Query 026486
Match_columns 238
No_of_seqs 363 out of 3269
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 14:42:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026486.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026486hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gfo_A Cobalt import ATP-bindi 100.0 5.1E-30 1.7E-34 222.4 4.3 160 3-171 35-231 (275)
2 3tui_C Methionine import ATP-b 100.0 5E-29 1.7E-33 223.4 9.4 163 3-174 55-254 (366)
3 3tif_A Uncharacterized ABC tra 100.0 1.8E-28 6E-33 208.1 9.2 147 3-158 32-219 (235)
4 2onk_A Molybdate/tungstate ABC 100.0 1.3E-28 4.5E-33 209.6 8.4 150 4-162 26-205 (240)
5 3fvq_A Fe(3+) IONS import ATP- 99.9 2.9E-28 1E-32 218.2 9.3 157 3-168 31-223 (359)
6 2pcj_A ABC transporter, lipopr 99.9 4.3E-28 1.5E-32 204.3 9.8 142 4-155 32-210 (224)
7 2olj_A Amino acid ABC transpor 99.9 3.5E-28 1.2E-32 209.6 9.4 147 3-158 51-233 (263)
8 3rlf_A Maltose/maltodextrin im 99.9 2.5E-28 8.6E-33 220.1 8.8 157 3-168 30-218 (381)
9 1b0u_A Histidine permease; ABC 99.9 2.6E-28 8.8E-33 210.3 8.2 149 3-160 33-229 (262)
10 1vpl_A ABC transporter, ATP-bi 99.9 5.5E-28 1.9E-32 207.6 8.5 145 3-156 42-218 (256)
11 4g1u_C Hemin import ATP-bindin 99.9 7.6E-28 2.6E-32 207.8 8.6 158 3-167 38-231 (266)
12 1z47_A CYSA, putative ABC-tran 99.9 8.1E-28 2.8E-32 215.2 8.6 151 4-163 43-225 (355)
13 2yyz_A Sugar ABC transporter, 99.9 1.1E-27 3.9E-32 214.6 9.3 151 3-162 30-212 (359)
14 2it1_A 362AA long hypothetical 99.9 1.4E-27 4.7E-32 214.3 9.5 153 3-164 30-214 (362)
15 1ji0_A ABC transporter; ATP bi 99.9 6.9E-28 2.4E-32 205.0 7.1 146 3-157 33-212 (240)
16 1g6h_A High-affinity branched- 99.9 1.6E-27 5.4E-32 204.7 9.1 147 3-158 34-227 (257)
17 3d31_A Sulfate/molybdate ABC t 99.9 1.8E-27 6.1E-32 212.6 9.1 151 3-162 27-206 (348)
18 1v43_A Sugar-binding transport 99.9 1.7E-27 5.8E-32 214.4 7.3 152 3-163 38-221 (372)
19 1g29_1 MALK, maltose transport 99.9 2.5E-27 8.7E-32 213.4 7.9 152 4-164 31-220 (372)
20 1sgw_A Putative ABC transporte 99.9 9.3E-27 3.2E-31 195.0 10.7 142 4-155 37-204 (214)
21 2yz2_A Putative ABC transporte 99.9 1.7E-27 5.8E-32 205.6 6.2 150 3-161 34-215 (266)
22 1oxx_K GLCV, glucose, ABC tran 99.9 1.8E-27 6.2E-32 213.0 6.5 151 3-162 32-219 (353)
23 2ihy_A ABC transporter, ATP-bi 99.9 1.2E-27 4.1E-32 207.9 3.3 145 4-157 49-236 (279)
24 2qi9_C Vitamin B12 import ATP- 99.9 5.2E-27 1.8E-31 200.7 6.7 143 4-156 28-205 (249)
25 2d2e_A SUFC protein; ABC-ATPas 99.9 1.5E-26 5E-31 197.9 7.1 139 3-150 30-209 (250)
26 2ff7_A Alpha-hemolysin translo 99.9 2.6E-26 8.9E-31 196.1 6.2 137 3-147 36-207 (247)
27 2zu0_C Probable ATP-dependent 99.9 5.5E-26 1.9E-30 196.2 7.4 145 3-155 47-236 (267)
28 1mv5_A LMRA, multidrug resista 99.9 4.7E-26 1.6E-30 194.0 5.9 136 3-146 29-200 (243)
29 2nq2_C Hypothetical ABC transp 99.9 3.6E-25 1.2E-29 189.7 10.9 142 4-156 33-201 (253)
30 2ixe_A Antigen peptide transpo 99.9 7.1E-26 2.4E-30 195.9 6.0 134 4-146 47-219 (271)
31 2pjz_A Hypothetical protein ST 99.9 1E-25 3.4E-30 194.2 5.9 146 4-162 32-204 (263)
32 3nh6_A ATP-binding cassette SU 99.9 4.2E-25 1.4E-29 194.1 6.5 152 3-163 81-267 (306)
33 2ghi_A Transport protein; mult 99.9 1.4E-24 4.9E-29 186.7 7.0 135 3-146 47-216 (260)
34 2cbz_A Multidrug resistance-as 99.9 1.6E-24 5.5E-29 183.9 3.9 142 4-155 33-199 (237)
35 2pze_A Cystic fibrosis transme 99.9 1.3E-24 4.6E-29 183.4 3.2 134 4-146 36-192 (229)
36 3ozx_A RNAse L inhibitor; ATP 99.9 3.5E-23 1.2E-27 194.5 10.4 146 4-158 296-460 (538)
37 3gd7_A Fusion complex of cysti 99.9 5.2E-24 1.8E-28 192.8 3.6 150 3-162 48-231 (390)
38 3b5x_A Lipid A export ATP-bind 99.9 1.9E-23 6.5E-28 198.0 6.5 135 4-146 371-541 (582)
39 3b60_A Lipid A export ATP-bind 99.9 3.1E-23 1.1E-27 196.6 7.6 135 4-146 371-541 (582)
40 2yl4_A ATP-binding cassette SU 99.9 4.9E-23 1.7E-27 195.6 8.8 156 4-168 372-565 (595)
41 4a82_A Cystic fibrosis transme 99.9 4.2E-23 1.4E-27 195.6 6.5 149 3-160 368-551 (578)
42 3qf4_B Uncharacterized ABC tra 99.9 7.2E-23 2.5E-27 194.7 7.2 151 3-162 382-567 (598)
43 1yqt_A RNAse L inhibitor; ATP- 99.9 1.5E-22 5E-27 190.4 9.1 145 3-156 48-230 (538)
44 3bk7_A ABC transporter ATP-bin 99.9 1.4E-22 4.8E-27 192.8 9.1 145 4-158 384-546 (607)
45 3qf4_A ABC transporter, ATP-bi 99.9 6.5E-23 2.2E-27 194.6 5.8 136 3-146 370-540 (587)
46 3bk7_A ABC transporter ATP-bin 99.9 3.5E-22 1.2E-26 190.1 9.6 144 4-156 119-300 (607)
47 3ozx_A RNAse L inhibitor; ATP 99.9 3.2E-22 1.1E-26 188.0 9.1 144 3-156 26-209 (538)
48 1yqt_A RNAse L inhibitor; ATP- 99.9 1.3E-22 4.5E-27 190.7 6.4 146 3-158 313-476 (538)
49 3j16_B RLI1P; ribosome recycli 99.9 3.6E-22 1.2E-26 189.9 8.1 161 4-174 380-560 (608)
50 2bbs_A Cystic fibrosis transme 99.9 7.7E-23 2.6E-27 178.5 2.5 144 4-157 66-231 (290)
51 3j16_B RLI1P; ribosome recycli 99.8 9.8E-22 3.4E-26 186.9 6.2 145 4-157 105-294 (608)
52 3g5u_A MCG1178, multidrug resi 99.8 5.8E-21 2E-25 194.9 4.1 148 4-161 1061-1246(1284)
53 4f4c_A Multidrug resistance pr 99.8 1.4E-20 4.9E-25 192.5 5.1 136 4-148 1107-1280(1321)
54 3g5u_A MCG1178, multidrug resi 99.8 1.7E-20 5.7E-25 191.5 5.5 160 4-172 418-612 (1284)
55 4f4c_A Multidrug resistance pr 99.8 5.9E-20 2E-24 187.9 7.6 155 4-173 446-641 (1321)
56 3ux8_A Excinuclease ABC, A sub 99.8 1.2E-19 4.1E-24 174.5 7.8 86 62-156 185-275 (670)
57 2iw3_A Elongation factor 3A; a 99.8 7.7E-20 2.6E-24 180.8 3.4 89 59-157 880-971 (986)
58 3b85_A Phosphate starvation-in 99.8 1.6E-19 5.5E-24 150.3 2.4 130 4-145 24-162 (208)
59 2iw3_A Elongation factor 3A; a 99.7 2.2E-18 7.5E-23 170.5 8.2 144 3-161 462-622 (986)
60 3ux8_A Excinuclease ABC, A sub 99.7 3.6E-18 1.2E-22 164.2 6.8 89 59-156 523-617 (670)
61 4gp7_A Metallophosphoesterase; 99.7 1.4E-18 4.6E-23 139.8 2.8 55 86-147 91-162 (171)
62 2npi_A Protein CLP1; CLP1-PCF1 99.7 7.4E-19 2.5E-23 162.2 1.4 121 4-137 140-295 (460)
63 1yrb_A ATP(GTP)binding protein 99.7 8.1E-16 2.8E-20 130.4 16.0 224 2-236 14-243 (262)
64 1ye8_A Protein THEP1, hypothet 99.7 2.4E-17 8E-22 133.9 5.6 132 4-152 2-151 (178)
65 1tq4_A IIGP1, interferon-induc 99.7 6.2E-18 2.1E-22 153.9 0.2 145 3-155 70-248 (413)
66 2vf7_A UVRA2, excinuclease ABC 99.6 7E-17 2.4E-21 158.1 3.8 86 59-154 710-802 (842)
67 3pih_A Uvrabc system protein A 99.6 5.1E-16 1.7E-20 153.1 5.5 79 59-145 785-869 (916)
68 2pt7_A CAG-ALFA; ATPase, prote 99.6 6.4E-15 2.2E-19 130.5 11.6 118 4-160 173-290 (330)
69 2eyu_A Twitching motility prot 99.6 6.2E-15 2.1E-19 126.5 11.1 117 3-157 26-145 (261)
70 3b9q_A Chloroplast SRP recepto 99.6 2E-15 6.9E-20 132.2 7.8 122 3-137 101-254 (302)
71 4aby_A DNA repair protein RECN 99.6 3.2E-15 1.1E-19 135.2 8.2 52 81-136 296-352 (415)
72 3szr_A Interferon-induced GTP- 99.6 5.5E-16 1.9E-20 147.6 2.9 156 5-180 48-229 (608)
73 2og2_A Putative signal recogni 99.6 5.1E-14 1.7E-18 126.0 15.0 122 3-137 158-311 (359)
74 2r6f_A Excinuclease ABC subuni 99.6 1.3E-15 4.6E-20 149.9 4.6 79 59-146 825-910 (972)
75 2ehv_A Hypothetical protein PH 99.6 4.5E-16 1.5E-20 130.6 1.0 129 3-147 31-185 (251)
76 1znw_A Guanylate kinase, GMP k 99.5 1.3E-16 4.3E-21 131.8 -4.3 59 92-157 137-201 (207)
77 3sop_A Neuronal-specific septi 99.5 1.2E-15 3.9E-20 131.7 1.4 39 2-40 2-40 (270)
78 1e69_A Chromosome segregation 99.5 1.2E-13 4.2E-18 121.5 12.0 55 80-136 219-278 (322)
79 2ygr_A Uvrabc system protein A 99.5 9.1E-14 3.1E-18 137.4 11.9 78 60-146 844-928 (993)
80 3jvv_A Twitching mobility prot 99.5 1.3E-13 4.5E-18 123.3 9.7 118 4-157 125-243 (356)
81 1rj9_A FTSY, signal recognitio 99.4 9.9E-13 3.4E-17 115.2 13.9 125 3-137 103-255 (304)
82 4a74_A DNA repair and recombin 99.4 7.6E-14 2.6E-18 115.5 6.0 37 3-39 26-69 (231)
83 3qf7_A RAD50; ABC-ATPase, ATPa 99.4 6.3E-14 2.1E-18 125.7 5.2 59 80-145 279-346 (365)
84 2w0m_A SSO2452; RECA, SSPF, un 99.4 5.8E-13 2E-17 109.9 8.9 118 3-137 24-165 (235)
85 2kjq_A DNAA-related protein; s 99.4 7.5E-13 2.6E-17 104.1 8.9 82 4-137 38-122 (149)
86 3thx_A DNA mismatch repair pro 99.4 5E-13 1.7E-17 132.3 8.0 121 3-155 663-795 (934)
87 1tf7_A KAIC; homohexamer, hexa 99.4 2.2E-13 7.6E-18 127.4 5.0 122 3-137 282-414 (525)
88 1tf7_A KAIC; homohexamer, hexa 99.4 9.4E-14 3.2E-18 129.9 2.1 145 3-159 40-209 (525)
89 2o8b_B DNA mismatch repair pro 99.4 4.6E-13 1.6E-17 133.8 6.0 127 3-153 790-921 (1022)
90 1cr0_A DNA primase/helicase; R 99.3 9E-13 3.1E-17 114.1 6.1 127 3-137 36-194 (296)
91 2ewv_A Twitching motility prot 99.3 3.2E-12 1.1E-16 114.9 9.5 118 3-157 137-256 (372)
92 3aez_A Pantothenate kinase; tr 99.3 9E-14 3.1E-18 122.2 -1.1 105 3-112 91-209 (312)
93 3ec2_A DNA replication protein 99.3 3.9E-12 1.3E-16 102.1 8.1 99 3-137 39-140 (180)
94 2i3b_A HCR-ntpase, human cance 99.3 5.9E-14 2E-18 114.9 -2.7 35 4-40 3-37 (189)
95 3qkt_A DNA double-strand break 99.3 6E-12 2E-16 111.5 8.9 48 87-137 263-311 (339)
96 3thx_B DNA mismatch repair pro 99.3 2.6E-12 9E-17 126.9 6.4 113 3-136 674-792 (918)
97 3e70_C DPA, signal recognition 99.3 1.4E-11 4.9E-16 108.8 9.9 127 3-141 130-280 (328)
98 1pzn_A RAD51, DNA repair and r 99.3 1.1E-11 3.9E-16 110.3 9.2 128 3-148 132-290 (349)
99 1ewq_A DNA mismatch repair pro 99.3 3.1E-12 1E-16 124.5 6.0 108 4-144 578-698 (765)
100 1z6g_A Guanylate kinase; struc 99.2 2.6E-13 8.8E-18 113.0 -2.6 136 3-155 24-205 (218)
101 1nlf_A Regulatory protein REPA 99.2 1.3E-11 4.6E-16 106.0 7.6 126 3-137 31-178 (279)
102 1wb9_A DNA mismatch repair pro 99.2 1.3E-11 4.5E-16 120.6 6.9 118 3-145 608-731 (800)
103 1s96_A Guanylate kinase, GMP k 99.2 3.3E-12 1.1E-16 106.7 1.4 113 3-136 17-136 (219)
104 2dpy_A FLII, flagellum-specifi 99.1 1.5E-11 5.1E-16 112.8 3.8 148 4-165 159-336 (438)
105 2obl_A ESCN; ATPase, hydrolase 99.1 5E-11 1.7E-15 106.1 6.5 149 4-165 73-247 (347)
106 1lw7_A Transcriptional regulat 99.1 3.9E-11 1.3E-15 107.1 5.1 142 3-155 171-339 (365)
107 2cvh_A DNA repair and recombin 99.1 7E-10 2.4E-14 90.8 11.8 118 3-137 21-153 (220)
108 1n0w_A DNA repair protein RAD5 99.1 7.9E-10 2.7E-14 91.9 12.1 37 3-39 25-68 (243)
109 3asz_A Uridine kinase; cytidin 99.1 2.3E-12 7.7E-17 105.8 -3.6 121 3-134 7-155 (211)
110 1sxj_E Activator 1 40 kDa subu 99.1 3.7E-10 1.3E-14 99.4 8.7 116 5-136 39-170 (354)
111 2gza_A Type IV secretion syste 99.0 1.5E-09 5.2E-14 96.9 11.0 126 3-159 176-301 (361)
112 1vma_A Cell division protein F 99.0 1.2E-09 4.2E-14 95.5 9.8 94 2-109 104-197 (306)
113 2qag_C Septin-7; cell cycle, c 99.0 2.7E-10 9.2E-15 103.8 5.5 121 3-136 32-173 (418)
114 1ls1_A Signal recognition part 99.0 3.5E-09 1.2E-13 92.1 12.2 107 3-126 99-209 (295)
115 2bbw_A Adenylate kinase 4, AK4 99.0 4.5E-11 1.5E-15 100.7 0.0 37 3-39 28-67 (246)
116 2yhs_A FTSY, cell division pro 99.0 1.3E-08 4.5E-13 94.2 15.4 39 2-40 293-331 (503)
117 1htw_A HI0065; nucleotide-bind 99.0 1.7E-10 5.9E-15 91.6 2.4 37 3-40 34-70 (158)
118 3lda_A DNA repair protein RAD5 99.0 3.1E-09 1.1E-13 96.2 11.0 119 3-137 179-325 (400)
119 2bdt_A BH3686; alpha-beta prot 98.9 1.2E-09 4E-14 88.0 6.9 37 1-40 1-37 (189)
120 2v9p_A Replication protein E1; 98.9 4.3E-11 1.5E-15 104.8 -3.1 98 3-119 127-233 (305)
121 1pui_A ENGB, probable GTP-bind 98.9 6.6E-10 2.2E-14 90.4 3.8 126 2-131 26-201 (210)
122 2qnr_A Septin-2, protein NEDD5 98.9 3.7E-09 1.3E-13 92.1 7.1 37 3-40 19-56 (301)
123 2qag_B Septin-6, protein NEDD5 98.8 2.7E-09 9.2E-14 97.3 5.9 49 86-137 166-216 (427)
124 2px0_A Flagellar biosynthesis 98.8 1.4E-08 4.8E-13 88.3 10.0 92 3-115 106-198 (296)
125 2dr3_A UPF0273 protein PH0284; 98.8 5.1E-08 1.7E-12 80.9 11.0 40 98-137 128-170 (247)
126 3euj_A Chromosome partition pr 98.8 1.9E-09 6.5E-14 99.7 2.4 38 4-41 31-68 (483)
127 1f2t_B RAD50 ABC-ATPase; DNA d 98.7 1.4E-08 4.7E-13 79.7 5.7 66 79-152 56-130 (148)
128 3kl4_A SRP54, signal recogniti 98.7 1.5E-07 5.1E-12 86.0 12.9 151 3-180 98-253 (433)
129 3pih_A Uvrabc system protein A 98.7 2.9E-09 9.9E-14 105.2 1.6 114 20-137 386-523 (916)
130 1oix_A RAS-related protein RAB 98.7 9.3E-09 3.2E-13 82.9 4.3 37 3-39 30-77 (191)
131 1sq5_A Pantothenate kinase; P- 98.7 1.3E-08 4.6E-13 88.7 4.3 37 3-39 81-122 (308)
132 1zp6_A Hypothetical protein AT 98.6 1.7E-08 6E-13 80.9 4.3 35 3-39 10-44 (191)
133 2qm8_A GTPase/ATPase; G protei 98.6 1.3E-08 4.6E-13 90.0 3.7 40 3-42 56-95 (337)
134 2zr9_A Protein RECA, recombina 98.6 1E-07 3.5E-12 84.8 9.0 117 3-137 62-195 (349)
135 1qhl_A Protein (cell division 98.6 1.6E-09 5.6E-14 90.9 -2.5 37 4-40 29-65 (227)
136 3a00_A Guanylate kinase, GMP k 98.6 1.4E-08 4.9E-13 81.8 2.8 30 4-33 3-32 (186)
137 2f1r_A Molybdopterin-guanine d 98.6 6.6E-09 2.3E-13 83.4 0.4 39 1-39 1-42 (171)
138 3c8u_A Fructokinase; YP_612366 98.6 1.5E-08 5E-13 83.2 2.2 38 3-40 23-63 (208)
139 1udx_A The GTP-binding protein 98.6 2.6E-08 8.8E-13 90.6 3.8 137 4-155 159-320 (416)
140 1p9r_A General secretion pathw 98.6 3.2E-08 1.1E-12 90.1 4.3 37 4-40 169-205 (418)
141 1u0l_A Probable GTPase ENGC; p 98.6 3.1E-08 1.1E-12 86.1 3.9 38 3-40 170-210 (301)
142 1j8m_F SRP54, signal recogniti 98.5 1.4E-06 4.7E-11 75.8 13.8 39 3-41 99-137 (297)
143 3tqc_A Pantothenate kinase; bi 98.5 4.9E-08 1.7E-12 85.9 4.4 39 2-40 92-132 (321)
144 1rz3_A Hypothetical protein rb 98.5 4.7E-08 1.6E-12 79.7 3.4 38 3-40 23-60 (201)
145 1lvg_A Guanylate kinase, GMP k 98.5 3.3E-08 1.1E-12 80.7 2.5 25 3-27 5-29 (198)
146 1fnn_A CDC6P, cell division co 98.5 3.9E-07 1.3E-11 80.5 9.5 116 4-136 46-165 (389)
147 3tr0_A Guanylate kinase, GMP k 98.5 7.6E-08 2.6E-12 77.9 3.8 33 3-39 8-40 (205)
148 2oap_1 GSPE-2, type II secreti 98.5 9.6E-08 3.3E-12 89.0 4.7 37 3-39 261-297 (511)
149 1zu4_A FTSY; GTPase, signal re 98.5 2.2E-07 7.7E-12 81.6 6.7 39 3-41 106-144 (320)
150 1nij_A Hypothetical protein YJ 98.5 5.9E-08 2E-12 85.0 3.0 39 3-41 5-51 (318)
151 3t34_A Dynamin-related protein 98.5 9.8E-07 3.3E-11 78.3 10.8 31 4-34 36-68 (360)
152 3hr8_A Protein RECA; alpha and 98.4 7.6E-07 2.6E-11 79.3 9.8 89 3-109 62-150 (356)
153 3lxx_A GTPase IMAP family memb 98.4 5.5E-06 1.9E-10 68.8 14.3 27 3-29 30-56 (239)
154 3dm5_A SRP54, signal recogniti 98.4 1.1E-05 3.8E-10 73.7 17.1 39 2-40 100-138 (443)
155 2yv5_A YJEQ protein; hydrolase 98.4 1.3E-07 4.5E-12 82.3 4.1 37 3-40 166-205 (302)
156 1kgd_A CASK, peripheral plasma 98.4 1.4E-07 4.6E-12 75.6 3.0 38 3-40 6-44 (180)
157 4eun_A Thermoresistant glucoki 98.4 1.7E-07 5.8E-12 76.2 3.5 34 3-40 30-63 (200)
158 2rcn_A Probable GTPase ENGC; Y 98.4 2E-07 6.7E-12 83.2 4.2 36 4-39 217-254 (358)
159 3lnc_A Guanylate kinase, GMP k 98.4 1.2E-07 3.9E-12 78.8 2.2 26 3-28 28-54 (231)
160 1odf_A YGR205W, hypothetical 3 98.4 5.9E-08 2E-12 84.2 0.5 28 2-29 31-58 (290)
161 2ffh_A Protein (FFH); SRP54, s 98.3 1.2E-05 4E-10 73.3 15.4 39 3-41 99-137 (425)
162 3k53_A Ferrous iron transport 98.3 6.1E-07 2.1E-11 76.4 6.4 25 2-26 3-27 (271)
163 4e22_A Cytidylate kinase; P-lo 98.3 5.6E-08 1.9E-12 82.3 -0.2 32 3-34 28-62 (252)
164 3pqc_A Probable GTP-binding pr 98.3 2.4E-05 8.2E-10 61.8 15.2 23 3-25 24-46 (195)
165 2j41_A Guanylate kinase; GMP, 98.3 3.1E-07 1E-11 74.3 3.7 29 3-31 7-35 (207)
166 1t9h_A YLOQ, probable GTPase E 98.3 9.9E-08 3.4E-12 83.4 0.7 37 3-39 174-213 (307)
167 1kag_A SKI, shikimate kinase I 98.3 2.8E-07 9.6E-12 72.6 3.2 27 1-27 3-29 (173)
168 3uie_A Adenylyl-sulfate kinase 98.3 1.9E-07 6.6E-12 75.9 2.2 37 3-40 26-64 (200)
169 1l8q_A Chromosomal replication 98.3 6.1E-06 2.1E-10 71.7 11.9 98 4-137 39-138 (324)
170 2www_A Methylmalonic aciduria 98.3 3.5E-07 1.2E-11 81.2 3.7 40 3-42 75-114 (349)
171 1jjv_A Dephospho-COA kinase; P 98.3 4.5E-07 1.5E-11 73.7 4.1 32 1-37 1-32 (206)
172 2vp4_A Deoxynucleoside kinase; 98.3 3.7E-07 1.3E-11 76.0 3.5 34 3-40 21-54 (230)
173 2z4s_A Chromosomal replication 98.3 2.4E-06 8.1E-11 78.1 9.2 98 4-136 132-233 (440)
174 2ged_A SR-beta, signal recogni 98.2 4.5E-06 1.6E-10 66.3 9.2 24 3-26 49-72 (193)
175 2r6a_A DNAB helicase, replicat 98.2 3E-06 1E-10 77.6 9.1 131 4-137 205-361 (454)
176 2r6f_A Excinuclease ABC subuni 98.2 3E-06 1E-10 83.9 9.6 70 62-136 487-562 (972)
177 3kta_A Chromosome segregation 98.2 5.4E-07 1.8E-11 71.7 3.4 29 4-32 28-56 (182)
178 2jeo_A Uridine-cytidine kinase 98.2 4.1E-07 1.4E-11 76.3 2.8 25 2-26 25-49 (245)
179 2vf7_A UVRA2, excinuclease ABC 98.2 4E-06 1.4E-10 82.2 9.9 70 62-136 362-437 (842)
180 3tau_A Guanylate kinase, GMP k 98.2 7.6E-07 2.6E-11 72.9 3.9 38 3-40 9-47 (208)
181 2ygr_A Uvrabc system protein A 98.2 3.3E-06 1.1E-10 83.8 9.0 71 62-136 504-579 (993)
182 4dhe_A Probable GTP-binding pr 98.2 7.5E-05 2.6E-09 60.6 15.6 23 3-25 30-52 (223)
183 1knq_A Gluconate kinase; ALFA/ 98.2 8.4E-07 2.9E-11 70.1 3.7 33 3-39 9-41 (175)
184 3bos_A Putative DNA replicatio 98.2 3.4E-06 1.2E-10 69.1 7.5 89 3-136 53-144 (242)
185 1cke_A CK, MSSA, protein (cyti 98.2 3E-07 1E-11 75.6 0.6 34 2-35 5-41 (227)
186 2f9l_A RAB11B, member RAS onco 98.2 8.9E-07 3E-11 71.3 3.4 36 3-38 6-52 (199)
187 1nrj_B SR-beta, signal recogni 98.2 1.7E-05 5.9E-10 64.3 11.1 24 3-26 13-36 (218)
188 1kao_A RAP2A; GTP-binding prot 98.2 4.1E-05 1.4E-09 58.5 12.6 22 3-24 4-25 (167)
189 2v3c_C SRP54, signal recogniti 98.1 7.4E-06 2.5E-10 74.8 9.6 39 3-41 100-138 (432)
190 3kta_B Chromosome segregation 98.1 3.3E-06 1.1E-10 67.7 6.2 56 79-136 63-123 (173)
191 1svi_A GTP-binding protein YSX 98.1 0.00014 4.9E-09 57.4 15.8 23 3-25 24-46 (195)
192 2x8a_A Nuclear valosin-contain 98.1 1.4E-06 4.9E-11 74.6 4.2 35 4-40 46-80 (274)
193 3p32_A Probable GTPase RV1496/ 98.1 1.4E-05 5E-10 70.7 10.5 42 2-43 79-120 (355)
194 2w58_A DNAI, primosome compone 98.1 4E-06 1.4E-10 67.7 6.2 34 3-36 55-88 (202)
195 2ius_A DNA translocase FTSK; n 98.1 1.1E-05 3.7E-10 75.1 9.8 38 5-42 170-209 (512)
196 3i8s_A Ferrous iron transport 98.1 3.2E-06 1.1E-10 72.3 4.9 24 2-25 3-26 (274)
197 2a9k_A RAS-related protein RAL 98.1 8.4E-05 2.9E-09 58.0 12.9 23 3-25 19-41 (187)
198 1ni3_A YCHF GTPase, YCHF GTP-b 98.0 2.9E-06 9.9E-11 76.5 4.7 51 98-155 139-193 (392)
199 1c1y_A RAS-related protein RAP 98.0 7.9E-05 2.7E-09 57.1 12.3 22 3-24 4-25 (167)
200 2fn4_A P23, RAS-related protei 98.0 6E-05 2E-09 58.6 11.8 23 3-25 10-32 (181)
201 2dyk_A GTP-binding protein; GT 98.0 1.7E-05 5.8E-10 60.7 8.4 23 3-25 2-24 (161)
202 1u8z_A RAS-related protein RAL 98.0 9.7E-05 3.3E-09 56.4 12.6 23 3-25 5-27 (168)
203 3ney_A 55 kDa erythrocyte memb 98.0 2.1E-06 7.4E-11 70.3 3.0 25 3-27 20-44 (197)
204 2p67_A LAO/AO transport system 98.0 2.8E-06 9.5E-11 75.0 3.9 40 3-42 57-96 (341)
205 3cr8_A Sulfate adenylyltranfer 98.0 2E-06 6.8E-11 80.8 2.7 35 3-37 370-406 (552)
206 1np6_A Molybdopterin-guanine d 98.0 4.2E-06 1.5E-10 67.1 3.9 40 1-40 5-44 (174)
207 3k1j_A LON protease, ATP-depen 98.0 2.4E-05 8.2E-10 74.1 9.7 35 4-38 62-97 (604)
208 4ad8_A DNA repair protein RECN 98.0 5.3E-06 1.8E-10 77.1 5.0 56 82-145 399-459 (517)
209 2bov_A RAla, RAS-related prote 98.0 0.00013 4.5E-09 58.1 12.7 23 3-25 15-37 (206)
210 2cxx_A Probable GTP-binding pr 98.0 9.5E-05 3.3E-09 58.1 11.6 23 3-25 2-24 (190)
211 2qt1_A Nicotinamide riboside k 97.9 7.8E-06 2.7E-10 66.4 4.9 26 2-27 21-46 (207)
212 1ixz_A ATP-dependent metallopr 97.9 4.3E-06 1.5E-10 70.1 3.4 33 4-38 51-83 (254)
213 2if2_A Dephospho-COA kinase; a 97.9 4.5E-06 1.5E-10 67.5 3.4 22 3-24 2-23 (204)
214 2yvu_A Probable adenylyl-sulfa 97.9 4.3E-06 1.5E-10 66.7 3.1 36 2-37 13-48 (186)
215 4fcw_A Chaperone protein CLPB; 97.9 1.9E-05 6.6E-10 67.6 7.4 98 3-125 48-145 (311)
216 2ce7_A Cell division protein F 97.9 5.3E-05 1.8E-09 69.9 10.6 24 3-26 50-73 (476)
217 3t61_A Gluconokinase; PSI-biol 97.9 4.4E-06 1.5E-10 67.6 2.8 25 2-26 18-42 (202)
218 1ky3_A GTP-binding protein YPT 97.9 1.2E-05 4.2E-10 62.7 5.3 23 3-25 9-31 (182)
219 2pez_A Bifunctional 3'-phospho 97.9 5.5E-06 1.9E-10 65.7 3.1 35 3-38 6-42 (179)
220 1iy2_A ATP-dependent metallopr 97.9 5.6E-06 1.9E-10 70.5 3.4 33 4-38 75-107 (278)
221 1in4_A RUVB, holliday junction 97.9 1.2E-06 4.1E-11 77.0 -0.9 34 4-37 53-90 (334)
222 3iby_A Ferrous iron transport 97.9 3E-05 1E-09 65.6 7.8 22 4-25 3-24 (256)
223 3n70_A Transport activator; si 97.9 6E-05 2.1E-09 57.9 8.8 88 4-137 26-113 (145)
224 2qby_A CDC6 homolog 1, cell di 97.9 8.3E-06 2.8E-10 71.4 4.4 26 4-29 47-72 (386)
225 1ly1_A Polynucleotide kinase; 97.9 8E-06 2.7E-10 64.2 3.8 24 1-24 1-24 (181)
226 2j37_W Signal recognition part 97.9 0.00016 5.5E-09 67.1 13.1 38 3-40 102-139 (504)
227 3lxw_A GTPase IMAP family memb 97.9 9.6E-05 3.3E-09 62.0 10.4 23 3-25 22-44 (247)
228 1u94_A RECA protein, recombina 97.8 5.6E-05 1.9E-09 67.2 9.1 35 3-37 64-98 (356)
229 1v5w_A DMC1, meiotic recombina 97.8 0.00013 4.5E-09 64.3 11.4 23 3-25 123-145 (343)
230 1m7g_A Adenylylsulfate kinase; 97.8 5.2E-06 1.8E-10 67.8 2.0 36 2-37 25-62 (211)
231 2aka_B Dynamin-1; fusion prote 97.8 0.00042 1.4E-08 58.9 13.9 24 3-26 27-50 (299)
232 2v1u_A Cell division control p 97.8 3.2E-05 1.1E-09 67.8 6.7 25 4-28 46-70 (387)
233 2z43_A DNA repair and recombin 97.8 0.00011 3.6E-09 64.3 9.9 24 3-26 108-131 (324)
234 3def_A T7I23.11 protein; chlor 97.8 3.5E-05 1.2E-09 65.1 6.6 22 3-24 37-58 (262)
235 3h4m_A Proteasome-activating n 97.8 0.00027 9.2E-09 59.8 12.1 24 3-26 52-75 (285)
236 1w1w_A Structural maintenance 97.8 1E-05 3.6E-10 73.3 3.2 55 81-136 334-393 (430)
237 2r8r_A Sensor protein; KDPD, P 97.8 4.4E-05 1.5E-09 63.7 6.7 40 2-41 6-45 (228)
238 1xp8_A RECA protein, recombina 97.8 0.00012 4.2E-09 65.2 9.9 116 4-137 76-208 (366)
239 2x2e_A Dynamin-1; nitration, h 97.8 0.00028 9.5E-09 62.2 12.1 23 4-26 33-55 (353)
240 1f2t_A RAD50 ABC-ATPase; DNA d 97.7 1.5E-05 5.1E-10 62.0 3.4 23 4-26 25-47 (149)
241 2qgz_A Helicase loader, putati 97.7 6.6E-05 2.3E-09 65.3 7.5 33 3-35 153-186 (308)
242 1qhx_A CPT, protein (chloramph 97.7 1.7E-05 5.8E-10 62.5 3.4 27 1-27 2-28 (178)
243 3kb2_A SPBC2 prophage-derived 97.7 1.8E-05 6E-10 61.7 3.4 23 4-26 3-25 (173)
244 4eaq_A DTMP kinase, thymidylat 97.7 2.3E-05 7.9E-10 65.2 4.3 34 2-36 26-59 (229)
245 1xjc_A MOBB protein homolog; s 97.7 1.9E-05 6.5E-10 63.1 3.6 39 3-41 5-43 (169)
246 2o5v_A DNA replication and rep 97.7 6.6E-06 2.2E-10 73.3 0.8 51 80-136 265-327 (359)
247 2o5v_A DNA replication and rep 97.7 2.9E-05 9.9E-10 69.2 5.0 21 4-24 28-48 (359)
248 1w1w_A Structural maintenance 97.7 6E-05 2E-09 68.3 7.1 27 3-29 27-53 (430)
249 3b9p_A CG5977-PA, isoform A; A 97.7 0.0004 1.4E-08 59.1 11.3 24 3-26 55-78 (297)
250 2e87_A Hypothetical protein PH 97.7 1.7E-05 6E-10 70.1 2.9 24 3-26 168-191 (357)
251 3lw7_A Adenylate kinase relate 97.7 2.4E-05 8.1E-10 60.7 3.2 20 3-22 2-21 (179)
252 1lnz_A SPO0B-associated GTP-bi 97.7 4.5E-05 1.5E-09 67.4 5.4 118 99-221 206-331 (342)
253 2xxa_A Signal recognition part 97.6 0.00087 3E-08 61.0 13.9 39 3-41 101-140 (433)
254 3vaa_A Shikimate kinase, SK; s 97.6 2.7E-05 9.2E-10 62.9 3.4 24 3-26 26-49 (199)
255 2wji_A Ferrous iron transport 97.6 3.9E-05 1.4E-09 59.6 4.2 25 2-26 3-27 (165)
256 1ypw_A Transitional endoplasmi 97.6 0.00013 4.6E-09 71.3 8.8 25 4-28 240-264 (806)
257 2qor_A Guanylate kinase; phosp 97.6 2.5E-05 8.4E-10 63.4 2.9 25 3-27 13-37 (204)
258 1mky_A Probable GTP-binding pr 97.6 4.2E-05 1.4E-09 69.6 4.8 36 3-38 181-228 (439)
259 1via_A Shikimate kinase; struc 97.6 2.9E-05 9.8E-10 61.2 3.1 23 4-26 6-28 (175)
260 3ake_A Cytidylate kinase; CMP 97.6 3.6E-05 1.2E-09 61.9 3.5 26 1-26 1-26 (208)
261 1gtv_A TMK, thymidylate kinase 97.6 1.1E-05 3.6E-10 65.5 0.3 32 4-35 2-33 (214)
262 3cm0_A Adenylate kinase; ATP-b 97.6 3.8E-05 1.3E-09 60.9 3.5 25 2-26 4-28 (186)
263 1e6c_A Shikimate kinase; phosp 97.6 3.6E-05 1.2E-09 60.1 3.4 26 1-26 1-26 (173)
264 3co5_A Putative two-component 97.6 6.9E-05 2.4E-09 57.4 4.8 39 98-137 75-113 (143)
265 1vht_A Dephospho-COA kinase; s 97.6 4.3E-05 1.5E-09 62.4 3.8 23 2-24 4-26 (218)
266 1qf9_A UMP/CMP kinase, protein 97.6 4.4E-05 1.5E-09 60.4 3.7 26 1-26 5-30 (194)
267 3r20_A Cytidylate kinase; stru 97.6 1.7E-05 5.8E-10 66.5 1.3 25 2-26 9-33 (233)
268 1uf9_A TT1252 protein; P-loop, 97.6 5.2E-05 1.8E-09 60.7 4.1 24 2-25 8-31 (203)
269 2qz4_A Paraplegin; AAA+, SPG7, 97.5 0.00065 2.2E-08 56.4 10.8 23 4-26 41-63 (262)
270 2zej_A Dardarin, leucine-rich 97.5 4E-05 1.4E-09 60.7 3.1 26 2-27 2-27 (184)
271 2iyv_A Shikimate kinase, SK; t 97.5 4E-05 1.4E-09 60.8 3.0 26 1-26 1-26 (184)
272 2p5t_B PEZT; postsegregational 97.5 3.8E-05 1.3E-09 64.6 3.0 34 2-37 32-65 (253)
273 1svm_A Large T antigen; AAA+ f 97.5 4.2E-05 1.4E-09 68.5 3.3 30 3-35 170-199 (377)
274 2qtf_A Protein HFLX, GTP-bindi 97.5 5.3E-05 1.8E-09 67.5 3.8 24 4-27 181-204 (364)
275 1tev_A UMP-CMP kinase; ploop, 97.5 5.8E-05 2E-09 59.8 3.6 25 2-26 3-27 (196)
276 2rhm_A Putative kinase; P-loop 97.5 5.9E-05 2E-09 59.9 3.7 25 2-26 5-29 (193)
277 2wjg_A FEOB, ferrous iron tran 97.5 5.6E-05 1.9E-09 59.5 3.4 23 3-25 8-30 (188)
278 1kht_A Adenylate kinase; phosp 97.5 6E-05 2.1E-09 59.6 3.5 25 3-27 4-28 (192)
279 3qks_A DNA double-strand break 97.5 5.6E-05 1.9E-09 61.7 3.4 23 4-26 25-47 (203)
280 1sxj_D Activator 1 41 kDa subu 97.5 0.00012 4.2E-09 63.5 5.7 23 5-27 61-83 (353)
281 2bwj_A Adenylate kinase 5; pho 97.5 5.1E-05 1.7E-09 60.6 2.9 25 2-26 12-36 (199)
282 1nks_A Adenylate kinase; therm 97.4 7.6E-05 2.6E-09 59.0 3.7 26 3-28 2-27 (194)
283 4a1f_A DNAB helicase, replicat 97.4 0.00028 9.5E-09 62.3 7.6 36 4-39 48-83 (338)
284 2ze6_A Isopentenyl transferase 97.4 6.6E-05 2.2E-09 63.3 3.4 24 3-26 2-25 (253)
285 3trf_A Shikimate kinase, SK; a 97.4 7.3E-05 2.5E-09 59.2 3.5 25 2-26 5-29 (185)
286 2jaq_A Deoxyguanosine kinase; 97.4 7E-05 2.4E-09 59.9 3.4 24 4-27 2-25 (205)
287 2j69_A Bacterial dynamin-like 97.4 0.001 3.5E-08 64.0 12.0 25 2-26 69-93 (695)
288 2plr_A DTMP kinase, probable t 97.4 9.9E-05 3.4E-09 59.3 4.2 31 3-34 5-35 (213)
289 3nwj_A ATSK2; P loop, shikimat 97.4 6.7E-05 2.3E-09 63.5 3.3 25 2-26 48-72 (250)
290 2ohf_A Protein OLA1, GTP-bindi 97.4 7.3E-05 2.5E-09 67.4 3.6 35 2-36 22-67 (396)
291 2gj8_A MNME, tRNA modification 97.4 8.5E-05 2.9E-09 58.3 3.6 24 3-26 5-28 (172)
292 2b8t_A Thymidine kinase; deoxy 97.4 0.00016 5.3E-09 60.2 5.3 34 3-36 13-46 (223)
293 3m6a_A ATP-dependent protease 97.4 4.2E-05 1.4E-09 71.6 1.8 34 4-37 110-143 (543)
294 1xwi_A SKD1 protein; VPS4B, AA 97.4 0.0024 8.2E-08 55.5 12.9 24 3-26 46-69 (322)
295 4ag6_A VIRB4 ATPase, type IV s 97.4 8.6E-05 2.9E-09 66.3 3.7 34 4-37 37-70 (392)
296 3d3q_A TRNA delta(2)-isopenten 97.4 0.00013 4.3E-09 64.5 4.6 27 1-27 6-32 (340)
297 1ltq_A Polynucleotide kinase; 97.4 0.0001 3.6E-09 63.0 3.8 24 1-24 1-24 (301)
298 1uj2_A Uridine-cytidine kinase 97.4 0.00012 4.2E-09 61.3 4.2 26 2-27 22-47 (252)
299 1gvn_B Zeta; postsegregational 97.4 0.0001 3.6E-09 63.3 3.8 33 2-36 33-65 (287)
300 1jal_A YCHF protein; nucleotid 97.4 0.00015 5.1E-09 64.6 4.8 24 1-24 1-24 (363)
301 2dy1_A Elongation factor G; tr 97.4 0.00012 4.1E-09 70.1 4.4 31 3-33 10-42 (665)
302 1q3t_A Cytidylate kinase; nucl 97.3 0.0001 3.5E-09 61.1 3.4 25 2-26 16-40 (236)
303 3auy_A DNA double-strand break 97.3 0.00024 8.1E-09 63.2 5.9 46 88-137 296-343 (371)
304 2z0h_A DTMP kinase, thymidylat 97.3 8.1E-05 2.8E-09 59.3 2.6 26 4-29 2-27 (197)
305 2v54_A DTMP kinase, thymidylat 97.3 0.00013 4.3E-09 58.5 3.8 25 2-26 4-28 (204)
306 1ex7_A Guanylate kinase; subst 97.3 0.0001 3.5E-09 59.6 3.2 22 5-26 4-25 (186)
307 2cdn_A Adenylate kinase; phosp 97.3 0.00013 4.3E-09 58.8 3.6 25 2-26 20-44 (201)
308 2chg_A Replication factor C sm 97.3 0.00029 9.8E-09 56.2 5.7 22 5-26 41-62 (226)
309 1y63_A LMAJ004144AAA protein; 97.3 0.00013 4.4E-09 58.2 3.5 23 3-25 11-33 (184)
310 2c95_A Adenylate kinase 1; tra 97.3 0.00013 4.4E-09 58.0 3.4 24 3-26 10-33 (196)
311 2wwf_A Thymidilate kinase, put 97.3 0.00013 4.5E-09 58.8 3.5 26 2-27 10-35 (212)
312 3gee_A MNME, tRNA modification 97.3 0.00019 6.7E-09 66.1 5.0 23 3-25 234-256 (476)
313 1sxj_C Activator 1 40 kDa subu 97.3 6.9E-05 2.4E-09 65.5 1.7 35 5-39 49-83 (340)
314 1ega_A Protein (GTP-binding pr 97.3 0.00013 4.5E-09 63.0 3.3 24 3-26 9-32 (301)
315 3fb4_A Adenylate kinase; psych 97.3 0.00015 5.1E-09 58.9 3.3 23 4-26 2-24 (216)
316 4b4t_J 26S protease regulatory 97.3 0.0036 1.2E-07 56.4 12.6 25 3-27 183-207 (405)
317 2grj_A Dephospho-COA kinase; T 97.2 0.00017 5.7E-09 58.5 3.5 23 3-25 13-35 (192)
318 2dhr_A FTSH; AAA+ protein, hex 97.2 0.00018 6.2E-09 66.7 4.2 35 4-40 66-100 (499)
319 1ukz_A Uridylate kinase; trans 97.2 0.00018 6E-09 57.9 3.6 24 3-26 16-39 (203)
320 3iij_A Coilin-interacting nucl 97.2 0.00016 5.6E-09 57.0 3.3 24 3-26 12-35 (180)
321 3io5_A Recombination and repai 97.2 0.00093 3.2E-08 58.5 8.3 117 4-137 30-169 (333)
322 2pbr_A DTMP kinase, thymidylat 97.2 0.00017 5.8E-09 57.1 3.3 24 4-27 2-25 (195)
323 1lv7_A FTSH; alpha/beta domain 97.2 0.00017 5.7E-09 60.3 3.4 24 4-27 47-70 (257)
324 1wb1_A Translation elongation 97.2 0.0032 1.1E-07 58.0 12.2 23 3-25 20-42 (482)
325 2i1q_A DNA repair and recombin 97.2 0.0017 5.8E-08 56.2 9.9 22 3-24 99-120 (322)
326 3dl0_A Adenylate kinase; phosp 97.2 0.00018 6.1E-09 58.5 3.3 23 4-26 2-24 (216)
327 1zak_A Adenylate kinase; ATP:A 97.2 0.00018 6.1E-09 58.9 3.2 24 3-26 6-29 (222)
328 3j2k_7 ERF3, eukaryotic polype 97.2 0.0038 1.3E-07 56.7 12.4 23 3-25 18-40 (439)
329 2vli_A Antibiotic resistance p 97.2 0.00012 4E-09 57.7 2.0 24 3-26 6-29 (183)
330 2wsm_A Hydrogenase expression/ 97.2 0.00029 9.9E-09 57.1 4.5 37 3-40 31-67 (221)
331 2xau_A PRE-mRNA-splicing facto 97.2 0.00068 2.3E-08 66.0 7.8 26 4-29 111-136 (773)
332 3cmu_A Protein RECA, recombina 97.2 0.0013 4.5E-08 69.7 10.2 118 3-138 1428-1562(2050)
333 3zvr_A Dynamin-1; hydrolase, D 97.2 0.0043 1.5E-07 60.3 13.2 77 98-180 149-232 (772)
334 2ce2_X GTPase HRAS; signaling 97.2 0.00024 8.2E-09 54.0 3.7 23 3-25 4-26 (166)
335 1zd8_A GTP:AMP phosphotransfer 97.2 0.00018 6.1E-09 59.2 3.1 24 3-26 8-31 (227)
336 3sr0_A Adenylate kinase; phosp 97.2 0.0002 6.7E-09 58.8 3.3 23 4-26 2-24 (206)
337 2f6r_A COA synthase, bifunctio 97.2 0.00022 7.4E-09 61.1 3.6 23 2-24 75-97 (281)
338 3a4m_A L-seryl-tRNA(SEC) kinas 97.2 0.0002 6.7E-09 60.5 3.2 25 3-27 5-29 (260)
339 1nn5_A Similar to deoxythymidy 97.1 0.00023 7.7E-09 57.4 3.3 25 3-27 10-34 (215)
340 1a7j_A Phosphoribulokinase; tr 97.1 7.2E-05 2.5E-09 64.5 0.3 26 2-27 5-30 (290)
341 1aky_A Adenylate kinase; ATP:A 97.1 0.00024 8.3E-09 58.0 3.5 24 3-26 5-28 (220)
342 3umf_A Adenylate kinase; rossm 97.1 0.00023 7.9E-09 58.9 3.3 24 3-26 30-53 (217)
343 1m2o_B GTP-binding protein SAR 97.1 0.00027 9.2E-09 56.2 3.7 23 3-25 24-46 (190)
344 2pt5_A Shikimate kinase, SK; a 97.1 0.00025 8.6E-09 55.0 3.4 23 4-26 2-24 (168)
345 3tlx_A Adenylate kinase 2; str 97.1 0.00026 8.8E-09 59.2 3.6 24 3-26 30-53 (243)
346 3p26_A Elongation factor 1 alp 97.1 0.0026 8.8E-08 58.5 10.7 23 3-25 34-56 (483)
347 3syl_A Protein CBBX; photosynt 97.1 0.003 1E-07 53.8 10.4 24 4-27 69-92 (309)
348 1z2a_A RAS-related protein RAB 97.1 0.00026 8.9E-09 54.2 3.3 23 3-25 6-28 (168)
349 1f6b_A SAR1; gtpases, N-termin 97.1 0.00029 9.8E-09 56.5 3.7 22 3-24 26-47 (198)
350 2qag_A Septin-2, protein NEDD5 97.1 0.00019 6.7E-09 63.7 2.9 29 3-31 38-66 (361)
351 3crm_A TRNA delta(2)-isopenten 97.1 0.00027 9.2E-09 62.0 3.6 27 1-27 4-30 (323)
352 1jny_A EF-1-alpha, elongation 97.1 0.0042 1.4E-07 56.3 11.6 23 3-25 7-29 (435)
353 1zuh_A Shikimate kinase; alpha 97.1 0.0003 1E-08 54.8 3.4 24 3-26 8-31 (168)
354 3izq_1 HBS1P, elongation facto 97.1 0.0049 1.7E-07 58.4 12.3 23 3-25 168-190 (611)
355 2erx_A GTP-binding protein DI- 97.1 0.00034 1.2E-08 53.6 3.4 22 3-24 4-25 (172)
356 2xb4_A Adenylate kinase; ATP-b 97.1 0.00031 1.1E-08 57.7 3.4 23 4-26 2-24 (223)
357 2nzj_A GTP-binding protein REM 97.0 0.00036 1.2E-08 53.8 3.5 23 3-25 5-27 (175)
358 3q72_A GTP-binding protein RAD 97.0 0.00029 1E-08 54.0 2.8 23 3-25 3-25 (166)
359 1ojl_A Transcriptional regulat 97.0 0.0021 7.3E-08 55.4 8.6 28 4-31 27-54 (304)
360 1z0j_A RAB-22, RAS-related pro 97.0 0.00041 1.4E-08 53.1 3.6 23 3-25 7-29 (170)
361 1ek0_A Protein (GTP-binding pr 97.0 0.00038 1.3E-08 53.2 3.3 23 3-25 4-26 (170)
362 3q85_A GTP-binding protein REM 97.0 0.0004 1.4E-08 53.3 3.5 23 3-25 3-25 (169)
363 1g16_A RAS-related protein SEC 97.0 0.00038 1.3E-08 53.3 3.2 23 3-25 4-26 (170)
364 2h92_A Cytidylate kinase; ross 97.0 0.00031 1.1E-08 57.1 2.9 25 2-26 3-27 (219)
365 1z08_A RAS-related protein RAB 97.0 0.00044 1.5E-08 53.1 3.6 23 3-25 7-29 (170)
366 1wms_A RAB-9, RAB9, RAS-relate 97.0 0.00044 1.5E-08 53.5 3.6 23 3-25 8-30 (177)
367 1e4v_A Adenylate kinase; trans 97.0 0.00037 1.3E-08 56.7 3.2 23 4-26 2-24 (214)
368 1fzq_A ADP-ribosylation factor 97.0 0.00034 1.2E-08 55.1 2.9 23 3-25 17-39 (181)
369 2lkc_A Translation initiation 97.0 0.00044 1.5E-08 53.5 3.5 23 3-25 9-31 (178)
370 3b1v_A Ferrous iron uptake tra 97.0 0.00043 1.5E-08 59.1 3.6 24 2-25 3-26 (272)
371 3clv_A RAB5 protein, putative; 97.0 0.00048 1.7E-08 54.1 3.7 24 3-26 8-31 (208)
372 1jr3_A DNA polymerase III subu 97.0 0.0039 1.3E-07 54.3 9.8 26 3-28 39-64 (373)
373 4dsu_A GTPase KRAS, isoform 2B 97.0 0.00044 1.5E-08 54.0 3.4 23 3-25 5-27 (189)
374 1upt_A ARL1, ADP-ribosylation 97.0 0.0005 1.7E-08 52.8 3.6 23 2-24 7-29 (171)
375 1r2q_A RAS-related protein RAB 97.0 0.00045 1.5E-08 52.8 3.3 22 3-24 7-28 (170)
376 3be4_A Adenylate kinase; malar 97.0 0.00043 1.5E-08 56.5 3.4 24 3-26 6-29 (217)
377 3tw8_B RAS-related protein RAB 97.0 0.00039 1.3E-08 53.8 3.0 22 3-24 10-31 (181)
378 3ihw_A Centg3; RAS, centaurin, 97.0 0.00077 2.6E-08 53.3 4.8 24 2-25 20-43 (184)
379 2hf9_A Probable hydrogenase ni 96.9 0.00063 2.2E-08 55.3 4.3 37 3-40 39-75 (226)
380 3hu3_A Transitional endoplasmi 96.9 0.002 7E-08 59.4 8.1 23 4-26 240-262 (489)
381 3kjh_A CO dehydrogenase/acetyl 96.9 0.0013 4.6E-08 53.9 6.2 39 1-41 1-39 (254)
382 2y8e_A RAB-protein 6, GH09086P 96.9 0.00047 1.6E-08 53.2 3.2 23 3-25 15-37 (179)
383 1moz_A ARL1, ADP-ribosylation 96.9 0.00029 9.9E-09 55.0 2.0 23 2-24 18-40 (183)
384 2hxs_A RAB-26, RAS-related pro 96.9 0.00055 1.9E-08 53.0 3.5 23 3-25 7-29 (178)
385 2vhj_A Ntpase P4, P4; non- hyd 96.9 0.0026 9E-08 55.7 8.1 22 4-25 125-146 (331)
386 3bh0_A DNAB-like replicative h 96.9 0.007 2.4E-07 52.4 10.8 34 4-37 70-103 (315)
387 2zts_A Putative uncharacterize 96.9 0.00082 2.8E-08 55.2 4.6 36 3-38 31-67 (251)
388 3con_A GTPase NRAS; structural 96.9 0.00055 1.9E-08 53.9 3.3 23 3-25 22-44 (190)
389 2oil_A CATX-8, RAS-related pro 96.9 0.00059 2E-08 53.9 3.5 23 3-25 26-48 (193)
390 3auy_A DNA double-strand break 96.9 0.00048 1.6E-08 61.1 3.3 20 4-23 27-46 (371)
391 1z0f_A RAB14, member RAS oncog 96.9 0.00061 2.1E-08 52.6 3.5 23 3-25 16-38 (179)
392 4b4t_L 26S protease subunit RP 96.9 0.0021 7.3E-08 58.5 7.6 25 3-27 216-240 (437)
393 4b4t_H 26S protease regulatory 96.9 0.011 3.8E-07 54.1 12.3 25 3-27 244-268 (467)
394 2r2a_A Uncharacterized protein 96.9 0.00081 2.8E-08 54.8 4.3 22 1-22 4-25 (199)
395 3bc1_A RAS-related protein RAB 96.9 0.00062 2.1E-08 53.2 3.5 23 3-25 12-34 (195)
396 2q6t_A DNAB replication FORK h 96.9 0.0041 1.4E-07 56.4 9.4 35 4-38 202-237 (444)
397 3t1o_A Gliding protein MGLA; G 96.9 0.00071 2.4E-08 53.1 3.8 25 3-27 15-39 (198)
398 3cf0_A Transitional endoplasmi 96.9 0.00055 1.9E-08 58.9 3.3 25 3-27 50-74 (301)
399 2g6b_A RAS-related protein RAB 96.8 0.00068 2.3E-08 52.6 3.5 23 3-25 11-33 (180)
400 1r8s_A ADP-ribosylation factor 96.8 0.00066 2.3E-08 51.8 3.3 21 4-24 2-22 (164)
401 1ak2_A Adenylate kinase isoenz 96.8 0.00066 2.2E-08 56.0 3.5 24 3-26 17-40 (233)
402 2bme_A RAB4A, RAS-related prot 96.8 0.00065 2.2E-08 53.1 3.2 23 3-25 11-33 (186)
403 3pfi_A Holliday junction ATP-d 96.8 0.0028 9.6E-08 54.8 7.6 23 4-26 57-79 (338)
404 1ksh_A ARF-like protein 2; sma 96.8 0.00068 2.3E-08 53.1 3.3 23 3-25 19-41 (186)
405 1m7b_A RND3/RHOE small GTP-bin 96.8 0.00066 2.2E-08 53.3 3.2 24 2-25 7-30 (184)
406 3kkq_A RAS-related protein M-R 96.8 0.00076 2.6E-08 52.6 3.5 23 3-25 19-41 (183)
407 2efe_B Small GTP-binding prote 96.8 0.0008 2.7E-08 52.2 3.6 23 3-25 13-35 (181)
408 2gf0_A GTP-binding protein DI- 96.8 0.00079 2.7E-08 53.2 3.6 22 3-24 9-30 (199)
409 1vg8_A RAS-related protein RAB 96.8 0.00078 2.7E-08 53.6 3.6 23 3-25 9-31 (207)
410 1jbk_A CLPB protein; beta barr 96.8 0.00076 2.6E-08 52.4 3.4 24 4-27 45-68 (195)
411 2gf9_A RAS-related protein RAB 96.8 0.00074 2.5E-08 53.2 3.3 23 3-25 23-45 (189)
412 4b4t_I 26S protease regulatory 96.8 0.011 3.7E-07 53.7 11.3 25 3-27 217-241 (437)
413 1zj6_A ADP-ribosylation factor 96.8 0.00086 2.9E-08 52.7 3.6 22 3-24 17-38 (187)
414 1mh1_A RAC1; GTP-binding, GTPa 96.8 0.00087 3E-08 52.1 3.5 23 3-25 6-28 (186)
415 2xtp_A GTPase IMAP family memb 96.8 0.00084 2.9E-08 56.1 3.6 23 3-25 23-45 (260)
416 3tkl_A RAS-related protein RAB 96.8 0.00086 2.9E-08 52.8 3.5 23 3-25 17-39 (196)
417 2fg5_A RAB-22B, RAS-related pr 96.7 0.00086 2.9E-08 53.1 3.5 23 3-25 24-46 (192)
418 4dcu_A GTP-binding protein ENG 96.7 0.0079 2.7E-07 54.7 10.2 156 2-237 195-356 (456)
419 4edh_A DTMP kinase, thymidylat 96.7 0.00098 3.3E-08 54.8 3.7 33 3-35 7-39 (213)
420 3dz8_A RAS-related protein RAB 96.7 0.00095 3.3E-08 52.7 3.5 23 3-25 24-46 (191)
421 2h17_A ADP-ribosylation factor 96.7 0.00082 2.8E-08 52.6 3.1 24 2-25 21-44 (181)
422 1zbd_A Rabphilin-3A; G protein 96.7 0.00097 3.3E-08 53.1 3.5 23 3-25 9-31 (203)
423 3t5d_A Septin-7; GTP-binding p 96.7 0.00074 2.5E-08 57.2 2.9 24 2-25 8-31 (274)
424 3cbq_A GTP-binding protein REM 96.7 0.00064 2.2E-08 54.4 2.4 23 3-25 24-46 (195)
425 1z06_A RAS-related protein RAB 96.7 0.001 3.5E-08 52.4 3.6 23 3-25 21-43 (189)
426 3t5g_A GTP-binding protein RHE 96.7 0.0009 3.1E-08 52.1 3.2 22 3-24 7-28 (181)
427 3a1s_A Iron(II) transport prot 96.7 0.00091 3.1E-08 56.4 3.4 23 3-25 6-28 (258)
428 3bwd_D RAC-like GTP-binding pr 96.7 0.001 3.4E-08 51.7 3.5 23 3-25 9-31 (182)
429 1x3s_A RAS-related protein RAB 96.7 0.00095 3.2E-08 52.4 3.3 23 3-25 16-38 (195)
430 3foz_A TRNA delta(2)-isopenten 96.7 0.001 3.6E-08 58.0 3.8 25 2-26 10-34 (316)
431 3oes_A GTPase rhebl1; small GT 96.7 0.00097 3.3E-08 53.2 3.4 23 3-25 25-47 (201)
432 2p5s_A RAS and EF-hand domain 96.7 0.0011 3.6E-08 52.9 3.6 23 3-25 29-51 (199)
433 2a5j_A RAS-related protein RAB 96.7 0.001 3.5E-08 52.5 3.5 23 3-25 22-44 (191)
434 2h57_A ADP-ribosylation factor 96.7 0.00071 2.4E-08 53.4 2.5 23 3-25 22-44 (190)
435 1njg_A DNA polymerase III subu 96.7 0.00096 3.3E-08 53.7 3.3 25 4-28 47-71 (250)
436 1zd9_A ADP-ribosylation factor 96.7 0.00098 3.3E-08 52.6 3.3 23 3-25 23-45 (188)
437 2dby_A GTP-binding protein; GD 96.7 0.00079 2.7E-08 60.0 3.0 23 3-25 2-24 (368)
438 2p65_A Hypothetical protein PF 96.7 0.00089 3E-08 52.0 3.0 25 4-28 45-69 (187)
439 4ad8_A DNA repair protein RECN 96.7 0.00028 9.7E-09 65.4 0.1 22 4-25 62-83 (517)
440 2atv_A RERG, RAS-like estrogen 96.7 0.0011 3.9E-08 52.5 3.7 23 3-25 29-51 (196)
441 2ga8_A Hypothetical 39.9 kDa p 96.7 0.00095 3.3E-08 59.2 3.4 25 3-27 25-49 (359)
442 2bcg_Y Protein YP2, GTP-bindin 96.7 0.0011 3.6E-08 53.0 3.4 23 3-25 9-31 (206)
443 3cph_A RAS-related protein SEC 96.7 0.0011 3.9E-08 52.9 3.6 23 3-25 21-43 (213)
