEEEEEeccccccc
Q 026486 129 RNFNVCAVYLLDSQFIT 145 (238)
Q Consensus 129 ~~~tvi~v~l~d~~~~~ 145 (238)
.++|+|+| +|...
T Consensus 524 ~~~t~Iii----tH~~~ 536 (576)
T TIGR02204 524 KGRTTLII----AHRLA 536 (576)
T ss_pred CCCEEEEE----ecchH
Confidence 47888888 47664
No 330
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.81 E-value=5.8e-20 Score=174.35 Aligned_cols=135 Identities=18% Similarity=0.078 Sum_probs=97.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-------CCCCC-CCCC-----Chhhh---h---hHHHHH
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PVAM-----DIREL---I---SLEDVM 63 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~~~-----~i~~~---i---~~~~~l 63 (238)
-.++|+||||||||||+++|+|+++|++|+|.++|.+... +.++| +|+. +++++ . .+.+++
T Consensus 350 ~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~ 429 (547)
T PRK10522 350 ELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPEGKPANPALVEKWL 429 (547)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccccCchHHHHHHHHH
Confidence 3589999999999999999999999999999999987643 23444 3322 23332 1 256677
Q ss_pred HHcCCCCCCchhh---hHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH-HHhCCCeEEEE
Q 026486 64 EELGLGPNGGLIY---CMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH-LKSRNFNVCAV 136 (238)
Q Consensus 64 ~~~~l~~~~~~~~---~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~-l~~~~~tvi~v 136 (238)
+.++++..-.... .-..+++|++ ++|||++.. +|+++|+||||+ ||+.+...+. +.+.+ +++.+.|+++|
T Consensus 430 ~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~--~~~ililDE~ts~LD~~~~~~i~-~~l~~~~~~~~~tvi~i 506 (547)
T PRK10522 430 ERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAE--ERDILLLDEWAADQDPHFRREFY-QVLLPLLQEMGKTIFAI 506 (547)
T ss_pred HHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEECCCCCCCHHHHHHHH-HHHHHHHHhCCCEEEEE
Confidence 7887764311000 0023555543 899999999 999999999999 9999999988 55544 33357888888
Q ss_pred Eecccccc
Q 026486 137 YLLDSQFI 144 (238)
Q Consensus 137 ~l~d~~~~ 144 (238)
+|..
T Consensus 507 ----tH~~ 510 (547)
T PRK10522 507 ----SHDD 510 (547)
T ss_pred ----Eech
Confidence 3654
No 331
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.81 E-value=9.2e-20 Score=147.80 Aligned_cols=155 Identities=19% Similarity=0.218 Sum_probs=113.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCCC----------------CCCCCCCCChhhhh----------
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE----------------NFDYPVAMDIRELI---------- 57 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~----------------~~~~~~~~~i~~~i---------- 57 (238)
.++|||.||||||||.|.++|+++|++|+|.++|....-. +.++.|...|...+
T Consensus 41 TlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~ 120 (267)
T COG4167 41 TLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDL 120 (267)
T ss_pred EEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCccccChhhhhhhHhcchhhhcccC
Confidence 5799999999999999999999999999999999765321 11222222222221
Q ss_pred -------hHHHHHHHcCCCCCCchhhhHHhhhhh--HHHHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 026486 58 -------SLEDVMEELGLGPNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (238)
Q Consensus 58 -------~~~~~l~~~~l~~~~~~~~~~~~~~~~--~s~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~ 127 (238)
.+.+-++.+|+-|..+..+. ..++.+ +++++||||+. +|+++|.||..+ ||...+.++. ++.-+|+
T Consensus 121 ~~~~R~~~i~~TL~~VGL~Pdhan~~~-~~la~~QKQRVaLARALIL--~P~iIIaDeAl~~LD~smrsQl~-NL~LeLQ 196 (267)
T COG4167 121 EPEQRRKQIFETLRMVGLLPDHANYYP-HMLAPGQKQRVALARALIL--RPKIIIADEALASLDMSMRSQLI-NLMLELQ 196 (267)
T ss_pred ChHHHHHHHHHHHHHhccCccccccch-hhcCchhHHHHHHHHHHhc--CCcEEEehhhhhhccHHHHHHHH-HHHHHHH
Confidence 26778889999887655544 233333 45999999999 999999999998 9999999999 8888887
Q ss_pred h-CCCeEEEEEecccccccchhHHHhhhHHHHHHHHhhcCCeeeeecccccccch
Q 026486 128 S-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNK 181 (238)
Q Consensus 128 ~-~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~~~p~~~vlsk~dll~~~ 181 (238)
+ .|.+-|.|. +++ |+++.-...+-|+...+.++..
T Consensus 197 ek~GiSyiYV~----Qhl---------------G~iKHi~D~viVM~EG~vvE~G 232 (267)
T COG4167 197 EKQGISYIYVT----QHI---------------GMIKHISDQVLVMHEGEVVERG 232 (267)
T ss_pred HHhCceEEEEe----chh---------------hHhhhhcccEEEEecCceeecC
Confidence 5 588877773 544 3444444566667777776654
No 332
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=7.2e-20 Score=176.50 Aligned_cols=145 Identities=14% Similarity=0.114 Sum_probs=98.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecC----CCCC-------CCC-CCC------CCh-----------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP----AAEN-------FDY-PVA------MDI----------- 53 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~----~~~~-------~~~-~~~------~~i----------- 53 (238)
-+++|+||||||||||+|+|+|.++|++|+|.+.|... ..+. +.| .+. ++.
T Consensus 28 e~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~ 107 (638)
T PRK10636 28 QKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPALPQPALEYVIDGDREYRQLEAQLHDANERNDG 107 (638)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHhccCCH
Confidence 36899999999999999999999999999999876421 0000 111 000 000
Q ss_pred ------hh----------hhhHHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHh
Q 026486 54 ------RE----------LISLEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFT 114 (238)
Q Consensus 54 ------~~----------~i~~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~ 114 (238)
.. .-.+.++++.+|+.+... ......+++|++ ++||++|+. +|++|||||||+ ||+.+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~-~~~~~~LSgGerqRv~LA~aL~~--~P~lLLLDEPtn~LD~~~ 184 (638)
T PRK10636 108 HAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQL-ERPVSDFSGGWRMRLNLAQALIC--RSDLLLLDEPTNHLDLDA 184 (638)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhh-cCchhhcCHHHHHHHHHHHHHcc--CCCEEEEcCCCCcCCHHH
Confidence 00 002456778888853211 112345666654 999999999 999999999999 99999
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEEecccccccchhHHHhhhHHHH
Q 026486 115 HVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASL 158 (238)
Q Consensus 115 ~~~~~~~ll~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~ 158 (238)
...+. ++++++ +.++|+| +|.......+++.++...
T Consensus 185 ~~~L~-~~L~~~---~~tviiv----sHd~~~l~~~~d~i~~L~ 220 (638)
T PRK10636 185 VIWLE-KWLKSY---QGTLILI----SHDRDFLDPIVDKIIHIE 220 (638)
T ss_pred HHHHH-HHHHhC---CCeEEEE----eCCHHHHHHhcCEEEEEe
Confidence 98777 666654 4678777 477766666666554433
No 333
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.81 E-value=1.2e-19 Score=180.43 Aligned_cols=153 Identities=16% Similarity=0.232 Sum_probs=125.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC--------CCCCC-CC------CCChhhhhh---------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-PV------AMDIRELIS--------- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~--------~~~~~-~~------~~~i~~~i~--------- 58 (238)
-|.|+.|||||||||+++++.|..+|++|++.+.|.+... +.++| || .+|.||++.
T Consensus 592 ecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~ 671 (885)
T KOG0059|consen 592 ECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTGREHLEFYARLRGLP 671 (885)
T ss_pred ceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhcccCCchhhhhhhccHHHHHHHHHHHcCCC
Confidence 4789999999999999999999999999999999988743 34777 44 456677653
Q ss_pred -------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 026486 59 -------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (238)
Q Consensus 59 -------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (238)
++..++.+++.+.+... ...++++.+ ..+|.+++. +|+++++|||++ +||.+++.++ ++++++++
T Consensus 672 ~~di~~~v~~ll~~~~L~~~~~~~--~~~ySgG~kRkLs~aialig--~p~vi~LDEPstGmDP~arr~lW-~ii~~~~k 746 (885)
T KOG0059|consen 672 RSDIGSAIEKLLRLVGLGPYANKQ--VRTYSGGNKRRLSFAIALIG--DPSVILLDEPSTGLDPKARRHLW-DIIARLRK 746 (885)
T ss_pred hhHHHHHHHHHHHHcCChhhhccc--hhhCCCcchhhHHHHHHHhc--CCCEEEecCCCCCCCHHHHHHHH-HHHHHHHh
Confidence 67788889998876544 234555543 777888888 999999999999 9999999999 99999988
Q ss_pred CCCeEEEEEecccccccchhHHHhhhHHHHHHHHhh
Q 026486 129 RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQL 164 (238)
Q Consensus 129 ~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~ 164 (238)
+|+.+++. ||.+++.+..|+++-....|+++.
T Consensus 747 ~g~aiiLT----SHsMeE~EaLCtR~aImv~G~l~c 778 (885)
T KOG0059|consen 747 NGKAIILT----SHSMEEAEALCTRTAIMVIGQLRC 778 (885)
T ss_pred cCCEEEEE----cCCHHHHHHHhhhhheeecCeeEE
Confidence 77666555 799999999999988877777654
No 334
>PLN03232 ABC transporter C family member; Provisional
Probab=99.81 E-value=4.4e-20 Score=191.76 Aligned_cols=149 Identities=19% Similarity=0.180 Sum_probs=106.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-------CCCCC-CC-----CCChhhhhh---------HHH
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS---------LED 61 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~-----~~~i~~~i~---------~~~ 61 (238)
.+||+||+|||||||+++|.|+++|++|+|.++|.|... ..+++ +| +-|+|+|+. +.+
T Consensus 1264 kvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~~~sdeei~~ 1343 (1495)
T PLN03232 1264 KVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWE 1343 (1495)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCCCCCHHHHHH
Confidence 589999999999999999999999999999999998753 23444 33 236888875 455
Q ss_pred HHHHcCCCCC-----Cchhhh----HHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC
Q 026486 62 VMEELGLGPN-----GGLIYC----MEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR 129 (238)
Q Consensus 62 ~l~~~~l~~~-----~~~~~~----~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~ 129 (238)
+++..++.+. .+.... -..+++|++ .+||||+.. +|+++||||||+ +|..+.+.+. +.+++.. +
T Consensus 1344 al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr--~~~ILILDEATSaLD~~Te~~Iq-~~L~~~~-~ 1419 (1495)
T PLN03232 1344 ALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLR--RSKILVLDEATASVDVRTDSLIQ-RTIREEF-K 1419 (1495)
T ss_pred HHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHh--CCCEEEEECCcccCCHHHHHHHH-HHHHHHc-C
Confidence 6666655321 000000 013555544 899999999 999999999999 9999998887 7777763 4
Q ss_pred CCeEEEEEecccccccchhHHHhhhHHHHHHH
Q 026486 130 NFNVCAVYLLDSQFITDVTKFISGCMASLSAM 161 (238)
Q Consensus 130 ~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~ 161 (238)
++|+|+| +|.++...+ ++.+++...|.
T Consensus 1420 ~~TvI~I----AHRl~ti~~-~DrIlVL~~G~ 1446 (1495)
T PLN03232 1420 SCTMLVI----AHRLNTIID-CDKILVLSSGQ 1446 (1495)
T ss_pred CCEEEEE----eCCHHHHHh-CCEEEEEECCE
Confidence 7888888 588765444 34444333333
No 335
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.80 E-value=3.2e-20 Score=184.06 Aligned_cols=146 Identities=19% Similarity=0.226 Sum_probs=105.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCCC-------CCCC------CCCCChhhhhh----------H
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE-------NFDY------PVAMDIRELIS----------L 59 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~-------~~~~------~~~~~i~~~i~----------~ 59 (238)
-.++++|||||||||++++|.+++.|++|+|.++|.|...- .++. ..+.+|+|++. +
T Consensus 380 ~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i 459 (1228)
T KOG0055|consen 380 QTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEI 459 (1228)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHH
Confidence 36899999999999999999999999999999999887541 2222 12446777775 2
Q ss_pred HHHHHHcC---------------CCCCCchhhhHHhhhhhH--HHHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHH
Q 026486 60 EDVMEELG---------------LGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (238)
Q Consensus 60 ~~~l~~~~---------------l~~~~~~~~~~~~~~~~~--s~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ 121 (238)
.++.+..+ .++.|. .+++++ +++|||+++. +|++|+|||||+ ||+.+.+.+. +
T Consensus 460 ~~a~k~ana~~fi~~lp~g~~T~vge~g~------qLSGGQKQRIAIARalv~--~P~ILLLDEaTSaLD~~se~~Vq-~ 530 (1228)
T KOG0055|consen 460 EEAAKAANAHDFILKLPDGYDTLVGERGV------QLSGGQKQRIAIARALVR--NPKILLLDEATSALDAESERVVQ-E 530 (1228)
T ss_pred HHHHHHccHHHHHHhhHHhhcccccCCCC------CCChHHHHHHHHHHHHHh--CCCEEEecCcccccCHHHHHHHH-H
Confidence 22222211 122221 255554 4999999999 999999999999 9999998888 8
Q ss_pred HHHHHHhCCCeEEEEEecccccccchhHHHhhhHHHHHHHHh
Q 026486 122 FVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQ 163 (238)
Q Consensus 122 ll~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~ 163 (238)
.+++.. .|+|.|+| +|.++.... ++.+++...|.+.
T Consensus 531 ALd~~~-~grTTivV----aHRLStIrn-aD~I~v~~~G~Iv 566 (1228)
T KOG0055|consen 531 ALDKAS-KGRTTIVV----AHRLSTIRN-ADKIAVMEEGKIV 566 (1228)
T ss_pred HHHHhh-cCCeEEEE----eeehhhhhc-cCEEEEEECCEEE
Confidence 888874 57787777 588877666 5555544444443
No 336
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.80 E-value=1.2e-19 Score=174.99 Aligned_cols=141 Identities=16% Similarity=0.148 Sum_probs=97.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeec--------CCCCCCCC-CCCC-----------------------
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD--------PAAENFDY-PVAM----------------------- 51 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d--------~~~~~~~~-~~~~----------------------- 51 (238)
.++|+||||||||||+++|+|+++|++|+|.+.+.. +......+ .+..
T Consensus 31 ~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (635)
T PRK11147 31 RVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVET 110 (635)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhcc
Confidence 689999999999999999999999999999987621 00011111 0000
Q ss_pred -Chhhh--------------------hhHHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCC
Q 026486 52 -DIREL--------------------ISLEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPG 108 (238)
Q Consensus 52 -~i~~~--------------------i~~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt 108 (238)
+..++ -.+.++++.+|+..+ .....+++|.+ ++||++|+. +|++|||||||
T Consensus 111 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~----~~~~~LSgGekqRv~LAraL~~--~P~lLLLDEPt 184 (635)
T PRK11147 111 DPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDPD----AALSSLSGGWLRKAALGRALVS--NPDVLLLDEPT 184 (635)
T ss_pred CchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCCC----CchhhcCHHHHHHHHHHHHHhc--CCCEEEEcCCC
Confidence 00000 014566777787532 12345666654 999999999 99999999999
Q ss_pred c-ccHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccchhHHHhhhHHHH
Q 026486 109 Q-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASL 158 (238)
Q Consensus 109 ~-LD~~~~~~~~~~ll~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~ 158 (238)
+ ||+.++..+. ++++++ +.++|+| +|.......+++.++...
T Consensus 185 ~~LD~~~~~~L~-~~L~~~---~~tvliv----sHd~~~l~~~~d~i~~L~ 227 (635)
T PRK11147 185 NHLDIETIEWLE-GFLKTF---QGSIIFI----SHDRSFIRNMATRIVDLD 227 (635)
T ss_pred CccCHHHHHHHH-HHHHhC---CCEEEEE----eCCHHHHHHhcCeEEEEE
Confidence 9 9999998888 777766 2477777 477766666666554433
No 337
>PLN03140 ABC transporter G family member; Provisional
Probab=99.80 E-value=1.5e-19 Score=186.65 Aligned_cols=158 Identities=17% Similarity=0.186 Sum_probs=114.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcC--CCceEEEeeecCCC----CCCCC-------CCCCChhhhhh-----------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCET--VRRTMHIVNLDPAA----ENFDY-------PVAMDIRELIS----------- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~--~~G~i~i~~~d~~~----~~~~~-------~~~~~i~~~i~----------- 58 (238)
-+++|+||||||||||+++|+|..++ .+|+|.++|.+... ..++| .+..|++|++.
T Consensus 907 el~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~ 986 (1470)
T PLN03140 907 VLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEV 986 (1470)
T ss_pred eEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCC
Confidence 36899999999999999999999763 68999999976532 22333 23456776653
Q ss_pred --------HHHHHHHcCCCCCCchhhh---HHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHH
Q 026486 59 --------LEDVMEELGLGPNGGLIYC---MEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD 124 (238)
Q Consensus 59 --------~~~~l~~~~l~~~~~~~~~---~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~ 124 (238)
++++++.++|.+....... ...++++++ +.||++|+. +|+++++||||+ ||..+...++ ++++
T Consensus 987 ~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~--~P~lL~LDEPTsgLD~~~a~~v~-~~L~ 1063 (1470)
T PLN03140 987 SKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVA--NPSIIFMDEPTSGLDARAAAIVM-RTVR 1063 (1470)
T ss_pred CHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhh--CCCEEEEeCCCCCCCHHHHHHHH-HHHH
Confidence 4568888888754322211 023555544 999999999 999999999999 9999999999 9999
Q ss_pred HHHhCCCeEEEEEeccccccc-chhHHHhhhHHHHH-HHHhhcCC
Q 026486 125 HLKSRNFNVCAVYLLDSQFIT-DVTKFISGCMASLS-AMVQLELP 167 (238)
Q Consensus 125 ~l~~~~~tvi~v~l~d~~~~~-d~~~~~~~~l~~~~-~~~~~~~p 167 (238)
++++.|.++|++ +|..+ +....++.+++... |.+....|
T Consensus 1064 ~l~~~g~tVI~t----~Hq~~~~i~~~~D~vllL~~gG~~v~~G~ 1104 (1470)
T PLN03140 1064 NTVDTGRTVVCT----IHQPSIDIFEAFDELLLMKRGGQVIYSGP 1104 (1470)
T ss_pred HHHHCCCEEEEE----eCCCCHHHHHhCCEEEEEcCCCEEEEECC
Confidence 998788888776 36665 34456666666553 55544444
No 338
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.80 E-value=1.7e-19 Score=186.12 Aligned_cols=158 Identities=13% Similarity=0.129 Sum_probs=113.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCc---CCCceEEEeeecCCC---CCCCC-C------CCCChhhhhh-----------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCE---TVRRTMHIVNLDPAA---ENFDY-P------VAMDIRELIS----------- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~---~~~G~i~i~~~d~~~---~~~~~-~------~~~~i~~~i~----------- 58 (238)
-+++|+||||||||||+++|+|..+ +++|+|.++|.+... +.++| + +..+++|++.
T Consensus 790 e~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~ 869 (1394)
T TIGR00956 790 TLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSV 869 (1394)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCC
Confidence 3689999999999999999999997 688999999987632 23444 2 2356777654
Q ss_pred --------HHHHHHHcCCCCCCchhhh--HHhhhhhHH--HHHHHHHhccCCCC-EEEEeCCCc-ccHHhHHHHHHHHHH
Q 026486 59 --------LEDVMEELGLGPNGGLIYC--MEHLEDNLD--DWLAEELDNYLDDD-YLVFDCPGQ-IELFTHVPVLRNFVD 124 (238)
Q Consensus 59 --------~~~~l~~~~l~~~~~~~~~--~~~~~~~~s--~~la~~l~~~~~p~-~lilDEPt~-LD~~~~~~~~~~ll~ 124 (238)
++++++.+++.+....... ...++++++ +.||++++. +|+ ++++||||+ ||..+...++ ++++
T Consensus 870 ~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~--~P~~iLlLDEPTsgLD~~~~~~i~-~~L~ 946 (1394)
T TIGR00956 870 SKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVA--KPKLLLFLDEPTSGLDSQTAWSIC-KLMR 946 (1394)
T ss_pred CHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHc--CCCeEEEEcCCCCCCCHHHHHHHH-HHHH
Confidence 4567888888654322211 012444443 899999999 997 999999999 9999999999 9999
Q ss_pred HHHhCCCeEEEEEecccccccch-hHHHhhhHHHHHH-HHhhcCC
Q 026486 125 HLKSRNFNVCAVYLLDSQFITDV-TKFISGCMASLSA-MVQLELP 167 (238)
Q Consensus 125 ~l~~~~~tvi~v~l~d~~~~~d~-~~~~~~~l~~~~~-~~~~~~p 167 (238)
+++++|.++|++ +|..... ...++.+++...+ .+....|
T Consensus 947 ~la~~g~tvI~t----~H~~~~~~~~~~D~vl~L~~GG~iv~~G~ 987 (1394)
T TIGR00956 947 KLADHGQAILCT----IHQPSAILFEEFDRLLLLQKGGQTVYFGD 987 (1394)
T ss_pred HHHHcCCEEEEE----ecCCCHHHHHhcCEEEEEcCCCEEEEECC
Confidence 998778888777 3665532 2345555555443 5444333
No 339
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.79 E-value=4.2e-19 Score=170.14 Aligned_cols=160 Identities=19% Similarity=0.247 Sum_probs=116.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcC---CCceEEEeeecCCC----CCCCC-------CCCCChhhhhh----------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCET---VRRTMHIVNLDPAA----ENFDY-------PVAMDIRELIS---------- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~---~~G~i~i~~~d~~~----~~~~~-------~~~~~i~~~i~---------- 58 (238)
-+.||+||+|||||||+++|+|-... .+|+|.++|..... ...+| .+.+||+|.+.
T Consensus 57 el~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~ 136 (613)
T KOG0061|consen 57 ELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSS 136 (613)
T ss_pred eEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCC
Confidence 36899999999999999999999874 78999999954322 11233 45678888774
Q ss_pred ---------HHHHHHHcCCCCCCchhhhH---HhhhhhH--HHHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHH
Q 026486 59 ---------LEDVMEELGLGPNGGLIYCM---EHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV 123 (238)
Q Consensus 59 ---------~~~~l~~~~l~~~~~~~~~~---~~~~~~~--s~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll 123 (238)
++++++++|+..-...+..- .-++++. ++.+|..+.. +|.++++||||+ ||..+..+++ +++
T Consensus 137 ~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~--~P~iLflDEPTSGLDS~sA~~vv-~~L 213 (613)
T KOG0061|consen 137 LSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLT--DPSILFLDEPTSGLDSFSALQVV-QLL 213 (613)
T ss_pred CCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHc--CCCEEEecCCCCCcchhhHHHHH-HHH
Confidence 88999999997432221110 1122232 3999999999 999999999999 9999999999 999
Q ss_pred HHHHhCCCeEEEEEecccccccchhHHHhhhHHHHHHHHhhcCCe
Q 026486 124 DHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPH 168 (238)
Q Consensus 124 ~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~~~p~ 168 (238)
+++++.|++||+.. | +--.+.-...+.+++...|.....+|.
T Consensus 214 k~lA~~grtVi~tI-H--QPss~lf~lFD~l~lLs~G~~vy~G~~ 255 (613)
T KOG0061|consen 214 KRLARSGRTVICTI-H--QPSSELFELFDKLLLLSEGEVVYSGSP 255 (613)
T ss_pred HHHHhCCCEEEEEE-e--CCcHHHHHHHhHhhhhcCCcEEEecCH
Confidence 99998888887652 2 222334455666666666666555555
No 340
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=6.5e-20 Score=168.67 Aligned_cols=126 Identities=21% Similarity=0.234 Sum_probs=94.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-------CCCCC-CCCC-----Chhhhhh----------HH
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PVAM-----DIRELIS----------LE 60 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~~~-----~i~~~i~----------~~ 60 (238)
-+||+|+|||||||++|+|.+++. ++|+|.++|.|... +.++| ||+- ||..++. +.
T Consensus 380 kVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~ 458 (591)
T KOG0057|consen 380 KVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVV 458 (591)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCCCcCHHHHH
Confidence 479999999999999999999999 99999999998743 44666 5532 4555554 55
Q ss_pred HHHHHcCCCC------CC-----chhhhHHhhhhhH--HHHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 026486 61 DVMEELGLGP------NG-----GLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (238)
Q Consensus 61 ~~l~~~~l~~------~~-----~~~~~~~~~~~~~--s~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l 126 (238)
++.+++|+.+ .| +.+ ...+++|. ++++||++.+ +|+++++||||+ ||..+.++++ +.+...
T Consensus 459 e~~k~a~~hd~i~~l~~GY~T~VGer--G~~LSGGekQrvslaRa~lK--da~Il~~DEaTS~LD~~TE~~i~-~~i~~~ 533 (591)
T KOG0057|consen 459 EACKRAGLHDVISRLPDGYQTLVGER--GLMLSGGEKQRVSLARAFLK--DAPILLLDEATSALDSETEREIL-DMIMDV 533 (591)
T ss_pred HHHHHcCcHHHHHhccccchhhHhhc--ccccccchHHHHHHHHHHhc--CCCeEEecCcccccchhhHHHHH-HHHHHh
Confidence 5556666542 11 111 12344443 3999999999 999999999999 9999999999 666663
Q ss_pred HhCCCeEEEE
Q 026486 127 KSRNFNVCAV 136 (238)
Q Consensus 127 ~~~~~tvi~v 136 (238)
..++|+|+|
T Consensus 534 -~~~rTvI~I 542 (591)
T KOG0057|consen 534 -MSGRTVIMI 542 (591)
T ss_pred -cCCCeEEEE
Confidence 357888887
No 341
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=1.4e-19 Score=166.37 Aligned_cols=138 Identities=20% Similarity=0.246 Sum_probs=100.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-------CCCCC-CC-----CCChhhhhh----------HH
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------LE 60 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~-----~~~i~~~i~----------~~ 60 (238)
-++|+|++||||||+++.+.|.++|++|+|.++|.+++. +.+.+ .| +-|+|+|+. +.
T Consensus 366 kvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~ 445 (573)
T COG4987 366 KVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELW 445 (573)
T ss_pred eEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHH
Confidence 379999999999999999999999999999999987753 12332 22 225777764 55
Q ss_pred HHHHHcCCCCCC-----chhhhH----HhhhhhH--HHHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 026486 61 DVMEELGLGPNG-----GLIYCM----EHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (238)
Q Consensus 61 ~~l~~~~l~~~~-----~~~~~~----~~~~~~~--s~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (238)
++++.+||...- +....+ +.++++. +.+|||++.. +.++++|||||. ||+.+.++++ +++.+-.
T Consensus 446 ~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~--dapl~lLDEPTegLD~~TE~~vL-~ll~~~~- 521 (573)
T COG4987 446 AALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLH--DAPLWLLDEPTEGLDPITERQVL-ALLFEHA- 521 (573)
T ss_pred HHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHc--CCCeEEecCCcccCChhhHHHHH-HHHHHHh-
Confidence 667777764310 000000 2244432 3899999999 999999999998 9999999999 6555543
Q ss_pred CCCeEEEEEecccccccchhH
Q 026486 129 RNFNVCAVYLLDSQFITDVTK 149 (238)
Q Consensus 129 ~~~tvi~v~l~d~~~~~d~~~ 149 (238)
+|+|+++|+ |.....+.
T Consensus 522 ~~kTll~vT----HrL~~le~ 538 (573)
T COG4987 522 EGKTLLMVT----HRLRGLER 538 (573)
T ss_pred cCCeEEEEe----cccccHhh
Confidence 489999994 88875544
No 342
>PLN03130 ABC transporter C family member; Provisional
Probab=99.79 E-value=1.1e-19 Score=189.38 Aligned_cols=161 Identities=19% Similarity=0.160 Sum_probs=116.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-------CCCCC-CCC-----CChhhhhh---------HHH
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PVA-----MDIRELIS---------LED 61 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~~-----~~i~~~i~---------~~~ 61 (238)
.+||+||+|||||||+++|.|+++|++|+|.++|.|... ..+++ +|+ -|+|+|+. +.+
T Consensus 1267 kVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~~~tdeei~~ 1346 (1622)
T PLN03130 1267 KVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWE 1346 (1622)
T ss_pred EEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCCCCCHHHHHH
Confidence 589999999999999999999999999999999998753 33444 332 36888875 455
Q ss_pred HHHHcCCCCC-----Cchhhh----HHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC
Q 026486 62 VMEELGLGPN-----GGLIYC----MEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR 129 (238)
Q Consensus 62 ~l~~~~l~~~-----~~~~~~----~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~ 129 (238)
+++..++.+. .+.... -..+++|++ ++||||+.. +|++|||||||+ +|..+.+.+. +.+++.. +
T Consensus 1347 Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr--~p~ILILDEATSaLD~~Te~~Iq-~~I~~~~-~ 1422 (1622)
T PLN03130 1347 SLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLR--RSKILVLDEATAAVDVRTDALIQ-KTIREEF-K 1422 (1622)
T ss_pred HHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHc--CCCEEEEECCCCCCCHHHHHHHH-HHHHHHC-C
Confidence 5665554210 000000 013555544 899999999 999999999999 9999998888 7777764 4
Q ss_pred CCeEEEEEecccccccchhHHHhhhHHHHHHHHhhcCCeeeeec
Q 026486 130 NFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILS 173 (238)
Q Consensus 130 ~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~~~p~~~vls 173 (238)
++|+|+| +|.++...+ ++.+++...|.+.-..+|-+.++
T Consensus 1423 ~~TvI~I----AHRL~tI~~-~DrIlVLd~G~IvE~Gt~~eLl~ 1461 (1622)
T PLN03130 1423 SCTMLII----AHRLNTIID-CDRILVLDAGRVVEFDTPENLLS 1461 (1622)
T ss_pred CCEEEEE----eCChHHHHh-CCEEEEEECCEEEEeCCHHHHHh
Confidence 7888888 588876655 56666666666665555545443
No 343
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.79 E-value=1.7e-18 Score=138.59 Aligned_cols=130 Identities=15% Similarity=0.162 Sum_probs=98.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-------CCCCC-CC-----CCChhhhhh------------
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS------------ 58 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~-----~~~i~~~i~------------ 58 (238)
.++|+||+|||||||+|.++.++.|++|.+++.|.+... +.+.| .| .-+|+|++-
T Consensus 31 ~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVeDNlifP~~~r~rr~dr 110 (223)
T COG4619 31 FIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQIRNRRPDR 110 (223)
T ss_pred eEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchhhccccchHHhccCCCh
Confidence 478999999999999999999999999999999988743 22333 11 113444432
Q ss_pred --HHHHHHHcCCCCCCchhhhHHhhhhh--HHHHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH-hCCCe
Q 026486 59 --LEDVMEELGLGPNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK-SRNFN 132 (238)
Q Consensus 59 --~~~~l~~~~l~~~~~~~~~~~~~~~~--~s~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~-~~~~t 132 (238)
+.+.+++++++..- +......++++ ++.+|+|.|.. -|++|+|||||+ ||+.+.+.+- +++.++. .++..
T Consensus 111 ~aa~~llar~~l~~~~-L~k~it~lSGGE~QriAliR~Lq~--~P~ILLLDE~TsALD~~nkr~ie-~mi~~~v~~q~vA 186 (223)
T COG4619 111 AAALDLLARFALPDSI-LTKNITELSGGEKQRIALIRNLQF--MPKILLLDEITSALDESNKRNIE-EMIHRYVREQNVA 186 (223)
T ss_pred HHHHHHHHHcCCchhh-hcchhhhccchHHHHHHHHHHhhc--CCceEEecCchhhcChhhHHHHH-HHHHHHhhhhceE
Confidence 67788999987642 11122344444 33899999998 999999999999 9999999988 7777776 56788
Q ss_pred EEEEE
Q 026486 133 VCAVY 137 (238)
Q Consensus 133 vi~v~ 137 (238)
++.|+
T Consensus 187 v~WiT 191 (223)
T COG4619 187 VLWIT 191 (223)
T ss_pred EEEEe
Confidence 88784
No 344
>PLN03073 ABC transporter F family; Provisional
Probab=99.79 E-value=1.6e-19 Score=175.63 Aligned_cols=137 Identities=17% Similarity=0.120 Sum_probs=94.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCCCCCCC-CC----CCChhhh--------------hhHHHHHH
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDY-PV----AMDIREL--------------ISLEDVME 64 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~-~~----~~~i~~~--------------i~~~~~l~ 64 (238)
+++|+||||||||||+++|+|+++|++|+|.+.+.. .++| +| ..++.++ -.+.++++
T Consensus 537 ~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~----~igyv~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~ 612 (718)
T PLN03073 537 RIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKV----RMAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLG 612 (718)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCce----eEEEEeccccccCCcchhHHHHHHHhcCCCCHHHHHHHHH
Confidence 689999999999999999999999999999875421 1222 11 0111110 12567888
Q ss_pred HcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEEeccc
Q 026486 65 ELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDS 141 (238)
Q Consensus 65 ~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~tvi~v~l~d~ 141 (238)
.+++.+..... ....+++|++ ++||++++. +|++|||||||+ ||+.++..+. +.+.++ +.++|+| |
T Consensus 613 ~~gl~~~~~~~-~~~~LSgGqkqRvaLAraL~~--~p~lLLLDEPT~~LD~~s~~~l~-~~L~~~---~gtvIiv----S 681 (718)
T PLN03073 613 SFGVTGNLALQ-PMYTLSGGQKSRVAFAKITFK--KPHILLLDEPSNHLDLDAVEALI-QGLVLF---QGGVLMV----S 681 (718)
T ss_pred HCCCChHHhcC-CccccCHHHHHHHHHHHHHhc--CCCEEEEcCCCCCCCHHHHHHHH-HHHHHc---CCEEEEE----E
Confidence 89886421111 1234666654 899999999 999999999999 9999998776 555543 3477777 4
Q ss_pred ccccchhHHHhhhH
Q 026486 142 QFITDVTKFISGCM 155 (238)
Q Consensus 142 ~~~~d~~~~~~~~l 155 (238)
|.......+++.++
T Consensus 682 Hd~~~i~~~~drv~ 695 (718)
T PLN03073 682 HDEHLISGSVDELW 695 (718)
T ss_pred CCHHHHHHhCCEEE
Confidence 77665566655443
No 345
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.78 E-value=2.2e-19 Score=186.79 Aligned_cols=137 Identities=20% Similarity=0.178 Sum_probs=101.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-------CCCCC-CCC-----CChhhhhh---------HHH
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PVA-----MDIRELIS---------LED 61 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~~-----~~i~~~i~---------~~~ 61 (238)
.+||+|++|||||||+++|.|+++|++|+|.++|.|... ..+++ +|+ -|+|+|++ +.+
T Consensus 1314 kiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~ 1393 (1522)
T TIGR00957 1314 KVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWW 1393 (1522)
T ss_pred EEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCcccCCCHHHHHH
Confidence 589999999999999999999999999999999998754 33444 332 36888775 445
Q ss_pred HHHHcCCCCC-----CchhhhH----HhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC
Q 026486 62 VMEELGLGPN-----GGLIYCM----EHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR 129 (238)
Q Consensus 62 ~l~~~~l~~~-----~~~~~~~----~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~ 129 (238)
+++..++.+. .+..... ..+++|++ .+|||++.. +|++|||||||+ +|..+...+. +.+++.. +
T Consensus 1394 al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr--~~~ILiLDEaTSalD~~Te~~Iq-~~l~~~~-~ 1469 (1522)
T TIGR00957 1394 ALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLR--KTKILVLDEATAAVDLETDNLIQ-STIRTQF-E 1469 (1522)
T ss_pred HHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHc--CCCEEEEECCcccCCHHHHHHHH-HHHHHHc-C
Confidence 6666555321 0011000 23455544 899999999 999999999998 9999998887 7777653 4
Q ss_pred CCeEEEEEecccccccchh
Q 026486 130 NFNVCAVYLLDSQFITDVT 148 (238)
Q Consensus 130 ~~tvi~v~l~d~~~~~d~~ 148 (238)
++|+|+| +|.++...