444 2qu8_A Putative nucleolar GTP- 96.7 0.001 3.5E-08 54.4 3.4 23 3-25 30-52 (228)
445 3reg_A RHO-like small GTPase; 96.7 0.0011 3.6E-08 52.5 3.3 23 3-25 24-46 (194)
446 2ew1_A RAS-related protein RAB 96.7 0.0011 3.7E-08 53.5 3.4 23 3-25 27-49 (201)
447 2cjw_A GTP-binding protein GEM 96.7 0.0011 3.9E-08 52.7 3.5 23 3-25 7-29 (192)
448 1w5s_A Origin recognition comp 96.6 0.0017 5.8E-08 57.3 4.9 24 4-27 52-77 (412)
449 2o52_A RAS-related protein RAB 96.6 0.0011 3.8E-08 53.0 3.4 23 3-25 26-48 (200)
450 3te6_A Regulatory protein SIR3 96.6 0.015 5E-07 50.8 10.7 24 4-27 47-70 (318)
451 3iev_A GTP-binding protein ERA 96.6 0.0011 3.7E-08 57.4 3.4 23 3-25 11-33 (308)
452 2iwr_A Centaurin gamma 1; ANK 96.6 0.00087 3E-08 52.0 2.5 23 3-25 8-30 (178)
453 2il1_A RAB12; G-protein, GDP, 96.6 0.00094 3.2E-08 52.9 2.8 22 3-24 27-48 (192)
454 1gwn_A RHO-related GTP-binding 96.6 0.0011 3.8E-08 53.5 3.2 23 3-25 29-51 (205)
455 2fv8_A H6, RHO-related GTP-bin 96.6 0.0011 3.9E-08 53.1 3.3 23 3-25 26-48 (207)
456 2fh5_B SR-beta, signal recogni 96.6 0.0012 4.1E-08 53.1 3.3 25 2-26 7-31 (214)
457 1wf3_A GTP-binding protein; GT 96.6 0.001 3.6E-08 57.4 3.2 23 3-25 8-30 (301)
458 2bjv_A PSP operon transcriptio 96.6 0.0021 7.3E-08 53.7 5.0 32 4-35 31-62 (265)
459 4bas_A ADP-ribosylation factor 96.6 0.0011 3.7E-08 52.4 2.9 23 3-25 18-40 (199)
460 3exa_A TRNA delta(2)-isopenten 96.6 0.0016 5.4E-08 56.9 4.1 25 2-26 3-27 (322)
461 2q3h_A RAS homolog gene family 96.6 0.0014 4.8E-08 52.0 3.6 23 3-25 21-43 (201)
462 3c5c_A RAS-like protein 12; GD 96.6 0.0014 4.8E-08 51.7 3.6 23 3-25 22-44 (187)
463 1tue_A Replication protein E1; 96.6 0.00089 3E-08 55.1 2.4 23 4-26 60-82 (212)
464 2b6h_A ADP-ribosylation factor 96.6 0.0011 3.9E-08 52.6 3.0 22 3-24 30-51 (192)
465 1g3q_A MIND ATPase, cell divis 96.6 0.0068 2.3E-07 49.4 7.8 42 1-42 1-43 (237)
466 1jwy_B Dynamin A GTPase domain 96.5 0.0012 4E-08 56.7 3.1 24 3-26 25-48 (315)
467 4hlc_A DTMP kinase, thymidylat 96.5 0.0017 6E-08 52.9 4.0 34 1-35 1-34 (205)
468 2gco_A H9, RHO-related GTP-bin 96.5 0.0014 4.7E-08 52.4 3.2 23 3-25 26-48 (201)
469 2j1l_A RHO-related GTP-binding 96.5 0.0014 4.7E-08 53.0 3.2 22 3-24 35-56 (214)
470 3zvl_A Bifunctional polynucleo 96.5 0.0013 4.5E-08 59.4 3.4 24 3-26 259-282 (416)
471 2f7s_A C25KG, RAS-related prot 96.5 0.0015 5.2E-08 52.5 3.5 24 3-26 26-49 (217)
472 2fu5_C RAS-related protein RAB 96.5 0.00087 3E-08 52.3 2.0 22 3-24 9-30 (183)
473 3cmw_A Protein RECA, recombina 96.5 0.0061 2.1E-07 63.8 8.7 34 4-37 734-767 (1706)
474 3u61_B DNA polymerase accessor 96.5 0.014 4.8E-07 50.1 9.8 24 3-26 49-72 (324)
475 3llu_A RAS-related GTP-binding 96.5 0.0017 5.8E-08 51.6 3.6 25 2-26 20-44 (196)
476 3cio_A ETK, tyrosine-protein k 96.5 0.01 3.6E-07 51.0 8.8 40 3-42 105-145 (299)
477 3gmt_A Adenylate kinase; ssgci 96.5 0.0014 4.9E-08 54.6 3.2 23 4-26 10-32 (230)
478 4i1u_A Dephospho-COA kinase; s 96.5 0.0018 6E-08 53.3 3.6 24 2-25 9-32 (210)
479 2atx_A Small GTP binding prote 96.5 0.0017 5.9E-08 51.2 3.5 23 3-25 19-41 (194)
480 4gzl_A RAS-related C3 botulinu 96.4 0.0018 6.2E-08 51.9 3.5 23 3-25 31-53 (204)
481 3a8t_A Adenylate isopentenyltr 96.4 0.0022 7.5E-08 56.5 4.2 25 3-27 41-65 (339)
482 2ocp_A DGK, deoxyguanosine kin 96.4 0.0018 6E-08 53.6 3.3 25 3-27 3-27 (241)
483 3cmu_A Protein RECA, recombina 96.4 0.012 4E-07 62.6 10.1 118 3-138 1082-1216(2050)
484 4tmk_A Protein (thymidylate ki 96.4 0.0016 5.3E-08 53.6 2.9 28 3-30 4-31 (213)
485 4djt_A GTP-binding nuclear pro 96.4 0.00073 2.5E-08 54.5 0.9 23 2-24 11-33 (218)
486 2hup_A RAS-related protein RAB 96.4 0.002 6.8E-08 51.6 3.5 23 3-25 30-52 (201)
487 1h65_A Chloroplast outer envel 96.4 0.0019 6.4E-08 54.5 3.5 23 3-25 40-62 (270)
488 3cnl_A YLQF, putative uncharac 96.4 0.002 6.9E-08 54.6 3.6 24 4-27 101-124 (262)
489 2axn_A 6-phosphofructo-2-kinas 96.4 0.0015 5.3E-08 60.7 3.1 26 2-27 35-60 (520)
490 3lv8_A DTMP kinase, thymidylat 96.4 0.0016 5.4E-08 54.5 2.9 30 3-32 28-57 (236)
491 1qvr_A CLPB protein; coiled co 96.4 0.0044 1.5E-07 60.9 6.4 33 4-36 590-622 (854)
492 1p5z_B DCK, deoxycytidine kina 96.4 0.0012 4.1E-08 55.4 2.1 25 3-27 25-49 (263)
493 2x77_A ADP-ribosylation factor 96.4 0.0012 4.2E-08 51.8 2.0 22 3-24 23-44 (189)
494 4dzz_A Plasmid partitioning pr 96.4 0.0087 3E-07 47.6 7.1 41 1-41 1-41 (206)
495 3bfv_A CAPA1, CAPB2, membrane 96.3 0.0053 1.8E-07 52.1 6.0 40 3-42 83-123 (271)
496 3cf2_A TER ATPase, transitiona 96.3 0.0053 1.8E-07 59.9 6.6 25 3-27 239-263 (806)
497 3cpj_B GTP-binding protein YPT 96.3 0.0024 8.2E-08 51.9 3.6 23 3-25 14-36 (223)
498 2g3y_A GTP-binding protein GEM 96.3 0.0024 8.1E-08 52.2 3.5 23 3-25 38-60 (211)
499 3q3j_B RHO-related GTP-binding 96.3 0.0025 8.5E-08 51.6 3.6 24 2-25 27-50 (214)
500 3t15_A Ribulose bisphosphate c 96.3 0.0021 7.1E-08 55.1 3.3 24 3-26 37-60 (293)
No 1
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.96 E-value=5.1e-30 Score=222.42 Aligned_cols=160 Identities=13% Similarity=0.127 Sum_probs=124.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC---------CCCCC-CC-------CCChhhhhh-------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------ENFDY-PV-------AMDIRELIS------- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~---------~~~~~-~~-------~~~i~~~i~------- 58 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| +| ..++++++.
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~ 114 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMK 114 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTSC
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHcC
Confidence 3689999999999999999999999999999999987621 12333 22 346776653
Q ss_pred ---------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 026486 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (238)
Q Consensus 59 ---------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l 126 (238)
++++++.+|+....... ...++++++ ++||++++. +|++||+||||+ ||+.++..++ ++++++
T Consensus 115 ~~~~~~~~~~~~~l~~~~L~~~~~~~--~~~LSgGqkQRv~iAraL~~--~P~lLlLDEPts~LD~~~~~~i~-~~l~~l 189 (275)
T 3gfo_A 115 LPEDEIRKRVDNALKRTGIEHLKDKP--THCLSFGQKKRVAIAGVLVM--EPKVLILDEPTAGLDPMGVSEIM-KLLVEM 189 (275)
T ss_dssp CCHHHHHHHHHHHHHHTTCGGGTTSB--GGGSCHHHHHHHHHHHHHTT--CCSEEEEECTTTTCCHHHHHHHH-HHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCchhhcCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEECccccCCHHHHHHHH-HHHHHH
Confidence 56788999997543322 235666654 999999999 999999999999 9999999999 999999
Q ss_pred H-hCCCeEEEEEecccccccchhHHHhhhHHHHHHHHhhcCCeeee
Q 026486 127 K-SRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNI 171 (238)
Q Consensus 127 ~-~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~~~p~~~v 171 (238)
+ ++|.|+|++ +|.+.....+++.+++...|.+....++-.+
T Consensus 190 ~~~~g~tvi~v----tHdl~~~~~~~drv~~l~~G~i~~~g~~~~~ 231 (275)
T 3gfo_A 190 QKELGITIIIA----THDIDIVPLYCDNVFVMKEGRVILQGNPKEV 231 (275)
T ss_dssp HHHHCCEEEEE----ESCCSSGGGGCSEEEEEETTEEEEEECHHHH
T ss_pred HhhCCCEEEEE----ecCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 7 558999888 4888888888887766666655544444333
No 2
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.95 E-value=5e-29 Score=223.44 Aligned_cols=163 Identities=12% Similarity=0.158 Sum_probs=132.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC----------CCCCC-------CCCCChhhhhh-------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-------PVAMDIRELIS------- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~----------~~~~~-------~~~~~i~~~i~------- 58 (238)
-+++|+||||||||||+|+|+|+++|++|+|.++|.++.. ..++| .+..++++++.
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~ 134 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDN 134 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSC
T ss_pred CEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcC
Confidence 3689999999999999999999999999999999987642 22333 34567888764
Q ss_pred ---------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 026486 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (238)
Q Consensus 59 ---------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l 126 (238)
+.++++.+|+....... . ..++++++ ++|||||+. +|++||+||||+ ||+.++..++ ++++++
T Consensus 135 ~~~~~~~~~v~~lL~~vgL~~~~~~~-~-~~LSGGqkQRVaIArAL~~--~P~lLLlDEPTs~LD~~~~~~i~-~lL~~l 209 (366)
T 3tui_C 135 TPKDEVKRRVTELLSLVGLGDKHDSY-P-SNLSGGQKQRVAIARALAS--NPKVLLCDQATSALDPATTRSIL-ELLKDI 209 (366)
T ss_dssp CCHHHHHHHHHHHHHHHTCGGGTTCC-T-TTSCHHHHHHHHHHHHTTT--CCSEEEEESTTTTSCHHHHHHHH-HHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCchHhcCC-h-hhCCHHHHHHHHHHHHHhc--CCCEEEEECCCccCCHHHHHHHH-HHHHHH
Confidence 66789999997643322 2 34666654 999999999 999999999999 9999999999 999999
Q ss_pred Hh-CCCeEEEEEecccccccchhHHHhhhHHHHHHHHhhcCCeeeeecc
Q 026486 127 KS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSK 174 (238)
Q Consensus 127 ~~-~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~~~p~~~vlsk 174 (238)
++ .|.|+++| +|.+.....+++++++...|.+....+.-.+++.
T Consensus 210 ~~~~g~Tii~v----THdl~~~~~~aDrv~vl~~G~iv~~g~~~ev~~~ 254 (366)
T 3tui_C 210 NRRLGLTILLI----THEMDVVKRICDCVAVISNGELIEQDTVSEVFSH 254 (366)
T ss_dssp HHHSCCEEEEE----ESCHHHHHHHCSEEEEEETTEEEECCBHHHHHSS
T ss_pred HHhCCCEEEEE----ecCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 75 59999888 4999988999998888888887777776666654
No 3
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.95 E-value=1.8e-28 Score=208.12 Aligned_cols=147 Identities=17% Similarity=0.171 Sum_probs=111.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-----------CCCCC-------CCCCChhhhhh------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-------PVAMDIRELIS------ 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-----------~~~~~-------~~~~~i~~~i~------ 58 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| .+.+++++++.
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~ 111 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFK 111 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTC
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhh
Confidence 3689999999999999999999999999999999987532 11333 33457777653
Q ss_pred -------------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHH
Q 026486 59 -------------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (238)
Q Consensus 59 -------------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~l 122 (238)
+.++++.+++.+.....+ ...++++++ ++||++++. +|+++|+||||+ ||+.++..++ ++
T Consensus 112 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~LSgGq~QRv~iAral~~--~p~llllDEPts~LD~~~~~~i~-~~ 187 (235)
T 3tif_A 112 YRGAMSGEERRKRALECLKMAELEERFANHK-PNQLSGGQQQRVAIARALAN--NPPIILADQPTWALDSKTGEKIM-QL 187 (235)
T ss_dssp SSSCCCHHHHHHHHHHHHHHTTCCGGGTTCC-GGGSCHHHHHHHHHHHHHTT--CCSEEEEESTTTTSCHHHHHHHH-HH
T ss_pred hccCCCHHHHHHHHHHHHHHCCCChhhhhCC-hhhCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HH
Confidence 456788888865321111 245666654 999999999 999999999999 9999999999 99
Q ss_pred HHHHHhC-CCeEEEEEecccccccchhHHHhhhHHHH
Q 026486 123 VDHLKSR-NFNVCAVYLLDSQFITDVTKFISGCMASL 158 (238)
Q Consensus 123 l~~l~~~-~~tvi~v~l~d~~~~~d~~~~~~~~l~~~ 158 (238)
+++++++ |.|+|+| +|.+. ...+++.+++..
T Consensus 188 l~~l~~~~g~tvi~v----tHd~~-~~~~~d~i~~l~ 219 (235)
T 3tif_A 188 LKKLNEEDGKTVVVV----THDIN-VARFGERIIYLK 219 (235)
T ss_dssp HHHHHHHHCCEEEEE----CSCHH-HHTTSSEEEEEE
T ss_pred HHHHHHHcCCEEEEE----cCCHH-HHHhCCEEEEEE
Confidence 9999754 8999888 47765 345555444433
No 4
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.95 E-value=1.3e-28 Score=209.60 Aligned_cols=150 Identities=16% Similarity=0.234 Sum_probs=116.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCC-----CCCCCC-C------CCCChhhhhh-------------
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----AENFDY-P------VAMDIRELIS------------- 58 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~-----~~~~~~-~------~~~~i~~~i~------------- 58 (238)
+++|+||||||||||+++|+|+++|++|+|.++|.++. ...++| + +.+++++++.
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~ 105 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDR 105 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHHHHHHHHHcCCchHHH
Confidence 68999999999999999999999999999999997753 123444 2 2356776653
Q ss_pred -HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CCCeE
Q 026486 59 -LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNV 133 (238)
Q Consensus 59 -~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~~tv 133 (238)
++++++.+|+.+..... ...+++|++ ++||++++. +|+++|+||||+ ||+.++..++ ++++++++ .|.++
T Consensus 106 ~~~~~l~~~~l~~~~~~~--~~~LSgGqkqRv~lAral~~--~p~lllLDEPts~LD~~~~~~~~-~~l~~l~~~~g~tv 180 (240)
T 2onk_A 106 RVREMAEKLGIAHLLDRK--PARLSGGERQRVALARALVI--QPRLLLLDEPLSAVDLKTKGVLM-EELRFVQREFDVPI 180 (240)
T ss_dssp HHHHHHHTTTCTTTTTCC--GGGSCHHHHHHHHHHHHHTT--CCSSBEEESTTSSCCHHHHHHHH-HHHHHHHHHHTCCE
T ss_pred HHHHHHHHcCCHHHhcCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCCEE
Confidence 45688889987643322 235666654 899999999 999999999999 9999999999 99999865 48899
Q ss_pred EEEEecccccccchhHHHhhhHHHHHHHH
Q 026486 134 CAVYLLDSQFITDVTKFISGCMASLSAMV 162 (238)
Q Consensus 134 i~v~l~d~~~~~d~~~~~~~~l~~~~~~~ 162 (238)
+++ +|.+.+...+++.+++...+.+
T Consensus 181 i~v----tHd~~~~~~~~d~i~~l~~G~i 205 (240)
T 2onk_A 181 LHV----THDLIEAAMLADEVAVMLNGRI 205 (240)
T ss_dssp EEE----ESCHHHHHHHCSEEEEEETTEE
T ss_pred EEE----eCCHHHHHHhCCEEEEEECCEE
Confidence 888 4888777777776655444443
No 5
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.95 E-value=2.9e-28 Score=218.20 Aligned_cols=157 Identities=14% Similarity=0.147 Sum_probs=123.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCC---------CCCCCC-------CCCCChhhhhh--------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA---------AENFDY-------PVAMDIRELIS-------- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~---------~~~~~~-------~~~~~i~~~i~-------- 58 (238)
-+++|+||||||||||+|+|+|+++|++|+|.++|.++. .+.++| ++.+++++++.
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~ 110 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKG 110 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTSSC
T ss_pred CEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHcCC
Confidence 368999999999999999999999999999999997651 122333 44668888774
Q ss_pred --------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH-
Q 026486 59 --------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL- 126 (238)
Q Consensus 59 --------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l- 126 (238)
++++++.+|+.+...... ..++++++ ++|||+|+. +|++||||||++ ||+..+..+. +.+.++
T Consensus 111 ~~~~~~~~v~~~l~~~gL~~~~~r~~--~~LSGGq~QRValArAL~~--~P~lLLLDEPts~LD~~~r~~l~-~~l~~~~ 185 (359)
T 3fvq_A 111 RTAQERQRIEAMLELTGISELAGRYP--HELSGGQQQRAALARALAP--DPELILLDEPFSALDEQLRRQIR-EDMIAAL 185 (359)
T ss_dssp CSHHHHHHHHHHHHHHTCGGGTTSCG--GGSCHHHHHHHHHHHHHTT--CCSEEEEESTTTTSCHHHHHHHH-HHHHHHH
T ss_pred ChHHHHHHHHHHHHHcCCchHhcCCh--hhCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHH
Confidence 678899999986543332 35666654 999999999 999999999999 9999999998 656555
Q ss_pred HhCCCeEEEEEecccccccchhHHHhhhHHHHHHHHhhcCCe
Q 026486 127 KSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPH 168 (238)
Q Consensus 127 ~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~~~p~ 168 (238)
++.|.|+|+| +|.+.+...++++++++..|.+....++
T Consensus 186 ~~~g~tvi~v----THd~~ea~~~aDri~vl~~G~i~~~g~~ 223 (359)
T 3fvq_A 186 RANGKSAVFV----SHDREEALQYADRIAVMKQGRILQTASP 223 (359)
T ss_dssp HHTTCEEEEE----CCCHHHHHHHCSEEEEEETTEEEEEECH
T ss_pred HhCCCEEEEE----eCCHHHHHHHCCEEEEEECCEEEEEeCH
Confidence 4579999888 5999888888887766666655444444
No 6
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.95 E-value=4.3e-28 Score=204.26 Aligned_cols=142 Identities=18% Similarity=0.149 Sum_probs=109.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-----------CCCCC-------CCCCChhhhhh-------
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-------PVAMDIRELIS------- 58 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-----------~~~~~-------~~~~~i~~~i~------- 58 (238)
+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| .+..++++++.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~ 111 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMG 111 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHcC
Confidence 689999999999999999999999999999999977532 12333 23457777653
Q ss_pred ---------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 026486 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (238)
Q Consensus 59 ---------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l 126 (238)
+.++++.+|+.+..... ...++++++ ++||++++. +|+++|+||||+ ||+.++..++ ++++++
T Consensus 112 ~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgGq~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~~~-~~l~~l 186 (224)
T 2pcj_A 112 KPKKEAKERGEYLLSELGLGDKLSRK--PYELSGGEQQRVAIARALAN--EPILLFADEPTGNLDSANTKRVM-DIFLKI 186 (224)
T ss_dssp CCHHHHHHHHHHHHHHTTCTTCTTCC--GGGSCHHHHHHHHHHHHTTT--CCSEEEEESTTTTCCHHHHHHHH-HHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCchhhhCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEeCCCCCCCHHHHHHHH-HHHHHH
Confidence 45678889997653322 235666654 899999999 999999999999 9999999999 999999
Q ss_pred HhCCCeEEEEEecccccccchhHHHhhhH
Q 026486 127 KSRNFNVCAVYLLDSQFITDVTKFISGCM 155 (238)
Q Consensus 127 ~~~~~tvi~v~l~d~~~~~d~~~~~~~~l 155 (238)
+++|.+++++ +|..... .+++.++
T Consensus 187 ~~~g~tvi~v----tHd~~~~-~~~d~v~ 210 (224)
T 2pcj_A 187 NEGGTSIVMV----THERELA-ELTHRTL 210 (224)
T ss_dssp HHTTCEEEEE----CSCHHHH-TTSSEEE
T ss_pred HHCCCEEEEE----cCCHHHH-HhCCEEE
Confidence 7678888877 4765543 4444433
No 7
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.95 E-value=3.5e-28 Score=209.59 Aligned_cols=147 Identities=18% Similarity=0.220 Sum_probs=113.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCC--C-------CCCCC-------CCCCChhhhhh--------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--A-------ENFDY-------PVAMDIRELIS-------- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~--~-------~~~~~-------~~~~~i~~~i~-------- 58 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.++. . ..++| ++.+++++++.
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~ 130 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRK 130 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTSC
T ss_pred CEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHcC
Confidence 368999999999999999999999999999999998763 1 11233 23456766653
Q ss_pred ---------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 026486 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (238)
Q Consensus 59 ---------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l 126 (238)
++++++.+++.+..... ...++++++ ++||++++. +|+++||||||+ ||+.++..++ ++++++
T Consensus 131 ~~~~~~~~~~~~~l~~~~L~~~~~~~--~~~LSgGqkQRv~lAraL~~--~p~lllLDEPts~LD~~~~~~~~-~~l~~l 205 (263)
T 2olj_A 131 WPREKAEAKAMELLDKVGLKDKAHAY--PDSLSGGQAQRVAIARALAM--EPKIMLFDEPTSALDPEMVGEVL-SVMKQL 205 (263)
T ss_dssp CCHHHHHHHHHHHHHHTTCGGGTTSC--GGGSCHHHHHHHHHHHHHTT--CCSEEEEESTTTTSCHHHHHHHH-HHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCchHhcCC--hhhCCHHHHHHHHHHHHHHC--CCCEEEEeCCcccCCHHHHHHHH-HHHHHH
Confidence 35678888886543222 235666654 899999999 999999999999 9999999999 999999
Q ss_pred HhCCCeEEEEEecccccccchhHHHhhhHHHH
Q 026486 127 KSRNFNVCAVYLLDSQFITDVTKFISGCMASL 158 (238)
Q Consensus 127 ~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~ 158 (238)
+++|.+++++ +|.+.....+++.+++..
T Consensus 206 ~~~g~tvi~v----tHd~~~~~~~~d~v~~l~ 233 (263)
T 2olj_A 206 ANEGMTMVVV----THEMGFAREVGDRVLFMD 233 (263)
T ss_dssp HHTTCEEEEE----CSCHHHHHHHCSEEEEEE
T ss_pred HhCCCEEEEE----cCCHHHHHHhCCEEEEEE
Confidence 7678888877 588877777777554433
No 8
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.95 E-value=2.5e-28 Score=220.08 Aligned_cols=157 Identities=14% Similarity=0.073 Sum_probs=124.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-----CCC-------CCCCCCChhhhhh------------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENF-------DYPVAMDIRELIS------------ 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-----~~~-------~~~~~~~i~~~i~------------ 58 (238)
-+++|+||||||||||+|+|+|+++|++|+|.++|.++.. ..+ ..++.+++++++.
T Consensus 30 e~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~ 109 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEV 109 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHTTCCHHH
T ss_pred CEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHcCCCHHH
Confidence 3689999999999999999999999999999999987532 222 2345678888774
Q ss_pred ----HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CC
Q 026486 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RN 130 (238)
Q Consensus 59 ----~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~ 130 (238)
++++++.+++.+...... ..++++++ ++|||+|+. +|++|||||||+ ||+..+..+. ++++++++ .|
T Consensus 110 ~~~~v~~~l~~~~L~~~~~r~p--~~LSGGqrQRVaiArAL~~--~P~lLLLDEPts~LD~~~~~~l~-~~l~~l~~~~g 184 (381)
T 3rlf_A 110 INQRVNQVAEVLQLAHLLDRKP--KALSGGQRQRVAIGRTLVA--EPSVFLLDEPLSNLDAALRVQMR-IEISRLHKRLG 184 (381)
T ss_dssp HHHHHHHHHHHTTCGGGTTCCG--GGSCHHHHHHHHHHHHHHH--CCSEEEEESTTTTSCHHHHHHHH-HHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCchhhcCCh--hHCCHHHHHHHHHHHHHHc--CCCEEEEECCCcCCCHHHHHHHH-HHHHHHHHhCC
Confidence 667899999976543322 35666654 999999999 999999999998 9999999999 89999875 49
Q ss_pred CeEEEEEecccccccchhHHHhhhHHHHHHHHhhcCCe
Q 026486 131 FNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPH 168 (238)
Q Consensus 131 ~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~~~p~ 168 (238)
.|+|+| +|.+.+...+++.++++..|.+....++
T Consensus 185 ~tii~v----THd~~ea~~~aDri~vl~~G~i~~~g~~ 218 (381)
T 3rlf_A 185 RTMIYV----THDQVEAMTLADKIVVLDAGRVAQVGKP 218 (381)
T ss_dssp CEEEEE----CSCHHHHHHHCSEEEEEETTEEEEEECH
T ss_pred CEEEEE----ECCHHHHHHhCCEEEEEECCEEEEEeCH
Confidence 999888 5999888888887766666555443333
No 9
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.95 E-value=2.6e-28 Score=210.28 Aligned_cols=149 Identities=17% Similarity=0.181 Sum_probs=114.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC--------------------CCCCC-------CCCCChhh
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------------------ENFDY-------PVAMDIRE 55 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~--------------------~~~~~-------~~~~~i~~ 55 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| ++.+++++
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e 112 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLE 112 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChhhHHHHhcceEEEecCcccCCCCcHHH
Confidence 3689999999999999999999999999999999977530 11233 33456766
Q ss_pred hhh-----------------HHHHHHHcCCCCC-CchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHh
Q 026486 56 LIS-----------------LEDVMEELGLGPN-GGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFT 114 (238)
Q Consensus 56 ~i~-----------------~~~~l~~~~l~~~-~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~ 114 (238)
++. +.++++.+|+.+. .... ...++++++ ++||++++. +|+++|+||||+ ||+.+
T Consensus 113 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~--~~~LSgGq~qRv~lAraL~~--~p~lllLDEPts~LD~~~ 188 (262)
T 1b0u_A 113 NVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKY--PVHLSGGQQQRVSIARALAM--EPDVLLFDEPTSALDPEL 188 (262)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSC--GGGSCHHHHHHHHHHHHHHT--CCSEEEEESTTTTSCHHH
T ss_pred HHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCC--cccCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHH
Confidence 653 3467888888653 2221 235666654 999999999 999999999999 99999
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEEecccccccchhHHHhhhHHHHHH
Q 026486 115 HVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSA 160 (238)
Q Consensus 115 ~~~~~~~ll~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~ 160 (238)
+..++ +++++++++|.++|++ +|.+.....+++.+++...+
T Consensus 189 ~~~~~-~~l~~l~~~g~tvi~v----tHd~~~~~~~~d~v~~l~~G 229 (262)
T 1b0u_A 189 VGEVL-RIMQQLAEEGKTMVVV----THEMGFARHVSSHVIFLHQG 229 (262)
T ss_dssp HHHHH-HHHHHHHHTTCCEEEE----CSCHHHHHHHCSEEEEEETT
T ss_pred HHHHH-HHHHHHHhCCCEEEEE----eCCHHHHHHhCCEEEEEECC
Confidence 99999 9999997678899887 58888777777755544333
No 10
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.95 E-value=5.5e-28 Score=207.58 Aligned_cols=145 Identities=15% Similarity=0.173 Sum_probs=112.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC------CCCCC-------CCCCChhhhhh-----------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS----------- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~------~~~~~-------~~~~~i~~~i~----------- 58 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| ++.+++++++.
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~ 121 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSS 121 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHH
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHcCCChH
Confidence 3689999999999999999999999999999999987632 12333 23456777653
Q ss_pred -----HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCC
Q 026486 59 -----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN 130 (238)
Q Consensus 59 -----~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~ 130 (238)
++++++.+|+.+..... ...++++++ ++||++++. +|+++||||||+ ||+.++..++ +++++++++|
T Consensus 122 ~~~~~~~~~l~~~gL~~~~~~~--~~~LSgGq~qRv~lAraL~~--~p~lllLDEPts~LD~~~~~~l~-~~l~~l~~~g 196 (256)
T 1vpl_A 122 EIEEMVERATEIAGLGEKIKDR--VSTYSKGMVRKLLIARALMV--NPRLAILDEPTSGLDVLNAREVR-KILKQASQEG 196 (256)
T ss_dssp HHHHHHHHHHHHHCCGGGGGSB--GGGCCHHHHHHHHHHHHHTT--CCSEEEEESTTTTCCHHHHHHHH-HHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCchHhcCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEeCCccccCHHHHHHHH-HHHHHHHhCC
Confidence 45678888887543222 235666654 899999999 999999999999 9999999999 9999997678
Q ss_pred CeEEEEEecccccccchhHHHhhhHH
Q 026486 131 FNVCAVYLLDSQFITDVTKFISGCMA 156 (238)
Q Consensus 131 ~tvi~v~l~d~~~~~d~~~~~~~~l~ 156 (238)
.+++++ +|.+.....+++.+++
T Consensus 197 ~tiiiv----tHd~~~~~~~~d~v~~ 218 (256)
T 1vpl_A 197 LTILVS----SHNMLEVEFLCDRIAL 218 (256)
T ss_dssp CEEEEE----ECCHHHHTTTCSEEEE
T ss_pred CEEEEE----cCCHHHHHHHCCEEEE
Confidence 888877 4777666666664443
No 11
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.94 E-value=7.6e-28 Score=207.80 Aligned_cols=158 Identities=18% Similarity=0.212 Sum_probs=120.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCCC-------CCC-------CCCCCChhhhhh----------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE-------NFD-------YPVAMDIRELIS---------- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~-------~~~-------~~~~~~i~~~i~---------- 58 (238)
-+++|+||||||||||+|+|+|+++|++|+|.++|.++... .++ +.+..++++++.
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~ 117 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQ 117 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTSCSTT
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhcCcHH
Confidence 36899999999999999999999999999999999876431 112 223456777653
Q ss_pred ----HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhcc----CCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 026486 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNY----LDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (238)
Q Consensus 59 ----~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~----~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~ 127 (238)
++++++.+++....... ...++++++ ++||++++.. .+|++||+||||+ ||+.++..++ +++++++
T Consensus 118 ~~~~~~~~l~~~~l~~~~~~~--~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~-~~l~~l~ 194 (266)
T 4g1u_C 118 DRQALQQVMAQTDCLALAQRD--YRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTL-RLLRQLT 194 (266)
T ss_dssp HHHHHHHHHHHTTCSTTTTSB--GGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHcCChhHhcCC--cccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHH-HHHHHHH
Confidence 67789999997654332 235666654 8999999851 1799999999999 9999999999 9999997
Q ss_pred hC-CCeEEEEEecccccccchhHHHhhhHHHHHHHHhhcCC
Q 026486 128 SR-NFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELP 167 (238)
Q Consensus 128 ~~-~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~~~p 167 (238)
++ +.+++++ +|.+.....+++.+++...|.+....+
T Consensus 195 ~~~~~tvi~v----tHdl~~~~~~~d~v~vl~~G~i~~~g~ 231 (266)
T 4g1u_C 195 RQEPLAVCCV----LHDLNLAALYADRIMLLAQGKLVACGT 231 (266)
T ss_dssp HHSSEEEEEE----CSCHHHHHHHCSEEEEEETTEEEEEEC
T ss_pred HcCCCEEEEE----EcCHHHHHHhCCEEEEEECCEEEEEcC
Confidence 64 5688777 598888888888766655555444333
No 12
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.94 E-value=8.1e-28 Score=215.20 Aligned_cols=151 Identities=17% Similarity=0.179 Sum_probs=119.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-----CCCCC-------CCCCChhhhhh-------------
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDY-------PVAMDIRELIS------------- 58 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-----~~~~~-------~~~~~i~~~i~------------- 58 (238)
+++|+||||||||||+|+|+|+++|++|+|.++|.++.. +.++| ++.+++++++.
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~ 122 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEM 122 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHH
Confidence 689999999999999999999999999999999977532 22333 34567887764
Q ss_pred ---HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CCC
Q 026486 59 ---LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNF 131 (238)
Q Consensus 59 ---~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~~ 131 (238)
++++++.+++.+..... ...++++++ ++||++|+. +|+++|||||++ ||+.++..+. ++++++++ .|.
T Consensus 123 ~~~v~~~l~~~gL~~~~~r~--~~~LSGGq~QRvalArAL~~--~P~lLLLDEP~s~LD~~~r~~l~-~~l~~l~~~~g~ 197 (355)
T 1z47_A 123 DARVRELLRFMRLESYANRF--PHELSGGQQQRVALARALAP--RPQVLLFDEPFAAIDTQIRRELR-TFVRQVHDEMGV 197 (355)
T ss_dssp HHHHHHHHHHTTCGGGTTSC--GGGSCHHHHHHHHHHHHHTT--CCSEEEEESTTCCSSHHHHHHHH-HHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCChhHhcCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCC
Confidence 56788899997654332 235666654 999999999 999999999999 9999999999 88898865 488
Q ss_pred eEEEEEecccccccchhHHHhhhHHHHHHHHh
Q 026486 132 NVCAVYLLDSQFITDVTKFISGCMASLSAMVQ 163 (238)
Q Consensus 132 tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~ 163 (238)
|+|+| +|...+...+++.+++...+.+.
T Consensus 198 tvi~v----THd~~~a~~~adri~vl~~G~i~ 225 (355)
T 1z47_A 198 TSVFV----THDQEEALEVADRVLVLHEGNVE 225 (355)
T ss_dssp EEEEE----CSCHHHHHHHCSEEEEEETTEEE
T ss_pred EEEEE----CCCHHHHHHhCCEEEEEECCEEE
Confidence 99888 58888888887766655555443
No 13
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.94 E-value=1.1e-27 Score=214.61 Aligned_cols=151 Identities=15% Similarity=0.109 Sum_probs=119.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-----CCCCC-------CCCCChhhhhh------------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDY-------PVAMDIRELIS------------ 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-----~~~~~-------~~~~~i~~~i~------------ 58 (238)
-+++|+||||||||||+|+|+|+++|++|+|.++|.++.. +.++| ++.+++++++.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~ 109 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRARRISKDE 109 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSSCSHHHH
T ss_pred CEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHH
Confidence 3689999999999999999999999999999999977532 22333 44567877763
Q ss_pred ----HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CC
Q 026486 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RN 130 (238)
Q Consensus 59 ----~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~ 130 (238)
++++++.+++.+...... ..++++++ ++||++++. +|+++|||||++ ||+..+..+. +.++++++ .|
T Consensus 110 ~~~~v~~~l~~~~L~~~~~r~~--~~LSgGq~QRvalArAL~~--~P~lLLLDEP~s~LD~~~r~~l~-~~l~~l~~~~g 184 (359)
T 2yyz_A 110 VEKRVVEIARKLLIDNLLDRKP--TQLSGGQQQRVALARALVK--QPKVLLFDEPLSNLDANLRMIMR-AEIKHLQQELG 184 (359)
T ss_dssp TTHHHHHHHHHTTCGGGTTSCG--GGSCHHHHHHHHHHHHHTT--CCSEEEEESTTTTSCHHHHHHHH-HHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCchHhcCCh--hhCCHHHHHHHHHHHHHHc--CCCEEEEECCcccCCHHHHHHHH-HHHHHHHHhcC
Confidence 567899999976533322 35666654 999999999 999999999999 9999999999 88888865 48
Q ss_pred CeEEEEEecccccccchhHHHhhhHHHHHHHH
Q 026486 131 FNVCAVYLLDSQFITDVTKFISGCMASLSAMV 162 (238)
Q Consensus 131 ~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~ 162 (238)
.|+++| +|...+...+++.++++..+.+
T Consensus 185 ~tvi~v----THd~~~~~~~adri~vl~~G~i 212 (359)
T 2yyz_A 185 ITSVYV----THDQAEAMTMASRIAVFNQGKL 212 (359)
T ss_dssp CEEEEE----ESCHHHHHHHCSEEEEEETTEE
T ss_pred CEEEEE----cCCHHHHHHhCCEEEEEECCEE
Confidence 899888 4888877777776665554444
No 14
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.94 E-value=1.4e-27 Score=214.30 Aligned_cols=153 Identities=15% Similarity=0.135 Sum_probs=121.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-----CCCCC-------CCCCChhhhhh------------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDY-------PVAMDIRELIS------------ 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-----~~~~~-------~~~~~i~~~i~------------ 58 (238)
-+++|+||||||||||+|+|+|+++|++|+|.++|.++.. +.++| ++.+++++++.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~ 109 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREE 109 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHTTCCHHH
T ss_pred CEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHH
Confidence 3689999999999999999999999999999999977532 22333 44567887764
Q ss_pred ----HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CC
Q 026486 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RN 130 (238)
Q Consensus 59 ----~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~ 130 (238)
++++++.+++.+...... ..++++++ ++||++|+. +|+++|||||++ ||+..+..+. +.++++++ .|
T Consensus 110 ~~~~v~~~l~~~~L~~~~~r~~--~~LSGGq~QRvalArAL~~--~P~lLLLDEP~s~LD~~~r~~l~-~~l~~l~~~~g 184 (362)
T 2it1_A 110 IDKKVREVAKMLHIDKLLNRYP--WQLSGGQQQRVAIARALVK--EPEVLLLDEPLSNLDALLRLEVR-AELKRLQKELG 184 (362)
T ss_dssp HHHHHHHHHHHTTCTTCTTCCG--GGSCHHHHHHHHHHHHHTT--CCSEEEEESGGGGSCHHHHHHHH-HHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCchHhhCCh--hhCCHHHHHHHHHHHHHHc--CCCEEEEECccccCCHHHHHHHH-HHHHHHHHhCC
Confidence 567889999986543332 35666654 999999999 999999999999 9999999999 88999865 48
Q ss_pred CeEEEEEecccccccchhHHHhhhHHHHHHHHhh
Q 026486 131 FNVCAVYLLDSQFITDVTKFISGCMASLSAMVQL 164 (238)
Q Consensus 131 ~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~ 164 (238)
.|+|+| +|...+...+++.++++..+.+..
T Consensus 185 ~tvi~v----THd~~~a~~~adri~vl~~G~i~~ 214 (362)
T 2it1_A 185 ITTVYV----THDQAEALAMADRIAVIREGEILQ 214 (362)
T ss_dssp CEEEEE----ESCHHHHHHHCSEEEEEETTEEEE
T ss_pred CEEEEE----CCCHHHHHHhCCEEEEEECCEEEE
Confidence 899888 488888778888776665555543
No 15
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.94 E-value=6.9e-28 Score=205.00 Aligned_cols=146 Identities=15% Similarity=0.135 Sum_probs=110.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC--------CCCCC-C------CCCChhhhhh---------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-P------VAMDIRELIS--------- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~--------~~~~~-~------~~~~i~~~i~--------- 58 (238)
-+++|+||||||||||+|+|+|+++|++|+|.++|.++.. ..++| + +.+++++++.
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~ 112 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDK 112 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhhcCCCH
Confidence 3689999999999999999999999999999999987632 12444 2 2346666553
Q ss_pred ------HHHHHHHcC-CCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 026486 59 ------LEDVMEELG-LGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (238)
Q Consensus 59 ------~~~~l~~~~-l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (238)
++++++.++ +....... ...++++++ ++||++++. +|+++||||||+ ||+.++..++ ++++++++
T Consensus 113 ~~~~~~~~~~l~~~~~l~~~~~~~--~~~LSgGq~qrv~lAraL~~--~p~lllLDEPts~LD~~~~~~l~-~~l~~~~~ 187 (240)
T 1ji0_A 113 EGIKRDLEWIFSLFPRLKERLKQL--GGTLSGGEQQMLAIGRALMS--RPKLLMMDEPSLGLAPILVSEVF-EVIQKINQ 187 (240)
T ss_dssp SHHHHHHHHHHHHCHHHHTTTTSB--SSSSCHHHHHHHHHHHHHTT--CCSEEEEECTTTTCCHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHhhHhcCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHHH
Confidence 345666663 64432221 134555543 899999999 999999999999 9999999999 99999876
Q ss_pred CCCeEEEEEecccccccchhHHHhhhHHH
Q 026486 129 RNFNVCAVYLLDSQFITDVTKFISGCMAS 157 (238)
Q Consensus 129 ~~~tvi~v~l~d~~~~~d~~~~~~~~l~~ 157 (238)
+|.+++++ +|.+.+...+++.+++.
T Consensus 188 ~g~tvi~v----tHd~~~~~~~~d~v~~l 212 (240)
T 1ji0_A 188 EGTTILLV----EQNALGALKVAHYGYVL 212 (240)
T ss_dssp TTCCEEEE----ESCHHHHHHHCSEEEEE
T ss_pred CCCEEEEE----ecCHHHHHHhCCEEEEE
Confidence 78899888 48877777777755443
No 16
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.94 E-value=1.6e-27 Score=204.74 Aligned_cols=147 Identities=19% Similarity=0.157 Sum_probs=111.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC--------CCCCC-CC------CCChhhhh----------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-PV------AMDIRELI---------- 57 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~--------~~~~~-~~------~~~i~~~i---------- 57 (238)
-+++|+||||||||||+|+|+|+++|++|+|.++|.++.. ..++| +| ..++++++
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~ 113 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGES 113 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccC
Confidence 3689999999999999999999999999999999987632 12333 22 23333322
Q ss_pred -------------------hHHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhH
Q 026486 58 -------------------SLEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTH 115 (238)
Q Consensus 58 -------------------~~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~ 115 (238)
.++++++.+|+.+..... ...++++++ ++||++++. +|+++|+||||+ ||+.++
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgGqkQrv~iAraL~~--~p~lllLDEPts~LD~~~~ 189 (257)
T 1g6h_A 114 PLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRK--AGELSGGQMKLVEIGRALMT--NPKMIVMDEPIAGVAPGLA 189 (257)
T ss_dssp HHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSB--GGGSCHHHHHHHHHHHHHHT--CCSEEEEESTTTTCCHHHH
T ss_pred cccccccccccCCHHHHHHHHHHHHHHcCCchhhCCC--chhCCHHHHHHHHHHHHHHc--CCCEEEEeCCccCCCHHHH
Confidence 145677788886543222 235666654 999999999 999999999999 999999
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEecccccccchhHHHhhhHHHH
Q 026486 116 VPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASL 158 (238)
Q Consensus 116 ~~~~~~ll~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~ 158 (238)
..++ +++++++++|.++|++ +|.+.....+++.+++..
T Consensus 190 ~~l~-~~l~~l~~~g~tvi~v----tHd~~~~~~~~d~v~~l~ 227 (257)
T 1g6h_A 190 HDIF-NHVLELKAKGITFLII----EHRLDIVLNYIDHLYVMF 227 (257)
T ss_dssp HHHH-HHHHHHHHTTCEEEEE----CSCCSTTGGGCSEEEEEE
T ss_pred HHHH-HHHHHHHHCCCEEEEE----ecCHHHHHHhCCEEEEEE
Confidence 9999 9999997778898877 588887777777554433
No 17
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.94 E-value=1.8e-27 Score=212.59 Aligned_cols=151 Identities=13% Similarity=0.155 Sum_probs=119.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-----CCCCC-------CCCCChhhhhh------------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDY-------PVAMDIRELIS------------ 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-----~~~~~-------~~~~~i~~~i~------------ 58 (238)
-+++|+||||||||||+|+|+|+++|++|+|.++|.++.. +.++| ++.+++++++.
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~ 106 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPK 106 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCCCHH
T ss_pred CEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHH
Confidence 3689999999999999999999999999999999987632 12332 45668888764
Q ss_pred -HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CCCeE
Q 026486 59 -LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNV 133 (238)
Q Consensus 59 -~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~~tv 133 (238)
++++++.+++.+...... ..++++++ ++||++|+. +|+++|||||++ ||+..+..+. ++++++++ .|.|+
T Consensus 107 ~v~~~l~~~~L~~~~~~~~--~~LSgGq~QRvalAraL~~--~P~lLLLDEP~s~LD~~~~~~l~-~~l~~l~~~~g~ti 181 (348)
T 3d31_A 107 RVLDTARDLKIEHLLDRNP--LTLSGGEQQRVALARALVT--NPKILLLDEPLSALDPRTQENAR-EMLSVLHKKNKLTV 181 (348)
T ss_dssp HHHHHHHHTTCTTTTTSCG--GGSCHHHHHHHHHHHHTTS--CCSEEEEESSSTTSCHHHHHHHH-HHHHHHHHHTTCEE
T ss_pred HHHHHHHHcCCchHhcCCh--hhCCHHHHHHHHHHHHHHc--CCCEEEEECccccCCHHHHHHHH-HHHHHHHHhcCCEE
Confidence 457888999976543332 35666654 999999999 999999999999 9999999999 88999865 58899
Q ss_pred EEEEecccccccchhHHHhhhHHHHHHHH
Q 026486 134 CAVYLLDSQFITDVTKFISGCMASLSAMV 162 (238)
Q Consensus 134 i~v~l~d~~~~~d~~~~~~~~l~~~~~~~ 162 (238)
|+| +|...+...+++.++++..+.+
T Consensus 182 i~v----THd~~~~~~~adri~vl~~G~i 206 (348)
T 3d31_A 182 LHI----THDQTEARIMADRIAVVMDGKL 206 (348)
T ss_dssp EEE----ESCHHHHHHHCSEEEEESSSCE
T ss_pred EEE----eCCHHHHHHhCCEEEEEECCEE
Confidence 888 4888877777776655544444
No 18
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.94 E-value=1.7e-27 Score=214.39 Aligned_cols=152 Identities=15% Similarity=0.101 Sum_probs=118.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-----CCCCC-------CCCCChhhhhh------------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDY-------PVAMDIRELIS------------ 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-----~~~~~-------~~~~~i~~~i~------------ 58 (238)
-+++|+||||||||||+|+|+|+++|++|+|.++|.++.. +.++| ++.+++++++.
T Consensus 38 e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~ 117 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDE 117 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC--CCCHHH
T ss_pred CEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHH
Confidence 3689999999999999999999999999999999987532 22333 34567777763
Q ss_pred ----HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC-C
Q 026486 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-N 130 (238)
Q Consensus 59 ----~~~~l~~~~l~~~~~~~~~~~~~~~~~--s~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~ 130 (238)
++++++.+++.+...... ..+++++ +++||++|+. +|+++|||||++ ||+..+..+. +.+++++++ |
T Consensus 118 ~~~~v~~~l~~~~L~~~~~r~~--~~LSGGq~QRvalArAL~~--~P~lLLLDEP~s~LD~~~r~~l~-~~l~~l~~~~g 192 (372)
T 1v43_A 118 IDKRVRWAAELLQIEELLNRYP--AQLSGGQRQRVAVARAIVV--EPDVLLMDEPLSNLDAKLRVAMR-AEIKKLQQKLK 192 (372)
T ss_dssp HHHHHHHHHHHTTCGGGTTSCT--TTCCSSCHHHHHHHHHHTT--CCSEEEEESTTTTSCHHHHHHHH-HHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCChhHhcCCh--hhCCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHHHHHH-HHHHHHHHhCC
Confidence 567889999976433222 3455554 3999999999 999999999999 9999999999 888988654 8
Q ss_pred CeEEEEEecccccccchhHHHhhhHHHHHHHHh
Q 026486 131 FNVCAVYLLDSQFITDVTKFISGCMASLSAMVQ 163 (238)
Q Consensus 131 ~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~ 163 (238)
.|+|+| +|...+...+++.++++..+.+.
T Consensus 193 ~tvi~v----THd~~~a~~~adri~vl~~G~i~ 221 (372)
T 1v43_A 193 VTTIYV----THDQVEAMTMGDRIAVMNRGQLL 221 (372)
T ss_dssp CEEEEE----ESCHHHHHHHCSEEEEEETTEEE
T ss_pred CEEEEE----eCCHHHHHHhCCEEEEEECCEEE
Confidence 899888 48888877888877665555543
No 19
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.94 E-value=2.5e-27 Score=213.37 Aligned_cols=152 Identities=16% Similarity=0.134 Sum_probs=119.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCC-----------CCCCCC-------CCCCChhhhhh-------
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----------AENFDY-------PVAMDIRELIS------- 58 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~-----------~~~~~~-------~~~~~i~~~i~------- 58 (238)
+++|+||||||||||+|+|+|+++|++|+|.++|.++. .+.++| ++.+++++++.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~ 110 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRK 110 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTT
T ss_pred EEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHcC
Confidence 68999999999999999999999999999999986542 122333 34567887764
Q ss_pred ---------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 026486 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (238)
Q Consensus 59 ---------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l 126 (238)
++++++.+++.+..... ...++++++ ++||++|+. +|++||||||++ ||+..+..+. ++++++
T Consensus 111 ~~~~~~~~~v~~~l~~~~L~~~~~r~--~~~LSGGq~QRvalArAL~~--~P~lLLLDEP~s~LD~~~r~~l~-~~l~~l 185 (372)
T 1g29_1 111 VPRQEIDQRVREVAELLGLTELLNRK--PRELSGGQRQRVALGRAIVR--KPQVFLMDEPLSNLDAKLRVRMR-AELKKL 185 (372)
T ss_dssp CCHHHHHHHHHHHHHHHTCGGGTTCC--GGGSCHHHHHHHHHHHHHHT--CCSEEEEECTTTTSCHHHHHHHH-HHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCchHhcCC--cccCCHHHHHHHHHHHHHhc--CCCEEEECCCCccCCHHHHHHHH-HHHHHH
Confidence 56788889997654332 235666654 999999999 999999999999 9999999999 888888
Q ss_pred Hh-CCCeEEEEEecccccccchhHHHhhhHHHHHHHHhh
Q 026486 127 KS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQL 164 (238)
Q Consensus 127 ~~-~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~ 164 (238)
++ .|.|+|+| +|...+...+++.+++...+.+..
T Consensus 186 ~~~~g~tvi~v----THd~~~a~~~adri~vl~~G~i~~ 220 (372)
T 1g29_1 186 QRQLGVTTIYV----THDQVEAMTMGDRIAVMNRGVLQQ 220 (372)
T ss_dssp HHHHTCEEEEE----ESCHHHHHHHCSEEEEEETTEEEE
T ss_pred HHhcCCEEEEE----CCCHHHHHHhCCEEEEEeCCEEEE
Confidence 65 48899888 488888888888776665555543
No 20
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.94 E-value=9.3e-27 Score=194.97 Aligned_cols=142 Identities=15% Similarity=0.116 Sum_probs=109.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCC--CCCCCC-------CCCCChhhhhh--------------HH
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--AENFDY-------PVAMDIRELIS--------------LE 60 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~--~~~~~~-------~~~~~i~~~i~--------------~~ 60 (238)
+++|+||||||||||+++|+|+++|++|+|.++|.++. ...++| ++.+++++++. ++
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~ 116 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIM 116 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHH
Confidence 68999999999999999999999999999999997642 112222 33456666653 45
Q ss_pred HHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEE
Q 026486 61 DVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVY 137 (238)
Q Consensus 61 ~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~tvi~v~ 137 (238)
++++.+|+... ... ...++++++ ++||++++. +|+++||||||+ ||+.++..++ +++++++++|.+++++
T Consensus 117 ~~l~~~gl~~~-~~~--~~~LSgGqkqrv~laraL~~--~p~lllLDEPts~LD~~~~~~l~-~~l~~~~~~g~tiiiv- 189 (214)
T 1sgw_A 117 DALESVEVLDL-KKK--LGELSQGTIRRVQLASTLLV--NAEIYVLDDPVVAIDEDSKHKVL-KSILEILKEKGIVIIS- 189 (214)
T ss_dssp HHHHHTTCCCT-TSB--GGGSCHHHHHHHHHHHHTTS--CCSEEEEESTTTTSCTTTHHHHH-HHHHHHHHHHSEEEEE-
T ss_pred HHHHHcCCCcC-CCC--hhhCCHHHHHHHHHHHHHHh--CCCEEEEECCCcCCCHHHHHHHH-HHHHHHHhCCCEEEEE-
Confidence 67888998765 222 245666654 899999999 999999999999 9999999999 8899987568888877
Q ss_pred ecccccccchhHHHhhhH
Q 026486 138 LLDSQFITDVTKFISGCM 155 (238)
Q Consensus 138 l~d~~~~~d~~~~~~~~l 155 (238)
+|.......+++.++
T Consensus 190 ---tHd~~~~~~~~d~v~ 204 (214)
T 1sgw_A 190 ---SREELSYCDVNENLH 204 (214)
T ss_dssp ---ESSCCTTSSEEEEGG
T ss_pred ---eCCHHHHHHhCCEEE
Confidence 477766666665544
No 21
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.94 E-value=1.7e-27 Score=205.55 Aligned_cols=150 Identities=19% Similarity=0.168 Sum_probs=114.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCC----CCCCCC-C-------CCCChhhhhh------------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA----AENFDY-P-------VAMDIRELIS------------ 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~----~~~~~~-~-------~~~~i~~~i~------------ 58 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.++. ...++| + ...++++++.
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~ 113 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDP 113 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHH
Confidence 368999999999999999999999999999999997752 112333 1 2245665542
Q ss_pred ---HHHHHHHcCCC--CCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCC
Q 026486 59 ---LEDVMEELGLG--PNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN 130 (238)
Q Consensus 59 ---~~~~l~~~~l~--~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~ 130 (238)
++++++.+|+. +..... ...++++++ ++||++++. +|+++|+||||+ ||+.++..++ +++++++++|
T Consensus 114 ~~~~~~~l~~~gl~~~~~~~~~--~~~LSgGq~qRv~lAraL~~--~p~lllLDEPts~LD~~~~~~l~-~~l~~l~~~g 188 (266)
T 2yz2_A 114 VPLVKKAMEFVGLDFDSFKDRV--PFFLSGGEKRRVAIASVIVH--EPDILILDEPLVGLDREGKTDLL-RIVEKWKTLG 188 (266)
T ss_dssp HHHHHHHHHHTTCCHHHHTTCC--GGGSCHHHHHHHHHHHHHTT--CCSEEEEESTTTTCCHHHHHHHH-HHHHHHHHTT
T ss_pred HHHHHHHHHHcCcCCcccccCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEcCccccCCHHHHHHHH-HHHHHHHHcC
Confidence 45788889987 432222 235666654 899999999 999999999999 9999999999 9999997668
Q ss_pred CeEEEEEecccccccchhHHHhhhHHHHHHH
Q 026486 131 FNVCAVYLLDSQFITDVTKFISGCMASLSAM 161 (238)
Q Consensus 131 ~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~ 161 (238)
.++|++ +|.+.....+++.+++...+.
T Consensus 189 ~tii~v----tHd~~~~~~~~d~v~~l~~G~ 215 (266)
T 2yz2_A 189 KTVILI----SHDIETVINHVDRVVVLEKGK 215 (266)
T ss_dssp CEEEEE----CSCCTTTGGGCSEEEEEETTE
T ss_pred CEEEEE----eCCHHHHHHhCCEEEEEECCE
Confidence 888877 588777777777655544443
No 22
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.94 E-value=1.8e-27 Score=212.99 Aligned_cols=151 Identities=17% Similarity=0.131 Sum_probs=118.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCC----------CCCCCC-------CCCCChhhhhh-------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA----------AENFDY-------PVAMDIRELIS------- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~----------~~~~~~-------~~~~~i~~~i~------- 58 (238)
-+++|+||||||||||+|+|+|+++|++|+|.++|.++. ...++| ++.+++++++.
T Consensus 32 e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~ 111 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMK 111 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHcC
Confidence 368999999999999999999999999999999986542 122333 44567777763
Q ss_pred ---------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 026486 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (238)
Q Consensus 59 ---------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l 126 (238)
++++++.+|+.+..... ...++++++ ++||++|+. +|+++|||||++ ||+..+..+. ++++++
T Consensus 112 ~~~~~~~~~v~~~l~~~~L~~~~~~~--~~~LSGGq~QRvalAraL~~--~P~lLLLDEP~s~LD~~~r~~l~-~~l~~l 186 (353)
T 1oxx_K 112 MSKEEIRKRVEEVAKILDIHHVLNHF--PRELSGAQQQRVALARALVK--DPSLLLLDEPFSNLDARMRDSAR-ALVKEV 186 (353)
T ss_dssp CCHHHHHHHHHHHHHHTTCGGGTTSC--GGGSCHHHHHHHHHHHHHTT--CCSEEEEESTTTTSCGGGHHHHH-HHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCchHhcCC--hhhCCHHHHHHHHHHHHHHh--CCCEEEEECCcccCCHHHHHHHH-HHHHHH
Confidence 56788999997653332 235666654 999999999 999999999999 9999999999 889988
Q ss_pred Hh-CCCeEEEEEecccccccchhHHHhhhHHHHHHHH
Q 026486 127 KS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMV 162 (238)
Q Consensus 127 ~~-~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~ 162 (238)
++ .|.|+|+| +|...+...+++.++++..+.+
T Consensus 187 ~~~~g~tvi~v----THd~~~~~~~adri~vl~~G~i 219 (353)
T 1oxx_K 187 QSRLGVTLLVV----SHDPADIFAIADRVGVLVKGKL 219 (353)
T ss_dssp HHHHCCEEEEE----ESCHHHHHHHCSEEEEEETTEE
T ss_pred HHhcCCEEEEE----eCCHHHHHHhCCEEEEEECCEE
Confidence 65 48899888 4888877777776655544443
No 23
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.93 E-value=1.2e-27 Score=207.90 Aligned_cols=145 Identities=16% Similarity=0.285 Sum_probs=110.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCC--C-------CCCCC-CC--------CCChhhhhh-------
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--A-------ENFDY-PV--------AMDIRELIS------- 58 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~--~-------~~~~~-~~--------~~~i~~~i~------- 58 (238)
+++|+||||||||||+|+|+|+++|++|+|.++|.++. . ..++| +| ..++++++.
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~ 128 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSI 128 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC----
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhcc
Confidence 68999999999999999999999999999999998764 1 22333 11 235665542
Q ss_pred -------------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHH
Q 026486 59 -------------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (238)
Q Consensus 59 -------------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~l 122 (238)
+.++++.+|+....... ...++++++ ++||++++. +|+++||||||+ ||+.++..++ ++
T Consensus 129 ~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~--~~~LSgGqkqRv~lAraL~~--~p~lLlLDEPts~LD~~~~~~l~-~~ 203 (279)
T 2ihy_A 129 GVYQDIDDEIRNEAHQLLKLVGMSAKAQQY--IGYLSTGEKQRVMIARALMG--QPQVLILDEPAAGLDFIARESLL-SI 203 (279)
T ss_dssp -----CCHHHHHHHHHHHHHTTCGGGTTSB--GGGSCHHHHHHHHHHHHHHT--CCSEEEEESTTTTCCHHHHHHHH-HH
T ss_pred ccccCCcHHHHHHHHHHHHHcCChhHhcCC--hhhCCHHHHHHHHHHHHHhC--CCCEEEEeCCccccCHHHHHHHH-HH
Confidence 45678888886543222 235666654 899999999 999999999999 9999999999 99
Q ss_pred HHHHHhCCCeE--EEEEecccccccchhHHHhhhHHH
Q 026486 123 VDHLKSRNFNV--CAVYLLDSQFITDVTKFISGCMAS 157 (238)
Q Consensus 123 l~~l~~~~~tv--i~v~l~d~~~~~d~~~~~~~~l~~ 157 (238)
+++++++|.++ |++ +|.+.+...+++.+++.
T Consensus 204 l~~l~~~g~tv~~iiv----tHd~~~~~~~~d~v~~l 236 (279)
T 2ihy_A 204 LDSLSDSYPTLAMIYV----THFIEEITANFSKILLL 236 (279)
T ss_dssp HHHHHHHCTTCEEEEE----ESCGGGCCTTCCEEEEE
T ss_pred HHHHHHCCCEEEEEEE----ecCHHHHHHhCCEEEEE
Confidence 99987558888 777 47776666666644433
No 24
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.93 E-value=5.2e-27 Score=200.75 Aligned_cols=143 Identities=17% Similarity=0.220 Sum_probs=111.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-------CCCCC-------CCCCChhhhhh-----------
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-------PVAMDIRELIS----------- 58 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-------~~~~~i~~~i~----------- 58 (238)
+++|+||||||||||+++|+|+++|+ |+|.++|.++.. ..++| ++..++++++.
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~ 106 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTEL 106 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHHHHHTTCSSTTCHHH
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHHHHHHhhccCCcHHH
Confidence 68999999999999999999999999 999999976521 11222 23456776653
Q ss_pred HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCC-------EEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 026486 59 LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDD-------YLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (238)
Q Consensus 59 ~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~-------~lilDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (238)
++++++.+|+.+..... ...++++++ ++||++++. +|+ ++||||||+ ||+.++..++ ++++++++
T Consensus 107 ~~~~l~~~~l~~~~~~~--~~~LSgGq~qrv~lAraL~~--~p~~~~~~~~lllLDEPts~LD~~~~~~l~-~~l~~l~~ 181 (249)
T 2qi9_C 107 LNDVAGALALDDKLGRS--TNQLSGGEWQRVRLAAVVLQ--ITPQANPAGQLLLLDEPMNSLDVAQQSALD-KILSALSQ 181 (249)
T ss_dssp HHHHHHHTTCGGGTTSB--GGGCCHHHHHHHHHHHHHHH--HCTTTCTTCCEEEESSTTTTCCHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHcCChhHhcCC--hhhCCHHHHHHHHHHHHHHc--CCCcCCCCCeEEEEECCcccCCHHHHHHHH-HHHHHHHh
Confidence 56788899987543222 245666654 899999999 999 999999999 9999999999 99999876
Q ss_pred CCCeEEEEEecccccccchhHHHhhhHH
Q 026486 129 RNFNVCAVYLLDSQFITDVTKFISGCMA 156 (238)
Q Consensus 129 ~~~tvi~v~l~d~~~~~d~~~~~~~~l~ 156 (238)
+|.++|++ +|.......+++.+++
T Consensus 182 ~g~tviiv----tHd~~~~~~~~d~v~~ 205 (249)
T 2qi9_C 182 QGLAIVMS----SHDLNHTLRHAHRAWL 205 (249)
T ss_dssp TTCEEEEE----CSCHHHHHHHCSEEEE
T ss_pred CCCEEEEE----eCCHHHHHHhCCEEEE
Confidence 68888877 5887766677665443
No 25
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.93 E-value=1.5e-26 Score=197.91 Aligned_cols=139 Identities=14% Similarity=0.193 Sum_probs=102.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC--CcCCCceEEEeeecCCC--------CCCCC-CC------CCChhhhhh-------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRH--CETVRRTMHIVNLDPAA--------ENFDY-PV------AMDIRELIS------- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~--l~~~~G~i~i~~~d~~~--------~~~~~-~~------~~~i~~~i~------- 58 (238)
-+++|+||||||||||+++|+|+ ++|++|+|.++|.++.. ..++| +| .+++++++.
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~ 109 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKL 109 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhc
Confidence 36899999999999999999998 78999999999987632 12344 22 345555442
Q ss_pred ------------HHHHHHHcCCC-CCCchhhhHHh-hhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHH
Q 026486 59 ------------LEDVMEELGLG-PNGGLIYCMEH-LEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (238)
Q Consensus 59 ------------~~~~l~~~~l~-~~~~~~~~~~~-~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ 121 (238)
+.++++.+|+. ...... ... ++++++ ++||++++. +|+++||||||+ ||+.++..++ +
T Consensus 110 ~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~--~~~~LSgGqkQrv~iAraL~~--~p~lllLDEPts~LD~~~~~~l~-~ 184 (250)
T 2d2e_A 110 GREVGVAEFWTKVKKALELLDWDESYLSRY--LNEGFSGGEKKRNEILQLLVL--EPTYAVLDETDSGLDIDALKVVA-R 184 (250)
T ss_dssp TSCCCHHHHHHHHHHHHHHHTCCGGGGGSB--TTCC----HHHHHHHHHHHHH--CCSEEEEECGGGTTCHHHHHHHH-H
T ss_pred cccCCHHHHHHHHHHHHHHcCCChhHhcCC--cccCCCHHHHHHHHHHHHHHc--CCCEEEEeCCCcCCCHHHHHHHH-H
Confidence 34567778884 322111 123 555544 899999999 999999999999 9999999999 9
Q ss_pred HHHHHHhCCCeEEEEEecccccccchhHH
Q 026486 122 FVDHLKSRNFNVCAVYLLDSQFITDVTKF 150 (238)
Q Consensus 122 ll~~l~~~~~tvi~v~l~d~~~~~d~~~~ 150 (238)
++++++++|.++|++ +|.......+
T Consensus 185 ~l~~l~~~g~tvi~v----tHd~~~~~~~ 209 (250)
T 2d2e_A 185 GVNAMRGPNFGALVI----THYQRILNYI 209 (250)
T ss_dssp HHHHHCSTTCEEEEE----CSSSGGGGTS
T ss_pred HHHHHHhcCCEEEEE----ecCHHHHHHh
Confidence 999986668888877 4776655544
No 26
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.92 E-value=2.6e-26 Score=196.12 Aligned_cols=137 Identities=18% Similarity=0.121 Sum_probs=100.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-------CCCCC-CC-----CCChhhhhh----------H
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------L 59 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~-----~~~i~~~i~----------~ 59 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| +| ..++++++. +
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~ 115 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKV 115 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTTSBHHHHHTTTCTTCCHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCccccccHHHHHhccCCCCCHHHH
Confidence 3689999999999999999999999999999999987642 11333 22 236777663 3
Q ss_pred HHHHHHcCCCCCCchh---------hhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 026486 60 EDVMEELGLGPNGGLI---------YCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (238)
Q Consensus 60 ~~~l~~~~l~~~~~~~---------~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~ 127 (238)
.++++.+++....... .....++++++ ++||++++. +|+++||||||+ ||+.++..++ +++++++
T Consensus 116 ~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~--~p~lllLDEPts~LD~~~~~~i~-~~l~~~~ 192 (247)
T 2ff7_A 116 IYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVN--NPKILIFDEATSALDYESEHVIM-RNMHKIC 192 (247)
T ss_dssp HHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTT--CCSEEEECCCCSCCCHHHHHHHH-HHHHHHH
T ss_pred HHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHc
Confidence 4556666664210000 00124555544 999999999 999999999999 9999999999 8999885
Q ss_pred hCCCeEEEEEecccccccch
Q 026486 128 SRNFNVCAVYLLDSQFITDV 147 (238)
Q Consensus 128 ~~~~tvi~v~l~d~~~~~d~ 147 (238)
+|.|+|++ +|.+...
T Consensus 193 -~g~tviiv----tH~~~~~ 207 (247)
T 2ff7_A 193 -KGRTVIII----AHRLSTV 207 (247)
T ss_dssp -TTSEEEEE----CSSGGGG
T ss_pred -CCCEEEEE----eCCHHHH
Confidence 58888877 4766543
No 27
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.92 E-value=5.5e-26 Score=196.17 Aligned_cols=145 Identities=14% Similarity=0.109 Sum_probs=104.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC--CcCCCceEEEeeecCCC--------CCCCC-CC------CCChhhhh--------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRH--CETVRRTMHIVNLDPAA--------ENFDY-PV------AMDIRELI-------- 57 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~--l~~~~G~i~i~~~d~~~--------~~~~~-~~------~~~i~~~i-------- 57 (238)
-+++|+||||||||||+|+|+|+ ++|++|+|.++|.++.. ..++| +| .+++.+++
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~ 126 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVR 126 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCccccccccHHHHHHHHHHhhh
Confidence 36899999999999999999999 47899999999977532 11233 22 23333322
Q ss_pred ---------------hHHHHHHHcCCCC-CCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHH
Q 026486 58 ---------------SLEDVMEELGLGP-NGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (238)
Q Consensus 58 ---------------~~~~~l~~~~l~~-~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~ 118 (238)
.++++++.+|+.. ..... ....++++++ ++||++++. +|+++||||||+ ||+.++..+
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-~~~~LSgGq~QRv~iAraL~~--~p~lLlLDEPts~LD~~~~~~l 203 (267)
T 2zu0_C 127 SYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRS-VNVGFSGGEKKRNDILQMAVL--EPELCILDESDSGLDIDALKVV 203 (267)
T ss_dssp HGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSB-TTTTCCHHHHHHHHHHHHHHH--CCSEEEEESTTTTCCHHHHHHH
T ss_pred hhhccccCCHHHHHHHHHHHHHHcCCChhHhcCC-cccCCCHHHHHHHHHHHHHHh--CCCEEEEeCCCCCCCHHHHHHH
Confidence 1456788888863 22221 1113666654 999999999 999999999999 999999999
Q ss_pred HHHHHHHHHhCCCeEEEEEecccccccchhHH-HhhhH
Q 026486 119 LRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF-ISGCM 155 (238)
Q Consensus 119 ~~~ll~~l~~~~~tvi~v~l~d~~~~~d~~~~-~~~~l 155 (238)
+ +++++++++|.++|++ +|.+.....+ ++.++
T Consensus 204 ~-~~l~~l~~~g~tviiv----tHd~~~~~~~~~d~v~ 236 (267)
T 2zu0_C 204 A-DGVNSLRDGKRSFIIV----THYQRILDYIKPDYVH 236 (267)
T ss_dssp H-HHHHTTCCSSCEEEEE----CSSGGGGGTSCCSEEE
T ss_pred H-HHHHHHHhcCCEEEEE----eeCHHHHHhhcCCEEE
Confidence 9 8999886668888777 4776655443 44443
No 28
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.92 E-value=4.7e-26 Score=193.95 Aligned_cols=136 Identities=16% Similarity=0.124 Sum_probs=102.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-------CCCCC-CCC-----CChhhhhh-----------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PVA-----MDIRELIS----------- 58 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~~-----~~i~~~i~----------- 58 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| +|+ .++++++.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~ 108 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDED 108 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCEEHHHHTTSCTTSCSCHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEEcCCCccccccHHHHHhhhccCCCCHHH
Confidence 3689999999999999999999999999999999977532 23444 221 25666553
Q ss_pred HHHHHHHcCCCCCCchh---------hhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 026486 59 LEDVMEELGLGPNGGLI---------YCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (238)
Q Consensus 59 ~~~~l~~~~l~~~~~~~---------~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l 126 (238)
+.++++.+++....... .....++++++ ++||++++. +|+++|+||||+ ||+.++..++ ++++++
T Consensus 109 ~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~--~p~lllLDEPts~LD~~~~~~i~-~~l~~~ 185 (243)
T 1mv5_A 109 LWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLR--NPKILMLDEATASLDSESESMVQ-KALDSL 185 (243)
T ss_dssp HHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHH--CCSEEEEECCSCSSCSSSCCHHH-HHHHHH
T ss_pred HHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhc--CCCEEEEECCcccCCHHHHHHHH-HHHHHh
Confidence 45677777876432111 00124555544 999999999 999999999999 9999999999 889988
Q ss_pred HhCCCeEEEEEecccccccc
Q 026486 127 KSRNFNVCAVYLLDSQFITD 146 (238)
Q Consensus 127 ~~~~~tvi~v~l~d~~~~~d 146 (238)
+ +|.|+|++ +|....
T Consensus 186 ~-~~~tvi~v----tH~~~~ 200 (243)
T 1mv5_A 186 M-KGRTTLVI----AHRLST 200 (243)
T ss_dssp H-TTSEEEEE----CCSHHH
T ss_pred c-CCCEEEEE----eCChHH
Confidence 6 58888877 476643
No 29
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.92 E-value=3.6e-25 Score=189.71 Aligned_cols=142 Identities=18% Similarity=0.267 Sum_probs=105.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEe---eecCCCCCCCCCCCCChhhhh--------------------hHH
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV---NLDPAAENFDYPVAMDIRELI--------------------SLE 60 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~---~~d~~~~~~~~~~~~~i~~~i--------------------~~~ 60 (238)
+++|+||||||||||+++|+|+++|++|+|.+. +.-+ +...+++..++++++ .++
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~--q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~ 110 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVP--QFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAM 110 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEEC--SCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEc--CCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHH
Confidence 689999999999999999999999999999742 1111 111112233443332 256
Q ss_pred HHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC-CCeEEEE
Q 026486 61 DVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFNVCAV 136 (238)
Q Consensus 61 ~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~~tvi~v 136 (238)
++++.+|+.+..... ...++++++ ++||++++. +|+++||||||+ ||+.++..++ +++++++++ |.++|++
T Consensus 111 ~~l~~~~l~~~~~~~--~~~LSgGq~qrv~lAraL~~--~p~lllLDEPts~LD~~~~~~l~-~~l~~l~~~~g~tvi~v 185 (253)
T 2nq2_C 111 QALDYLNLTHLAKRE--FTSLSGGQRQLILIARAIAS--ECKLILLDEPTSALDLANQDIVL-SLLIDLAQSQNMTVVFT 185 (253)
T ss_dssp HHHHHTTCGGGTTSB--GGGSCHHHHHHHHHHHHHHT--TCSEEEESSSSTTSCHHHHHHHH-HHHHHHHHTSCCEEEEE
T ss_pred HHHHHcCChHHhcCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEE
Confidence 678888987543222 235666654 999999999 999999999999 9999999999 999998765 8888887
Q ss_pred EecccccccchhHHHhhhHH
Q 026486 137 YLLDSQFITDVTKFISGCMA 156 (238)
Q Consensus 137 ~l~d~~~~~d~~~~~~~~l~ 156 (238)
+|.+.....+++.+++
T Consensus 186 ----tHd~~~~~~~~d~v~~ 201 (253)
T 2nq2_C 186 ----THQPNQVVAIANKTLL 201 (253)
T ss_dssp ----ESCHHHHHHHCSEEEE
T ss_pred ----ecCHHHHHHhCCEEEE
Confidence 4888777777765544
No 30
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.92 E-value=7.1e-26 Score=195.93 Aligned_cols=134 Identities=18% Similarity=0.189 Sum_probs=97.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-------CCCCC-CC-----CCChhhhhhH-----------
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELISL----------- 59 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~-----~~~i~~~i~~----------- 59 (238)
+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| +| ..++++++..
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~ 126 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEI 126 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCSSBHHHHHHTTCSSCCCHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhccEEEEecCCccccccHHHHHhhhcccCChHHHH
Confidence 689999999999999999999999999999999977532 11233 22 1356665531
Q ss_pred ---------HHHHHHc--CCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 026486 60 ---------EDVMEEL--GLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (238)
Q Consensus 60 ---------~~~l~~~--~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~ 125 (238)
.++++.+ |+....... ...++++++ ++||++|+. +|++|||||||+ ||+.++..++ +++++
T Consensus 127 ~~~~~~~~~~~~l~~l~~gl~~~~~~~--~~~LSgGq~QRv~lAraL~~--~p~lllLDEPts~LD~~~~~~i~-~~l~~ 201 (271)
T 2ixe_A 127 TAVAMESGAHDFISGFPQGYDTEVGET--GNQLSGGQRQAVALARALIR--KPRLLILDNATSALDAGNQLRVQ-RLLYE 201 (271)
T ss_dssp HHHHHHHTCHHHHHHSTTGGGSBCCGG--GTTSCHHHHHHHHHHHHHTT--CCSEEEEESTTTTCCHHHHHHHH-HHHHH
T ss_pred HHHHHHHhHHHHHHhhhcchhhhhcCC--cCCCCHHHHHHHHHHHHHhc--CCCEEEEECCccCCCHHHHHHHH-HHHHH
Confidence 2234444 343322221 134555543 999999999 999999999999 9999999999 89988
Q ss_pred HHh-CCCeEEEEEecccccccc
Q 026486 126 LKS-RNFNVCAVYLLDSQFITD 146 (238)
Q Consensus 126 l~~-~~~tvi~v~l~d~~~~~d 146 (238)
+.+ .|.++|+| +|.+..
T Consensus 202 ~~~~~g~tviiv----tHd~~~ 219 (271)
T 2ixe_A 202 SPEWASRTVLLI----TQQLSL 219 (271)
T ss_dssp CTTTTTSEEEEE----CSCHHH
T ss_pred HHhhcCCEEEEE----eCCHHH
Confidence 864 48888877 476643
No 31
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.92 E-value=1e-25 Score=194.22 Aligned_cols=146 Identities=12% Similarity=0.198 Sum_probs=110.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCC----CCCCC-C-CC----CCChhhhhh------------HHH
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA----AENFD-Y-PV----AMDIRELIS------------LED 61 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~----~~~~~-~-~~----~~~i~~~i~------------~~~ 61 (238)
+++|+||||||||||+++|+|++ |++|+|.++|.++. ...++ | +| ..++++++. +++
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l~~tv~enl~~~~~~~~~~~~~~~~ 110 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLE 110 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEECCGGGSCTTSBHHHHHHHHHHHTCCCHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEEEeCCCCccCCcHHHHHHHhhhhcchHHHHHHH
Confidence 68999999999999999999999 99999999997642 23455 5 33 346777664 457
Q ss_pred HHHHcCCC-CCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEE
Q 026486 62 VMEELGLG-PNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVY 137 (238)
Q Consensus 62 ~l~~~~l~-~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~tvi~v~ 137 (238)
+++.+++. ...... ...++++++ ++||++++. +|+++||||||+ ||+.++..++ ++++++++ +++++
T Consensus 111 ~l~~~gl~~~~~~~~--~~~LSgGqkqRv~lAraL~~--~p~lllLDEPts~LD~~~~~~l~-~~L~~~~~---tviiv- 181 (263)
T 2pjz_A 111 MLKALKLGEEILRRK--LYKLSAGQSVLVRTSLALAS--QPEIVGLDEPFENVDAARRHVIS-RYIKEYGK---EGILV- 181 (263)
T ss_dssp HHHHTTCCGGGGGSB--GGGSCHHHHHHHHHHHHHHT--CCSEEEEECTTTTCCHHHHHHHH-HHHHHSCS---EEEEE-
T ss_pred HHHHcCCChhHhcCC--hhhCCHHHHHHHHHHHHHHh--CCCEEEEECCccccCHHHHHHHH-HHHHHhcC---cEEEE-
Confidence 88889987 432222 235666654 899999999 999999999999 9999999998 88887743 77777
Q ss_pred ecccccccchhHHHh-hhHHHHHHHH
Q 026486 138 LLDSQFITDVTKFIS-GCMASLSAMV 162 (238)
Q Consensus 138 l~d~~~~~d~~~~~~-~~l~~~~~~~ 162 (238)
+|.......+++ .+++...+.+
T Consensus 182 ---tHd~~~~~~~~d~~i~~l~~G~i 204 (263)
T 2pjz_A 182 ---THELDMLNLYKEYKAYFLVGNRL 204 (263)
T ss_dssp ---ESCGGGGGGCTTSEEEEEETTEE
T ss_pred ---EcCHHHHHHhcCceEEEEECCEE
Confidence 477776666666 6555444443
No 32
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.91 E-value=4.2e-25 Score=194.11 Aligned_cols=152 Identities=15% Similarity=0.183 Sum_probs=107.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-------CCCCC-CC-----CCChhhhhh----------H
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------L 59 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~-----~~~i~~~i~----------~ 59 (238)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| +| ..++++++. +
T Consensus 81 e~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~ 160 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEV 160 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTSTTCCHHHH
T ss_pred CEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcccCCHHHH
Confidence 3689999999999999999999999999999999988753 12333 22 236777764 4
Q ss_pred HHHHHHcCCCCCC-----chh----hhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 026486 60 EDVMEELGLGPNG-----GLI----YCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (238)
Q Consensus 60 ~~~l~~~~l~~~~-----~~~----~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~ 127 (238)
.++++..++.... +.. .....++++++ ++|||+++. +|++|||||||+ ||+.+...++ +.++++.
T Consensus 161 ~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~--~p~iLlLDEPts~LD~~~~~~i~-~~l~~l~ 237 (306)
T 3nh6_A 161 EAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILK--APGIILLDEATSALDTSNERAIQ-ASLAKVC 237 (306)
T ss_dssp HHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHH--CCSEEEEECCSSCCCHHHHHHHH-HHHHHHH
T ss_pred HHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHh--CCCEEEEECCcccCCHHHHHHHH-HHHHHHc
Confidence 4455555543210 000 00013555543 999999999 999999999999 9999999999 8888885
Q ss_pred hCCCeEEEEEecccccccchhHHHhhhHHHHHHHHh
Q 026486 128 SRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQ 163 (238)
Q Consensus 128 ~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~ 163 (238)
+ +.|+|+| +|.+..... ++.+++...|.+.
T Consensus 238 ~-~~Tvi~i----tH~l~~~~~-aD~i~vl~~G~iv 267 (306)
T 3nh6_A 238 A-NRTTIVV----AHRLSTVVN-ADQILVIKDGCIV 267 (306)
T ss_dssp T-TSEEEEE----CCSHHHHHT-CSEEEEEETTEEE
T ss_pred C-CCEEEEE----EcChHHHHc-CCEEEEEECCEEE
Confidence 4 6788877 587765543 5545444444443
No 33
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.90 E-value=1.4e-24 Score=186.66 Aligned_cols=135 Identities=19% Similarity=0.148 Sum_probs=97.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-------CCCCC-CC-----CCChhhhhh----------H
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------L 59 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~-----~~~i~~~i~----------~ 59 (238)
-+++|+||||||||||+++|+|++++ +|+|.++|.++.. ..++| +| ..++++++. +
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~ 125 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATDEEV 125 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCSEEHHHHHHTTCTTCCHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhccEEEEcCCCcccccCHHHHHhccCCCCCHHHH
Confidence 36899999999999999999999987 8999999977532 22344 22 235666653 3
Q ss_pred HHHHHHcCCCCCC-----chh----hhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 026486 60 EDVMEELGLGPNG-----GLI----YCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (238)
Q Consensus 60 ~~~l~~~~l~~~~-----~~~----~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~ 127 (238)
.++++.+++.... +.. .....++++++ ++||++++. +|+++||||||+ ||+.++..++ +++++++
T Consensus 126 ~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~--~p~lllLDEPts~LD~~~~~~i~-~~l~~l~ 202 (260)
T 2ghi_A 126 IKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLK--DPKIVIFDEATSSLDSKTEYLFQ-KAVEDLR 202 (260)
T ss_dssp HHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHH--CCSEEEEECCCCTTCHHHHHHHH-HHHHHHT
T ss_pred HHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHc--CCCEEEEECccccCCHHHHHHHH-HHHHHhc
Confidence 3455555542210 000 00123555543 999999999 999999999999 9999999999 8999885
Q ss_pred hCCCeEEEEEecccccccc
Q 026486 128 SRNFNVCAVYLLDSQFITD 146 (238)
Q Consensus 128 ~~~~tvi~v~l~d~~~~~d 146 (238)
+ +.++|++ +|.+..
T Consensus 203 ~-~~tviiv----tH~~~~ 216 (260)
T 2ghi_A 203 K-NRTLIII----AHRLST 216 (260)
T ss_dssp T-TSEEEEE----CSSGGG
T ss_pred C-CCEEEEE----cCCHHH
Confidence 4 7888777 466553
No 34
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.89 E-value=1.6e-24 Score=183.89 Aligned_cols=142 Identities=19% Similarity=0.192 Sum_probs=95.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeec-CCCCCCCCCCCCChhhhhh---------HHHHHHHcCC-----
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-PAAENFDYPVAMDIRELIS---------LEDVMEELGL----- 68 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d-~~~~~~~~~~~~~i~~~i~---------~~~~l~~~~l----- 68 (238)
+++|+||||||||||+++|+|+++|++|+|.++|.- .-.+. ++.+..++++++. .+++++.+++
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~i~~v~Q~-~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~ 111 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQ-AWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLE 111 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECSCEEEECSS-CCCCSEEHHHHHHTTSCCCTTHHHHHHHHTTCHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEEEEcCC-CcCCCcCHHHHhhCccccCHHHHHHHHHHHhhHHHHH
Confidence 689999999999999999999999999999998721 00111 1122446666653 2334443332
Q ss_pred -CCCCch---hhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHH---HHHhCCCeEEEEEe
Q 026486 69 -GPNGGL---IYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD---HLKSRNFNVCAVYL 138 (238)
Q Consensus 69 -~~~~~~---~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~---~l~~~~~tvi~v~l 138 (238)
.+.+.. ......++++++ ++||++++. +|+++|+||||+ ||+.++..++ +++. ++. +|.++|++
T Consensus 112 ~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~--~p~lllLDEPts~LD~~~~~~i~-~~l~~~~~~~-~~~tviiv-- 185 (237)
T 2cbz_A 112 ILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYS--NADIYLFDDPLSAVDAHVGKHIF-ENVIGPKGML-KNKTRILV-- 185 (237)
T ss_dssp TSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHH--CCSEEEEESTTTTSCHHHHHHHH-HHTTSTTSTT-TTSEEEEE--
T ss_pred hccccccccccCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCcccccCHHHHHHHH-HHHHHHHhhc-CCCEEEEE--
Confidence 221100 001124555544 999999999 999999999999 9999999988 7663 343 47888777
Q ss_pred cccccccchhHHHhhhH
Q 026486 139 LDSQFITDVTKFISGCM 155 (238)
Q Consensus 139 ~d~~~~~d~~~~~~~~l 155 (238)
+|...... +++.++
T Consensus 186 --tH~~~~~~-~~d~v~ 199 (237)
T 2cbz_A 186 --THSMSYLP-QVDVII 199 (237)
T ss_dssp --CSCSTTGG-GSSEEE
T ss_pred --ecChHHHH-hCCEEE
Confidence 47665443 344333
No 35
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.89 E-value=1.3e-24 Score=183.44 Aligned_cols=134 Identities=18% Similarity=0.115 Sum_probs=92.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeec-CCCCCCCCCCCCChhhhhh---------HHHHHHHcCCCC---
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-PAAENFDYPVAMDIRELIS---------LEDVMEELGLGP--- 70 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d-~~~~~~~~~~~~~i~~~i~---------~~~~l~~~~l~~--- 70 (238)
+++|+||||||||||+++|+|+++|++|+|.++|.- ...+...+++ .++++++. ..++++.+++..
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~ 114 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMP-GTIKENIIFGVSYDEYRYRSVIKACQLEEDIS 114 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSSCCCCS-BCHHHHHHTTSCCCHHHHHHHHHHTTCHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCccEEEECCEEEEEecCCcccC-CCHHHHhhccCCcChHHHHHHHHHhCcHHHHH
Confidence 689999999999999999999999999999998721 0011112223 37777764 233445444421
Q ss_pred ---CCchh---hhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHH-HHHHHhCCCeEEEEEecc
Q 026486 71 ---NGGLI---YCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF-VDHLKSRNFNVCAVYLLD 140 (238)
Q Consensus 71 ---~~~~~---~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~l-l~~l~~~~~tvi~v~l~d 140 (238)
.+... .....++++++ ++||++++. +|+++||||||+ ||+.++..++ +. ++++. .+.++|++
T Consensus 115 ~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~--~p~lllLDEPts~LD~~~~~~i~-~~l~~~~~-~~~tvi~v---- 186 (229)
T 2pze_A 115 KFAEKDNIVLGEGGITLSGGQRARISLARAVYK--DADLYLLDSPFGYLDVLTEKEIF-ESCVCKLM-ANKTRILV---- 186 (229)
T ss_dssp TSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHS--CCSEEEEESTTTTSCHHHHHHHH-HHCCCCCT-TTSEEEEE----
T ss_pred hCcccccccccCCCCcCCHHHHHHHHHHHHHhc--CCCEEEEECcccCCCHHHHHHHH-HHHHHHhh-CCCEEEEE----
Confidence 11000 00124555544 899999999 999999999999 9999999888 64 45553 47788777
Q ss_pred cccccc
Q 026486 141 SQFITD 146 (238)
Q Consensus 141 ~~~~~d 146 (238)
+|....
T Consensus 187 tH~~~~ 192 (229)
T 2pze_A 187 TSKMEH 192 (229)
T ss_dssp CCCHHH
T ss_pred cCChHH
Confidence 476643
No 36
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.88 E-value=3.5e-23 Score=194.51 Aligned_cols=146 Identities=14% Similarity=0.141 Sum_probs=110.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC--CCCCCCCCCChhhhhh-------------HHHHHHHcCC
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--ENFDYPVAMDIRELIS-------------LEDVMEELGL 68 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~--~~~~~~~~~~i~~~i~-------------~~~~l~~~~l 68 (238)
+++|+||||||||||+++|+|+++|++|+|.+.+..++. +........++++++. ++++++.+++
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l 375 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNL 375 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTG
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHHcCC
Confidence 689999999999999999999999999999987654321 1111122345555443 4566777777
Q ss_pred CCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CCCeEEEEEecccccc
Q 026486 69 GPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNVCAVYLLDSQFI 144 (238)
Q Consensus 69 ~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~~tvi~v~l~d~~~~ 144 (238)
.+..... ...++++++ ++||++|+. +|++|||||||+ ||+.++..++ ++++++++ .|.++++| +|.+
T Consensus 376 ~~~~~~~--~~~LSGGq~QRv~iAraL~~--~p~lLlLDEPT~gLD~~~~~~i~-~~l~~l~~~~g~tvi~v----sHdl 446 (538)
T 3ozx_A 376 HRLLESN--VNDLSGGELQKLYIAATLAK--EADLYVLDQPSSYLDVEERYIVA-KAIKRVTRERKAVTFII----DHDL 446 (538)
T ss_dssp GGCTTSB--GGGCCHHHHHHHHHHHHHHS--CCSEEEEESTTTTCCHHHHHHHH-HHHHHHHHHTTCEEEEE----CSCH
T ss_pred HHHhcCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEeCCccCCCHHHHHHHH-HHHHHHHHhCCCEEEEE----eCCH
Confidence 6543222 245666643 999999999 999999999999 9999999999 99999875 68888888 5888
Q ss_pred cchhHHHhhhHHHH
Q 026486 145 TDVTKFISGCMASL 158 (238)
Q Consensus 145 ~d~~~~~~~~l~~~ 158 (238)
.....+++++++..
T Consensus 447 ~~~~~~aDri~vl~ 460 (538)
T 3ozx_A 447 SIHDYIADRIIVFK 460 (538)
T ss_dssp HHHHHHCSEEEEEE
T ss_pred HHHHHhCCEEEEEe
Confidence 88888888776543
No 37
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.88 E-value=5.2e-24 Score=192.77 Aligned_cols=150 Identities=18% Similarity=0.154 Sum_probs=106.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-------CCCCC-CC-----CCChhhhhh---------HH
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS---------LE 60 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~-----~~~i~~~i~---------~~ 60 (238)
-+++|+||||||||||+++|+|+++ ++|+|.++|.++.. +.++| +| ..++++++. +.
T Consensus 48 e~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~~tv~enl~~~~~~~~~~v~ 126 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIW 126 (390)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCSEEHHHHHCTTCCSCHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCCEEEEcCCcccCccCHHHHhhhccccCHHHHH
Confidence 3689999999999999999999998 89999999987643 22333 22 236777764 67
Q ss_pred HHHHHcCCCCCCchhhh-H--------HhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 026486 61 DVMEELGLGPNGGLIYC-M--------EHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (238)
Q Consensus 61 ~~l~~~~l~~~~~~~~~-~--------~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (238)
++++.+++......... + ..++++++ ++|||+|+. +|++||||||++ ||+..+..+. +.++++.
T Consensus 127 ~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~--~P~lLLLDEPts~LD~~~~~~l~-~~l~~~~- 202 (390)
T 3gd7_A 127 KVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLS--KAKILLLDEPSAHLDPVTYQIIR-RTLKQAF- 202 (390)
T ss_dssp HHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHT--TCCEEEEESHHHHSCHHHHHHHH-HHHHTTT-
T ss_pred HHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhc--CCCEEEEeCCccCCCHHHHHHHH-HHHHHHh-
Confidence 78888888643211111 0 01566654 999999999 999999999999 9999999988 7777763
Q ss_pred CCCeEEEEEecccccccchhHHHhhhHHHHHHHH
Q 026486 129 RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMV 162 (238)
Q Consensus 129 ~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~ 162 (238)
.+.++++++ |... ....++.++++..+.+
T Consensus 203 ~~~tvi~vt----Hd~e-~~~~aDri~vl~~G~i 231 (390)
T 3gd7_A 203 ADCTVILCE----ARIE-AMLECDQFLVIEENKV 231 (390)
T ss_dssp TTSCEEEEC----SSSG-GGTTCSEEEEEETTEE
T ss_pred CCCEEEEEE----cCHH-HHHhCCEEEEEECCEE
Confidence 478887774 6543 2233554444444433
No 38
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.88 E-value=1.9e-23 Score=198.04 Aligned_cols=135 Identities=17% Similarity=0.154 Sum_probs=99.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-------CCCCC-CC-----CCChhhhhh-----------H
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS-----------L 59 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~-----~~~i~~~i~-----------~ 59 (238)
.++|+||||||||||+++|+|+++|++|+|.++|.+... +.++| +| ..+++|++. +
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~ 450 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQI 450 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccccHHHHHhccCCCCCCHHHH
Confidence 689999999999999999999999999999999987632 23444 32 236777663 3
Q ss_pred HHHHHHcCCCCCCch-----h----hhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 026486 60 EDVMEELGLGPNGGL-----I----YCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (238)
Q Consensus 60 ~~~l~~~~l~~~~~~-----~----~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~ 127 (238)
.++++..++.+.... . .....+++|++ ++|||+++. +|+++++||||+ ||+.+.+.+. +.++++.
T Consensus 451 ~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~--~p~illlDEpts~LD~~~~~~i~-~~l~~~~ 527 (582)
T 3b5x_A 451 EQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLR--DAPVLILDEATSALDTESERAIQ-AALDELQ 527 (582)
T ss_pred HHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHc--CCCEEEEECccccCCHHHHHHHH-HHHHHHc
Confidence 455666665321000 0 00123555544 899999999 999999999999 9999999998 8888885
Q ss_pred hCCCeEEEEEecccccccc
Q 026486 128 SRNFNVCAVYLLDSQFITD 146 (238)
Q Consensus 128 ~~~~tvi~v~l~d~~~~~d 146 (238)
+ |+|+++| +|....
T Consensus 528 ~-~~tvi~i----tH~~~~ 541 (582)
T 3b5x_A 528 K-NKTVLVI----AHRLST 541 (582)
T ss_pred C-CCEEEEE----ecCHHH
Confidence 4 8888888 476653
No 39
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.88 E-value=3.1e-23 Score=196.59 Aligned_cols=135 Identities=16% Similarity=0.123 Sum_probs=99.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-------CCCCC-CC-----CCChhhhhh-----------H
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS-----------L 59 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~-----~~~i~~~i~-----------~ 59 (238)
.++|+||||||||||+++|+|+++|++|+|.++|.+... +.++| +| ..+++|++. +
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~ 450 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQI 450 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEccCCcCCCCCHHHHHhccCCCCCCHHHH
Confidence 689999999999999999999999999999999987643 12333 22 236777664 3
Q ss_pred HHHHHHcCCCCCCc-----hh----hhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 026486 60 EDVMEELGLGPNGG-----LI----YCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (238)
Q Consensus 60 ~~~l~~~~l~~~~~-----~~----~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~ 127 (238)
.++++..++.+... .. .....+++|++ ++|||+++. +|+++++||||+ ||+.+.+.+. +.++++.
T Consensus 451 ~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~--~p~illlDEpts~LD~~~~~~i~-~~l~~~~ 527 (582)
T 3b60_A 451 EEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLR--DSPILILDEATSALDTESERAIQ-AALDELQ 527 (582)
T ss_dssp HHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHH--CCSEEEEETTTSSCCHHHHHHHH-HHHHHHH
T ss_pred HHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHh--CCCEEEEECccccCCHHHHHHHH-HHHHHHh
Confidence 45555555532100 00 00123555544 999999999 999999999999 9999999998 8888886
Q ss_pred hCCCeEEEEEecccccccc
Q 026486 128 SRNFNVCAVYLLDSQFITD 146 (238)
Q Consensus 128 ~~~~tvi~v~l~d~~~~~d 146 (238)
+ |+|++++ +|.+..