T Consensus 1470 ~~TvI~I----AHRl~ti~ 1484 (1522)
T TIGR00957 1470 DCTVLTI----AHRLNTIM 1484 (1522)
T ss_pred CCEEEEE----ecCHHHHH
Confidence 7888888 58775433
No 346
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.78 E-value=1.6e-19 Score=147.56 Aligned_cols=158 Identities=16% Similarity=0.312 Sum_probs=113.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEee-ecCCC--------CCCC-------CCCCCChhhhhh---------
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN-LDPAA--------ENFD-------YPVAMDIRELIS--------- 58 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~-~d~~~--------~~~~-------~~~~~~i~~~i~--------- 58 (238)
.-+||||||+||||++..|+|--+|+.|+|++.| .|... ..++ .+.+.++++++.
T Consensus 33 lr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v 112 (249)
T COG4674 33 LRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSV 112 (249)
T ss_pred EEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhccCccccCCeehhhccHHHHHHHHhcCCcch
Confidence 3589999999999999999999999999999999 66532 1111 134567777764
Q ss_pred ---------------HHHHHHHcCCCCCCchhhhHHhhhhhHHHHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHH
Q 026486 59 ---------------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (238)
Q Consensus 59 ---------------~~~~l~~~~l~~~~~~~~~~~~~~~~~s~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~l 122 (238)
+++++...||++......+ .++.+++.|+.-.+....+|++|++|||.+ +--....+.. ++
T Consensus 113 ~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~--~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~ta-eL 189 (249)
T COG4674 113 FASLFARLRAEERRRIDELLATIGLGDERDRLAA--LLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTA-EL 189 (249)
T ss_pred HHHhhhhcChhHHHHHHHHHHHcccchhhhhhhh--hhccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHH-HH
Confidence 8889999999987655433 466777677655544333999999999998 6655566767 99
Q ss_pred HHHHHhCCCeEEEEEecccccccchhHHHhhhHHHHHHHHhhcCCeeeeecccccccchhhhh
Q 026486 123 VDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIE 185 (238)
Q Consensus 123 l~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~~~p~~~vlsk~dll~~~~~l~ 185 (238)
++.+++ +.++++| -||+.++...+ .++.|+.....+... .++
T Consensus 190 l~~la~-~hsilVV-EHDM~Fvr~~A------------------~~VTVlh~G~VL~EG-sld 231 (249)
T COG4674 190 LKSLAG-KHSILVV-EHDMGFVREIA------------------DKVTVLHEGSVLAEG-SLD 231 (249)
T ss_pred HHHHhc-CceEEEE-eccHHHHHHhh------------------heeEEEeccceeecc-cHH
Confidence 999964 4666666 56666654333 266777777666544 443
No 347
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.78 E-value=1.2e-18 Score=180.28 Aligned_cols=135 Identities=18% Similarity=0.192 Sum_probs=100.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcC------------------------------------------------------C
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCET------------------------------------------------------V 29 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~------------------------------------------------------~ 29 (238)
.++|+||+||||||++++|.|++.| +
T Consensus 1196 ~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1275 (1466)
T PTZ00265 1196 TTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKN 1275 (1466)
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccccccccccCCC
Confidence 6899999999999999999999998 6
Q ss_pred CceEEEeeecCCC-------CCCCC-CC-----CCChhhhhh----------HHHHHHHcCCCC------CCch--h-hh
Q 026486 30 RRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------LEDVMEELGLGP------NGGL--I-YC 77 (238)
Q Consensus 30 ~G~i~i~~~d~~~-------~~~~~-~~-----~~~i~~~i~----------~~~~l~~~~l~~------~~~~--~-~~ 77 (238)
+|+|.++|.|... +.++| +| +-||+|++. +.++++..++.. +|-. + ..
T Consensus 1276 ~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~ 1355 (1466)
T PTZ00265 1276 SGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPY 1355 (1466)
T ss_pred CCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCC
Confidence 9999999988743 34555 33 347888885 444555544421 1100 0 00
Q ss_pred HHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH-hCCCeEEEEEeccccccc
Q 026486 78 MEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK-SRNFNVCAVYLLDSQFIT 145 (238)
Q Consensus 78 ~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~-~~~~tvi~v~l~d~~~~~ 145 (238)
-..+++|++ ++|||||+. +|++|||||||+ ||..+.+.+. +.+.++. .+++|+|+| +|.++
T Consensus 1356 G~~LSGGQkQRIaIARALlr--~p~ILLLDEaTSaLD~~sE~~I~-~~L~~~~~~~~~TvIiI----aHRls 1420 (1466)
T PTZ00265 1356 GKSLSGGQKQRIAIARALLR--EPKILLLDEATSSLDSNSEKLIE-KTIVDIKDKADKTIITI----AHRIA 1420 (1466)
T ss_pred CCcCCHHHHHHHHHHHHHhc--CCCEEEEeCcccccCHHHHHHHH-HHHHHHhccCCCEEEEE----echHH
Confidence 023555554 899999999 999999999999 9999999988 7777775 357888888 48764
No 348
>PTZ00243 ABC transporter; Provisional
Probab=99.78 E-value=3.7e-19 Score=185.21 Aligned_cols=136 Identities=18% Similarity=0.239 Sum_probs=101.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-------CCCCC-CC-----CCChhhhhh---------HHH
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS---------LED 61 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~-----~~~i~~~i~---------~~~ 61 (238)
.+||+|++|||||||+++|.|+++|++|+|.++|.|... +.+++ +| +-||++|++ +.+
T Consensus 1338 kVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~~~sdeeI~~ 1417 (1560)
T PTZ00243 1338 KVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWA 1417 (1560)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCcccCCCHHHHHH
Confidence 579999999999999999999999999999999998753 33454 33 236888875 556
Q ss_pred HHHHcCCCCC-----CchhhhH----HhhhhhHH--HHHHHHHhccCC-CCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 026486 62 VMEELGLGPN-----GGLIYCM----EHLEDNLD--DWLAEELDNYLD-DDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (238)
Q Consensus 62 ~l~~~~l~~~-----~~~~~~~----~~~~~~~s--~~la~~l~~~~~-p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (238)
+++..++... .+..... ..+++|++ .+|||++.. + |++|||||||+ +|..+.+.+. +.+++..
T Consensus 1418 Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~--~~~~ILlLDEATSaLD~~te~~Iq-~~L~~~~- 1493 (1560)
T PTZ00243 1418 ALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLK--KGSGFILMDEATANIDPALDRQIQ-ATVMSAF- 1493 (1560)
T ss_pred HHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhc--CCCCEEEEeCCCccCCHHHHHHHH-HHHHHHC-
Confidence 6777666421 0000000 13555544 899999998 7 89999999999 9999999988 7777653
Q ss_pred CCCeEEEEEecccccccch
Q 026486 129 RNFNVCAVYLLDSQFITDV 147 (238)
Q Consensus 129 ~~~tvi~v~l~d~~~~~d~ 147 (238)
+++|+|+| +|.+...
T Consensus 1494 ~~~TvI~I----AHRl~ti 1508 (1560)
T PTZ00243 1494 SAYTVITI----AHRLHTV 1508 (1560)
T ss_pred CCCEEEEE----eccHHHH
Confidence 46888888 5877543
No 349
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.78 E-value=4.7e-19 Score=138.13 Aligned_cols=105 Identities=25% Similarity=0.270 Sum_probs=78.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-------CCCCC-------CCCCChhhhh---hHHHHHHH
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-------PVAMDIRELI---SLEDVMEE 65 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-------~~~~~i~~~i---~~~~~l~~ 65 (238)
-+++|+||||||||||+++|+|..+|++|+|.++|.++.. ..+.| .+..+++++. .++++++.
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~~~~~~~~~~l~~ 91 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRENESDERIEEVLKK 91 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHHHHHHHHHHHHHH
T ss_pred CEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 3689999999999999999999999999999999987654 12233 2244566554 37778888
Q ss_pred cCCCCCCchhh--hHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc
Q 026486 66 LGLGPNGGLIY--CMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ 109 (238)
Q Consensus 66 ~~l~~~~~~~~--~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~ 109 (238)
+++........ ....++++.+ ++||+++.. +|+++|+||||+
T Consensus 92 l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~--~~~llllDEPt~ 137 (137)
T PF00005_consen 92 LGLEDLLDRKIGQRASSLSGGEKQRLALARALLK--NPKLLLLDEPTN 137 (137)
T ss_dssp TTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHT--TSSEEEEESTTT
T ss_pred cccccccccccccccchhhHHHHHHHHHHHHHHc--CCCEEEEeCCCC
Confidence 88765222111 1134555543 899999999 999999999996
No 350
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.77 E-value=7.7e-19 Score=181.75 Aligned_cols=150 Identities=13% Similarity=0.137 Sum_probs=103.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEe-eecCCC-------CCCCC-CCC-----CChhhhhhH---------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV-NLDPAA-------ENFDY-PVA-----MDIRELISL--------- 59 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~-~~d~~~-------~~~~~-~~~-----~~i~~~i~~--------- 59 (238)
-.++|+||||||||||+++|+|+++|++|+|.++ |.+... +.++| +|+ .++++++..
T Consensus 412 e~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~ 491 (1466)
T PTZ00265 412 KTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLE 491 (1466)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccc
Confidence 3689999999999999999999999999999995 455421 23444 222 256665543
Q ss_pred ----------------------------------------------------------HHHHHHcCCCC------CCch-
Q 026486 60 ----------------------------------------------------------EDVMEELGLGP------NGGL- 74 (238)
Q Consensus 60 ----------------------------------------------------------~~~l~~~~l~~------~~~~- 74 (238)
.++++..++.. .+-.
T Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT 571 (1466)
T PTZ00265 492 ALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYET 571 (1466)
T ss_pred hhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCc
Confidence 22233333321 0000
Q ss_pred --hhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CCCeEEEEEecccccccchh
Q 026486 75 --IYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNVCAVYLLDSQFITDVT 148 (238)
Q Consensus 75 --~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~~tvi~v~l~d~~~~~d~~ 148 (238)
-.....+++|++ ++|||+++. +|++|||||||+ ||+.+...+. +.++++.+ .|.|+|+| +|.++..
T Consensus 572 ~vg~~g~~LSGGQkQRiaIARAll~--~P~ILlLDEpTSaLD~~se~~i~-~~L~~~~~~~g~TvIiI----sHrls~i- 643 (1466)
T PTZ00265 572 LVGSNASKLSGGQKQRISIARAIIR--NPKILILDEATSSLDNKSEYLVQ-KTINNLKGNENRITIII----AHRLSTI- 643 (1466)
T ss_pred eeCCCCCcCCHHHHHHHHHHHHHhc--CCCEEEEeCcccccCHHHHHHHH-HHHHHHhhcCCCEEEEE----eCCHHHH-
Confidence 000123555543 899999999 999999999999 9999999998 88888865 58888888 4877654
Q ss_pred HHHhhhHHHHHH
Q 026486 149 KFISGCMASLSA 160 (238)
Q Consensus 149 ~~~~~~l~~~~~ 160 (238)
..++.+++...|
T Consensus 644 ~~aD~Iivl~~g 655 (1466)
T PTZ00265 644 RYANTIFVLSNR 655 (1466)
T ss_pred HhCCEEEEEeCC
Confidence 456666555443
No 351
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=5.2e-19 Score=167.34 Aligned_cols=149 Identities=19% Similarity=0.273 Sum_probs=107.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-------CCCCC-CC-----CCChhhhhh-----------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~-----~~~i~~~i~----------- 58 (238)
-+++++|||||||||+.+.|..++.|++|+|.++|.|+.. ..+++ .| .-+|+|||.
T Consensus 495 e~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i 574 (716)
T KOG0058|consen 495 EVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEI 574 (716)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHH
Confidence 3789999999999999999999999999999999998754 22333 11 235777764
Q ss_pred --------HHHHHHHcC------CCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHH
Q 026486 59 --------LEDVMEELG------LGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (238)
Q Consensus 59 --------~~~~l~~~~------l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ 121 (238)
+++.+..+- .|+.| -.++++++ .+|||||.. +|.+|||||.|+ ||..+...+- +
T Consensus 575 ~~AAk~ANah~FI~~~p~gY~T~VGEkG------~qLSGGQKQRIAIARALlr--~P~VLILDEATSALDaeSE~lVq-~ 645 (716)
T KOG0058|consen 575 EAAAKMANAHEFITNFPDGYNTVVGEKG------SQLSGGQKQRIAIARALLR--NPRVLILDEATSALDAESEYLVQ-E 645 (716)
T ss_pred HHHHHHhChHHHHHhCccccccccCCcc------ccccchHHHHHHHHHHHhc--CCCEEEEechhhhcchhhHHHHH-H
Confidence 333333321 23333 23555544 999999999 999999999998 9999988777 7
Q ss_pred HHHHHHhCCCeEEEEEecccccccchhHHHhhhHHHHHHHHhhcCCeeeeecccccccch
Q 026486 122 FVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNK 181 (238)
Q Consensus 122 ll~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~~~p~~~vlsk~dll~~~ 181 (238)
.+.++.+ ++|+++| +|.++.+.. -.+|-|+.|.-+.+..
T Consensus 646 aL~~~~~-~rTVlvI----AHRLSTV~~----------------Ad~Ivvi~~G~V~E~G 684 (716)
T KOG0058|consen 646 ALDRLMQ-GRTVLVI----AHRLSTVRH----------------ADQIVVIDKGRVVEMG 684 (716)
T ss_pred HHHHhhc-CCeEEEE----ehhhhHhhh----------------ccEEEEEcCCeEEecc
Confidence 7877754 5888877 477753332 1266777777666543
No 352
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.77 E-value=7.5e-19 Score=181.39 Aligned_cols=159 Identities=13% Similarity=0.113 Sum_probs=113.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCC----cCCCceEEEeeecCCC------CCCCC-------CCCCChhhhhh-------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHC----ETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS------- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l----~~~~G~i~i~~~d~~~------~~~~~-------~~~~~i~~~i~------- 58 (238)
-.++|+||||||||||+|+|+|.. +|.+|+|.++|.++.. ..++| .+.++++|++.
T Consensus 88 e~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~f~~~~~~ 167 (1394)
T TIGR00956 88 ELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKT 167 (1394)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHHHHHHhCC
Confidence 368999999999999999999986 5689999999976521 12344 22356665542
Q ss_pred -----------------HHHHHHHcCCCCCCchhh---hHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhH
Q 026486 59 -----------------LEDVMEELGLGPNGGLIY---CMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTH 115 (238)
Q Consensus 59 -----------------~~~~l~~~~l~~~~~~~~---~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~ 115 (238)
++++++.+||.+...... ....+++|.+ +.||++++. +|+++++||||+ ||+.+.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~--~p~vlllDEPTsgLD~~~~ 245 (1394)
T TIGR00956 168 PQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLG--GAKIQCWDNATRGLDSATA 245 (1394)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHh--CCCEEEEeCCCCCcCHHHH
Confidence 134677788875432111 0123455543 999999999 999999999999 999999
Q ss_pred HHHHHHHHHHHHh-CCCeEEEEEecccccc-cchhHHHhhhHHHHHHHHhhcCCe
Q 026486 116 VPVLRNFVDHLKS-RNFNVCAVYLLDSQFI-TDVTKFISGCMASLSAMVQLELPH 168 (238)
Q Consensus 116 ~~~~~~ll~~l~~-~~~tvi~v~l~d~~~~-~d~~~~~~~~l~~~~~~~~~~~p~ 168 (238)
..++ +.++++++ .|.+++++. |.. .+...+++.+++...|.+....|.
T Consensus 246 ~~i~-~~L~~la~~~g~tvii~~----Hq~~~~i~~l~D~v~~L~~G~iv~~G~~ 295 (1394)
T TIGR00956 246 LEFI-RALKTSANILDTTPLVAI----YQCSQDAYELFDKVIVLYEGYQIYFGPA 295 (1394)
T ss_pred HHHH-HHHHHHHHhcCCEEEEEe----cCCCHHHHHhhceEEEEeCCeEEEECCH
Confidence 9999 99999976 478877663 554 455566777776666665555444
No 353
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=4.7e-18 Score=142.03 Aligned_cols=132 Identities=21% Similarity=0.273 Sum_probs=98.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCC--cCCCceEEEeeecCCC------------CCCCCCCC---CChhhhhh-------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHC--ETVRRTMHIVNLDPAA------------ENFDYPVA---MDIRELIS------- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l--~~~~G~i~i~~~d~~~------------~~~~~~~~---~~i~~~i~------- 58 (238)
.+.+|+||||||||||.++|+|+- +.++|+|.++|.|+.. -.++||+. +++.+++.
T Consensus 31 EvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~ 110 (251)
T COG0396 31 EVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARR 110 (251)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhh
Confidence 478999999999999999999985 7899999999998743 11334432 23333332
Q ss_pred ------------HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHH
Q 026486 59 ------------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV 123 (238)
Q Consensus 59 ------------~~~~l~~~~l~~~~~~~~~~~~~~~~~--s~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll 123 (238)
+++.++.+++.+.-..++.-+-++++- +..|+..++. +|++.|||||-+ ||..+-+.+. +-+
T Consensus 111 ~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~l--ePkl~ILDE~DSGLDIdalk~V~-~~i 187 (251)
T COG0396 111 GARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLL--EPKLAILDEPDSGLDIDALKIVA-EGI 187 (251)
T ss_pred ccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhc--CCCEEEecCCCcCccHHHHHHHH-HHH
Confidence 567888889887321111112233332 2778888888 999999999999 9999999888 999
Q ss_pred HHHHhCCCeEEEEE
Q 026486 124 DHLKSRNFNVCAVY 137 (238)
Q Consensus 124 ~~l~~~~~tvi~v~ 137 (238)
+++++.+.++++++
T Consensus 188 ~~lr~~~~~~liIT 201 (251)
T COG0396 188 NALREEGRGVLIIT 201 (251)
T ss_pred HHHhcCCCeEEEEe
Confidence 99988888888884
No 354
>PLN03140 ABC transporter G family member; Provisional
Probab=99.76 E-value=8.5e-19 Score=181.06 Aligned_cols=162 Identities=14% Similarity=0.150 Sum_probs=117.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCC---CceEEEeeecCCC----CCCCC-------CCCCChhhhhh----------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETV---RRTMHIVNLDPAA----ENFDY-------PVAMDIRELIS---------- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~---~G~i~i~~~d~~~----~~~~~-------~~~~~i~~~i~---------- 58 (238)
-.++|+||||||||||+++|+|.++|+ +|+|.++|.+... ..++| .+.+|++|++.
T Consensus 192 e~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~ 271 (1470)
T PLN03140 192 RMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGT 271 (1470)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHHHHhcCCCC
Confidence 368999999999999999999999998 9999999986532 22334 22456666553
Q ss_pred ----------------------------------------HHHHHHHcCCCCCCchh---hhHHhhhhhHH--HHHHHHH
Q 026486 59 ----------------------------------------LEDVMEELGLGPNGGLI---YCMEHLEDNLD--DWLAEEL 93 (238)
Q Consensus 59 ----------------------------------------~~~~l~~~~l~~~~~~~---~~~~~~~~~~s--~~la~~l 93 (238)
++++++.+||....... .....+++|++ +.+|+++
T Consensus 272 ~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL 351 (1470)
T PLN03140 272 RYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMI 351 (1470)
T ss_pred cccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhh
Confidence 13366677776422110 00123555543 8999999
Q ss_pred hccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CCCeEEEEEecccccc-cchhHHHhhhHHHHHHHHhhcCCeee
Q 026486 94 DNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNVCAVYLLDSQFI-TDVTKFISGCMASLSAMVQLELPHVN 170 (238)
Q Consensus 94 ~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~~tvi~v~l~d~~~~-~d~~~~~~~~l~~~~~~~~~~~p~~~ 170 (238)
+. +|+++++||||+ ||..+..+++ +.++++++ .|.|++++. |.. .+...+++.+++...|.+....|.-+
T Consensus 352 ~~--~p~vlllDEPTsGLDs~t~~~i~-~~Lr~la~~~g~Tviis~----Hqp~~~i~~lfD~vilL~~G~ivy~G~~~~ 424 (1470)
T PLN03140 352 VG--PTKTLFMDEISTGLDSSTTYQIV-KCLQQIVHLTEATVLMSL----LQPAPETFDLFDDIILLSEGQIVYQGPRDH 424 (1470)
T ss_pred cC--CCcEEEEeCCCcCccHHHHHHHH-HHHHHHHHhcCCEEEEEe----cCCCHHHHHHhheEEEeeCceEEEeCCHHH
Confidence 99 999999999999 9999999999 99999976 577877663 553 45667778787777777766666544
Q ss_pred e
Q 026486 171 I 171 (238)
Q Consensus 171 v 171 (238)
+
T Consensus 425 ~ 425 (1470)
T PLN03140 425 I 425 (1470)
T ss_pred H
Confidence 4
No 355
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.76 E-value=2.5e-18 Score=166.41 Aligned_cols=138 Identities=15% Similarity=0.114 Sum_probs=94.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecC-C--CCCCCCCCCCChhhhhh-----------------HHHHH
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP-A--AENFDYPVAMDIRELIS-----------------LEDVM 63 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~-~--~~~~~~~~~~~i~~~i~-----------------~~~~l 63 (238)
.++|+||||||||||+++|+|+++|++|+|.+++..- + .+. ++....++++++. +.+++
T Consensus 480 ~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~-~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l 558 (659)
T TIGR00954 480 HLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQR-PYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQIL 558 (659)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCC-CCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHH
Confidence 6899999999999999999999999999998754210 0 011 1111125555542 34667
Q ss_pred HHcCCCCCCchhh-------hHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeE
Q 026486 64 EELGLGPNGGLIY-------CMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNV 133 (238)
Q Consensus 64 ~~~~l~~~~~~~~-------~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~tv 133 (238)
+.+++.+...... ....+++|++ ++|||++.. +|+++|+||||+ ||+.+...+. +.+++ .|.|+
T Consensus 559 ~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~--~p~illLDEpts~LD~~~~~~l~-~~l~~---~~~tv 632 (659)
T TIGR00954 559 DNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYH--KPQFAILDECTSAVSVDVEGYMY-RLCRE---FGITL 632 (659)
T ss_pred HHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHc--CCCEEEEeCCccCCCHHHHHHHH-HHHHH---cCCEE
Confidence 7777754211100 0123555543 899999999 999999999999 9999988877 65544 47888
Q ss_pred EEEEecccccccchhHHHhh
Q 026486 134 CAVYLLDSQFITDVTKFISG 153 (238)
Q Consensus 134 i~v~l~d~~~~~d~~~~~~~ 153 (238)
|++ +|..+.. .+++.
T Consensus 633 I~i----sH~~~~~-~~~d~ 647 (659)
T TIGR00954 633 FSV----SHRKSLW-KYHEY 647 (659)
T ss_pred EEE----eCchHHH-HhCCE
Confidence 877 4776543 44443
No 356
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.75 E-value=9e-18 Score=149.67 Aligned_cols=155 Identities=17% Similarity=0.166 Sum_probs=109.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCCCCCC-CC-------CCCChhhh----------hhHHHHHH
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFD-YP-------VAMDIREL----------ISLEDVME 64 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~-~~-------~~~~i~~~----------i~~~~~l~ 64 (238)
-++.|+|.|||||||||+.+.|+++|++|+|.++|.++..++.. |. .++-..+. -.++.+++
T Consensus 350 elvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll~~e~~as~q~i~~~Lq 429 (546)
T COG4615 350 ELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLGPEGKASPQLIEKWLQ 429 (546)
T ss_pred cEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhhCCccCCChHHHHHHHH
Confidence 36889999999999999999999999999999999887654321 10 01100000 01566677
Q ss_pred HcCCCCC----CchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEE
Q 026486 65 ELGLGPN----GGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVY 137 (238)
Q Consensus 65 ~~~l~~~----~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~tvi~v~ 137 (238)
++.+... ++. ...-+++.+++ +++-.|+.. +.+++++||-.+ -||.-|+.+...++-.+++.|+||+.|+
T Consensus 430 rLel~~ktsl~d~~-fs~~kLStGQkKRlAll~AllE--eR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIs 506 (546)
T COG4615 430 RLELAHKTSLNDGR-FSNLKLSTGQKKRLALLLALLE--ERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAIS 506 (546)
T ss_pred HHHHhhhhcccCCc-ccccccccchHHHHHHHHHHHh--hCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEe
Confidence 6665432 222 22235666665 666667777 999999999999 9999999999889999988999998885
Q ss_pred ecccccccchhHHHhhhHHHHHHHHhhc
Q 026486 138 LLDSQFITDVTKFISGCMASLSAMVQLE 165 (238)
Q Consensus 138 l~d~~~~~d~~~~~~~~l~~~~~~~~~~ 165 (238)
||-|+.. ..++++-...|++.-.
T Consensus 507 -HDd~YF~----~ADrll~~~~G~~~e~ 529 (546)
T COG4615 507 -HDDHYFI----HADRLLEMRNGQLSEL 529 (546)
T ss_pred -cCchhhh----hHHHHHHHhcCceeec
Confidence 7777765 2344555555555433
No 357
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.74 E-value=1.5e-18 Score=180.20 Aligned_cols=151 Identities=20% Similarity=0.231 Sum_probs=108.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-------CCCCC-CC-----CCChhhhhh---------HHH
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS---------LED 61 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~-----~~~i~~~i~---------~~~ 61 (238)
.++|+|++|||||||+++|.|+++ .+|+|.++|.|... +.++| +| .-|+|+|++ +.+
T Consensus 1247 kvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~ 1325 (1490)
T TIGR01271 1247 RVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWK 1325 (1490)
T ss_pred EEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcccCCCHHHHHH
Confidence 479999999999999999999997 79999999998753 33444 33 236888885 566
Q ss_pred HHHHcCCCCC-----CchhhhH----HhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC
Q 026486 62 VMEELGLGPN-----GGLIYCM----EHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR 129 (238)
Q Consensus 62 ~l~~~~l~~~-----~~~~~~~----~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~ 129 (238)
+++..++... +++.... ..+++|++ ++|||++.. +|++|||||||+ +|..+...+. +.+++.. .
T Consensus 1326 aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr--~~~ILlLDEaTS~lD~~Te~~I~-~~L~~~~-~ 1401 (1490)
T TIGR01271 1326 VAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILS--KAKILLLDEPSAHLDPVTLQIIR-KTLKQSF-S 1401 (1490)
T ss_pred HHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhC--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHc-C
Confidence 7777776421 1111101 12444443 899999999 999999999998 9999998888 7777653 4
Q ss_pred CCeEEEEEecccccccchhHHHhhhHHHHHHHHhh
Q 026486 130 NFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQL 164 (238)
Q Consensus 130 ~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~ 164 (238)
++|+|+| +|.+..... ++.+++...|.+.-
T Consensus 1402 ~~TvI~I----aHRl~ti~~-~DrIlvL~~G~ivE 1431 (1490)
T TIGR01271 1402 NCTVILS----EHRVEALLE-CQQFLVIEGSSVKQ 1431 (1490)
T ss_pred CCEEEEE----ecCHHHHHh-CCEEEEEECCEEEE
Confidence 7898888 588765544 45555555554443
No 358
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.74 E-value=1.2e-17 Score=157.08 Aligned_cols=134 Identities=16% Similarity=0.148 Sum_probs=93.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeee-cCC---CCCCCCCCCCChhhh----------hhHHHHHHHcCCC
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL-DPA---AENFDYPVAMDIREL----------ISLEDVMEELGLG 69 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~-d~~---~~~~~~~~~~~i~~~----------i~~~~~l~~~~l~ 69 (238)
-++|+||||+|||||+|.|+|...|.+|+|.+... .++ .+.-.+.++.++.+. ..+...+..+++.
T Consensus 350 riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~ 429 (530)
T COG0488 350 RIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFT 429 (530)
T ss_pred EEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCC
Confidence 47999999999999999999999999999987531 110 000011122233222 2377889999998
Q ss_pred CCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEEeccccccc
Q 026486 70 PNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFIT 145 (238)
Q Consensus 70 ~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~tvi~v~l~d~~~~~ 145 (238)
+... ......+++|.+ +.+|+.+.. +|.+|||||||+ ||+.+...+- +.+. +...++++|+ ||-+++.
T Consensus 430 ~~~~-~~~v~~LSGGEk~Rl~La~ll~~--~pNvLiLDEPTNhLDi~s~~aLe-~aL~---~f~Gtvl~VS-HDr~Fl~ 500 (530)
T COG0488 430 GEDQ-EKPVGVLSGGEKARLLLAKLLLQ--PPNLLLLDEPTNHLDIESLEALE-EALL---DFEGTVLLVS-HDRYFLD 500 (530)
T ss_pred hHHH-hCchhhcCHhHHHHHHHHHHhcc--CCCEEEEcCCCccCCHHHHHHHH-HHHH---hCCCeEEEEe-CCHHHHH
Confidence 7654 334456777765 788888888 999999999999 9999986655 5444 4456888884 5544443
No 359
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.73 E-value=4.8e-18 Score=176.57 Aligned_cols=153 Identities=16% Similarity=0.136 Sum_probs=101.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCCCCCCCCCCCChhhhhh---------HHHHHHHcCCC-----
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELIS---------LEDVMEELGLG----- 69 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~~~~~~i~~~i~---------~~~~l~~~~l~----- 69 (238)
.++|+||||||||||+++|+|+++|++|+|.++|.-.....-++..+.+++|++. ++++++..++.
T Consensus 454 ~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g~iayv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~L~~~l~~ 533 (1490)
T TIGR01271 454 LLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDIAL 533 (1490)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEEEEeCCCccCCccHHHHHHhccccchHHHHHHHHHHhHHHHHHh
Confidence 5899999999999999999999999999999987310000111212236777764 23334333321
Q ss_pred -CCCchh---hhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEEecccc
Q 026486 70 -PNGGLI---YCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQ 142 (238)
Q Consensus 70 -~~~~~~---~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~tvi~v~l~d~~ 142 (238)
|.+... ..-..+++|++ ++||||+.. +|+++|||||++ ||+.+.+.++..++..+. +++|+|+|+ |
T Consensus 534 l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~--~~~illLDep~saLD~~~~~~i~~~~l~~~~-~~~tvilvt----H 606 (1490)
T TIGR01271 534 FPEKDKTVLGEGGITLSGGQRARISLARAVYK--DADLYLLDSPFTHLDVVTEKEIFESCLCKLM-SNKTRILVT----S 606 (1490)
T ss_pred ccccccccccCcCCCcCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCCeEEEEe----C
Confidence 111100 00123555554 999999999 999999999999 999999999954666664 478888884 6
Q ss_pred cccchhHHHhhhHHHHHHHHhh
Q 026486 143 FITDVTKFISGCMASLSAMVQL 164 (238)
Q Consensus 143 ~~~d~~~~~~~~l~~~~~~~~~ 164 (238)
.+.... .++.+++...+.+..
T Consensus 607 ~~~~~~-~ad~ii~l~~g~i~~ 627 (1490)
T TIGR01271 607 KLEHLK-KADKILLLHEGVCYF 627 (1490)
T ss_pred ChHHHH-hCCEEEEEECCEEEE
Confidence 665443 356555554444433
No 360
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.73 E-value=9.6e-18 Score=139.59 Aligned_cols=131 Identities=11% Similarity=0.079 Sum_probs=85.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCC---------ceEEEeeecCCC----CCCCC-CCCCCh----hhhhhHHHHHHH
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVR---------RTMHIVNLDPAA----ENFDY-PVAMDI----RELISLEDVMEE 65 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~---------G~i~i~~~d~~~----~~~~~-~~~~~i----~~~i~~~~~l~~ 65 (238)
+++|+||||||||||+++++|++++.. |++.+.|.++.. ..+++ +|+.+. ...-.+.++++.
T Consensus 24 ~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~~~~~~~~~~~~l~~ 103 (197)
T cd03278 24 LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRYSIISQGDVSEIIEA 103 (197)
T ss_pred cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCceeEEehhhHHHHHhC
Confidence 578999999999999999999986653 356666655421 12233 222211 111235666666
Q ss_pred cCCCCCCchhhhHHhhhhhHH--HHHHHHHhc--cCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEEecc
Q 026486 66 LGLGPNGGLIYCMEHLEDNLD--DWLAEELDN--YLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLD 140 (238)
Q Consensus 66 ~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~--~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~tvi~v~l~d 140 (238)
.... ......++++++ +++|++++. ..+|+++++|||++ +|+.....++ ++++++.+ +.++|++
T Consensus 104 ---~~~~--~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~-~~l~~~~~-~~tiIii---- 172 (197)
T cd03278 104 ---PGKK--VQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFA-RLLKEFSK-ETQFIVI---- 172 (197)
T ss_pred ---CCcc--ccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHH-HHHHHhcc-CCEEEEE----
Confidence 1111 112234555543 888888762 12679999999998 9999999999 88998854 6777776
Q ss_pred ccccc
Q 026486 141 SQFIT 145 (238)
Q Consensus 141 ~~~~~ 145 (238)
+|...
T Consensus 173 tH~~~ 177 (197)
T cd03278 173 THRKG 177 (197)
T ss_pred ECCHH
Confidence 36554
No 361
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.72 E-value=6.3e-17 Score=127.57 Aligned_cols=131 Identities=15% Similarity=0.114 Sum_probs=100.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCC---CceEEEeeecC----CC-CCCCC-------CCCCChhhhhh---------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETV---RRTMHIVNLDP----AA-ENFDY-------PVAMDIRELIS--------- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~---~G~i~i~~~d~----~~-~~~~~-------~~~~~i~~~i~--------- 58 (238)
-++-++||+|||||||+.-+.|.+.++ +|++.+++.+. ++ +.++. ++.+++.+++-
T Consensus 29 eivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG 108 (213)
T COG4136 29 EIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHLSVGQNLLFALPATLKG 108 (213)
T ss_pred cEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeecccccccccccccceEEecCccccc
Confidence 367899999999999999999999875 79999998764 22 22221 33444544432
Q ss_pred ------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC
Q 026486 59 ------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR 129 (238)
Q Consensus 59 ------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~ 129 (238)
++..+++.|+...-..- -+.++++++ +++-|++.. .|+.+++|||++ ||..-+.++....+.+.+..
T Consensus 109 ~aRr~~a~aAL~~~gL~g~f~~d--P~tlSGGQrARvaL~R~Lla--~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~a 184 (213)
T COG4136 109 NARRNAANAALERSGLDGAFHQD--PATLSGGQRARVALLRALLA--QPKALLLDEPFSRLDVALRDQFRQWVFSEVRAA 184 (213)
T ss_pred HHHHhhHHHHHHHhccchhhhcC--hhhcCcchHHHHHHHHHHHh--CcceeeeCCchhHHHHHHHHHHHHHHHHHHHhc
Confidence 77889999987542221 135666665 889999999 999999999999 99999999886677778778
Q ss_pred CCeEEEEE
Q 026486 130 NFNVCAVY 137 (238)
Q Consensus 130 ~~tvi~v~ 137 (238)
|..++.|+
T Consensus 185 giPtv~VT 192 (213)
T COG4136 185 GIPTVQVT 192 (213)
T ss_pred CCCeEEEe
Confidence 99998884
No 362
>PLN03073 ABC transporter F family; Provisional
Probab=99.72 E-value=3.5e-17 Score=159.37 Aligned_cols=146 Identities=14% Similarity=0.190 Sum_probs=96.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCC---cCCCceEEEeeecCCCCC---------------------CCC-CCC--------
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHC---ETVRRTMHIVNLDPAAEN---------------------FDY-PVA-------- 50 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l---~~~~G~i~i~~~d~~~~~---------------------~~~-~~~-------- 50 (238)
.+||+||||||||||+++|+|.. .|.+|+|.+.++++.... .++ ++.
T Consensus 205 ~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~ 284 (718)
T PLN03073 205 HYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFETE 284 (718)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 58999999999999999999864 578899987665421110 000 000
Q ss_pred -----------CC---hhhhh-----------------hHHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccC
Q 026486 51 -----------MD---IRELI-----------------SLEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYL 97 (238)
Q Consensus 51 -----------~~---i~~~i-----------------~~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~ 97 (238)
.+ +.+.+ .+.+++..+|+.+.. .......++++++ ++||++++.