T Consensus 528 ~-~~tvi~i----tH~~~~ 541 (582)
T 3b60_A 528 K-NRTSLVI----AHRLST 541 (582)
T ss_dssp T-TSEEEEE----CSCGGG
T ss_pred C-CCEEEEE----eccHHH
Confidence 4 8888887 476653
No 40
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.88 E-value=4.9e-23 Score=195.65 Aligned_cols=156 Identities=19% Similarity=0.158 Sum_probs=110.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-------CCCCC-CC-----CCChhhhhh------------
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS------------ 58 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~-----~~~i~~~i~------------ 58 (238)
.++|+||||||||||+++|+|+++|++|+|.++|.++.. +.++| +| ..+++|++.
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~ 451 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAE 451 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEEEECSSCCCCSSBHHHHHHTTSSSTTTSCHH
T ss_pred EEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhceEEEccCCcccCCCHHHHHhhcCCCccccCHH
Confidence 689999999999999999999999999999999987643 12333 22 236777663
Q ss_pred -HHHHHHHcCCCCC-----Cchhhh----HHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 026486 59 -LEDVMEELGLGPN-----GGLIYC----MEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (238)
Q Consensus 59 -~~~~l~~~~l~~~-----~~~~~~----~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~ 125 (238)
++++++..++.+. .+.... ...+++|++ ++|||+++. +|+++|+||||+ ||+.+++.+. +.+++
T Consensus 452 ~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~--~p~illlDEpts~LD~~~~~~i~-~~l~~ 528 (595)
T 2yl4_A 452 EIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLK--NPKILLLDEATSALDAENEYLVQ-EALDR 528 (595)
T ss_dssp HHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHH--CCSEEEEECCCSSCCHHHHHHHH-HHHHH
T ss_pred HHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHc--CCCEEEEECcccCCCHHHHHHHH-HHHHH
Confidence 4456666665311 000000 023555544 999999999 999999999999 9999999998 88888
Q ss_pred HHhCCCeEEEEEecccccccchhHHHhhhHHHHHHHHhhcCCe
Q 026486 126 LKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPH 168 (238)
Q Consensus 126 l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~~~p~ 168 (238)
+.+ ++|++++ +|.+.... .++.+++...|.+....++
T Consensus 529 ~~~-~~tvi~i----tH~~~~~~-~~d~i~~l~~G~i~~~g~~ 565 (595)
T 2yl4_A 529 LMD-GRTVLVI----AHRLSTIK-NANMVAVLDQGKITEYGKH 565 (595)
T ss_dssp HHT-TSEEEEE----CCCHHHHH-HSSEEEEEETTEEEEEECS
T ss_pred Hhc-CCEEEEE----ecCHHHHH-cCCEEEEEECCEEEEECCH
Confidence 865 7888877 57776443 4665555555544433333
No 41
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.87 E-value=4.2e-23 Score=195.58 Aligned_cols=149 Identities=14% Similarity=0.122 Sum_probs=104.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-------CCCCC-CC-----CCChhhhhh----------H
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------L 59 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~-----~~~i~~~i~----------~ 59 (238)
-.++|+||||||||||+++|+|+++|++|+|.++|.|... +.++| +| +.+++|++. +
T Consensus 368 ~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~ 447 (578)
T 4a82_A 368 ETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEV 447 (578)
T ss_dssp CEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHH
T ss_pred CEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCCCCCCHHHH
Confidence 3689999999999999999999999999999999987643 12333 22 237888874 4
Q ss_pred HHHHHHcCCCC------CCchh---hhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 026486 60 EDVMEELGLGP------NGGLI---YCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (238)
Q Consensus 60 ~~~l~~~~l~~------~~~~~---~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~ 127 (238)
.++++..++.+ .|-.. ..-..+++|++ ++|||++.. +|+++++||||+ ||+.+.+.+. +.++++.
T Consensus 448 ~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~--~p~illlDEpts~LD~~~~~~i~-~~l~~~~ 524 (578)
T 4a82_A 448 VEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLN--NPPILILDEATSALDLESESIIQ-EALDVLS 524 (578)
T ss_dssp HHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHH--CCSEEEEESTTTTCCHHHHHHHH-HHHHHHT
T ss_pred HHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHc--CCCEEEEECccccCCHHHHHHHH-HHHHHHc
Confidence 44555554421 11000 00123555554 999999999 999999999999 9999998888 8888884
Q ss_pred hCCCeEEEEEecccccccchhHHHhhhHHHHHH
Q 026486 128 SRNFNVCAVYLLDSQFITDVTKFISGCMASLSA 160 (238)
Q Consensus 128 ~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~ 160 (238)
+++|+++| +|.++.... ++.+++...|
T Consensus 525 -~~~t~i~i----tH~l~~~~~-~d~i~~l~~G 551 (578)
T 4a82_A 525 -KDRTTLIV----AHRLSTITH-ADKIVVIENG 551 (578)
T ss_dssp -TTSEEEEE----CSSGGGTTT-CSEEEEEETT
T ss_pred -CCCEEEEE----ecCHHHHHc-CCEEEEEECC
Confidence 46788777 477664432 4544433333
No 42
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.87 E-value=7.2e-23 Score=194.66 Aligned_cols=151 Identities=13% Similarity=0.143 Sum_probs=105.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-------CCCCC-CC-----CCChhhhhh----------H
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------L 59 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~-----~~~i~~~i~----------~ 59 (238)
-.++|+||||||||||+++|+|+++|++|+|.++|.|... +.++| +| +.+++|++. +
T Consensus 382 ~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~ 461 (598)
T 3qf4_B 382 QKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEI 461 (598)
T ss_dssp CEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSSTTCCTTHH
T ss_pred CEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCccccccHHHHHhcCCCCCCHHHH
Confidence 3689999999999999999999999999999999988643 12233 22 347888774 3
Q ss_pred HHHHHHcCCCC------CCch---hhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 026486 60 EDVMEELGLGP------NGGL---IYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (238)
Q Consensus 60 ~~~l~~~~l~~------~~~~---~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~ 127 (238)
.++++..++.. .|-. -..-..+++|++ ++|||++.. +|+++|+||||+ ||+.+...+. +.++++.
T Consensus 462 ~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~--~p~illlDEpts~LD~~~~~~i~-~~l~~~~ 538 (598)
T 3qf4_B 462 KEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLA--NPKILILDEATSNVDTKTEKSIQ-AAMWKLM 538 (598)
T ss_dssp HHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHT--CCSEEEECCCCTTCCHHHHHHHH-HHHHHHH
T ss_pred HHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEECCccCCCHHHHHHHH-HHHHHHc
Confidence 33443333321 1100 000123555543 899999999 999999999999 9999999998 8888885
Q ss_pred hCCCeEEEEEecccccccchhHHHhhhHHHHHHHH
Q 026486 128 SRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMV 162 (238)
Q Consensus 128 ~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~ 162 (238)
+|+|+++| +|.++.... ++.+++...|.+
T Consensus 539 -~~~t~i~i----tH~l~~~~~-~d~i~~l~~G~i 567 (598)
T 3qf4_B 539 -EGKTSIII----AHRLNTIKN-ADLIIVLRDGEI 567 (598)
T ss_dssp -TTSEEEEE----SCCTTHHHH-CSEEEEECSSSE
T ss_pred -CCCEEEEE----ecCHHHHHc-CCEEEEEECCEE
Confidence 58899888 587765433 554444333333
No 43
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.87 E-value=1.5e-22 Score=190.40 Aligned_cols=145 Identities=18% Similarity=0.150 Sum_probs=107.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceE---------EEeeecCC---------CCCCCC-CCC---------CChh
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTM---------HIVNLDPA---------AENFDY-PVA---------MDIR 54 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i---------~i~~~d~~---------~~~~~~-~~~---------~~i~ 54 (238)
-+++|+||||||||||+|+|+|+++|++|++ .+.|.+.. ...+.+ ++. .++.
T Consensus 48 e~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~ 127 (538)
T 1yqt_A 48 MVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVI 127 (538)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEECSCGGGSGGGCCSBHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhhhhhhhcchhhhccHH
Confidence 3689999999999999999999999999995 23343221 011111 111 1455
Q ss_pred hhh-------hHHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHH
Q 026486 55 ELI-------SLEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD 124 (238)
Q Consensus 55 ~~i-------~~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~ 124 (238)
+++ .++++++.+|+....... ...++++++ ++||++|+. +|++|||||||+ ||+.++..++ ++++
T Consensus 128 e~~~~~~~~~~~~~~l~~lgl~~~~~~~--~~~LSgGekQRv~iAraL~~--~P~lLlLDEPTs~LD~~~~~~l~-~~L~ 202 (538)
T 1yqt_A 128 ELLKKADETGKLEEVVKALELENVLERE--IQHLSGGELQRVAIAAALLR--NATFYFFDEPSSYLDIRQRLNAA-RAIR 202 (538)
T ss_dssp HHHHHHCSSSCHHHHHHHTTCTTTTTSB--GGGCCHHHHHHHHHHHHHHS--CCSEEEEESTTTTCCHHHHHHHH-HHHH
T ss_pred HHHhhhhHHHHHHHHHHHcCCChhhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEECCcccCCHHHHHHHH-HHHH
Confidence 544 277899999997643222 345666654 999999999 999999999999 9999999999 9999
Q ss_pred HHHhCCCeEEEEEecccccccchhHHHhhhHH
Q 026486 125 HLKSRNFNVCAVYLLDSQFITDVTKFISGCMA 156 (238)
Q Consensus 125 ~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~ 156 (238)
++++.|.++|+| +|.+.....+++.+++
T Consensus 203 ~l~~~g~tvi~v----sHd~~~~~~~~dri~v 230 (538)
T 1yqt_A 203 RLSEEGKSVLVV----EHDLAVLDYLSDIIHV 230 (538)
T ss_dssp HHHHTTCEEEEE----CSCHHHHHHHCSEEEE
T ss_pred HHHhcCCEEEEE----eCCHHHHHHhCCEEEE
Confidence 997778899888 5777766667666554
No 44
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.87 E-value=1.4e-22 Score=192.83 Aligned_cols=145 Identities=19% Similarity=0.185 Sum_probs=109.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCC--CCCCCCCCCCChhhhhh------------HHHHHHHcCCC
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--AENFDYPVAMDIRELIS------------LEDVMEELGLG 69 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~--~~~~~~~~~~~i~~~i~------------~~~~l~~~~l~ 69 (238)
+++|+||||||||||+++|+|+++|++|+|.+. ..++ .+.....+..++.+++. +.++++.+++.
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~-~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~ 462 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD-LTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGII 462 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCC-CCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCT
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCceEEEEe-eEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCc
Confidence 689999999999999999999999999998751 1110 01111123445555432 45678889997
Q ss_pred CCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH-hCCCeEEEEEeccccccc
Q 026486 70 PNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK-SRNFNVCAVYLLDSQFIT 145 (238)
Q Consensus 70 ~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~-~~~~tvi~v~l~d~~~~~ 145 (238)
+..... ...+++|++ ++||++|+. +|++|||||||+ ||+.++..++ ++++++. +.|.++++| +|.+.
T Consensus 463 ~~~~~~--~~~LSGGe~QRv~iAraL~~--~p~lLlLDEPt~~LD~~~~~~l~-~~l~~l~~~~g~tvi~v----sHd~~ 533 (607)
T 3bk7_A 463 DLYDRN--VEDLSGGELQRVAIAATLLR--DADIYLLDEPSAYLDVEQRLAVS-RAIRHLMEKNEKTALVV----EHDVL 533 (607)
T ss_dssp TTTTSB--GGGCCHHHHHHHHHHHHHTS--CCSEEEEECTTTTCCHHHHHHHH-HHHHHHHHHTTCEEEEE----CSCHH
T ss_pred hHhcCC--hhhCCHHHHHHHHHHHHHHh--CCCEEEEeCCccCCCHHHHHHHH-HHHHHHHHhCCCEEEEE----eCCHH
Confidence 543322 245666654 999999999 999999999999 9999999999 9999986 468899888 58888
Q ss_pred chhHHHhhhHHHH
Q 026486 146 DVTKFISGCMASL 158 (238)
Q Consensus 146 d~~~~~~~~l~~~ 158 (238)
....+++.+++..
T Consensus 534 ~~~~~adrv~vl~ 546 (607)
T 3bk7_A 534 MIDYVSDRLIVFE 546 (607)
T ss_dssp HHHHHCSEEEEEE
T ss_pred HHHHhCCEEEEEc
Confidence 8888888766553
No 45
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.87 E-value=6.5e-23 Score=194.63 Aligned_cols=136 Identities=18% Similarity=0.192 Sum_probs=98.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-------CCCCC-CC-----CCChhhhhh----------H
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------L 59 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~-----~~~i~~~i~----------~ 59 (238)
-.++|+||||||||||+++|+|+++|++|+|.++|.|... +.++| +| +.+++|++. +
T Consensus 370 e~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~ 449 (587)
T 3qf4_A 370 SLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEI 449 (587)
T ss_dssp CEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCSSCCHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEEECCCCcCcCccHHHHHhccCCCCCHHHH
Confidence 3689999999999999999999999999999999988643 12333 22 236777764 3
Q ss_pred HHHHHHcCCCC------CCch---hhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 026486 60 EDVMEELGLGP------NGGL---IYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (238)
Q Consensus 60 ~~~l~~~~l~~------~~~~---~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~ 127 (238)
.++++..++.+ .|-. -..-..+++|++ ++|||++.. +|+++|+||||+ ||+.+.+.+. +.++++.
T Consensus 450 ~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~--~p~illlDEpts~LD~~~~~~i~-~~l~~~~ 526 (587)
T 3qf4_A 450 VEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVK--KPKVLILDDCTSSVDPITEKRIL-DGLKRYT 526 (587)
T ss_dssp HHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHT--CCSEEEEESCCTTSCHHHHHHHH-HHHHHHS
T ss_pred HHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHc--CCCEEEEECCcccCCHHHHHHHH-HHHHHhC
Confidence 33444443311 1000 000023555544 999999999 999999999999 9999999999 8888874
Q ss_pred hCCCeEEEEEecccccccc
Q 026486 128 SRNFNVCAVYLLDSQFITD 146 (238)
Q Consensus 128 ~~~~tvi~v~l~d~~~~~d 146 (238)
+|+|+++| +|.++.
T Consensus 527 -~~~tvi~i----tH~l~~ 540 (587)
T 3qf4_A 527 -KGCTTFII----TQKIPT 540 (587)
T ss_dssp -TTCEEEEE----ESCHHH
T ss_pred -CCCEEEEE----ecChHH
Confidence 58899888 476653
No 46
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.86 E-value=3.5e-22 Score=190.09 Aligned_cols=144 Identities=18% Similarity=0.177 Sum_probs=106.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceE---------EEeeecCC---------CCCCCC-CC---------CCChhh
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTM---------HIVNLDPA---------AENFDY-PV---------AMDIRE 55 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i---------~i~~~d~~---------~~~~~~-~~---------~~~i~~ 55 (238)
+++|+||||||||||+++|+|+++|++|++ .+.|.++. ...+.+ ++ ..++.+
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e 198 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRE 198 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHH
T ss_pred EEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhhhhhcceEEeechhhhchhhccccHHH
Confidence 689999999999999999999999999995 23343321 011111 11 114555
Q ss_pred hh-------hHHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 026486 56 LI-------SLEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (238)
Q Consensus 56 ~i-------~~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~ 125 (238)
++ .++++++.+|+....... ...++++++ ++||++|+. +|++|||||||+ ||+.++..++ +++++
T Consensus 199 ~l~~~~~~~~~~~~L~~lgL~~~~~~~--~~~LSGGekQRvaIAraL~~--~P~lLlLDEPTs~LD~~~~~~l~-~~L~~ 273 (607)
T 3bk7_A 199 LLKKVDEVGKFEEVVKELELENVLDRE--LHQLSGGELQRVAIAAALLR--KAHFYFFDEPSSYLDIRQRLKVA-RVIRR 273 (607)
T ss_dssp HHHHTCCSSCHHHHHHHTTCTTGGGSB--GGGCCHHHHHHHHHHHHHHS--CCSEEEEECTTTTCCHHHHHHHH-HHHHH
T ss_pred HhhhhHHHHHHHHHHHHcCCCchhCCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEECCcccCCHHHHHHHH-HHHHH
Confidence 54 278899999997643222 345666654 999999999 999999999999 9999999999 99999
Q ss_pred HHhCCCeEEEEEecccccccchhHHHhhhHH
Q 026486 126 LKSRNFNVCAVYLLDSQFITDVTKFISGCMA 156 (238)
Q Consensus 126 l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~ 156 (238)
++++|.++|+| +|.+.....+++.+++
T Consensus 274 l~~~g~tvIiv----sHdl~~~~~~adri~v 300 (607)
T 3bk7_A 274 LANEGKAVLVV----EHDLAVLDYLSDVIHV 300 (607)
T ss_dssp HHHTTCEEEEE----CSCHHHHHHHCSEEEE
T ss_pred HHhcCCEEEEE----ecChHHHHhhCCEEEE
Confidence 97778899888 5777666666665543
No 47
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.86 E-value=3.2e-22 Score=187.97 Aligned_cols=144 Identities=16% Similarity=0.105 Sum_probs=106.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceE-----------EEeeecCCC-------C------CCCCC---C---CCC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTM-----------HIVNLDPAA-------E------NFDYP---V---AMD 52 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i-----------~i~~~d~~~-------~------~~~~~---~---~~~ 52 (238)
-+++|+||||||||||+|+|+|+++|++|+| .+.|.+... . ...|. + ..+
T Consensus 26 ei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (538)
T 3ozx_A 26 TILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKFLKGT 105 (538)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGGTTCCSB
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhhhhccCc
Confidence 4789999999999999999999999999998 344443310 0 11121 1 113
Q ss_pred hhhhh-------hHHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHH
Q 026486 53 IRELI-------SLEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (238)
Q Consensus 53 i~~~i-------~~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~l 122 (238)
+++.+ .++++++.+++....... ...++++++ ++||++++. +|++|||||||+ ||+.++..++ ++
T Consensus 106 v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~--~~~LSgGe~Qrv~iA~aL~~--~p~illlDEPts~LD~~~~~~l~-~~ 180 (538)
T 3ozx_A 106 VNEILTKIDERGKKDEVKELLNMTNLWNKD--ANILSGGGLQRLLVAASLLR--EADVYIFDQPSSYLDVRERMNMA-KA 180 (538)
T ss_dssp HHHHHHHHCCSSCHHHHHHHTTCGGGTTSB--GGGCCHHHHHHHHHHHHHHS--CCSEEEEESTTTTCCHHHHHHHH-HH
T ss_pred HHHHhhcchhHHHHHHHHHHcCCchhhcCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEECCcccCCHHHHHHHH-HH
Confidence 44433 277899999987543222 245666644 999999999 999999999999 9999999999 99
Q ss_pred HHHHHhCCCeEEEEEecccccccchhHHHhhhHH
Q 026486 123 VDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMA 156 (238)
Q Consensus 123 l~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~ 156 (238)
++++++ |.++|+| +|.+.....+++.+.+
T Consensus 181 l~~l~~-g~tii~v----sHdl~~~~~~~d~i~v 209 (538)
T 3ozx_A 181 IRELLK-NKYVIVV----DHDLIVLDYLTDLIHI 209 (538)
T ss_dssp HHHHCT-TSEEEEE----CSCHHHHHHHCSEEEE
T ss_pred HHHHhC-CCEEEEE----EeChHHHHhhCCEEEE
Confidence 999965 8898888 5887776666665544
No 48
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.86 E-value=1.3e-22 Score=190.69 Aligned_cols=146 Identities=18% Similarity=0.177 Sum_probs=107.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCC--CCCCCCCCCCChhhhhh------------HHHHHHHcCC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--AENFDYPVAMDIRELIS------------LEDVMEELGL 68 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~--~~~~~~~~~~~i~~~i~------------~~~~l~~~~l 68 (238)
-+++|+||||||||||+++|+|+++|++|+|.+. ..++ .+.....+..++.+++. +.++++.+++
T Consensus 313 e~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~-~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l 391 (538)
T 1yqt_A 313 EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWD-LTVAYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLGI 391 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCC-CCEEEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC-ceEEEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCC
Confidence 3689999999999999999999999999998751 1110 01111123345555432 3455666777
Q ss_pred CCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CCCeEEEEEecccccc
Q 026486 69 GPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNVCAVYLLDSQFI 144 (238)
Q Consensus 69 ~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~~tvi~v~l~d~~~~ 144 (238)
.+..... ...++++.+ ++||++++. +|++|||||||+ ||+.++..++ ++++++.+ .|.++|+| +|.+
T Consensus 392 ~~~~~~~--~~~LSGGe~qrv~lAraL~~--~p~lLlLDEPt~~LD~~~~~~i~-~~l~~l~~~~g~tvi~v----sHd~ 462 (538)
T 1yqt_A 392 IDLYDRE--VNELSGGELQRVAIAATLLR--DADIYLLDEPSAYLDVEQRLAVS-RAIRHLMEKNEKTALVV----EHDV 462 (538)
T ss_dssp GGGTTSB--GGGCCHHHHHHHHHHHHHTS--CCSEEEEECTTTTCCHHHHHHHH-HHHHHHHHHHTCEEEEE----CSCH
T ss_pred hhhhcCC--hhhCCHHHHHHHHHHHHHHh--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhCCCEEEEE----eCCH
Confidence 5432222 235666544 999999999 999999999999 9999999999 99999864 58899888 5888
Q ss_pred cchhHHHhhhHHHH
Q 026486 145 TDVTKFISGCMASL 158 (238)
Q Consensus 145 ~d~~~~~~~~l~~~ 158 (238)
.....+++.+++..
T Consensus 463 ~~~~~~~drv~vl~ 476 (538)
T 1yqt_A 463 LMIDYVSDRLMVFE 476 (538)
T ss_dssp HHHHHHCSEEEEEE
T ss_pred HHHHHhCCEEEEEe
Confidence 88888888776654
No 49
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.86 E-value=3.6e-22 Score=189.91 Aligned_cols=161 Identities=13% Similarity=0.092 Sum_probs=114.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCC--CCCCCCCCCCChhhhh------------hHHHHHHHcCCC
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--AENFDYPVAMDIRELI------------SLEDVMEELGLG 69 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~--~~~~~~~~~~~i~~~i------------~~~~~l~~~~l~ 69 (238)
+++|+||||||||||+++|+|+++|++|+.. .+..++ .+........++++++ .++++++.+++.
T Consensus 380 iv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~-~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~ 458 (608)
T 3j16_B 380 ILVMMGENGTGKTTLIKLLAGALKPDEGQDI-PKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRID 458 (608)
T ss_dssp EEEEESCTTSSHHHHHHHHHTSSCCSBCCCC-CSCCEEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTST
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCCcCc-cCCcEEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCCh
Confidence 5899999999999999999999999999621 110000 0111111112344433 156788899987
Q ss_pred CCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH-hCCCeEEEEEeccccccc
Q 026486 70 PNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK-SRNFNVCAVYLLDSQFIT 145 (238)
Q Consensus 70 ~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~-~~~~tvi~v~l~d~~~~~ 145 (238)
+...... ..+++|++ ++||++|+. +|++|||||||+ ||+.++..++ ++++++. +.|.|+++| +|.+.
T Consensus 459 ~~~~~~~--~~LSGGqkQRv~iAraL~~--~p~lLlLDEPT~gLD~~~~~~i~-~ll~~l~~~~g~tviiv----tHdl~ 529 (608)
T 3j16_B 459 DIIDQEV--QHLSGGELQRVAIVLALGI--PADIYLIDEPSAYLDSEQRIICS-KVIRRFILHNKKTAFIV----EHDFI 529 (608)
T ss_dssp TTSSSBS--SSCCHHHHHHHHHHHHTTS--CCSEEEECCTTTTCCHHHHHHHH-HHHHHHHHHHTCEEEEE----CSCHH
T ss_pred hhhcCCh--hhCCHHHHHHHHHHHHHHh--CCCEEEEECCCCCCCHHHHHHHH-HHHHHHHHhCCCEEEEE----eCCHH
Confidence 6533322 34666543 999999999 999999999999 9999999999 9999986 458999888 58888
Q ss_pred chhHHHhhhHHHHH--HHHhhcCCeeeeecc
Q 026486 146 DVTKFISGCMASLS--AMVQLELPHVNILSK 174 (238)
Q Consensus 146 d~~~~~~~~l~~~~--~~~~~~~p~~~vlsk 174 (238)
....+++++++... +.+....++-.+++.
T Consensus 530 ~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 530 MATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp HHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred HHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 88888888876543 444445555566554
No 50
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.85 E-value=7.7e-23 Score=178.50 Aligned_cols=144 Identities=17% Similarity=0.105 Sum_probs=95.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeec-CCCCCCCCCCCCChhhhhh--------HHHHHHHcCCCCC---
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-PAAENFDYPVAMDIRELIS--------LEDVMEELGLGPN--- 71 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d-~~~~~~~~~~~~~i~~~i~--------~~~~l~~~~l~~~--- 71 (238)
+++|+||||||||||+++|+|+++|++|+|.++|.- ...+...+++ .++++++. +.++++.+++...
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~i~~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~l~~~l~~ 144 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIMP-GTIKENIIGVSYDEYRYRSVIKACQLEEDISK 144 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCSCEEEECSSCCCCS-SBHHHHHHTTCCCHHHHHHHHHHTTCHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEEEEEeCCCccCc-ccHHHHhhCcccchHHHHHHHHHhChHHHHHh
Confidence 689999999999999999999999999999997721 0011112222 37777663 2334444444211
Q ss_pred ---Cch---hhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHH-HHHHHhCCCeEEEEEeccc
Q 026486 72 ---GGL---IYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF-VDHLKSRNFNVCAVYLLDS 141 (238)
Q Consensus 72 ---~~~---~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~l-l~~l~~~~~tvi~v~l~d~ 141 (238)
+.. ......++++++ ++||++++. +|+++||||||+ ||+.++..++ ++ ++++. .|.++|++ +
T Consensus 145 ~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~--~p~lllLDEPts~LD~~~~~~i~-~~ll~~~~-~~~tviiv----t 216 (290)
T 2bbs_A 145 FAEKDNIVLGEGGITLSGGQRARISLARAVYK--DADLYLLDSPFGYLDVLTEKEIF-ESCVCKLM-ANKTRILV----T 216 (290)
T ss_dssp STTGGGCBC----CCCCHHHHHHHHHHHHHHS--CCSEEEEESTTTTCCHHHHHHHH-HHCCCCCT-TTSEEEEE----C
T ss_pred ccccccchhcCccCcCCHHHHHHHHHHHHHHC--CCCEEEEECCcccCCHHHHHHHH-HHHHHHhh-CCCEEEEE----e
Confidence 000 000124555544 899999999 999999999999 9999999888 64 44553 47888777 4
Q ss_pred ccccchhHHHhhhHHH
Q 026486 142 QFITDVTKFISGCMAS 157 (238)
Q Consensus 142 ~~~~d~~~~~~~~l~~ 157 (238)
|.+... .+++.+++.
T Consensus 217 Hd~~~~-~~~d~i~~l 231 (290)
T 2bbs_A 217 SKMEHL-KKADKILIL 231 (290)
T ss_dssp CCHHHH-HHSSEEEEE
T ss_pred cCHHHH-HcCCEEEEE
Confidence 776543 235544443
No 51
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.84 E-value=9.8e-22 Score=186.90 Aligned_cols=145 Identities=14% Similarity=0.121 Sum_probs=105.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEE-----------EeeecCCC-------CCC------CCCC---------C
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMH-----------IVNLDPAA-------ENF------DYPV---------A 50 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~-----------i~~~d~~~-------~~~------~~~~---------~ 50 (238)
+++|+||||||||||+|+|+|+++|++|+|. +.|.+... ... .|.. .
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPV 184 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECCCTTTHHHHCSSSS
T ss_pred EEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHHHHhhhhhhchhhhhhhhhhhcchh
Confidence 6899999999999999999999999999972 22221100 011 1100 0
Q ss_pred CChhhhh---------hHHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHH
Q 026486 51 MDIRELI---------SLEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (238)
Q Consensus 51 ~~i~~~i---------~~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~ 118 (238)
.++.+.+ .++++++.+|+....... ...++++++ ++||++++. +|+++||||||+ ||+.++..+
T Consensus 185 ~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~--~~~LSgGe~Qrv~iAraL~~--~p~llllDEPts~LD~~~~~~l 260 (608)
T 3j16_B 185 QKVGELLKLRMEKSPEDVKRYIKILQLENVLKRD--IEKLSGGELQRFAIGMSCVQ--EADVYMFDEPSSYLDVKQRLNA 260 (608)
T ss_dssp SHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSC--TTTCCHHHHHHHHHHHHHHS--CCSEEEEECTTTTCCHHHHHHH
T ss_pred hHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCC--hHHCCHHHHHHHHHHHHHHh--CCCEEEEECcccCCCHHHHHHH
Confidence 0122221 377889999997543222 234666543 999999999 999999999999 999999999
Q ss_pred HHHHHHHHHhCCCeEEEEEecccccccchhHHHhhhHHH
Q 026486 119 LRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMAS 157 (238)
Q Consensus 119 ~~~ll~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~ 157 (238)
+ +++++++++|.++|+| +|.+.....+++.+++.
T Consensus 261 ~-~~l~~l~~~g~tvi~v----tHdl~~~~~~~drv~vl 294 (608)
T 3j16_B 261 A-QIIRSLLAPTKYVICV----EHDLSVLDYLSDFVCII 294 (608)
T ss_dssp H-HHHHGGGTTTCEEEEE----CSCHHHHHHHCSEEEEE
T ss_pred H-HHHHHHHhCCCEEEEE----eCCHHHHHHhCCEEEEE
Confidence 9 9999998778898888 58887777777666543
No 52
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.81 E-value=5.8e-21 Score=194.93 Aligned_cols=148 Identities=14% Similarity=0.156 Sum_probs=105.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-------CCCCC-CC-----CCChhhhhh------------
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS------------ 58 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~-----~~~i~~~i~------------ 58 (238)
+++|+||||||||||+++|.|+++|++|+|.++|.|... ..++| +| +.++++++.
T Consensus 1061 ~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~ 1140 (1284)
T 3g5u_A 1061 TLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEE 1140 (1284)
T ss_dssp EEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECCCCccccccHHHHHhccCCCCCCCHHH
Confidence 689999999999999999999999999999999988753 23444 33 346777763
Q ss_pred HHHHHHHcCCC------CCCchhh----hHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 026486 59 LEDVMEELGLG------PNGGLIY----CMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (238)
Q Consensus 59 ~~~~l~~~~l~------~~~~~~~----~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~ 125 (238)
+.+.++..++. |.+ ... .-..+++|++ ++|||++.. +|++|||||||+ ||+.+.+.+. +.+++
T Consensus 1141 i~~~~~~~~~~~~i~~l~~g-ldt~vge~G~~LSgGq~Qrv~iARal~~--~p~iLiLDEpTs~lD~~~~~~i~-~~l~~ 1216 (1284)
T 3g5u_A 1141 IVRAAKEANIHQFIDSLPDK-YNTRVGDKGTQLSGGQKQRIAIARALVR--QPHILLLDEATSALDTESEKVVQ-EALDK 1216 (1284)
T ss_dssp HHHHHHHHTCHHHHSSTTTG-GGCBCSTTSCSSCHHHHHHHHHHHHHHH--CCSSEEEESCSSSCCHHHHHHHH-HHHHH
T ss_pred HHHHHHHhCcHHHHHhCccc-cccccCCCCCccCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHH
Confidence 33444444432 111 000 0013555543 999999999 999999999999 9999999888 88877
Q ss_pred HHhCCCeEEEEEecccccccchhHHHhhhHHHHHHH
Q 026486 126 LKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAM 161 (238)
Q Consensus 126 l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~ 161 (238)
+ ..|+|+++| +|.++.... ++++++...|.
T Consensus 1217 ~-~~~~tvi~i----sH~l~~i~~-~dri~vl~~G~ 1246 (1284)
T 3g5u_A 1217 A-REGRTCIVI----AHRLSTIQN-ADLIVVIQNGK 1246 (1284)
T ss_dssp H-SSSSCEEEE----CSCTTGGGS-CSEEEEEETBE
T ss_pred h-CCCCEEEEE----ecCHHHHHc-CCEEEEEECCE
Confidence 6 458899888 577765433 55444433333
No 53
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.80 E-value=1.4e-20 Score=192.49 Aligned_cols=136 Identities=18% Similarity=0.248 Sum_probs=100.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-------CCCCC-CCC-----CChhhhhh------------
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PVA-----MDIRELIS------------ 58 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~~-----~~i~~~i~------------ 58 (238)
.+||+||+|||||||+++|.|+++|++|+|.++|.|... ..+++ +|+ -|+++|+.
T Consensus 1107 ~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~e 1186 (1321)
T 4f4c_A 1107 TLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQ 1186 (1321)
T ss_dssp EEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTTTSCHHH
T ss_pred EEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCCCCCCCHHH
Confidence 589999999999999999999999999999999998854 33444 332 35788753
Q ss_pred HHHHHHHcCCC------CCCchhhhH----HhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 026486 59 LEDVMEELGLG------PNGGLIYCM----EHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (238)
Q Consensus 59 ~~~~l~~~~l~------~~~~~~~~~----~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~ 125 (238)
+.++++..++. |.| ..... ..+++|++ ++||||+.. +|++|||||||+ ||+.+.+.+. +.+++
T Consensus 1187 i~~Al~~a~l~~~I~~Lp~G-ldT~vge~G~~LSgGQrQriaiARAllr--~~~ILiLDEaTSaLD~~tE~~Iq-~~l~~ 1262 (1321)
T 4f4c_A 1187 VEEAARLANIHNFIAELPEG-FETRVGDRGTQLSGGQKQRIAIARALVR--NPKILLLDEATSALDTESEKVVQ-EALDR 1262 (1321)
T ss_dssp HHHHHHHTTCHHHHHTSTTT-TCSEETTTSCSSCHHHHHHHHHHHHHHS--CCSEEEEESCCCSTTSHHHHHHH-HHHTT
T ss_pred HHHHHHHhCChHHHHcCcCC-CCCEecCCCcccCHHHHHHHHHHHHHHh--CCCEEEEeCccccCCHHHHHHHH-HHHHH
Confidence 55566665552 111 00000 13555544 899999999 999999999998 9999988877 66666
Q ss_pred HHhCCCeEEEEEecccccccchh
Q 026486 126 LKSRNFNVCAVYLLDSQFITDVT 148 (238)
Q Consensus 126 l~~~~~tvi~v~l~d~~~~~d~~ 148 (238)
+. +++|+|+| +|.++...
T Consensus 1263 ~~-~~~TvI~I----AHRLsTi~ 1280 (1321)
T 4f4c_A 1263 AR-EGRTCIVI----AHRLNTVM 1280 (1321)
T ss_dssp TS-SSSEEEEE----CSSSSTTT
T ss_pred Hc-CCCEEEEe----ccCHHHHH
Confidence 53 57899888 68876443
No 54
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.80 E-value=1.7e-20 Score=191.55 Aligned_cols=160 Identities=16% Similarity=0.146 Sum_probs=110.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-------CCCCC-CC-----CCChhhhhh----------HH
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------LE 60 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~-----~~~i~~~i~----------~~ 60 (238)
.++|+||||||||||+++|.|+++|++|+|.++|.|+.. ..++| +| .-+++|++. +.
T Consensus 418 ~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~ 497 (1284)
T 3g5u_A 418 TVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIE 497 (1284)
T ss_dssp EEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSSCCHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCCCCCHHHHH
Confidence 689999999999999999999999999999999987643 11233 22 337888875 23
Q ss_pred HHHHHcCCC------CCCchh---hhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 026486 61 DVMEELGLG------PNGGLI---YCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (238)
Q Consensus 61 ~~l~~~~l~------~~~~~~---~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (238)
++++..++. |.+-.. ..-..+++|++ ++|||++.. +|+++||||||+ ||+.+.+.+. +.++.+.
T Consensus 498 ~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~--~p~iliLDEpts~LD~~~~~~i~-~~l~~~~- 573 (1284)
T 3g5u_A 498 KAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVR--NPKILLLDEATSALDTESEAVVQ-AALDKAR- 573 (1284)
T ss_dssp HHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHH--CCSEEEEESTTCSSCHHHHHHHH-HHHHHHH-
T ss_pred HHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhc--CCCEEEEECCCCCCCHHHHHHHH-HHHHHHc-
Confidence 333333321 110000 00013555544 999999999 999999999999 9999988877 7777764
Q ss_pred CCCeEEEEEecccccccchhHHHhhhHHHHHHHHhhcCCeeeee
Q 026486 129 RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNIL 172 (238)
Q Consensus 129 ~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~~~p~~~vl 172 (238)
+|+|+|+| +|.++.... ++.+++...|.+....+|-+++
T Consensus 574 ~~~t~i~i----tH~l~~i~~-~d~i~vl~~G~i~~~g~~~~l~ 612 (1284)
T 3g5u_A 574 EGRTTIVI----AHRLSTVRN-ADVIAGFDGGVIVEQGNHDELM 612 (1284)
T ss_dssp TTSEEEEE----CSCHHHHTT-CSEEEECSSSCCCCEECHHHHH
T ss_pred CCCEEEEE----ecCHHHHHc-CCEEEEEECCEEEEECCHHHHH
Confidence 58899888 577765544 5666666566555554544433
No 55
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.79 E-value=5.9e-20 Score=187.92 Aligned_cols=155 Identities=17% Similarity=0.201 Sum_probs=113.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-------CCCCC-CC-----CCChhhhhh----------HH
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------LE 60 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~-----~~~i~~~i~----------~~ 60 (238)
.++|+||+|||||||+++|.|+++|++|+|.++|.|+.. +.++| +| +-||+|||. +.
T Consensus 446 ~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~ 525 (1321)
T 4f4c_A 446 TVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMV 525 (1321)
T ss_dssp EEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHH
T ss_pred EEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhcccchHHHHH
Confidence 589999999999999999999999999999999988754 12344 22 446888875 44
Q ss_pred HHHHHcCC---------------CCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHH
Q 026486 61 DVMEELGL---------------GPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (238)
Q Consensus 61 ~~l~~~~l---------------~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~l 122 (238)
++++..++ |+.| ..+++|++ ++||||+.. +|+++||||||+ ||..+.+.+. +.
T Consensus 526 ~a~~~a~l~~~i~~lp~G~~T~vGe~G------~~LSGGQkQRiaiARAl~~--~~~IliLDE~tSaLD~~te~~i~-~~ 596 (1321)
T 4f4c_A 526 AACKMANAEKFIKTLPNGYNTLVGDRG------TQLSGGQKQRIAIARALVR--NPKILLLDEATSALDAESEGIVQ-QA 596 (1321)
T ss_dssp HHHHHTTCHHHHHHSTTTTSSEESSSS------CCCCHHHHHHHHHHHHHTT--CCSEEEEESTTTTSCTTTHHHHH-HH
T ss_pred HHHHHccchhHHHcCCCCCccEecCCC------CCCCHHHHHHHHHHHHHcc--CCCEEEEecccccCCHHHHHHHH-HH
Confidence 44444433 2222 23555554 999999999 999999999999 9999987777 77
Q ss_pred HHHHHhCCCeEEEEEecccccccchhHHHhhhHHHHHHHHhhcCCeeeeec
Q 026486 123 VDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILS 173 (238)
Q Consensus 123 l~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~~~p~~~vls 173 (238)
++++. +|+|+|+| +|.++... .++.+++...|.+.-.++|-+.+.
T Consensus 597 l~~~~-~~~T~iii----aHrls~i~-~aD~Iivl~~G~ive~Gth~eL~~ 641 (1321)
T 4f4c_A 597 LDKAA-KGRTTIII----AHRLSTIR-NADLIISCKNGQVVEVGDHRALMA 641 (1321)
T ss_dssp HHHHH-TTSEEEEE----CSCTTTTT-TCSEEEEEETTEEEEEECHHHHHT
T ss_pred HHHHh-CCCEEEEE----cccHHHHH-hCCEEEEeeCCeeeccCCHHHHHH
Confidence 77774 57898888 47776443 356666666666655555544443
No 56
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.78 E-value=1.2e-19 Score=174.50 Aligned_cols=86 Identities=10% Similarity=0.028 Sum_probs=63.4
Q ss_pred HHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCC--EEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 026486 62 VMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDD--YLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (238)
Q Consensus 62 ~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~--~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~tvi~v 136 (238)
+++.+|++....... ...++++++ ++||++|+. +|+ +|||||||+ ||+.++..++ +++++++++|.|+|+|
T Consensus 185 ~l~~~gL~~~~~~~~-~~~LSGGe~QRv~iArAL~~--~p~~~lLlLDEPtsgLD~~~~~~l~-~~l~~l~~~g~tvi~v 260 (670)
T 3ux8_A 185 FLQNVGLDYLTLSRS-AGTLSGGEAQRIRLATQIGS--RLTGVLYVLDEPSIGLHQRDNDRLI-ATLKSMRDLGNTLIVV 260 (670)
T ss_dssp HHHHTTCTTCCTTCB-GGGSCHHHHHHHHHHHHHHT--CCCSCEEEEECTTTTCCGGGHHHHH-HHHHHHHHTTCEEEEE
T ss_pred HHHHcCCchhhhcCC-cccCCHHHHHHHHHHHHHhh--CCCCCEEEEECCccCCCHHHHHHHH-HHHHHHHHcCCEEEEE
Confidence 377788865321111 245666654 999999999 888 999999999 9999999999 9999998789999888
Q ss_pred EecccccccchhHHHhhhHH
Q 026486 137 YLLDSQFITDVTKFISGCMA 156 (238)
Q Consensus 137 ~l~d~~~~~d~~~~~~~~l~ 156 (238)
+|.+.. ..+++.+++
T Consensus 261 ----tHd~~~-~~~~d~ii~ 275 (670)
T 3ux8_A 261 ----EHDEDT-MLAADYLID 275 (670)
T ss_dssp ----CCCHHH-HHHCSEEEE
T ss_pred ----eCCHHH-HhhCCEEEE
Confidence 366543 234555543
No 57
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.77 E-value=7.7e-20 Score=180.79 Aligned_cols=89 Identities=15% Similarity=0.065 Sum_probs=62.0
Q ss_pred HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEE
Q 026486 59 LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCA 135 (238)
Q Consensus 59 ~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~tvi~ 135 (238)
++++++.+|+.+..........+++|++ ++||++++. +|++|||||||+ ||+.+...+. +.+++ .+.++|+
T Consensus 880 i~~~Le~lGL~~~~~~~~~~~~LSGGQkQRVaLArAL~~--~P~LLLLDEPT~gLD~~s~~~L~-~~L~~---~g~tVIi 953 (986)
T 2iw3_A 880 IEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQ--RPHLIVLDEPTNYLDRDSLGALS-KALKE---FEGGVII 953 (986)
T ss_dssp HHHHHHHTTCCHHHHHHSCGGGCCHHHHHHHHHHHHHTT--CCSEEEEECGGGTCCHHHHHHHH-HHHHS---CSSEEEE
T ss_pred HHHHHHHcCCCchhhcCCCccccCHHHHHHHHHHHHHHh--CCCEEEEECCccCCCHHHHHHHH-HHHHH---hCCEEEE
Confidence 5677888888642101111245666654 899999999 999999999999 9999987766 55543 3668877
Q ss_pred EEecccccccchhHHHhhhHHH
Q 026486 136 VYLLDSQFITDVTKFISGCMAS 157 (238)
Q Consensus 136 v~l~d~~~~~d~~~~~~~~l~~ 157 (238)
| +|.......+++.++..
T Consensus 954 I----SHD~e~v~~l~DrVivL 971 (986)
T 2iw3_A 954 I----THSAEFTKNLTEEVWAV 971 (986)
T ss_dssp E----CSCHHHHTTTCCEEECC
T ss_pred E----ECCHHHHHHhCCEEEEE
Confidence 7 57776666666655443
No 58
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.75 E-value=1.6e-19 Score=150.25 Aligned_cols=130 Identities=18% Similarity=0.206 Sum_probs=74.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeee--cC--CCCCCCC-CCCCChhhhh-hH-HHHHHHc-CCCCCCchh
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL--DP--AAENFDY-PVAMDIRELI-SL-EDVMEEL-GLGPNGGLI 75 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~--d~--~~~~~~~-~~~~~i~~~i-~~-~~~l~~~-~l~~~~~~~ 75 (238)
+++|+||||||||||+++|+|+ +|++|+|..... +. ....++| +|+. ++++ .. ......+ +........
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~--~enl~~~~~~~~~~~~~~~~~~~~~ 100 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPAVEAGEKLGFLPGTL--NEKIDPYLRPLHDALRDMVEPEVIP 100 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECSCCTTCCCCSSCC--------CTTTHHHHHHHTTTSCTTHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCchhhhcceEEecCCH--HHHHHHHHHHHHHHHHHhccHHHHH
Confidence 6899999999999999999999 999999854211 11 1234666 4432 3333 11 0011111 100000000
Q ss_pred hhHHh-hhhhHHHHHHHHHhccCCCCEEEEeCCCcccHHhHHHHHHHHHHHHHhCCCeEEEEEeccccccc
Q 026486 76 YCMEH-LEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFIT 145 (238)
Q Consensus 76 ~~~~~-~~~~~s~~la~~l~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~tvi~v~l~d~~~~~ 145 (238)
..++. +...++++||++++. +|+++||||||+- ++..++ ++++++ ++|.+++ ++ ||...+.
T Consensus 101 ~~l~~glGq~qrv~lAraL~~--~p~lllLDEPts~---~~~~l~-~~l~~l-~~g~tii-vt-Hd~~~~~ 162 (208)
T 3b85_A 101 KLMEAGIVEVAPLAYMRGRTL--NDAFVILDEAQNT---TPAQMK-MFLTRL-GFGSKMV-VT-GDITQVD 162 (208)
T ss_dssp HHHHTTSEEEEEGGGGTTCCB--CSEEEEECSGGGC---CHHHHH-HHHTTB-CTTCEEE-EE-EC-----
T ss_pred HHHHhCCchHHHHHHHHHHhc--CCCEEEEeCCccc---cHHHHH-HHHHHh-cCCCEEE-EE-CCHHHHh
Confidence 01111 011123899999999 9999999999977 777777 888877 5677877 63 4444333
No 59
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.74 E-value=2.2e-18 Score=170.45 Aligned_cols=144 Identities=15% Similarity=0.164 Sum_probs=96.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHh-CCc--C--CCceEEEeeecCCCCCCCCCCCCChhhhhh---------HHHHHHHcCC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYR-HCE--T--VRRTMHIVNLDPAAENFDYPVAMDIRELIS---------LEDVMEELGL 68 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g-~l~--~--~~G~i~i~~~d~~~~~~~~~~~~~i~~~i~---------~~~~l~~~~l 68 (238)
-+++|+||||||||||+|+|+| .+. + ....+.+...++ ....+..++.+++. +.++++.+|+
T Consensus 462 e~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~~~~~v~q~~----~~~~~~ltv~e~l~~~~~~~~~~v~~~L~~lgL 537 (986)
T 2iw3_A 462 RRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHDI----DGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGF 537 (986)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSCEEETTCCC----CCCCTTSBHHHHHHTTCSSCHHHHHHHHHHTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCCccccceeEEEEcccc----cccccCCcHHHHHHHhhcCHHHHHHHHHHHcCC
Confidence 3689999999999999999995 210 0 001111111110 01223445655542 6678899998
Q ss_pred CCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEEeccccccc
Q 026486 69 GPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFIT 145 (238)
Q Consensus 69 ~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~tvi~v~l~d~~~~~ 145 (238)
.... .......+++|++ ++||++++. +|++|||||||+ ||+.++..+. +++++ .|.++|+| +|...
T Consensus 538 ~~~~-~~~~~~~LSGGqkQRvaLArAL~~--~P~lLLLDEPTs~LD~~~~~~l~-~~L~~---~g~tvIiv----SHdl~ 606 (986)
T 2iw3_A 538 TDEM-IAMPISALSGGWKMKLALARAVLR--NADILLLDEPTNHLDTVNVAWLV-NYLNT---CGITSITI----SHDSV 606 (986)
T ss_dssp CHHH-HHSBGGGCCHHHHHHHHHHHHHHT--TCSEEEEESTTTTCCHHHHHHHH-HHHHH---SCSEEEEE----CSCHH
T ss_pred Chhh-hcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEECCccCCCHHHHHHHH-HHHHh---CCCEEEEE----ECCHH
Confidence 5211 1111245666654 999999999 999999999999 9999999988 77776 57888887 57777
Q ss_pred chhHHHhhhHHHHHHH
Q 026486 146 DVTKFISGCMASLSAM 161 (238)
Q Consensus 146 d~~~~~~~~l~~~~~~ 161 (238)
....+++.++....+.
T Consensus 607 ~l~~~adrii~L~~G~ 622 (986)
T 2iw3_A 607 FLDNVCEYIINYEGLK 622 (986)
T ss_dssp HHHHHCSEEEEEETTE
T ss_pred HHHHhCCEEEEEECCe
Confidence 7777776665544443
No 60
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.72 E-value=3.6e-18 Score=164.25 Aligned_cols=89 Identities=16% Similarity=0.129 Sum_probs=64.5
Q ss_pred HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCC---CEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCe
Q 026486 59 LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDD---DYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFN 132 (238)
Q Consensus 59 ~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p---~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~t 132 (238)
..+.++.+++........ ...++++++ ++||++|+. +| ++||+||||+ ||+.+...++ +++++++++|.|
T Consensus 523 ~~~~l~~~~l~~~~~~~~-~~~LSgG~~qrv~iAraL~~--~p~~p~llllDEPt~~LD~~~~~~i~-~~l~~l~~~g~t 598 (670)
T 3ux8_A 523 KLETLYDVGLGYMKLGQP-ATTLSGGEAQRVKLAAELHR--RSNGRTLYILDEPTTGLHVDDIARLL-DVLHRLVDNGDT 598 (670)
T ss_dssp HHHHHHHTTCTTSBTTCC-GGGCCHHHHHHHHHHHHHHS--CCCSCEEEEEESTTTTCCHHHHHHHH-HHHHHHHHTTCE
T ss_pred HHHHHHHcCCchhhccCC-chhCCHHHHHHHHHHHHHhh--CCCCCcEEEEeCCCCCCCHHHHHHHH-HHHHHHHHCCCE
Confidence 446677788864321111 245666654 999999998 66 5999999999 9999999999 999999878999
Q ss_pred EEEEEecccccccchhHHHhhhHH
Q 026486 133 VCAVYLLDSQFITDVTKFISGCMA 156 (238)
Q Consensus 133 vi~v~l~d~~~~~d~~~~~~~~l~ 156 (238)
+|+| +|.+... .+++.+++
T Consensus 599 vi~v----tHd~~~~-~~~d~i~~ 617 (670)
T 3ux8_A 599 VLVI----EHNLDVI-KTADYIID 617 (670)
T ss_dssp EEEE----CCCHHHH-TTCSEEEE
T ss_pred EEEE----eCCHHHH-HhCCEEEE
Confidence 9888 4766533 33554443
No 61
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.72 E-value=1.4e-18 Score=139.82 Aligned_cols=55 Identities=13% Similarity=0.081 Sum_probs=45.3
Q ss_pred HHHHHHHHhccCCCCEEEEeCCCc-ccHH----------------hHHHHHHHHHHHHHhCCCeEEEEEecccccccch
Q 026486 86 DDWLAEELDNYLDDDYLVFDCPGQ-IELF----------------THVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDV 147 (238)
Q Consensus 86 s~~la~~l~~~~~p~~lilDEPt~-LD~~----------------~~~~~~~~ll~~l~~~~~tvi~v~l~d~~~~~d~ 147 (238)
+++||+++.. +|++++||||++ ||+. .+..+. +++++++++|.++++++ |.+.+.
T Consensus 91 rv~iAral~~--~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~-~~l~~l~~~g~tvi~vt----H~~~~~ 162 (171)
T 4gp7_A 91 LIEMAKDYHC--FPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMK-KSIKGLQREGFRYVYIL----NSPEEV 162 (171)
T ss_dssp HHHHHHHTTC--EEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHH-HHSTTHHHHTCSEEEEE----CSHHHH
T ss_pred HHHHHHHcCC--cEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhh-hhhhhHHhcCCcEEEEe----CCHHHh
Confidence 3899999999 999999999998 9999 557777 88888876799998884 665543
No 62
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.72 E-value=7.4e-19 Score=162.22 Aligned_cols=121 Identities=15% Similarity=0.143 Sum_probs=81.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCc-e-EEEeeecCCCCCCCC-CCC---------CChhhhhh-------------
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRR-T-MHIVNLDPAAENFDY-PVA---------MDIRELIS------------- 58 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G-~-i~i~~~d~~~~~~~~-~~~---------~~i~~~i~------------- 58 (238)
+++|+||||||||||+|+|+|+++|++| + |.++| ++. +.+.| +++ .++++++.
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg-~~~-~~i~~vpq~~~l~~~~~~~tv~eni~~~~~~~~~~~~~~ 217 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL-DPQ-QPIFTVPGCISATPISDILDAQLPTWGQSLTSGATLLHN 217 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC-CTT-SCSSSCSSCCEEEECCSCCCTTCTTCSCBCBSSCCSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC-Ccc-CCeeeeccchhhcccccccchhhhhcccccccCcchHHH
Confidence 6899999999999999999999999999 8 99887 443 23333 222 23443321
Q ss_pred HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHH--HhccCCCCE----EEEeC-CCc-ccHHhHHHHHHHHHHHHHh
Q 026486 59 LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEE--LDNYLDDDY----LVFDC-PGQ-IELFTHVPVLRNFVDHLKS 128 (238)
Q Consensus 59 ~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~--l~~~~~p~~----lilDE-Pt~-LD~~~~~~~~~~ll~~l~~ 128 (238)
+.++++.+|+..... ...++++++ +++|++ ++. +|++ +|+|| |++ ||+. +..+. +++++
T Consensus 218 ~~~ll~~~gl~~~~~----~~~LSgGq~qrlalAra~rL~~--~p~i~~sGLlLDEpPts~LD~~-~~~l~-~l~~~--- 286 (460)
T 2npi_A 218 KQPMVKNFGLERINE----NKDLYLECISQLGQVVGQRLHL--DPQVRRSGCIVDTPSISQLDEN-LAELH-HIIEK--- 286 (460)
T ss_dssp BCCEECCCCSSSGGG----CHHHHHHHHHHHHHHHHHHHHH--CHHHHHSCEEEECCCGGGSCSS-CHHHH-HHHHH---
T ss_pred HHHHHHHhCCCcccc----hhhhhHHHHHHHHHHHHHHhcc--CcccCcceEEEeCCcccccChh-HHHHH-HHHHH---
Confidence 223344455543321 234555543 889999 999 9999 99999 998 9998 43333 44433
Q ss_pred CCCeEEEEE
Q 026486 129 RNFNVCAVY 137 (238)
Q Consensus 129 ~~~tvi~v~ 137 (238)
.+.++++|.
T Consensus 287 ~~~tviiVt 295 (460)
T 2npi_A 287 LNVNIMLVL 295 (460)
T ss_dssp TTCCEEEEE
T ss_pred hCCCEEEEE
Confidence 467777773
No 63
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.68 E-value=8.1e-16 Score=130.39 Aligned_cols=224 Identities=23% Similarity=0.431 Sum_probs=147.1
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCCCCCCCCCCCChhhhhhHHHHHHHcCCCCCCchhhhHHhh
Q 026486 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (238)
Q Consensus 2 ~~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~~ 81 (238)
..++++.|..|+||||++..++..+. .+.++.+.+.||.....++.+..++++.++.++++.. ++++++....+.+..
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 91 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMRE-GYGPNGAIVESYDRL 91 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTT-TCCHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhc-cCCCCCcEEecHHHH
Confidence 47889999999999999999998887 6678999999998777777666666676677777766 666665544433222
Q ss_pred hhhHHHHHHHHHhccC-CCCEEEEeCCCcccHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccchhHHHhhhHHHHHH
Q 026486 82 EDNLDDWLAEELDNYL-DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSA 160 (238)
Q Consensus 82 ~~~~s~~la~~l~~~~-~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~ 160 (238)
.... .++.+.+.... +.+++|+|.|++.+......+...+.+.+ .. .++++++|+....++..+..........
T Consensus 92 ~~~~-~~l~~~l~~~~~~~d~iiiDtpG~~~~~~~~~l~~~~~~~~---~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~ 166 (262)
T 1yrb_A 92 MEKF-NEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLMENL---PY-PLVVYISDPEILKKPNDYCFVRFFALLI 166 (262)
T ss_dssp HTTH-HHHHHHHHHHHHHCSEEEEECCSSHHHHHHSHHHHHHHHTS---SS-CEEEEEECGGGCCSHHHHHHHHHHHHHH
T ss_pred hhhH-HHHHHHHHHHhhcCCEEEEeCCCccchhhhhhhHHHHHHHH---hh-ceEEeccchhhhcCHHHHHHHHHHHHHH
Confidence 2222 33333332210 46899999999987766544442333333 22 5566778888777777766544333333
Q ss_pred HHhhcCCeeeeecccccccchhhh---hhhcccCHHHHHHHhh-hccchhHHHHHHHHHHHHhhCCC-ceeEEeeccCCC
Q 026486 161 MVQLELPHVNILSKMDLVTNKKEI---EDYLNPESQFLLSELN-QHMAPQFAKLNKSLIELVDEYSM-VSFMPLDLRKES 235 (238)
Q Consensus 161 ~~~~~~p~~~vlsk~dll~~~~~l---~~~~~~~~~~l~~~l~-~~~~~~~~~l~~~i~~~i~~~~~-~~~~~l~~~~~~ 235 (238)
....+.|.+-|+||+|+.... .. +.++. +...+.+.+. ++...+|.++ ++++++++++. ..++|++..+.+
T Consensus 167 ~~~~~~p~~iv~NK~D~~~~~-~~~~~~~~l~-~~~~~~~~l~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~SA~~~~ 242 (262)
T 1yrb_A 167 DLRLGATTIPALNKVDLLSEE-EKERHRKYFE-DIDYLTARLKLDPSMQGLMAY--KMCSMMTEVLPPVRVLYLSAKTRE 242 (262)
T ss_dssp HHHHTSCEEEEECCGGGCCHH-HHHHHHHHHH-CHHHHHHHHHHCCSHHHHHHH--HHHHHHHHHSCCCCCEECCTTTCT
T ss_pred hcccCCCeEEEEecccccccc-cHHHHHHHHh-ChHHHHHHHhccccccchhHh--HHHHHHHHhcCcccceEEEecCcc
Confidence 455688999999999998654 22 22221 2333333332 1223466665 78888988876 489999987766
Q ss_pred C
Q 026486 236 R 236 (238)
Q Consensus 236 ~ 236 (238)
.
T Consensus 243 g 243 (262)
T 1yrb_A 243 G 243 (262)
T ss_dssp T
T ss_pred c
Confidence 4
No 64
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.68 E-value=2.4e-17 Score=133.87 Aligned_cols=132 Identities=11% Similarity=0.055 Sum_probs=75.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecC-------CCCCCCC-CCCCChhhhhhHHHHHHHcCCCCCCchh
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP-------AAENFDY-PVAMDIRELISLEDVMEELGLGPNGGLI 75 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~-------~~~~~~~-~~~~~i~~~i~~~~~l~~~~l~~~~~~~ 75 (238)
.++|+||||||||||+++|+|++. +.+.|.+. ....++| +++.+..+++ +..++..+.....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~~~~~~~-----~~~~~~~~~~~~~ 71 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITTEGKKKI-----FSSKFFTSKKLVG 71 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEETTCCEEE-----EEETTCCCSSEET
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecCcHHHHH-----HHhhcCCcccccc
Confidence 478999999999999999999985 33444322 1123344 2222222221 1111211110000
Q ss_pred hhHHhhhhhHH--HHHHHH-----HhccCCCCEEEEeC--CCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEEeccccccc
Q 026486 76 YCMEHLEDNLD--DWLAEE-----LDNYLDDDYLVFDC--PGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFIT 145 (238)
Q Consensus 76 ~~~~~~~~~~s--~~la~~-----l~~~~~p~~lilDE--Pt~-LD~~~~~~~~~~ll~~l~~~~~tvi~v~l~d~~~~~ 145 (238)
.....++++++ +.+|++ +.. +|+++++|| |++ +|+..+..+. +++++ .+.+++++ .|.+|...
T Consensus 72 ~~~~~lSgG~~qr~~la~aa~~~~l~~--~p~llilDEigp~~~ld~~~~~~l~-~~l~~---~~~~~i~~-~H~~h~~~ 144 (178)
T 1ye8_A 72 SYGVNVQYFEELAIPILERAYREAKKD--RRKVIIIDEIGKMELFSKKFRDLVR-QIMHD---PNVNVVAT-IPIRDVHP 144 (178)
T ss_dssp TEEECHHHHHHHHHHHHHHHHHHHHHC--TTCEEEECCCSTTGGGCHHHHHHHH-HHHTC---TTSEEEEE-CCSSCCSH
T ss_pred ccccCcCHHHHHHHHHHhhcccccccc--CCCEEEEeCCCCcccCCHHHHHHHH-HHHhc---CCCeEEEE-EccCCCch
Confidence 00112444433 788996 888 999999999 999 9999887666 55443 45556555 45566655
Q ss_pred chhHHHh
Q 026486 146 DVTKFIS 152 (238)
Q Consensus 146 d~~~~~~ 152 (238)
....+++
T Consensus 145 ~~~~i~~ 151 (178)
T 1ye8_A 145 LVKEIRR 151 (178)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 4444433
No 65
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.66 E-value=6.2e-18 Score=153.94 Aligned_cols=145 Identities=14% Similarity=0.104 Sum_probs=98.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCCCCC----CCCCCCChhhhh-------hHHHHHHHcCCCCC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENF----DYPVAMDIRELI-------SLEDVMEELGLGPN 71 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~----~~~~~~~i~~~i-------~~~~~l~~~~l~~~ 71 (238)
.+++|+||||||||||+|+|+|+.+|++|+|.+.|.+...... +..+.+++.|+. .++++++.+++...
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~ 149 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEY 149 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGGC
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCcc
Confidence 3789999999999999999999999999999988865422111 111223333322 37889999988654
Q ss_pred CchhhhHHhhhhh----HHHHHHHHHhcc--------CCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH-----hCC---
Q 026486 72 GGLIYCMEHLEDN----LDDWLAEELDNY--------LDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK-----SRN--- 130 (238)
Q Consensus 72 ~~~~~~~~~~~~~----~s~~la~~l~~~--------~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~-----~~~--- 130 (238)
..... ++++ +++.+|+++... .+|+++++||||+ ||+..+.+++ ++++++. +.|
T Consensus 150 ~~~~~----lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~-~~l~~l~~~~l~~~g~~~ 224 (413)
T 1tq4_A 150 DFFII----ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVL-QDIRLNCVNTFRENGIAE 224 (413)
T ss_dssp SEEEE----EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHH-HHHHHHHHHHHHHTTCSS
T ss_pred CCeEE----eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHH-HHHHHHHHHHHHhcCCCC
Confidence 22111 2222 348888888762 2688999999999 9999999998 8888874 333
Q ss_pred CeEEEEEecccccccc--hhHHHhhhH
Q 026486 131 FNVCAVYLLDSQFITD--VTKFISGCM 155 (238)
Q Consensus 131 ~tvi~v~l~d~~~~~d--~~~~~~~~l 155 (238)
.+++ ++++|...+ ...+++.+.
T Consensus 225 ~~ii---liSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 225 PPIF---LLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp CCEE---ECCTTCTTSTTHHHHHHHHH
T ss_pred CcEE---EEecCcCCccCHHHHHHHHH
Confidence 2333 356787776 777776664
No 66
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.63 E-value=7e-17 Score=158.06 Aligned_cols=86 Identities=22% Similarity=0.138 Sum_probs=64.8
Q ss_pred HHHHHHHcCCCCCC-chhhhHHhhhhhHH--HHHHHHHhccCC---CCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCC
Q 026486 59 LEDVMEELGLGPNG-GLIYCMEHLEDNLD--DWLAEELDNYLD---DDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNF 131 (238)
Q Consensus 59 ~~~~l~~~~l~~~~-~~~~~~~~~~~~~s--~~la~~l~~~~~---p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~ 131 (238)
+.++++.+|++... +.. ...++++.+ +.||++|+. + |+++||||||+ ||+..+..++ ++++++++.|.
T Consensus 710 ~~~~L~~~gL~~~~l~~~--~~~LSGGekQRv~LAraL~~--~p~~p~lLILDEPTsGLD~~~~~~l~-~lL~~L~~~G~ 784 (842)
T 2vf7_A 710 ALDTLREVGLGYLRLGQP--ATELSGGEAQRIKLATELRR--SGRGGTVYVLDEPTTGLHPADVERLQ-RQLVKLVDAGN 784 (842)
T ss_dssp HHHHHHHTTCTTSBTTCC--GGGCCHHHHHHHHHHHTTSS--CCSSCEEEEEECTTTTCCHHHHHHHH-HHHHHHHHTTC
T ss_pred HHHHHHHcCCCcccccCC--cccCCHHHHHHHHHHHHHHh--CCCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhCCC
Confidence 46788889997632 111 234666543 899999988 7 69999999999 9999999999 99999988899
Q ss_pred eEEEEEecccccccchhHHHhhh
Q 026486 132 NVCAVYLLDSQFITDVTKFISGC 154 (238)
Q Consensus 132 tvi~v~l~d~~~~~d~~~~~~~~ 154 (238)
+||+| +|.+... ..++.+
T Consensus 785 tVIvi----sHdl~~i-~~aDri 802 (842)
T 2vf7_A 785 TVIAV----EHKMQVV-AASDWV 802 (842)
T ss_dssp EEEEE----CCCHHHH-TTCSEE
T ss_pred EEEEE----cCCHHHH-HhCCEE
Confidence 99888 4776544 334433
No 67
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.59 E-value=5.1e-16 Score=153.12 Aligned_cols=79 Identities=19% Similarity=0.192 Sum_probs=60.0
Q ss_pred HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHHhccCCC---CEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCe
Q 026486 59 LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDD---DYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFN 132 (238)
Q Consensus 59 ~~~~l~~~~l~~~~~~~~~~~~~~~~~--s~~la~~l~~~~~p---~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~t 132 (238)
..++++.+|++....... ...+++|. +++||++|+. +| +++||||||+ ||+.+.+.++ ++++++.++|.|
T Consensus 785 ~~~~L~~vGL~~~~lgq~-~~~LSGGErQRV~LAraL~~--~p~~p~LLILDEPTsGLD~~~~~~L~-~lL~~L~~~G~T 860 (916)
T 3pih_A 785 TLQVLHDVGLGYVKLGQP-ATTLSGGEAQRIKLASELRK--RDTGRTLYILDEPTVGLHFEDVRKLV-EVLHRLVDRGNT 860 (916)
T ss_dssp HHHHHHHTTGGGSBTTCC-STTCCHHHHHHHHHHHHHTS--CCCSSEEEEEESTTTTCCHHHHHHHH-HHHHHHHHTTCE
T ss_pred HHHHHHHcCCchhhccCC-ccCCCHHHHHHHHHHHHHhh--CCCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhcCCE
Confidence 456778888864211111 13466654 3899999987 54 7999999999 9999999999 999999878999
Q ss_pred EEEEEeccccccc
Q 026486 133 VCAVYLLDSQFIT 145 (238)
Q Consensus 133 vi~v~l~d~~~~~ 145 (238)
+|+| +|.+.
T Consensus 861 VIvI----~HdL~ 869 (916)
T 3pih_A 861 VIVI----EHNLD 869 (916)
T ss_dssp EEEE----CCCHH
T ss_pred EEEE----eCCHH
Confidence 9888 47764
No 68
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.59 E-value=6.4e-15 Score=130.47 Aligned_cols=118 Identities=19% Similarity=0.191 Sum_probs=80.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCCCCCCCCCCCChhhhhhHHHHHHHcCCCCCCchhhhHHhhhh
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLED 83 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~~~~ 83 (238)
.++|+||||||||||+++|+|+++|++|.|.+.|.+. +..++ .++.+.+- .| + ..
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e----~~~~~---~~~~i~~~-----~g----g---------g~ 227 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEE----IVFKH---HKNYTQLF-----FG----G---------NI 227 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCC----CCCSS---CSSEEEEE-----CB----T---------TB
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeec----ccccc---chhEEEEE-----eC----C---------Ch
Confidence 6899999999999999999999999999999998541 11110 01111000 00 1 12
Q ss_pred hHHHHHHHHHhccCCCCEEEEeCCCcccHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccchhHHHhhhHHHHHH
Q 026486 84 NLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSA 160 (238)
Q Consensus 84 ~~s~~la~~l~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~ 160 (238)
.++.+|++++.. +|+++++|||++- ++. +.++.+...+.+++++ +|..+ ....+++++....+
T Consensus 228 ~~r~~la~aL~~--~p~ilildE~~~~------e~~-~~l~~~~~g~~tvi~t----~H~~~-~~~~~dri~~l~~g 290 (330)
T 2pt7_A 228 TSADCLKSCLRM--RPDRIILGELRSS------EAY-DFYNVLCSGHKGTLTT----LHAGS-SEEAFIRLANMSSS 290 (330)
T ss_dssp CHHHHHHHHTTS--CCSEEEECCCCST------HHH-HHHHHHHTTCCCEEEE----EECSS-HHHHHHHHHHHHHT
T ss_pred hHHHHHHHHhhh--CCCEEEEcCCChH------HHH-HHHHHHhcCCCEEEEE----EcccH-HHHHhhhheehhcC
Confidence 244899999999 9999999999982 244 6677775434456555 36555 66777777665444
No 69
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.59 E-value=6.2e-15 Score=126.52 Aligned_cols=117 Identities=20% Similarity=0.147 Sum_probs=79.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCC-CceEEEeeecCCCCCCCCCCC-CC-hhhhhhHHHHHHHcCCCCCCchhhhHH
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETV-RRTMHIVNLDPAAENFDYPVA-MD-IRELISLEDVMEELGLGPNGGLIYCME 79 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~-~G~i~i~~~d~~~~~~~~~~~-~~-i~~~i~~~~~l~~~~l~~~~~~~~~~~ 79 (238)
-+++|+||||||||||+++++|+++|+ +|+|.++|.++... ++. .. +.+ ..+|+.+
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~----~~~~~~~v~q--------~~~gl~~--------- 84 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYV----FKHKKSIVNQ--------REVGEDT--------- 84 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSC----CCCSSSEEEE--------EEBTTTB---------
T ss_pred CEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceee----cCCcceeeeH--------HHhCCCH---------
Confidence 368999999999999999999999998 99999998664210 111 00 000 1233322
Q ss_pred hhhhhHHHHHHHHHhccCCCCEEEEeCCCcccHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccchhHHHhhhHHH
Q 026486 80 HLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMAS 157 (238)
Q Consensus 80 ~~~~~~s~~la~~l~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~ 157 (238)
..++.++++++.. +|+++++|||+ |+.+...+ ++.. +.|.+++++. |... ...++++++..
T Consensus 85 ---~~l~~~la~aL~~--~p~illlDEp~--D~~~~~~~----l~~~-~~g~~vl~t~----H~~~-~~~~~dri~~l 145 (261)
T 2eyu_A 85 ---KSFADALRAALRE--DPDVIFVGEMR--DLETVETA----LRAA-ETGHLVFGTL----HTNT-AIDTIHRIVDI 145 (261)
T ss_dssp ---SCHHHHHHHHHHH--CCSEEEESCCC--SHHHHHHH----HHHH-HTTCEEEEEE----CCSS-HHHHHHHHHHT
T ss_pred ---HHHHHHHHHHHhh--CCCEEEeCCCC--CHHHHHHH----HHHH-ccCCEEEEEe----Ccch-HHHHHHHHhhh
Confidence 1245899999999 99999999999 87775433 3333 4577776663 5543 55666666543
No 70
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.58 E-value=2e-15 Score=132.19 Aligned_cols=122 Identities=11% Similarity=0.129 Sum_probs=81.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-------------CCCCC-CCCC-------ChhhhhhHHH
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------------ENFDY-PVAM-------DIRELISLED 61 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------------~~~~~-~~~~-------~i~~~i~~~~ 61 (238)
.+++++|||||||||+++.|+|+++|++|+|.+.|.|+.. ..++| ++.. ++++++....
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e~l~~~~ 180 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRGK 180 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHHHHHHHHHH
Confidence 5799999999999999999999999999999999988642 13444 3322 2344433211
Q ss_pred -------HHHHcCCCCCCchhhhHHhhhhhHHHHHHHHHhccCCCC--EEEEeCCCc-ccHHhHHHHHHHHHHHHH-hCC
Q 026486 62 -------VMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDD--YLVFDCPGQ-IELFTHVPVLRNFVDHLK-SRN 130 (238)
Q Consensus 62 -------~l~~~~l~~~~~~~~~~~~~~~~~s~~la~~l~~~~~p~--~lilDEPt~-LD~~~~~~~~~~ll~~l~-~~~ 130 (238)
+++.+|+.+... ..+..++ .+++.+|+++.. +|+ ++++| ||+ +|+..+. +.++ +.|
T Consensus 181 ~~~~d~~lldt~gl~~~~~--~~~~eLS-kqr~~iaral~~--~P~e~lLvLD-ptsglD~~~~~-------~~~~~~~g 247 (302)
T 3b9q_A 181 EEGYDVVLCDTSGRLHTNY--SLMEELI-ACKKAVGKIVSG--APNEILLVLD-GNTGLNMLPQA-------REFNEVVG 247 (302)
T ss_dssp HTTCSEEEECCCCCSSCCH--HHHHHHH-HHHHHHHTTSTT--CCSEEEEEEE-GGGGGGGHHHH-------HHHHHHTC
T ss_pred HcCCcchHHhcCCCCcchh--HHHHHHH-HHHHHHHHhhcc--CCCeeEEEEe-CCCCcCHHHHH-------HHHHHhcC
Confidence 122233333221 1123343 344899999999 999 99999 998 9987542 3344 358
Q ss_pred CeEEEEE
Q 026486 131 FNVCAVY 137 (238)
Q Consensus 131 ~tvi~v~ 137 (238)
.++++++
T Consensus 248 ~t~iiiT 254 (302)
T 3b9q_A 248 ITGLILT 254 (302)
T ss_dssp CCEEEEE
T ss_pred CCEEEEe
Confidence 8887774
No 71
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.57 E-value=3.2e-15 Score=135.22 Aligned_cols=52 Identities=19% Similarity=0.036 Sum_probs=45.3
Q ss_pred hhhhHH--HHHHHHHhccCCC--CEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 026486 81 LEDNLD--DWLAEELDNYLDD--DYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (238)
Q Consensus 81 ~~~~~s--~~la~~l~~~~~p--~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~tvi~v 136 (238)
+++|.+ +.||++++. +| ++|||||||+ ||+.+...+. ++++++. +|.++++|
T Consensus 296 lSgGe~qrl~lA~~l~~--~~~~~~LlLDEpt~~LD~~~~~~l~-~~L~~l~-~~~~vi~i 352 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVL--GADTPSVVFDEVDAGIGGAAAIAVA-EQLSRLA-DTRQVLVV 352 (415)
T ss_dssp SCHHHHHHHHHHHHHHH--CCSSSEEEESSTTTTCCHHHHHHHH-HHHHHHT-TTSEEEEE
T ss_pred cCHhHHHHHHHHHHHHh--CCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHh-CCCEEEEE
Confidence 355543 889999998 99 9999999999 9999999999 9999986 58888888
No 72
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.57 E-value=5.5e-16 Score=147.58 Aligned_cols=156 Identities=17% Similarity=0.109 Sum_probs=85.4
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCcC-CCceEEEeeecCC----------CCCCCC-CCCC------ChhhhhhHHHHHHHc
Q 026486 5 QLVIGPAGSGKSTYCSSLYRHCET-VRRTMHIVNLDPA----------AENFDY-PVAM------DIRELISLEDVMEEL 66 (238)
Q Consensus 5 v~IiGpnGSGKSTLl~~l~g~l~~-~~G~i~i~~~d~~----------~~~~~~-~~~~------~i~~~i~~~~~l~~~ 66 (238)
++|+||||||||||+++|+|+..| ++|.|.+.|.++. ...++| +++. ++++++.. ....+
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~--~~~~~ 125 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINK--AQNAI 125 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHH--HHHHH
T ss_pred EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHH--HHHHh
Confidence 799999999999999999999988 7999999887631 122344 3322 23443321 11222
Q ss_pred CCCCCCchhhhHHhhhhhHHHHHHHHHhccCCCCEEEEeCC------Cc-ccHHhHHHHHHHHHHHHHhCCCe-EEEEEe
Q 026486 67 GLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCP------GQ-IELFTHVPVLRNFVDHLKSRNFN-VCAVYL 138 (238)
Q Consensus 67 ~l~~~~~~~~~~~~~~~~~s~~la~~l~~~~~p~~lilDEP------t~-LD~~~~~~~~~~ll~~l~~~~~t-vi~v~l 138 (238)
+....+ ..... ..++.+... .|+++++||| ++ +|+..+..+. ++++++.+++.+ ++++.
T Consensus 126 ~~~~~~--------~s~~~-i~l~i~~~~--~p~LlLlDePGi~~~~t~~LD~~~~~~i~-~li~~~l~~~~~iil~vv- 192 (608)
T 3szr_A 126 AGEGMG--------ISHEL-ITLEISSRD--VPDLTLIDLPGITRVAVGNQPADIGYKIK-TLIKKYIQRQETISLVVV- 192 (608)
T ss_dssp HCSSSC--------CCSCC-EEEEEEESS--SCCEEEEECCC------CCSSCSHHHHHH-HHHHHHTTSSSCCEEEEE-
T ss_pred cCCccc--------cchHH-HHHHhcCCC--CCceeEeeCCCccccccCCCCHHHHHHHH-HHHHHHHhcCCCCceEEE-
Confidence 211111 00000 111112223 7999999999 88 9999999988 999987543323 33332
Q ss_pred cccccccchhHHHhhhHHHHHHHHhhcCCeeeeecccccccc
Q 026486 139 LDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN 180 (238)
Q Consensus 139 ~d~~~~~d~~~~~~~~l~~~~~~~~~~~p~~~vlsk~dll~~ 180 (238)
+|...-....+ +-.....-..+.+.+-|++|.|++.+
T Consensus 193 --t~~~d~a~~~~---l~la~~v~~~g~rtI~VlTK~Dlv~~ 229 (608)
T 3szr_A 193 --PSNVDIATTEA---LSMAQEVDPEGDRTIGILTKPDLVDK 229 (608)
T ss_dssp --ESSSCTTTCHH---HHHHHHHCSSCCSEEEEEECGGGSSS
T ss_pred --eccchhccHHH---HHHHHHHhhcCCceEEEecchhhcCc
Confidence 23333221111 11112222346789999999999964
No 73
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.56 E-value=5.1e-14 Score=126.00 Aligned_cols=122 Identities=12% Similarity=0.150 Sum_probs=82.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-------------CCCCC-CCCCC-------hhhhhhHHH
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------------ENFDY-PVAMD-------IRELISLED 61 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------------~~~~~-~~~~~-------i~~~i~~~~ 61 (238)
.+++|+|||||||||+++.|+|+++|++|+|.+.|.|+.. ..++| ++... +++++....
T Consensus 158 ~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e~l~~~~ 237 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRGK 237 (359)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhhHHHHHHHHH
Confidence 5799999999999999999999999999999999988632 13444 33222 334433211
Q ss_pred -------HHHHcCCCCCCchhhhHHhhhhhHHHHHHHHHhccCCCC--EEEEeCCCc-ccHHhHHHHHHHHHHHHH-hCC
Q 026486 62 -------VMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDD--YLVFDCPGQ-IELFTHVPVLRNFVDHLK-SRN 130 (238)
Q Consensus 62 -------~l~~~~l~~~~~~~~~~~~~~~~~s~~la~~l~~~~~p~--~lilDEPt~-LD~~~~~~~~~~ll~~l~-~~~ 130 (238)
+++.+|+.+... ..+..++ .+++.+|+++.. +|+ +|++| ||+ +|+..+. +.+. +.|
T Consensus 238 ~~~~d~~lldt~Gl~~~~~--~~~~eLS-kqr~~iaral~~--~P~e~lLvLD-pttglD~~~~~-------~~~~~~~g 304 (359)
T 2og2_A 238 EEGYDVVLCDTSGRLHTNY--SLMEELI-ACKKAVGKIVSG--APNEILLVLD-GNTGLNMLPQA-------REFNEVVG 304 (359)
T ss_dssp HTTCSEEEEECCCCSSCCH--HHHHHHH-HHHHHHHHHSTT--CCSEEEEEEE-GGGGGGGHHHH-------HHHHHHTC
T ss_pred hCCCHHHHHHhcCCChhhh--hHHHHHH-HHHHHHHHHHhc--CCCceEEEEc-CCCCCCHHHHH-------HHHHHhcC
Confidence 112233333221 1123343 344899999999 999 99999 998 9987652 3344 358
Q ss_pred CeEEEEE
Q 026486 131 FNVCAVY 137 (238)
Q Consensus 131 ~tvi~v~ 137 (238)
.++++++
T Consensus 305 ~t~iiiT 311 (359)
T 2og2_A 305 ITGLILT 311 (359)
T ss_dssp CCEEEEE
T ss_pred CeEEEEe
Confidence 8887774
No 74
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.55 E-value=1.3e-15 Score=149.92 Aligned_cols=79 Identities=18% Similarity=0.204 Sum_probs=61.3
Q ss_pred HHHHHHHcCCCC-CCchhhhHHhhhhhHH--HHHHHHHhccCC---CCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCC
Q 026486 59 LEDVMEELGLGP-NGGLIYCMEHLEDNLD--DWLAEELDNYLD---DDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNF 131 (238)
Q Consensus 59 ~~~~l~~~~l~~-~~~~~~~~~~~~~~~s--~~la~~l~~~~~---p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~ 131 (238)
..++++.+||+. ..+.. ...++++.+ +.||++|+. + |+++||||||+ ||+.++..++ ++++++++.|.
T Consensus 825 ~~~~L~~~gL~~~~l~~~--~~~LSGGekQRv~LAraL~~--~p~~p~lLILDEPTsGLD~~~~~~l~-~lL~~L~~~G~ 899 (972)
T 2r6f_A 825 KLETLYDVGLGYMKLGQP--ATTLSGGEAQRVKLAAELHR--RSNGRTLYILDEPTTGLHVDDIARLL-DVLHRLVDNGD 899 (972)
T ss_dssp HHHHHHHTTCSSSBTTCC--GGGCCHHHHHHHHHHHHHSS--CCCSCEEEEEECTTTTCCHHHHHHHH-HHHHHHHHTTC
T ss_pred HHHHHHHcCCCcccccCc--hhhCCHHHHHHHHHHHHHhc--CCCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhCCC
Confidence 356788899976 22222 234666543 899999997 6 49999999999 9999999999 99999987899
Q ss_pred eEEEEEecccccccc
Q 026486 132 NVCAVYLLDSQFITD 146 (238)
Q Consensus 132 tvi~v~l~d~~~~~d 146 (238)
++|+| +|.+..
T Consensus 900 TVIvi----sHdl~~ 910 (972)
T 2r6f_A 900 TVLVI----EHNLDV 910 (972)
T ss_dssp EEEEE----CCCHHH
T ss_pred EEEEE----cCCHHH
Confidence 99888 476653
No 75
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.55 E-value=4.5e-16 Score=130.57 Aligned_cols=129 Identities=15% Similarity=0.108 Sum_probs=70.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHH--hCCcCCCceEEEeeecCCC------CCCCCC-CC------CChhhhhhHHHHH---H
Q 026486 3 YAQLVIGPAGSGKSTYCSSLY--RHCETVRRTMHIVNLDPAA------ENFDYP-VA------MDIRELISLEDVM---E 64 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~--g~l~~~~G~i~i~~~d~~~------~~~~~~-~~------~~i~~~i~~~~~l---~ 64 (238)
-+++|+||||||||||+++++ |..++.+|.+++.+.++.. ..+++. +. +++.+........ +
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVGLPSEE 110 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC------------
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEcccccccccccc
Confidence 368999999999999999999 6656677777777654321 123331 10 1111111100000 0
Q ss_pred Hc-CCCCCCchhhhHHhhhhhHHHHHHHHH-hccCCCCEEEEeCCCc-cc-----HHhHHHHHHHHHHHHHhCCCeEEEE
Q 026486 65 EL-GLGPNGGLIYCMEHLEDNLDDWLAEEL-DNYLDDDYLVFDCPGQ-IE-----LFTHVPVLRNFVDHLKSRNFNVCAV 136 (238)
Q Consensus 65 ~~-~l~~~~~~~~~~~~~~~~~s~~la~~l-~~~~~p~~lilDEPt~-LD-----~~~~~~~~~~ll~~l~~~~~tvi~v 136 (238)
.. .+.+.. . ......+...+ .. +|+++++|||++ +| ...+..+. ++++.+++.|.+++++
T Consensus 111 ~~~~~~~~~-----~----~~~~~~~~~~l~~~--~p~~lilDep~~~ld~~~d~~~~~~~l~-~l~~~l~~~g~tii~v 178 (251)
T 2ehv_A 111 KFVLEDRFN-----V----DNFLRYIYRVVKAI--NAKRLVIDSIPSIALRLEEERKIREVLL-KLNTILLEMGVTTILT 178 (251)
T ss_dssp -------CC-----H----HHHHHHHHHHHHHT--TCSEEEEECHHHHHHHSSSGGGHHHHHH-HHHHHHHHHCCEEEEE
T ss_pred ceeccCccc-----H----HHHHHHHHHHHHhh--CCCEEEEccHHHHHhhcCCHHHHHHHHH-HHHHHHHHCCCeEEEE
Confidence 00 000000 0 11112222222 24 999999999998 86 55555566 8999998779999887
Q ss_pred Eecccccccch
Q 026486 137 YLLDSQFITDV 147 (238)
Q Consensus 137 ~l~d~~~~~d~ 147 (238)
+ |...+.
T Consensus 179 t----H~~~~~ 185 (251)
T 2ehv_A 179 T----EAPDPQ 185 (251)
T ss_dssp E----CCC---
T ss_pred E----CCCCCC
Confidence 4 665544
No 76
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.53 E-value=1.3e-16 Score=131.79 Aligned_cols=59 Identities=5% Similarity=-0.046 Sum_probs=47.1
Q ss_pred HHhccCCCCEEEEeCCCc-c----cHHhHHHHHHHHHHHHHh-CCCeEEEEEecccccccchhHHHhhhHHH
Q 026486 92 ELDNYLDDDYLVFDCPGQ-I----ELFTHVPVLRNFVDHLKS-RNFNVCAVYLLDSQFITDVTKFISGCMAS 157 (238)
Q Consensus 92 ~l~~~~~p~~lilDEPt~-L----D~~~~~~~~~~ll~~l~~-~~~tvi~v~l~d~~~~~d~~~~~~~~l~~ 157 (238)
+++. +|+++++|||++ + |+..++.+. ++++++++ .|.+++++ +|.+.+...+++.++++
T Consensus 137 ~l~~--~p~~~~LDep~~~l~~~~d~~~~~~l~-~~l~~l~~~~g~tvi~v----tHdl~~~~~~~d~i~~l 201 (207)
T 1znw_A 137 VFLA--PPSWQDLQARLIGRGTETADVIQRRLD-TARIELAAQGDFDKVVV----NRRLESACAELVSLLVG 201 (207)
T ss_dssp EEEE--CSCHHHHHHHHHTTSCSCHHHHHHHHH-HHHHHHHGGGGSSEEEE----CSSHHHHHHHHHHHHC-
T ss_pred EEEE--CCCHHHHHHHHHhcCCCCHHHHHHHHH-HHHHHHhhhccCcEEEE----CCCHHHHHHHHHHHHHh
Confidence 4555 899999999987 7 777888888 88899874 58899877 59998888888877653
No 77
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.53 E-value=1.2e-15 Score=131.70 Aligned_cols=39 Identities=21% Similarity=0.348 Sum_probs=25.4
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecC
Q 026486 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (238)
Q Consensus 2 ~~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~ 40 (238)
.|.++|+||||||||||+++|+|+.+|++|+|.+.|.++
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i 40 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKI 40 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------C
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCccc
Confidence 478999999999999999999999999999999998765
No 78
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.50 E-value=1.2e-13 Score=121.48 Aligned_cols=55 Identities=9% Similarity=0.053 Sum_probs=43.5
Q ss_pred hhhhhHH--HHHHHHHhc--cCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 026486 80 HLEDNLD--DWLAEELDN--YLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (238)
Q Consensus 80 ~~~~~~s--~~la~~l~~--~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~tvi~v 136 (238)
.++++++ ++||++++. ..+|+++||||||+ ||+..+..+. ++++++. .+.+++++
T Consensus 219 ~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~-~~l~~~~-~~~~vi~~ 278 (322)
T 1e69_A 219 LLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFK-RLLKENS-KHTQFIVI 278 (322)
T ss_dssp GSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHH-HHHHHHT-TTSEEEEE
T ss_pred hCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHH-HHHHHhc-CCCeEEEE
Confidence 4555544 888998862 11889999999999 9999999999 8888884 47777776
No 79
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.49 E-value=9.1e-14 Score=137.37 Aligned_cols=78 Identities=19% Similarity=0.215 Sum_probs=60.1
Q ss_pred HHHHHHcCCCCC-CchhhhHHhhhhhHH--HHHHHHHhccCC---CCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCe
Q 026486 60 EDVMEELGLGPN-GGLIYCMEHLEDNLD--DWLAEELDNYLD---DDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFN 132 (238)
Q Consensus 60 ~~~l~~~~l~~~-~~~~~~~~~~~~~~s--~~la~~l~~~~~---p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~t 132 (238)
.++++.+||+.. .+.. ...++++.+ +.||++|+. + |+++||||||+ ||+.++..++ ++++++++.|.+
T Consensus 844 ~~~L~~lgL~~~~l~~~--~~~LSGGekQRv~LAraL~~--~p~~p~lLILDEPTsGLD~~~~~~l~-~lL~~L~~~G~T 918 (993)
T 2ygr_A 844 LRTLVDVGLGYVRLGQP--APTLSGGEAQRVKLASELQK--RSTGRTVYILDEPTTGLHFDDIRKLL-NVINGLVDKGNT 918 (993)
T ss_dssp HHHHHHTTGGGSBTTCC--GGGSCHHHHHHHHHHHHHSS--CCCSSEEEEEESTTTTCCHHHHHHHH-HHHHHHHHTTCE
T ss_pred HHHHHHcCCCcccccCc--cccCCHHHHHHHHHHHHHHh--CCCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhCCCE
Confidence 467788888752 2221 234666543 899999997 6 49999999999 9999999999 999999878999
Q ss_pred EEEEEecccccccc
Q 026486 133 VCAVYLLDSQFITD 146 (238)
Q Consensus 133 vi~v~l~d~~~~~d 146 (238)
+|+| +|.+..
T Consensus 919 VIvi----sHdl~~ 928 (993)
T 2ygr_A 919 VIVI----EHNLDV 928 (993)
T ss_dssp EEEE----CCCHHH
T ss_pred EEEE----cCCHHH
Confidence 9888 476653
No 80
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.47 E-value=1.3e-13 Score=123.26 Aligned_cols=118 Identities=18% Similarity=0.168 Sum_probs=72.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCC-CceEEEeeecCCCCCCCCCCCCChhhhhhHHHHHHHcCCCCCCchhhhHHhhh
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETV-RRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~-~G~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~~~ 82 (238)
.++|+||||||||||+++++|+++++ +|.|... .|+.... .......-. ....+.. .
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~-ed~~e~~--~~~~~~~v~---------q~~~~~~----------~ 182 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTI-EDPIEFV--HESKKCLVN---------QREVHRD----------T 182 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEE-ESSCCSC--CCCSSSEEE---------EEEBTTT----------B
T ss_pred EEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEc-cCcHHhh--hhcccccee---------eeeeccc----------c
Confidence 68999999999999999999999987 4555444 4443211 110000000 0001110 0
Q ss_pred hhHHHHHHHHHhccCCCCEEEEeCCCcccHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccchhHHHhhhHHH
Q 026486 83 DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMAS 157 (238)
Q Consensus 83 ~~~s~~la~~l~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~ 157 (238)
..+..+|+++|.. +|+++++|||+ |..+ + +.+.++...|.+++++ +|..+.. ..+++++..
T Consensus 183 ~~~~~~La~aL~~--~PdvillDEp~--d~e~----~-~~~~~~~~~G~~vl~t----~H~~~~~-~~~dRli~l 243 (356)
T 3jvv_A 183 LGFSEALRSALRE--DPDIILVGEMR--DLET----I-RLALTAAETGHLVFGT----LHTTSAA-KTIDRVVDV 243 (356)
T ss_dssp SCHHHHHHHHTTS--CCSEEEESCCC--SHHH----H-HHHHHHHHTTCEEEEE----ESCSSHH-HHHHHHHHT
T ss_pred CCHHHHHHHHhhh--CcCEEecCCCC--CHHH----H-HHHHHHHhcCCEEEEE----EccChHH-HHHHHHhhh
Confidence 1233688999999 99999999999 5444 3 3334445678887666 3555433 667776654
No 81
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.45 E-value=9.9e-13 Score=115.15 Aligned_cols=125 Identities=14% Similarity=0.106 Sum_probs=77.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-------------CCCCC-CCCC------ChhhhhhHHHH
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------------ENFDY-PVAM------DIRELISLEDV 62 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------------~~~~~-~~~~------~i~~~i~~~~~ 62 (238)
.+++|+|||||||||+++.|+|+++|++|+|.+.|.|+.. ..++| ++.. ++++++.....
T Consensus 103 ~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~~~ 182 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAMKA 182 (304)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHh
Confidence 4789999999999999999999999999999999988632 12444 3322 23343332111
Q ss_pred -------HHHcCCCCCCchhhhHHhhhhhHHHHHHHHHhccCCCCEEEEeCCCcccHHhHHHHHHHHHHHHHh-CCCeEE
Q 026486 63 -------MEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKS-RNFNVC 134 (238)
Q Consensus 63 -------l~~~~l~~~~~~~~~~~~~~~~~s~~la~~l~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~-~~~tvi 134 (238)
++..|..+.. ...++.++ .++.++||++.. +|+.+++ .||+.+...++ +.++.+.+ .+.+++
T Consensus 183 ~~~d~~llDt~G~~~~~--~~~~~eLs-~~r~~iaRal~~--~P~~~lL----vLDa~t~~~~~-~~~~~~~~~~~~t~i 252 (304)
T 1rj9_A 183 RGYDLLFVDTAGRLHTK--HNLMEELK-KVKRAIAKADPE--EPKEVWL----VLDAVTGQNGL-EQAKKFHEAVGLTGV 252 (304)
T ss_dssp HTCSEEEECCCCCCTTC--HHHHHHHH-HHHHHHHHHCTT--CCSEEEE----EEETTBCTHHH-HHHHHHHHHHCCSEE
T ss_pred CCCCEEEecCCCCCCch--HHHHHHHH-HHHHHHHHhhcC--CCCeEEE----EEcHHHHHHHH-HHHHHHHHHcCCcEE
Confidence 0011111111 11122332 344889999999 9994443 45555555555 55666654 478888
Q ss_pred EEE
Q 026486 135 AVY 137 (238)
Q Consensus 135 ~v~ 137 (238)
+++
T Consensus 253 ivT 255 (304)
T 1rj9_A 253 IVT 255 (304)
T ss_dssp EEE
T ss_pred EEE
Confidence 875
No 82
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.44 E-value=7.6e-14 Score=115.47 Aligned_cols=37 Identities=22% Similarity=0.205 Sum_probs=29.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcC-------CCceEEEeeec
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCET-------VRRTMHIVNLD 39 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~-------~~G~i~i~~~d 39 (238)
-+++|+||||||||||++.++|...+ .+|.+++.+.+
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~ 69 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 69 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence 47899999999999999999996655 34466666543
No 83
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.43 E-value=6.3e-14 Score=125.66 Aligned_cols=59 Identities=8% Similarity=-0.020 Sum_probs=49.2
Q ss_pred hhhhhHH--HHHHHHHh------ccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEEeccccccc
Q 026486 80 HLEDNLD--DWLAEELD------NYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFIT 145 (238)
Q Consensus 80 ~~~~~~s--~~la~~l~------~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~tvi~v~l~d~~~~~ 145 (238)
.++++.+ ++||++++ . +|+++|+||||+ ||+.++..++ ++++++++.|.++++|+ |.+.
T Consensus 279 ~LSgGe~qr~~la~al~~~~~~~~--~p~~lllDEpt~~LD~~~~~~~~-~~l~~l~~~g~tvi~it----H~~~ 346 (365)
T 3qf7_A 279 GLSGGERALISISLAMSLAEVASG--RLDAFFIDEGFSSLDTENKEKIA-SVLKELERLNKVIVFIT----HDRE 346 (365)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHTTT--TCCEEEEESCCTTSCHHHHHHHH-HHHHGGGGSSSEEEEEE----SCHH
T ss_pred hCCHHHHHHHHHHHHHHhhhcccC--CCCEEEEeCCCccCCHHHHHHHH-HHHHHHHhCCCEEEEEe----cchH
Confidence 4555543 78888888 6 999999999999 9999999999 99999987789998884 6654
No 84
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.40 E-value=5.8e-13 Score=109.94 Aligned_cols=118 Identities=10% Similarity=0.123 Sum_probs=71.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCCCCCCCCCCCChhhhhhHHHHHHHcCCCCCCc---------
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGG--------- 73 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~--------- 73 (238)
-+++|+||||||||||++.+++...+.+|++.+.+.+...+. +.+.+..++......
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~ 89 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDS--------------IIRQAKQFNWDFEEYIEKKLIIID 89 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHH--------------HHHHHHHTTCCCGGGBTTTEEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHH--------------HHHHHHHhcchHHHHhhCCEEEEe
Confidence 368999999999999999999988888899988875532110 001111111111000
Q ss_pred -------hhhhHHh-hhhhHHHHH-HHHHhccCCCC--EEEEeCCCc-c--cHHhHHHHHHHHHHHHH-hCCCeEEEEE
Q 026486 74 -------LIYCMEH-LEDNLDDWL-AEELDNYLDDD--YLVFDCPGQ-I--ELFTHVPVLRNFVDHLK-SRNFNVCAVY 137 (238)
Q Consensus 74 -------~~~~~~~-~~~~~s~~l-a~~l~~~~~p~--~lilDEPt~-L--D~~~~~~~~~~ll~~l~-~~~~tvi~v~ 137 (238)
..+..+. -...+...+ +..... +|+ ++++|||++ + |+...+.++ +.++++. +.|.++++++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~llilDe~~~~~~~d~~~~~~~~-~~l~~~~~~~~~~vi~~~ 165 (235)
T 2w0m_A 90 ALMKEKEDQWSLVNLTPEELVNKVIEAKQKL--GYGKARLVIDSVSALFLDKPAMARKIS-YYLKRVLNKWNFTIYATS 165 (235)
T ss_dssp CCC----CTTBCSSCCHHHHHHHHHHHHHHH--CSSCEEEEEETGGGGSSSCGGGHHHHH-HHHHHHHHHTTEEEEEEE
T ss_pred ccccccCceeeecCCCHHHHHHHHHHHHHhh--CCCceEEEEECchHhhcCCHHHHHHHH-HHHHHHHHhCCCeEEEEe
Confidence 0000000 001111122 222234 899 999999997 6 998888888 7777775 4688887773
No 85
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.40 E-value=7.5e-13 Score=104.14 Aligned_cols=82 Identities=12% Similarity=0.115 Sum_probs=60.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCc--eEEEeeecCCCCCCCCCCCCChhhhhhHHHHHHHcCCCCCCchhhhHHhh
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRR--TMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G--~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~~ 81 (238)
.++|+||||||||||++++++.+.+ .| .+++.+.+....
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~~~-------------------------------------- 78 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMPLT-------------------------------------- 78 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSCCC--------------------------------------
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhhHH--------------------------------------
Confidence 5789999999999999999999877 46 555554332110
Q ss_pred hhhHHHHHHHHHhccCCCCEEEEeCCCcccHHhHHHHHHHHHHHHHhCCCe-EEEEE
Q 026486 82 EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFN-VCAVY 137 (238)
Q Consensus 82 ~~~~s~~la~~l~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~t-vi~v~ 137 (238)
++.. +|+++++|||+.++...+..++ ++++.+.++|.+ +++++
T Consensus 79 ----------~~~~--~~~lLilDE~~~~~~~~~~~l~-~li~~~~~~g~~~iiits 122 (149)
T 2kjq_A 79 ----------DAAF--EAEYLAVDQVEKLGNEEQALLF-SIFNRFRNSGKGFLLLGS 122 (149)
T ss_dssp ----------GGGG--GCSEEEEESTTCCCSHHHHHHH-HHHHHHHHHTCCEEEEEE
T ss_pred ----------HHHh--CCCEEEEeCccccChHHHHHHH-HHHHHHHHcCCcEEEEEC
Confidence 1234 8999999999997766677777 888888776777 65553
No 86
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.38 E-value=5e-13 Score=132.32 Aligned_cols=121 Identities=13% Similarity=0.175 Sum_probs=73.5
Q ss_pred eeEEEEcCCCCcHHHHHHHH--------HhCCcCCCceEEEeeecCCCCCCCCCCCCChhhhhhHHHHHHHcCCCCCCch
Q 026486 3 YAQLVIGPAGSGKSTYCSSL--------YRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGL 74 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l--------~g~l~~~~G~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~ 74 (238)
-+++|+||||||||||+|.+ .|...|..+... + .. ++++..+|+..+.
T Consensus 663 ~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~~--~---------~~-----------d~i~~~ig~~d~l-- 718 (934)
T 3thx_A 663 MFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEV--S---------IV-----------DCILARVGAGDSQ-- 718 (934)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEEE--E---------CC-----------SEEEEECC-------
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccccccc--h---------HH-----------HHHHHhcCchhhH--
Confidence 36899999999999999999 665544432210 0 00 0011112222111
Q ss_pred hhhHHhhhhhHHHHHHHHH--hccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CCCeEEEEEecccccccchhHH
Q 026486 75 IYCMEHLEDNLDDWLAEEL--DNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNVCAVYLLDSQFITDVTKF 150 (238)
Q Consensus 75 ~~~~~~~~~~~s~~la~~l--~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~~tvi~v~l~d~~~~~d~~~~ 150 (238)
......++.++ ..+++++ +. +|+++|+||||+ +|+.....+...+++.+.+ .|.++++++ |+. +...+
T Consensus 719 ~~~lStf~~e~-~~~a~il~~a~--~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aT----H~~-el~~l 790 (934)
T 3thx_A 719 LKGVSTFMAEM-LETASILRSAT--KDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFAT----HFH-ELTAL 790 (934)
T ss_dssp ----CHHHHHH-HHHHHHHHHCC--TTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEE----SCG-GGGGG
T ss_pred HHhHhhhHHHH-HHHHHHHHhcc--CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEc----CcH-HHHHH
Confidence 00112333444 6666666 56 999999999999 9999998885588899876 488887773 552 33344
Q ss_pred HhhhH
Q 026486 151 ISGCM 155 (238)
Q Consensus 151 ~~~~l 155 (238)
++.+.
T Consensus 791 ad~~~ 795 (934)
T 3thx_A 791 ANQIP 795 (934)
T ss_dssp GGTCT
T ss_pred hcccc
Confidence 44443
No 87
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.37 E-value=2.2e-13 Score=127.41 Aligned_cols=122 Identities=16% Similarity=0.074 Sum_probs=78.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCce-EEEeeecCCCCCCCC--CCCCChhhhhhHHHHHHHcCCCCCCchhhhHH
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRT-MHIVNLDPAAENFDY--PVAMDIRELISLEDVMEELGLGPNGGLIYCME 79 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~-i~i~~~d~~~~~~~~--~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~ 79 (238)
-+++|+||||||||||++.++|...+.+++ +++.+.++..+-... ....+ ++++. ..|+...... .. .
T Consensus 282 ~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~------~~~~~-~~g~~~~~~~-~p-~ 352 (525)
T 1tf7_A 282 SIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMD------FEEME-RQNLLKIVCA-YP-E 352 (525)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCC------HHHHH-HTTSEEECCC-CG-G
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCC------HHHHH-hCCCEEEEEe-cc-c
Confidence 368999999999999999999999886443 455554431100000 00011 22222 2222111000 01 1
Q ss_pred hhhhh--HHHHHHHHHhccCCCCEEEEeCCCc-ccHH-----hHHHHHHHHHHHHHhCCCeEEEEE
Q 026486 80 HLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELF-----THVPVLRNFVDHLKSRNFNVCAVY 137 (238)
Q Consensus 80 ~~~~~--~s~~la~~l~~~~~p~~lilDEPt~-LD~~-----~~~~~~~~ll~~l~~~~~tvi~v~ 137 (238)
.++.+ +++.+|+++.. +|+++|+| |++ +|.. .+..+. ++++.+++.|.+++++.
T Consensus 353 ~LS~g~~q~~~~a~~l~~--~p~llilD-p~~~Ld~~~~~~~~~~~i~-~ll~~l~~~g~tvilvs 414 (525)
T 1tf7_A 353 SAGLEDHLQIIKSEINDF--KPARIAID-SLSALARGVSNNAFRQFVI-GVTGYAKQEEITGLFTN 414 (525)
T ss_dssp GSCHHHHHHHHHHHHHTT--CCSEEEEE-CHHHHTSSSCHHHHHHHHH-HHHHHHHHTTCEEEEEE
T ss_pred cCCHHHHHHHHHHHHHhh--CCCEEEEc-ChHHHHhhCChHHHHHHHH-HHHHHHHhCCCEEEEEE
Confidence 22332 33788888888 99999999 999 9999 888888 89999988899988774
No 88
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.37 E-value=9.4e-14 Score=129.94 Aligned_cols=145 Identities=12% Similarity=0.109 Sum_probs=87.7
Q ss_pred eeEEEEcCCCCcHHHHHHH--HHhCCcCCCceEEEeeecCCC------CCCCC-CCCCChhhhhhHHHHHHHcCCCCCCc
Q 026486 3 YAQLVIGPAGSGKSTYCSS--LYRHCETVRRTMHIVNLDPAA------ENFDY-PVAMDIRELISLEDVMEELGLGPNGG 73 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~--l~g~l~~~~G~i~i~~~d~~~------~~~~~-~~~~~i~~~i~~~~~l~~~~l~~~~~ 73 (238)
-+++|+||||||||||+++ ++|+++|.+|.|++.|.+... ..++| +|+....+++. .+...+...