T Consensus 285 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~~~~-~~~~~~~LSgG~k~rv~LA~aL~~-- 361 (718)
T PLN03073 285 TGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTPEM-QVKATKTFSGGWRMRIALARALFI-- 361 (718)
T ss_pred ccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCChHH-HhCchhhCCHHHHHHHHHHHHHhc--
Confidence 00 00000 133455566664221 1112345666654 899999999
Q ss_pred CCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccchhHHHhhhHHHHHH
Q 026486 98 DDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSA 160 (238)
Q Consensus 98 ~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~ 160 (238)
+|++|||||||+ ||+.++..+. ++++++ +.++|+| +|.......+++.++....+
T Consensus 362 ~p~lLlLDEPt~~LD~~~~~~l~-~~L~~~---~~tviiv----sHd~~~l~~~~d~i~~l~~g 417 (718)
T PLN03073 362 EPDLLLLDEPTNHLDLHAVLWLE-TYLLKW---PKTFIVV----SHAREFLNTVVTDILHLHGQ 417 (718)
T ss_pred CCCEEEEECCCCCCCHHHHHHHH-HHHHHc---CCEEEEE----ECCHHHHHHhCCEEEEEECC
Confidence 999999999999 9999998887 777665 6688777 47776666666655544433
No 363
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.71 E-value=1.8e-17 Score=133.06 Aligned_cols=131 Identities=18% Similarity=0.239 Sum_probs=94.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCC---------------CCCCCC-CCCC------Chhhhh---
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA---------------AENFDY-PVAM------DIRELI--- 57 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~---------------~~~~~~-~~~~------~i~~~i--- 57 (238)
-|+++-||+||||||++|++.+.+.|++|+|.+.-.+-. ...++| .|.+ .--|.+
T Consensus 38 ECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaeP 117 (235)
T COG4778 38 ECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEP 117 (235)
T ss_pred cEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhH
Confidence 589999999999999999999999999999998643211 133444 1211 101111
Q ss_pred -------------hHHHHHHHcCCCCCCchhhhHHhhhhh--HHHHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHH
Q 026486 58 -------------SLEDVMEELGLGPNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (238)
Q Consensus 58 -------------~~~~~l~~~~l~~~~~~~~~~~~~~~~--~s~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ 121 (238)
.+.+.+.++++.+......+. .++++ +++.|||.++. +-++|+|||||+ ||..++..+. +
T Consensus 118 ll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPa-TFSGGEqQRVNIaRgfiv--d~pILLLDEPTasLDa~Nr~vVv-e 193 (235)
T COG4778 118 LLARGVPREVARAKAADLLTRLNLPERLWSLAPA-TFSGGEQQRVNIARGFIV--DYPILLLDEPTASLDATNRAVVV-E 193 (235)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCc-ccCCchheehhhhhhhhc--cCceEEecCCcccccccchHHHH-H
Confidence 156677777776532222221 23332 34999999999 999999999998 9999999999 9
Q ss_pred HHHHHHhCCCeEEEEE
Q 026486 122 FVDHLKSRNFNVCAVY 137 (238)
Q Consensus 122 ll~~l~~~~~tvi~v~ 137 (238)
++++-+.+|..++-+|
T Consensus 194 li~e~Ka~GaAlvGIF 209 (235)
T COG4778 194 LIREAKARGAALVGIF 209 (235)
T ss_pred HHHHHHhcCceEEEee
Confidence 9999888899998886
No 364
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.71 E-value=5.9e-17 Score=130.63 Aligned_cols=135 Identities=16% Similarity=0.182 Sum_probs=99.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC----------------CCCCC-CCC------------CCh
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------------ENFDY-PVA------------MDI 53 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~----------------~~~~~-~~~------------~~i 53 (238)
-+.+|+|++|||||||+++|++.+.|+.|+|.+...+-.. -..++ .|+ -+|
T Consensus 33 eVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~Ni 112 (258)
T COG4107 33 EVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNI 112 (258)
T ss_pred cEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHHHHHhhhccceeecCccccceeeeccCCcc
Confidence 4689999999999999999999999999999997643210 11222 110 011
Q ss_pred hhh-----------h--hHHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHH
Q 026486 54 REL-----------I--SLEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVP 117 (238)
Q Consensus 54 ~~~-----------i--~~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~ 117 (238)
.|. | .+.++++++.+++..-.-.+ ..++++++ ..|||.+.. .|+++++||||. ||...+..
T Consensus 113 GERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~P-rtFSGGMqQRLQiARnLVt--~PrLvfMDEPTGGLDVSVQAR 189 (258)
T COG4107 113 GERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLP-RTFSGGMQQRLQIARNLVT--RPRLVFMDEPTGGLDVSVQAR 189 (258)
T ss_pred chhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcc-cccchHHHHHHHHHHHhcc--CCceEEecCCCCCcchhhHHH
Confidence 111 1 26789999998875321111 23556554 889999999 999999999998 99999999
Q ss_pred HHHHHHHHHHh-CCCeEEEEEeccccccc
Q 026486 118 VLRNFVDHLKS-RNFNVCAVYLLDSQFIT 145 (238)
Q Consensus 118 ~~~~ll~~l~~-~~~tvi~v~l~d~~~~~ 145 (238)
++ ++++.|.. .+..+++|+ |.+.
T Consensus 190 LL-DllrgLv~~l~la~viVT----HDl~ 213 (258)
T COG4107 190 LL-DLLRGLVRELGLAVVIVT----HDLA 213 (258)
T ss_pred HH-HHHHHHHHhcCceEEEEe----chhH
Confidence 99 99999975 588888884 6664
No 365
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.71 E-value=8.1e-17 Score=137.51 Aligned_cols=131 Identities=15% Similarity=0.178 Sum_probs=81.2
Q ss_pred eEEEEcCCCCcHHHHHHHHH----------------hCCcCCCc--------eEEEeeecC----CC------CCCCC-C
Q 026486 4 AQLVIGPAGSGKSTYCSSLY----------------RHCETVRR--------TMHIVNLDP----AA------ENFDY-P 48 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~----------------g~l~~~~G--------~i~i~~~d~----~~------~~~~~-~ 48 (238)
+++|+||||||||||+++|+ +++.+.+| ++.+.|.+. .. +.+++ +
T Consensus 25 ~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~i~r~ig~~~ 104 (243)
T cd03272 25 HNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIFDNSDNRFPIDKEEVRLRRTIGLKK 104 (243)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEEEcCCCccCCCCCEEEEEEEEECCC
Confidence 68999999999999999998 44555555 555555321 11 11222 1
Q ss_pred CCCChhh-hh---hHHHHHHHcCCCCCCc------------------hhhhHHhhhhhHH--HHHHHHHhc--cCCCCEE
Q 026486 49 VAMDIRE-LI---SLEDVMEELGLGPNGG------------------LIYCMEHLEDNLD--DWLAEELDN--YLDDDYL 102 (238)
Q Consensus 49 ~~~~i~~-~i---~~~~~l~~~~l~~~~~------------------~~~~~~~~~~~~s--~~la~~l~~--~~~p~~l 102 (238)
+...+.+ .. .+...++.+++.+... .......++++++ ++||++++. ..+|+++
T Consensus 105 ~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~l~~l~~~~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~il 184 (243)
T cd03272 105 DEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGKINSLTNMKQDEQQEMQQLSGGQKSLVALALIFAIQKCDPAPFY 184 (243)
T ss_pred CEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCchHHhhhccccccccccccCHHHHHHHHHHHHHHHhccCCCCEE
Confidence 1111111 11 2455666666654210 0011233444443 889999962 1268999
Q ss_pred EEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 026486 103 VFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (238)
Q Consensus 103 ilDEPt~-LD~~~~~~~~~~ll~~l~~~~~tvi~v 136 (238)
++|||++ +|+.+++.++ +.++++.+ +.+++++
T Consensus 185 llDEp~~~ld~~~~~~~~-~~l~~~~~-~~~ii~~ 217 (243)
T cd03272 185 LFDEIDAALDAQYRTAVA-NMIKELSD-GAQFITT 217 (243)
T ss_pred EEECCccCCCHHHHHHHH-HHHHHHhC-CCEEEEE
Confidence 9999999 9999999998 88888855 6666555
No 366
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.71 E-value=1.8e-17 Score=172.62 Aligned_cols=157 Identities=18% Similarity=0.164 Sum_probs=101.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCCCCCCCCCCCChhhhhh---------HHHHHHHcC------C
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELIS---------LEDVMEELG------L 68 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~~~~~~i~~~i~---------~~~~l~~~~------l 68 (238)
.++|+||||||||||+++|+|+++|++|+|.++|.--....-++..+.+++|++. ++++++..+ .
T Consensus 666 ~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~yv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~ 745 (1522)
T TIGR00957 666 LVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQAWIQNDSLRENILFGKALNEKYYQQVLEACALLPDLEI 745 (1522)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCccCCcEEEECCEEEEEcCCccccCCcHHHHhhcCCccCHHHHHHHHHHhCCHHHHHh
Confidence 5899999999999999999999999999999876210000011222346777764 233333322 2
Q ss_pred CCCCchh---hhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH--hCCCeEEEEEecc
Q 026486 69 GPNGGLI---YCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK--SRNFNVCAVYLLD 140 (238)
Q Consensus 69 ~~~~~~~---~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~--~~~~tvi~v~l~d 140 (238)
-|.|... ..-..+++|++ ++||||+.. +|++++||||++ ||+.+.+.++ +.+.... .+++|+|+|+
T Consensus 746 ~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~--~~~illLDEp~saLD~~~~~~i~-~~l~~~~~~~~~~tvIlvT--- 819 (1522)
T TIGR00957 746 LPSGDRTEIGEKGVNLSGGQKQRVSLARAVYS--NADIYLFDDPLSAVDAHVGKHIF-EHVIGPEGVLKNKTRILVT--- 819 (1522)
T ss_pred cCCCCCceecCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEcCCccccCHHHHHHHH-HHHhhhhhhhcCCEEEEEe---
Confidence 2222100 00123556554 999999999 999999999999 9999999999 5443321 2468888884
Q ss_pred cccccchhHHHhhhHHHHHHHHhhcCCe
Q 026486 141 SQFITDVTKFISGCMASLSAMVQLELPH 168 (238)
Q Consensus 141 ~~~~~d~~~~~~~~l~~~~~~~~~~~p~ 168 (238)
|....... ++.++....|.+....++
T Consensus 820 -H~~~~l~~-~D~ii~l~~G~i~~~g~~ 845 (1522)
T TIGR00957 820 -HGISYLPQ-VDVIIVMSGGKISEMGSY 845 (1522)
T ss_pred -CChhhhhh-CCEEEEecCCeEEeeCCH
Confidence 55544333 565555555555444443
No 367
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.71 E-value=2.7e-17 Score=141.56 Aligned_cols=132 Identities=16% Similarity=0.166 Sum_probs=84.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCC-CceEEEeee-cCC--------C--------CC---------CCCCCCCChhh-
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETV-RRTMHIVNL-DPA--------A--------EN---------FDYPVAMDIRE- 55 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~-~G~i~i~~~-d~~--------~--------~~---------~~~~~~~~i~~- 55 (238)
+++|+|||||||||++++|++++.+. .|++.+.+. +.- . ++ ....+.+++.+
T Consensus 27 ~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~r~ 106 (251)
T cd03273 27 FNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVTRQ 106 (251)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEEEE
Confidence 57999999999999999999998775 446655443 110 0 00 00001111111
Q ss_pred -----------------hhhHHHHHHHcCCCCCCc------------------hhhhHHhhhhhHH--HHHHHHHhc--c
Q 026486 56 -----------------LISLEDVMEELGLGPNGG------------------LIYCMEHLEDNLD--DWLAEELDN--Y 96 (238)
Q Consensus 56 -----------------~i~~~~~l~~~~l~~~~~------------------~~~~~~~~~~~~s--~~la~~l~~--~ 96 (238)
.-.+.++++.+++..+.. .......++++++ +++|++++. .
T Consensus 107 I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~~~ 186 (251)
T cd03273 107 IVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILALLLF 186 (251)
T ss_pred EEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHHhhc
Confidence 012677889999863210 0011123444443 788888862 1
Q ss_pred CCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEE
Q 026486 97 LDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVY 137 (238)
Q Consensus 97 ~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~tvi~v~ 137 (238)
.+|+++++||||+ +|+..+..+. ++++++. +|.++|++.
T Consensus 187 ~~~~illlDEPt~~ld~~~~~~~~-~~l~~~~-~g~~ii~iS 226 (251)
T cd03273 187 KPAPMYILDEVDAALDLSHTQNIG-RMIKTHF-KGSQFIVVS 226 (251)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHH-HHHHHHc-CCCEEEEEE
Confidence 1789999999998 9999999999 8888884 477787773
No 368
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.71 E-value=4.3e-17 Score=138.40 Aligned_cols=87 Identities=14% Similarity=0.083 Sum_probs=61.7
Q ss_pred HHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCC--CEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEE
Q 026486 60 EDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDD--DYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVC 134 (238)
Q Consensus 60 ~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p--~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~tvi 134 (238)
.+.++.+++.+.....+. ..++++++ +.+|++++. +| +++|+||||+ ||+.++..+. +++++++++|.+++
T Consensus 118 ~~~l~~~~l~~~~~~~~~-~~LSgG~~qrv~laral~~--~p~~~llllDEPt~gLD~~~~~~l~-~~l~~~~~~g~tii 193 (226)
T cd03270 118 LGFLVDVGLGYLTLSRSA-PTLSGGEAQRIRLATQIGS--GLTGVLYVLDEPSIGLHPRDNDRLI-ETLKRLRDLGNTVL 193 (226)
T ss_pred HHHHHHCCCCcccccCcc-CcCCHHHHHHHHHHHHHHh--CCCCCEEEEeCCccCCCHHHHHHHH-HHHHHHHhCCCEEE
Confidence 456777888642111111 23555443 899999998 87 5999999999 9999999999 88998877788888
Q ss_pred EEEecccccccchhHHHhhhH
Q 026486 135 AVYLLDSQFITDVTKFISGCM 155 (238)
Q Consensus 135 ~v~l~d~~~~~d~~~~~~~~l 155 (238)
++. |..... .+++.++
T Consensus 194 ~it----H~~~~~-~~~d~i~ 209 (226)
T cd03270 194 VVE----HDEDTI-RAADHVI 209 (226)
T ss_pred EEE----eCHHHH-HhCCEEE
Confidence 874 666543 3555443
No 369
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.70 E-value=1.3e-17 Score=165.82 Aligned_cols=154 Identities=19% Similarity=0.230 Sum_probs=105.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-------CCCCC---CC---CCChhhhhh-------HHHHH
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY---PV---AMDIRELIS-------LEDVM 63 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~---~~---~~~i~~~i~-------~~~~l 63 (238)
.++++||+||||||....|-.++.|++|.|.++|.|... .+++. .| +-||+|+|. .+|++
T Consensus 1018 TvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi 1097 (1228)
T KOG0055|consen 1018 TVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEII 1097 (1228)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHH
Confidence 589999999999999999999999999999999998754 22222 12 446888775 22333
Q ss_pred HHcCCC---------CCCchhhh---HHhhhhhH--HHHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 026486 64 EELGLG---------PNGGLIYC---MEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (238)
Q Consensus 64 ~~~~l~---------~~~~~~~~---~~~~~~~~--s~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (238)
+...+. |+|-.-.. --.+++|+ +.+||||+.. +|++|+|||.|+ ||..+.+.+- +.+++..
T Consensus 1098 ~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilR--nPkILLLDEATSALDseSErvVQ-eALd~a~- 1173 (1228)
T KOG0055|consen 1098 EAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILR--NPKILLLDEATSALDSESERVVQ-EALDRAM- 1173 (1228)
T ss_pred HHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHc--CCCeeeeeccchhhhhhhHHHHH-HHHHHhh-
Confidence 322211 11100000 01345554 4999999999 999999999998 9999988777 8888874
Q ss_pred CCCeEEEEEecccccccchhHHHhhhHHHHHHHHhhcCCeeeeecccccccch
Q 026486 129 RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNK 181 (238)
Q Consensus 129 ~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~~~p~~~vlsk~dll~~~ 181 (238)
.|+|.|+| +|.++.... ...|.|+.+.-..++.
T Consensus 1174 ~gRT~IvI----AHRLSTIqn----------------aD~I~Vi~~G~VvE~G 1206 (1228)
T KOG0055|consen 1174 EGRTTIVI----AHRLSTIQN----------------ADVIAVLKNGKVVEQG 1206 (1228)
T ss_pred cCCcEEEE----ecchhhhhc----------------CCEEEEEECCEEEecc
Confidence 56676666 476653322 2356666666666554
No 370
>PLN03130 ABC transporter C family member; Provisional
Probab=99.70 E-value=2.7e-17 Score=171.79 Aligned_cols=152 Identities=14% Similarity=0.171 Sum_probs=102.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCC-ceEEEeeecCCCCCCCCCCCCChhhhhh---------HHHHHHHcCCCC---
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVR-RTMHIVNLDPAAENFDYPVAMDIRELIS---------LEDVMEELGLGP--- 70 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~-G~i~i~~~d~~~~~~~~~~~~~i~~~i~---------~~~~l~~~~l~~--- 70 (238)
.++|+||+|||||||+++|.|.++|.+ |+|.+.+.---...-++-.+-||+|||. ++++++..++.+
T Consensus 645 ~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~LfngTIreNI~fg~~~d~e~y~~vl~a~~L~~di~ 724 (1622)
T PLN03130 645 LVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDVTALQHDLD 724 (1622)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcCeEEEEcCccccCCCCHHHHHhCCCcccHHHHHHHHHHhCcHHHHH
Confidence 589999999999999999999999999 8998654211111122333457888875 555666555431
Q ss_pred ---CCchhh---hHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEEeccc
Q 026486 71 ---NGGLIY---CMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDS 141 (238)
Q Consensus 71 ---~~~~~~---~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~tvi~v~l~d~ 141 (238)
.|.... .-..+++|++ ++||||+.. +|+++|||||++ ||..+.+.++.++++.+. +++|+|+|+
T Consensus 725 ~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~--~~~IlLLDEptSALD~~~~~~I~~~~l~~~l-~~kTvIlVT---- 797 (1622)
T PLN03130 725 LLPGGDLTEIGERGVNISGGQKQRVSMARAVYS--NSDVYIFDDPLSALDAHVGRQVFDKCIKDEL-RGKTRVLVT---- 797 (1622)
T ss_pred hCCCcccccccCCCCCCCHHHHHHHHHHHHHhC--CCCEEEECCCccccCHHHHHHHHHHHhhHHh-cCCEEEEEE----
Confidence 111100 0013556654 899999999 999999999999 999999888766776653 578888884
Q ss_pred ccccchhHHHhhhHHHHHHHHh
Q 026486 142 QFITDVTKFISGCMASLSAMVQ 163 (238)
Q Consensus 142 ~~~~d~~~~~~~~l~~~~~~~~ 163 (238)
|...- ...++.++....|.+.
T Consensus 798 H~l~~-l~~aD~Ii~L~~G~i~ 818 (1622)
T PLN03130 798 NQLHF-LSQVDRIILVHEGMIK 818 (1622)
T ss_pred CCHhH-HHhCCEEEEEeCCEEE
Confidence 65532 2334545444444443
No 371
>PLN03232 ABC transporter C family member; Provisional
Probab=99.68 E-value=5.9e-17 Score=168.64 Aligned_cols=157 Identities=13% Similarity=0.158 Sum_probs=102.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCC-CCCCCCCCCCChhhhhh---------HHHHHHHcCCC----
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-AENFDYPVAMDIRELIS---------LEDVMEELGLG---- 69 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~-~~~~~~~~~~~i~~~i~---------~~~~l~~~~l~---- 69 (238)
.++|+||+|||||||+++|.|.++|++|.+......++ ...-++-.+-||+||+. ++++++..++.
T Consensus 645 ~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~ 724 (1495)
T PLN03232 645 LVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTALQHDLD 724 (1495)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCccccccccHHHHhhcCCccCHHHHHHHHHHhCCHHHHH
Confidence 58999999999999999999999999886543211110 01112222457888875 55566655542
Q ss_pred --CCCchhh---hHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEEeccc
Q 026486 70 --PNGGLIY---CMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDS 141 (238)
Q Consensus 70 --~~~~~~~---~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~tvi~v~l~d~ 141 (238)
|.|.... .-..+++|++ ++||||+.. +|+++|||||++ ||..+.+.++.++++.+. +++|+|+|+
T Consensus 725 ~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~--~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l-~~kT~IlvT---- 797 (1495)
T PLN03232 725 LLPGRDLTEIGERGVNISGGQKQRVSMARAVYS--NSDIYIFDDPLSALDAHVAHQVFDSCMKDEL-KGKTRVLVT---- 797 (1495)
T ss_pred hCCCCCCceecCCCcccCHHHHHHHHHHHHHhc--CCCEEEEcCCccccCHHHHHHHHHHHhhhhh-cCCEEEEEE----
Confidence 1211100 0023556654 999999999 999999999999 999999888866666543 578888884
Q ss_pred ccccchhHHHhhhHHHHHHHHhhcCCe
Q 026486 142 QFITDVTKFISGCMASLSAMVQLELPH 168 (238)
Q Consensus 142 ~~~~d~~~~~~~~l~~~~~~~~~~~p~ 168 (238)
|.... ...++.+++...|.+....++
T Consensus 798 H~~~~-l~~aD~Ii~L~~G~i~~~Gt~ 823 (1495)
T PLN03232 798 NQLHF-LPLMDRIILVSEGMIKEEGTF 823 (1495)
T ss_pred CChhh-HHhCCEEEEEeCCEEEEecCH
Confidence 65542 234555555444444433333
No 372
>PTZ00243 ABC transporter; Provisional
Probab=99.68 E-value=4.6e-17 Score=169.69 Aligned_cols=146 Identities=19% Similarity=0.134 Sum_probs=93.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCC--CCCCCCCCCCChhhhhh---------HHHHHHHc------
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--AENFDYPVAMDIRELIS---------LEDVMEEL------ 66 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~--~~~~~~~~~~~i~~~i~---------~~~~l~~~------ 66 (238)
.++|+||||||||||+++|+|.++|++|+|.+.+. ++ .+. ++..+.++++++. +.++++..
T Consensus 688 ~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~~~-i~yv~Q~-~~l~~~Tv~enI~~~~~~~~~~~~~~~~~~~l~~~l 765 (1560)
T PTZ00243 688 LTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERS-IAYVPQQ-AWIMNATVRGNILFFDEEDAARLADAVRVSQLEADL 765 (1560)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCe-EEEEeCC-CccCCCcHHHHHHcCChhhHHHHHHHHHHhhhHHHH
Confidence 68999999999999999999999999999986421 10 011 1112346777664 22233322
Q ss_pred -----CCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEEe
Q 026486 67 -----GLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYL 138 (238)
Q Consensus 67 -----~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~tvi~v~l 138 (238)
|+....+.. ...+++|++ ++|||++.. +|+++|||||++ ||+.+.+.++..++.... .|+|+|+++
T Consensus 766 ~~l~~g~~t~i~~~--g~~LSGGQkqRvaLARAl~~--~p~illLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvT- 839 (1560)
T PTZ00243 766 AQLGGGLETEIGEK--GVNLSGGQKARVSLARAVYA--NRDVYLLDDPLSALDAHVGERVVEECFLGAL-AGKTRVLAT- 839 (1560)
T ss_pred HHhhccchHHhcCC--CCCCCHHHHHHHHHHHHHhc--CCCEEEEcCccccCCHHHHHHHHHHHHHHhh-CCCEEEEEe-
Confidence 221110000 123555554 999999999 999999999999 999999888855554332 478888874
Q ss_pred cccccccchhHHHhhhHHHHHHH
Q 026486 139 LDSQFITDVTKFISGCMASLSAM 161 (238)
Q Consensus 139 ~d~~~~~d~~~~~~~~l~~~~~~ 161 (238)
|..... .+++.++....+.
T Consensus 840 ---H~~~~~-~~ad~ii~l~~G~ 858 (1560)
T PTZ00243 840 ---HQVHVV-PRADYVVALGDGR 858 (1560)
T ss_pred ---CCHHHH-HhCCEEEEEECCE
Confidence 544332 2344444443333
No 373
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.66 E-value=2e-16 Score=135.88 Aligned_cols=133 Identities=17% Similarity=0.200 Sum_probs=85.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeec-------C-----CCC--CCCC-CCC------------------
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-------P-----AAE--NFDY-PVA------------------ 50 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d-------~-----~~~--~~~~-~~~------------------ 50 (238)
+++|+|||||||||++.+|++.+.+..|++...+.+ . ... .+.| .++
T Consensus 24 ~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~~ 103 (247)
T cd03275 24 FTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGSSSYR 103 (247)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCceEEE
Confidence 578999999999999999999987665655433211 0 000 0000 000
Q ss_pred CCh--hhhhhHHHHHHHcCCCCCCc--------------------hhhhHHhhhhhHH--HHHHHHHhc--cCCCCEEEE
Q 026486 51 MDI--RELISLEDVMEELGLGPNGG--------------------LIYCMEHLEDNLD--DWLAEELDN--YLDDDYLVF 104 (238)
Q Consensus 51 ~~i--~~~i~~~~~l~~~~l~~~~~--------------------~~~~~~~~~~~~s--~~la~~l~~--~~~p~~lil 104 (238)
++- ...-.++++++.+|+..... .......++++++ +.||++++. ..+|+++|+
T Consensus 104 ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~lll 183 (247)
T cd03275 104 INGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFFVL 183 (247)
T ss_pred ECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEEE
Confidence 000 00012678888888864311 0111233444433 888998875 014899999
Q ss_pred eCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEE
Q 026486 105 DCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVY 137 (238)
Q Consensus 105 DEPt~-LD~~~~~~~~~~ll~~l~~~~~tvi~v~ 137 (238)
|||++ ||+..+..+. +++++++++|.++++|+
T Consensus 184 DEPt~~LD~~~~~~l~-~~i~~~~~~g~~vi~is 216 (247)
T cd03275 184 DEVDAALDNTNVGKVA-SYIREQAGPNFQFIVIS 216 (247)
T ss_pred ecccccCCHHHHHHHH-HHHHHhccCCcEEEEEE
Confidence 99999 9999999998 88999876688888884
No 374
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.66 E-value=3.2e-16 Score=126.45 Aligned_cols=160 Identities=16% Similarity=0.209 Sum_probs=107.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-------CCCCC-------CCCCChhhhhh-----------
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-------PVAMDIRELIS----------- 58 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-------~~~~~i~~~i~----------- 58 (238)
++=+|||||||||||+..++|+. |-+|+|.+.|.+... +..+| +..+.++.+++
T Consensus 27 ~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~YL~L~qP~~~~a~~ 105 (248)
T COG4138 27 ILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHYLTLHQPDKTRTEL 105 (248)
T ss_pred EEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhhhhhcCchHHHHHH
Confidence 56689999999999999999997 568999999988632 11111 01122333332
Q ss_pred HHHHHHHcCCCCCCchhhhHHhhhhh--HHHHHHHHHhcc-----CCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCC
Q 026486 59 LEDVMEELGLGPNGGLIYCMEHLEDN--LDDWLAEELDNY-----LDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN 130 (238)
Q Consensus 59 ~~~~l~~~~l~~~~~~~~~~~~~~~~--~s~~la~~l~~~-----~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~ 130 (238)
++++...++++...+.. .+.++++ +++.+|...... ...+++++|||.+ ||...+..+- +++.++.+.|
T Consensus 106 i~~i~~~L~l~DKL~Rs--~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLd-rll~~~c~~G 182 (248)
T COG4138 106 LNDVAGALALDDKLGRS--TNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALD-RLLSALCQQG 182 (248)
T ss_pred HHHHHhhhcccchhhhh--hhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHH-HHHHHHHhCC
Confidence 67788888888764332 3344443 225566554433 1336999999999 9998887777 9999999999
Q ss_pred CeEEEEEecccccccchhHHHhhhHHHHHHHHhhcCCeeee
Q 026486 131 FNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNI 171 (238)
Q Consensus 131 ~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~~~p~~~v 171 (238)
.+||+. +|.+...-.-.+.+.+...+.+......-+|
T Consensus 183 ~~vims----~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eV 219 (248)
T COG4138 183 LAIVMS----SHDLNHTLRHAHRAWLLKRGKLLASGRREEV 219 (248)
T ss_pred cEEEEe----ccchhhHHHHHHHHHHHhcCeEEeecchhhh
Confidence 999766 5888766666666666555554433333333
No 375
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=3.8e-16 Score=143.02 Aligned_cols=131 Identities=20% Similarity=0.224 Sum_probs=81.9
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCcCCCceEEEe-------eecCCCCCCCCCCCCChhhhh-------------hHH-HHH
Q 026486 5 QLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV-------NLDPAAENFDYPVAMDIRELI-------------SLE-DVM 63 (238)
Q Consensus 5 v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~-------~~d~~~~~~~~~~~~~i~~~i-------------~~~-~~l 63 (238)
+|++||||+|||||+|+|+. |.|... |-+.....-....+....+.+ .+. +++
T Consensus 109 YGLvGrNG~GKsTLLRaia~------~~v~~f~veqE~~g~~t~~~~~~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L 182 (582)
T KOG0062|consen 109 YGLVGRNGIGKSTLLRAIAN------GQVSGFHVEQEVRGDDTEALQSVLESDTERLDFLAEEKELLAGLTLEEIYDKIL 182 (582)
T ss_pred cceeCCCCCcHHHHHHHHHh------cCcCccCchhheeccchHHHhhhhhccHHHHHHHHhhhhhhccchHHHHHHHHH
Confidence 58999999999999999998 322221 111100000000111111111 122 267
Q ss_pred HHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEEecc
Q 026486 64 EELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLD 140 (238)
Q Consensus 64 ~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~tvi~v~l~d 140 (238)
..+|+.+.... .+...++++.+ ++||||+.. +||+|+|||||+ ||..+...+- + .|+..+.|+++|+ ||
T Consensus 183 ~glGFt~emq~-~pt~slSGGWrMrlaLARAlf~--~pDlLLLDEPTNhLDv~av~WLe-~---yL~t~~~T~liVS-HD 254 (582)
T KOG0062|consen 183 AGLGFTPEMQL-QPTKSLSGGWRMRLALARALFA--KPDLLLLDEPTNHLDVVAVAWLE-N---YLQTWKITSLIVS-HD 254 (582)
T ss_pred HhCCCCHHHHh-ccccccCcchhhHHHHHHHHhc--CCCEEeecCCcccchhHHHHHHH-H---HHhhCCceEEEEe-cc
Confidence 77888765322 23356777754 999999999 999999999999 9998775444 4 3444567887774 78
Q ss_pred cccccchhH
Q 026486 141 SQFITDVTK 149 (238)
Q Consensus 141 ~~~~~d~~~ 149 (238)
+.++..+..
T Consensus 255 r~FLn~V~t 263 (582)
T KOG0062|consen 255 RNFLNTVCT 263 (582)
T ss_pred HHHHHHHHH
Confidence 777765443
No 376
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.64 E-value=2.9e-16 Score=131.98 Aligned_cols=63 Identities=13% Similarity=-0.024 Sum_probs=49.0
Q ss_pred HHHHHHHhcc--------CCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccchhHHHhhh
Q 026486 87 DWLAEELDNY--------LDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGC 154 (238)
Q Consensus 87 ~~la~~l~~~--------~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~ 154 (238)
+++|++++.. .+|+++++|||++ +|+.++..+. ++++++++++.+++++ +|.......+++.+
T Consensus 132 ~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~-~~l~~~~~~~~tii~i----tH~~~~~~~~~~~i 203 (213)
T cd03279 132 ASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVA-TALELIRTENRMVGVI----SHVEELKERIPQRL 203 (213)
T ss_pred HHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHhCCCEEEEE----ECchHHHHhhCcEE
Confidence 8889999741 1578999999999 9999999998 8889987668888877 46665555555433
No 377
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.64 E-value=2.7e-15 Score=125.53 Aligned_cols=123 Identities=16% Similarity=0.122 Sum_probs=75.6
Q ss_pred eEEEEcCCCCcHHHHHHHHH----hCCcCCCceEEEeee----cCCCCCCCC-CC-----------CCChhhhhh---HH
Q 026486 4 AQLVIGPAGSGKSTYCSSLY----RHCETVRRTMHIVNL----DPAAENFDY-PV-----------AMDIRELIS---LE 60 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~----g~l~~~~G~i~i~~~----d~~~~~~~~-~~-----------~~~i~~~i~---~~ 60 (238)
+++|+||||||||||+++|. |...+..|.+..+.. ......+.+ ++ .+++.+++. -.
T Consensus 24 ~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~~~~~~~~~~~ 103 (204)
T cd03240 24 LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAILENVIFCHQG 103 (204)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhHhhceeeechH
Confidence 68999999999999999995 888887775541110 110001111 11 112333221 01
Q ss_pred HHHHHcCCCCCCchhhhHHhhhhhHH--------HHHHHHHhccCCCCEEEEeCCCc-ccHHhHH-HHHHHHHHHHHhC-
Q 026486 61 DVMEELGLGPNGGLIYCMEHLEDNLD--------DWLAEELDNYLDDDYLVFDCPGQ-IELFTHV-PVLRNFVDHLKSR- 129 (238)
Q Consensus 61 ~~l~~~~l~~~~~~~~~~~~~~~~~s--------~~la~~l~~~~~p~~lilDEPt~-LD~~~~~-~~~~~ll~~l~~~- 129 (238)
++-+.+.-. ...++.++. +++++++.. +|+++++|||++ ||+..+. .+. +++++++++
T Consensus 104 ~~~~~~~~~--------~~~LS~G~~~~~~la~rlala~al~~--~p~illlDEP~~~LD~~~~~~~l~-~~l~~~~~~~ 172 (204)
T cd03240 104 ESNWPLLDM--------RGRCSGGEKVLASLIIRLALAETFGS--NCGILALDEPTTNLDEENIEESLA-EIIEERKSQK 172 (204)
T ss_pred HHHHHHhcC--------ccccCccHHHHHHHHHHHHHHHHhcc--CCCEEEEcCCccccCHHHHHHHHH-HHHHHHHhcc
Confidence 111111000 012333322 467888888 999999999999 9999999 888 889988765
Q ss_pred CCeEEEEE
Q 026486 130 NFNVCAVY 137 (238)
Q Consensus 130 ~~tvi~v~ 137 (238)
+.++++++
T Consensus 173 ~~~iiiit 180 (204)
T cd03240 173 NFQLIVIT 180 (204)
T ss_pred CCEEEEEE
Confidence 77887773
No 378
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.64 E-value=5e-16 Score=138.98 Aligned_cols=155 Identities=17% Similarity=0.220 Sum_probs=114.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcC-----CCceEEEeeecCCC-----------CCCCC---------CCCCChhhhh
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA-----------ENFDY---------PVAMDIRELI 57 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~-----~~G~i~i~~~d~~~-----------~~~~~---------~~~~~i~~~i 57 (238)
-.++++|.+|||||-..+.++++++. -+|+|.++|.|.-. ..+.. .|-.+|...+
T Consensus 37 EtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi 116 (534)
T COG4172 37 ETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQL 116 (534)
T ss_pred CEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEecccccccCcHhHHHHHH
Confidence 36899999999999999999999975 36899999988622 12221 2233444333
Q ss_pred h-----------------HHHHHHHcCCCCCCchh--hhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhH
Q 026486 58 S-----------------LEDVMEELGLGPNGGLI--YCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTH 115 (238)
Q Consensus 58 ~-----------------~~~~l~~~~l~~~~~~~--~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~ 115 (238)
. +.++++.+|+....... |+ +.++++++ +.||.|++. +|++||.||||. ||...+
T Consensus 117 ~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yP-HeLSGGqRQRVMIAMALan--~P~lLIADEPTTALDVtvQ 193 (534)
T COG4172 117 AEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYP-HELSGGQRQRVMIAMALAN--EPDLLIADEPTTALDVTVQ 193 (534)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCC-cccCcchhhHHHHHHHHcC--CCCeEeecCCcchhhhhhH
Confidence 2 67788899997543332 22 34555544 899999999 999999999998 999999
Q ss_pred HHHHHHHHHHHHh-CCCeEEEEEecccccccchhHHHhhhHHHHHHHHhhc
Q 026486 116 VPVLRNFVDHLKS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLE 165 (238)
Q Consensus 116 ~~~~~~ll~~l~~-~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~~ 165 (238)
.+++ +++++|++ .|+.+++++ |.+.=+.+|.+++.++..|.+.-.