T Consensus 40 e~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~l~------~~~~~~~~~ 113 (525)
T 1tf7_A 40 RSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKLF------ILDASPDPE 113 (525)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTSEE------EEECCCCSS
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccCcEE------EEecCcccc
Confidence 3689999999999999999 789999999999999876421 22333 11100000000 001100000
Q ss_pred hhhhHHhh-hhhHHHHHHHHHhccCCCCEEEEeCCCc------ccHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccc
Q 026486 74 LIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ------IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITD 146 (238)
Q Consensus 74 ~~~~~~~~-~~~~s~~la~~l~~~~~p~~lilDEPt~------LD~~~~~~~~~~ll~~l~~~~~tvi~v~l~d~~~~~d 146 (238)
....++.+ ...+...+..++... +|+.+++|||++ +|+..++.++ ++++.+++.|.|++++. |...+
T Consensus 114 ~~~~l~~~~l~~~~~~~~~~LS~g-~~~~lilDe~t~~~~~~~lD~~~~~~l~-~ll~~l~~~g~tvl~it----H~~~~ 187 (525)
T 1tf7_A 114 GQEVVGGFDLSALIERINYAIQKY-RARRVSIDSVTSVFQQYDASSVVRRELF-RLVARLKQIGATTVMTT----ERIEE 187 (525)
T ss_dssp CCSCCSSHHHHHHHHHHHHHHHHH-TCSEEEEECSTTTSTTTCCHHHHHHHHH-HHHHHHHHHTCEEEEEE----ECSSS
T ss_pred hhhhhcccCHHHHHHHHHHHHHHc-CCCEEEECCHHHHHHhcCCHHHHHHHHH-HHHHHHHHCCCEEEEEe----cCCCC
Confidence 00000000 011114455566422 899999999986 3788888888 99999987789988873 66655
Q ss_pred h---------hHHHhhhHHHHH
Q 026486 147 V---------TKFISGCMASLS 159 (238)
Q Consensus 147 ~---------~~~~~~~l~~~~ 159 (238)
. ..+++++++...
T Consensus 188 ~~~~~~~~i~~~laD~vi~L~~ 209 (525)
T 1tf7_A 188 YGPIARYGVEEFVSDNVVILRN 209 (525)
T ss_dssp SSCSSTTSCHHHHCSEEEEEEE
T ss_pred ccccccccceeeeeeEEEEEEE
Confidence 3 233666655433
No 89
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.35 E-value=4.6e-13 Score=133.81 Aligned_cols=127 Identities=16% Similarity=0.143 Sum_probs=77.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCC--CceEEEeeecCCCCCCCCCCCCChhhhhhHHHHHHHcCCCCCCchhhhHHh
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETV--RRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH 80 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~--~G~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~ 80 (238)
-+++|+||||||||||+|.+ |++.+. -|.. -|+. ...+++.+.+ +..+|+..+.. .....
T Consensus 790 ~i~~ItGpNgsGKSTlLr~i-Gl~~~~aqiG~~-----Vpq~-----~~~l~v~d~I-----~~rig~~d~~~--~~~st 851 (1022)
T 2o8b_B 790 YCVLVTGPNMGGKSTLMRQA-GLLAVMAQMGCY-----VPAE-----VCRLTPIDRV-----FTRLGASDRIM--SGEST 851 (1022)
T ss_dssp CEEEEECCTTSSHHHHHHHH-HHHHHHHTTTCC-----EESS-----EEEECCCSBE-----EEECC-----------CH
T ss_pred cEEEEECCCCCChHHHHHHH-HHHHHHhheeEE-----eccC-----cCCCCHHHHH-----HHHcCCHHHHh--hchhh
Confidence 47899999999999999999 987642 1200 0110 0012233222 11223322210 01123
Q ss_pred hhhhHH-HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC-CCeEEEEEecccccccchhHHHhh
Q 026486 81 LEDNLD-DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFNVCAVYLLDSQFITDVTKFISG 153 (238)
Q Consensus 81 ~~~~~s-~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~~tvi~v~l~d~~~~~d~~~~~~~ 153 (238)
++.+++ ++++++++. +|+++|+||||+ +|+.....+...+++.+.+. |.+++++ +|+......+++.
T Consensus 852 f~~em~~~a~al~la~--~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~----TH~~el~~~~~d~ 921 (1022)
T 2o8b_B 852 FFVELSETASILMHAT--AHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFS----THYHSLVEDYSQN 921 (1022)
T ss_dssp HHHHHHHHHHHHHHCC--TTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEE----CCCHHHHHHTSSC
T ss_pred hHHHHHHHHHHHHhCC--CCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEE----eCCHHHHHHhCCc
Confidence 444554 777888888 999999999998 99998655433899999865 8888777 5777655554443
No 90
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.34 E-value=9e-13 Score=114.10 Aligned_cols=127 Identities=11% Similarity=0.087 Sum_probs=70.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCc-eEEEeeecCCCCC----C-CCCCCC--Chhhhhh------------HHHH
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRR-TMHIVNLDPAAEN----F-DYPVAM--DIRELIS------------LEDV 62 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G-~i~i~~~d~~~~~----~-~~~~~~--~i~~~i~------------~~~~ 62 (238)
-+++|+||||||||||++.++|.+.+.+| +|.+.+.+..... + .+.+.. ...+.+. ++++
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 115 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRVRLRQSDSLKREIIENGKFDQWFDEL 115 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSCHHHHHHHHHHHHTTCCGGGCHHHHHHHHHHTHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCCHHHHHHHHHHHHcCCChhhccccccCCCCHHHHHHHHHHH
Confidence 36899999999999999999999998877 7877665432110 0 001111 1111111 1222
Q ss_pred HHHcCC--CCCCchhhhHHhhhhhHH-HHHHHHHhccCCCCEEEEeCCCc-cc------H-HhHHHHHHHHHHHHHh-CC
Q 026486 63 MEELGL--GPNGGLIYCMEHLEDNLD-DWLAEELDNYLDDDYLVFDCPGQ-IE------L-FTHVPVLRNFVDHLKS-RN 130 (238)
Q Consensus 63 l~~~~l--~~~~~~~~~~~~~~~~~s-~~la~~l~~~~~p~~lilDEPt~-LD------~-~~~~~~~~~ll~~l~~-~~ 130 (238)
++..++ ..... +.....+. ...++++.. +|+++|+|||+. ++ . .....++ +.++++++ .|
T Consensus 116 l~~~~l~i~~~~~-----~~~~~~l~~~~~a~~~~~--~p~llilDept~~~~~~~~~d~~~~~~~i~-~~L~~la~~~~ 187 (296)
T 1cr0_A 116 FGNDTFHLYDSFA-----EAETDRLLAKLAYMRSGL--GCDVIILDHISIVVSASGESDERKMIDNLM-TKLKGFAKSTG 187 (296)
T ss_dssp HSSSCEEEECCCC-----SCCHHHHHHHHHHHHHTT--CCSEEEEEEEC-----------CHHHHHHH-HHHHHHHHHHC
T ss_pred hccCCEEEECCCC-----CCCHHHHHHHHHHHHHhc--CCCEEEEcCccccCCCCCCCCHHHHHHHHH-HHHHHHHHHhC
Confidence 222122 11100 01112221 122555667 999999999998 43 3 4445666 77777765 48
Q ss_pred CeEEEEE
Q 026486 131 FNVCAVY 137 (238)
Q Consensus 131 ~tvi~v~ 137 (238)
.++++++
T Consensus 188 ~~vi~vs 194 (296)
T 1cr0_A 188 VVLVVIC 194 (296)
T ss_dssp CEEEEEE
T ss_pred CeEEEEE
Confidence 8888774
No 91
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.33 E-value=3.2e-12 Score=114.88 Aligned_cols=118 Identities=19% Similarity=0.171 Sum_probs=75.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCC-CceEEEeeecCCCCCCCCCCCCC-hhhhhhHHHHHHHcCCCCCCchhhhHHh
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETV-RRTMHIVNLDPAAENFDYPVAMD-IRELISLEDVMEELGLGPNGGLIYCMEH 80 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~-~G~i~i~~~d~~~~~~~~~~~~~-i~~~i~~~~~l~~~~l~~~~~~~~~~~~ 80 (238)
-.++|+|||||||||++++|+|+++++ +|+|.+.+.++. ..+..... +.+. .+|+.+.
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e---~~~~~~~~~v~Q~--------~~g~~~~--------- 196 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE---YVFKHKKSIVNQR--------EVGEDTK--------- 196 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC---SCCCCSSSEEEEE--------EBTTTBS---------
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh---hhhccCceEEEee--------ecCCCHH---------
Confidence 368999999999999999999999997 899988775432 11111111 1100 1233221
Q ss_pred hhhhHHHHHHHHHhccCCCCEEEEeCCCcccHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccchhHHHhhhHHH
Q 026486 81 LEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMAS 157 (238)
Q Consensus 81 ~~~~~s~~la~~l~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~ 157 (238)
.++..+++++.. +|+++++|||+ |..+.. ..++.. ..|.+++.+ +|. .++..++++++..
T Consensus 197 ---~~~~~l~~~L~~--~pd~illdE~~--d~e~~~----~~l~~~-~~g~~vi~t----~H~-~~~~~~~~rl~~l 256 (372)
T 2ewv_A 197 ---SFADALRAALRE--DPDVIFVGEMR--DLETVE----TALRAA-ETGHLVFGT----LHT-NTAIDTIHRIVDI 256 (372)
T ss_dssp ---CSHHHHHHHTTS--CCSEEEESCCC--SHHHHH----HHHHHH-TTTCEEEEC----CCC-CSHHHHHHHHHHT
T ss_pred ---HHHHHHHHHhhh--CcCEEEECCCC--CHHHHH----HHHHHH-hcCCEEEEE----ECc-chHHHHHHHHHHh
Confidence 134788999998 99999999999 554432 334443 457766433 344 4567777766543
No 92
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.32 E-value=9e-14 Score=122.22 Aligned_cols=105 Identities=13% Similarity=-0.004 Sum_probs=66.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCc--eEEEeeecCCC------CCCCCCCCCCh---hhhhhHHHHHHHcCCCCC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRR--TMHIVNLDPAA------ENFDYPVAMDI---RELISLEDVMEELGLGPN 71 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G--~i~i~~~d~~~------~~~~~~~~~~i---~~~i~~~~~l~~~~l~~~ 71 (238)
.+++|+||||||||||+++|+|+++|..| .+.+...|..- +++.+...... .+.-.+.+.++.++ ...
T Consensus 91 ~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l~-~~~ 169 (312)
T 3aez_A 91 FIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYNRRALMRFVTSVK-SGS 169 (312)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHHHHHHHHHHH-TTC
T ss_pred EEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCccCCcccHHHHHHHHHhcCCChHHHHHHHHHHHHHhC-CCc
Confidence 68999999999999999999999999876 46665555321 11111100000 01112566777776 222
Q ss_pred CchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccH
Q 026486 72 GGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IEL 112 (238)
Q Consensus 72 ~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~ 112 (238)
.... ...+++++. +.+|++++. +|+++|+|||+. .|.
T Consensus 170 ~~~~--~~~lS~G~~qRv~~a~al~~--~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 170 DYAC--APVYSHLHYDIIPGAEQVVR--HPDILILEGLNVLQTG 209 (312)
T ss_dssp SCEE--EEEEETTTTEEEEEEEEEEC--SCSEEEEECTTTTCCC
T ss_pred ccCC--cccCChhhhhhhhhHHHhcc--CCCEEEECCccccCCc
Confidence 1111 123444443 567788888 999999999998 764
No 93
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.31 E-value=3.9e-12 Score=102.08 Aligned_cols=99 Identities=13% Similarity=0.148 Sum_probs=63.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCce-EEEeeecCCCCCCCCCCCCChhhhhhHHHHHHHcCCCCCCchhhhHHhh
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRT-MHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~-i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~~ 81 (238)
-+++|+||||||||||++++++.+.+..|. +.+. +..+.+. .+...+.-+..
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~---------------~~~~~~~--~~~~~~~~~~~---------- 91 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFF---------------DTKDLIF--RLKHLMDEGKD---------- 91 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEE---------------EHHHHHH--HHHHHHHHTCC----------
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEE---------------EHHHHHH--HHHHHhcCchH----------
Confidence 468999999999999999999998766552 2221 1222111 11111100000
Q ss_pred hhhHHHHHHHHHhccCCCCEEEEeCCC-c-ccHHhHHHHHHHHHHHHHhCCCeEEEEE
Q 026486 82 EDNLDDWLAEELDNYLDDDYLVFDCPG-Q-IELFTHVPVLRNFVDHLKSRNFNVCAVY 137 (238)
Q Consensus 82 ~~~~s~~la~~l~~~~~p~~lilDEPt-~-LD~~~~~~~~~~ll~~l~~~~~tvi~v~ 137 (238)
. ..+ .... +|++|++|||+ . +|+..+..+. ++++...++|.++|+++
T Consensus 92 -~---~~~--~~~~--~~~llilDE~~~~~~~~~~~~~l~-~ll~~~~~~~~~ii~ts 140 (180)
T 3ec2_A 92 -T---KFL--KTVL--NSPVLVLDDLGSERLSDWQRELIS-YIITYRYNNLKSTIITT 140 (180)
T ss_dssp -S---HHH--HHHH--TCSEEEEETCSSSCCCHHHHHHHH-HHHHHHHHTTCEEEEEC
T ss_pred -H---HHH--HHhc--CCCEEEEeCCCCCcCCHHHHHHHH-HHHHHHHHcCCCEEEEc
Confidence 0 111 1223 89999999998 3 9999888877 88888876788887663
No 94
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.31 E-value=5.9e-14 Score=114.88 Aligned_cols=35 Identities=17% Similarity=0.257 Sum_probs=31.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecC
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~ 40 (238)
+++|+||||||||||++.|+|+++ ++| |.++|.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~ 37 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYT 37 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEEC
T ss_pred EEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEec
Confidence 579999999999999999999999 889 98888665
No 95
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.29 E-value=6e-12 Score=111.47 Aligned_cols=48 Identities=13% Similarity=0.116 Sum_probs=41.2
Q ss_pred HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEE
Q 026486 87 DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVY 137 (238)
Q Consensus 87 ~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~tvi~v~ 137 (238)
+++|++++. +|+++|+||||+ ||+..+..++ ++++++.+.+.++++++
T Consensus 263 l~~a~~l~~--~p~~lllDEp~~~LD~~~~~~l~-~~l~~~~~~~~~vi~~s 311 (339)
T 3qkt_A 263 LAMSLYLAG--EISLLILDEPTPYLDEERRRKLI-TIMERYLKKIPQVILVS 311 (339)
T ss_dssp HHHHHHTTT--TTCEEEEECCCTTCCHHHHHHHH-HHHHHTGGGSSEEEEEE
T ss_pred HHHHHHhcC--CCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhcCCEEEEEE
Confidence 467777877 999999999999 9999999999 88988876677887773
No 96
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.28 E-value=2.6e-12 Score=126.87 Aligned_cols=113 Identities=14% Similarity=0.158 Sum_probs=63.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcC-CCceEEEeeecCCCC-CCCCCCCCChhhhhhHHHHHHHcCCCCCCchhhhHHh
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCET-VRRTMHIVNLDPAAE-NFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH 80 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~-~~G~i~i~~~d~~~~-~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~ 80 (238)
-+++|+||||||||||+|.++++... ..|. .-|+.. .++... .+...+.+.+.+.. + ...
T Consensus 674 ~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~-----~vpa~~~~i~~~d--~i~~~ig~~d~l~~-~----------~st 735 (918)
T 3thx_B 674 RVMIITGPNMGGKSSYIKQVALITIMAQIGS-----YVPAEEATIGIVD--GIFTRMGAADNIYK-G----------RST 735 (918)
T ss_dssp CEEEEESCCCHHHHHHHHHHHHHHHHHHHTC-----CBSSSEEEEECCS--EEEEEC---------------------CC
T ss_pred eEEEEECCCCCchHHHHHHHHHHHHHhhcCc-----cccchhhhhhHHH--HHHHhCChHHHHHH-h----------HHH
Confidence 36899999999999999999864211 1110 001100 001000 01111111111110 0 112
Q ss_pred hhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CCCeEEEE
Q 026486 81 LEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNVCAV 136 (238)
Q Consensus 81 ~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~~tvi~v 136 (238)
++.++. ..++++ +. +|+++|+||||+ +|+.....+...+++.+.+ .|.+++++
T Consensus 736 fs~em~~~~~il~~-a~--~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~v 792 (918)
T 3thx_B 736 FMEELTDTAEIIRK-AT--SQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFV 792 (918)
T ss_dssp HHHHHHHHHHHHHH-CC--TTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred hhHHHHHHHHHHHh-cc--CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEE
Confidence 333442 334433 55 999999999999 9999999887688888865 58888777
No 97
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.27 E-value=1.4e-11 Score=108.84 Aligned_cols=127 Identities=15% Similarity=0.140 Sum_probs=75.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-----------CCCC--C-CCC------CChhhhhhHHHH
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFD--Y-PVA------MDIRELISLEDV 62 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-----------~~~~--~-~~~------~~i~~~i~~~~~ 62 (238)
.+++++|||||||||+++.|+|+++|++|+|.+.|.|+.. +..+ + ++. .++++++.....
T Consensus 130 ~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~~~ 209 (328)
T 3e70_C 130 YVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHAKA 209 (328)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHHHh
Confidence 6899999999999999999999999999999999998742 1122 2 222 123343321110
Q ss_pred HHHcC---CCCCCchhhhHHhhhhhHHHHHHHHHhccCCCCEEEEeCCCcccHHhHHHHHHHHHHHHHh-CCCeEEEEEe
Q 026486 63 MEELG---LGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKS-RNFNVCAVYL 138 (238)
Q Consensus 63 l~~~~---l~~~~~~~~~~~~~~~~~s~~la~~l~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~-~~~tvi~v~l 138 (238)
.... ++..|.... ...+...+ ..+++++.. ++.++++|.+++. +++ +.++.+++ .+.+.++++=
T Consensus 210 -~~~d~vliDtaG~~~~-~~~l~~eL-~~i~ral~~--de~llvLDa~t~~------~~~-~~~~~~~~~~~it~iilTK 277 (328)
T 3e70_C 210 -RGIDVVLIDTAGRSET-NRNLMDEM-KKIARVTKP--NLVIFVGDALAGN------AIV-EQARQFNEAVKIDGIILTK 277 (328)
T ss_dssp -HTCSEEEEEECCSCCT-TTCHHHHH-HHHHHHHCC--SEEEEEEEGGGTT------HHH-HHHHHHHHHSCCCEEEEEC
T ss_pred -ccchhhHHhhccchhH-HHHHHHHH-HHHHHHhcC--CCCEEEEecHHHH------HHH-HHHHHHHHhcCCCEEEEeC
Confidence 1111 010110000 01233344 457788877 7778888866653 444 45556653 5888888764
Q ss_pred ccc
Q 026486 139 LDS 141 (238)
Q Consensus 139 ~d~ 141 (238)
.|.
T Consensus 278 lD~ 280 (328)
T 3e70_C 278 LDA 280 (328)
T ss_dssp GGG
T ss_pred cCC
Confidence 443
No 98
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.27 E-value=1.1e-11 Score=110.32 Aligned_cols=128 Identities=16% Similarity=0.107 Sum_probs=69.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCC--cCCC----ce-EEEeeecCCCCCCCCCCCCChhhhhhHHHHHHHcCCCCCC---
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHC--ETVR----RT-MHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNG--- 72 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l--~~~~----G~-i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~--- 72 (238)
-+++|+||||||||||++.+++.. +|+. |+ +++++.+... ++ .+..+.+.+++.+..
T Consensus 132 ~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~-----------~~--~i~~i~q~~~~~~~~v~~ 198 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR-----------PE--RIREIAQNRGLDPDEVLK 198 (349)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCC-----------HH--HHHHHHHTTTCCHHHHGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCC-----------HH--HHHHHHHHcCCCHHHHhh
Confidence 478999999999999999999998 5555 67 7777754310 01 011122222221100
Q ss_pred chhhhHHhhhhhH--HHHHHHHHhcc-----CCCCEEEEeCCCc-ccHHh------------HHHHHHHHHHHHHh-CCC
Q 026486 73 GLIYCMEHLEDNL--DDWLAEELDNY-----LDDDYLVFDCPGQ-IELFT------------HVPVLRNFVDHLKS-RNF 131 (238)
Q Consensus 73 ~~~~~~~~~~~~~--s~~la~~l~~~-----~~p~~lilDEPt~-LD~~~------------~~~~~~~ll~~l~~-~~~ 131 (238)
...+.......++ .+.+++++..- .+|+++|+|||++ +|+.. .++++ ..++++.+ .+.
T Consensus 199 ni~~~~~~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l-~~L~~la~~~~~ 277 (349)
T 1pzn_A 199 HIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHL-ADLHRLANLYDI 277 (349)
T ss_dssp GEEEEECCSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHH-HHHHHHHHHTTC
T ss_pred CEEEEecCChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHH-HHHHHHHHHcCc
Confidence 0000000000111 14445555521 2899999999999 98852 23444 44455543 588
Q ss_pred eEEEEEecccccccchh
Q 026486 132 NVCAVYLLDSQFITDVT 148 (238)
Q Consensus 132 tvi~v~l~d~~~~~d~~ 148 (238)
++++++ |...++.
T Consensus 278 tvii~~----h~~~~~~ 290 (349)
T 1pzn_A 278 AVFVTN----QVQARPD 290 (349)
T ss_dssp EEEEEE----ECC----
T ss_pred EEEEEc----ccccccc
Confidence 887774 5444443
No 99
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.27 E-value=3.1e-12 Score=124.46 Aligned_cols=108 Identities=14% Similarity=0.173 Sum_probs=66.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCc-CCCceEEEeeecCCC-CCCCCC----CCCChhhhhhHHHHHHHcCCCCCCchhhh
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCE-TVRRTMHIVNLDPAA-ENFDYP----VAMDIRELISLEDVMEELGLGPNGGLIYC 77 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~-~~~G~i~i~~~d~~~-~~~~~~----~~~~i~~~i~~~~~l~~~~l~~~~~~~~~ 77 (238)
+++|+||||||||||+|+++|+.. ++.|.+. |+. ..+++. ..+++.+++.. ++ .
T Consensus 578 i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v-----pa~~~~i~~v~~i~~~~~~~d~l~~-------g~--S------ 637 (765)
T 1ewq_A 578 LVLITGPNMAGKSTFLRQTALIALLAQVGSFV-----PAEEAHLPLFDGIYTRIGASDDLAG-------GK--S------ 637 (765)
T ss_dssp EEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB-----SSSEEEECCCSEEEEECCC-------------CC--S------
T ss_pred EEEEECCCCCChHHHHHHHHhhhhhcccCcee-----ehhccceeeHHHhhccCCHHHHHHh-------cc--c------
Confidence 689999999999999999999874 6777642 221 123331 12233332210 11 1
Q ss_pred HHhhhhhHHHHHHHHH--hccCCCCEEEEeCC---Cc-ccHHhHH-HHHHHHHHHHHhCCCeEEEEEecccccc
Q 026486 78 MEHLEDNLDDWLAEEL--DNYLDDDYLVFDCP---GQ-IELFTHV-PVLRNFVDHLKSRNFNVCAVYLLDSQFI 144 (238)
Q Consensus 78 ~~~~~~~~s~~la~~l--~~~~~p~~lilDEP---t~-LD~~~~~-~~~~~ll~~l~~~~~tvi~v~l~d~~~~ 144 (238)
.....+ ..+++++ +. +|+++|+||| |+ +|..+.. .++ +.+.+ .|.+++++ +|+.
T Consensus 638 --~~~~e~-~~la~il~~a~--~p~LlLLDEpgrGTs~lD~~~~~~~i~-~~L~~---~g~~vl~~----TH~~ 698 (765)
T 1ewq_A 638 --TFMVEM-EEVALILKEAT--ENSLVLLDEVGRGTSSLDGVAIATAVA-EALHE---RRAYTLFA----THYF 698 (765)
T ss_dssp --HHHHHH-HHHHHHHHHCC--TTEEEEEESTTTTSCHHHHHHHHHHHH-HHHHH---HTCEEEEE----CCCH
T ss_pred --HHHHHH-HHHHHHHHhcc--CCCEEEEECCCCCCCCcCHHHHHHHHH-HHHHh---CCCEEEEE----eCCH
Confidence 111223 6677777 66 9999999999 88 9998763 444 44443 57777776 4654
No 100
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.24 E-value=2.6e-13 Score=113.04 Aligned_cols=136 Identities=14% Similarity=0.146 Sum_probs=77.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC--------CCCCC-CCCCChh----------------hh-
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-PVAMDIR----------------EL- 56 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~--------~~~~~-~~~~~i~----------------~~- 56 (238)
-+++|+||||||||||+++|+|++ | |+|.+ |.+... +.++| +++.... .+
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 99 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNEDFLEYDNYANNF 99 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEE
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhccchhhhhhccccc
Confidence 468999999999999999999998 5 99998 654311 23343 2211100 00
Q ss_pred -----hhHHHHHHHcCCCCCCchhhhHHhhhhhHH--HHH-----HHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHH
Q 026486 57 -----ISLEDVMEELGLGPNGGLIYCMEHLEDNLD--DWL-----AEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV 123 (238)
Q Consensus 57 -----i~~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~l-----a~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll 123 (238)
-.++++++..... ... ..++++++ +++ ++++.. +|+++++|||++ +|..+...+. +.+
T Consensus 100 ~g~~~~~i~~~l~~~~~~-----il~-~~lsggq~qR~~i~~~~~~~~ll~--~~~~~~Lde~~~~~d~~~~~~i~-~~l 170 (218)
T 1z6g_A 100 YGTLKSEYDKAKEQNKIC-----LFE-MNINGVKQLKKSTHIKNALYIFIK--PPSTDVLLSRLLTRNTENQEQIQ-KRM 170 (218)
T ss_dssp EEEEHHHHHHHHHTTCEE-----EEE-ECHHHHHHHTTCSSCCSCEEEEEE--CSCHHHHHHHHHHTCCCCHHHHH-HHH
T ss_pred CCCcHHHHHHHHhCCCcE-----EEE-ecHHHHHHHHHHhcCCCcEEEEEe--CcCHHHHHHHHHhcCCCCHHHHH-HHH
Confidence 0134444432211 000 01233333 455 456666 899999999998 9998877776 545
Q ss_pred HHHHh-------CCCeEEEEEecccccccchhHHHhhhH
Q 026486 124 DHLKS-------RNFNVCAVYLLDSQFITDVTKFISGCM 155 (238)
Q Consensus 124 ~~l~~-------~~~tvi~v~l~d~~~~~d~~~~~~~~l 155 (238)
.++.+ .+...|++. +...+....+..++
T Consensus 171 ~~~~~~~~~~h~~~~d~iiv~----~~~~ea~~~~~~ii 205 (218)
T 1z6g_A 171 EQLNIELHEANLLNFNLSIIN----DDLTLTYQQLKNYL 205 (218)
T ss_dssp HHHHHHHHHHTTSCCSEEEEC----SSHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccCCCEEEEC----CCHHHHHHHHHHHH
Confidence 44422 345565552 44444444444333
No 101
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.23 E-value=1.3e-11 Score=105.96 Aligned_cols=126 Identities=13% Similarity=0.099 Sum_probs=72.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC-CCCCC-CCCCChhh---h----------hhHHHHHHHcC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-ENFDY-PVAMDIRE---L----------ISLEDVMEELG 67 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-~~~~~-~~~~~i~~---~----------i~~~~~l~~~~ 67 (238)
-+++|+||||||||||++.+++.+.. |.+. .|.++.. ....| ....+... . ....++++.++
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~~~~--g~~~-~g~~~~~~~~v~~~~~e~~~~~~~~r~~~~g~~~~~~~~~~~~~~l~ 107 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQIAG--GPDL-LEVGELPTGPVIYLPAEDPPTAIHHRLHALGAHLSAEERQAVADGLL 107 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHT--CCCT-TCCCCCCCCCEEEEESSSCHHHHHHHHHHHHTTSCHHHHHHHHHHEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHhc--CCCc-CCCccCCCccEEEEECCCCHHHHHHHHHHHHhhcChhhhhhccCceE
Confidence 36899999999999999999986653 3221 1222210 11111 00001100 0 01334566666
Q ss_pred CCCCCchhhhHHhhhhhHHHHHHHHHhccCCCCEEEEeCCCc---ccHHhH---HHHHHHHHHHHH-hCCCeEEEEE
Q 026486 68 LGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ---IELFTH---VPVLRNFVDHLK-SRNFNVCAVY 137 (238)
Q Consensus 68 l~~~~~~~~~~~~~~~~~s~~la~~l~~~~~p~~lilDEPt~---LD~~~~---~~~~~~ll~~l~-~~~~tvi~v~ 137 (238)
+.+..... ...++.+. ...+++++. +|+++|+|||++ +|.... ..++ +.++++. +.|.++++++
T Consensus 108 l~~~~~~~--~~~ls~g~-~~~i~~l~~--~~~livlDe~~~~~~~d~~~~~~~~~~~-~~L~~l~~~~g~tvi~i~ 178 (279)
T 1nlf_A 108 IQPLIGSL--PNIMAPEW-FDGLKRAAE--GRRLMVLDTLRRFHIEEENASGPMAQVI-GRMEAIAADTGCSIVFLH 178 (279)
T ss_dssp ECCCTTSC--CCTTSHHH-HHHHHHHHT--TCSEEEEECGGGGCCSCTTCHHHHHHHH-HHHHHHHHHHCCEEEEEE
T ss_pred EeecCCCC--cccCCHHH-HHHHHHhcC--CCCEEEECCHHHhcCCCcCchHHHHHHH-HHHHHHHHHcCCEEEEEe
Confidence 65432111 12233444 555677888 999999999997 566433 6666 6677775 4588888884
No 102
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.20 E-value=1.3e-11 Score=120.60 Aligned_cols=118 Identities=14% Similarity=0.123 Sum_probs=66.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCc-CCCceEEEeeecCCC-CCCCCCCCCChhhhhhHHHHHHHcCCCCCCchhhhHHh
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCE-TVRRTMHIVNLDPAA-ENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH 80 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~-~~~G~i~i~~~d~~~-~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~ 80 (238)
-+++|+||||||||||+|+++|+.. ...|.. -|+. ..+++... +...+.+.+.+.. ++ ..
T Consensus 608 ~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~-----vpa~~~~i~~~~~--i~~~~~~~d~l~~-~~----------st 669 (800)
T 1wb9_A 608 RMLIITGPNMGGKSTYMRQTALIALMAYIGSY-----VPAQKVEIGPIDR--IFTRVGAADDLAS-GR----------ST 669 (800)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHTTTCC-----BSSSEEEECCCCE--EEEEEC----------------------
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHHhcCcc-----cchhcccceeHHH--HHhhCCHHHHHHh-hh----------hh
Confidence 3689999999999999999999743 223311 1111 11222110 1111112221110 11 11
Q ss_pred hhhhHHHHHHHH--HhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CCCeEEEEEeccccccc
Q 026486 81 LEDNLDDWLAEE--LDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNVCAVYLLDSQFIT 145 (238)
Q Consensus 81 ~~~~~s~~la~~--l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~~tvi~v~l~d~~~~~ 145 (238)
++.++ ..++.+ .+. +|+++|+|||++ +|+.....+...+++.+.+ .|.+++++ +|+..
T Consensus 670 f~~e~-~~~~~il~~a~--~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~----TH~~e 731 (800)
T 1wb9_A 670 FMVEM-TETANILHNAT--EYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFA----THYFE 731 (800)
T ss_dssp CHHHH-HHHHHHHHHCC--TTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEE----CSCGG
T ss_pred hhHHH-HHHHHHHHhcc--CCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEE----eCCHH
Confidence 22223 223333 355 999999999998 8888777764488999877 48888777 46653
No 103
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.18 E-value=3.3e-12 Score=106.72 Aligned_cols=113 Identities=16% Similarity=0.175 Sum_probs=67.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcC--CCceEEEeeecCCC---CCCCC-CCCCChhhhhhHHH-HHHHcCCCCCCchh
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCET--VRRTMHIVNLDPAA---ENFDY-PVAMDIRELISLED-VMEELGLGPNGGLI 75 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~--~~G~i~i~~~d~~~---~~~~~-~~~~~i~~~i~~~~-~l~~~~l~~~~~~~ 75 (238)
-+++|+||||||||||+++|+|.++| ..|.|.+.+.++.. +.++| +++....+...+.. .++...+..+ .
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~~~---~ 93 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGN---Y 93 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTE---E
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHHHhc---c
Confidence 46899999999999999999999986 68999998877643 23455 33211111111100 0111111110 0
Q ss_pred hhHHhhhhhHHHHHHHHHhccCCCCEEEEeCCCcccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 026486 76 YCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAV 136 (238)
Q Consensus 76 ~~~~~~~~~~s~~la~~l~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~tvi~v 136 (238)
+. ... ..+ ..+.. .++++||| ||+.+...+. +.+. ++.+++++
T Consensus 94 yg-----~~~-~~v-~~~l~--~G~illLD----LD~~~~~~i~-~~l~----~~~tI~i~ 136 (219)
T 1s96_A 94 YG-----TSR-EAI-EQVLA--TGVDVFLD----IDWQGAQQIR-QKMP----HARSIFIL 136 (219)
T ss_dssp EE-----EEH-HHH-HHHHT--TTCEEEEE----CCHHHHHHHH-HHCT----TCEEEEEE
T ss_pred CC-----CCH-HHH-HHHHh--cCCeEEEE----ECHHHHHHHH-HHcc----CCEEEEEE
Confidence 10 011 222 33444 78999999 9999998877 5443 46666555
No 104
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.14 E-value=1.5e-11 Score=112.75 Aligned_cols=148 Identities=9% Similarity=-0.002 Sum_probs=90.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeee---cCCC------------CCCCC-CC-CCChhhhhhHHHH----
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL---DPAA------------ENFDY-PV-AMDIRELISLEDV---- 62 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~---d~~~------------~~~~~-~~-~~~i~~~i~~~~~---- 62 (238)
.++|+||||||||||+++|+|+.+|+.|.|.++|. +... ..+.| ++ +.......++.+.
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ 238 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADVSPLLRMQGAAYATRI 238 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccccccCceEEEEECCCCCHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999997 3211 12233 23 2333333332221
Q ss_pred HHHcCC-CCCC-chhhhHHhhhhhHH-HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh---C-CC-eE
Q 026486 63 MEELGL-GPNG-GLIYCMEHLEDNLD-DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS---R-NF-NV 133 (238)
Q Consensus 63 l~~~~l-~~~~-~~~~~~~~~~~~~s-~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~---~-~~-tv 133 (238)
.+.++- +... .....+..++.+++ +++| +. +|++ ++ +|+..+..+. ++++++.+ . |. |.
T Consensus 239 ae~~~~~~~~v~~~ld~l~~lS~g~qrvslA---l~--~p~~------t~glD~~~~~~l~-~ll~r~~~~~~~~GsiT~ 306 (438)
T 2dpy_A 239 AEDFRDRGQHVLLIMDSLTRYAMAQREIALA---IG--EPPA------TKGYPPSVFAKLP-ALVERAGNGIHGGGSITA 306 (438)
T ss_dssp HHHHHTTTCEEEEEEECHHHHHHHHHHHHHH---TT--CCCC------SSSCCTTHHHHHH-HHHTTCSCCSTTSCEEEE
T ss_pred HHHHHhCCCCHHHHHHhHHHHHHHHHHHHHH---hC--CCcc------cccCCHHHHHHHH-HHHHHHHhccCCCCcccc
Confidence 122211 1110 01112344555542 4444 55 7877 77 9999999998 88888755 2 42 23
Q ss_pred EEEEecccccccchhHHHhhhHHHHHHHHhhc
Q 026486 134 CAVYLLDSQFITDVTKFISGCMASLSAMVQLE 165 (238)
Q Consensus 134 i~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~~ 165 (238)
+...++.+|.++ ..+++.++....+.+.+.
T Consensus 307 ~~tVlv~tHdl~--~~iad~v~~l~dG~Ivl~ 336 (438)
T 2dpy_A 307 FYTVLTEGDDQQ--DPIADSARAILDGHIVLS 336 (438)
T ss_dssp EEEEECSSSCSC--CHHHHHHHHHSSEEEEEC
T ss_pred eeEEEEeCCCcc--chhhceEEEEeCcEEEEe
Confidence 333356678887 566777777766655443
No 105
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.13 E-value=5e-11 Score=106.15 Aligned_cols=149 Identities=11% Similarity=0.065 Sum_probs=88.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC--CCC------------CC-CC-CCChhhhhhH----HHHH
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--ENF------------DY-PV-AMDIRELISL----EDVM 63 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~--~~~------------~~-~~-~~~i~~~i~~----~~~l 63 (238)
+++|+||||||||||+++|+|+.+|+.|.+.+.|.+... +.+ .+ .+ +....+.+.. ..+.
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~~~~~~~~r~~~~~~~~~~a 152 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQSTLSKCVLVVTTSDRPALERMKAAFTATTIA 152 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEECTTSCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhhhhhhceEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999998865311 000 01 00 1111222211 1111
Q ss_pred HHc-CCCCCCc-hhhhHHhhhhhHHHHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh--CCC-eEEEEE
Q 026486 64 EEL-GLGPNGG-LIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS--RNF-NVCAVY 137 (238)
Q Consensus 64 ~~~-~l~~~~~-~~~~~~~~~~~~s~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~--~~~-tvi~v~ 137 (238)
+.+ ..+.+-. .......++.++ ..++.+ +. +|++ +. +|+..+..+. ++++++.+ .|. |.+.+.
T Consensus 153 e~~~~~~~~vl~~ld~~~~lS~g~-r~v~la-l~--~p~~------t~Gldp~~~~~l~-~ller~~~~~~GsiT~~~tV 221 (347)
T 2obl_A 153 EYFRDQGKNVLLMMDSVTRYARAA-RDVGLA-SG--EPDV------RGGFPPSVFSSLP-KLLERAGPAPKGSITAIYTV 221 (347)
T ss_dssp HHHHTTTCEEEEEEETHHHHHHHH-HHHHHH-TT--CCCC------BTTBCHHHHHHHH-HHHTTCEECSSSEEEEEEEE
T ss_pred HHHHhccccHHHHHhhHHHHHHHH-HHHHHH-cC--CCCc------ccCCCHHHHHHHH-HHHHHHhCCCCCCeeeEEEE
Confidence 111 1111100 001234455555 333333 34 6765 67 9999999998 99998864 353 333344
Q ss_pred ecccccccchhHHHhhhHHHHHHHHhhc
Q 026486 138 LLDSQFITDVTKFISGCMASLSAMVQLE 165 (238)
Q Consensus 138 l~d~~~~~d~~~~~~~~l~~~~~~~~~~ 165 (238)
++.+|.++ ..+++.+.....+.+.++
T Consensus 222 l~~thdl~--~~i~d~v~~i~dG~Ivl~ 247 (347)
T 2obl_A 222 LLESDNVN--DPIGDEVRSILDGHIVLT 247 (347)
T ss_dssp ECCSSCCC--CHHHHHHHHHCSEEEEBC
T ss_pred EEeCCCCC--ChhhhheEEeeCcEEEEe
Confidence 67789888 567888888777766544
No 106
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.11 E-value=3.9e-11 Score=107.14 Aligned_cols=142 Identities=8% Similarity=0.017 Sum_probs=74.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCC----ceEEEeeecCCCCCCCCCCCCChhhhhhH-H-H-H---HH---HcCCC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVR----RTMHIVNLDPAAENFDYPVAMDIRELISL-E-D-V---ME---ELGLG 69 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~----G~i~i~~~d~~~~~~~~~~~~~i~~~i~~-~-~-~---l~---~~~l~ 69 (238)
-.++|+||||||||||+++|+|+++|+. |++.+.+..... ...+.. .+. +.+.. . + . .. .+-+.
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~-~~~~~~-~~~-~~I~~~~q~~~~~~~t~~~nl~~~ 247 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGD-EQAMQY-SDY-PQMALGHQRYIDYAVRHSHKIAFI 247 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSC-TTSSCT-TTH-HHHHHHHHHHHHHHHHHCSSEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCC-cccCCh-hHH-HHHHHHHHHHHHHHHhccCCEEEE
Confidence 3579999999999999999999999999 888764321111 111111 111 11211 0 0 0 01 01111
Q ss_pred CCCchh-hhHHhhhh-hHHHHHHHHHh-ccCCCCEEEEeC---CC------c-ccHHhHHHHHHHHHHHHH-hCCCeEEE
Q 026486 70 PNGGLI-YCMEHLED-NLDDWLAEELD-NYLDDDYLVFDC---PG------Q-IELFTHVPVLRNFVDHLK-SRNFNVCA 135 (238)
Q Consensus 70 ~~~~~~-~~~~~~~~-~~s~~la~~l~-~~~~p~~lilDE---Pt------~-LD~~~~~~~~~~ll~~l~-~~~~tvi~ 135 (238)
...... .......+ ..+..++++.. . +|+++++|| |+ . +|...+..+. +.++++. +.+.++++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~-~~l~~l~~~~~~~ili 324 (365)
T 1lw7_A 248 DTDFITTQAFCIQYEGKAHPFLDSMIKEY--PFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQ-QLLKKLLDKYKVPYIE 324 (365)
T ss_dssp SSCHHHHHHHHHHHHSCCCHHHHHHHHHS--CCSEEEEEECCCC-----------CCSHHHHH-HHHHHHHHGGGCCCEE
T ss_pred eCCchHHHHHHHHHcCCCCHHHHHHHhhc--CCCEEEECCCCCCcccCCCcCCccHHHHHHHH-HHHHHHHHHcCCCEEE
Confidence 110000 00001111 11145555543 5 899999999 63 4 8888888888 7776664 34778876
Q ss_pred EEecccccccchhHHHhhhH
Q 026486 136 VYLLDSQFITDVTKFISGCM 155 (238)
Q Consensus 136 v~l~d~~~~~d~~~~~~~~l 155 (238)
+. | ......+++.+.
T Consensus 325 ld----e-~~~~~r~~~~i~ 339 (365)
T 1lw7_A 325 IE----S-PSYLDRYNQVKA 339 (365)
T ss_dssp EE----C-SSHHHHHHHHHH
T ss_pred eC----C-CCHHHHHHHHHH
Confidence 63 2 234445555443
No 107
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.10 E-value=7e-10 Score=90.82 Aligned_cols=118 Identities=13% Similarity=0.103 Sum_probs=62.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCCCCCCCCCCCChhhh-----hhHHHHHHHcCCCCCCchhhh
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIREL-----ISLEDVMEELGLGPNGGLIYC 77 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~~~~~~i~~~-----i~~~~~l~~~~l~~~~~~~~~ 77 (238)
-+++|+||||||||||++.+++ + .++.+.+...+.. +.+ ..+.+. +..+++++.+.+.....
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~--~-~~~~v~~i~~~~~-----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 87 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL--L-SGKKVAYVDTEGG-----FSP-ERLVQMAETRGLNPEEALSRFILFTPSD---- 87 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH--H-HCSEEEEEESSCC-----CCH-HHHHHHHHTTTCCHHHHHHHEEEECCTT----
T ss_pred EEEEEECCCCCCHHHHHHHHHH--H-cCCcEEEEECCCC-----CCH-HHHHHHHHhcCCChHHHhhcEEEEecCC----
Confidence 4689999999999999999999 3 3445554433220 000 001100 00122222222111100
Q ss_pred HHhhhhhHHHHHHHHHhccCCCCEEEEeCCCc-ccHHhH--------HHHHHHHHHHHHh-CCCeEEEEE
Q 026486 78 MEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTH--------VPVLRNFVDHLKS-RNFNVCAVY 137 (238)
Q Consensus 78 ~~~~~~~~s~~la~~l~~~~~p~~lilDEPt~-LD~~~~--------~~~~~~ll~~l~~-~~~tvi~v~ 137 (238)
.+.. ... ...++++..- +|+++|+|||++ +|.... ..++ +.++++.+ .+.++++++
T Consensus 88 ~~~~-~~~-~~~~~~l~~~-~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~-~~L~~l~~~~~~~vi~~~ 153 (220)
T 2cvh_A 88 FKEQ-RRV-IGSLKKTVDS-NFALVVVDSITAHYRAEENRSGLIAELSRQL-QVLLWIARKHNIPVIVIN 153 (220)
T ss_dssp TSHH-HHH-HHHHHHHCCT-TEEEEEEECCCCCTTGGGGSSTTHHHHHHHH-HHHHHHHHHHTCCEEEEE
T ss_pred HHHH-HHH-HHHHHHHhhc-CCCEEEEcCcHHHhhhcCchHHHHHHHHHHH-HHHHHHHHHcCCEEEEEe
Confidence 0000 011 4456677761 399999999998 887432 2233 33555544 488887774
No 108
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.10 E-value=7.9e-10 Score=91.88 Aligned_cols=37 Identities=19% Similarity=0.223 Sum_probs=29.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHh--CCcC-----CCceEEEeeec
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYR--HCET-----VRRTMHIVNLD 39 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g--~l~~-----~~G~i~i~~~d 39 (238)
-+++|+||||||||||++.+++ ..++ ..|.+++.+.+
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 4689999999999999999999 5554 46677777644
No 109
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.09 E-value=2.3e-12 Score=105.82 Aligned_cols=121 Identities=11% Similarity=0.069 Sum_probs=71.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCCCCCCCCCCCChhhh-------------hhHHHHHHHcCCC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIREL-------------ISLEDVMEELGLG 69 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~~~~~~i~~~-------------i~~~~~l~~~~l~ 69 (238)
.+++|+||||||||||+++|+|++.| .+.+...|+...... ..++++. -.+.+.++.++++
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~~~~---~i~~v~~d~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 80 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALARTLGE---RVALLPMDHYYKDLG---HLPLEERLRVNYDHPDAFDLALYLEHAQALLRG 80 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHGG---GEEEEEGGGCBCCCT---TSCHHHHHHSCTTSGGGBCHHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCC---CeEEEecCccccCcc---cccHHHhcCCCCCChhhhhHHHHHHHHHHHHcC
Confidence 68999999999999999999999876 566666554221111 1111111 1245566666665
Q ss_pred CCCchhhhHHhhhhh------HHHHHHHHHhccCCCCEEEEeCCCc--------ccHHhHHHHHHHHHHHH-HhCCCeEE
Q 026486 70 PNGGLIYCMEHLEDN------LDDWLAEELDNYLDDDYLVFDCPGQ--------IELFTHVPVLRNFVDHL-KSRNFNVC 134 (238)
Q Consensus 70 ~~~~~~~~~~~~~~~------~s~~la~~l~~~~~p~~lilDEPt~--------LD~~~~~~~~~~ll~~l-~~~~~tvi 134 (238)
...... .. .++.+ +++.++++++. +|.++++|||++ ||+.....+. +.+++. +++|.+++
T Consensus 81 ~~~~~~-~~-~~s~g~~~~~~~~~~~~~~li~--~~~ll~~de~~~~~~d~~i~ld~~~~~~~~-r~l~r~~~~~g~t~~ 155 (211)
T 3asz_A 81 LPVEMP-VY-DFRAYTRSPRRTPVRPAPVVIL--EGILVLYPKELRDLMDLKVFVDADADERFI-RRLKRDVLERGRSLE 155 (211)
T ss_dssp CCEEEC-CE-ETTTTEECSSCEEECCCSEEEE--ESTTTTSSHHHHTTCSEEEEEECCHHHHHH-HHHHHHHHHSCCCHH
T ss_pred CCcCCC-cc-cCcccCCCCCeEEeCCCcEEEE--eehhhccCHHHHHhcCEEEEEeCCHHHHHH-HHHHHHHHHhCCCHH
Confidence 421110 00 01111 01344566666 788888888874 6887777777 555554 45677654
No 110
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.06 E-value=3.7e-10 Score=99.38 Aligned_cols=116 Identities=14% Similarity=0.232 Sum_probs=59.5
Q ss_pred EEEEcCCCCcHHHHHHHHHh-CCcCCCceEEEeeecCCC-----CCCCC-CCC---------CChhhhhhHHHHHHHcCC
Q 026486 5 QLVIGPAGSGKSTYCSSLYR-HCETVRRTMHIVNLDPAA-----ENFDY-PVA---------MDIRELISLEDVMEELGL 68 (238)
Q Consensus 5 v~IiGpnGSGKSTLl~~l~g-~l~~~~G~i~i~~~d~~~-----~~~~~-~~~---------~~i~~~i~~~~~l~~~~l 68 (238)
+.+.||||+||||+++++++ ++.+..|.+.++|.+... ..+.+ ++. ....+...+.+.++.+.-
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 118 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQ 118 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEEEECCC----CCHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceEEecHhhcCCcchHHHHHHHHHHHH
Confidence 78999999999999999999 788999999988765321 11111 000 000000012233332211
Q ss_pred CCCCchhhhHHhhhhhHHHHHHHHHhccCCCCEEEEeCCCcccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 026486 69 GPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAV 136 (238)
Q Consensus 69 ~~~~~~~~~~~~~~~~~s~~la~~l~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~tvi~v 136 (238)
.... .... .+ ..+.. +|+++|+|||+.+|...+..+. +.+++.. .+.++|++
T Consensus 119 ~~~~------~~~~-~l-----s~l~~--~~~vlilDE~~~L~~~~~~~L~-~~le~~~-~~~~~Il~ 170 (354)
T 1sxj_E 119 MEQV------DFQD-SK-----DGLAH--RYKCVIINEANSLTKDAQAALR-RTMEKYS-KNIRLIMV 170 (354)
T ss_dssp TTC--------------------------CCEEEEEECTTSSCHHHHHHHH-HHHHHST-TTEEEEEE
T ss_pred hccc------cccc-cc-----cccCC--CCeEEEEeCccccCHHHHHHHH-HHHHhhc-CCCEEEEE
Confidence 1000 0000 00 01344 8999999999999999887777 7777653 35555555
No 111
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.01 E-value=1.5e-09 Score=96.89 Aligned_cols=126 Identities=13% Similarity=0.058 Sum_probs=73.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCCCCCCCCCCCChhhhhhHHHHHHHcCCCCCCchhhhHHhhh
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~~~ 82 (238)
-.++|+||||||||||+++|+|+++|++|.|.+.|... +......+....+...+. .++. ...
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e----~~~~~~~~~v~~v~~q~~----~~~~---------~~~ 238 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPE----LFLPDHPNHVHLFYPSEA----KEEE---------NAP 238 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSC----CCCTTCSSEEEEECC-----------------------
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccc----cCccccCCEEEEeecCcc----cccc---------ccc
Confidence 36899999999999999999999999999999987421 111000000000000000 0000 011
Q ss_pred hhHHHHHHHHHhccCCCCEEEEeCCCcccHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccchhHHHhhhHHHHH
Q 026486 83 DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLS 159 (238)
Q Consensus 83 ~~~s~~la~~l~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~ 159 (238)
......++.++.. +|+.+++|||.. .+.. ++++.+.....+++.. + |. .++...++++.....
T Consensus 239 ~t~~~~i~~~l~~--~pd~~l~~e~r~------~~~~-~~l~~l~~g~~~~l~t-~---H~-~~~~~~~~Rl~~l~~ 301 (361)
T 2gza_A 239 VTAATLLRSCLRM--KPTRILLAELRG------GEAY-DFINVAASGHGGSITS-C---HA-GSCELTFERLALMVL 301 (361)
T ss_dssp CCHHHHHHHHTTS--CCSEEEESCCCS------THHH-HHHHHHHTTCCSCEEE-E---EC-SSHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHhc--CCCEEEEcCchH------HHHH-HHHHHHhcCCCeEEEE-E---CC-CCHHHHHHHHHHHHh
Confidence 1233677778888 999999999985 2334 5666775433343333 2 43 346677776665543
No 112
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.00 E-value=1.2e-09 Score=95.54 Aligned_cols=94 Identities=20% Similarity=0.246 Sum_probs=62.3
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCCCCCCCCCCCChhhhhhHHHHHHHcCCCCCCchhhhHHhh
Q 026486 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (238)
Q Consensus 2 ~~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~~ 81 (238)
..+++|+|||||||||+++.|++++.+.+|+|.+.+.|+... ...+. +..+.+..++......... + .
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~--------~a~eq--L~~~~~~~gl~~~~~~s~~-~-~ 171 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRA--------AAIEQ--LKIWGERVGATVISHSEGA-D-P 171 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCH--------HHHHH--HHHHHHHHTCEEECCSTTC-C-H
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccH--------HHHHH--HHHHHHHcCCcEEecCCcc-C-H
Confidence 357899999999999999999999999999999999885321 01111 3345556565321100000 0 0
Q ss_pred hhhHHHHHHHHHhccCCCCEEEEeCCCc
Q 026486 82 EDNLDDWLAEELDNYLDDDYLVFDCPGQ 109 (238)
Q Consensus 82 ~~~~s~~la~~l~~~~~p~~lilDEPt~ 109 (238)
..-...++++++.. +|+++|+|||+.
T Consensus 172 ~~v~~~al~~a~~~--~~dvvIiDtpg~ 197 (306)
T 1vma_A 172 AAVAFDAVAHALAR--NKDVVIIDTAGR 197 (306)
T ss_dssp HHHHHHHHHHHHHT--TCSEEEEEECCC
T ss_pred HHHHHHHHHHHHhc--CCCEEEEECCCc
Confidence 00001367778888 999999999996
No 113
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.99 E-value=2.7e-10 Score=103.77 Aligned_cols=121 Identities=16% Similarity=0.262 Sum_probs=59.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCc--eEEEeeecC-CCCCCCC-------CCCCChhhhhhHHHHHHHcCCCCCC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRR--TMHIVNLDP-AAENFDY-------PVAMDIRELISLEDVMEELGLGPNG 72 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G--~i~i~~~d~-~~~~~~~-------~~~~~i~~~i~~~~~l~~~~l~~~~ 72 (238)
+-++|+||||||||||+++++|...+..| .+.+.+... ....+.+ ...++++|++........ ..