T Consensus 194 aQIL-~Ll~~Lq~~~gMa~lfIT----HDL~iVr~~ADrV~VM~~G~ivE~ 239 (534)
T COG4172 194 AQIL-DLLKELQAELGMAILFIT----HDLGIVRKFADRVYVMQHGEIVET 239 (534)
T ss_pred HHHH-HHHHHHHHHhCcEEEEEe----ccHHHHHHhhhhEEEEeccEEeec
Confidence 9999 99999986 599999884 888777777776555444444433
No 379
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.62 E-value=1.2e-15 Score=132.04 Aligned_cols=79 Identities=18% Similarity=0.220 Sum_probs=59.4
Q ss_pred HHHHHHHcCCCCC-CchhhhHHhhhhhH--HHHHHHHHhccCC---CCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCC
Q 026486 59 LEDVMEELGLGPN-GGLIYCMEHLEDNL--DDWLAEELDNYLD---DDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNF 131 (238)
Q Consensus 59 ~~~~l~~~~l~~~-~~~~~~~~~~~~~~--s~~la~~l~~~~~---p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~ 131 (238)
..++++.+||+.. .+.. ...++++. ++.||+++.. + |+++|+||||+ ||+..+..+. ++++++.++|.
T Consensus 149 ~~~~L~~vgL~~l~l~~~--~~~LSgGe~QRl~LAraL~~--~~~~p~lllLDEPtsgLD~~~~~~l~-~~L~~l~~~g~ 223 (261)
T cd03271 149 KLQTLCDVGLGYIKLGQP--ATTLSGGEAQRIKLAKELSK--RSTGKTLYILDEPTTGLHFHDVKKLL-EVLQRLVDKGN 223 (261)
T ss_pred HHHHHHHcCCchhhhcCc--cccCCHHHHHHHHHHHHHhc--CCCCCcEEEEECCCCCCCHHHHHHHH-HHHHHHHhCCC
Confidence 4456778888752 2221 23455554 3899999998 6 79999999999 9999999999 89999987788
Q ss_pred eEEEEEecccccccc
Q 026486 132 NVCAVYLLDSQFITD 146 (238)
Q Consensus 132 tvi~v~l~d~~~~~d 146 (238)
+++++ +|....
T Consensus 224 tvIii----tH~~~~ 234 (261)
T cd03271 224 TVVVI----EHNLDV 234 (261)
T ss_pred EEEEE----eCCHHH
Confidence 98887 366643
No 380
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.61 E-value=1.4e-15 Score=140.08 Aligned_cols=142 Identities=18% Similarity=0.207 Sum_probs=96.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeec-CC--C----CCCCCCC---------CCChhhhhhHHHHHHHcC
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-PA--A----ENFDYPV---------AMDIRELISLEDVMEELG 67 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d-~~--~----~~~~~~~---------~~~i~~~i~~~~~l~~~~ 67 (238)
-++++||||+|||||+|+++|.+.|..|.|.-.... .+ . +..+|.. ..+.++.=.++.++.++|
T Consensus 418 rvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfg 497 (614)
T KOG0927|consen 418 RVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFG 497 (614)
T ss_pred ceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhC
Confidence 479999999999999999999999999998754211 11 1 1111100 001222223777899999
Q ss_pred CCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEEecccccc
Q 026486 68 LGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFI 144 (238)
Q Consensus 68 l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~tvi~v~l~d~~~~ 144 (238)
|.... +...+..++.+++ +.+|+.+.. .|.+|+|||||+ ||..+...+. +.+.. ...++|+| ||.+
T Consensus 498 Ltgd~-q~~p~~~LS~Gqr~rVlFa~l~~k--qP~lLlLDEPtnhLDi~tid~la-eaiNe---~~Ggvv~v----SHDf 566 (614)
T KOG0927|consen 498 LTGDA-QVVPMSQLSDGQRRRVLFARLAVK--QPHLLLLDEPTNHLDIETIDALA-EAINE---FPGGVVLV----SHDF 566 (614)
T ss_pred CCccc-cccchhhcccccchhHHHHHHHhc--CCcEEEecCCCcCCCchhHHHHH-HHHhc---cCCceeee----echh
Confidence 98653 3444566777765 888888888 999999999999 9999886655 54444 44467777 4666
Q ss_pred cchhHHHhhhHH
Q 026486 145 TDVTKFISGCMA 156 (238)
Q Consensus 145 ~d~~~~~~~~l~ 156 (238)
.-+..+...+..
T Consensus 567 rlI~qVaeEi~~ 578 (614)
T KOG0927|consen 567 RLISQVAEEIWV 578 (614)
T ss_pred hHHHHHHHHhHh
Confidence 544555544443
No 381
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.60 E-value=3.9e-15 Score=135.96 Aligned_cols=130 Identities=16% Similarity=0.223 Sum_probs=87.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-------CCCCC-CCCC-----Chhhhhh----------H
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PVAM-----DIRELIS----------L 59 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~~~-----~i~~~i~----------~ 59 (238)
-.++++||+|+||||++|++-.+...++|.|.++|+|+.+ ..++. ||+. +|..+|. +
T Consensus 565 ktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~Asneev 644 (790)
T KOG0056|consen 565 KTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEV 644 (790)
T ss_pred cEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCCCCChHHH
Confidence 3689999999999999999999999999999999999854 22333 3321 2222222 2
Q ss_pred HHHHHHcCCC------CCC--chh--hhHHhhhhh--HHHHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 026486 60 EDVMEELGLG------PNG--GLI--YCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (238)
Q Consensus 60 ~~~l~~~~l~------~~~--~~~--~~~~~~~~~--~s~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l 126 (238)
.++.+..++- |.| .++ ..+ +++++ +++++||++.+ .|.++++||.|+ ||..+.+.+- ..+.++
T Consensus 645 yaAAkAA~IHdrIl~fPegY~t~VGERGL-kLSGGEKQRVAiARtiLK--~P~iIlLDEATSALDT~tER~IQ-aaL~rl 720 (790)
T KOG0056|consen 645 YAAAKAAQIHDRILQFPEGYNTRVGERGL-KLSGGEKQRVAIARTILK--APSIILLDEATSALDTNTERAIQ-AALARL 720 (790)
T ss_pred HHHHHHhhHHHHHhcCchhhhhhhhhccc-ccCCcchhhHHHHHHHhc--CCcEEEEcchhhhcCCccHHHHH-HHHHHH
Confidence 2222111110 110 000 001 23332 45999999999 999999999998 9999999988 888888
Q ss_pred HhCCCeEEEE
Q 026486 127 KSRNFNVCAV 136 (238)
Q Consensus 127 ~~~~~tvi~v 136 (238)
.+...++++.
T Consensus 721 ca~RTtIVvA 730 (790)
T KOG0056|consen 721 CANRTTIVVA 730 (790)
T ss_pred hcCCceEEEe
Confidence 7654455444
No 382
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.59 E-value=2.1e-15 Score=152.84 Aligned_cols=138 Identities=20% Similarity=0.244 Sum_probs=94.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-------CCCCC-CCC-----CChhhhhh---------HHH
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PVA-----MDIRELIS---------LED 61 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~~-----~~i~~~i~---------~~~ 61 (238)
-+||+|+.|||||||.++|-.+..|.+|+|.++|.|+.. ..+.. ||+ =|+|.|++ +-+
T Consensus 1168 KVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf~e~sD~~IW~ 1247 (1381)
T KOG0054|consen 1168 KVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPFDEYSDDEIWE 1247 (1381)
T ss_pred eEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccccccCcccccCHHHHHH
Confidence 479999999999999999999999999999999999854 22222 332 24555554 445
Q ss_pred HHHHcCCCCC-----CchhhhH----HhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC
Q 026486 62 VMEELGLGPN-----GGLIYCM----EHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR 129 (238)
Q Consensus 62 ~l~~~~l~~~-----~~~~~~~----~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~ 129 (238)
++++.++.+. +++.... +.++-|++ +.||||+.. +++++++||+|+ +|+.+-.-+- +.+++-= .
T Consensus 1248 ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr--~skILvLDEATAsVD~~TD~lIQ-~tIR~~F-~ 1323 (1381)
T KOG0054|consen 1248 ALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLR--KSKILVLDEATASVDPETDALIQ-KTIREEF-K 1323 (1381)
T ss_pred HHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhc--cCCEEEEecccccCChHHHHHHH-HHHHHHh-c
Confidence 5555544321 0010000 22333333 899999999 999999999998 9999986665 5555421 4
Q ss_pred CCeEEEEEecccccccchhH
Q 026486 130 NFNVCAVYLLDSQFITDVTK 149 (238)
Q Consensus 130 ~~tvi~v~l~d~~~~~d~~~ 149 (238)
+.||+.| +|.+...-+
T Consensus 1324 dcTVltI----AHRl~TVmd 1339 (1381)
T KOG0054|consen 1324 DCTVLTI----AHRLNTVMD 1339 (1381)
T ss_pred CCeEEEE----eeccchhhh
Confidence 6888877 587764433
No 383
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=9.4e-16 Score=137.72 Aligned_cols=133 Identities=17% Similarity=0.229 Sum_probs=89.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-------CCCCC-CCCC-----Chhhhhh----------HH
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PVAM-----DIRELIS----------LE 60 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~~~-----~i~~~i~----------~~ 60 (238)
.++++||+|+||||+++.+..++.+++|.|.++|+|+.. ..++. ||+. ++..++. +.
T Consensus 291 tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~ 370 (497)
T COG5265 291 TVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVG 370 (497)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHH
Confidence 589999999999999999999999999999999998743 12222 2221 1222221 22
Q ss_pred HHHHHcCC------CCCC-----chhhhHHhhh--hhHHHHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 026486 61 DVMEELGL------GPNG-----GLIYCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (238)
Q Consensus 61 ~~l~~~~l------~~~~-----~~~~~~~~~~--~~~s~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l 126 (238)
...+...+ .|.| +.+.- +++ +.+++++||++.+ +|++++|||.|+ ||..+.+++. .-+++.
T Consensus 371 aaa~~aqi~~fi~~lP~gy~t~Vgergl--klSggekqrvaiar~ilk--~p~il~~deatsaldt~te~~iq-~~l~~~ 445 (497)
T COG5265 371 AAAEAAQIHDFIQSLPEGYDTGVGERGL--KLSGGEKQRVAIARTILK--NPPILILDEATSALDTHTEQAIQ-AALREV 445 (497)
T ss_pred HHHHHhhhhHHHHhCchhhhcccchhee--eccCchHHHHHHHHHHhc--CCCEEEEehhhhHhhhhHHHHHH-HHHHHH
Confidence 22222222 2221 11100 122 2355999999999 999999999999 9999998888 777777
Q ss_pred HhCCCeEEEEEecccccccc
Q 026486 127 KSRNFNVCAVYLLDSQFITD 146 (238)
Q Consensus 127 ~~~~~tvi~v~l~d~~~~~d 146 (238)
. .|.|.+++ +|.++.
T Consensus 446 ~-~~rttlvi----ahrlst 460 (497)
T COG5265 446 S-AGRTTLVI----AHRLST 460 (497)
T ss_pred h-CCCeEEEE----eehhhh
Confidence 5 45565555 366543
No 384
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.58 E-value=6.4e-15 Score=133.53 Aligned_cols=131 Identities=15% Similarity=0.198 Sum_probs=86.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCC--CCCCCCCCCCChhhhhh------------HHHHHHHcCC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--AENFDYPVAMDIRELIS------------LEDVMEELGL 68 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~--~~~~~~~~~~~i~~~i~------------~~~~l~~~~l 68 (238)
-+++++||||-|||||++.|+|.++|++|. ..+..++ .+.+.-..+.++++.+. ..|+++-++|
T Consensus 368 EvigilGpNgiGKTTFvk~LAG~ikPdeg~--~~~~~vSyKPQyI~~~~~gtV~~~l~~~~~~~~~~s~~~~ei~~pl~l 445 (591)
T COG1245 368 EVIGILGPNGIGKTTFVKLLAGVIKPDEGS--EEDLKVSYKPQYISPDYDGTVEDLLRSAIRSAFGSSYFKTEIVKPLNL 445 (591)
T ss_pred eEEEEECCCCcchHHHHHHHhccccCCCCC--CccceEeecceeecCCCCCcHHHHHHHhhhhhcccchhHHhhcCccch
Confidence 478999999999999999999999999997 1111110 11111112335665543 2344444444
Q ss_pred CCCCchhhhHHhhhhh--HHHHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CCCeEEEEEeccc
Q 026486 69 GPNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNVCAVYLLDS 141 (238)
Q Consensus 69 ~~~~~~~~~~~~~~~~--~s~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~~tvi~v~l~d~ 141 (238)
++...+. ...++++ +++++|.+|.. ++++.++|||.+ ||...+-.+. +.++++.. .+++.++| -||-
T Consensus 446 ~~i~e~~--v~~LSGGELQRvaIaa~L~r--eADlYllDEPSA~LDvEqR~~va-kvIRR~~e~~~kta~vV-dHDi 516 (591)
T COG1245 446 EDLLERP--VDELSGGELQRVAIAAALSR--EADLYLLDEPSAYLDVEQRIIVA-KVIRRFIENNEKTALVV-DHDI 516 (591)
T ss_pred HHHHhcc--cccCCchhHHHHHHHHHhcc--ccCEEEecCchhhccHHHHHHHH-HHHHHHHhhcCceEEEE-ecce
Confidence 4321111 1223333 34899999999 999999999999 9999988887 88999875 45666555 3443
No 385
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.57 E-value=1.5e-15 Score=151.42 Aligned_cols=161 Identities=17% Similarity=0.202 Sum_probs=110.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCc--CCCceEEEeeecCCC----CCCCC-C------CCCChhhhhh-----------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCE--TVRRTMHIVNLDPAA----ENFDY-P------VAMDIRELIS----------- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~--~~~G~i~i~~~d~~~----~~~~~-~------~~~~i~~~i~----------- 58 (238)
..+|++|+||||||||+++|+|=.. ..+|+|.++|.+..+ +..+| . +..||||.+.
T Consensus 818 ~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v 897 (1391)
T KOG0065|consen 818 VLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVRESLRFSAALRLPKEV 897 (1391)
T ss_pred ceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccchHHHHHHHHHHcCCCcC
Confidence 3579999999999999999999532 246899999987542 34555 1 2457887764
Q ss_pred --------HHHHHHHcCCCCCCchhhhH--HhhhhhHH--HHHHHHHhccCCC-CEEEEeCCCc-ccHHhHHHHHHHHHH
Q 026486 59 --------LEDVMEELGLGPNGGLIYCM--EHLEDNLD--DWLAEELDNYLDD-DYLVFDCPGQ-IELFTHVPVLRNFVD 124 (238)
Q Consensus 59 --------~~~~l~~~~l~~~~~~~~~~--~~~~~~~s--~~la~~l~~~~~p-~~lilDEPt~-LD~~~~~~~~~~ll~ 124 (238)
++++|+.++|++...-+... .-++..++ +.||-.|+. +| .+|+|||||+ ||..+.-.++ ++++
T Consensus 898 ~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA--~P~~ilFLDEPTSGLDsqaA~~i~-~~lr 974 (1391)
T KOG0065|consen 898 SDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVA--NPSSILFLDEPTSGLDSQAAAIVM-RFLR 974 (1391)
T ss_pred CHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEec--CCceeEEecCCCCCccHHHHHHHH-HHHH
Confidence 88999999998643222111 00111222 566767777 99 8999999999 9999999999 9999
Q ss_pred HHHhCCCeEEEEEecccccccchhHHHhhhHHHHHHHHhhcCCe
Q 026486 125 HLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPH 168 (238)
Q Consensus 125 ~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~~~p~ 168 (238)
++.+.|.+|++. +|-.. ..--+.|-..+++-.+|+....+|.
T Consensus 975 kla~tGqtIlCT-IHQPS-~~ife~FD~LLLLkrGGqtVY~G~l 1016 (1391)
T KOG0065|consen 975 KLADTGQTILCT-IHQPS-IDIFEAFDELLLLKRGGQTVYFGPL 1016 (1391)
T ss_pred HHHhcCCeEEEE-ecCCc-HHHHHHHhHHHHHhcCCeEEEecCc
Confidence 999899988654 33211 1112345555555566766655554
No 386
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.56 E-value=2.1e-15 Score=126.89 Aligned_cols=56 Identities=14% Similarity=0.087 Sum_probs=42.0
Q ss_pred hhhhhHH--HHHHHHHhcc--CCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEE
Q 026486 80 HLEDNLD--DWLAEELDNY--LDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVY 137 (238)
Q Consensus 80 ~~~~~~s--~~la~~l~~~--~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~tvi~v~ 137 (238)
.++.+++ +.+|++++.. .+|+++++|||++ +|+.++..+. +.++++++ +.+++++.
T Consensus 127 ~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~-~~l~~~~~-~~~~iivs 187 (212)
T cd03274 127 NLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVA-NYIKERTK-NAQFIVIS 187 (212)
T ss_pred hcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHH-HHHHHHcC-CCEEEEEE
Confidence 3444433 8889888631 1589999999999 9999999998 88888854 45666663
No 387
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.55 E-value=1.7e-14 Score=133.64 Aligned_cols=155 Identities=15% Similarity=0.192 Sum_probs=117.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC--------CCCCC----------CCCCChhhhhh------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY----------PVAMDIRELIS------ 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~--------~~~~~----------~~~~~i~~~i~------ 58 (238)
-+++|.|--|||+|=++++|.|+.++.+|+|.++|.+... ..++| ....+|.+|++
T Consensus 286 EIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~ 365 (500)
T COG1129 286 EILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRR 365 (500)
T ss_pred cEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhh
Confidence 4789999999999999999999999999999999986532 12333 22445666654
Q ss_pred ---------------HHHHHHHcCCCCCCchhhhHHhhhh-hH-HHHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHH
Q 026486 59 ---------------LEDVMEELGLGPNGGLIYCMEHLED-NL-DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (238)
Q Consensus 59 ---------------~~~~l~~~~l~~~~~~~~~~~~~~~-~~-s~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~ 120 (238)
++++.+.+++........ ...+++ |+ ++.||+.|.. +|++|||||||. +|..++.+++
T Consensus 366 ~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~-v~~LSGGNQQKVvlarwL~~--~p~vLilDEPTRGIDVGAK~eIy- 441 (500)
T COG1129 366 FSRRGLIDRRKERALAERYIRRLRIKTPSPEQP-IGTLSGGNQQKVVLARWLAT--DPKVLILDEPTRGIDVGAKAEIY- 441 (500)
T ss_pred hccccccChHHHHHHHHHHHHhcCcccCCccch-hhcCCchhhhhHHHHHHHhc--CCCEEEECCCCcCcccchHHHHH-
Confidence 455555666643322211 223443 33 3999999999 999999999998 9999999999
Q ss_pred HHHHHHHhCCCeEEEEEecccccccchhHHHhhhHHHHHHHHhhc
Q 026486 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLE 165 (238)
Q Consensus 121 ~ll~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~~ 165 (238)
+++++++++|++|+++ |..+.+....+++++++..+.+.-+
T Consensus 442 ~li~~lA~~G~ail~i----SSElpEll~~~DRIlVm~~Gri~~e 482 (500)
T COG1129 442 RLIRELAAEGKAILMI----SSELPELLGLSDRILVMREGRIVGE 482 (500)
T ss_pred HHHHHHHHCCCEEEEE----eCChHHHHhhCCEEEEEECCEEEEE
Confidence 9999999999999988 4778888888887776666655443
No 388
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.54 E-value=1.3e-14 Score=131.54 Aligned_cols=126 Identities=23% Similarity=0.274 Sum_probs=92.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC---------------------------CCCCC----CC--
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------------------------ENFDY----PV-- 49 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~---------------------------~~~~~----~~-- 49 (238)
.+++|+||||-||||-+|+|+|.+.|.=|+.. -+|.- ....| |.
T Consensus 101 ~V~GilG~NGiGKsTalkILaGel~PNLG~~~---~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~iPk~~ 177 (591)
T COG1245 101 KVVGILGPNGIGKSTALKILAGELKPNLGRYE---DPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIPKVV 177 (591)
T ss_pred cEEEEEcCCCccHHHHHHHHhCccccCCCCCC---CCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHHHHHh
Confidence 57999999999999999999999999876532 11210 11111 00
Q ss_pred CCChhhhhh-------HHHHHHHcCCCCCCchhhhHHhhhhh--HHHHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHH
Q 026486 50 AMDIRELIS-------LEDVMEELGLGPNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVL 119 (238)
Q Consensus 50 ~~~i~~~i~-------~~~~l~~~~l~~~~~~~~~~~~~~~~--~s~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~ 119 (238)
.-++++.+. .++++++++|..--... .+.++++ ++++||.++.. ++++.+||||++ ||...+-.+.
T Consensus 178 KG~v~elLk~~de~g~~devve~l~L~nvl~r~--v~~LSGGELQr~aIaa~l~r--dADvY~FDEpsSyLDi~qRl~~a 253 (591)
T COG1245 178 KGKVGELLKKVDERGKFDEVVERLGLENVLDRD--VSELSGGELQRVAIAAALLR--DADVYFFDEPSSYLDIRQRLNAA 253 (591)
T ss_pred cchHHHHHHhhhhcCcHHHHHHHhcchhhhhhh--hhhcCchHHHHHHHHHHHhc--cCCEEEEcCCcccccHHHHHHHH
Confidence 113444443 77889999987643222 3445544 34899999999 999999999999 9999999988
Q ss_pred HHHHHHHHhCCCeEEEE
Q 026486 120 RNFVDHLKSRNFNVCAV 136 (238)
Q Consensus 120 ~~ll~~l~~~~~tvi~v 136 (238)
+++++|.+.++.+++|
T Consensus 254 -r~Irel~~~~k~ViVV 269 (591)
T COG1245 254 -RVIRELAEDGKYVIVV 269 (591)
T ss_pred -HHHHHHhccCCeEEEE
Confidence 9999998778888887
No 389
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.53 E-value=3.2e-14 Score=118.63 Aligned_cols=115 Identities=15% Similarity=0.115 Sum_probs=67.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCCCCCCC-----CCCCChhhhhhHHHHHHHcCCCCCCchhhhH
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDY-----PVAMDIRELISLEDVMEELGLGPNGGLIYCM 78 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~-----~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~ 78 (238)
+++|+||||||||||+|.++|.... ...|.++.+....+ .+.++++|++.. ++...
T Consensus 27 ~~~ltGpNg~GKSTllr~i~~~~~l-----~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~-------~~s~~------- 87 (199)
T cd03283 27 GILITGSNMSGKSTFLRTIGVNVIL-----AQAGAPVCASSFELPPVKIFTSIRVSDDLRD-------GISYF------- 87 (199)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHH-----HHcCCEEecCccCcccceEEEeccchhcccc-------ccChH-------
Confidence 5789999999999999999986531 11222221111211 122333333211 22111
Q ss_pred HhhhhhHHHHHHHHHhccC--CCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEEeccccccc
Q 026486 79 EHLEDNLDDWLAEELDNYL--DDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFIT 145 (238)
Q Consensus 79 ~~~~~~~s~~la~~l~~~~--~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~tvi~v~l~d~~~~~ 145 (238)
.... ..+...+.... +|+++++|||++ +|+..+..+...+++.+.+.+.+++++ +|...
T Consensus 88 ---~~e~-~~~~~iL~~~~~~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~~~tiiiv----TH~~~ 149 (199)
T cd03283 88 ---YAEL-RRLKEIVEKAKKGEPVLFLLDEIFKGTNSRERQAASAAVLKFLKNKNTIGIIS----THDLE 149 (199)
T ss_pred ---HHHH-HHHHHHHHhccCCCCeEEEEecccCCCCHHHHHHHHHHHHHHHHHCCCEEEEE----cCcHH
Confidence 0111 11222222222 899999999998 999999877646788887677777777 46654
No 390
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.53 E-value=1.3e-13 Score=114.86 Aligned_cols=135 Identities=10% Similarity=0.074 Sum_probs=76.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCC-----ce----EEEeeecCCC-----CCCCCCC-CCChhhhhhHHHHHHHcCC
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVR-----RT----MHIVNLDPAA-----ENFDYPV-AMDIRELISLEDVMEELGL 68 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~-----G~----i~i~~~d~~~-----~~~~~~~-~~~i~~~i~~~~~l~~~~l 68 (238)
+.+|+|||||||||++.+|...+.... |. +.-.|.+.+. ++-...+ .....+.-.++++++.
T Consensus 23 l~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~--- 99 (198)
T cd03276 23 VNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDANPLCVLSQDMARSFLTS--- 99 (198)
T ss_pred eEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccCCcCCHHHHHHHHHHhcc---
Confidence 468999999999999999985432221 11 0000000000 0000111 0111111235666665
Q ss_pred CCCCchhhhHHhhhhhHH--HHHHHHH----hccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC--C-CeEEEEEe
Q 026486 69 GPNGGLIYCMEHLEDNLD--DWLAEEL----DNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR--N-FNVCAVYL 138 (238)
Q Consensus 69 ~~~~~~~~~~~~~~~~~s--~~la~~l----~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~--~-~tvi~v~l 138 (238)
.... ......++.+++ +++|+++ +. +|+++++|||++ +|+..+..+. ++++++.+. + .+++++
T Consensus 100 ~~~~--~~~~~~lS~G~k~r~~ia~al~~~~~~--~p~illlDEP~~glD~~~~~~~~-~~l~~~~~~~~~~~~iii~-- 172 (198)
T cd03276 100 NKAA--VRDVKTLSGGERSFSTVCLLLSLWEVM--ESPFRCLDEFDVFMDMVNRKIST-DLLVKEAKKQPGRQFIFIT-- 172 (198)
T ss_pred cccc--CCcccccChhHHHHHHHHHHHHHhccc--CCCEEEecCcccccCHHHHHHHH-HHHHHHHhcCCCcEEEEEE--
Confidence 2111 111234445443 7888888 46 999999999999 9999999999 888777543 3 345444
Q ss_pred cccccccchhHH
Q 026486 139 LDSQFITDVTKF 150 (238)
Q Consensus 139 ~d~~~~~d~~~~ 150 (238)
+|.+.+...+
T Consensus 173 --th~~~~i~~~ 182 (198)
T cd03276 173 --PQDISGLASS 182 (198)
T ss_pred --CCcccccccc
Confidence 4666655443
No 391
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.52 E-value=1e-14 Score=121.52 Aligned_cols=119 Identities=13% Similarity=0.193 Sum_probs=71.7
Q ss_pred eEEEEcCCCCcHHHHHHHHH--------hCCcCCCceEEEeeecCCCCCCCC-CCCCChhhhhhHHHHHHHcCCCCCCch
Q 026486 4 AQLVIGPAGSGKSTYCSSLY--------RHCETVRRTMHIVNLDPAAENFDY-PVAMDIRELISLEDVMEELGLGPNGGL 74 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~--------g~l~~~~G~i~i~~~d~~~~~~~~-~~~~~i~~~i~~~~~l~~~~l~~~~~~ 74 (238)
+++|+||||||||||++.+. |...|....+ .++| .+.++ .+...+.+.
T Consensus 30 ~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~----------~~~~~~~~~~---~lg~~~~l~---------- 86 (200)
T cd03280 30 VLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGS----------SLPVFENIFA---DIGDEQSIE---------- 86 (200)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccc----------cCcCccEEEE---ecCchhhhh----------
Confidence 58999999999999999998 4433322111 2333 22111 000111110
Q ss_pred hhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccchhHHH
Q 026486 75 IYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFI 151 (238)
Q Consensus 75 ~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~tvi~v~l~d~~~~~d~~~~~ 151 (238)
..+..++.+++ ..++++ +. +|+++++|||++ +|+..+..++..+++.+.+.+.+++++ +|. .+...++
T Consensus 87 -~~~s~fs~g~~~~~~i~~~-~~--~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~----tH~-~~l~~~~ 157 (200)
T cd03280 87 -QSLSTFSSHMKNIARILQH-AD--PDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIAT----THY-GELKAYA 157 (200)
T ss_pred -cCcchHHHHHHHHHHHHHh-CC--CCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEE----CCH-HHHHHHH
Confidence 00123444443 444444 35 999999999999 999999998756788887677777766 464 3344454
Q ss_pred hhh
Q 026486 152 SGC 154 (238)
Q Consensus 152 ~~~ 154 (238)
+..
T Consensus 158 d~~ 160 (200)
T cd03280 158 YKR 160 (200)
T ss_pred hcC
Confidence 443
No 392
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.50 E-value=4.4e-14 Score=143.31 Aligned_cols=160 Identities=17% Similarity=0.161 Sum_probs=113.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCCCCCCCCCCCChhhhhh---------HHHHHHHcCCCC----
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELIS---------LEDVMEELGLGP---- 70 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~~~~~~i~~~i~---------~~~~l~~~~l~~---- 70 (238)
.++|+||-|||||+|+.+|.|.++..+|++.+.|.-......++-++-|+||||- ++++++...|.+
T Consensus 549 lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gsiaYv~Q~pWI~ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~ 628 (1381)
T KOG0054|consen 549 LVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYVPQQPWIQNGTVRENILFGSPYDEERYDKVIKACALKKDLEI 628 (1381)
T ss_pred EEEEECCCCCCHHHHHHHHhcCcccccceEEEcCeEEEeccccHhhCCcHHHhhhcCccccHHHHHHHHHHccCHhHHhh
Confidence 5899999999999999999999999999999998622222334445778999985 777888776653
Q ss_pred --CCchhhhH---HhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEEecccc
Q 026486 71 --NGGLIYCM---EHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQ 142 (238)
Q Consensus 71 --~~~~~~~~---~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~tvi~v~l~d~~ 142 (238)
.|.+..-- -.+++|++ +.||||+-. ++++.+||.|.+ +|...-+.++++.++.+ -+++|+|+|+ |
T Consensus 629 Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~--~adIYLLDDplSAVDahvg~~if~~ci~~~-L~~KT~ILVT----H 701 (1381)
T KOG0054|consen 629 LPFGDLTEIGERGINLSGGQKQRISLARAVYQ--DADIYLLDDPLSAVDAHVGKHIFEECIRGL-LRGKTVILVT----H 701 (1381)
T ss_pred cCCCCcceecCCccCCcHhHHHHHHHHHHHhc--cCCEEEEcCcchhhhHhhhHHHHHHHHHhh-hcCCEEEEEe----C
Confidence 22111000 12455554 899999999 999999999998 99999999998888555 3578998884 5
Q ss_pred cccchhHHHhhhHHHHHHHHhhcCCeeee
Q 026486 143 FITDVTKFISGCMASLSAMVQLELPHVNI 171 (238)
Q Consensus 143 ~~~d~~~~~~~~l~~~~~~~~~~~p~~~v 171 (238)
.+. .-.-++.++++..|++.-.+++-+.
T Consensus 702 ql~-~L~~ad~Iivl~~G~I~~~Gty~el 729 (1381)
T KOG0054|consen 702 QLQ-FLPHADQIIVLKDGKIVESGTYEEL 729 (1381)
T ss_pred chh-hhhhCCEEEEecCCeEecccCHHHH
Confidence 332 2223445555555655554444333
No 393
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.47 E-value=2e-13 Score=128.85 Aligned_cols=128 Identities=16% Similarity=0.148 Sum_probs=89.2
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeec-C-CCCCCCCCCCCChhhhhh------------HHHHHHHcCCCC
Q 026486 5 QLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-P-AAENFDYPVAMDIRELIS------------LEDVMEELGLGP 70 (238)
Q Consensus 5 v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d-~-~~~~~~~~~~~~i~~~i~------------~~~~l~~~~l~~ 70 (238)
+.|.||||||||||+|+|+|+-+--+|+|..-.-. . --...||.|.-+.||.+. +.+++.++||++
T Consensus 422 llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~ 501 (604)
T COG4178 422 LLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGD 501 (604)
T ss_pred EEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCccHHHHHhCCCCCCCCChHHHHHHHHHcCcHH
Confidence 67999999999999999999999989998765111 0 001234433334554442 778899999986
Q ss_pred CCchhh---hH-Hhhhh--hHHHHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 026486 71 NGGLIY---CM-EHLED--NLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (238)
Q Consensus 71 ~~~~~~---~~-~~~~~--~~s~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~tvi~v 136 (238)
...... .. ..++. ++++++||.+.. +|+++++||.|+ ||..+...++ +++++-- .+.++|.|
T Consensus 502 L~~rl~~~~~W~~vLS~GEqQRlafARilL~--kP~~v~LDEATsALDe~~e~~l~-q~l~~~l-p~~tvISV 570 (604)
T COG4178 502 LAERLDEEDRWDRVLSGGEQQRLAFARLLLH--KPKWVFLDEATSALDEETEDRLY-QLLKEEL-PDATVISV 570 (604)
T ss_pred HHHHHhccCcHhhhcChhHHHHHHHHHHHHc--CCCEEEEecchhccChHHHHHHH-HHHHhhC-CCCEEEEe
Confidence 422111 01 12222 244999999999 999999999998 9999998888 6555421 47788777
No 394
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=2e-13 Score=123.64 Aligned_cols=125 Identities=18% Similarity=0.201 Sum_probs=83.5
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCCCCCCCC-C--------CCChhhhh---------hHHHHH
Q 026486 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYP-V--------AMDIRELI---------SLEDVM 63 (238)
Q Consensus 2 ~~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~~-~--------~~~i~~~i---------~~~~~l 63 (238)
---++|+||||.|||||++.+.|-+.|+.|+..-+-. -.++++ | .-+.-+++ .++..+
T Consensus 613 dSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhr----L~iG~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~L 688 (807)
T KOG0066|consen 613 DSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHR----LRIGWFDQHANEALNGEETPVEYLQRKFNLPYQEARKQL 688 (807)
T ss_pred cceeEEECCCCccHHHHHHHHhcCCCCCcchhhccce----eeeechhhhhHHhhccccCHHHHHHHhcCCChHHHHHHh
Confidence 3458999999999999999999999999997653210 011110 0 00111111 266677
Q ss_pred HHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEE
Q 026486 64 EELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVY 137 (238)
Q Consensus 64 ~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~tvi~v~ 137 (238)
..+||......+. +..+++++. +++|.--.. .|++|||||||+ ||+.+...+. +.++.+ +..||+|+
T Consensus 689 G~fGL~sHAHTik-ikdLSGGQKaRValaeLal~--~PDvlILDEPTNNLDIESIDALa-EAIney---~GgVi~Vs 758 (807)
T KOG0066|consen 689 GTFGLASHAHTIK-IKDLSGGQKARVALAELALG--GPDVLILDEPTNNLDIESIDALA-EAINEY---NGGVIMVS 758 (807)
T ss_pred hhhhhhhccceEe-eeecCCcchHHHHHHHHhcC--CCCEEEecCCCCCcchhhHHHHH-HHHHhc---cCcEEEEe
Confidence 7888876543332 235666664 777765556 999999999998 9999987776 655554 34576773
No 395
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.42 E-value=2.3e-13 Score=112.09 Aligned_cols=125 Identities=14% Similarity=0.196 Sum_probs=73.8
Q ss_pred eEEEEcCCCCcHHHHHHHHH-hCCcCCCceEEEeeecCCCCCCCCCCCCChhhhhhHHHHHHHcCCCCCCchhhhHHhhh
Q 026486 4 AQLVIGPAGSGKSTYCSSLY-RHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~-g~l~~~~G~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~~~ 82 (238)
+++|.||||||||||+|.+. ..+.++.|....-. .-.+++. ++++..++....... ....++
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~----~~~~~~~-----------d~il~~~~~~d~~~~--~~s~fs 63 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAE----SAELPVF-----------DRIFTRIGASDSLAQ--GLSTFM 63 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeeh----heEeccc-----------ceEEEEeCCCCchhc--cccHHH
Confidence 36799999999999999998 44444444422110 0112221 111222222221110 112344
Q ss_pred hhHHHHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC-CCeEEEEEecccccccchhHHH
Q 026486 83 DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFNVCAVYLLDSQFITDVTKFI 151 (238)
Q Consensus 83 ~~~s~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~~tvi~v~l~d~~~~~d~~~~~ 151 (238)
.++ ..+++++....+|+++++|||+. +|+.....+...+++.+.++ +.+++++ +|+. +...++
T Consensus 64 ~~~-~~l~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~----TH~~-~l~~~~ 128 (185)
T smart00534 64 VEM-KETANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFA----THYH-ELTKLA 128 (185)
T ss_pred HHH-HHHHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEE----ecHH-HHHHHh
Confidence 455 45555555444899999999998 99998888765788888764 7777666 4665 344443
No 396
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.40 E-value=1.8e-12 Score=119.74 Aligned_cols=144 Identities=19% Similarity=0.256 Sum_probs=81.9
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCcCCCceEEEe--e--ecCCCC---------------CCCC-----CC---CCC-----
Q 026486 5 QLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV--N--LDPAAE---------------NFDY-----PV---AMD----- 52 (238)
Q Consensus 5 v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~--~--~d~~~~---------------~~~~-----~~---~~~----- 52 (238)
+||+|||||||||++++++|-..|..-.+-+- . ..|... .+.| .+ +.+
T Consensus 104 ygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~av~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~ 183 (614)
T KOG0927|consen 104 YGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQAVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELD 183 (614)
T ss_pred EEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHHHHHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHH
Confidence 58999999999999999999888754443321 1 111100 0000 00 000
Q ss_pred -hhhh--------hh--HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHH
Q 026486 53 -IREL--------IS--LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (238)
Q Consensus 53 -i~~~--------i~--~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~ 118 (238)
+.+. +. +.++|-.+|..+....... ..+++|.+ .+|||+|.. +|++|+|||||+ ||+.+...+
T Consensus 184 ~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~-~~~SgGwrmR~aLAr~Lf~--kP~LLLLDEPtnhLDleA~~wL 260 (614)
T KOG0927|consen 184 ELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKV-KDLSGGWRMRAALARALFQ--KPDLLLLDEPTNHLDLEAIVWL 260 (614)
T ss_pred HHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHh-hccCchHHHHHHHHHHHhc--CCCEEEecCCccCCCHHHHHHH
Confidence 0000 00 3334444444443322222 23555543 999999999 999999999999 999998665
Q ss_pred HHHHHHHHHhCCCeEEEEEecccccccchhHHHhhhHHHH
Q 026486 119 LRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASL 158 (238)
Q Consensus 119 ~~~ll~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~ 158 (238)
- +.+.+.. ++ +++++ +|.-.-...+|..++-..
T Consensus 261 e-e~L~k~d-~~-~lVi~----sh~QDfln~vCT~Ii~l~ 293 (614)
T KOG0927|consen 261 E-EYLAKYD-RI-ILVIV----SHSQDFLNGVCTNIIHLD 293 (614)
T ss_pred H-HHHHhcc-Cc-eEEEE----ecchhhhhhHhhhhheec
Confidence 5 5555442 22 44444 354444455666554433
No 397
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.40 E-value=8.5e-13 Score=110.02 Aligned_cols=113 Identities=19% Similarity=0.158 Sum_probs=64.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCC-cCCCceEEEeeecCC-CCCCCCCCCCChhhhhhHHHHHHHcCCCCCCchhhhHHhh
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHC-ETVRRTMHIVNLDPA-AENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l-~~~~G~i~i~~~d~~-~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~~ 81 (238)
.++|+||||||||||++++++.. .+..|... |+ ...+++.. .+...+...+.+ ... +..+
T Consensus 31 ~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~-----~~~~~~i~~~d--qi~~~~~~~d~i-----~~~------~s~~ 92 (202)
T cd03243 31 LLLITGPNMGGKSTYLRSIGLAVLLAQIGCFV-----PAESASIPLVD--RIFTRIGAEDSI-----SDG------RSTF 92 (202)
T ss_pred EEEEECCCCCccHHHHHHHHHHHHHHHcCCCc-----cccccccCCcC--EEEEEecCcccc-----cCC------ceeH
Confidence 58999999999999999999543 23333211 11 11222211 000001111100 000 1122
Q ss_pred hhhHH-HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 026486 82 EDNLD-DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (238)
Q Consensus 82 ~~~~s-~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~tvi~v 136 (238)
..++. ...+.+.+. +|+++|+|||++ +|+..+..+...+++.+.+.+.+++++
T Consensus 93 ~~e~~~l~~i~~~~~--~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~ 147 (202)
T cd03243 93 MAELLELKEILSLAT--PRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFA 147 (202)
T ss_pred HHHHHHHHHHHHhcc--CCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEE
Confidence 22331 222333445 999999999999 999998888746778777667777776
No 398
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.39 E-value=8.9e-13 Score=109.07 Aligned_cols=156 Identities=15% Similarity=0.205 Sum_probs=105.5
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCCC-------CCCC-----------CCCCChhhhhhHHHHHHHc
Q 026486 5 QLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE-------NFDY-----------PVAMDIRELISLEDVMEEL 66 (238)
Q Consensus 5 v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~-------~~~~-----------~~~~~i~~~i~~~~~l~~~ 66 (238)
..++|.||||||||+|+++|-.-.-.|.|.+.|.++-.+ .+.| ..++.+.-.+++++++.-+
T Consensus 43 cLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgdl~YLGgeW~~~~~~agevplq~D~sae~mifgV 122 (291)
T KOG2355|consen 43 CLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGDLSYLGGEWSKTVGIAGEVPLQGDISAEHMIFGV 122 (291)
T ss_pred EEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCceeEecccccccccccccccccccccHHHHHhhc
Confidence 468999999999999999997777779999999887331 1222 1111122233444444333
Q ss_pred CCC-CC----------CchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CCC
Q 026486 67 GLG-PN----------GGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNF 131 (238)
Q Consensus 67 ~l~-~~----------~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~~ 131 (238)
+-. |. -.....|+..+.+++ +.|+..|.. .=++|+|||-|- ||...+..++ ++++.-.+ +|.
T Consensus 123 ~g~dp~Rre~LI~iLDIdl~WRmHkvSDGqrRRVQicMGLL~--PfkVLLLDEVTVDLDVlARadLL-eFlkeEce~Rga 199 (291)
T KOG2355|consen 123 GGDDPERREKLIDILDIDLRWRMHKVSDGQRRRVQICMGLLK--PFKVLLLDEVTVDLDVLARADLL-EFLKEECEQRGA 199 (291)
T ss_pred cCCChhHhhhhhhheeccceEEEeeccccchhhhHHHHhccc--ceeEEEeeeeEeehHHHHHHHHH-HHHHHHHhhcCc
Confidence 321 11 012233455666654 888888877 779999999998 9999999999 88877654 688
Q ss_pred eEEEEEecccccccchhHHHhhhHHHHHHHHhhcCC
Q 026486 132 NVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELP 167 (238)
Q Consensus 132 tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~~~p 167 (238)
||+.. +|.+.-.+++-+.+....+|.+....|
T Consensus 200 tIVYA----THIFDGLe~Wpthl~yi~~Gkl~~~l~ 231 (291)
T KOG2355|consen 200 TIVYA----THIFDGLETWPTHLVYIKSGKLVDNLK 231 (291)
T ss_pred EEEEE----eeeccchhhcchhEEEecCCeeeeccc
Confidence 88766 477777777777776666666655443
No 399
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.38 E-value=3.9e-13 Score=111.60 Aligned_cols=151 Identities=17% Similarity=0.245 Sum_probs=99.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCC----CceEEEeeecC-----CC------CCCCC-CCC----CChhhh-----h
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETV----RRTMHIVNLDP-----AA------ENFDY-PVA----MDIREL-----I 57 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~----~G~i~i~~~d~-----~~------~~~~~-~~~----~~i~~~-----i 57 (238)
-+-+++|.+|||||-..|+++|..+.. .-+..+++.|. .. .++.. +|+ +|..+. +
T Consensus 34 Ei~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlI 113 (330)
T COG4170 34 EIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLI 113 (330)
T ss_pred eeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhhhhcCchhhcChHHHHHHHHH
Confidence 356899999999999999999987642 23344444442 11 11111 110 111111 1
Q ss_pred ---------------------hHHHHHHHcCCCCCCchhhhH--Hhhh-hhHHHHHHHHHhccCCCCEEEEeCCCc-ccH
Q 026486 58 ---------------------SLEDVMEELGLGPNGGLIYCM--EHLE-DNLDDWLAEELDNYLDDDYLVFDCPGQ-IEL 112 (238)
Q Consensus 58 ---------------------~~~~~l~~~~l~~~~~~~~~~--~~~~-~~~s~~la~~l~~~~~p~~lilDEPt~-LD~ 112 (238)
.+-+++.++|+........+. +.-. +.+.+.||.|++. +|+++|.||||+ +|+
T Consensus 114 q~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTeGE~QKVMIA~A~An--qPrLLIADEPTN~~e~ 191 (330)
T COG4170 114 QNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQKVMIAIALAN--QPRLLIADEPTNSMEP 191 (330)
T ss_pred hhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhccCcceeeeeehhhcc--CCceEeccCCCcccCc
Confidence 155677888887765443221 1111 1123889999999 999999999999 999
Q ss_pred HhHHHHHHHHHHHHHhC-CCeEEEEEecccccccchhHHHhhhHHHHHH
Q 026486 113 FTHVPVLRNFVDHLKSR-NFNVCAVYLLDSQFITDVTKFISGCMASLSA 160 (238)
Q Consensus 113 ~~~~~~~~~ll~~l~~~-~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~ 160 (238)
.++.+++ +++.++++. |.+++++ +|.+...+.+++.+-+...|
T Consensus 192 ~Tq~Qif-RLLs~mNQn~~TtILL~----s~Dl~~is~W~d~i~VlYCG 235 (330)
T COG4170 192 TTQAQIF-RLLSRLNQNSNTTILLI----SHDLQMISQWADKINVLYCG 235 (330)
T ss_pred cHHHHHH-HHHHHhhccCCceEEEE----cccHHHHHHHhhheEEEEec
Confidence 9999999 999999874 6666555 68888888888765444333
No 400
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.37 E-value=6.3e-13 Score=111.97 Aligned_cols=42 Identities=10% Similarity=0.055 Sum_probs=34.4
Q ss_pred HHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC-C-CeEEEE
Q 026486 92 ELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-N-FNVCAV 136 (238)
Q Consensus 92 ~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~-~tvi~v 136 (238)
+++. +|+++++|||++ +|+.++..++ +++.++.++ | .+++++
T Consensus 144 ~~~~--~p~llllDEP~~~LD~~~~~~i~-~~l~~~~~~~g~~~viii 188 (213)
T cd03277 144 QELT--RCPFRVVDEINQGMDPTNERKVF-DMLVETACKEGTSQYFLI 188 (213)
T ss_pred Hhcc--CCCEEEEecccccCCHHHHHHHH-HHHHHHhhcCCCceEEEE
Confidence 3346 999999999998 9999999999 888888655 5 456666
No 401
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=1.2e-12 Score=120.27 Aligned_cols=122 Identities=20% Similarity=0.181 Sum_probs=86.8
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCCCCCCCC-C-CCC-----h--hhhh----------hHHHHHHH
Q 026486 5 QLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYP-V-AMD-----I--RELI----------SLEDVMEE 65 (238)
Q Consensus 5 v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~~-~-~~~-----i--~~~i----------~~~~~l~~ 65 (238)
++++|+||+||||+++++.|-+.|..|.+.+... ..+.|+ | ..+ + -+.. .++.-+..
T Consensus 393 i~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~r----~ri~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~ 468 (582)
T KOG0062|consen 393 ISRVGENGDGKSTLLKILKGDLTPTRGIVGRHPR----LRIKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGS 468 (582)
T ss_pred hheeccCchhHHHHHHHHhccCCcccceeeeccc----ceecchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHh
Confidence 5789999999999999999999999998876642 223331 1 000 0 0000 26777888
Q ss_pred cCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEE
Q 026486 66 LGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVY 137 (238)
Q Consensus 66 ~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~tvi~v~ 137 (238)
+|+....+... +..+++++. +++|..... +|.+|+|||||+ ||..+-..+. +.++..+..||+|+
T Consensus 469 ~Gl~g~la~~s-i~~LSGGQKsrvafA~~~~~--~PhlLVLDEPTNhLD~dsl~AL~----~Al~~F~GGVv~VS 536 (582)
T KOG0062|consen 469 FGLSGELALQS-IASLSGGQKSRVAFAACTWN--NPHLLVLDEPTNHLDRDSLGALA----KALKNFNGGVVLVS 536 (582)
T ss_pred cCCCchhhhcc-ccccCCcchhHHHHHHHhcC--CCcEEEecCCCccccHHHHHHHH----HHHHhcCCcEEEEE
Confidence 99987665554 556777775 778877777 999999999999 9998875544 44555445677884
No 402
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.35 E-value=5.2e-12 Score=101.80 Aligned_cols=114 Identities=15% Similarity=0.107 Sum_probs=69.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCCCCCCC-CCCCChhhhhhHHHHHHHcCCCCCCchhhhHHhhh
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDY-PVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~-~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~~~ 82 (238)
.++|+|||||||||+++.+....-...|.+... .+. ..++ .+...+. . +....+ ++
T Consensus 23 ~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~-~~~---~~g~~~~~~~~~----~--i~~~~~-------------lS 79 (162)
T cd03227 23 LTIITGPNGSGKSTILDAIGLALGGAQSATRRR-SGV---KAGCIVAAVSAE----L--IFTRLQ-------------LS 79 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcchhhhcc-Ccc---cCCCcceeeEEE----E--ehheee-------------cc
Confidence 678999999999999999877665555444331 110 1111 1111100 0 111111 12
Q ss_pred hhH--HHHHHHHHhccC--CCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEEeccccccc
Q 026486 83 DNL--DDWLAEELDNYL--DDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFIT 145 (238)
Q Consensus 83 ~~~--s~~la~~l~~~~--~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~tvi~v~l~d~~~~~ 145 (238)
+++ ...+++++.... +|+++++|||+. +|+..+..+. +.+.++.+++.+++++ +|+..
T Consensus 80 ~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~-~~l~~~~~~~~~vii~----TH~~~ 142 (162)
T cd03227 80 GGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALA-EAILEHLVKGAQVIVI----THLPE 142 (162)
T ss_pred ccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhcCCEEEEE----cCCHH
Confidence 222 277788887522 689999999999 9999999998 6666654446677666 46554
No 403
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.33 E-value=1e-11 Score=129.32 Aligned_cols=87 Identities=18% Similarity=0.148 Sum_probs=63.9
Q ss_pred HHHHHcCCCCC-CchhhhHHhhhhhHH--HHHHHHHh---ccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeE
Q 026486 61 DVMEELGLGPN-GGLIYCMEHLEDNLD--DWLAEELD---NYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNV 133 (238)
Q Consensus 61 ~~l~~~~l~~~-~~~~~~~~~~~~~~s--~~la~~l~---~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~tv 133 (238)
++++.+|++.. .+.. ...++++++ +.||++++ . +|+++||||||+ ||+..+..++ ++++++++.|.++
T Consensus 791 ~~L~~vGL~~l~l~q~--~~tLSGGE~QRV~LAraL~~~~~--~P~LLILDEPTsGLD~~~~~~Ll-~lL~~L~~~G~TV 865 (1809)
T PRK00635 791 HALCSLGLDYLPLGRP--LSSLSGGEIQRLKLAYELLAPSK--KPTLYVLDEPTTGLHTHDIKALI-YVLQSLTHQGHTV 865 (1809)
T ss_pred HHHHHcCCcchhhcCc--cccCCHHHHHHHHHHHHHhhcCC--CCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhcCCEE
Confidence 36677788653 1221 234555543 89999997 5 899999999999 9999999999 9999998788898
Q ss_pred EEEEecccccccchhHHHhhhHHH
Q 026486 134 CAVYLLDSQFITDVTKFISGCMAS 157 (238)
Q Consensus 134 i~v~l~d~~~~~d~~~~~~~~l~~ 157 (238)
|++ +|.+... .+++.++..
T Consensus 866 IiI----sHdl~~i-~~aDrVi~L 884 (1809)
T PRK00635 866 VII----EHNMHVV-KVADYVLEL 884 (1809)
T ss_pred EEE----eCCHHHH-HhCCEEEEE
Confidence 887 4776655 555544433
No 404
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.32 E-value=4.8e-12 Score=103.73 Aligned_cols=50 Identities=10% Similarity=0.085 Sum_probs=41.1
Q ss_pred HHHHHHHhc--cCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEE
Q 026486 87 DWLAEELDN--YLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVY 137 (238)
Q Consensus 87 ~~la~~l~~--~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~tvi~v~ 137 (238)
+.+|++++. +.+|+++++|||++ +|+..+..+. +.+.++.+.|.+++++.
T Consensus 103 ~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~-~~L~~~~~~g~tiIiiS 155 (178)
T cd03239 103 SALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVS-DMIKEMAKHTSQFIVIT 155 (178)
T ss_pred HHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhCCCEEEEEE
Confidence 788888752 12899999999999 9999999998 88888866677887773
No 405
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.29 E-value=1.6e-11 Score=103.49 Aligned_cols=117 Identities=15% Similarity=0.159 Sum_probs=67.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHh--CCcCCCceEEEeeecCCCCCCCC-CCCCChhhhhhHHHHHHHcCCCCCCchhhhHHh
Q 026486 4 AQLVIGPAGSGKSTYCSSLYR--HCETVRRTMHIVNLDPAAENFDY-PVAMDIRELISLEDVMEELGLGPNGGLIYCMEH 80 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g--~l~~~~G~i~i~~~d~~~~~~~~-~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~ 80 (238)
.++|.||||+|||||+|.+.. ++ +..|...... . -.++| .+.++ .++...........
T Consensus 31 ~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~-~---~~~~~~d~i~~--------------~l~~~~si~~~~S~ 91 (213)
T cd03281 31 IMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPAD-S---ATIGLVDKIFT--------------RMSSRESVSSGQSA 91 (213)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcC-C---cEEeeeeeeee--------------eeCCccChhhccch
Confidence 578999999999999999983 33 4555544321 0 11222 11100 00111001000112
Q ss_pred hhhhHH-HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCC--C-eEEEEEeccccccc
Q 026486 81 LEDNLD-DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN--F-NVCAVYLLDSQFIT 145 (238)
Q Consensus 81 ~~~~~s-~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~--~-tvi~v~l~d~~~~~ 145 (238)
+...++ +.++.+++. +|+++++|||+. +|+.....+...+++++.+.+ . +++++ +|+..
T Consensus 92 f~~el~~l~~~l~~~~--~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~----TH~~~ 155 (213)
T cd03281 92 FMIDLYQVSKALRLAT--RRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVS----THFHE 155 (213)
T ss_pred HHHHHHHHHHHHHhCC--CCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEE----cChHH
Confidence 223332 556666667 999999999998 999876666547888886542 2 44444 56654
No 406
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.28 E-value=2.2e-11 Score=106.06 Aligned_cols=39 Identities=23% Similarity=0.259 Sum_probs=36.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA 41 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~ 41 (238)
..++|+||||||||||++.++|.+++..|++.++|.++.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~ 150 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVG 150 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEee
Confidence 357999999999999999999999999999999998764
No 407
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.27 E-value=1.5e-11 Score=122.47 Aligned_cols=79 Identities=18% Similarity=0.188 Sum_probs=56.5
Q ss_pred HHHHHcCCCCC-CchhhhHHhhhhhHH--HHHHHHHhcc-CCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEE
Q 026486 61 DVMEELGLGPN-GGLIYCMEHLEDNLD--DWLAEELDNY-LDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCA 135 (238)
Q Consensus 61 ~~l~~~~l~~~-~~~~~~~~~~~~~~s--~~la~~l~~~-~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~tvi~ 135 (238)
++++.+||+.. .+. ....++++.+ +.||+++..- .+|+++|||||++ ||+..+..++ ++++++.++|.++|+
T Consensus 810 ~~L~~~gL~~l~l~~--~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~-~~L~~l~~~G~TVIv 886 (924)
T TIGR00630 810 QTLCDVGLGYIKLGQ--PATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLL-EVLQRLVDQGNTVVV 886 (924)
T ss_pred HHHHHcCCCchhhcC--ccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhCCCEEEE
Confidence 45556677532 111 1234555543 8899999851 1489999999999 9999999999 999999877888887
Q ss_pred EEecccccccc
Q 026486 136 VYLLDSQFITD 146 (238)
Q Consensus 136 v~l~d~~~~~d 146 (238)
+. |....
T Consensus 887 i~----H~~~~ 893 (924)
T TIGR00630 887 IE----HNLDV 893 (924)
T ss_pred Ee----CCHHH
Confidence 73 66643
No 408
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.26 E-value=1.8e-11 Score=102.40 Aligned_cols=118 Identities=15% Similarity=0.180 Sum_probs=71.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcC-CCceEEEeeec-CCCCCCCCCCCCChhhhhhHHHHHHHcCCCCCCchhhhHHhh
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCET-VRRTMHIVNLD-PAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~-~~G~i~i~~~d-~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~~ 81 (238)
+++|+|||||||||+++.++++.-- .-| .. |+. ...+++. ++++..++...+.. .....+
T Consensus 31 ~~~l~G~n~~GKstll~~i~~~~~la~~G------~~vpa~-----~~~l~~~-----d~I~~~~~~~d~~~--~~~S~f 92 (204)
T cd03282 31 FHIITGPNMSGKSTYLKQIALLAIMAQIG------CFVPAE-----YATLPIF-----NRLLSRLSNDDSME--RNLSTF 92 (204)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHcC------CCcchh-----hcCccCh-----hheeEecCCccccc--hhhhHH
Confidence 5799999999999999999987411 111 11 111 1112222 23344444443221 112345
Q ss_pred hhhHH-HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEEeccccccc
Q 026486 82 EDNLD-DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFIT 145 (238)
Q Consensus 82 ~~~~s-~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~tvi~v~l~d~~~~~ 145 (238)
+.+++ ...+.+++. +|+++++|||+. +|+.....+...+++.+.+.+.+++++ +|+..
T Consensus 93 s~e~~~~~~il~~~~--~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~~~~~i~~----TH~~~ 152 (204)
T cd03282 93 ASEMSETAYILDYAD--GDSLVLIDELGRGTSSADGFAISLAILECLIKKESTVFFA----THFRD 152 (204)
T ss_pred HHHHHHHHHHHHhcC--CCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCEEEEE----CChHH
Confidence 55553 222233445 899999999998 999887776657888888778777766 46554
No 409
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.26 E-value=3.8e-11 Score=108.33 Aligned_cols=132 Identities=17% Similarity=0.179 Sum_probs=97.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC--------CcCCCceEEEeeecCCCC-CCCCCCC---CChhhhhh--------HHHH
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRH--------CETVRRTMHIVNLDPAAE-NFDYPVA---MDIRELIS--------LEDV 62 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~--------l~~~~G~i~i~~~d~~~~-~~~~~~~---~~i~~~i~--------~~~~ 62 (238)
-+++|+|++||||||+++.++|. ++|++|.|.+.-...++- .-.+.+. .++-+.+. ..++
T Consensus 410 dvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~~~tilehl~s~tGD~~~AveI 489 (593)
T COG2401 410 DVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILEHLRSKTGDLNAAVEI 489 (593)
T ss_pred CeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCcccccccCchhHHHHHhhccCchhHHHHH
Confidence 46899999999999999999996 478899988754332221 0112222 23444332 6789
Q ss_pred HHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CCCeEEEEE
Q 026486 63 MEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNVCAVY 137 (238)
Q Consensus 63 l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~~tvi~v~ 137 (238)
+++.|+...--.+.+.+.++.++. ..||..++. .|.+++.||-.+ ||..+...+. +-+.++.+ .|.|+++++
T Consensus 490 LnraGlsDAvlyRr~f~ELStGQKeR~KLAkllae--rpn~~~iDEF~AhLD~~TA~rVA-rkiselaRe~giTlivvT 565 (593)
T COG2401 490 LNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAE--RPNVLLIDEFAAHLDELTAVRVA-RKISELAREAGITLIVVT 565 (593)
T ss_pred HHhhccchhhhhhccHhhcCcchHHHHHHHHHHhc--CCCcEEhhhhhhhcCHHHHHHHH-HHHHHHHHHhCCeEEEEe
Confidence 999999865434444566777765 889999999 999999999999 9999999999 66777764 588888774
No 410
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.26 E-value=2.4e-11 Score=121.15 Aligned_cols=77 Identities=18% Similarity=0.223 Sum_probs=57.5
Q ss_pred HHHHHcCCCCC-CchhhhHHhhhhhHH--HHHHHHHhccCCC---CEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeE
Q 026486 61 DVMEELGLGPN-GGLIYCMEHLEDNLD--DWLAEELDNYLDD---DYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNV 133 (238)
Q Consensus 61 ~~l~~~~l~~~-~~~~~~~~~~~~~~s--~~la~~l~~~~~p---~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~tv 133 (238)
+.++.+||+.. .+.. ...++++.+ +.||+++.. +| +++|||||++ ||+..+..++ ++++++.+.|.++
T Consensus 812 ~~L~~vgL~~l~l~~~--~~tLSgGEkQRl~LAraL~~--~p~~~~llILDEPtsGLD~~~~~~L~-~~L~~l~~~G~TV 886 (943)
T PRK00349 812 QTLVDVGLGYIKLGQP--ATTLSGGEAQRVKLAKELSK--RSTGKTLYILDEPTTGLHFEDIRKLL-EVLHRLVDKGNTV 886 (943)
T ss_pred HHHHHCCCCcccccCC--cccCCHHHHHHHHHHHHHhc--CCCCCeEEEEECCCCCCCHHHHHHHH-HHHHHHHhCCCEE
Confidence 45566677641 1111 234555543 899999998 88 9999999999 9999999999 8999997778898
Q ss_pred EEEEecccccccc
Q 026486 134 CAVYLLDSQFITD 146 (238)
Q Consensus 134 i~v~l~d~~~~~d 146 (238)
|++. |....
T Consensus 887 Iiit----H~~~~ 895 (943)
T PRK00349 887 VVIE----HNLDV 895 (943)
T ss_pred EEEe----cCHHH
Confidence 8873 66643
No 411
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.21 E-value=4.9e-11 Score=99.94 Aligned_cols=39 Identities=21% Similarity=0.281 Sum_probs=36.4
Q ss_pred HHHHHHHhccCCCCEEEEeCCC-----c-ccHHhHHHHHHHHHHHHHh
Q 026486 87 DWLAEELDNYLDDDYLVFDCPG-----Q-IELFTHVPVLRNFVDHLKS 128 (238)
Q Consensus 87 ~~la~~l~~~~~p~~lilDEPt-----~-LD~~~~~~~~~~ll~~l~~ 128 (238)
.+||+++.. +|+++++|||+ + ||+.+++.+. ++++++++
T Consensus 161 ~~ia~~l~~--~p~~~~ldEp~~~~~~~~ld~~~~~~~~-~~~~~~~~ 205 (215)
T PTZ00132 161 LWLARRLTN--DPNLVFVGAPALAPEEIQIDPELVAQAE-KELQAAAN 205 (215)
T ss_pred HHHHHHHhh--cccceecCCcccCCCccccCHHHHHHHH-HHHHHHhh
Confidence 789999999 99999999999 9 9999999999 99998864
No 412
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.21 E-value=4.4e-11 Score=101.37 Aligned_cols=122 Identities=14% Similarity=0.165 Sum_probs=71.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCc-CCCceEEEeeecCCCCCCCCCCC-CChhhhhhHHHHHHHcCCCCCCchhhhHHhh
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCE-TVRRTMHIVNLDPAAENFDYPVA-MDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~-~~~G~i~i~~~d~~~~~~~~~~~-~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~~ 81 (238)
+++|.||||||||||++.++-..- ...| ...+.. ..+. .+++++..+++.+.. ......+
T Consensus 32 ~~~l~G~n~~GKstll~~i~~~~~la~~g-------------~~vpa~~~~~~---~~~~il~~~~l~d~~--~~~lS~~ 93 (222)
T cd03285 32 FLIITGPNMGGKSTYIRQIGVIVLMAQIG-------------CFVPCDSADIP---IVDCILARVGASDSQ--LKGVSTF 93 (222)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHHHhC-------------CCcCcccEEEe---ccceeEeeeccccch--hcCcChH
Confidence 679999999999999999873200 0011 000111 0010 134455566665432 1112233
Q ss_pred hhhHHHHHHHHH--hccCCCCEEEEeCC---Cc-ccHHhHHHHHHHHHHHHHh-CCCeEEEEEecccccccchhHHHhhh
Q 026486 82 EDNLDDWLAEEL--DNYLDDDYLVFDCP---GQ-IELFTHVPVLRNFVDHLKS-RNFNVCAVYLLDSQFITDVTKFISGC 154 (238)
Q Consensus 82 ~~~~s~~la~~l--~~~~~p~~lilDEP---t~-LD~~~~~~~~~~ll~~l~~-~~~tvi~v~l~d~~~~~d~~~~~~~~ 154 (238)
..++ ..+++++ +. +|+++|+||| |+ +|...... .+++.+.+ .+.+++++ +|+ .+...+++.+
T Consensus 94 ~~e~-~~~a~il~~~~--~~sLvLLDEp~~gT~~lD~~~~~~---~il~~l~~~~~~~vlis----TH~-~el~~~~~~~ 162 (222)
T cd03285 94 MAEM-LETAAILKSAT--ENSLIIIDELGRGTSTYDGFGLAW---AIAEYIATQIKCFCLFA----THF-HELTALADEV 162 (222)
T ss_pred HHHH-HHHHHHHHhCC--CCeEEEEecCcCCCChHHHHHHHH---HHHHHHHhcCCCeEEEE----ech-HHHHHHhhcC
Confidence 3444 6777777 55 9999999999 88 99988754 44566654 46676655 473 5555555543
No 413
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.17 E-value=1.5e-10 Score=97.63 Aligned_cols=108 Identities=14% Similarity=0.128 Sum_probs=59.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcC-CCceEEEeeecCCCCCCCCC----CCCChhhhhhHHHHHHHcCCCCCCchhhhH
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCET-VRRTMHIVNLDPAAENFDYP----VAMDIRELISLEDVMEELGLGPNGGLIYCM 78 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~-~~G~i~i~~~d~~~~~~~~~----~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~ 78 (238)
+++|+|||||||||++|.+++..-. ..|.. .+.....+++. +.+++.+.+. .+ .
T Consensus 32 ~~~l~Gpn~sGKstllr~i~~~~~l~~~g~~----vp~~~~~i~~~~~i~~~~~~~~~ls---------~g--------~ 90 (216)
T cd03284 32 ILLITGPNMAGKSTYLRQVALIALLAQIGSF----VPASKAEIGVVDRIFTRIGASDDLA---------GG--------R 90 (216)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHhccCCe----eccccceecceeeEeccCCchhhhc---------cC--------c
Confidence 5789999999999999999874311 11211 01111223321 1222222111 00 0
Q ss_pred HhhhhhHHHHHHHHHhccCCCCEEEEeCC---Cc-ccHHhHHHHHHHHHHHHHhC-CCeEEEE
Q 026486 79 EHLEDNLDDWLAEELDNYLDDDYLVFDCP---GQ-IELFTHVPVLRNFVDHLKSR-NFNVCAV 136 (238)
Q Consensus 79 ~~~~~~~s~~la~~l~~~~~p~~lilDEP---t~-LD~~~~~~~~~~ll~~l~~~-~~tvi~v 136 (238)
..+...+ ..++.++....+|+++++||| |+ +|.... ...+++.+.+. +.+++++
T Consensus 91 s~f~~e~-~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~---~~~il~~l~~~~~~~vi~~ 149 (216)
T cd03284 91 STFMVEM-VETANILNNATERSLVLLDEIGRGTSTYDGLSI---AWAIVEYLHEKIGAKTLFA 149 (216)
T ss_pred chHHHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHHHHH---HHHHHHHHHhccCCcEEEE
Confidence 1122222 445555543338999999999 77 887543 22567777665 7777666
No 414
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.16 E-value=2.1e-10 Score=106.93 Aligned_cols=127 Identities=16% Similarity=0.186 Sum_probs=82.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeec-CCC----CCCCCCCCCChhhhh-----------------hHHH
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-PAA----ENFDYPVAMDIRELI-----------------SLED 61 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d-~~~----~~~~~~~~~~i~~~i-----------------~~~~ 61 (238)
-+.|.||||||||+|+|.+.|+-+..+|++..-... |.. ..-||.+.=|.|+.+ .+.+
T Consensus 463 ~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflPQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r 542 (659)
T KOG0060|consen 463 NLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILR 542 (659)
T ss_pred eEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEecCCCCccccchhheeeccCccccccccCCCHHHHHH
Confidence 367999999999999999999999999988764321 010 111222111233322 2555
Q ss_pred HHHHcCCCCC----Cc-----hhhhHHhhhh--hHHHHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC
Q 026486 62 VMEELGLGPN----GG-----LIYCMEHLED--NLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR 129 (238)
Q Consensus 62 ~l~~~~l~~~----~~-----~~~~~~~~~~--~~s~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~ 129 (238)
.++.++|++. |+ ....++.++. .++.++||-+.. +|++-||||-|+ ++......+. +. .++.
T Consensus 543 ~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~--kPk~AiLDE~TSAv~~dvE~~~Y-r~---~r~~ 616 (659)
T KOG0060|consen 543 ILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYH--KPKFAILDECTSAVTEDVEGALY-RK---CREM 616 (659)
T ss_pred HHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhc--CCceEEeechhhhccHHHHHHHH-HH---HHHc
Confidence 6666666542 11 1112333433 245899999999 999999999998 9988776655 44 3446
Q ss_pred CCeEEEE
Q 026486 130 NFNVCAV 136 (238)
Q Consensus 130 ~~tvi~v 136 (238)
|+|.|.|
T Consensus 617 giT~iSV 623 (659)
T KOG0060|consen 617 GITFISV 623 (659)
T ss_pred CCeEEEe
Confidence 8888877
No 415
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.13 E-value=9.1e-11 Score=106.56 Aligned_cols=148 Identities=14% Similarity=0.157 Sum_probs=84.6
Q ss_pred EEEEcCCCCcHHHHHHHHHhC--CcCCCceEEEeeecCCCCCCC-------------------------C-CCCCChhhh
Q 026486 5 QLVIGPAGSGKSTYCSSLYRH--CETVRRTMHIVNLDPAAENFD-------------------------Y-PVAMDIREL 56 (238)
Q Consensus 5 v~IiGpnGSGKSTLl~~l~g~--l~~~~G~i~i~~~d~~~~~~~-------------------------~-~~~~~i~~~ 56 (238)
++++||||-|||||++.|+.- --|..=.|.+....+.....+ + .-+.+..+.
T Consensus 293 YGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaEr 372 (807)
T KOG0066|consen 293 YGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAER 372 (807)
T ss_pred ecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHH
Confidence 589999999999999999863 223334444444333211100 0 001111111
Q ss_pred hh-----------------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHH
Q 026486 57 IS-----------------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHV 116 (238)
Q Consensus 57 i~-----------------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~ 116 (238)
+. ++.++.-+|+.+....+.+ ..++++.+ +.+||||.. +|.+|.|||||+ ||+-...
T Consensus 373 l~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt-~kFSGGWRMRvSLARALfl--EPTLLMLDEPTNHLDLNAVI 449 (807)
T KOG0066|consen 373 LKEVADELRAIGADSAEARARRILAGLGFSKEMQERPT-TKFSGGWRMRVSLARALFL--EPTLLMLDEPTNHLDLNAVI 449 (807)
T ss_pred HHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCc-cccCCceeeehhHHHHHhc--CceeeeecCCccccccceee
Confidence 10 4455555566554333333 34556543 999999999 999999999999 9998764
Q ss_pred HHHHHHHHHHHhCCCeEEEEEecccccccchhHHHhhhHHHHHHHHh
Q 026486 117 PVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQ 163 (238)
Q Consensus 117 ~~~~~ll~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~ 163 (238)
.+- +.++. +.+|+++|+ ||-.++. +.|.-++-.....+.
T Consensus 450 WLd-NYLQg---WkKTLLIVS-HDQgFLD---~VCtdIIHLD~qkLh 488 (807)
T KOG0066|consen 450 WLD-NYLQG---WKKTLLIVS-HDQGFLD---SVCTDIIHLDNQKLH 488 (807)
T ss_pred ehh-hHHhh---hhheeEEEe-cccchHH---HHHHHHhhhhhhhhh
Confidence 433 44444 456887774 4444443 334444433333333
No 416
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.12 E-value=6e-10 Score=102.34 Aligned_cols=157 Identities=15% Similarity=0.161 Sum_probs=117.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecC-CC--------CCCCC----------CCCCChhhhhh-----
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP-AA--------ENFDY----------PVAMDIRELIS----- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~-~~--------~~~~~----------~~~~~i~~~i~----- 58 (238)
-+++|.|-.|-|-+-|+.+|+|+.++.+|+|.++|.|. .. ..++| -+++++.+|+-
T Consensus 285 EIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~ 364 (501)
T COG3845 285 EIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHD 364 (501)
T ss_pred cEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhcc
Confidence 47899999999999999999999999999999999885 11 12333 12344444432
Q ss_pred ------------------HHHHHHHcCCCCCCchhhhHHhhhh-hH-HHHHHHHHhccCCCCEEEEeCCCc-ccHHhHHH
Q 026486 59 ------------------LEDVMEELGLGPNGGLIYCMEHLED-NL-DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVP 117 (238)
Q Consensus 59 ------------------~~~~l~~~~l~~~~~~~~~~~~~~~-~~-s~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~ 117 (238)
..+++++|+..+.+..... ..+++ |+ ++.+||.+.. +|++||+-+||. ||..+...