T Consensus 32 f~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~-----~~ 106 (418)
T 2qag_C 32 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDN-----SN 106 (418)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC---------------
T ss_pred EEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccc-----hh
Confidence 55799999999999999999999875443 111111000 0001111 123345554433221100 00
Q ss_pred chhhhHHhhhhhHH------HHHHHHHhccCCCC---EEEEeCCC-c-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 026486 73 GLIYCMEHLEDNLD------DWLAEELDNYLDDD---YLVFDCPG-Q-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (238)
Q Consensus 73 ~~~~~~~~~~~~~s------~~la~~l~~~~~p~---~lilDEPt-~-LD~~~~~~~~~~ll~~l~~~~~tvi~v 136 (238)
......+++...++ +.+++++.. +|+ ++++|||| . +|+... .+++.+.. +.++|+|
T Consensus 107 ~~~~i~~~i~~~~~~~l~qr~~IaRal~~--d~~~~vlL~ldePt~~~L~~~d~-----~~lk~L~~-~v~iIlV 173 (418)
T 2qag_C 107 CWQPVIDYIDSKFEDYLNAESRVNRRQMP--DNRVQCCLYFIAPSGHGLKPLDI-----EFMKRLHE-KVNIIPL 173 (418)
T ss_dssp -CHHHHHHHHHHHHHHTTTSCC-CCCCCC--CC-CCEEEEECCC-CCSCCHHHH-----HHHHHHTT-TSEEEEE
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CCCeeEEEEEecCcccCCCHHHH-----HHHHHHhc-cCcEEEE
Confidence 00000011111111 456777777 999 99999998 5 988763 44556643 6666655
No 114
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.99 E-value=3.5e-09 Score=92.05 Aligned_cols=107 Identities=18% Similarity=0.101 Sum_probs=71.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCCCCCCCCCCCChhhhhhHHHHHHHcCCCCCC--chhhhHHh
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNG--GLIYCMEH 80 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~--~~~~~~~~ 80 (238)
.+++++|+||+||||+++.+++++.+.+|+|.+.+.|+.... ..+ ....+.+..++.... ....+.+
T Consensus 99 ~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~--------~~~--ql~~~~~~~~l~~~~~~~~~~p~~- 167 (295)
T 1ls1_A 99 NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPA--------ARE--QLRLLGEKVGVPVLEVMDGESPES- 167 (295)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHH--------HHH--HHHHHHHHHTCCEEECCTTCCHHH-
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHh--------HHH--HHHHhcccCCeEEEEcCCCCCHHH-
Confidence 478899999999999999999999999999999998864310 001 122334555553211 0000111
Q ss_pred hhhhHHHHHHHHHhccCCCCEEEEeCC-Cc-ccHHhHHHHHHHHHHHH
Q 026486 81 LEDNLDDWLAEELDNYLDDDYLVFDCP-GQ-IELFTHVPVLRNFVDHL 126 (238)
Q Consensus 81 ~~~~~s~~la~~l~~~~~p~~lilDEP-t~-LD~~~~~~~~~~ll~~l 126 (238)
+ ++.+++.+... +++++|+||| +. +|......+. .+.+.+
T Consensus 168 l---~~~~l~~~~~~--~~D~viiDtpp~~~~d~~~~~~l~-~~~~~~ 209 (295)
T 1ls1_A 168 I---RRRVEEKARLE--ARDLILVDTAGRLQIDEPLMGELA-RLKEVL 209 (295)
T ss_dssp H---HHHHHHHHHHH--TCCEEEEECCCCSSCCHHHHHHHH-HHHHHH
T ss_pred H---HHHHHHHHHhC--CCCEEEEeCCCCccccHHHHHHHH-HHhhhc
Confidence 1 23566666667 8999999999 45 8887777766 666655
No 115
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.99 E-value=4.5e-11 Score=100.71 Aligned_cols=37 Identities=24% Similarity=0.431 Sum_probs=33.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHH---hCCcCCCceEEEeeec
Q 026486 3 YAQLVIGPAGSGKSTYCSSLY---RHCETVRRTMHIVNLD 39 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~---g~l~~~~G~i~i~~~d 39 (238)
.+++|+|||||||||+++.|+ |+..++.|++.+.+.+
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~ 67 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIK 67 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHh
Confidence 478999999999999999999 9999999998887654
No 116
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.96 E-value=1.3e-08 Score=94.18 Aligned_cols=39 Identities=26% Similarity=0.405 Sum_probs=36.1
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecC
Q 026486 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (238)
Q Consensus 2 ~~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~ 40 (238)
..+++|+||||||||||++.|+|++++++|+|.+.+.|+
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~ 331 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDT 331 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCT
T ss_pred CeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcc
Confidence 358999999999999999999999999999999998775
No 117
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.96 E-value=1.7e-10 Score=91.56 Aligned_cols=37 Identities=14% Similarity=0.169 Sum_probs=34.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~ 40 (238)
-+++|+||||||||||+|+|+|++ |++|+|.+.|.++
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i 70 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTL 70 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEee
Confidence 368999999999999999999999 9999999988765
No 118
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.96 E-value=3.1e-09 Score=96.24 Aligned_cols=119 Identities=16% Similarity=0.154 Sum_probs=63.2
Q ss_pred eeEEEEcCCCCcHHHHHHH--HHhCCcCCCc-----eEEEeeecCCCCCCCCCCCCChhhhhhHHHHHHHcCCCCCC---
Q 026486 3 YAQLVIGPAGSGKSTYCSS--LYRHCETVRR-----TMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNG--- 72 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~--l~g~l~~~~G-----~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~--- 72 (238)
-+++|+||||||||||++. +.+..+++.| .+++++.+.. +. ..+.++.+.+|+.+..
T Consensus 179 ei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~----------~~---~rl~~~a~~~gl~~~~vle 245 (400)
T 3lda_A 179 SITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTF----------RP---VRLVSIAQRFGLDPDDALN 245 (400)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCC----------CH---HHHHHHHHHTTCCHHHHHH
T ss_pred cEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCcc----------CH---HHHHHHHHHcCCChHhHhh
Confidence 3689999999999999994 4566665333 6666654321 10 1133344445543210
Q ss_pred --c--hhhhHHhhhhhHHHHHHHHHhccCCCCEEEEeCCCc-ccHHhH------------HHHHHHHHHHHHh-CCCeEE
Q 026486 73 --G--LIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTH------------VPVLRNFVDHLKS-RNFNVC 134 (238)
Q Consensus 73 --~--~~~~~~~~~~~~s~~la~~l~~~~~p~~lilDEPt~-LD~~~~------------~~~~~~ll~~l~~-~~~tvi 134 (238)
. .....+...... ..+...+... +|+++++|+|+. ++.... ..++ +.++++++ .|.+++
T Consensus 246 ni~~~~~~~~~~~~~~l-~~~~~~l~~~-~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il-~~L~~lake~gitVI 322 (400)
T 3lda_A 246 NVAYARAYNADHQLRLL-DAAAQMMSES-RFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFM-RALQRLADQFGVAVV 322 (400)
T ss_dssp TEEEEECCSHHHHHHHH-HHHHHHHHHS-CEEEEEEETGGGGCC------CCHHHHHHHHHHHH-HHHHHHHHHHCCEEE
T ss_pred cEEEeccCChHHHHHHH-HHHHHHHHhc-CCceEEecchhhhCchhhcCccchHHHHHHHHHHH-HHHHHHHHHcCCEEE
Confidence 0 000000010001 1111222222 799999999998 775432 3455 66666654 488988
Q ss_pred EEE
Q 026486 135 AVY 137 (238)
Q Consensus 135 ~v~ 137 (238)
+++
T Consensus 323 lv~ 325 (400)
T 3lda_A 323 VTN 325 (400)
T ss_dssp EEE
T ss_pred EEE
Confidence 884
No 119
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.95 E-value=1.2e-09 Score=88.04 Aligned_cols=37 Identities=32% Similarity=0.392 Sum_probs=32.3
Q ss_pred CCeeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecC
Q 026486 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (238)
Q Consensus 1 ~~~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~ 40 (238)
|..+++|+|||||||||+++.|++ +.+|.+.+++.++
T Consensus 1 mg~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~ 37 (189)
T 2bdt_A 1 MKKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDII 37 (189)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccch
Confidence 667899999999999999999997 5678999988654
No 120
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=98.91 E-value=4.3e-11 Score=104.77 Aligned_cols=98 Identities=17% Similarity=0.095 Sum_probs=62.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEee-ecCC------C-CCCCCCCCCChhhhhhHHHHHHHcCCCCCCch
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN-LDPA------A-ENFDYPVAMDIRELISLEDVMEELGLGPNGGL 74 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~-~d~~------~-~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~ 74 (238)
-+++|+||||||||||+++|+|++ +|+|.... .++. . +++.+.++.+ + .+.+.++.+ + +++-.
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~gl~---~G~I~~~v~q~~~lf~~ti~~~ni~~~~~~~--~--~~~~~i~~~-L-~~gld 197 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIHFL---GGSVLSFANHKSHFWLASLADTRAALVDDAT--H--ACWRYFDTY-L-RNALD 197 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHH---TCEEECGGGTTSGGGGGGGTTCSCEEEEEEC--H--HHHHHHHHT-T-TGGGG
T ss_pred CEEEEECCCCCcHHHHHHHHhhhc---CceEEEEecCccccccccHHHHhhccCcccc--H--HHHHHHHHH-h-HccCC
Confidence 368999999999999999999998 89997543 2210 0 1222211111 1 245556553 2 11100
Q ss_pred hhhHHhhhhhHHHHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHH
Q 026486 75 IYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVL 119 (238)
Q Consensus 75 ~~~~~~~~~~~s~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~ 119 (238)
-..++++++.. ||+++. +|++|| |+ ||+.+...+.
T Consensus 198 ---g~~LSgGqkQR-ARAll~--~p~iLl----Ts~LD~~~~~~i~ 233 (305)
T 2v9p_A 198 ---GYPVSIDRKHK-AAVQIK--APPLLV----TSNIDVQAEDRYL 233 (305)
T ss_dssp ---TCCEECCCSSC-CCCEEC--CCCEEE----EESSCSTTCGGGG
T ss_pred ---ccCcCHHHHHH-HHHHhC--CCCEEE----ECCCCHHHHHHHH
Confidence 12355555444 999999 999999 87 9999987665
No 121
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.90 E-value=6.6e-10 Score=90.36 Aligned_cols=126 Identities=13% Similarity=0.030 Sum_probs=66.1
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCC-----cCCCceEEEeee----------cCCCCC---------------CC-CCC-
Q 026486 2 GYAQLVIGPAGSGKSTYCSSLYRHC-----ETVRRTMHIVNL----------DPAAEN---------------FD-YPV- 49 (238)
Q Consensus 2 ~~~v~IiGpnGSGKSTLl~~l~g~l-----~~~~G~i~i~~~----------d~~~~~---------------~~-~~~- 49 (238)
.+.++|+|+||||||||++.++|.. .|+.|.+...+. |..... +. |.+
T Consensus 26 ~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~ 105 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEK 105 (210)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEECcCCcccccCHHHHHHHHHHHHHHHHh
Confidence 3678999999999999999999988 777777654221 110000 00 000
Q ss_pred -----------CCC--hhh-hhhHHHHHHHcCCCCCCchhhhHHhhhhhHH---HHHHHHHhccCCCCEEEEeCCCc-cc
Q 026486 50 -----------AMD--IRE-LISLEDVMEELGLGPNGGLIYCMEHLEDNLD---DWLAEELDNYLDDDYLVFDCPGQ-IE 111 (238)
Q Consensus 50 -----------~~~--i~~-~i~~~~~l~~~~l~~~~~~~~~~~~~~~~~s---~~la~~l~~~~~p~~lilDEPt~-LD 111 (238)
+.+ ... ...+.++++..++.... .....+.+.++.+ ...+++++. +|..++.|||++ +|
T Consensus 106 ~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~-v~nK~D~~s~~~~~~~~~~~~~~~~--~~~~~~~~~~~Sal~ 182 (210)
T 1pui_A 106 RQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLV-LLTKADKLASGARKAQLNMVREAVL--AFNGDVQVETFSSLK 182 (210)
T ss_dssp CTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEE-EEECGGGSCHHHHHHHHHHHHHHHG--GGCSCEEEEECBTTT
T ss_pred hhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEE-EEecccCCCchhHHHHHHHHHHHHH--hcCCCCceEEEeecC
Confidence 000 000 00133444555543211 0011233433321 456777777 888889999998 99
Q ss_pred HHhHHHHHHHHHHHHHhCCC
Q 026486 112 LFTHVPVLRNFVDHLKSRNF 131 (238)
Q Consensus 112 ~~~~~~~~~~ll~~l~~~~~ 131 (238)
.....+++ +.+.++.+++.
T Consensus 183 ~~~~~~l~-~~l~~~~~~~~ 201 (210)
T 1pui_A 183 KQGVDKLR-QKLDTWFSEMQ 201 (210)
T ss_dssp TBSHHHHH-HHHHHHHC---
T ss_pred CCCHHHHH-HHHHHHHhhcc
Confidence 99999999 77776655443
No 122
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.85 E-value=3.7e-09 Score=92.10 Aligned_cols=37 Identities=27% Similarity=0.340 Sum_probs=20.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC-CcCCCceEEEeeecC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRH-CETVRRTMHIVNLDP 40 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~-l~~~~G~i~i~~~d~ 40 (238)
+-++|+||||||||||++.|.|. +.|++| +.+.|.++
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~ 56 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKI 56 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC-----------------
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCccCCCC-cccCCccc
Confidence 56799999999999999999998 888888 76665443
No 123
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.84 E-value=2.7e-09 Score=97.25 Aligned_cols=49 Identities=12% Similarity=0.027 Sum_probs=38.6
Q ss_pred HHHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH-HHhCCCeEEEEE
Q 026486 86 DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH-LKSRNFNVCAVY 137 (238)
Q Consensus 86 s~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~-l~~~~~tvi~v~ 137 (238)
.+.++++|.. +.+++++|+|+. +.+.....+. +.+++ +...|.+++.+.
T Consensus 166 Dieilk~L~~--~~~vI~Vi~KtD~Lt~~E~~~l~-~~I~~~L~~~gi~I~~is 216 (427)
T 2qag_B 166 DLVTMKKLDS--KVNIIPIIAKADAISKSELTKFK-IKITSELVSNGVQIYQFP 216 (427)
T ss_dssp HHHHHHHTCS--CSEEEEEESCGGGSCHHHHHHHH-HHHHHHHBTTBCCCCCCC
T ss_pred HHHHHHHHhh--CCCEEEEEcchhccchHHHHHHH-HHHHHHHHHcCCcEEecC
Confidence 3788888886 999999999998 9888777777 55664 877788876553
No 124
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.83 E-value=1.4e-08 Score=88.34 Aligned_cols=92 Identities=14% Similarity=0.141 Sum_probs=57.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCc-eEEEeeecCCCCCCCCCCCCChhhhhhHHHHHHHcCCCCCCchhhhHHhh
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRR-TMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G-~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~~ 81 (238)
.+++++|||||||||+++.|++++.+.+| +|.+.+.|+.. ....+.+ ..+.+..|+...... -
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r--------~~a~eqL--~~~~~~~gl~~~~~~------~ 169 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYR--------IAAVEQL--KTYAELLQAPLEVCY------T 169 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSS--------TTHHHHH--HHHHTTTTCCCCBCS------S
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCccc--------chHHHHH--HHHHHhcCCCeEecC------C
Confidence 47899999999999999999999998777 89998887631 1222222 222333444322110 0
Q ss_pred hhhHHHHHHHHHhccCCCCEEEEeCCCcccHHhH
Q 026486 82 EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTH 115 (238)
Q Consensus 82 ~~~~s~~la~~l~~~~~p~~lilDEPt~LD~~~~ 115 (238)
...++.++++ +. +++++|+|+|+. |+...
T Consensus 170 ~~~l~~al~~--~~--~~dlvIiDT~G~-~~~~~ 198 (296)
T 2px0_A 170 KEEFQQAKEL--FS--EYDHVFVDTAGR-NFKDP 198 (296)
T ss_dssp HHHHHHHHHH--GG--GSSEEEEECCCC-CTTSH
T ss_pred HHHHHHHHHH--hc--CCCEEEEeCCCC-ChhhH
Confidence 1223344553 36 899999996654 44433
No 125
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.76 E-value=5.1e-08 Score=80.91 Aligned_cols=40 Identities=10% Similarity=0.037 Sum_probs=29.2
Q ss_pred CCCEEEEeCCCc-c--cHHhHHHHHHHHHHHHHhCCCeEEEEE
Q 026486 98 DDDYLVFDCPGQ-I--ELFTHVPVLRNFVDHLKSRNFNVCAVY 137 (238)
Q Consensus 98 ~p~~lilDEPt~-L--D~~~~~~~~~~ll~~l~~~~~tvi~v~ 137 (238)
+|+++++|+|+. . |....++.+..+.+.+++.|.++++++
T Consensus 128 ~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~ 170 (247)
T 2dr3_A 128 NAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVS 170 (247)
T ss_dssp TCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEe
Confidence 899999999998 5 555555666455555556788888773
No 126
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.76 E-value=1.9e-09 Score=99.70 Aligned_cols=38 Identities=21% Similarity=0.186 Sum_probs=35.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCC
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA 41 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~ 41 (238)
+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 31 ~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~ 68 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEA 68 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSC
T ss_pred eEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcc
Confidence 68999999999999999999999999999999997653
No 127
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=98.72 E-value=1.4e-08 Score=79.68 Aligned_cols=66 Identities=11% Similarity=0.072 Sum_probs=49.4
Q ss_pred HhhhhhHH--HH------HHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccchhH
Q 026486 79 EHLEDNLD--DW------LAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTK 149 (238)
Q Consensus 79 ~~~~~~~s--~~------la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~tvi~v~l~d~~~~~d~~~ 149 (238)
..+++|++ ++ +|++++. +|+++++||||+ ||+.++..+. ++++++.+.|.++++++ |.. +...
T Consensus 56 ~~LSgGe~qrv~lA~~Lalaral~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~~~tiiivs----H~~-~~~~ 127 (148)
T 1f2t_B 56 TFLSGGERIALGLAFRLAMSLYLAG--EISLLILDEPTPYLDEERRRKLI-TIMERYLKKIPQVILVS----HDE-ELKD 127 (148)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHS--SCSEEEEESCSCTTCHHHHHHHH-HHHHHTGGGSSEEEEEE----SCG-GGGG
T ss_pred hHCCHHHHHHHHHHhhhHHHHHHcC--CCCEEEEECCCccCCHHHHHHHH-HHHHHHHccCCEEEEEE----ChH-HHHH
Confidence 34566654 43 3488888 999999999999 9999999998 88998876678887774 655 3334
Q ss_pred HHh
Q 026486 150 FIS 152 (238)
Q Consensus 150 ~~~ 152 (238)
+++
T Consensus 128 ~~d 130 (148)
T 1f2t_B 128 AAD 130 (148)
T ss_dssp GCS
T ss_pred hCC
Confidence 433
No 128
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.70 E-value=1.5e-07 Score=85.96 Aligned_cols=151 Identities=18% Similarity=0.163 Sum_probs=83.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCCCCCCCCCCCChhhhhhHHHHHHHcCCCCCCchhhhHHhhh
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~~~ 82 (238)
.+++++||+||||||++..|++++.+.+++|.+.+.|+... ...+. ...+-+..++.-..... . ....
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~--------~a~eq--L~~~~~~~gv~~~~~~~-~-~dp~ 165 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRP--------AAYDQ--LLQLGNQIGVQVYGEPN-N-QNPI 165 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCH--------HHHHH--HHHHHHTTTCCEECCTT-C-SCHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccch--------hHHHH--HHHHHHhcCCceeeccc-c-CCHH
Confidence 57899999999999999999999999999999998875321 01111 22233334442111000 0 0000
Q ss_pred hhHHHHHHHHHhccCCCCEEEEeCCCc----ccHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccchhHHHhhhHHHH
Q 026486 83 DNLDDWLAEELDNYLDDDYLVFDCPGQ----IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASL 158 (238)
Q Consensus 83 ~~~s~~la~~l~~~~~p~~lilDEPt~----LD~~~~~~~~~~ll~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~ 158 (238)
.-...+++.+... +++++|+|+|+. .|.....++. .+.+.+ +. ..+++| +|++.-.+....+.
T Consensus 166 ~i~~~al~~a~~~--~~DvvIIDTaGr~~~~~d~~lm~el~-~i~~~~-~p-d~vlLV--lDa~~gq~a~~~a~------ 232 (433)
T 3kl4_A 166 EIAKKGVDIFVKN--KMDIIIVDTAGRHGYGEETKLLEEMK-EMYDVL-KP-DDVILV--IDASIGQKAYDLAS------ 232 (433)
T ss_dssp HHHHHHHHHTTTT--TCSEEEEEECCCSSSCCTTHHHHHHH-HHHHHH-CC-SEEEEE--EEGGGGGGGHHHHH------
T ss_pred HHHHHHHHHHHhc--CCCEEEEECCCCccccCCHHHHHHHH-HHHHhh-CC-cceEEE--EeCccchHHHHHHH------
Confidence 0011334444445 899999999995 4555544444 444444 22 233333 56665433332221
Q ss_pred HHHHh-hcCCeeeeecccccccc
Q 026486 159 SAMVQ-LELPHVNILSKMDLVTN 180 (238)
Q Consensus 159 ~~~~~-~~~p~~~vlsk~dll~~ 180 (238)
.+. .-.+..-|+||.|.-.+
T Consensus 233 --~f~~~~~~~gVIlTKlD~~a~ 253 (433)
T 3kl4_A 233 --RFHQASPIGSVIITKMDGTAK 253 (433)
T ss_dssp --HHHHHCSSEEEEEECGGGCSC
T ss_pred --HHhcccCCcEEEEeccccccc
Confidence 111 12345667888886543
No 129
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.70 E-value=2.9e-09 Score=105.22 Aligned_cols=114 Identities=14% Similarity=0.100 Sum_probs=77.5
Q ss_pred HHHHhCCcCCCceEEEeeecCCC-------------CCCCCCC-CCC-h----hhhhhHHHHHHHcCCCCCCchhhhHHh
Q 026486 20 SSLYRHCETVRRTMHIVNLDPAA-------------ENFDYPV-AMD-I----RELISLEDVMEELGLGPNGGLIYCMEH 80 (238)
Q Consensus 20 ~~l~g~l~~~~G~i~i~~~d~~~-------------~~~~~~~-~~~-i----~~~i~~~~~l~~~~l~~~~~~~~~~~~ 80 (238)
.|..+-++|..|.|.++|.++.. +++.+.. ... . .+.-...+.+..+|++....... ...
T Consensus 386 ~C~g~rl~~~~~~V~i~G~~i~~~~~~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~vgL~~l~l~r~-~~~ 464 (916)
T 3pih_A 386 VCGGRRLNREALSVKINGLNIHEFTELSISEELEFLKNLNLTEREREIVGELLKEIEKRLEFLVDVGLEYLTLSRS-ATT 464 (916)
T ss_dssp TTCSCCBCTTGGGEEETTEEHHHHHHSBHHHHHHHHHSCCCCTTTTTTHHHHHHHHHHHHHHHHTTTCTTCBTTSB-GGG
T ss_pred hcccccCChHhcCcEECCccHHHhhhCCHHHHHHHHHhccCcHHHHHHHHhhHHHHHHHHHHHHHcCCccccccCC-ccc
Confidence 34455678899999999987532 1111111 011 1 11112456777888875321111 245
Q ss_pred hhhhHH--HHHHHHHhccCCCC--EEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEE
Q 026486 81 LEDNLD--DWLAEELDNYLDDD--YLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVY 137 (238)
Q Consensus 81 ~~~~~s--~~la~~l~~~~~p~--~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~tvi~v~ 137 (238)
++++.+ ++||++|+. +|+ ++||||||+ ||+.....++ ++++++++.|.|+|+|.
T Consensus 465 LSGGe~QRv~LAraL~~--~p~~~lllLDEPT~gLD~~~~~~l~-~~L~~L~~~G~TvivVt 523 (916)
T 3pih_A 465 LSGGESQRIRLATQIGS--GLTGVIYVLDEPTIGLHPRDTERLI-KTLKKLRDLGNTVIVVE 523 (916)
T ss_dssp CCHHHHHHHHHHHHHHT--TCCSCEEEEECTTTTCCGGGHHHHH-HHHHHTTTTTCEEEEEC
T ss_pred CCHHHHHHHHHHHHHhh--CCCCcEEEEECCccCCCHHHHHHHH-HHHHHHHhcCCEEEEEe
Confidence 666543 999999998 776 999999999 9999999999 99999987899998883
No 130
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.70 E-value=9.3e-09 Score=82.90 Aligned_cols=37 Identities=24% Similarity=0.400 Sum_probs=31.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcC-----------CCceEEEeeec
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCET-----------VRRTMHIVNLD 39 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~-----------~~G~i~i~~~d 39 (238)
+.++|+|+||||||||++.++|...+ ..|++.++|.+
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~ 77 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKT 77 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEE
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEE
Confidence 67899999999999999999998765 46778777643
No 131
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.65 E-value=1.3e-08 Score=88.71 Aligned_cols=37 Identities=22% Similarity=0.235 Sum_probs=33.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCc--CCCceEEE---eeec
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCE--TVRRTMHI---VNLD 39 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~--~~~G~i~i---~~~d 39 (238)
.+++|+||||||||||+++|+|++. |++|+|.+ +|..
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~ 122 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFL 122 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCcc
Confidence 6899999999999999999999998 99999999 5544
No 132
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.64 E-value=1.7e-08 Score=80.90 Aligned_cols=35 Identities=31% Similarity=0.314 Sum_probs=31.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeec
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD 39 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d 39 (238)
-+++|+|||||||||++++|+|. +..|.|.+++.+
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~ 44 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDD 44 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTH
T ss_pred eEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccc
Confidence 57899999999999999999998 678999998755
No 133
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.63 E-value=1.3e-08 Score=89.98 Aligned_cols=40 Identities=23% Similarity=0.314 Sum_probs=37.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA 42 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~ 42 (238)
.+++|+||||||||||+++++|+++|++|+|.+.+.|+..
T Consensus 56 ~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~ 95 (337)
T 2qm8_A 56 IRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSS 95 (337)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcc
Confidence 5799999999999999999999999999999999998854
No 134
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.62 E-value=1e-07 Score=84.77 Aligned_cols=117 Identities=13% Similarity=0.166 Sum_probs=64.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCCCCCCCCCCCChhhhhhHHHHHHHcCCCCCCchhhhHHhhh
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~~~ 82 (238)
-++.|.||||||||||+..++......+|.+.+...+.. +. . ...+.+|+....-.... ..-.
T Consensus 62 ~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~-----~~------~-----~~a~~lG~~~~~l~i~~-~~~~ 124 (349)
T 2zr9_A 62 RVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHA-----LD------P-----EYAKKLGVDTDSLLVSQ-PDTG 124 (349)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC-----CC------H-----HHHHHTTCCGGGCEEEC-CSSH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCC-----cC------H-----HHHHHcCCCHHHeEEec-CCCH
Confidence 368899999999999998888766666677776654321 10 0 01334444322100000 0001
Q ss_pred hhHHHHHHHHHhccCCCCEEEEeCCCc-c----------cHH--hHHHHHHHHHHHH----HhCCCeEEEEE
Q 026486 83 DNLDDWLAEELDNYLDDDYLVFDCPGQ-I----------ELF--THVPVLRNFVDHL----KSRNFNVCAVY 137 (238)
Q Consensus 83 ~~~s~~la~~l~~~~~p~~lilDEPt~-L----------D~~--~~~~~~~~ll~~l----~~~~~tvi~v~ 137 (238)
... ..+++++....+|+++|+|+|++ + |.. .+...+.+.+++| ++.+.++++++
T Consensus 125 e~~-l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~in 195 (349)
T 2zr9_A 125 EQA-LEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFIN 195 (349)
T ss_dssp HHH-HHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred HHH-HHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEe
Confidence 122 45666665422699999999998 5 210 1111222444444 45688887774
No 135
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.62 E-value=1.6e-09 Score=90.87 Aligned_cols=37 Identities=22% Similarity=0.219 Sum_probs=28.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecC
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~ 40 (238)
+++|+||||||||||+++|+|++.|++|+|.++|.+.
T Consensus 29 ~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~ 65 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTE 65 (227)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHHHSCCTTTC-------
T ss_pred EEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEc
Confidence 3578999999999999999999999999999988765
No 136
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.60 E-value=1.4e-08 Score=81.78 Aligned_cols=30 Identities=27% Similarity=0.414 Sum_probs=25.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceE
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTM 33 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i 33 (238)
+++|+|||||||||++++|+|++++..|.+
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~ 32 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEYPDSFGFS 32 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHCGGGEECC
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCccceEE
Confidence 589999999999999999999997554443
No 137
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=98.59 E-value=6.6e-09 Score=83.42 Aligned_cols=39 Identities=15% Similarity=0.172 Sum_probs=31.3
Q ss_pred CCeeEEEEcCCCCcHHHHHHHHHhCCcCC---CceEEEeeec
Q 026486 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETV---RRTMHIVNLD 39 (238)
Q Consensus 1 ~~~~v~IiGpnGSGKSTLl~~l~g~l~~~---~G~i~i~~~d 39 (238)
|.-+++|+|+||||||||++.|.|++++. .|.|.++|.+
T Consensus 1 m~~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~ 42 (171)
T 2f1r_A 1 MSLILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHG 42 (171)
T ss_dssp --CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC----
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcc
Confidence 55679999999999999999999999998 7999988765
No 138
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.58 E-value=1.5e-08 Score=83.15 Aligned_cols=38 Identities=21% Similarity=0.218 Sum_probs=32.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcC---CCceEEEeeecC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCET---VRRTMHIVNLDP 40 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~---~~G~i~i~~~d~ 40 (238)
.+++|+||||||||||+++|+|++++ ..|.|.++|...
T Consensus 23 ~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~ 63 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHL 63 (208)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcC
Confidence 57999999999999999999999986 467777666543
No 139
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.57 E-value=2.6e-08 Score=90.63 Aligned_cols=137 Identities=12% Similarity=0.111 Sum_probs=73.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCC-----------cCCCceEEEee-ecCC-CCCCCCCC----CCChh-hhhh----HHH
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHC-----------ETVRRTMHIVN-LDPA-AENFDYPV----AMDIR-ELIS----LED 61 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l-----------~~~~G~i~i~~-~d~~-~~~~~~~~----~~~i~-~~i~----~~~ 61 (238)
.++|+|+||||||||++++++.. .|..|.+.+.+ .... .+..++.. ...+. .... ++.
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~~ 238 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRV 238 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSE
T ss_pred EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHHHHHHh
Confidence 58999999999999999999983 34445444432 1000 01111100 00010 0000 111
Q ss_pred HHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEEe
Q 026486 62 VMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYL 138 (238)
Q Consensus 62 ~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~tvi~v~l 138 (238)
++..+++. .. ..+.++..++ ..+++++.. .|.++++ + +|+... ..+..+.+.+.+.+.+++.++
T Consensus 239 lL~vvDls--~~---~~~~ls~g~~el~~la~aL~~--~P~ILVl----NKlDl~~~-~~~~~l~~~l~~~g~~vi~iS- 305 (416)
T 1udx_A 239 LLYVLDAA--DE---PLKTLETLRKEVGAYDPALLR--RPSLVAL----NKVDLLEE-EAVKALADALAREGLAVLPVS- 305 (416)
T ss_dssp EEEEEETT--SC---HHHHHHHHHHHHHHHCHHHHH--SCEEEEE----ECCTTSCH-HHHHHHHHHHHTTTSCEEECC-
T ss_pred hhEEeCCc--cC---CHHHHHHHHHHHHHHhHHhhc--CCEEEEE----ECCChhhH-HHHHHHHHHHHhcCCeEEEEE-
Confidence 12223333 11 1222333222 677788888 9999999 6 999877 445355555555677776554
Q ss_pred cccccccchhHHHhhhH
Q 026486 139 LDSQFITDVTKFISGCM 155 (238)
Q Consensus 139 ~d~~~~~d~~~~~~~~l 155 (238)
++.-......+..+.
T Consensus 306 --A~~g~gi~eL~~~i~ 320 (416)
T 1udx_A 306 --ALTGAGLPALKEALH 320 (416)
T ss_dssp --TTTCTTHHHHHHHHH
T ss_pred --CCCccCHHHHHHHHH
Confidence 555555555555443
No 140
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.56 E-value=3.2e-08 Score=90.06 Aligned_cols=37 Identities=32% Similarity=0.344 Sum_probs=34.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecC
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~ 40 (238)
+++|+||||||||||++++.|++++.+|+|.+.+.++
T Consensus 169 ii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~i 205 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPI 205 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSC
T ss_pred eEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccc
Confidence 5899999999999999999999999999999998654
No 141
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.56 E-value=3.1e-08 Score=86.12 Aligned_cols=38 Identities=13% Similarity=0.093 Sum_probs=26.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEE---eeecC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI---VNLDP 40 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i---~~~d~ 40 (238)
-+++++||||||||||+++|+|+.+|+.|+|.+ .|.+.
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~ 210 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHT 210 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTCCCC-------------C
T ss_pred CeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCc
Confidence 468999999999999999999999999999998 77654
No 142
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.54 E-value=1.4e-06 Score=75.77 Aligned_cols=39 Identities=23% Similarity=0.347 Sum_probs=35.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA 41 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~ 41 (238)
.+++++|++|+||||++..+++.+.+.+++|.+.+.|+.
T Consensus 99 ~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~ 137 (297)
T 1j8m_F 99 YVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVY 137 (297)
T ss_dssp EEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 478899999999999999999999999999999998864
No 143
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.53 E-value=4.9e-08 Score=85.91 Aligned_cols=39 Identities=21% Similarity=0.220 Sum_probs=34.2
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCCc--CCCceEEEeeecC
Q 026486 2 GYAQLVIGPAGSGKSTYCSSLYRHCE--TVRRTMHIVNLDP 40 (238)
Q Consensus 2 ~~~v~IiGpnGSGKSTLl~~l~g~l~--~~~G~i~i~~~d~ 40 (238)
+++++|+|||||||||++++|++++. +.+|.+.+.+.|.
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~ 132 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDG 132 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecc
Confidence 47999999999999999999999987 5678888877664
No 144
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.51 E-value=4.7e-08 Score=79.73 Aligned_cols=38 Identities=18% Similarity=0.226 Sum_probs=35.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~ 40 (238)
.+++|+|+|||||||+++.|++.+++.+|.+.+.+.|.
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~ 60 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDD 60 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCc
Confidence 68999999999999999999999998899999888774
No 145
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.51 E-value=3.3e-08 Score=80.69 Aligned_cols=25 Identities=32% Similarity=0.599 Sum_probs=23.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCc
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCE 27 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~ 27 (238)
-.++|+||||||||||+++|+|+++
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 4689999999999999999999875
No 146
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.50 E-value=3.9e-07 Score=80.45 Aligned_cols=116 Identities=12% Similarity=0.093 Sum_probs=64.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCC-ceEEEeeecCCCCCCCCCCCCChhhhhhHHHHHHHcCCCCCCchhhhHHhhh
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVR-RTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~-G~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~~~ 82 (238)
.++|.||+|+||||+++.+++.+.+.. ..+...+-.. ..+..+ .+..+++.++........ ......
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~---------~~~~~~--~~~~l~~~l~~~~~~~~~-~~~~~~ 113 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFI---------YRNFTA--IIGEIARSLNIPFPRRGL-SRDEFL 113 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTT---------CCSHHH--HHHHHHHHTTCCCCSSCC-CHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCcc---------CCCHHH--HHHHHHHHhCccCCCCCC-CHHHHH
Confidence 688999999999999999999887652 2333322110 011122 134455555543211000 011111
Q ss_pred hhHHHHHHHHHhccCCCCEEEEeCCCcccHHhHHHHHHHHHHHHHh---CCCeEEEE
Q 026486 83 DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKS---RNFNVCAV 136 (238)
Q Consensus 83 ~~~s~~la~~l~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~---~~~tvi~v 136 (238)
..+...+....+|.++++||+..+|......+. .++..+.. .+.++|++
T Consensus 114 ----~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~-~~~~~~~~~~~~~~~iI~~ 165 (389)
T 1fnn_A 114 ----ALLVEHLRERDLYMFLVLDDAFNLAPDILSTFI-RLGQEADKLGAFRIALVIV 165 (389)
T ss_dssp ----HHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHH-HHTTCHHHHSSCCEEEEEE
T ss_pred ----HHHHHHHhhcCCeEEEEEECccccchHHHHHHH-HHHHhCCCCCcCCEEEEEE
Confidence 222222222226889999999999877776666 65555543 35555544
No 147
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.47 E-value=7.6e-08 Score=77.89 Aligned_cols=33 Identities=18% Similarity=0.348 Sum_probs=27.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeec
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD 39 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d 39 (238)
-+++|+|||||||||++++|+|+++ .+.+.+.+
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~ 40 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKALA----EIKISISH 40 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCE
T ss_pred cEEEEECcCCCCHHHHHHHHHhhCC----CeEEecee
Confidence 4789999999999999999999964 46665543
No 148
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.46 E-value=9.6e-08 Score=89.03 Aligned_cols=37 Identities=19% Similarity=0.359 Sum_probs=33.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeec
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD 39 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d 39 (238)
.+++|+|||||||||++++++|+++|+.|.|.+.|.+
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~ 297 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTR 297 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcc
Confidence 4689999999999999999999999999999998754
No 149
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.46 E-value=2.2e-07 Score=81.59 Aligned_cols=39 Identities=18% Similarity=0.250 Sum_probs=36.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA 41 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~ 41 (238)
.+++|+|+|||||||++..|++++.+.+|+|.+.+.|+.
T Consensus 106 ~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~ 144 (320)
T 1zu4_A 106 NIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTF 144 (320)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 478999999999999999999999999999999998863
No 150
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=98.46 E-value=5.9e-08 Score=85.00 Aligned_cols=39 Identities=18% Similarity=0.168 Sum_probs=35.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCC--------cCCCceEEEeeecCC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHC--------ETVRRTMHIVNLDPA 41 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l--------~~~~G~i~i~~~d~~ 41 (238)
-+++|+|+||||||||++.|.|.. .++.|+|.++|.++.
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~ 51 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIG 51 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEEC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHh
Confidence 368999999999999999999997 789999999998764
No 151
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.45 E-value=9.8e-07 Score=78.27 Aligned_cols=31 Identities=26% Similarity=0.229 Sum_probs=26.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHh--CCcCCCceEE
Q 026486 4 AQLVIGPAGSGKSTYCSSLYR--HCETVRRTMH 34 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g--~l~~~~G~i~ 34 (238)
.++|+|++|||||||++.+.| +++...|.++
T Consensus 36 ~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT 68 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVT 68 (360)
T ss_dssp EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCcCCCCCCccc
Confidence 578999999999999999999 6666666543
No 152
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.44 E-value=7.6e-07 Score=79.35 Aligned_cols=89 Identities=18% Similarity=0.154 Sum_probs=53.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCCCCCCCCCCCChhhhhhHHHHHHHcCCCCCCchhhhHHhhh
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~~~ 82 (238)
-++.|.||||||||||+..++....+.+|.+.+....... + . ...+++|+.+..-.... ....
T Consensus 62 ~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~---------~--~-----~ra~rlgv~~~~l~i~~-~~~~ 124 (356)
T 3hr8_A 62 RIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHAL---------D--P-----VYAKNLGVDLKSLLISQ-PDHG 124 (356)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC---------C--H-----HHHHHHTCCGGGCEEEC-CSSH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc---------c--h-----HHHHHcCCchhhhhhhh-ccCH
Confidence 3688999999999999999999988888887665422111 0 0 03444555432111110 0011
Q ss_pred hhHHHHHHHHHhccCCCCEEEEeCCCc
Q 026486 83 DNLDDWLAEELDNYLDDDYLVFDCPGQ 109 (238)
Q Consensus 83 ~~~s~~la~~l~~~~~p~~lilDEPt~ 109 (238)
... .++++.+.....|+++++|+-+.
T Consensus 125 e~~-l~~~~~l~~~~~~dlvVIDSi~~ 150 (356)
T 3hr8_A 125 EQA-LEIVDELVRSGVVDLIVVDSVAA 150 (356)
T ss_dssp HHH-HHHHHHHHHTSCCSEEEEECTTT
T ss_pred HHH-HHHHHHHhhhcCCCeEEehHhhh
Confidence 112 44455554322799999998776
No 153
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=98.43 E-value=5.5e-06 Score=68.85 Aligned_cols=27 Identities=22% Similarity=0.295 Sum_probs=23.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETV 29 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~ 29 (238)
+-++|+|++|+|||||++.+.|.....
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~~~~~ 56 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGRKVFH 56 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTSCCSC
T ss_pred eEEEEECCCCCCHHHHHHHHcCCCcCc
Confidence 568999999999999999999865443
No 154
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.42 E-value=1.1e-05 Score=73.73 Aligned_cols=39 Identities=28% Similarity=0.315 Sum_probs=34.5
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecC
Q 026486 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (238)
Q Consensus 2 ~~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~ 40 (238)
+.+++++|++||||||++..|+.++...+.+|.+...|+
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~ 138 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDT 138 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCC
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 368899999999999999999999988777898887775
No 155
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.42 E-value=1.3e-07 Score=82.29 Aligned_cols=37 Identities=24% Similarity=0.312 Sum_probs=29.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEE---eeecC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI---VNLDP 40 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i---~~~d~ 40 (238)
.+++++||||||||||+++|. ..+|..|+|.+ .|.+.
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~ 205 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHT 205 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------C
T ss_pred cEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCc
Confidence 468999999999999999999 99999999999 77654
No 156
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.38 E-value=1.4e-07 Score=75.64 Aligned_cols=38 Identities=13% Similarity=0.237 Sum_probs=30.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcC-CCceEEEeeecC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCET-VRRTMHIVNLDP 40 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~-~~G~i~i~~~d~ 40 (238)
-+++|+||||||||||++.|.+.+++ ..|.|......|
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~ 44 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPP 44 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCC
Confidence 47899999999999999999998864 556666555444
No 157
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.37 E-value=1.7e-07 Score=76.17 Aligned_cols=34 Identities=21% Similarity=0.157 Sum_probs=29.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~ 40 (238)
.+++|+|||||||||+++.|++.+ |.+.+++.+.
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~ 63 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAF 63 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGG
T ss_pred cEEEEECCCCCCHHHHHHHHHHhh----CCeEEccccc
Confidence 478999999999999999999987 8888887553
No 158
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.37 E-value=2e-07 Score=83.17 Aligned_cols=36 Identities=22% Similarity=0.335 Sum_probs=27.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCc-CCCceEEEe-eec
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCE-TVRRTMHIV-NLD 39 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~-~~~G~i~i~-~~d 39 (238)
+++|+||||||||||+++|+|..+ +..|+|.+. |.+
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g 254 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLG 254 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSSCCCCC---------
T ss_pred EEEEECCCCccHHHHHHHHhccccccccCCccccCCCC
Confidence 689999999999999999999999 999999886 543
No 159
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.36 E-value=1.2e-07 Score=78.85 Aligned_cols=26 Identities=23% Similarity=0.447 Sum_probs=16.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHH-hCCcC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLY-RHCET 28 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~-g~l~~ 28 (238)
-+++|+|||||||||++++|+ |++++
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC----C
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 478999999999999999999 99854
No 160
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=98.36 E-value=5.9e-08 Score=84.16 Aligned_cols=28 Identities=32% Similarity=0.421 Sum_probs=25.5
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCCcCC
Q 026486 2 GYAQLVIGPAGSGKSTYCSSLYRHCETV 29 (238)
Q Consensus 2 ~~~v~IiGpnGSGKSTLl~~l~g~l~~~ 29 (238)
+.+++|.||+|||||||++.|.+++.+.
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~~l~~~ 58 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYNHLMEK 58 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 4789999999999999999999999764
No 161
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=98.35 E-value=1.2e-05 Score=73.27 Aligned_cols=39 Identities=26% Similarity=0.274 Sum_probs=35.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA 41 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~ 41 (238)
.+++++|++||||||++..|++++.+.+++|.+.+.|+.
T Consensus 99 ~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~ 137 (425)
T 2ffh_A 99 NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQ 137 (425)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeecccc
Confidence 578899999999999999999999999999999988763
No 162
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=98.34 E-value=6.1e-07 Score=76.42 Aligned_cols=25 Identities=20% Similarity=0.175 Sum_probs=22.5
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCC
Q 026486 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (238)
Q Consensus 2 ~~~v~IiGpnGSGKSTLl~~l~g~l 26 (238)
.+-++++|++|||||||++.++|..
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCC
Confidence 3779999999999999999999864
No 163
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.33 E-value=5.6e-08 Score=82.27 Aligned_cols=32 Identities=28% Similarity=0.351 Sum_probs=30.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHH---hCCcCCCceEE
Q 026486 3 YAQLVIGPAGSGKSTYCSSLY---RHCETVRRTMH 34 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~---g~l~~~~G~i~ 34 (238)
.+++|+|||||||||+++.|+ |+..+++|.++
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~ 62 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIY 62 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCcee
Confidence 579999999999999999999 99999999887
No 164
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=98.33 E-value=2.4e-05 Score=61.77 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=20.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~ 25 (238)
+-++|+|+.|+|||||++.+.+-
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 56899999999999999999875
No 165
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.31 E-value=3.1e-07 Score=74.28 Aligned_cols=29 Identities=24% Similarity=0.427 Sum_probs=25.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCc
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRR 31 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G 31 (238)
.+++|+|||||||||+++.|++.+.|+.|
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 57899999999999999999999866555
No 166
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.30 E-value=9.9e-08 Score=83.44 Aligned_cols=37 Identities=14% Similarity=0.162 Sum_probs=20.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEE---eeec
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI---VNLD 39 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i---~~~d 39 (238)
-+++|+||||||||||+++|.|..++..|+|.+ .|.+
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~ 213 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKH 213 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC------------------
T ss_pred CEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcc
Confidence 368999999999999999999999999999987 5544
No 167
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.30 E-value=2.8e-07 Score=72.58 Aligned_cols=27 Identities=30% Similarity=0.454 Sum_probs=24.1
Q ss_pred CCeeEEEEcCCCCcHHHHHHHHHhCCc
Q 026486 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE 27 (238)
Q Consensus 1 ~~~~v~IiGpnGSGKSTLl~~l~g~l~ 27 (238)
|+..++|+|||||||||+++.|++.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 356899999999999999999999864
No 168
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.30 E-value=1.9e-07 Score=75.85 Aligned_cols=37 Identities=24% Similarity=0.240 Sum_probs=31.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceE--EEeeecC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTM--HIVNLDP 40 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i--~i~~~d~ 40 (238)
.+++|+|||||||||+++.|++.+. ..|.+ ++++.+.
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNV 64 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchh
Confidence 5789999999999999999999987 67887 7776544
No 169
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.29 E-value=6.1e-06 Score=71.66 Aligned_cols=98 Identities=11% Similarity=0.139 Sum_probs=58.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCCCCCCCCCCCChhhhhhHHHHHHHcCCCCCCchhhhHHhhhh
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLED 83 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~~~~ 83 (238)
.+.|.||+|+|||||++.+++.+...+..+...+ ..+. ..++...+.- .
T Consensus 39 ~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~---------------~~~~--~~~~~~~~~~--------------~ 87 (324)
T 1l8q_A 39 PIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSS---------------ADDF--AQAMVEHLKK--------------G 87 (324)
T ss_dssp SEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEE---------------HHHH--HHHHHHHHHH--------------T
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE---------------HHHH--HHHHHHHHHc--------------C
Confidence 4789999999999999999998765444444332 1111 1111111100 0
Q ss_pred hHHHHHHHHHhccCCCCEEEEeCCCcccH--HhHHHHHHHHHHHHHhCCCeEEEEE
Q 026486 84 NLDDWLAEELDNYLDDDYLVFDCPGQIEL--FTHVPVLRNFVDHLKSRNFNVCAVY 137 (238)
Q Consensus 84 ~~s~~la~~l~~~~~p~~lilDEPt~LD~--~~~~~~~~~ll~~l~~~~~tvi~v~ 137 (238)
.. ..+... .. ++++|++||+..+.. ..+..+. .++..+.+.+..++++.
T Consensus 88 ~~-~~~~~~-~~--~~~vL~iDEi~~l~~~~~~~~~l~-~~l~~~~~~~~~iii~~ 138 (324)
T 1l8q_A 88 TI-NEFRNM-YK--SVDLLLLDDVQFLSGKERTQIEFF-HIFNTLYLLEKQIILAS 138 (324)
T ss_dssp CH-HHHHHH-HH--TCSEEEEECGGGGTTCHHHHHHHH-HHHHHHHHTTCEEEEEE
T ss_pred cH-HHHHHH-hc--CCCEEEEcCcccccCChHHHHHHH-HHHHHHHHCCCeEEEEe
Confidence 01 111112 23 789999999987544 6666777 77877766666665553
No 170
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.28 E-value=3.5e-07 Score=81.19 Aligned_cols=40 Identities=23% Similarity=0.472 Sum_probs=36.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA 42 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~ 42 (238)
..++|+|++|||||||++.+.|.+.+.+|+|.+.+.||..
T Consensus 75 ~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~ 114 (349)
T 2www_A 75 FRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSS 114 (349)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC--
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCC
Confidence 6899999999999999999999999999999999998864
No 171
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.28 E-value=4.5e-07 Score=73.67 Aligned_cols=32 Identities=25% Similarity=0.245 Sum_probs=26.7
Q ss_pred CCeeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEee
Q 026486 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN 37 (238)
Q Consensus 1 ~~~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~ 37 (238)
|+++++|+|||||||||+++.|+++ |...++.
T Consensus 1 m~~~i~l~G~~GsGKST~~~~La~l-----g~~~id~ 32 (206)
T 1jjv_A 1 MTYIVGLTGGIGSGKTTIANLFTDL-----GVPLVDA 32 (206)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHTT-----TCCEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHC-----CCcccch
Confidence 6689999999999999999999993 5555543
No 172
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.28 E-value=3.7e-07 Score=75.98 Aligned_cols=34 Identities=24% Similarity=0.461 Sum_probs=30.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~ 40 (238)
.+++|.|+|||||||+++.|+|+ +|+|.+.+.+.
T Consensus 21 ~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~ 54 (230)
T 2vp4_A 21 FTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPV 54 (230)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTH
T ss_pred eEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCH
Confidence 57899999999999999999998 78899887653
No 173
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.28 E-value=2.4e-06 Score=78.07 Aligned_cols=98 Identities=15% Similarity=0.213 Sum_probs=58.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCC--CceEEEeeecCCCCCCCCCCCCChhhhhhHHHHHHHcCCCCCCchhhhHHhh
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETV--RRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~--~G~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~~ 81 (238)
.+.|.||+|+|||||++++++.+... +..+.+.+ ..+. ..++.+.+.-.
T Consensus 132 ~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~---------------~~~~--~~~~~~~~~~~------------ 182 (440)
T 2z4s_A 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT---------------SEKF--LNDLVDSMKEG------------ 182 (440)
T ss_dssp CEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE---------------HHHH--HHHHHHHHHTT------------
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee---------------HHHH--HHHHHHHHHcc------------
Confidence 47899999999999999999976432 22222221 1111 11222111100
Q ss_pred hhhHHHHHHHHHhccCCCCEEEEeCCCc-ccH-HhHHHHHHHHHHHHHhCCCeEEEE
Q 026486 82 EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IEL-FTHVPVLRNFVDHLKSRNFNVCAV 136 (238)
Q Consensus 82 ~~~~s~~la~~l~~~~~p~~lilDEPt~-LD~-~~~~~~~~~ll~~l~~~~~tvi~v 136 (238)
.. ..+...+.. ++++|++||+.. .+. ..+..++ ..+..+.+.|..++++
T Consensus 183 --~~-~~~~~~~~~--~~~vL~IDEi~~l~~~~~~q~~l~-~~l~~l~~~~~~iIit 233 (440)
T 2z4s_A 183 --KL-NEFREKYRK--KVDILLIDDVQFLIGKTGVQTELF-HTFNELHDSGKQIVIC 233 (440)
T ss_dssp --CH-HHHHHHHTT--TCSEEEEECGGGGSSCHHHHHHHH-HHHHHHHTTTCEEEEE
T ss_pred --cH-HHHHHHhcC--CCCEEEEeCcccccCChHHHHHHH-HHHHHHHHCCCeEEEE
Confidence 11 223334444 789999999998 443 5666777 7888876667776655
No 174
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=98.25 E-value=4.5e-06 Score=66.32 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=21.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l 26 (238)
+-++|+|++|||||||++.+.+-.