T Consensus 365 ~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a-~~LSGGNqQK~IlaREl~~--~p~lLI~~qPTrGLDvgA~~~ 441 (501)
T COG3845 365 KKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPA-RSLSGGNQQKLILARELAR--RPDLLIAAQPTRGLDVGAIEF 441 (501)
T ss_pred ccccccccccCHHHHHHHHHHHHHHcCccCCCCCcch-hhcCCcceehhhhhhhhcc--CCCEEEEcCCCccccHHHHHH
Confidence 6788899998754433322 23443 33 3889999999 999999999999 99999988
Q ss_pred HHHHHHHHHHhCCCeEEEEEecccccccchhHHHhhhHHHHHHHHhhcCC
Q 026486 118 VLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELP 167 (238)
Q Consensus 118 ~~~~ll~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~~~p 167 (238)
+. +.+.+.++.|..|+++ |..+.+.-..++++.+...+.+.-..+
T Consensus 442 I~-~~l~e~r~~G~AVLLi----S~dLDEil~lsDrIaVi~~Gri~~~~~ 486 (501)
T COG3845 442 IH-ERLLELRDAGKAVLLI----SEDLDEILELSDRIAVIYEGRIVGIVP 486 (501)
T ss_pred HH-HHHHHHHhcCCEEEEE----ehhHHHHHHhhheeeeeeCCceecccc
Confidence 88 6666777789999888 477877777777776666666554433
No 417
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.11 E-value=3.4e-10 Score=95.95 Aligned_cols=120 Identities=14% Similarity=0.172 Sum_probs=71.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHh-CCcCCCceEEEeeecCCCCCCCCCCCCChhhhhhHHHHHHHcCCCCCCchhhhHHhhh
Q 026486 4 AQLVIGPAGSGKSTYCSSLYR-HCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g-~l~~~~G~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~~~ 82 (238)
+++|+||||+||||+++.+++ .+.++.|...+.. . -.++|... +.-.+...+ .+..+ ...+.
T Consensus 33 ~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~-~---~~~~~~~~--i~~~~~~~d-----~~~~~------~StF~ 95 (222)
T cd03287 33 CQIITGPNMGGKSSYIRQVALITIMAQIGSFVPAS-S---ATLSIFDS--VLTRMGASD-----SIQHG------MSTFM 95 (222)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcC-c---eEEeccce--EEEEecCcc-----ccccc------cchHH
Confidence 578999999999999999999 6778888755431 1 11333211 100000011 00111 12333
Q ss_pred hhHHHHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC-CCeEEEEEeccccccc
Q 026486 83 DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFNVCAVYLLDSQFIT 145 (238)
Q Consensus 83 ~~~s~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~~tvi~v~l~d~~~~~ 145 (238)
..+ ..++..+....++.++|+|||+. .++.....+...+++.+.+. +.+++++ +|+..
T Consensus 96 ~e~-~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~----TH~~~ 155 (222)
T cd03287 96 VEL-SETSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFV----THYPS 155 (222)
T ss_pred HHH-HHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEE----cccHH
Confidence 344 44444444333899999999987 77666666544788888765 6677666 46554
No 418
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.11 E-value=2.2e-10 Score=112.71 Aligned_cols=115 Identities=12% Similarity=0.146 Sum_probs=69.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHhC-CcCCCce-EEEeeecCCCCCCCCCCCCChhhhhhHHHHHHHcCCCCCCchhhhHHhh
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRH-CETVRRT-MHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~-l~~~~G~-i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~~ 81 (238)
.++|+||||+|||||+|.++|. +.+..|- |.... .-.++|.... .. .+++.......+..+
T Consensus 324 ~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa~~----~~~~~~~d~i--~~-----------~i~~~~si~~~LStf 386 (771)
T TIGR01069 324 VLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPANE----HSEIPYFEEI--FA-----------DIGDEQSIEQNLSTF 386 (771)
T ss_pred EEEEECCCCCCchHHHHHHHHHHHHHHhCCCccCCc----cccccchhhe--ee-----------ecChHhHHhhhhhHH
Confidence 5799999999999999999998 5555552 21110 0123331100 00 111111111112344
Q ss_pred hhhHHHHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 026486 82 EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (238)
Q Consensus 82 ~~~~s~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~tvi~v 136 (238)
+.++ ..++..+....+|.++|+|||++ +|+.....+...+++.+.+.|.+++++
T Consensus 387 S~~m-~~~~~il~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viit 441 (771)
T TIGR01069 387 SGHM-KNISAILSKTTENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLIT 441 (771)
T ss_pred HHHH-HHHHHHHHhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 4555 33333333223899999999998 999999988547888887777777665
No 419
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.03 E-value=4.9e-10 Score=97.86 Aligned_cols=55 Identities=16% Similarity=-0.071 Sum_probs=40.4
Q ss_pred hhhhHH--HHHHHHHhcc--CCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEE
Q 026486 81 LEDNLD--DWLAEELDNY--LDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVY 137 (238)
Q Consensus 81 ~~~~~s--~~la~~l~~~--~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~tvi~v~ 137 (238)
++++.+ +.+|++++.. .+|+++++|||++ +|+..+..+. +.++++.+ +.+++++.
T Consensus 171 lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~-~~l~~~~~-~~tii~is 230 (276)
T cd03241 171 ASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVG-KKLKELSR-SHQVLCIT 230 (276)
T ss_pred cChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHH-HHHHHHhC-CCEEEEEe
Confidence 444433 5666544321 2899999999999 9999999999 88888754 67777773
No 420
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.00 E-value=3.3e-09 Score=89.18 Aligned_cols=68 Identities=19% Similarity=0.338 Sum_probs=44.0
Q ss_pred HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHH--HHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeE
Q 026486 59 LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLA--EELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNV 133 (238)
Q Consensus 59 ~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la--~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~tv 133 (238)
+.+.+...++.+. .+++|.+ .+|| -|+....+.++++||||.+ ||...+..+. ++++++.+ +.-+
T Consensus 123 ~~~~l~~~~i~~~--------~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~-~~l~~~~~-~~Q~ 192 (220)
T PF02463_consen 123 LEELLPEVGISPE--------FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLA-DLLKELSK-QSQF 192 (220)
T ss_dssp HHHHHHCTTTTTT--------GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHH-HHHHHHTT-TSEE
T ss_pred ccccccccccccc--------ccccccccccccccccccccccccccccccccccccccccccccc-cccccccc-cccc
Confidence 5666777777765 3455543 2222 2333444778999999999 9999999999 89998854 4566
Q ss_pred EEE
Q 026486 134 CAV 136 (238)
Q Consensus 134 i~v 136 (238)
|++
T Consensus 193 ii~ 195 (220)
T PF02463_consen 193 IIT 195 (220)
T ss_dssp EEE
T ss_pred ccc
Confidence 666
No 421
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.98 E-value=7.3e-09 Score=84.79 Aligned_cols=123 Identities=14% Similarity=0.271 Sum_probs=71.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcC--CCceEEEee-ecCC-C-----------CC--CCCCCCCChhhhhh----HHHH
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCET--VRRTMHIVN-LDPA-A-----------EN--FDYPVAMDIRELIS----LEDV 62 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~--~~G~i~i~~-~d~~-~-----------~~--~~~~~~~~i~~~i~----~~~~ 62 (238)
++.|+|.||||||||+.+|+--... .+|.--+.+ .|+. . .+ .+| .+.-..... ++|+
T Consensus 39 IT~i~GENGsGKSTLLEaiA~~~~~n~aGg~~n~~~~~~~s~s~l~~~~k~~~~~k~~~g~--FlRAEs~yn~as~~De~ 116 (233)
T COG3910 39 ITFITGENGSGKSTLLEAIAAGMGFNAAGGGKNFKGELDASHSALVDYAKLHKRKKPPIGF--FLRAESFYNVASYLDEA 116 (233)
T ss_pred eEEEEcCCCccHHHHHHHHHhhccccccCCCcCcCcccccccchHHHhHHHhhcCCCCcce--EEehhHHHHHHHHHHhh
Confidence 6789999999999999988754432 222211111 1111 0 00 111 011112222 4555
Q ss_pred HHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEE
Q 026486 63 MEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVY 137 (238)
Q Consensus 63 l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~tvi~v~ 137 (238)
..+.+.+++. +...+.+-+ ..+.+.+- +.-+.|||||-+ |-+..+-+++ .+++++.+.|..+|+++
T Consensus 117 ~~e~~~~~~s-----Lh~~SHGEsf~~i~~~rf~---~~GiYiLDEPEa~LSp~RQlell-a~l~~la~sGaQ~IiAT 185 (233)
T COG3910 117 DGEANYGGRS-----LHHMSHGESFLAIFHNRFN---GQGIYILDEPEAALSPSRQLELL-AILRDLADSGAQIIIAT 185 (233)
T ss_pred hhhcccCCcc-----hhhhccchHHHHHHHHHhc---cCceEEecCccccCCHHHHHHHH-HHHHHHHhcCCeEEEEe
Confidence 5444444331 233333322 22333332 567999999998 9999999999 99999998887787773
No 422
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=98.97 E-value=1.6e-09 Score=100.28 Aligned_cols=123 Identities=19% Similarity=0.236 Sum_probs=73.0
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCCCCCCC-CC--CC---Chhhhhh-----------------HHH
Q 026486 5 QLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDY-PV--AM---DIRELIS-----------------LED 61 (238)
Q Consensus 5 v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~-~~--~~---~i~~~i~-----------------~~~ 61 (238)
+.|+||||||||+|.|+|.|+-+...|...+- ....+-| || .+ +.||.|- ...
T Consensus 511 LLItGPNGCGKSSLfRILggLWPvy~g~L~~P----~~~~mFYIPQRPYms~gtlRDQIIYPdS~e~~~~kg~~d~dL~~ 586 (728)
T KOG0064|consen 511 LLITGPNGCGKSSLFRILGGLWPVYNGLLSIP----RPNNIFYIPQRPYMSGGTLRDQIIYPDSSEQMKRKGYTDQDLEA 586 (728)
T ss_pred EEEECCCCccHHHHHHHHhccCcccCCeeecC----CCcceEeccCCCccCcCcccceeecCCcHHHHHhcCCCHHHHHH
Confidence 57999999999999999999998877765532 1111111 11 11 1222211 222
Q ss_pred HHHHcCCCC-------CCchhhhHHhhhhh--HHHHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCC
Q 026486 62 VMEELGLGP-------NGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNF 131 (238)
Q Consensus 62 ~l~~~~l~~-------~~~~~~~~~~~~~~--~s~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~ 131 (238)
++..+.|.. ..+.....+.+++| ++..+||.+-. +|+|-+|||-|+ +-+.....+. +..+..|.
T Consensus 587 iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yH--rPkyalLDEcTsAvsidvE~~i~----~~ak~~gi 660 (728)
T KOG0064|consen 587 ILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYH--RPKYALLDECTSAVSIDVEGKIF----QAAKDAGI 660 (728)
T ss_pred HHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhc--CcchhhhhhhhcccccchHHHHH----HHHHhcCc
Confidence 333222211 11112223445544 34889999988 999999999997 6665554444 33445688
Q ss_pred eEEEEE
Q 026486 132 NVCAVY 137 (238)
Q Consensus 132 tvi~v~ 137 (238)
+++.|+
T Consensus 661 ~llsit 666 (728)
T KOG0064|consen 661 SLLSIT 666 (728)
T ss_pred eEEEee
Confidence 888773
No 423
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.96 E-value=8.7e-09 Score=87.78 Aligned_cols=38 Identities=16% Similarity=0.252 Sum_probs=30.9
Q ss_pred CCCEEEEeCCCc-c----cHHhHHHHHHHHHHHHHhCCCeEEEE
Q 026486 98 DDDYLVFDCPGQ-I----ELFTHVPVLRNFVDHLKSRNFNVCAV 136 (238)
Q Consensus 98 ~p~~lilDEPt~-L----D~~~~~~~~~~ll~~l~~~~~tvi~v 136 (238)
+|+++++|||++ + |+...+.+. ++++.+++.|.+++++
T Consensus 117 ~~~~lVIDe~t~~l~~~~d~~~~~~l~-~~l~~l~~~g~tvi~t 159 (230)
T PRK08533 117 EKDVIIIDSLSSLISNDASEVAVNDLM-AFFKRISSLNKVIILT 159 (230)
T ss_pred CCCEEEEECccHHhcCCcchHHHHHHH-HHHHHHHhCCCEEEEE
Confidence 799999999998 7 777777787 8888887777766555
No 424
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.95 E-value=5.7e-09 Score=82.19 Aligned_cols=120 Identities=18% Similarity=0.184 Sum_probs=66.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCCCCCCCCCCCChhhhhhHHHHHHHcCCCCCCchhhh---HHh
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYC---MEH 80 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~---~~~ 80 (238)
.++|.||||+||||+++.+++...+.++.+.+...+..... ..... ......+...+...... ...
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~--------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 69 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEE--------LTERL---IGESLKGALDNLIIVFATADDPA 69 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHH--------HHHHH---hhhhhccccccEEEEEcCCCCCc
Confidence 36899999999999999999998888888887765432110 00000 00111110000000000 000
Q ss_pred hhhhHHHHHHHHHhccCCCCEEEEeCCCc-ccHHh----------HHHHHHHHHHHHHhCCCeEEEEE
Q 026486 81 LEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFT----------HVPVLRNFVDHLKSRNFNVCAVY 137 (238)
Q Consensus 81 ~~~~~s~~la~~l~~~~~p~~lilDEPt~-LD~~~----------~~~~~~~ll~~l~~~~~tvi~v~ 137 (238)
.......+.+.+... +|+++++|||+. ++... .+.+. ++....++.+.+++++.
T Consensus 70 ~~~~~~~~~~~~~~~--~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~-~l~~~~~~~~~~vv~~~ 134 (165)
T cd01120 70 AARLLSKAERLRERG--GDDLIILDELTRLVRALREIREGYPGELDEELR-ELLERARKGGVTVIFTL 134 (165)
T ss_pred HHHHHHHHHHHHhCC--CCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHH-HHHHHHhcCCceEEEEE
Confidence 000011334445555 899999999997 54432 33333 66666655688887774
No 425
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.92 E-value=1e-09 Score=110.46 Aligned_cols=162 Identities=15% Similarity=0.197 Sum_probs=108.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcC---CCceEEEeeecCCC----CCCCC-------CCCCChhhhhh-----------
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCET---VRRTMHIVNLDPAA----ENFDY-------PVAMDIRELIS----------- 58 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~---~~G~i~i~~~d~~~----~~~~~-------~~~~~i~~~i~----------- 58 (238)
.+.++||+|||||||+++++|-+.. ..|+|.++|.+... ....| .+.+|+++.+.
T Consensus 143 m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVreTldFa~rck~~~~r 222 (1391)
T KOG0065|consen 143 MTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVRETLDFAARCKGPGSR 222 (1391)
T ss_pred eEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEeehhhHHHhccCCccc
Confidence 4679999999999999999997654 25689999987532 22233 22344444432
Q ss_pred -------------HHHHHHHcCCCCCCchhhhH---HhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHH
Q 026486 59 -------------LEDVMEELGLGPNGGLIYCM---EHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVL 119 (238)
Q Consensus 59 -------------~~~~l~~~~l~~~~~~~~~~---~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~ 119 (238)
.+.+++.+||....+....- .-.+++.+ +.++..++. ++++++.||+|. ||..+.-++.
T Consensus 223 ~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~--~~~~~~~De~t~GLDSsTal~ii 300 (1391)
T KOG0065|consen 223 YDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVG--PASILFWDEITRGLDSSTAFQII 300 (1391)
T ss_pred cccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeec--CcceeeeecccccccHHHHHHHH
Confidence 45688999997643222211 11223332 888999999 999999999998 9999999999
Q ss_pred HHHHHHHHhC-CCeEEEEEecccccccchhHHHhhhHHHHHHHHhhcCCeeee
Q 026486 120 RNFVDHLKSR-NFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNI 171 (238)
Q Consensus 120 ~~ll~~l~~~-~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~~~p~~~v 171 (238)
+.++++.+. +.|.++. + .+-..+.-...+.+.+...|.+....|.-++
T Consensus 301 -k~lr~~a~~~~~t~~vs-i--~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~ 349 (1391)
T KOG0065|consen 301 -KALRQLAHITGATALVS-I--LQPSPEIYDLFDDVILLSEGYQIYQGPRDEV 349 (1391)
T ss_pred -HHHHHHHhhhcceEEEE-e--ccCChHHHHhhhheeeeeccceEEeccHHHH
Confidence 888888764 5555433 2 2334455555566666666666666665444
No 426
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.89 E-value=4.6e-09 Score=95.28 Aligned_cols=128 Identities=16% Similarity=0.215 Sum_probs=80.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCc-eEEEeeecCCCCCCCCCCCCChhhhhh------------HHHHHHHcCCCC
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRR-TMHIVNLDPAAENFDYPVAMDIRELIS------------LEDVMEELGLGP 70 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G-~i~i~~~d~~~~~~~~~~~~~i~~~i~------------~~~~l~~~~l~~ 70 (238)
++..+|.||.|||||++.++|.++|+.| ++-..+.....+.+.-....++|+.+. +.++|+-+.+..
T Consensus 369 iivmlgEngtgkTTfi~mlag~~~pd~~~e~p~lnVSykpqkispK~~~tvR~ll~~kIr~ay~~pqF~~dvmkpL~ie~ 448 (592)
T KOG0063|consen 369 IIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPVLNVSYKPQKISPKREGTVRQLLHTKIRDAYMHPQFVNDVMKPLQIEN 448 (592)
T ss_pred eEEEEccCCcchhHHHHHHhcCCCCCccCcccccceeccccccCccccchHHHHHHHHhHhhhcCHHHHHhhhhhhhHHH
Confidence 5778999999999999999999999866 343333222222211111223444432 556666655543
Q ss_pred CCchhhhHHhhhhh--HHHHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH-hCCCeEEEE
Q 026486 71 NGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK-SRNFNVCAV 136 (238)
Q Consensus 71 ~~~~~~~~~~~~~~--~s~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~-~~~~tvi~v 136 (238)
-.++. ...+++| +++++|..+-. .+++.+.|||.+ ||...+.... ..++++. ..++|-.+|
T Consensus 449 i~dqe--vq~lSggelQRval~KOGGK--pAdvYliDEpsAylDSeQRi~As-kvikRfilhakktafvV 513 (592)
T KOG0063|consen 449 IIDQE--VQGLSGGELQRVALALCLGK--PADVYLIDEPSAYLDSEQRIIAS-KVIKRFILHAKKTAFVV 513 (592)
T ss_pred HHhHH--hhcCCchhhHHHHHHHhcCC--CCceEEecCchhhcChHHHHHHH-HHHHHHHHhccchhhhh
Confidence 21111 1223322 34788888877 899999999999 9999988777 6666653 344554344
No 427
>PRK13695 putative NTPase; Provisional
Probab=98.88 E-value=2.7e-09 Score=86.68 Aligned_cols=135 Identities=17% Similarity=0.250 Sum_probs=66.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCC-----CCCCCCCCCCChhhhh-hHHHHHHHcCC-CCCC--ch
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----AENFDYPVAMDIRELI-SLEDVMEELGL-GPNG--GL 74 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~-----~~~~~~~~~~~i~~~i-~~~~~l~~~~l-~~~~--~~ 74 (238)
-++|+|++|||||||++.+.+.+.+ .|. .+.|.-.. .....+ ++.+.. .....+...+. +... ..
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~-~G~-~~~g~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~ 75 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKE-EGY-KVGGFYTEEVREGGKRIGF----KIIDLDTGEEGILARVGFPSRPRVGKY 75 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-CCC-eEEEEEcHHHHhcCCccce----EEEEcCCCCeEEccccCCCCCCceeeE
Confidence 4689999999999999999887765 342 32222110 111111 111100 00111222222 1111 00
Q ss_pred hhhHHhhhhhHHHHHHHHHhccCCCCEEEEeCCCcccHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccchhHHHhhh
Q 026486 75 IYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGC 154 (238)
Q Consensus 75 ~~~~~~~~~~~s~~la~~l~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~ 154 (238)
....+-+ ......+++.... +|+++++|||+.++... .... +.+..+.+.+.+++++. |. .....+++.+
T Consensus 76 ~~~lsgl-e~~~~~l~~~~l~--~~~~lllDE~~~~e~~~-~~~~-~~l~~~~~~~~~~i~v~----h~-~~~~~~~~~i 145 (174)
T PRK13695 76 VVNLEDL-ERIGIPALERALE--EADVIIIDEIGKMELKS-PKFV-KAVEEVLDSEKPVIATL----HR-RSVHPFVQEI 145 (174)
T ss_pred EEehHHH-HHHHHHHHHhccC--CCCEEEEECCCcchhhh-HHHH-HHHHHHHhCCCeEEEEE----Cc-hhhHHHHHHH
Confidence 1111101 1111334444445 89999999987666555 3344 66666656678887773 43 2334455543
No 428
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.88 E-value=2.7e-08 Score=82.80 Aligned_cols=102 Identities=22% Similarity=0.220 Sum_probs=59.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCC-CceEEEeeecCCCCCCCCCCCCChhhhhhHHHHHHHcCCCCCCchhhhHHhhh
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETV-RRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~-~G~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~~~ 82 (238)
.++|.||+||||||+++.+.+.+.+. .|.|...+.++ . ...+.. +..+ .....+.. .
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~-E--~~~~~~---~~~i------~q~~vg~~----------~ 60 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPI-E--FVHESK---RSLI------NQREVGLD----------T 60 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCc-c--ccccCc---ccee------eecccCCC----------c
Confidence 47899999999999999999888754 56666654322 1 111100 0000 00111111 0
Q ss_pred hhHHHHHHHHHhccCCCCEEEEeCCCcccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 026486 83 DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAV 136 (238)
Q Consensus 83 ~~~s~~la~~l~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~tvi~v 136 (238)
..+..++++++.. +|+++++|||. |..... ..++ ....|..++.+
T Consensus 61 ~~~~~~i~~aLr~--~pd~ii~gEir--d~e~~~----~~l~-~a~~G~~v~~t 105 (198)
T cd01131 61 LSFENALKAALRQ--DPDVILVGEMR--DLETIR----LALT-AAETGHLVMST 105 (198)
T ss_pred cCHHHHHHHHhcC--CcCEEEEcCCC--CHHHHH----HHHH-HHHcCCEEEEE
Confidence 1233667888888 99999999997 333221 3333 33567765444
No 429
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=98.86 E-value=2.4e-08 Score=88.58 Aligned_cols=123 Identities=16% Similarity=0.165 Sum_probs=70.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCCCCCCCCCCCChhhhhhHHHHHHHcCCCCCCchhhhHHhhh
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~~~ 82 (238)
-.++|+||+|||||||++++++++++..|.+.+. |+..-....+....+. .. . ...+. ..
T Consensus 145 ~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ie--d~~El~~~~~~~~~l~----~~----~---~~~~~-------~~ 204 (308)
T TIGR02788 145 KNIIISGGTGSGKTTFLKSLVDEIPKDERIITIE--DTREIFLPHPNYVHLF----YS----K---GGQGL-------AK 204 (308)
T ss_pred CEEEEECCCCCCHHHHHHHHHccCCccccEEEEc--CccccCCCCCCEEEEE----ec----C---CCCCc-------Cc
Confidence 3689999999999999999999999988877764 2221111111000000 00 0 00000 00
Q ss_pred hhHHHHHHHHHhccCCCCEEEEeCCCcccHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccchhHHHhhhHHHHH
Q 026486 83 DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLS 159 (238)
Q Consensus 83 ~~~s~~la~~l~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~ 159 (238)
-.+...++.++.. +|+++++|||.. .+.+ .+++.+. .|...++.++ |. .++...++++.....
T Consensus 205 ~~~~~~l~~~Lr~--~pd~ii~gE~r~------~e~~-~~l~a~~-~g~~~~i~T~---Ha-~~~~~~~~Rl~~l~~ 267 (308)
T TIGR02788 205 VTPKDLLQSCLRM--RPDRIILGELRG------DEAF-DFIRAVN-TGHPGSITTL---HA-GSPEEAFEQLALMVK 267 (308)
T ss_pred cCHHHHHHHHhcC--CCCeEEEeccCC------HHHH-HHHHHHh-cCCCeEEEEE---eC-CCHHHHHHHHHHHhh
Confidence 1122556667777 999999999996 3445 6677775 4544323332 33 335555666655433
No 430
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=98.82 E-value=4.4e-08 Score=102.71 Aligned_cols=74 Identities=16% Similarity=0.084 Sum_probs=53.1
Q ss_pred HHHHHcCCCCCC-chhhhHHhhhhh--HHHHHHHHHhcc-CCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEE
Q 026486 61 DVMEELGLGPNG-GLIYCMEHLEDN--LDDWLAEELDNY-LDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCA 135 (238)
Q Consensus 61 ~~l~~~~l~~~~-~~~~~~~~~~~~--~s~~la~~l~~~-~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~tvi~ 135 (238)
+.|.++|||-.. ++. ...++++ +++.||..|..- ..+.++||||||. |++...+.++ +++++|.+.|.|+++
T Consensus 1681 ~~L~~vGLgYl~LGq~--~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll-~~l~~L~~~g~tviv 1757 (1809)
T PRK00635 1681 QALIDNGLGYLPLGQN--LSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALL-VQLRTLVSLGHSVIY 1757 (1809)
T ss_pred HHHHHcCCCeeeCCCc--CCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHH-HHHHHHHhcCCeEEE
Confidence 445566665321 111 2334444 448889888751 1268999999999 9999999999 999999989999988
Q ss_pred EE
Q 026486 136 VY 137 (238)
Q Consensus 136 v~ 137 (238)
|-
T Consensus 1758 ie 1759 (1809)
T PRK00635 1758 ID 1759 (1809)
T ss_pred Ee
Confidence 83
No 431
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=98.82 E-value=1.7e-08 Score=99.68 Aligned_cols=112 Identities=15% Similarity=0.208 Sum_probs=67.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHhC-CcCCCceEEEeeecCCCC--CCCCCCCCChhhhhhHHHHHHHcCCCCCCchhhhHHh
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRH-CETVRRTMHIVNLDPAAE--NFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH 80 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~-l~~~~G~i~i~~~d~~~~--~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~ 80 (238)
+++|.|||++||||++|.+... +-+..|-. -|+.. .++++. .+ + ..++...........
T Consensus 329 ~~iITGpN~gGKTt~lktigl~~~maq~G~~-----vpa~~~~~i~~~~------~i-----~--~~ig~~~si~~~lSt 390 (782)
T PRK00409 329 VLVITGPNTGGKTVTLKTLGLAALMAKSGLP-----IPANEPSEIPVFK------EI-----F--ADIGDEQSIEQSLST 390 (782)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHHHHhCCC-----cccCCCccccccc------eE-----E--EecCCccchhhchhH
Confidence 5789999999999999999654 22222310 11211 233211 11 0 012221111112334
Q ss_pred hhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 026486 81 LEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (238)
Q Consensus 81 ~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~tvi~v 136 (238)
++.++. ..+++++ . +|+++|+|||+. +|+.....+...+++.+.+.|.+++++
T Consensus 391 fS~~m~~~~~Il~~~-~--~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIit 446 (782)
T PRK00409 391 FSGHMTNIVRILEKA-D--KNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIAT 446 (782)
T ss_pred HHHHHHHHHHHHHhC-C--cCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 555552 3444444 4 899999999998 999999888757888887777777666
No 432
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=98.80 E-value=6.4e-08 Score=93.69 Aligned_cols=50 Identities=18% Similarity=0.226 Sum_probs=44.1
Q ss_pred HHHHHHHHHhccCCC---CEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEE
Q 026486 85 LDDWLAEELDNYLDD---DYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVY 137 (238)
Q Consensus 85 ~s~~la~~l~~~~~p---~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~tvi~v~ 137 (238)
+++.||..|.. +. .+.||||||. |-....++++ +.+++|...|-|||+|-
T Consensus 829 QRvKLA~EL~k--~~tg~TlYiLDEPTTGLH~~Di~kLl-~VL~rLvd~GnTViVIE 882 (935)
T COG0178 829 QRVKLAKELSK--RSTGKTLYILDEPTTGLHFDDIKKLL-EVLHRLVDKGNTVIVIE 882 (935)
T ss_pred HHHHHHHHHhh--ccCCCeEEEeCCCCCCCCHHHHHHHH-HHHHHHHhCCCEEEEEe
Confidence 45889999887 54 7999999999 9999999999 99999998999998883
No 433
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.78 E-value=7.5e-08 Score=78.41 Aligned_cols=39 Identities=10% Similarity=0.050 Sum_probs=32.0
Q ss_pred CCCEEEEeCCCc-cc---HHhHHHHHHHHHHHHHhCCCeEEEEE
Q 026486 98 DDDYLVFDCPGQ-IE---LFTHVPVLRNFVDHLKSRNFNVCAVY 137 (238)
Q Consensus 98 ~p~~lilDEPt~-LD---~~~~~~~~~~ll~~l~~~~~tvi~v~ 137 (238)
+|+++++|||++ +| ...+..+. ++++.+++.|.+++++.
T Consensus 95 ~~~~lviD~~~~~~~~~~~~~~~~i~-~l~~~l~~~g~tvi~v~ 137 (187)
T cd01124 95 KAKRVVIDSVSGLLLMEQSTARLEIR-RLLFALKRFGVTTLLTS 137 (187)
T ss_pred CCCEEEEeCcHHHhhcChHHHHHHHH-HHHHHHHHCCCEEEEEe
Confidence 899999999998 88 66666666 88888887888887773
No 434
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.76 E-value=4.8e-08 Score=82.58 Aligned_cols=119 Identities=15% Similarity=0.117 Sum_probs=67.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcC-CCceEEEeeecCCCC-CCCCCCCCChhhhhhHHHHHHHcCCCCCCchhhhHHhh
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCET-VRRTMHIVNLDPAAE-NFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~-~~G~i~i~~~d~~~~-~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~~ 81 (238)
+++|.||||+||||+++.+++..-. ..|-. -|+.. .+++.. .+.-.+...+-+ ..+ ...+
T Consensus 32 ~~~itG~n~~gKs~~l~~i~~~~~la~~G~~-----vpa~~~~i~~~~--~i~~~~~~~d~~-----~~~------~StF 93 (218)
T cd03286 32 ILVLTGPNMGGKSTLLRTVCLAVIMAQMGMD-----VPAKSMRLSLVD--RIFTRIGARDDI-----MKG------ESTF 93 (218)
T ss_pred EEEEECCCCCchHHHHHHHHHHHHHHHcCCc-----cCccccEecccc--EEEEecCccccc-----ccC------cchH
Confidence 5789999999999999999986322 11210 11111 111110 000000000100 011 1223
Q ss_pred hhhHHHHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC-CCeEEEEEeccccccc
Q 026486 82 EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFNVCAVYLLDSQFIT 145 (238)
Q Consensus 82 ~~~~s~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~~tvi~v~l~d~~~~~ 145 (238)
...+ ..+++.+....+|.++++|||+. .++.....+...+++.+.+. +.+++++ +|+..
T Consensus 94 ~~e~-~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~----TH~~e 154 (218)
T cd03286 94 MVEL-SETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFS----THYHS 154 (218)
T ss_pred HHHH-HHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEE----eccHH
Confidence 3333 34444444333899999999998 99999888885668888765 7777666 46654
No 435
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.76 E-value=3e-07 Score=81.99 Aligned_cols=38 Identities=24% Similarity=0.374 Sum_probs=35.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~ 40 (238)
.+++++|||||||||++..|++++.+.+++|.+.+.|+
T Consensus 115 ~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~ 152 (318)
T PRK10416 115 FVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDT 152 (318)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCc
Confidence 57899999999999999999999999889999998886
No 436
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.74 E-value=7.4e-08 Score=83.86 Aligned_cols=47 Identities=15% Similarity=0.045 Sum_probs=33.3
Q ss_pred HhhhhhHH--HHHHHHHh-------ccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 026486 79 EHLEDNLD--DWLAEELD-------NYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (238)
Q Consensus 79 ~~~~~~~s--~~la~~l~-------~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l 126 (238)
+.++.+++ +.+|++++ ...+|+++++|||++ ||+..+..+. +.+.++
T Consensus 182 ~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~-~~l~~~ 238 (270)
T cd03242 182 DFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALL-DAIEGR 238 (270)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHH-HHhhcC
Confidence 34444443 66777664 112999999999999 9999998777 666544
No 437
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.71 E-value=7.1e-08 Score=89.34 Aligned_cols=154 Identities=11% Similarity=0.085 Sum_probs=84.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCCCCCCCCCCCChhhhhhHHHHHHHcCCCCCCchhhhHHhhhh
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLED 83 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~~~~ 83 (238)
.++|+|+||+|||||++.|+++.+++.|.|.+.|.....-. .+. .+.+....+.+...+-..............
T Consensus 160 ~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~-e~~-----~~~l~~~~l~r~v~vv~~~~~~~~~r~~~~ 233 (438)
T PRK07721 160 RVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVR-EFI-----ERDLGPEGLKRSIVVVATSDQPALMRIKGA 233 (438)
T ss_pred EEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHH-HHH-----HhhcChhhhcCeEEEEECCCCCHHHHHHHH
Confidence 57999999999999999999999999999998876542100 000 000000000000000000000000000000
Q ss_pred hHHHHHHHHHhccCCCCEEEEe-----------------CC-C-c-ccHHhHHHHHHHHHHHHHh--CC-CeEEEEEecc
Q 026486 84 NLDDWLAEELDNYLDDDYLVFD-----------------CP-G-Q-IELFTHVPVLRNFVDHLKS--RN-FNVCAVYLLD 140 (238)
Q Consensus 84 ~~s~~la~~l~~~~~p~~lilD-----------------EP-t-~-LD~~~~~~~~~~ll~~l~~--~~-~tvi~v~l~d 140 (238)
..-.++|+-+....+.=++++| || + . +|+.....+. ++++++.+ .| .|.+.+.+++
T Consensus 234 ~~a~~iAEyfr~~g~~Vll~~Dsltr~A~A~rEisl~~ge~P~~~G~dp~~~~~l~-~ller~~~~~~GsIT~~~TVlv~ 312 (438)
T PRK07721 234 YTATAIAEYFRDQGLNVMLMMDSVTRVAMAQREIGLAVGEPPTTKGYTPSVFAILP-KLLERTGTNASGSITAFYTVLVD 312 (438)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeChHHHHHHHHHHHHhcCCCCccccCCHHHHHHHH-HHHHHhcCCCCCCeeeEEEEEEE
Confidence 0002333333221122234444 65 4 4 9999999988 99999863 44 3454455777
Q ss_pred cccccchhHHHhhhHHHHHHHHhhcC
Q 026486 141 SQFITDVTKFISGCMASLSAMVQLEL 166 (238)
Q Consensus 141 ~~~~~d~~~~~~~~l~~~~~~~~~~~ 166 (238)
+|.+.+ .+++.+.....+.+.++.
T Consensus 313 ~hdm~e--~i~d~v~~i~dG~Ivls~ 336 (438)
T PRK07721 313 GDDMNE--PIADTVRGILDGHFVLDR 336 (438)
T ss_pred CCCCCc--hhhhhEEEecCEEEEEec
Confidence 999985 567777777677666553
No 438
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=98.67 E-value=6.4e-09 Score=86.78 Aligned_cols=122 Identities=25% Similarity=0.315 Sum_probs=83.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCCCCCCC-----CCCCChhhhhhHHHHHHHcCCCCCCchhhh
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDY-----PVAMDIRELISLEDVMEELGLGPNGGLIYC 77 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~-----~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~ 77 (238)
+-++++|+.|||||||++.+.+...+......+.+..++.....+ .+..|+.....++.++..+..++++.....
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~ 85 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIVY 85 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEEE
Confidence 678999999999999999999998887777776666665544443 344566666678888999988888755432
Q ss_pred HHhhhhh----HHHHHHHHHhccCC-CCEEEEeCCCcccHHhHHHHHHHHHHHH
Q 026486 78 MEHLEDN----LDDWLAEELDNYLD-DDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (238)
Q Consensus 78 ~~~~~~~----~s~~la~~l~~~~~-p~~lilDEPt~LD~~~~~~~~~~ll~~l 126 (238)
....... ...|....... . +.+.+++-|.+.|.+.+......+.+.+
T Consensus 86 d~~~~~~~~~~~~~~~~~l~~~--~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~ 137 (219)
T COG1100 86 DSTLRESSDELTEEWLEELREL--APDDVPILLVGNKIDLFDEQSSSEEILNQL 137 (219)
T ss_pred ecccchhhhHHHHHHHHHHHHh--CCCCceEEEEecccccccchhHHHHHHhhh
Confidence 1111111 11444333333 3 3699999999999999887663444444
No 439
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.64 E-value=3.9e-07 Score=77.43 Aligned_cols=35 Identities=17% Similarity=0.278 Sum_probs=26.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHH-hCCcCCCceEEEeee
Q 026486 3 YAQLVIGPAGSGKSTYCSSLY-RHCETVRRTMHIVNL 38 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~-g~l~~~~G~i~i~~~ 38 (238)
.++.|.|++|||||||+..++ +.++ .++++.+...
T Consensus 26 ~~~~i~G~~GsGKt~l~~~~~~~~~~-~g~~~~y~~~ 61 (234)
T PRK06067 26 SLILIEGDHGTGKSVLSQQFVYGALK-QGKKVYVITT 61 (234)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHh-CCCEEEEEEc
Confidence 578899999999999998874 4343 4667777654
No 440
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.62 E-value=4.1e-07 Score=81.97 Aligned_cols=102 Identities=24% Similarity=0.228 Sum_probs=59.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcC-CCceEEEeeecCCCCCCCCCCCCChhhhhhHHHHHHHcCCCCCCchhhhHHhhh
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCET-VRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~-~~G~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~~~ 82 (238)
.+.|.||+||||||+++++.+.+.. .++.|.....++. ..++.... .+.- .+.|...
T Consensus 124 ~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E---~~~~~~~~---~i~q----~evg~~~------------ 181 (343)
T TIGR01420 124 LILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIE---YVHRNKRS---LINQ----REVGLDT------------ 181 (343)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChh---hhccCccc---eEEc----cccCCCC------------
Confidence 5789999999999999999997764 4677766543211 01110000 0000 0111110
Q ss_pred hhHHHHHHHHHhccCCCCEEEEeCCCcccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 026486 83 DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAV 136 (238)
Q Consensus 83 ~~~s~~la~~l~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~tvi~v 136 (238)
..+..+++.++.. +|+++++||+. |..+....+ + ....|..++.+
T Consensus 182 ~~~~~~l~~~lr~--~pd~i~vgEir--d~~~~~~~l----~-aa~tGh~v~~T 226 (343)
T TIGR01420 182 LSFANALRAALRE--DPDVILIGEMR--DLETVELAL----T-AAETGHLVFGT 226 (343)
T ss_pred cCHHHHHHHhhcc--CCCEEEEeCCC--CHHHHHHHH----H-HHHcCCcEEEE
Confidence 1233667788888 99999999997 555553333 2 23567775443
No 441
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.61 E-value=4.1e-07 Score=68.78 Aligned_cols=33 Identities=30% Similarity=0.432 Sum_probs=26.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEE
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI 35 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i 35 (238)
-.+.|+||+||||||+++.+++.+......+.+
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~ 35 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIY 35 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEE
Confidence 467899999999999999999998776523333
No 442
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.59 E-value=4.1e-08 Score=86.35 Aligned_cols=39 Identities=23% Similarity=0.290 Sum_probs=34.8
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCCc--CCCceEEEeeecC
Q 026486 2 GYAQLVIGPAGSGKSTYCSSLYRHCE--TVRRTMHIVNLDP 40 (238)
Q Consensus 2 ~~~v~IiGpnGSGKSTLl~~l~g~l~--~~~G~i~i~~~d~ 40 (238)
++++||.|||||||||+++.|.+++. +.+|+|.+.+.|.
T Consensus 62 p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~ 102 (290)
T TIGR00554 62 PYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDG 102 (290)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEeccc
Confidence 48999999999999999999999998 6788998877764
No 443
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.58 E-value=1.4e-07 Score=78.34 Aligned_cols=53 Identities=15% Similarity=0.155 Sum_probs=36.9
Q ss_pred HHHHHHhccCCC-CEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEEecccc
Q 026486 88 WLAEELDNYLDD-DYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQ 142 (238)
Q Consensus 88 ~la~~l~~~~~p-~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~tvi~v~l~d~~ 142 (238)
.+...+....+. .++++|||-+ |.|..++.++ ++++.+.+.+..++++ .|+.+
T Consensus 246 ~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~-~~l~~~~~~~~Qviit-THSp~ 300 (303)
T PF13304_consen 246 SLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLI-ELLKELSKKNIQVIIT-THSPF 300 (303)
T ss_dssp HHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHH-HHHHHTGGGSSEEEEE-ES-GG
T ss_pred HHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHH-HHHHhhCccCCEEEEe-Cccch
Confidence 455555553233 8999999998 9999999999 8887775545666555 34443
No 444
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.51 E-value=5e-07 Score=77.92 Aligned_cols=64 Identities=9% Similarity=0.162 Sum_probs=42.4
Q ss_pred HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHH-HHHHHHHHHHhCCCeEEEEEecccccccchhHHHhhhHHHHHHHHhh
Q 026486 87 DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVP-VLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQL 164 (238)
Q Consensus 87 ~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~-~~~~ll~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~ 164 (238)
..+|+++.. ++++.++ ||. +|..+... .+ +..+...+.+.|++ +|.+.....
T Consensus 146 ~~~Ar~~~~--~gsIt~l--~T~~~d~~~~~~~~i---~~~~~~~~~~~ivl----s~~la~~~~--------------- 199 (249)
T cd01128 146 FGAARNIEE--GGSLTII--ATALVDTGSRMDDVI---FEEFKGTGNMELVL----DRRLAERRI--------------- 199 (249)
T ss_pred HHHhcCCCC--CCceEEe--eeheecCCCcccchH---HHHHhcCCCcEEEE----chHHhhCCC---------------
Confidence 778888777 9999999 998 99766654 43 55555445566555 466653332
Q ss_pred cCCeeeeeccccc
Q 026486 165 ELPHVNILSKMDL 177 (238)
Q Consensus 165 ~~p~~~vlsk~dl 177 (238)
.|.|+|+.+.-.
T Consensus 200 -~paI~vl~s~sr 211 (249)
T cd01128 200 -FPAIDILKSGTR 211 (249)
T ss_pred -CCeEEEcCCCCc
Confidence 377777765443
No 445
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.50 E-value=9.2e-08 Score=81.25 Aligned_cols=38 Identities=29% Similarity=0.285 Sum_probs=33.0
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEE-eeec
Q 026486 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI-VNLD 39 (238)
Q Consensus 2 ~~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i-~~~d 39 (238)
.++++|.||||||||||++.|++.+++.+|.+.+ ...|
T Consensus 33 ~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D 71 (229)
T PRK09270 33 RTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMD 71 (229)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecc
Confidence 4789999999999999999999999999998655 4443
No 446
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.50 E-value=3e-06 Score=68.54 Aligned_cols=38 Identities=24% Similarity=0.309 Sum_probs=32.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~ 40 (238)
|++++.||+||||||++..++..+...+.++.+.+.|+
T Consensus 1 ~~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~ 38 (173)
T cd03115 1 TVILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADT 38 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Confidence 67899999999999999999988776666788887775
No 447
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.50 E-value=1.3e-07 Score=77.88 Aligned_cols=35 Identities=29% Similarity=0.378 Sum_probs=31.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEee
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN 37 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~ 37 (238)
-.++|+|||||||||++++++|+++++.|.+.+.+
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied 60 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAFIPPDERIITIED 60 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECC
Confidence 46899999999999999999999999999888854
No 448
>PRK14974 cell division protein FtsY; Provisional
Probab=98.49 E-value=6e-06 Score=74.16 Aligned_cols=154 Identities=16% Similarity=0.090 Sum_probs=78.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCCCCCCCCCCCChhhhhhHHHHHHHcCCCCCCchhhhHHhhh
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~~~ 82 (238)
++++++||||+||||++..++.++...+.+|.+.+-|+... ...+ ......+.+|+.-..... ..+ ..
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~--------~a~e--qL~~~a~~lgv~v~~~~~-g~d-p~ 208 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRA--------GAIE--QLEEHAERLGVKVIKHKY-GAD-PA 208 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcH--------HHHH--HHHHHHHHcCCceecccC-CCC-HH
Confidence 68999999999999999999999887767888776553210 0011 123344445542211000 000 00
Q ss_pred hhHHHHHHHHHhccCCCCEEEEeCCCcc--cHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccchhHHHhhhHHHHHH
Q 026486 83 DNLDDWLAEELDNYLDDDYLVFDCPGQI--ELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSA 160 (238)
Q Consensus 83 ~~~s~~la~~l~~~~~p~~lilDEPt~L--D~~~~~~~~~~ll~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~ 160 (238)
.-...++..+-.. +.+++|+|+|+.+ |.....++- .+.+.. +...++ + ++|+..-.+...-+. .
T Consensus 209 ~v~~~ai~~~~~~--~~DvVLIDTaGr~~~~~~lm~eL~-~i~~~~-~pd~~i-L--Vl~a~~g~d~~~~a~-------~ 274 (336)
T PRK14974 209 AVAYDAIEHAKAR--GIDVVLIDTAGRMHTDANLMDELK-KIVRVT-KPDLVI-F--VGDALAGNDAVEQAR-------E 274 (336)
T ss_pred HHHHHHHHHHHhC--CCCEEEEECCCccCCcHHHHHHHH-HHHHhh-CCceEE-E--eeccccchhHHHHHH-------H
Confidence 0011222223334 6789999999963 554444433 443333 222222 2 344432221111111 0
Q ss_pred HHhhcCCeeeeecccccccchh
Q 026486 161 MVQLELPHVNILSKMDLVTNKK 182 (238)
Q Consensus 161 ~~~~~~p~~~vlsk~dll~~~~ 182 (238)
-...-...--|++|.|--.+.+
T Consensus 275 f~~~~~~~giIlTKlD~~~~~G 296 (336)
T PRK14974 275 FNEAVGIDGVILTKVDADAKGG 296 (336)
T ss_pred HHhcCCCCEEEEeeecCCCCcc
Confidence 0011234567899999976654
No 449
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=98.43 E-value=1e-05 Score=63.25 Aligned_cols=23 Identities=26% Similarity=0.301 Sum_probs=21.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~ 25 (238)
..++++|++|||||||++.+.|.
T Consensus 4 ~~i~~~G~~g~GKttl~~~l~~~ 26 (168)
T cd04163 4 GFVAIVGRPNVGKSTLLNALVGQ 26 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999874
No 450
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=98.43 E-value=2.5e-07 Score=69.56 Aligned_cols=32 Identities=28% Similarity=0.444 Sum_probs=28.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~ 40 (238)
-+++|+||||||||||++++. +|++.++|.|.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di 47 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI------KRKHRLVGDDN 47 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeH
Confidence 468999999999999999986 78999999876
No 451
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.42 E-value=4.3e-07 Score=82.67 Aligned_cols=127 Identities=20% Similarity=0.179 Sum_probs=76.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCC--------CCCCCC--------------CCCC---------C
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--------AENFDY--------------PVAM---------D 52 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~--------~~~~~~--------------~~~~---------~ 52 (238)
+.+++|.||-||||-+++++|-++|.-|.-. .+.+.. .+-..| +|.+ +
T Consensus 102 vlglvgtngigkstAlkilagk~kpnlg~~~-~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr~~k~~ 180 (592)
T KOG0063|consen 102 VLGLVGTNGIGKSTALKILAGKQKPNLGRYD-NPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPRAVKGT 180 (592)
T ss_pred hccccccCcccHHHHHHHHhCCCCCCCCCCC-CCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHHHHHHH
Confidence 4689999999999999999999999877532 111110 010111 1111 1
Q ss_pred hhhhhh-------HHHHHHHcCCCCCCchhhhHHhhhhh--HHHHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHH
Q 026486 53 IRELIS-------LEDVMEELGLGPNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (238)
Q Consensus 53 i~~~i~-------~~~~l~~~~l~~~~~~~~~~~~~~~~--~s~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~l 122 (238)
+...+. ..++++.+.|+...... .+.++++ ++.++|.+... ++++.+||||.+ ||...+.... ..
T Consensus 181 v~~~l~~~~~r~~~~~~~~~~~L~~~~~re--~~~lsggelqrfaia~~~vq--~advyMFDEpSsYLDVKQRLkaA-~~ 255 (592)
T KOG0063|consen 181 VGSLLDRKDERDNKEEVCDQLDLNNLLDRE--VEQLSGGELQRFAIAMVCVQ--KADVYMFDEPSSYLDVKQRLKAA-IT 255 (592)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHhhHHHhh--hhhcccchhhhhhhhhhhhh--hcceeEecCCcccchHHHhhhHH-HH
Confidence 111111 34445544444321111 1223222 23677777777 999999999999 9999998887 88
Q ss_pred HHHHHhCCCeEEEE
Q 026486 123 VDHLKSRNFNVCAV 136 (238)
Q Consensus 123 l~~l~~~~~tvi~v 136 (238)
++.+..-+.-+|+|
T Consensus 256 IRsl~~p~~YiIVV 269 (592)
T KOG0063|consen 256 IRSLINPDRYIIVV 269 (592)
T ss_pred HHHhhCCCCeEEEE
Confidence 88886644445555
No 452
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=98.42 E-value=1.8e-06 Score=68.88 Aligned_cols=19 Identities=32% Similarity=0.448 Sum_probs=17.7
Q ss_pred EEcCCCCcHHHHHHHHHhC
Q 026486 7 VIGPAGSGKSTYCSSLYRH 25 (238)
Q Consensus 7 IiGpnGSGKSTLl~~l~g~ 25 (238)
|+|++|||||||++.+.|.
T Consensus 1 iiG~~~~GKStll~~l~~~ 19 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNA 19 (176)
T ss_pred CCCCCCCcHHHHHHHHhcC
Confidence 5899999999999999985
No 453
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.40 E-value=6.8e-06 Score=70.15 Aligned_cols=38 Identities=16% Similarity=0.099 Sum_probs=29.8
Q ss_pred CCCEEEEeCCCc-------ccHHhHHHHHHHHHHHHHh-CCCeEEEEE
Q 026486 98 DDDYLVFDCPGQ-------IELFTHVPVLRNFVDHLKS-RNFNVCAVY 137 (238)
Q Consensus 98 ~p~~lilDEPt~-------LD~~~~~~~~~~ll~~l~~-~~~tvi~v~ 137 (238)
+|+++|+| |.+ .|......++ +.+.++.+ .|.+++++|
T Consensus 111 ~~~lvviD-pl~~~~~~~~~d~~~~~~~~-~~L~~~a~~~g~avl~v~ 156 (239)
T cd01125 111 RIDLVVID-PLVSFHGVSENDNGAMDAVI-KALRRIAAQTGAAILLVH 156 (239)
T ss_pred CCCEEEEC-ChHHhCCCCcCCHHHHHHHH-HHHHHHHHHhCCEEEEEe
Confidence 99999999 653 5887787888 66777764 588888885
No 454
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=98.40 E-value=2.1e-07 Score=78.84 Aligned_cols=36 Identities=19% Similarity=0.197 Sum_probs=30.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcC--CCceEEEeeec
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCET--VRRTMHIVNLD 39 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~--~~G~i~i~~~d 39 (238)
++||.||||||||||++.|.+.+.+ .++++.+...|
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D 38 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTD 38 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecC
Confidence 5899999999999999999999975 56777775444
No 455
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.39 E-value=1e-05 Score=70.61 Aligned_cols=155 Identities=15% Similarity=0.114 Sum_probs=81.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCCCCCCCCCCCChhhhhhHHHHHHHcCCCCCCchhhhHHhhh
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~~~ 82 (238)
.+++++||+|+||||++..++..+...+.+|.+...|+.. ....-....+.+..++.-..... ..+ ..
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r----------~~a~~ql~~~~~~~~i~~~~~~~-~~d-p~ 140 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFR----------AAAIEQLEEWAKRLGVDVIKQKE-GAD-PA 140 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCC----------HHHHHHHHHHHHhCCeEEEeCCC-CCC-HH
Confidence 5788999999999999999999988777789998877521 11111234445555533110000 000 00
Q ss_pred hhHHHHHHHHHhccCCCCEEEEeCCCc--ccHHhHHHHHHHHHHHHHh-----CCCeEEEEEecccccccchhHHHhhhH
Q 026486 83 DNLDDWLAEELDNYLDDDYLVFDCPGQ--IELFTHVPVLRNFVDHLKS-----RNFNVCAVYLLDSQFITDVTKFISGCM 155 (238)
Q Consensus 83 ~~~s~~la~~l~~~~~p~~lilDEPt~--LD~~~~~~~~~~ll~~l~~-----~~~tvi~v~l~d~~~~~d~~~~~~~~l 155 (238)
......+..+... +-+++|+|.|+. -|.....++. ++.+...+ ...++ +| +|+. . ....+ ..+.
T Consensus 141 ~~~~~~l~~~~~~--~~D~ViIDT~G~~~~d~~~~~el~-~~~~~~~~~~~~~~~~~~-LV--l~a~-~-~~~~~-~~~~ 211 (272)
T TIGR00064 141 AVAFDAIQKAKAR--NIDVVLIDTAGRLQNKVNLMDELK-KIKRVIKKVDKDAPDEVL-LV--LDAT-T-GQNAL-EQAK 211 (272)
T ss_pred HHHHHHHHHHHHC--CCCEEEEeCCCCCcchHHHHHHHH-HHHHHHhcccCCCCceEE-EE--EECC-C-CHHHH-HHHH
Confidence 0000223333345 779999999996 4555444443 44443320 22233 33 3333 1 12221 1111
Q ss_pred HHHHHHHhhcCCeeeeecccccccchh
Q 026486 156 ASLSAMVQLELPHVNILSKMDLVTNKK 182 (238)
Q Consensus 156 ~~~~~~~~~~~p~~~vlsk~dll~~~~ 182 (238)
. ....-.+.--|+||.|--.+.+
T Consensus 212 ~----f~~~~~~~g~IlTKlDe~~~~G 234 (272)
T TIGR00064 212 V----FNEAVGLTGIILTKLDGTAKGG 234 (272)
T ss_pred H----HHhhCCCCEEEEEccCCCCCcc
Confidence 1 0111134668899999977654
No 456
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=98.39 E-value=4.7e-06 Score=82.95 Aligned_cols=62 Identities=16% Similarity=0.171 Sum_probs=41.6
Q ss_pred CCCEEEEeCCCc-cc-HHhHHHHHHHHHHHHHhCCCeEEEEEecccccccchhH--HHhhhHHHHHHHHhh
Q 026486 98 DDDYLVFDCPGQ-IE-LFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTK--FISGCMASLSAMVQL 164 (238)
Q Consensus 98 ~p~~lilDEPt~-LD-~~~~~~~~~~ll~~l~~~~~tvi~v~l~d~~~~~d~~~--~~~~~l~~~~~~~~~ 164 (238)
+|.++++|||.. +| +.....+. +.++.+++.|..++++ +|...+... ....++-.+...+.+
T Consensus 642 ~p~il~iDE~w~~L~~~~~~~~i~-~~lk~~RK~~~~~i~~----TQ~~~d~~~s~~~~~i~~~~~t~I~l 707 (800)
T PRK13898 642 TPSMIVLDEAWALIDNPVFAPKIK-DWLKVLRKLNTFVIFA----TQSVEDASKSAISDTLVQQTATQIFL 707 (800)
T ss_pred CCcEEEEeCChhhCCCHHHHHHHH-HHHHHHHHcCCEEEEE----eCCHHHHHhChhHHHHHHhCCeEEEc
Confidence 899999999998 99 66666666 8888888777777666 366655443 333333333333443
No 457
>PRK00089 era GTPase Era; Reviewed
Probab=98.39 E-value=1e-05 Score=70.91 Aligned_cols=22 Identities=27% Similarity=0.375 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHhC
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRH 25 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~ 25 (238)
.++|+|++|||||||++.+.|-
T Consensus 7 ~V~iiG~pn~GKSTLin~L~g~ 28 (292)
T PRK00089 7 FVAIVGRPNVGKSTLLNALVGQ 28 (292)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999999873
No 458
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.39 E-value=2.1e-06 Score=68.89 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=20.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCc
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCE 27 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~ 27 (238)
++.|+|++|||||||++.+.+..+
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~~~ 25 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTEQH 25 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhccc
Confidence 467999999999999999887643
No 459
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.38 E-value=3e-07 Score=85.26 Aligned_cols=37 Identities=14% Similarity=0.143 Sum_probs=32.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCc-eEEEeeecCC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRR-TMHIVNLDPA 41 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G-~i~i~~~d~~ 41 (238)
-+++|+||||||||||++ +|+.+|++| +|.++|.+..
T Consensus 33 Eiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~ 70 (504)
T TIGR03238 33 SLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSF 70 (504)
T ss_pred CEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECC
Confidence 468999999999999999 788888888 7999998764
No 460
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.37 E-value=1.7e-06 Score=66.05 Aligned_cols=33 Identities=21% Similarity=0.347 Sum_probs=26.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEe
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV 36 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~ 36 (238)
.+.|.||+|+||||+++.++..+...+..+.+.
T Consensus 21 ~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~ 53 (151)
T cd00009 21 NLLLYGPPGTGKTTLARAIANELFRPGAPFLYL 53 (151)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEE
Confidence 578999999999999999999876444444444
No 461
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.36 E-value=8.6e-06 Score=79.80 Aligned_cols=91 Identities=20% Similarity=0.210 Sum_probs=54.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCc--eEEEeeecCCCCCCCCCCCCChhhhhhHHHHHHHcCCCCCCchhhhHHh
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRR--TMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH 80 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G--~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~ 80 (238)
-+++++||||+||||++..|++.+....| +|.+...|... ++ ..+ ....+.+.+|+......
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~R--ig------A~e--QL~~~a~~~gvpv~~~~------ 249 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFR--IG------ALE--QLRIYGRILGVPVHAVK------ 249 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccc--hH------HHH--HHHHHHHhCCCCccccC------
Confidence 47899999999999999999999866555 67777665321 11 111 13334444554322100
Q ss_pred hhhhHHHHHHHHHhccCCCCEEEEeCCCc--ccHH
Q 026486 81 LEDNLDDWLAEELDNYLDDDYLVFDCPGQ--IELF 113 (238)
Q Consensus 81 ~~~~~s~~la~~l~~~~~p~~lilDEPt~--LD~~ 113 (238)
.- ..+..++....+-+++|+|.|+- -|..
T Consensus 250 ---~~-~~l~~al~~~~~~D~VLIDTAGRs~~d~~ 280 (767)
T PRK14723 250 ---DA-ADLRFALAALGDKHLVLIDTVGMSQRDRN 280 (767)
T ss_pred ---CH-HHHHHHHHHhcCCCEEEEeCCCCCccCHH
Confidence 11 11223333322668999999994 5544
No 462
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.34 E-value=7.1e-06 Score=74.57 Aligned_cols=92 Identities=18% Similarity=0.209 Sum_probs=51.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCc--eEEEeeecCCCCCCCCCCCCChhhhhhHHHHHHHcCCCCCCchhhhHHh
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRR--TMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH 80 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G--~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~ 80 (238)
-+++++||||+||||++..|++.+....| +|.+...|... ..-.+. ...+.+.+|+.-... .
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R--------~ga~Eq--L~~~a~~~gv~~~~~------~ 201 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYR--------IGGHEQ--LRIFGKILGVPVHAV------K 201 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEeccccc--------ccHHHH--HHHHHHHcCCceEec------C
Confidence 47889999999999999999987643333 56666544311 011222 222334445432110 0
Q ss_pred hhhhHHHHHHHHHhccCCCCEEEEeCCCc--ccHHh
Q 026486 81 LEDNLDDWLAEELDNYLDDDYLVFDCPGQ--IELFT 114 (238)
Q Consensus 81 ~~~~~s~~la~~l~~~~~p~~lilDEPt~--LD~~~ 114 (238)
-...+ ..++..+.+.+++++|+|+. .|...
T Consensus 202 ~~~~l----~~~l~~l~~~DlVLIDTaG~~~~d~~l 233 (374)
T PRK14722 202 DGGDL----QLALAELRNKHMVLIDTIGMSQRDRTV 233 (374)
T ss_pred CcccH----HHHHHHhcCCCEEEEcCCCCCcccHHH
Confidence 00111 22333333789999999994 66653
No 463
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.33 E-value=1.5e-05 Score=68.74 Aligned_cols=97 Identities=24% Similarity=0.323 Sum_probs=56.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCCCCCCCCCCCChhhhhhHHHHHHHcCCCCCCchhhhHHhhhh
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLED 83 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~~~~ 83 (238)
.++|.||+||||||+++.+...+++. .+.+.... ....+..+. ...+...+|+...+... .....
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~l~~~--~~~~~~~~--------~~~~~~~~~--l~~i~~~lG~~~~~~~~---~~~~~ 109 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKRLDQE--RVVAAKLV--------NTRVDAEDL--LRMVAADFGLETEGRDK---AALLR 109 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCC--CeEEeeee--------CCCCCHHHH--HHHHHHHcCCCCCCCCH---HHHHH
Confidence 57899999999999999999987753 33322211 111233432 44566777776543211 11222
Q ss_pred hHHHHHHHHH-hccCCCCEEEEeCCCcccHHhHHH
Q 026486 84 NLDDWLAEEL-DNYLDDDYLVFDCPGQIELFTHVP 117 (238)
Q Consensus 84 ~~s~~la~~l-~~~~~p~~lilDEPt~LD~~~~~~ 117 (238)
.+...+.... .. ++.++++||.-.++......
T Consensus 110 ~l~~~l~~~~~~~--~~~vliiDe~~~l~~~~~~~ 142 (269)
T TIGR03015 110 ELEDFLIEQFAAG--KRALLVVDEAQNLTPELLEE 142 (269)
T ss_pred HHHHHHHHHHhCC--CCeEEEEECcccCCHHHHHH
Confidence 2322332222 33 67799999966688765433
No 464
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.32 E-value=2.2e-05 Score=67.33 Aligned_cols=31 Identities=16% Similarity=0.174 Sum_probs=26.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHhC--CcCCCceEE
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRH--CETVRRTMH 34 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~--l~~~~G~i~ 34 (238)
.++|+|++||||||++++++|. .+...|.++
T Consensus 28 ~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t 60 (240)
T smart00053 28 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVT 60 (240)
T ss_pred eEEEEcCCCccHHHHHHHHhCCCccccCCCccc
Confidence 4789999999999999999998 555566655
No 465
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.31 E-value=5.4e-07 Score=74.57 Aligned_cols=35 Identities=23% Similarity=0.318 Sum_probs=29.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecC
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~ 40 (238)
+++|.||+|||||||++.|++++ .+|.+.+.+.|.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~~D~ 35 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVIISQDS 35 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEEEecc
Confidence 47999999999999999999998 456777777663
No 466
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.31 E-value=1.2e-05 Score=75.24 Aligned_cols=38 Identities=24% Similarity=0.420 Sum_probs=31.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCc--eEEEeeecC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRR--TMHIVNLDP 40 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G--~i~i~~~d~ 40 (238)
.+++++||||+||||++..|++.+....| +|.+...|+
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt 296 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDS 296 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCc
Confidence 57899999999999999999999876665 466665553
No 467
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.31 E-value=1.6e-06 Score=69.47 Aligned_cols=122 Identities=20% Similarity=0.301 Sum_probs=64.5
Q ss_pred CCeeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeec-----CCCCCCCCCCCCChhhhhh-HHHHHHHcC-----CC
Q 026486 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-----PAAENFDYPVAMDIRELIS-LEDVMEELG-----LG 69 (238)
Q Consensus 1 ~~~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d-----~~~~~~~~~~~~~i~~~i~-~~~~l~~~~-----l~ 69 (238)
|..-++|.|++|+||||+++-++..++..+ ..+.|.- -.....+| +|.+.-+ -..++...+ +|
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g--~kvgGf~t~EVR~gGkR~GF----~Ivdl~tg~~~~la~~~~~~~rvG 77 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKG--YKVGGFITPEVREGGKRIGF----KIVDLATGEEGILARVGFSRPRVG 77 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcC--ceeeeEEeeeeecCCeEeee----EEEEccCCceEEEEEcCCCCcccc
Confidence 345689999999999999999998876542 2222210 01112232 1111000 000111111 22
Q ss_pred CCCchhhhHHhhhhhHHHHHHHHHhccCCCCEEEEeCCCcccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 026486 70 PNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAV 136 (238)
Q Consensus 70 ~~~~~~~~~~~~~~~~s~~la~~l~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~tvi~v 136 (238)
..+-.. +.+..-..-+|.+|+. .+|++|+||-+-++..++ .+. +.+++.-+.++.+|++
T Consensus 78 kY~V~v---~~le~i~~~al~rA~~---~aDvIIIDEIGpMElks~-~f~-~~ve~vl~~~kpliat 136 (179)
T COG1618 78 KYGVNV---EGLEEIAIPALRRALE---EADVIIIDEIGPMELKSK-KFR-EAVEEVLKSGKPLIAT 136 (179)
T ss_pred eEEeeH---HHHHHHhHHHHHHHhh---cCCEEEEecccchhhccH-HHH-HHHHHHhcCCCcEEEE
Confidence 221111 1111111144555543 579999999999999886 344 6667665666666555
No 468
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=98.31 E-value=5.3e-06 Score=66.58 Aligned_cols=118 Identities=21% Similarity=0.270 Sum_probs=69.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCCCCCCCCCCCChhhhhhHHHHHHHcCCCCCCchhhhHHhhhh
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLED 83 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~~~~ 83 (238)
-++++|.+-+|||||++.|+|.. ..+.|. | ..|+... .|
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~------~~v~n~-p---------G~Tv~~~--------------~g----------- 40 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAK------QKVGNW-P---------GTTVEKK--------------EG----------- 40 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS------EEEEES-T---------TSSSEEE--------------EE-----------
T ss_pred EEEEECCCCCCHHHHHHHHHCCC------ceecCC-C---------CCCeeee--------------eE-----------
Confidence 37899999999999999999974 233331 1 1122110 00
Q ss_pred hHHHHHHHHHhccCCCCEEEEeCCCc--ccHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccchhHHHhhhHHHHHHH
Q 026486 84 NLDDWLAEELDNYLDDDYLVFDCPGQ--IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAM 161 (238)
Q Consensus 84 ~~s~~la~~l~~~~~p~~lilDEPt~--LD~~~~~~~~~~ll~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~ 161 (238)
.+ .+.+.++.+.|-|+. +.+.+..+.+ ..+.+.....- ++++++|+..++ +-+......
T Consensus 41 ~~---------~~~~~~~~lvDlPG~ysl~~~s~ee~v--~~~~l~~~~~D-~ii~VvDa~~l~-------r~l~l~~ql 101 (156)
T PF02421_consen 41 IF---------KLGDQQVELVDLPGIYSLSSKSEEERV--ARDYLLSEKPD-LIIVVVDATNLE-------RNLYLTLQL 101 (156)
T ss_dssp EE---------EETTEEEEEEE----SSSSSSSHHHHH--HHHHHHHTSSS-EEEEEEEGGGHH-------HHHHHHHHH
T ss_pred EE---------EecCceEEEEECCCcccCCCCCcHHHH--HHHHHhhcCCC-EEEEECCCCCHH-------HHHHHHHHH
Confidence 00 001567999999994 7776654432 12223233333 355567887653 233344555
Q ss_pred HhhcCCeeeeecccccccch
Q 026486 162 VQLELPHVNILSKMDLVTNK 181 (238)
Q Consensus 162 ~~~~~p~~~vlsk~dll~~~ 181 (238)
..++.|.+-++||+|.++++
T Consensus 102 ~e~g~P~vvvlN~~D~a~~~ 121 (156)
T PF02421_consen 102 LELGIPVVVVLNKMDEAERK 121 (156)
T ss_dssp HHTTSSEEEEEETHHHHHHT
T ss_pred HHcCCCEEEEEeCHHHHHHc
Confidence 67899999999999999866
No 469
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.30 E-value=2.1e-05 Score=71.80 Aligned_cols=38 Identities=24% Similarity=0.401 Sum_probs=31.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~ 40 (238)
..++++|||||||||++..|++.+...+.+|.+...|+
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt 279 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDH 279 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCC
Confidence 46899999999999999999998865545677776654
No 470
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=98.30 E-value=6.2e-07 Score=89.97 Aligned_cols=87 Identities=13% Similarity=0.069 Sum_probs=64.0
Q ss_pred HHHHHcCCCCC-CchhhhHHhhhhhHH--HHHHHHHhccCCC--CEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEE
Q 026486 61 DVMEELGLGPN-GGLIYCMEHLEDNLD--DWLAEELDNYLDD--DYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVC 134 (238)
Q Consensus 61 ~~l~~~~l~~~-~~~~~~~~~~~~~~s--~~la~~l~~~~~p--~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~tvi 134 (238)
+.++.+||+.. ... ....++++.+ +.||++|.. +| +++||||||+ ||+.....++ ++++++++.|.|||
T Consensus 471 ~~L~~vGL~~l~l~r--~~~~LSgGE~QRv~LA~aL~~--~~~~~llILDEPtagLd~~~~~~L~-~~L~~L~~~G~TVI 545 (943)
T PRK00349 471 KFLVDVGLDYLTLSR--SAGTLSGGEAQRIRLATQIGS--GLTGVLYVLDEPSIGLHQRDNDRLI-ETLKHLRDLGNTLI 545 (943)
T ss_pred HHhhccccCCCCCCC--chhhCCHHHHHHHHHHHHHhh--CCCCcEEEecCCccCCCHHHHHHHH-HHHHHHHhCCCEEE
Confidence 36777888642 111 1345655543 899999998 76 9999999999 9999999999 99999987899998
Q ss_pred EEEecccccccchhHHHhhhHHH
Q 026486 135 AVYLLDSQFITDVTKFISGCMAS 157 (238)
Q Consensus 135 ~v~l~d~~~~~d~~~~~~~~l~~ 157 (238)
+|. |.+.... .++.++..
T Consensus 546 vVe----H~~~~i~-~aD~vi~L 563 (943)
T PRK00349 546 VVE----HDEDTIR-AADYIVDI 563 (943)
T ss_pred EEe----CCHHHHH-hCCEEEEe
Confidence 883 6655432 35555544
No 471
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.29 E-value=1.5e-05 Score=73.77 Aligned_cols=148 Identities=18% Similarity=0.211 Sum_probs=77.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCc-C-CCceEEEeeecCCCCCCCCCCCCChhhhhhHHHHHHHcCCCCCCchhhhHHh
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCE-T-VRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH 80 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~-~-~~G~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~ 80 (238)
-+++++||+|+||||++..|+..+. . .+.+|.+...|+.. .+ ..+ .+..+.+..++.-...
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r--~~------a~e--qL~~~a~~~~vp~~~~------- 284 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYR--IG------AVE--QLKTYAKIMGIPVEVV------- 284 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccH--HH------HHH--HHHHHHHHhCCceEcc-------
Confidence 3688999999999999999998775 3 34578887766521 00 011 1222333344432110
Q ss_pred hhhhHHHHHHHHHhccCCCCEEEEeCCCc--ccHHhHHHHHHHHHHHHHhCCCeEEEEEeccccc-ccchhHHHhhhHHH
Q 026486 81 LEDNLDDWLAEELDNYLDDDYLVFDCPGQ--IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQF-ITDVTKFISGCMAS 157 (238)
Q Consensus 81 ~~~~~s~~la~~l~~~~~p~~lilDEPt~--LD~~~~~~~~~~ll~~l~~~~~tvi~v~l~d~~~-~~d~~~~~~~~l~~ 157 (238)
... ..++.++..+.+.+++|+|.|+. .|......+. ++++.. .....+.+| +++.. -.+....+.
T Consensus 285 --~~~-~~l~~~l~~~~~~DlVlIDt~G~~~~d~~~~~~L~-~ll~~~-~~~~~~~LV--l~a~~~~~~l~~~~~----- 352 (424)
T PRK05703 285 --YDP-KELAKALEQLRDCDVILIDTAGRSQRDKRLIEELK-ALIEFS-GEPIDVYLV--LSATTKYEDLKDIYK----- 352 (424)
T ss_pred --CCH-HhHHHHHHHhCCCCEEEEeCCCCCCCCHHHHHHHH-HHHhcc-CCCCeEEEE--EECCCCHHHHHHHHH-----
Confidence 001 12233333333789999999995 7777665555 555521 122233333 22321 112222111
Q ss_pred HHHHHhhcCCeeeeecccccccchh
Q 026486 158 LSAMVQLELPHVNILSKMDLVTNKK 182 (238)
Q Consensus 158 ~~~~~~~~~p~~~vlsk~dll~~~~ 182 (238)
.+..-.+.--|++|.|--..++
T Consensus 353 ---~f~~~~~~~vI~TKlDet~~~G 374 (424)
T PRK05703 353 ---HFSRLPLDGLIFTKLDETSSLG 374 (424)
T ss_pred ---HhCCCCCCEEEEeccccccccc
Confidence 1111123347899999976654
No 472
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=98.29 E-value=5.7e-06 Score=65.79 Aligned_cols=21 Identities=29% Similarity=0.347 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHHhC
Q 026486 5 QLVIGPAGSGKSTYCSSLYRH 25 (238)
Q Consensus 5 v~IiGpnGSGKSTLl~~l~g~ 25 (238)
++|+|++|||||||++.+.+.
T Consensus 3 v~ivG~~~~GKStl~~~l~~~ 23 (170)
T cd01898 3 VGLVGLPNAGKSTLLSAISNA 23 (170)
T ss_pred eEEECCCCCCHHHHHHHHhcC
Confidence 689999999999999999863
No 473
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.29 E-value=7e-06 Score=68.30 Aligned_cols=156 Identities=16% Similarity=0.123 Sum_probs=79.3
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCCCCCCCCCCCChhhhhhHHHHHHHcCCCCCCchhhhHHhh
Q 026486 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (238)
Q Consensus 2 ~~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~~ 81 (238)
+.+++++||+|+||||.+.-|+..+...+.+|.+...|..+ . .-.+ ....+.+.+|+.-...... +..
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R--~------ga~e--QL~~~a~~l~vp~~~~~~~--~~~ 68 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYR--I------GAVE--QLKTYAEILGVPFYVARTE--SDP 68 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSS--T------HHHH--HHHHHHHHHTEEEEESSTT--SCH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCC--c------cHHH--HHHHHHHHhccccchhhcc--hhh
Confidence 35789999999999999988888877667778877766421 0 0112 1333444555432110000 000
Q ss_pred hhhHHHHHHHHHhccCCCCEEEEeCCCc--ccHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccchhHHHhhhHHHHH
Q 026486 82 EDNLDDWLAEELDNYLDDDYLVFDCPGQ--IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLS 159 (238)
Q Consensus 82 ~~~~s~~la~~l~~~~~p~~lilDEPt~--LD~~~~~~~~~~ll~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~ 159 (238)
..-.+.++...-.. +-+++++|.|+. -|.....++. ++++.. ....+++|- ++..-. ... . ...
T Consensus 69 ~~~~~~~l~~~~~~--~~D~vlIDT~Gr~~~d~~~~~el~-~~~~~~--~~~~~~LVl--sa~~~~--~~~-~----~~~ 134 (196)
T PF00448_consen 69 AEIAREALEKFRKK--GYDLVLIDTAGRSPRDEELLEELK-KLLEAL--NPDEVHLVL--SATMGQ--EDL-E----QAL 134 (196)
T ss_dssp HHHHHHHHHHHHHT--TSSEEEEEE-SSSSTHHHHHHHHH-HHHHHH--SSSEEEEEE--EGGGGG--HHH-H----HHH
T ss_pred HHHHHHHHHHHhhc--CCCEEEEecCCcchhhHHHHHHHH-HHhhhc--CCccceEEE--ecccCh--HHH-H----HHH
Confidence 00011222222223 568999999994 6666555554 666655 233444442 222111 111 1 111
Q ss_pred HHHhhcCCeeeeecccccccchhh
Q 026486 160 AMVQLELPHVNILSKMDLVTNKKE 183 (238)
Q Consensus 160 ~~~~~~~p~~~vlsk~dll~~~~~ 183 (238)
.....-.+.--|++|.|--.+.+.
T Consensus 135 ~~~~~~~~~~lIlTKlDet~~~G~ 158 (196)
T PF00448_consen 135 AFYEAFGIDGLILTKLDETARLGA 158 (196)
T ss_dssp HHHHHSSTCEEEEESTTSSSTTHH
T ss_pred HHhhcccCceEEEEeecCCCCccc
Confidence 111222244578999999877653
No 474
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=98.29 E-value=4.6e-06 Score=64.24 Aligned_cols=77 Identities=17% Similarity=0.185 Sum_probs=40.8
Q ss_pred CCCEEEEeCCCcccHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccchhHHHhhhHHHHHHHHhhcCCeeeeeccccc
Q 026486 98 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDL 177 (238)
Q Consensus 98 ~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~~~p~~~vlsk~dl 177 (238)
..++.++|.|+.-+..............+.+.--.++ +++|...-....... ..........|.+-|+||+|+
T Consensus 44 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il--~v~~~~~~~~~~~~~-----~~~~~~~~~~~~ivv~nK~D~ 116 (163)
T cd00880 44 LGPVVLIDTPGIDEAGGLGREREELARRVLERADLIL--FVVDADLRADEEEEK-----LLELLRERGKPVLLVLNKIDL 116 (163)
T ss_pred CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEE--EEEeCCCCCCHHHHH-----HHHHHHhcCCeEEEEEEcccc
Confidence 4579999999974443333221133333333211222 234444433222221 223334568899999999999
Q ss_pred ccch
Q 026486 178 VTNK 181 (238)
Q Consensus 178 l~~~ 181 (238)
....
T Consensus 117 ~~~~ 120 (163)
T cd00880 117 LPEE 120 (163)
T ss_pred CChh
Confidence 8654
No 475
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.28 E-value=6.2e-07 Score=74.92 Aligned_cols=35 Identities=26% Similarity=0.364 Sum_probs=28.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeec
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD 39 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d 39 (238)
.+++|+||||||||||++.|++++++ +.+.+...|
T Consensus 7 ~vi~I~G~sGsGKSTl~~~l~~~l~~--~~~~~i~~D 41 (207)
T TIGR00235 7 IIIGIGGGSGSGKTTVARKIYEQLGK--LEIVIISQD 41 (207)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcc--cCCeEeccc
Confidence 68999999999999999999999876 444444443
No 476
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.28 E-value=2.3e-06 Score=79.09 Aligned_cols=98 Identities=13% Similarity=0.182 Sum_probs=58.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCCCCCCCCCCCChhhhhhHHHHHHHcCCCCCCchhhhHHhhh-
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE- 82 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~~~- 82 (238)
.++|+|+||+|||||++.+++..+++.|.+...|... ..+++. +++.+..-++...--.....+...
T Consensus 158 ri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGerg----------~ev~e~--~~~~l~~~gl~~tvvv~~tsd~s~~ 225 (432)
T PRK06793 158 KIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERG----------REVKDF--IRKELGEEGMRKSVVVVATSDESHL 225 (432)
T ss_pred EEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCCc----------ccHHHH--HHHHhhhcccceeEEEEECCCCCHH
Confidence 4689999999999999999999999999887776543 123332 223333333321100000001110
Q ss_pred hhHH-----HHHHHHHhccCCCCEEEEeCCCc-ccHH
Q 026486 83 DNLD-----DWLAEELDNYLDDDYLVFDCPGQ-IELF 113 (238)
Q Consensus 83 ~~~s-----~~la~~l~~~~~p~~lilDEPt~-LD~~ 113 (238)
...+ ..+|+-+....++-++++|+||. .|..
T Consensus 226 ~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~ 262 (432)
T PRK06793 226 MQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADAR 262 (432)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHHHHH
Confidence 0111 34454444334788999999998 8886
No 477
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.27 E-value=6.7e-07 Score=89.59 Aligned_cols=87 Identities=14% Similarity=0.074 Sum_probs=63.1
Q ss_pred HHHHHcCCCCC-CchhhhHHhhhhhHH--HHHHHHHhccCCC--CEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEE
Q 026486 61 DVMEELGLGPN-GGLIYCMEHLEDNLD--DWLAEELDNYLDD--DYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVC 134 (238)
Q Consensus 61 ~~l~~~~l~~~-~~~~~~~~~~~~~~s--~~la~~l~~~~~p--~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~tvi 134 (238)
+.+..+||+.. ... ....++++.+ +.||+++.. +| +++||||||+ ||+.....++ +++++++++|.+||
T Consensus 469 ~~L~~vgL~~l~l~r--~~~tLSGGE~QRv~LA~aL~~--~~~~~llILDEPtagLD~~~~~~L~-~~L~~L~~~G~TVI 543 (924)
T TIGR00630 469 GFLIDVGLDYLTLSR--AAGTLSGGEAQRIRLATQIGS--GLTGVLYVLDEPSIGLHQRDNERLI-NTLKRLRDLGNTVI 543 (924)
T ss_pred HhHhhccccccccCC--CcCcCCHHHHHHHHHHHHHhh--CCCCcEEEEcCCccCCCHHHHHHHH-HHHHHHHhCCCEEE
Confidence 34666777642 111 1234555543 899999998 65 8999999999 9999999999 99999987899998
Q ss_pred EEEecccccccchhHHHhhhHHH
Q 026486 135 AVYLLDSQFITDVTKFISGCMAS 157 (238)
Q Consensus 135 ~v~l~d~~~~~d~~~~~~~~l~~ 157 (238)
+|. |...... +++.++..
T Consensus 544 vVe----Hd~~~i~-~aD~vi~L 561 (924)
T TIGR00630 544 VVE----HDEETIR-AADYVIDI 561 (924)
T ss_pred EEE----CCHHHHh-hCCEEEEe
Confidence 884 6655433 56655554
No 478
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.26 E-value=2.5e-05 Score=71.40 Aligned_cols=150 Identities=17% Similarity=0.220 Sum_probs=77.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcC----CCceEEEeeecCCCCCCCCCCCCChhhhhhHHHHHHHcCCCCCCchhhhH
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCET----VRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCM 78 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~----~~G~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~ 78 (238)
.+++++||+|+||||.+.-++..+.. .+.+|.+...|+.. +...-....+.+.+|+.-...
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R----------~aa~eQL~~~a~~lgvpv~~~----- 239 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYR----------IGAKKQIQTYGDIMGIPVKAI----- 239 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCcc----------HHHHHHHHHHhhcCCcceEee-----
Confidence 47889999999999999999987653 34578887766421 111001233333444421110
Q ss_pred HhhhhhHHHHHHHHHhccCCCCEEEEeCCCc--ccHHhHHHHHHHHHHHHHhCCCeEEEEEeccccc-ccchhHHHhhhH
Q 026486 79 EHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ--IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQF-ITDVTKFISGCM 155 (238)
Q Consensus 79 ~~~~~~~s~~la~~l~~~~~p~~lilDEPt~--LD~~~~~~~~~~ll~~l~~~~~tvi~v~l~d~~~-~~d~~~~~~~~l 155 (238)
... ..+..++....+.+++|+|+|+. -|.....++. +++..... ...+++| +|+.. ..+....+
T Consensus 240 ----~~~-~~l~~~L~~~~~~DlVLIDTaGr~~~~~~~l~el~-~~l~~~~~-~~e~~LV--lsat~~~~~~~~~~---- 306 (388)
T PRK12723 240 ----ESF-KDLKEEITQSKDFDLVLVDTIGKSPKDFMKLAEMK-ELLNACGR-DAEFHLA--VSSTTKTSDVKEIF---- 306 (388)
T ss_pred ----CcH-HHHHHHHHHhCCCCEEEEcCCCCCccCHHHHHHHH-HHHHhcCC-CCeEEEE--EcCCCCHHHHHHHH----
Confidence 011 22222222222789999999995 4554333333 44443321 2233344 22221 11111111
Q ss_pred HHHHHHHhhcCCeeeeecccccccchhhh
Q 026486 156 ASLSAMVQLELPHVNILSKMDLVTNKKEI 184 (238)
Q Consensus 156 ~~~~~~~~~~~p~~~vlsk~dll~~~~~l 184 (238)
..+..-.+.--|++|.|--.+.+.+
T Consensus 307 ----~~~~~~~~~~~I~TKlDet~~~G~~ 331 (388)
T PRK12723 307 ----HQFSPFSYKTVIFTKLDETTCVGNL 331 (388)
T ss_pred ----HHhcCCCCCEEEEEeccCCCcchHH
Confidence 1111123455889999998776533
No 479
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.24 E-value=5.8e-05 Score=69.76 Aligned_cols=38 Identities=26% Similarity=0.335 Sum_probs=32.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~ 40 (238)
.+++++|++||||||++.-|+.++...+.+|.+...|+
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~ 138 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADT 138 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcc
Confidence 67899999999999999999998876555888887765
No 480
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.23 E-value=5.3e-06 Score=83.06 Aligned_cols=70 Identities=13% Similarity=0.169 Sum_probs=48.8
Q ss_pred HHHHHHhccCCCCEEEEeCCCc-c-cHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccchhH--HHhhhHHHHHHHHh
Q 026486 88 WLAEELDNYLDDDYLVFDCPGQ-I-ELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTK--FISGCMASLSAMVQ 163 (238)
Q Consensus 88 ~la~~l~~~~~p~~lilDEPt~-L-D~~~~~~~~~~ll~~l~~~~~tvi~v~l~d~~~~~d~~~--~~~~~l~~~~~~~~ 163 (238)
++++++.. +|+++++|||.. + |+.....+. +.++.+++.|.++++++ |...+... ....++-.+...+.
T Consensus 679 ri~~~l~~--~p~illlDE~w~~L~d~~~~~~i~-~~lk~~RK~g~~vil~T----Qs~~d~~~s~i~~~ilen~~t~I~ 751 (852)
T PRK13891 679 RIERALKG--QPAVIILDEAWLMLGHPAFRAKIR-EWLKVLRKANCLVLMAT----QSLSDAANSGILDVIVESTATKIF 751 (852)
T ss_pred HHHHHhcC--CCCEEEEeCchhhcCCHHHHHHHH-HHHHHHHhcCCEEEEEe----CCHHHHhhCchHHHHHHcCCccee
Confidence 35667767 999999999998 8 677777777 88898887787777773 66655543 33444444444444
Q ss_pred h
Q 026486 164 L 164 (238)
Q Consensus 164 ~ 164 (238)
+
T Consensus 752 L 752 (852)
T PRK13891 752 L 752 (852)
T ss_pred c
Confidence 4
No 481
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.22 E-value=1.6e-06 Score=71.19 Aligned_cols=35 Identities=29% Similarity=0.520 Sum_probs=28.3
Q ss_pred CCeeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeee
Q 026486 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL 38 (238)
Q Consensus 1 ~~~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~ 38 (238)
|.-.++|+|||||||||+++.|++...+ .+.+.+.
T Consensus 1 ~g~~i~l~G~sGsGKsTl~~~l~~~~~~---~~~~~~~ 35 (186)
T PRK10078 1 MGKLIWLMGPSGSGKDSLLAALRQREQT---QLLVAHR 35 (186)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCCC---eEEEcCE
Confidence 5667899999999999999999998765 3555443
No 482
>PRK05480 uridine/cytidine kinase; Provisional
Probab=98.19 E-value=1.8e-06 Score=72.02 Aligned_cols=37 Identities=24% Similarity=0.415 Sum_probs=30.8
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecC
Q 026486 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (238)
Q Consensus 2 ~~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~ 40 (238)
+.+++|.|++|||||||++.|++.+. .+.+.+.+.|.
T Consensus 6 ~~iI~I~G~sGsGKTTl~~~l~~~l~--~~~~~~i~~D~ 42 (209)
T PRK05480 6 PIIIGIAGGSGSGKTTVASTIYEELG--DESIAVIPQDS 42 (209)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhC--CCceEEEeCCc
Confidence 47899999999999999999999883 45677766654
No 483
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=98.18 E-value=7.7e-06 Score=71.77 Aligned_cols=38 Identities=21% Similarity=0.337 Sum_probs=31.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCC-C-ceEEEeeecC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETV-R-RTMHIVNLDP 40 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~-~-G~i~i~~~d~ 40 (238)
.+++++||+|+||||++..|+..+... + .+|.+...|+
T Consensus 195 ~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 478999999999999999999988665 3 4788887664
No 484
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.18 E-value=0.00018 Score=58.62 Aligned_cols=22 Identities=23% Similarity=0.246 Sum_probs=20.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHh
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYR 24 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g 24 (238)
.-++|+|++|+|||||++.+.+
T Consensus 25 ~~v~ivG~~~~GKSsli~~l~~ 46 (196)
T PRK00454 25 PEIAFAGRSNVGKSSLINALTN 46 (196)
T ss_pred CEEEEEcCCCCCHHHHHHHHhC
Confidence 3589999999999999999997
No 485
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.18 E-value=2.3e-05 Score=73.00 Aligned_cols=98 Identities=15% Similarity=0.222 Sum_probs=57.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCC--CceEEEeeecCCCCCCCCCCCCChhhhhhHHHHHHHcCCCCCCchhhhHHhh
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETV--RRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~--~G~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~~ 81 (238)
.+.|.||+|+|||+|+++++..+... +.++.+.+ ..+. ..++...+.-+
T Consensus 132 ~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~---------------~~~f--~~~~~~~~~~~------------ 182 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT---------------SEKF--LNDLVDSMKEG------------ 182 (440)
T ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE---------------HHHH--HHHHHHHHhcc------------
Confidence 46899999999999999999865321 12333321 1111 12222221100
Q ss_pred hhhHHHHHHHHHhccCCCCEEEEeCCCc-ccHH-hHHHHHHHHHHHHHhCCCeEEEE
Q 026486 82 EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELF-THVPVLRNFVDHLKSRNFNVCAV 136 (238)
Q Consensus 82 ~~~~s~~la~~l~~~~~p~~lilDEPt~-LD~~-~~~~~~~~ll~~l~~~~~tvi~v 136 (238)
.. ..+...+.. ++++|++|||.. ++.. ++.+++ .++..+.+.|+.++++
T Consensus 183 --~~-~~f~~~~~~--~~dvLlIDDi~~l~~~~~~q~elf-~~~n~l~~~~k~iIit 233 (440)
T PRK14088 183 --KL-NEFREKYRK--KVDVLLIDDVQFLIGKTGVQTELF-HTFNELHDSGKQIVIC 233 (440)
T ss_pred --cH-HHHHHHHHh--cCCEEEEechhhhcCcHHHHHHHH-HHHHHHHHcCCeEEEE
Confidence 01 112223334 799999999998 6654 455666 7888887777666554
No 486
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.18 E-value=6.4e-06 Score=73.84 Aligned_cols=41 Identities=24% Similarity=0.379 Sum_probs=37.4
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC
Q 026486 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA 42 (238)
Q Consensus 2 ~~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~ 42 (238)
.++++|.|++|||||||+..+...++..+.+|.+.+.||..
T Consensus 56 ~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s 96 (332)
T PRK09435 56 ALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSS 96 (332)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCc
Confidence 37899999999999999999999998888899999999865
No 487
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=98.17 E-value=8.1e-06 Score=81.40 Aligned_cols=52 Identities=15% Similarity=0.221 Sum_probs=39.9
Q ss_pred HHHHhccCCCCEEEEeCCCc-c-cHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccchh
Q 026486 90 AEELDNYLDDDYLVFDCPGQ-I-ELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVT 148 (238)
Q Consensus 90 a~~l~~~~~p~~lilDEPt~-L-D~~~~~~~~~~ll~~l~~~~~tvi~v~l~d~~~~~d~~ 148 (238)
.+.+.. +|.++++|||.. | |+.....+. +.++.+++.|.+++++ +|...+..
T Consensus 646 ~~~l~~--~p~illlDE~~~~L~d~~~~~~i~-~~lk~~RK~~~~vil~----Tq~~~d~~ 699 (818)
T PRK13830 646 EKRLTG--APSLIILDEAWLMLGHPVFRDKIR-EWLKVLRKANCAVVLA----TQSISDAE 699 (818)
T ss_pred HHhcCC--CCcEEEEECchhhcCCHHHHHHHH-HHHHHHHHcCCEEEEE----eCCHHHHh
Confidence 333455 999999999998 9 688877777 9999988878887777 46665543
No 488
>PLN02796 D-glycerate 3-kinase
Probab=98.16 E-value=1.7e-06 Score=77.51 Aligned_cols=39 Identities=18% Similarity=0.200 Sum_probs=32.8
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCCcCC---CceEEEeeecC
Q 026486 2 GYAQLVIGPAGSGKSTYCSSLYRHCETV---RRTMHIVNLDP 40 (238)
Q Consensus 2 ~~~v~IiGpnGSGKSTLl~~l~g~l~~~---~G~i~i~~~d~ 40 (238)
+++++|.|++|||||||++.|.+++++. .|.|.+++...
T Consensus 100 pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYL 141 (347)
T PLN02796 100 PLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYL 141 (347)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCccc
Confidence 3689999999999999999999999875 46677777554
No 489
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=98.16 E-value=4.9e-05 Score=62.74 Aligned_cols=95 Identities=15% Similarity=0.175 Sum_probs=47.9
Q ss_pred CCCEEEEeCCCcccHHh-HHHHHHHHHHHHH--hCCCeEEEEEecccccccchhHHHhhhHHHHHHHHhhcCCeeeeecc
Q 026486 98 DDDYLVFDCPGQIELFT-HVPVLRNFVDHLK--SRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSK 174 (238)
Q Consensus 98 ~p~~lilDEPt~LD~~~-~~~~~~~ll~~l~--~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~~~p~~~vlsk 174 (238)
+..+.++|.|+-.|... ...+..++.+.+. ..|..+ ++++++.....+....+-..+...-+. ..-.+.+-|+++
T Consensus 48 ~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~-illVi~~~~~t~~d~~~l~~l~~~fg~-~~~~~~ivv~T~ 125 (196)
T cd01852 48 GRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPHA-FLLVVPLGRFTEEEEQAVETLQELFGE-KVLDHTIVLFTR 125 (196)
T ss_pred CeEEEEEECcCCCCccCChHHHHHHHHHHHHhcCCCCEE-EEEEEECCCcCHHHHHHHHHHHHHhCh-HhHhcEEEEEEC
Confidence 56799999999644422 2222323333332 234444 344556555433222211111111110 112467789999
Q ss_pred cccccchhhhhhhcccCHHHH
Q 026486 175 MDLVTNKKEIEDYLNPESQFL 195 (238)
Q Consensus 175 ~dll~~~~~l~~~~~~~~~~l 195 (238)
+|.+... .++.++......|
T Consensus 126 ~d~l~~~-~~~~~~~~~~~~l 145 (196)
T cd01852 126 GDDLEGG-TLEDYLENSCEAL 145 (196)
T ss_pred ccccCCC-cHHHHHHhccHHH
Confidence 9999766 6666665433344
No 490
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.15 E-value=2.9e-06 Score=76.93 Aligned_cols=142 Identities=20% Similarity=0.192 Sum_probs=70.9
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCCCCCCC----CCCCChhh-------hhhHHHHHHHcCCCC
Q 026486 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDY----PVAMDIRE-------LISLEDVMEELGLGP 70 (238)
Q Consensus 2 ~~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~----~~~~~i~~-------~i~~~~~l~~~~l~~ 70 (238)
+.-+||+|.+|||||||+++|-|+-.-+.|.....=.....+..+| .|++.++| ....+++++++++..
T Consensus 35 ~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~~~~ 114 (376)
T PF05049_consen 35 PLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFPNVTLWDLPGIGTPNFPPEEYLKEVKFYR 114 (376)
T ss_dssp -EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-TTEEEEEE--GGGSS--HHHHHHHTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCCCCeEEeCCCCCCCCCCHHHHHHHccccc
Confidence 3568999999999999999999987666554332111111222233 23333333 234888899888776
Q ss_pred CCchhh-hHHhhhhhHHHHHHHHHhccCCCCEEEE---eC---------CCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 026486 71 NGGLIY-CMEHLEDNLDDWLAEELDNYLDDDYLVF---DC---------PGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (238)
Q Consensus 71 ~~~~~~-~~~~~~~~~s~~la~~l~~~~~p~~lil---DE---------Pt~-LD~~~~~~~~~~ll~~l~~~~~tvi~v 136 (238)
..-.+. +.+.+..+- ++||+++....+|=|++- |+ |.. -+...-+++-.+..+.|++.|..---|
T Consensus 115 yD~fiii~s~rf~~nd-v~La~~i~~~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~gv~~P~V 193 (376)
T PF05049_consen 115 YDFFIIISSERFTEND-VQLAKEIQRMGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKAGVSEPQV 193 (376)
T ss_dssp -SEEEEEESSS--HHH-HHHHHHHHHTT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCTT-SS--E
T ss_pred cCEEEEEeCCCCchhh-HHHHHHHHHcCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHcCCCcCce
Confidence 432111 112222222 889998887534434432 22 433 222223444445677777666543345
Q ss_pred Eecccccc
Q 026486 137 YLLDSQFI 144 (238)
Q Consensus 137 ~l~d~~~~ 144 (238)
|++++...
T Consensus 194 FLVS~~dl 201 (376)
T PF05049_consen 194 FLVSSFDL 201 (376)
T ss_dssp EEB-TTTT
T ss_pred EEEeCCCc
Confidence 55655543
No 491
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.15 E-value=1.9e-06 Score=58.25 Aligned_cols=27 Identities=33% Similarity=0.434 Sum_probs=23.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCC
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVR 30 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~ 30 (238)
.+.|.|||||||||++.++.=.+-+..
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L~~~~ 51 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVLYGNT 51 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHcCCc
Confidence 588999999999999999988776543
No 492
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=98.14 E-value=1.2e-05 Score=80.42 Aligned_cols=111 Identities=15% Similarity=0.201 Sum_probs=60.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCC-cCCCceEEEeeecCCCC-CCCCCCCCChhhhhhHHHHHHHcCCCCCCchhhhHHhh
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHC-ETVRRTMHIVNLDPAAE-NFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l-~~~~G~i~i~~~d~~~~-~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~~ 81 (238)
++.|.|||++||||++|.++-.. -++-|... |+.. .+++ ++.++-++|-..+ .......+
T Consensus 609 ~~iiTGpN~~GKSt~lr~v~l~~ilAq~G~~V-----Pa~~a~i~~-----------~d~I~triga~d~--i~~g~STF 670 (854)
T PRK05399 609 LLLITGPNMAGKSTYMRQVALIVLLAQIGSFV-----PAESARIGI-----------VDRIFTRIGASDD--LASGRSTF 670 (854)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHHHhcCCce-----eccceEecc-----------cCeeeeccCcccc--cccCcccH
Confidence 57899999999999999986542 12223211 1110 1111 1112222232221 11111233
Q ss_pred hhhHHHHHHHHHhccCCCCEEEEeCC---Cc-ccHHhHHHHHHHHHHHHHhC-CCeEEEE
Q 026486 82 EDNLDDWLAEELDNYLDDDYLVFDCP---GQ-IELFTHVPVLRNFVDHLKSR-NFNVCAV 136 (238)
Q Consensus 82 ~~~~s~~la~~l~~~~~p~~lilDEP---t~-LD~~~~~~~~~~ll~~l~~~-~~tvi~v 136 (238)
...+ ..++.++....++.++|+||| |+ .|-. .+...+++.+.+. +.+++++
T Consensus 671 ~~E~-~~~~~il~~at~~sLvllDE~GrGTs~~dg~---aia~aile~l~~~~~~~~l~a 726 (854)
T PRK05399 671 MVEM-TETANILNNATERSLVLLDEIGRGTSTYDGL---SIAWAVAEYLHDKIGAKTLFA 726 (854)
T ss_pred HHHH-HHHHHHHHhCCCCcEEEEecCCCCCCcchhH---HHHHHHHHHHHhcCCceEEEE
Confidence 3344 555666554447899999999 55 6633 3343788888765 4556555
No 493
>PRK09866 hypothetical protein; Provisional
Probab=98.14 E-value=3.9e-05 Score=73.66 Aligned_cols=24 Identities=21% Similarity=0.282 Sum_probs=22.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l 26 (238)
++++|+|++|+|||||++++.|..
T Consensus 70 ~~valvG~sgaGKSTLiNaL~G~~ 93 (741)
T PRK09866 70 MVLAIVGTMKAGKSTTINAIVGTE 93 (741)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCc
Confidence 678999999999999999999964
No 494
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.14 E-value=2e-06 Score=75.10 Aligned_cols=32 Identities=28% Similarity=0.215 Sum_probs=28.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEE
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI 35 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i 35 (238)
+++|.|+||||||||++.|++++++.++.+..
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~ 32 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVIC 32 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceEEEE
Confidence 47999999999999999999999988775544
No 495
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=98.13 E-value=5.5e-06 Score=65.21 Aligned_cols=23 Identities=30% Similarity=0.563 Sum_probs=19.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~ 25 (238)
|-++++|++|||||||++.+.+.
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~ 23 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYD 23 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhC
Confidence 35789999999999999999843
No 496
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=98.13 E-value=2.6e-05 Score=64.44 Aligned_cols=23 Identities=26% Similarity=0.310 Sum_probs=21.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~ 25 (238)
+.++|+|++|||||||++.+.+-
T Consensus 42 ~~I~iiG~~g~GKStLl~~l~~~ 64 (204)
T cd01878 42 PTVALVGYTNAGKSTLFNALTGA 64 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHhcc
Confidence 57899999999999999999885
No 497
>PLN02318 phosphoribulokinase/uridine kinase
Probab=98.13 E-value=3.9e-06 Score=79.89 Aligned_cols=38 Identities=18% Similarity=0.299 Sum_probs=33.1
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecC
Q 026486 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (238)
Q Consensus 2 ~~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~ 40 (238)
+++++|.||||||||||++.|++.+ +..|.|.++|...
T Consensus 65 riIIGIaGpSGSGKTTLAk~LaglL-p~vgvIsmDdy~~ 102 (656)
T PLN02318 65 IILVGVAGPSGAGKTVFTEKVLNFM-PSIAVISMDNYND 102 (656)
T ss_pred eEEEEEECCCCCcHHHHHHHHHhhC-CCcEEEEEcceec
Confidence 3789999999999999999999997 5678888888653
No 498
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.12 E-value=2.7e-06 Score=65.09 Aligned_cols=111 Identities=26% Similarity=0.350 Sum_probs=62.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCC-----CceEEEeeecCCCCCCCCCCCCChhhhhhHHHHHHHcCCCCCCchhhh
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETV-----RRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYC 77 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~-----~G~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~ 77 (238)
-++.|.||+|+||||+++.+...+... ...+.+.+... ..+.++ -..++.+.++....... .
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~--~~~~i~~~l~~~~~~~~--~ 71 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPS---------SRTPRD--FAQEILEALGLPLKSRQ--T 71 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHH---------HSSHHH--HHHHHHHHHT-SSSSTS---
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCC---------CCCHHH--HHHHHHHHhCccccccC--C
Confidence 357899999999999999999987542 23333322211 112222 26677888887765410 0
Q ss_pred HHhhhhhHHHHHHHHHhccCCC-CEEEEeCCCcccHHhHHHHHHHHHHHHHh-CCCeEEEE
Q 026486 78 MEHLEDNLDDWLAEELDNYLDD-DYLVFDCPGQIELFTHVPVLRNFVDHLKS-RNFNVCAV 136 (238)
Q Consensus 78 ~~~~~~~~s~~la~~l~~~~~p-~~lilDEPt~LD~~~~~~~~~~ll~~l~~-~~~tvi~v 136 (238)
...+ . ..+.+.+.. .. .++++||--.+. ....+ +.++.+.+ .+.+++++
T Consensus 72 ~~~l---~-~~~~~~l~~--~~~~~lviDe~~~l~---~~~~l-~~l~~l~~~~~~~vvl~ 122 (131)
T PF13401_consen 72 SDEL---R-SLLIDALDR--RRVVLLVIDEADHLF---SDEFL-EFLRSLLNESNIKVVLV 122 (131)
T ss_dssp HHHH---H-HHHHHHHHH--CTEEEEEEETTHHHH---THHHH-HHHHHHTCSCBEEEEEE
T ss_pred HHHH---H-HHHHHHHHh--cCCeEEEEeChHhcC---CHHHH-HHHHHHHhCCCCeEEEE
Confidence 1111 1 444555555 44 499999988764 25666 66666654 34444444
No 499
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=98.11 E-value=1.9e-05 Score=67.48 Aligned_cols=50 Identities=14% Similarity=0.153 Sum_probs=33.7
Q ss_pred HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC-CCeEEEE
Q 026486 87 DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFNVCAV 136 (238)
Q Consensus 87 ~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~~tvi~v 136 (238)
..++..+....+..++|+||++. -++.....+...+++.|.++ +..++++
T Consensus 111 ~~~~~il~~~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~ 162 (235)
T PF00488_consen 111 KRLSSILRNATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIA 162 (235)
T ss_dssp HHHHHHHHH--TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEE
T ss_pred HHHHhhhhhcccceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEE
Confidence 34444443222667999999997 88888888877899999873 5555444
No 500
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.10 E-value=0.0001 Score=64.36 Aligned_cols=151 Identities=17% Similarity=0.282 Sum_probs=77.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCCCCCCCCCCCChhhhhhHHHHHHHcCCCCCCchhhhHHhhhh
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLED 83 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~~~~ 83 (238)
.++++||||+||||+++.+++.+...+.++.+...|+.. ++. +. ......+..++.-... .-..
T Consensus 77 ~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~r--i~~-----~~---ql~~~~~~~~~~~~~~------~~~~ 140 (270)
T PRK06731 77 TIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR--IGT-----VQ---QLQDYVKTIGFEVIAV------RDEA 140 (270)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCC--HHH-----HH---HHHHHhhhcCceEEec------CCHH
Confidence 689999999999999999999876555566666555321 110 11 1222333333321110 0001
Q ss_pred hHHHHHHHHHhccCCCCEEEEeCCCc--ccHHhHHHHHHHHHHHHHhCCCeEEEEEeccccc-ccchhHHHhhhHHHHHH
Q 026486 84 NLDDWLAEELDNYLDDDYLVFDCPGQ--IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQF-ITDVTKFISGCMASLSA 160 (238)
Q Consensus 84 ~~s~~la~~l~~~~~p~~lilDEPt~--LD~~~~~~~~~~ll~~l~~~~~tvi~v~l~d~~~-~~d~~~~~~~~l~~~~~ 160 (238)
.+..++. .+....+.+++|+|.|+. -|.....++. ++++.. +.. .+++| +|+.. -.+....+.
T Consensus 141 ~l~~~l~-~l~~~~~~D~ViIDt~Gr~~~~~~~l~el~-~~~~~~-~~~-~~~LV--l~a~~~~~d~~~~~~-------- 206 (270)
T PRK06731 141 AMTRALT-YFKEEARVDYILIDTAGKNYRASETVEEMI-ETMGQV-EPD-YICLT--LSASMKSKDMIEIIT-------- 206 (270)
T ss_pred HHHHHHH-HHHhcCCCCEEEEECCCCCcCCHHHHHHHH-HHHhhh-CCC-eEEEE--EcCccCHHHHHHHHH--------
Confidence 1212222 222211579999999996 4665555544 444433 222 23333 33322 222222222
Q ss_pred HHhhcCCeeeeecccccccchhhh
Q 026486 161 MVQLELPHVNILSKMDLVTNKKEI 184 (238)
Q Consensus 161 ~~~~~~p~~~vlsk~dll~~~~~l 184 (238)
.+..-.+.--|++|.|--.+.+.+
T Consensus 207 ~f~~~~~~~~I~TKlDet~~~G~~ 230 (270)
T PRK06731 207 NFKDIHIDGIVFTKFDETASSGEL 230 (270)
T ss_pred HhCCCCCCEEEEEeecCCCCccHH
Confidence 122234455789999998776533
Done!