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 568999999999999999999853
No 175
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.24 E-value=3e-06 Score=77.59 Aligned_cols=131 Identities=12% Similarity=0.036 Sum_probs=69.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCc-eEEEeeecCCCCC---------CCCC------CCCChhhhhhHHHHHHHcC
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRR-TMHIVNLDPAAEN---------FDYP------VAMDIRELISLEDVMEELG 67 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G-~i~i~~~d~~~~~---------~~~~------~~~~i~~~i~~~~~l~~~~ 67 (238)
.+.|.|+||+|||||+..+++...+..| .|.+.+.+...+. .++. ..++..+.-.+.+.++.++
T Consensus 205 liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~~~l~~r~~~~~~~~~~~~l~~g~l~~~~~~~~~~a~~~l~ 284 (454)
T 2r6a_A 205 LIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSAQQLVMRMLCAEGNINAQNLRTGKLTPEDWGKLTMAMGSLS 284 (454)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCHHHHHHHHHHHHHTCCHHHHHTSCCCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHHcCCCHHHHhcCCCCHHHHHHHHHHHHHHh
Confidence 5789999999999999999998766444 7877765432110 1110 0112122212333444433
Q ss_pred CCCCCchhhhHHhhhhhHHHHHHHHHhccCCCCEEEEeCCCc-ccHH----hH----HHHHHHHHHHHHh-CCCeEEEEE
Q 026486 68 LGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELF----TH----VPVLRNFVDHLKS-RNFNVCAVY 137 (238)
Q Consensus 68 l~~~~~~~~~~~~~~~~~s~~la~~l~~~~~p~~lilDEPt~-LD~~----~~----~~~~~~ll~~l~~-~~~tvi~v~ 137 (238)
..+.. ...........+ ...++.+..-.+|+++++|+++. .... .+ ..+. +.++.+++ .+.++++++
T Consensus 285 ~~~l~-i~d~~~~s~~~i-~~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~-~~Lk~lAke~~i~vi~~s 361 (454)
T 2r6a_A 285 NAGIY-IDDTPSIRVSDI-RAKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEIS-RSLKALARELEVPVIALS 361 (454)
T ss_dssp SSCEE-EECCTTCCHHHH-HHHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHH-HHHHHHHHHHTCCEEEEE
T ss_pred cCCEE-EECCCCCCHHHH-HHHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHH-HHHHHHHHHhCCeEEEEe
Confidence 22210 000000011223 45566665322899999999998 4321 12 3344 44555554 488888774
No 176
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=98.24 E-value=3e-06 Score=83.86 Aligned_cols=70 Identities=13% Similarity=0.135 Sum_probs=56.3
Q ss_pred HHHHcCCCCC-CchhhhHHhhhhhHH--HHHHHHHhccCC--CCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEE
Q 026486 62 VMEELGLGPN-GGLIYCMEHLEDNLD--DWLAEELDNYLD--DDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCA 135 (238)
Q Consensus 62 ~l~~~~l~~~-~~~~~~~~~~~~~~s--~~la~~l~~~~~--p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~tvi~ 135 (238)
.+..+||+.. ... ....++++.+ +.||++|.. + |+++||||||+ ||+.....++ +++++|++.|.|||+
T Consensus 487 ~L~~vGL~~l~ldR--~~~tLSGGEkQRV~LA~aL~~--~~~~~llILDEPTagLdp~~~~~L~-~~L~~Lr~~G~TVIv 561 (972)
T 2r6f_A 487 FLQNVGLDYLTLSR--SAGTLSGGEAQRIRLATQIGS--RLTGVLYVLDEPSIGLHQRDNDRLI-ATLKSMRDLGNTLIV 561 (972)
T ss_dssp HHHHHTCTTSBSSS--BGGGCCHHHHHHHHHHHHHTT--CCCSCEEEEECTTTTCCGGGHHHHH-HHHHHHHTTTCEEEE
T ss_pred HhhhCCCCccccCC--ccccCCHHHHHHHHHHHHHhh--CCCCCEEEEeCcccCCCHHHHHHHH-HHHHHHHhCCCEEEE
Confidence 4778898743 111 2345666643 899999998 7 59999999999 9999999999 999999878999988
Q ss_pred E
Q 026486 136 V 136 (238)
Q Consensus 136 v 136 (238)
|
T Consensus 562 V 562 (972)
T 2r6f_A 562 V 562 (972)
T ss_dssp E
T ss_pred E
Confidence 8
No 177
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.23 E-value=5.4e-07 Score=71.69 Aligned_cols=29 Identities=21% Similarity=0.287 Sum_probs=25.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCce
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRT 32 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~ 32 (238)
+.+|+|||||||||++++|.+++.+..|.
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~~~~~~ 56 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLGGLSAK 56 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCCTG
T ss_pred cEEEECCCCCCHHHHHHHHHHHHcCCccc
Confidence 67899999999999999999988765543
No 178
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.23 E-value=4.1e-07 Score=76.33 Aligned_cols=25 Identities=32% Similarity=0.410 Sum_probs=23.0
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCC
Q 026486 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (238)
Q Consensus 2 ~~~v~IiGpnGSGKSTLl~~l~g~l 26 (238)
..+++|+|||||||||++++|+|++
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999999976
No 179
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=98.22 E-value=4e-06 Score=82.25 Aligned_cols=70 Identities=23% Similarity=0.197 Sum_probs=56.5
Q ss_pred HHHHcCCCCC-CchhhhHHhhhhhH--HHHHHHHHhccCCC--CEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEE
Q 026486 62 VMEELGLGPN-GGLIYCMEHLEDNL--DDWLAEELDNYLDD--DYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCA 135 (238)
Q Consensus 62 ~l~~~~l~~~-~~~~~~~~~~~~~~--s~~la~~l~~~~~p--~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~tvi~ 135 (238)
.+..+|++.. ... ....++++. ++.||++|.. +| .++||||||+ ||+.....++ +++++|++.|.|+|+
T Consensus 362 ~L~~vGL~~l~l~r--~~~tLSGGe~QRV~LA~aL~~--~p~~~llILDEPT~~Ld~~~~~~L~-~~l~~L~~~G~TVIv 436 (842)
T 2vf7_A 362 VLLHLGLGYLGLDR--STPTLSPGELQRLRLATQLYS--NLFGVVYVLDEPSAGLHPADTEALL-SALENLKRGGNSLFV 436 (842)
T ss_dssp HHHHTTCTTSBTTC--BGGGSCHHHHHHHHHHHHTTT--CCCSCEEEEECTTTTCCGGGHHHHH-HHHHHHHTTTCEEEE
T ss_pred HHHhCCCCcCCccC--CcCcCCHHHHHHHHHHHHHhh--CCCCeEEEeeCccccCCHHHHHHHH-HHHHHHHHcCCEEEE
Confidence 5778898753 111 124566654 3899999999 88 5999999999 9999999999 999999888999988
Q ss_pred E
Q 026486 136 V 136 (238)
Q Consensus 136 v 136 (238)
|
T Consensus 437 V 437 (842)
T 2vf7_A 437 V 437 (842)
T ss_dssp E
T ss_pred E
Confidence 8
No 180
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.21 E-value=7.6e-07 Score=72.90 Aligned_cols=38 Identities=24% Similarity=0.435 Sum_probs=29.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcC-CCceEEEeeecC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCET-VRRTMHIVNLDP 40 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~-~~G~i~i~~~d~ 40 (238)
-+++|+|||||||||+++.|++.+++ ..+.+......+
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~ 47 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLP 47 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCC
T ss_pred cEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccC
Confidence 46899999999999999999999876 444444444433
No 181
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.20 E-value=3.3e-06 Score=83.82 Aligned_cols=71 Identities=15% Similarity=0.173 Sum_probs=55.5
Q ss_pred HHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHHhccCC--CCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 026486 62 VMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLD--DDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (238)
Q Consensus 62 ~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~--p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~tvi~v 136 (238)
.+..+||+... .......++++.+ +.||++|.. + |+++||||||+ ||+.....++ +++++|++.|.|||+|
T Consensus 504 ~L~~vGL~~l~-l~r~~~tLSGGEkQRV~LA~aL~~--~~~~~llILDEPTagLdp~~~~~L~-~~L~~Lr~~G~TVIvV 579 (993)
T 2ygr_A 504 FLLDVGLEYLS-LSRAAATLSGGEAQRIRLATQIGS--GLVGVLYVLDEPSIGLHQRDNRRLI-ETLTRLRDLGNTLIVV 579 (993)
T ss_dssp HHHHHTGGGSC-TTCBGGGCCHHHHHHHHHHHHHTT--CCCSCEEEEECTTTTCCHHHHHHHH-HHHHHHHHTTCEEEEE
T ss_pred HHhhCCCCccc-cCCCcccCCHHHHHHHHHHHHHhh--CCCCcEEEEeCcccCCCHHHHHHHH-HHHHHHHHcCCEEEEE
Confidence 46777876321 1112345666543 899999998 7 58999999999 9999999999 9999998889999888
No 182
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=98.19 E-value=7.5e-05 Score=60.58 Aligned_cols=23 Identities=26% Similarity=0.255 Sum_probs=20.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~ 25 (238)
.-++|+|+.|+|||||++.+.|-
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTC
T ss_pred CEEEEEcCCCCCHHHHHHHHhCC
Confidence 46899999999999999999874
No 183
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.19 E-value=8.4e-07 Score=70.08 Aligned_cols=33 Identities=21% Similarity=0.230 Sum_probs=28.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeec
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD 39 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d 39 (238)
.+++|+|||||||||+++.|++.+ |.+.+++-+
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~ 41 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDF 41 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGG
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCcc
Confidence 578999999999999999999975 777777644
No 184
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.19 E-value=3.4e-06 Score=69.08 Aligned_cols=89 Identities=11% Similarity=0.155 Sum_probs=54.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCCCCCCCCCCCChhhhhhHHHHHHHcCCCCCCchhhhHHhhh
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~~~ 82 (238)
-.+.|.||+|+||||+++.++..+......+.+.+... ..+.+ . +.+
T Consensus 53 ~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~------------~~~~~--------------~------~~~- 99 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGI------------HASIS--------------T------ALL- 99 (242)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG------------GGGSC--------------G------GGG-
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH------------HHHHH--------------H------HHH-
Confidence 35789999999999999999987765444444433210 00000 0 000
Q ss_pred hhHHHHHHHHHhccCCCCEEEEeCCCcccHHh--HHHHHHHHHHHHHhCCCe-EEEE
Q 026486 83 DNLDDWLAEELDNYLDDDYLVFDCPGQIELFT--HVPVLRNFVDHLKSRNFN-VCAV 136 (238)
Q Consensus 83 ~~~s~~la~~l~~~~~p~~lilDEPt~LD~~~--~~~~~~~ll~~l~~~~~t-vi~v 136 (238)
. ... ++.++++||...++... ...+. .+++.+.+.+.. +|++
T Consensus 100 ~---------~~~--~~~vliiDe~~~~~~~~~~~~~l~-~~l~~~~~~~~~~ii~~ 144 (242)
T 3bos_A 100 E---------GLE--QFDLICIDDVDAVAGHPLWEEAIF-DLYNRVAEQKRGSLIVS 144 (242)
T ss_dssp T---------TGG--GSSEEEEETGGGGTTCHHHHHHHH-HHHHHHHHHCSCEEEEE
T ss_pred H---------hcc--CCCEEEEeccccccCCHHHHHHHH-HHHHHHHHcCCCeEEEE
Confidence 0 013 78999999988755433 55556 777776555544 5554
No 185
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.17 E-value=3e-07 Score=75.63 Aligned_cols=34 Identities=21% Similarity=0.305 Sum_probs=28.3
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCC---cCCCceEEE
Q 026486 2 GYAQLVIGPAGSGKSTYCSSLYRHC---ETVRRTMHI 35 (238)
Q Consensus 2 ~~~v~IiGpnGSGKSTLl~~l~g~l---~~~~G~i~i 35 (238)
+..++|+||+||||||+++.|++.+ .++.|.+..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence 3689999999999999999999876 566666654
No 186
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.16 E-value=8.9e-07 Score=71.34 Aligned_cols=36 Identities=25% Similarity=0.420 Sum_probs=28.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCc-----CC------CceEEEeee
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCE-----TV------RRTMHIVNL 38 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~-----~~------~G~i~i~~~ 38 (238)
+-++|+|+||||||||++.++|... |+ .|.+.++|.
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~ 52 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGK 52 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTE
T ss_pred EEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCE
Confidence 6789999999999999999999853 32 456666654
No 187
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.16 E-value=1.7e-05 Score=64.31 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=21.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l 26 (238)
+-++++|++|+|||||++.+.+-.
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 568999999999999999999854
No 188
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=98.15 E-value=4.1e-05 Score=58.54 Aligned_cols=22 Identities=32% Similarity=0.591 Sum_probs=20.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHh
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYR 24 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g 24 (238)
+-++++|++|+|||||++.+.+
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 7789999999999999999986
No 189
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.15 E-value=7.4e-06 Score=74.75 Aligned_cols=39 Identities=26% Similarity=0.306 Sum_probs=34.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA 41 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~ 41 (238)
.+++++|++|+||||++..|++.+...+.+|.+...|+.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~ 138 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTY 138 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecccc
Confidence 478999999999999999999998877778999988874
No 190
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=98.14 E-value=3.3e-06 Score=67.70 Aligned_cols=56 Identities=11% Similarity=0.113 Sum_probs=42.9
Q ss_pred HhhhhhHH--HHHHHHHhc--cCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 026486 79 EHLEDNLD--DWLAEELDN--YLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (238)
Q Consensus 79 ~~~~~~~s--~~la~~l~~--~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~tvi~v 136 (238)
..+++|.+ ++||++++. +.+|+++|||||++ ||+.+...+. ++++++.+ +.++|++
T Consensus 63 ~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~-~~l~~~~~-~~~~ivi 123 (173)
T 3kta_B 63 EAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVA-DLIKESSK-ESQFIVI 123 (173)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHH-HHHHHHTT-TSEEEEE
T ss_pred ccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHH-HHHHHhcc-CCEEEEE
Confidence 45666654 788888874 11579999999999 9999999999 88888854 4456555
No 191
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=98.13 E-value=0.00014 Score=57.43 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=20.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~ 25 (238)
+-++|+|++|+|||||++.+.+-
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999874
No 192
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.13 E-value=1.4e-06 Score=74.57 Aligned_cols=35 Identities=17% Similarity=0.339 Sum_probs=29.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecC
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~ 40 (238)
+++++||||||||||+++++|.+.+ +.+.+.|.+.
T Consensus 46 GvlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l 80 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVANESGL--NFISVKGPEL 80 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTT
T ss_pred eEEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHH
Confidence 4899999999999999999998876 6777776543
No 193
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.11 E-value=1.4e-05 Score=70.71 Aligned_cols=42 Identities=24% Similarity=0.291 Sum_probs=33.7
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCCC
Q 026486 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE 43 (238)
Q Consensus 2 ~~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~ 43 (238)
.+.++|+|++|+||||+++.+++.+...+.+|.+...||...
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~ 120 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSST 120 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCC
Confidence 368999999999999999999998877777888888887543
No 194
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.11 E-value=4e-06 Score=67.68 Aligned_cols=34 Identities=18% Similarity=0.184 Sum_probs=27.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEe
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV 36 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~ 36 (238)
-.+.|.||+|+|||||+++++......++.+.+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~ 88 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIV 88 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 4688999999999999999999876655555443
No 195
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.10 E-value=1.1e-05 Score=75.08 Aligned_cols=38 Identities=24% Similarity=0.378 Sum_probs=32.9
Q ss_pred EEEEcCCCCcHHHHHHHHHh--CCcCCCceEEEeeecCCC
Q 026486 5 QLVIGPAGSGKSTYCSSLYR--HCETVRRTMHIVNLDPAA 42 (238)
Q Consensus 5 v~IiGpnGSGKSTLl~~l~g--~l~~~~G~i~i~~~d~~~ 42 (238)
++|.|++||||||+++.|.. +.+.+.+++.+...|+..
T Consensus 170 lLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~ 209 (512)
T 2ius_A 170 LLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKM 209 (512)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSS
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCch
Confidence 68999999999999999876 566677999999999865
No 196
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=98.06 E-value=3.2e-06 Score=72.25 Aligned_cols=24 Identities=29% Similarity=0.315 Sum_probs=22.3
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhC
Q 026486 2 GYAQLVIGPAGSGKSTYCSSLYRH 25 (238)
Q Consensus 2 ~~~v~IiGpnGSGKSTLl~~l~g~ 25 (238)
++-++++|++|||||||++.+.|-
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTT
T ss_pred ccEEEEECCCCCCHHHHHHHHhCC
Confidence 588999999999999999999885
No 197
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=98.06 E-value=8.4e-05 Score=58.05 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=20.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~ 25 (238)
+-++|+|+.|+|||||++.+.+-
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 67899999999999999999864
No 198
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.05 E-value=2.9e-06 Score=76.49 Aligned_cols=51 Identities=8% Similarity=-0.099 Sum_probs=38.6
Q ss_pred CC--CEEEEeCCCc-ccHHhHHHHHHHHHHHH-HhCCCeEEEEEecccccccchhHHHhhhH
Q 026486 98 DD--DYLVFDCPGQ-IELFTHVPVLRNFVDHL-KSRNFNVCAVYLLDSQFITDVTKFISGCM 155 (238)
Q Consensus 98 ~p--~~lilDEPt~-LD~~~~~~~~~~ll~~l-~~~~~tvi~v~l~d~~~~~d~~~~~~~~l 155 (238)
+| ++.++|||+. .|+......+ ..++.+ .+.|.+++ +|.......+++.+.
T Consensus 139 dP~~di~ildeel~~~D~~~~~k~~-~~l~~~~~~~g~ti~------sh~~~~~~~l~~~i~ 193 (392)
T 1ni3_A 139 DPIRDLSIIVDELLIKDAEFVEKHL-EGLRKITSRGANTLE------MKAKKEEQAIIEKVY 193 (392)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHTTCCSSCSSS------HHHHHHHHHHHHHHH
T ss_pred CcchhhhhchhhhHHHHHHHHHHHH-HHHHHHHHhcCCccc------cccHHHHHHHHHHHH
Confidence 67 8899999998 9999988888 777776 55565541 577777777777666
No 199
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=98.05 E-value=7.9e-05 Score=57.09 Aligned_cols=22 Identities=32% Similarity=0.616 Sum_probs=20.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHh
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYR 24 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g 24 (238)
+-++++|++|+|||||++.+.+
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 6789999999999999999986
No 200
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=98.05 E-value=6e-05 Score=58.59 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=21.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~ 25 (238)
+-++|+|+.|+|||||++.+.+-
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 56899999999999999999875
No 201
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=98.04 E-value=1.7e-05 Score=60.68 Aligned_cols=23 Identities=22% Similarity=0.436 Sum_probs=20.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~ 25 (238)
+-++++|++|+|||||++.+.+-
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45799999999999999999974
No 202
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=98.03 E-value=9.7e-05 Score=56.45 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=21.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~ 25 (238)
+-++++|+.|+|||||++.+.+-
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 67899999999999999999864
No 203
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.02 E-value=2.1e-06 Score=70.27 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=22.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCc
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCE 27 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~ 27 (238)
-.++|+||||||||||++.|.+.++
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3678999999999999999999875
No 204
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.02 E-value=2.8e-06 Score=75.00 Aligned_cols=40 Identities=23% Similarity=0.321 Sum_probs=36.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA 42 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~ 42 (238)
.+++|+|+||+||||+++.|++.+.+.+|++.+.+.|+..
T Consensus 57 ~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~ 96 (341)
T 2p67_A 57 LRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSS 96 (341)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCc
Confidence 5789999999999999999999999999999999998854
No 205
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.00 E-value=2e-06 Score=80.82 Aligned_cols=35 Identities=20% Similarity=0.321 Sum_probs=30.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCc-eEE-Eee
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRR-TMH-IVN 37 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G-~i~-i~~ 37 (238)
.+++|+|+|||||||++++|++.+.+.+| ++. ++|
T Consensus 370 ~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDg 406 (552)
T 3cr8_A 370 FTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDG 406 (552)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESS
T ss_pred eEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECC
Confidence 57899999999999999999999999886 786 554
No 206
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.98 E-value=4.2e-06 Score=67.09 Aligned_cols=40 Identities=15% Similarity=0.012 Sum_probs=31.5
Q ss_pred CCeeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecC
Q 026486 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (238)
Q Consensus 1 ~~~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~ 40 (238)
|..+++|+|++|||||||++.+.+.+++.+.++.....++
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~ 44 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTH 44 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCC
Confidence 4467899999999999999999998876655565555443
No 207
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=97.98 E-value=2.4e-05 Score=74.09 Aligned_cols=35 Identities=23% Similarity=0.292 Sum_probs=29.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCC-ceEEEeee
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVR-RTMHIVNL 38 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~-G~i~i~~~ 38 (238)
.++|+||||+||||++++|++++++.. |.+.+.+.
T Consensus 62 ~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~ 97 (604)
T 3k1j_A 62 HVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPN 97 (604)
T ss_dssp CEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECC
T ss_pred EEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCC
Confidence 578999999999999999999998887 56666543
No 208
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=97.97 E-value=5.3e-06 Score=77.13 Aligned_cols=56 Identities=18% Similarity=0.069 Sum_probs=47.9
Q ss_pred hhhHH--HHHHHHHhccCCC--CEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEEeccccccc
Q 026486 82 EDNLD--DWLAEELDNYLDD--DYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFIT 145 (238)
Q Consensus 82 ~~~~s--~~la~~l~~~~~p--~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~tvi~v~l~d~~~~~ 145 (238)
++|.. ++||++++. +| +++|||||++ ||+.+...++ ++++++.+ |.+||+| +|...
T Consensus 399 SgG~~qrv~la~~l~~--~~~~~~lilDEp~~gld~~~~~~i~-~~l~~~~~-~~~vi~i----tH~~~ 459 (517)
T 4ad8_A 399 SGGELSRVMLAVSTVL--GADTPSVVFDEVDAGIGGAAAIAVA-EQLSRLAD-TRQVLVV----THLAQ 459 (517)
T ss_dssp CSSHHHHHHHHHHHHH--CCCSSEEEECSCSSSCCTHHHHHHH-HHHHHHHH-HSEEEEE----CCCHH
T ss_pred CHHHHHHHHHHHHHHh--CCCCCEEEEeCCcCCCCHHHHHHHH-HHHHHHhC-CCEEEEE----ecCHH
Confidence 55543 899999999 99 9999999999 9999999999 99999976 8888887 47653
No 209
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=97.97 E-value=0.00013 Score=58.10 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=20.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~ 25 (238)
+-++|+|+.|+|||||++.+.+-
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 56899999999999999999864
No 210
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=97.96 E-value=9.5e-05 Score=58.07 Aligned_cols=23 Identities=26% Similarity=0.260 Sum_probs=20.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~ 25 (238)
+-++|+|++|+|||||++.+.+-
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCc
Confidence 45899999999999999999874
No 211
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.94 E-value=7.8e-06 Score=66.35 Aligned_cols=26 Identities=27% Similarity=0.392 Sum_probs=23.6
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCCc
Q 026486 2 GYAQLVIGPAGSGKSTYCSSLYRHCE 27 (238)
Q Consensus 2 ~~~v~IiGpnGSGKSTLl~~l~g~l~ 27 (238)
+.+++|+|++||||||+++.|++.++
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 46899999999999999999999864
No 212
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.94 E-value=4.3e-06 Score=70.08 Aligned_cols=33 Identities=18% Similarity=0.344 Sum_probs=27.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeee
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL 38 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~ 38 (238)
.++|+||||||||||++++++... .|.+.+.+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~ 83 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGEAR--VPFITASGS 83 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHH
Confidence 479999999999999999999875 577776653
No 213
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.94 E-value=4.5e-06 Score=67.46 Aligned_cols=22 Identities=27% Similarity=0.261 Sum_probs=21.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHh
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYR 24 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g 24 (238)
+.++|+|+|||||||+++.|++
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 5799999999999999999999
No 214
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.93 E-value=4.3e-06 Score=66.73 Aligned_cols=36 Identities=22% Similarity=0.348 Sum_probs=30.9
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEee
Q 026486 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN 37 (238)
Q Consensus 2 ~~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~ 37 (238)
...++|+|++||||||+++.+++.+.+.++.+.+.+
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~ 48 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLD 48 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEee
Confidence 357899999999999999999999988888776543
No 215
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.92 E-value=1.9e-05 Score=67.64 Aligned_cols=98 Identities=17% Similarity=0.214 Sum_probs=57.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCCCCCCCCCCCChhhhhhHHHHHHHcCCCCCCchhhhHHhhh
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~~~ 82 (238)
-.+.+.||+|+||||+++++++.+...++.+...+..... ... ...+ .+|..+.. . ..-.
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~------~~~------~~~~---l~g~~~~~-~----~~~~ 107 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYM------EKH------AVSR---LIGAPPGY-V----GYEE 107 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCC------STT------HHHH---HHCCCTTS-T----TTTT
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeeccccc------ccc------cHHH---hcCCCCcc-c----cccc
Confidence 3689999999999999999999998888877665532111 000 1111 12222110 0 0000
Q ss_pred hhHHHHHHHHHhccCCCCEEEEeCCCcccHHhHHHHHHHHHHH
Q 026486 83 DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDH 125 (238)
Q Consensus 83 ~~~s~~la~~l~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~ 125 (238)
. ..+..++... ...++++||...+++..+..++ .++..
T Consensus 108 ~---~~~~~~~~~~-~~~vl~lDEi~~l~~~~~~~Ll-~~le~ 145 (311)
T 4fcw_A 108 G---GQLTEAVRRR-PYSVILFDAIEKAHPDVFNILL-QMLDD 145 (311)
T ss_dssp C---CHHHHHHHHC-SSEEEEEETGGGSCHHHHHHHH-HHHHH
T ss_pred c---chHHHHHHhC-CCeEEEEeChhhcCHHHHHHHH-HHHhc
Confidence 0 1223334331 4479999999889888776666 65554
No 216
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.91 E-value=5.3e-05 Score=69.92 Aligned_cols=24 Identities=25% Similarity=0.541 Sum_probs=21.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l 26 (238)
-.+.|.||+|+||||+++++++..
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 358899999999999999999954
No 217
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.91 E-value=4.4e-06 Score=67.60 Aligned_cols=25 Identities=32% Similarity=0.526 Sum_probs=22.5
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCC
Q 026486 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (238)
Q Consensus 2 ~~~v~IiGpnGSGKSTLl~~l~g~l 26 (238)
..+++|+|++||||||+++.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3478999999999999999999876
No 218
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=97.90 E-value=1.2e-05 Score=62.68 Aligned_cols=23 Identities=17% Similarity=0.443 Sum_probs=20.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~ 25 (238)
+-++|+|+.|||||||++.+.+-
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 56899999999999999999874
No 219
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.89 E-value=5.5e-06 Score=65.71 Aligned_cols=35 Identities=17% Similarity=0.147 Sum_probs=28.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCc--eEEEeee
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRR--TMHIVNL 38 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G--~i~i~~~ 38 (238)
..++|+|++||||||+++.|++.+++ .| .+.+++.
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~ 42 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGD 42 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECCh
Confidence 57889999999999999999998876 45 4445543
No 220
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.89 E-value=5.6e-06 Score=70.50 Aligned_cols=33 Identities=18% Similarity=0.344 Sum_probs=28.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeee
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL 38 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~ 38 (238)
.++|+||||||||||++++++... .|.+.+.+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~ 107 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGEAR--VPFITASGS 107 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHH
T ss_pred eEEEECCCcChHHHHHHHHHHHcC--CCEEEecHH
Confidence 479999999999999999999875 677776654
No 221
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.89 E-value=1.2e-06 Score=76.97 Aligned_cols=34 Identities=21% Similarity=0.339 Sum_probs=28.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCC----cCCCceEEEee
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHC----ETVRRTMHIVN 37 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l----~~~~G~i~i~~ 37 (238)
.+++.||||+|||||+++++|.+ .+.+|++...+
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~ 90 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ 90 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSH
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCH
Confidence 57899999999999999999988 56666655444
No 222
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=97.89 E-value=3e-05 Score=65.62 Aligned_cols=22 Identities=32% Similarity=0.484 Sum_probs=20.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHhC
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRH 25 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~ 25 (238)
-++++|++|||||||++.+.|-
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5789999999999999999886
No 223
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.88 E-value=6e-05 Score=57.87 Aligned_cols=88 Identities=19% Similarity=0.282 Sum_probs=53.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCCCCCCCCCCCChhhhhhHHHHHHHcCCCCCCchhhhHHhhhh
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLED 83 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~~~~ 83 (238)
-+.|.||+|+|||++.+.+.......++.+.++..... .. .. . .
T Consensus 26 ~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v~~~~~~~-------~~---------------------~~-------~-~ 69 (145)
T 3n70_A 26 AVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELTPD-------NA---------------------PQ-------L-N 69 (145)
T ss_dssp CEEEESSTTSSHHHHHHHHHHSSTTTTSCCEEEECCTT-------TS---------------------SC-------H-H
T ss_pred CEEEECCCCCCHHHHHHHHHHhCCccCCCEEEECCCCC-------cc---------------------hh-------h-h
Confidence 47899999999999999999886554444332221100 00 00 0 0
Q ss_pred hHHHHHHHHHhccCCCCEEEEeCCCcccHHhHHHHHHHHHHHHHhCCCeEEEEE
Q 026486 84 NLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVY 137 (238)
Q Consensus 84 ~~s~~la~~l~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~tvi~v~ 137 (238)
-.+..+ +..++++||...+++..+..+. ..+... ..+..+|+.+
T Consensus 70 ---~~~~~a-----~~g~l~ldei~~l~~~~q~~Ll-~~l~~~-~~~~~~I~~t 113 (145)
T 3n70_A 70 ---DFIALA-----QGGTLVLSHPEHLTREQQYHLV-QLQSQE-HRPFRLIGIG 113 (145)
T ss_dssp ---HHHHHH-----TTSCEEEECGGGSCHHHHHHHH-HHHHSS-SCSSCEEEEE
T ss_pred ---cHHHHc-----CCcEEEEcChHHCCHHHHHHHH-HHHhhc-CCCEEEEEEC
Confidence 111111 5679999999999988887766 555221 2345565553
No 224
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.88 E-value=8.3e-06 Score=71.43 Aligned_cols=26 Identities=15% Similarity=0.294 Sum_probs=23.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCC
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETV 29 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~ 29 (238)
.++|.||+|+|||||++.+++.+.+.
T Consensus 47 ~vli~G~~G~GKTtl~~~l~~~~~~~ 72 (386)
T 2qby_A 47 NIFIYGLTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp CEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 57899999999999999999987654
No 225
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.88 E-value=8e-06 Score=64.20 Aligned_cols=24 Identities=42% Similarity=0.540 Sum_probs=22.7
Q ss_pred CCeeEEEEcCCCCcHHHHHHHHHh
Q 026486 1 MGYAQLVIGPAGSGKSTYCSSLYR 24 (238)
Q Consensus 1 ~~~~v~IiGpnGSGKSTLl~~l~g 24 (238)
|+.+++|.|++||||||+++.|+.
T Consensus 1 M~~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 1 MKKIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEecCCCCCHHHHHHHHHh
Confidence 778899999999999999999997
No 226
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.87 E-value=0.00016 Score=67.12 Aligned_cols=38 Identities=26% Similarity=0.368 Sum_probs=31.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~ 40 (238)
.+++|+|++||||||++..|+..+...+-++.+...|+
T Consensus 102 ~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~ 139 (504)
T 2j37_W 102 NVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADT 139 (504)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccc
Confidence 47899999999999999999987765555788887776
No 227
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=97.86 E-value=9.6e-05 Score=61.97 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=21.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~ 25 (238)
+-++|+|++|+|||||++.+.|-
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCcHHHHHHHHhCC
Confidence 56899999999999999999985
No 228
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.84 E-value=5.6e-05 Score=67.21 Aligned_cols=35 Identities=20% Similarity=0.309 Sum_probs=27.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEee
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN 37 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~ 37 (238)
-++.|.||+|||||||+..++......++.+.+..
T Consensus 64 ~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid 98 (356)
T 1u94_A 64 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 98 (356)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 46889999999999999888876554555666554
No 229
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.84 E-value=0.00013 Score=64.28 Aligned_cols=23 Identities=17% Similarity=0.197 Sum_probs=20.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~ 25 (238)
-++.|.||+|||||||+..++..
T Consensus 123 ~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 123 AITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp EEEEEECCTTCTHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999988875
No 230
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.82 E-value=5.2e-06 Score=67.82 Aligned_cols=36 Identities=28% Similarity=0.329 Sum_probs=30.1
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCCcCCCc--eEEEee
Q 026486 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRR--TMHIVN 37 (238)
Q Consensus 2 ~~~v~IiGpnGSGKSTLl~~l~g~l~~~~G--~i~i~~ 37 (238)
..+++|+|++||||||+++.|++.+.+..| .+.+++
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~ 62 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDG 62 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECC
Confidence 357899999999999999999999986677 566554
No 231
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=97.81 E-value=0.00042 Score=58.90 Aligned_cols=24 Identities=21% Similarity=0.220 Sum_probs=21.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l 26 (238)
.-++|+|++|+|||||++.+.|.-
T Consensus 27 ~~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 27 PQIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred CeEEEEeCCCCCHHHHHHHHHCCC
Confidence 358999999999999999999864
No 232
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.79 E-value=3.2e-05 Score=67.80 Aligned_cols=25 Identities=28% Similarity=0.486 Sum_probs=22.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcC
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCET 28 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~ 28 (238)
.+.|.||+|+||||+++.++..+..
T Consensus 46 ~vll~G~~G~GKT~l~~~~~~~~~~ 70 (387)
T 2v1u_A 46 NALLYGLTGTGKTAVARLVLRRLEA 70 (387)
T ss_dssp CEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5789999999999999999987643
No 233
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.79 E-value=0.00011 Score=64.26 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=20.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l 26 (238)
-++.|.||+|||||||+..++...
T Consensus 108 ~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 108 TMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHhHHHHHHHHHH
Confidence 368899999999999999888653
No 234
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=97.79 E-value=3.5e-05 Score=65.08 Aligned_cols=22 Identities=41% Similarity=0.579 Sum_probs=20.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHh
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYR 24 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g 24 (238)
+-++++|+.|+|||||++.+.|
T Consensus 37 ~~I~lvG~~g~GKSSLin~l~~ 58 (262)
T 3def_A 37 MTVLVLGKGGVGKSSTVNSLIG 58 (262)
T ss_dssp EEEEEEECTTSSHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 6789999999999999999998
No 235
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.78 E-value=0.00027 Score=59.77 Aligned_cols=24 Identities=25% Similarity=0.490 Sum_probs=21.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l 26 (238)
-.+.|.||+|+||||+++++++.+
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 357899999999999999999875
No 236
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.77 E-value=1e-05 Score=73.33 Aligned_cols=55 Identities=9% Similarity=0.164 Sum_probs=43.1
Q ss_pred hhhhHH--HHHHHHHhcc--CCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 026486 81 LEDNLD--DWLAEELDNY--LDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (238)
Q Consensus 81 ~~~~~s--~~la~~l~~~--~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~tvi~v 136 (238)
+++|++ ++||++++.. .+|+++|||||++ ||+..+..+. ++++++.+.+.+++++
T Consensus 334 lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~-~~l~~~~~~~~~~ii~ 393 (430)
T 1w1w_A 334 LSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIA-AYIRRHRNPDLQFIVI 393 (430)
T ss_dssp SCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHH-HHHHHHCBTTBEEEEE
T ss_pred CCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHH-HHHHHHhcCCCEEEEE
Confidence 445543 7888888831 2799999999999 9999999999 8888886556777666
No 237
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.77 E-value=4.4e-05 Score=63.72 Aligned_cols=40 Identities=8% Similarity=-0.067 Sum_probs=30.8
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCC
Q 026486 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA 41 (238)
Q Consensus 2 ~~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~ 41 (238)
+..+.+.|+.|+||||++-.++..+...+-+|.+...|+.
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q 45 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETH 45 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCT
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCC
Confidence 4678899999999999977777666554457877777763
No 238
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.76 E-value=0.00012 Score=65.24 Aligned_cols=116 Identities=14% Similarity=0.134 Sum_probs=62.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCCCCCCCCCCCChhhhhhHHHHHHHcCCCCCCchhhhHHhhhh
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLED 83 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~~~~ 83 (238)
++.|.||+|||||||+..++......++.+.+...+... ... .++.+|+....-..... ....
T Consensus 76 li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~-----------~~~-----~a~~~g~d~~~l~i~~~-~~~e 138 (366)
T 1xp8_A 76 ITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHAL-----------DPV-----YARALGVNTDELLVSQP-DNGE 138 (366)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC-----------CHH-----HHHHTTCCGGGCEEECC-SSHH
T ss_pred EEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCCh-----------hHH-----HHHHcCCCHHHceeecC-CcHH
Confidence 578899999999999987776544445677776544211 110 23444543221000000 0011
Q ss_pred hHHHHHHHHHhccCCCCEEEEeCCCcccH----H---------hHHHHHHHHHHHHH----hCCCeEEEEE
Q 026486 84 NLDDWLAEELDNYLDDDYLVFDCPGQIEL----F---------THVPVLRNFVDHLK----SRNFNVCAVY 137 (238)
Q Consensus 84 ~~s~~la~~l~~~~~p~~lilDEPt~LD~----~---------~~~~~~~~ll~~l~----~~~~tvi~v~ 137 (238)
.. .++++.+....+++++|+|..+.+-+ . .+...+.+.+++|. +.+.++|++.
T Consensus 139 ~~-l~~l~~l~~~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~n 208 (366)
T 1xp8_A 139 QA-LEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFIN 208 (366)
T ss_dssp HH-HHHHHHHHTTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred HH-HHHHHHHHhcCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEE
Confidence 22 34445554322789999999998432 0 12122335666662 3577776663
No 239
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=97.75 E-value=0.00028 Score=62.24 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=21.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCC
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l 26 (238)
-++|+|++|+|||||++.+.|.-
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999964
No 240
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.75 E-value=1.5e-05 Score=62.03 Aligned_cols=23 Identities=35% Similarity=0.543 Sum_probs=19.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCC
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l 26 (238)
+.+|+|||||||||++.+|.-.+
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998533
No 241
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.73 E-value=6.6e-05 Score=65.25 Aligned_cols=33 Identities=15% Similarity=0.182 Sum_probs=25.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCc-CCCceEEE
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCE-TVRRTMHI 35 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~-~~~G~i~i 35 (238)
-.+.+.||+|+|||+|+++++..+. ..+.++.+
T Consensus 153 ~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~ 186 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTL 186 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEE
Confidence 3578999999999999999998765 43334443
No 242
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.72 E-value=1.7e-05 Score=62.45 Aligned_cols=27 Identities=19% Similarity=0.144 Sum_probs=23.7
Q ss_pred CCeeEEEEcCCCCcHHHHHHHHHhCCc
Q 026486 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE 27 (238)
Q Consensus 1 ~~~~v~IiGpnGSGKSTLl~~l~g~l~ 27 (238)
|..++.|+|++||||||+.+.|+..+.
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 356889999999999999999998764
No 243
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.72 E-value=1.8e-05 Score=61.70 Aligned_cols=23 Identities=26% Similarity=0.260 Sum_probs=21.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCC
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l 26 (238)
.++|+|++||||||+++.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68899999999999999998765
No 244
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.72 E-value=2.3e-05 Score=65.23 Aligned_cols=34 Identities=24% Similarity=0.326 Sum_probs=29.3
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEe
Q 026486 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV 36 (238)
Q Consensus 2 ~~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~ 36 (238)
...++|.|++||||||+++.|++.+.+ ++.+...
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~ 59 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT 59 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence 357899999999999999999999988 7777544
No 245
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.72 E-value=1.9e-05 Score=63.05 Aligned_cols=39 Identities=18% Similarity=0.074 Sum_probs=31.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA 41 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~ 41 (238)
.+++|+|++||||||++..+.+.++..+-+|.+...++.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~~ 43 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGH 43 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCCC
Confidence 578999999999999999999988766557777665553
No 246
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=97.71 E-value=6.6e-06 Score=73.34 Aligned_cols=51 Identities=12% Similarity=0.046 Sum_probs=40.1
Q ss_pred hhhhhHH--HHHHHHHh---------ccCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 026486 80 HLEDNLD--DWLAEELD---------NYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (238)
Q Consensus 80 ~~~~~~s--~~la~~l~---------~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~tvi~v 136 (238)
.+++|++ ++||++++ . +|++++||||++ ||+..+..++ +++..+. .++|++
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~--~p~iLLLDEp~s~LD~~~~~~l~-~~l~~~~---qt~i~~ 327 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFG--EDPVLLLDDFTAELDPHRRQYLL-DLAASVP---QAIVTG 327 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHS--SCCEEEECCGGGCCCHHHHHHHH-HHHHHSS---EEEEEE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccC--CCCEEEEeCccccCCHHHHHHHH-HHHHhcC---cEEEEE
Confidence 4555554 88999999 7 999999999999 9999998888 7776653 445444
No 247
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=97.70 E-value=2.9e-05 Score=69.17 Aligned_cols=21 Identities=24% Similarity=0.439 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHh
Q 026486 4 AQLVIGPAGSGKSTYCSSLYR 24 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g 24 (238)
+++|+|||||||||++++|.+
T Consensus 28 ~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 28 VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCChhHHHHHHHH
Confidence 689999999999999999997
No 248
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.70 E-value=6e-05 Score=68.30 Aligned_cols=27 Identities=30% Similarity=0.352 Sum_probs=23.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETV 29 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~ 29 (238)
-+++|+|||||||||++++|++++.+.
T Consensus 27 ~~~~i~G~nG~GKstll~ai~~~~~~~ 53 (430)
T 1w1w_A 27 NFTSIIGPNGSGKSNMMDAISFVLGVR 53 (430)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHTTC-
T ss_pred CEEEEECCCCCCHHHHHHHHHhhhccc
Confidence 368999999999999999999987654
No 249
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.66 E-value=0.0004 Score=59.13 Aligned_cols=24 Identities=29% Similarity=0.671 Sum_probs=21.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l 26 (238)
-.+.|.||+|+||||+++++++..
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CeEEEECcCCCCHHHHHHHHHHHh
Confidence 368899999999999999999965
No 250
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.66 E-value=1.7e-05 Score=70.14 Aligned_cols=24 Identities=25% Similarity=0.249 Sum_probs=21.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l 26 (238)
+.++++|++|+|||||++.++|..
T Consensus 168 ~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 168 PTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp CEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 578999999999999999999864
No 251
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.65 E-value=2.4e-05 Score=60.72 Aligned_cols=20 Identities=40% Similarity=0.590 Sum_probs=18.7
Q ss_pred eeEEEEcCCCCcHHHHHHHH
Q 026486 3 YAQLVIGPAGSGKSTYCSSL 22 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l 22 (238)
.+++|.||+||||||+++.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999999
No 252
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=97.65 E-value=4.5e-05 Score=67.44 Aligned_cols=118 Identities=18% Similarity=0.242 Sum_probs=57.7
Q ss_pred CCEEEEeCCCcccHHh-HHHHHHHHHHHHHhCCCeEEEEEecccccc--cchhHHHhhhHHHHHHHH--hhcCCeeeeec
Q 026486 99 DDYLVFDCPGQIELFT-HVPVLRNFVDHLKSRNFNVCAVYLLDSQFI--TDVTKFISGCMASLSAMV--QLELPHVNILS 173 (238)
Q Consensus 99 p~~lilDEPt~LD~~~-~~~~~~~ll~~l~~~~~tvi~v~l~d~~~~--~d~~~~~~~~l~~~~~~~--~~~~p~~~vls 173 (238)
.++.|.|.|+..+... .+.+...+++.+.+.. ++++++|+... .++..-+..+.-.+...- ..+.|.+-|+|
T Consensus 206 ~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d---~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~N 282 (342)
T 1lnz_A 206 RSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR---VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVAN 282 (342)
T ss_dssp CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC---EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEE
T ss_pred ceEEEecCCCCcccccccchhHHHHHHHHHhcc---EEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEE
Confidence 4689999999644211 1122224455554322 24445666543 233332222222121111 24789999999
Q ss_pred ccccccchhhhhhh---cccCHHHHHHHhhhccchhHHHHHHHHHHHHhhC
Q 026486 174 KMDLVTNKKEIEDY---LNPESQFLLSELNQHMAPQFAKLNKSLIELVDEY 221 (238)
Q Consensus 174 k~dll~~~~~l~~~---~~~~~~~l~~~l~~~~~~~~~~l~~~i~~~i~~~ 221 (238)
|+|+......++.+ +......+ ......+....+|-..+.+.+...
T Consensus 283 K~Dl~~~~e~~~~l~~~l~~~~~v~--~iSA~tg~gi~eL~~~l~~~l~~~ 331 (342)
T 1lnz_A 283 KMDMPEAAENLEAFKEKLTDDYPVF--PISAVTREGLRELLFEVANQLENT 331 (342)
T ss_dssp CTTSTTHHHHHHHHHHHCCSCCCBC--CCSSCCSSTTHHHHHHHHHHHTSC
T ss_pred CccCCCCHHHHHHHHHHhhcCCCEE--EEECCCCcCHHHHHHHHHHHHhhC
Confidence 99998643222211 11000000 011223445677888888887654
No 253
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.64 E-value=0.00087 Score=61.01 Aligned_cols=39 Identities=23% Similarity=0.319 Sum_probs=33.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCC-CceEEEeeecCC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETV-RRTMHIVNLDPA 41 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~-~G~i~i~~~d~~ 41 (238)
.+++++|++|+||||++..|+..+... +.+|.+...|+.
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~ 140 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVY 140 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 578889999999999999999888776 678998888864
No 254
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.63 E-value=2.7e-05 Score=62.92 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=21.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l 26 (238)
-.++|+||+||||||+.+.|++.+
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 368999999999999999999876
No 255
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.63 E-value=3.9e-05 Score=59.61 Aligned_cols=25 Identities=32% Similarity=0.414 Sum_probs=22.4
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCC
Q 026486 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (238)
Q Consensus 2 ~~~v~IiGpnGSGKSTLl~~l~g~l 26 (238)
.+.++|+|++|+|||||++.+.|..
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCS
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCC
Confidence 3779999999999999999999864
No 256
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.62 E-value=0.00013 Score=71.30 Aligned_cols=25 Identities=24% Similarity=0.489 Sum_probs=22.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcC
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCET 28 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~ 28 (238)
.++|+|||||||||+++++++.+..
T Consensus 240 ~vLL~Gp~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 240 GILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp EEEECSCTTSSHHHHHHHHHHTTTC
T ss_pred eEEEECcCCCCHHHHHHHHHHHcCC
Confidence 5899999999999999999998743
No 257
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.62 E-value=2.5e-05 Score=63.40 Aligned_cols=25 Identities=28% Similarity=0.442 Sum_probs=22.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCc
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCE 27 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~ 27 (238)
..++|+||+||||||+++.|...++
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCc
Confidence 4689999999999999999998764
No 258
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.61 E-value=4.2e-05 Score=69.58 Aligned_cols=36 Identities=19% Similarity=0.263 Sum_probs=28.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCc------------CCCceEEEeee
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCE------------TVRRTMHIVNL 38 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~------------~~~G~i~i~~~ 38 (238)
+-++|+|+||+|||||++.+.|... +..|.+.++|.
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~ 228 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR 228 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE
Confidence 5689999999999999999999854 45566666664
No 259
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.60 E-value=2.9e-05 Score=61.24 Aligned_cols=23 Identities=39% Similarity=0.492 Sum_probs=21.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCC
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l 26 (238)
.++|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 68899999999999999999765
No 260
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.59 E-value=3.6e-05 Score=61.89 Aligned_cols=26 Identities=27% Similarity=0.286 Sum_probs=23.5
Q ss_pred CCeeEEEEcCCCCcHHHHHHHHHhCC
Q 026486 1 MGYAQLVIGPAGSGKSTYCSSLYRHC 26 (238)
Q Consensus 1 ~~~~v~IiGpnGSGKSTLl~~l~g~l 26 (238)
|+.+++|.|++||||||+.+.|++.+
T Consensus 1 m~~~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 1 MRGIVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 66689999999999999999999865
No 261
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.58 E-value=1.1e-05 Score=65.49 Aligned_cols=32 Identities=22% Similarity=0.280 Sum_probs=26.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEE
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI 35 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i 35 (238)
+++|.|++||||||+++.|...+...+.++.+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~ 33 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVAT 33 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 57899999999999999999988765555543
No 262
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.58 E-value=3.8e-05 Score=60.87 Aligned_cols=25 Identities=40% Similarity=0.659 Sum_probs=21.9
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCC
Q 026486 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (238)
Q Consensus 2 ~~~v~IiGpnGSGKSTLl~~l~g~l 26 (238)
...++++|++||||||+++.|+..+
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4678999999999999999998643
No 263
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.58 E-value=3.6e-05 Score=60.14 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=23.0
Q ss_pred CCeeEEEEcCCCCcHHHHHHHHHhCC
Q 026486 1 MGYAQLVIGPAGSGKSTYCSSLYRHC 26 (238)
Q Consensus 1 ~~~~v~IiGpnGSGKSTLl~~l~g~l 26 (238)
|+..++|.|++||||||+.+.|+..+
T Consensus 1 m~~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 1 MTEPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCCCEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 55679999999999999999998754
No 264
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.57 E-value=6.9e-05 Score=57.45 Aligned_cols=39 Identities=10% Similarity=0.007 Sum_probs=28.4
Q ss_pred CCCEEEEeCCCcccHHhHHHHHHHHHHHHHhCCCeEEEEE
Q 026486 98 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVY 137 (238)
Q Consensus 98 ~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~tvi~v~ 137 (238)
+..++++||...++...+..+. +++.+....+..+|+.+
T Consensus 75 ~~~~l~lDei~~l~~~~q~~Ll-~~l~~~~~~~~~iI~~t 113 (143)
T 3co5_A 75 EGGVLYVGDIAQYSRNIQTGIT-FIIGKAERCRVRVIASC 113 (143)
T ss_dssp TTSEEEEEECTTCCHHHHHHHH-HHHHHHTTTTCEEEEEE
T ss_pred CCCeEEEeChHHCCHHHHHHHH-HHHHhCCCCCEEEEEec
Confidence 5679999999999888887777 66666433455666654
No 265
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.57 E-value=4.3e-05 Score=62.40 Aligned_cols=23 Identities=35% Similarity=0.478 Sum_probs=21.7
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHh
Q 026486 2 GYAQLVIGPAGSGKSTYCSSLYR 24 (238)
Q Consensus 2 ~~~v~IiGpnGSGKSTLl~~l~g 24 (238)
+++++|.|++||||||+++.|++
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999999998
No 266
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.56 E-value=4.4e-05 Score=60.44 Aligned_cols=26 Identities=35% Similarity=0.603 Sum_probs=22.9
Q ss_pred CCeeEEEEcCCCCcHHHHHHHHHhCC
Q 026486 1 MGYAQLVIGPAGSGKSTYCSSLYRHC 26 (238)
Q Consensus 1 ~~~~v~IiGpnGSGKSTLl~~l~g~l 26 (238)
|+.+++|.|++||||||+++.|+..+
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998754
No 267
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.56 E-value=1.7e-05 Score=66.53 Aligned_cols=25 Identities=40% Similarity=0.521 Sum_probs=22.3
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCC
Q 026486 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (238)
Q Consensus 2 ~~~v~IiGpnGSGKSTLl~~l~g~l 26 (238)
+++++|.||+||||||+++.|+..+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999654
No 268
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.56 E-value=5.2e-05 Score=60.72 Aligned_cols=24 Identities=33% Similarity=0.292 Sum_probs=22.1
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhC
Q 026486 2 GYAQLVIGPAGSGKSTYCSSLYRH 25 (238)
Q Consensus 2 ~~~v~IiGpnGSGKSTLl~~l~g~ 25 (238)
+.+++|+|++||||||+++.|+..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 468999999999999999999985
No 269
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.54 E-value=0.00065 Score=56.40 Aligned_cols=23 Identities=26% Similarity=0.611 Sum_probs=20.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCC
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l 26 (238)
.+.|.||+|+||||++++++..+
T Consensus 41 ~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 41 GALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999865
No 270
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.54 E-value=4e-05 Score=60.70 Aligned_cols=26 Identities=27% Similarity=0.491 Sum_probs=21.5
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCCc
Q 026486 2 GYAQLVIGPAGSGKSTYCSSLYRHCE 27 (238)
Q Consensus 2 ~~~v~IiGpnGSGKSTLl~~l~g~l~ 27 (238)
.+-++|+|++|+|||||++.+++...
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~ 27 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKK 27 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC--
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCC
Confidence 35689999999999999999998643
No 271
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.53 E-value=4e-05 Score=60.76 Aligned_cols=26 Identities=35% Similarity=0.447 Sum_probs=22.4
Q ss_pred CCeeEEEEcCCCCcHHHHHHHHHhCC
Q 026486 1 MGYAQLVIGPAGSGKSTYCSSLYRHC 26 (238)
Q Consensus 1 ~~~~v~IiGpnGSGKSTLl~~l~g~l 26 (238)
|..+++|+|++||||||+.+.|+..+
T Consensus 1 M~~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 1 MAPKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp -CCSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 66679999999999999999998754
No 272
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.53 E-value=3.8e-05 Score=64.60 Aligned_cols=34 Identities=24% Similarity=0.240 Sum_probs=27.1
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEee
Q 026486 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN 37 (238)
Q Consensus 2 ~~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~ 37 (238)
+..++++|++||||||+.+.|++.+. .+.+.+++
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~ 65 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDG 65 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEec
Confidence 46789999999999999999999764 24455554
No 273
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.52 E-value=4.2e-05 Score=68.53 Aligned_cols=30 Identities=30% Similarity=0.381 Sum_probs=25.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEE
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI 35 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i 35 (238)
-+++|+||||||||||+++++|.. +|.+..
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~ 199 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLELC---GGKALN 199 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH---CCEEEC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc---CCcEEE
Confidence 468999999999999999999963 576654
No 274
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.51 E-value=5.3e-05 Score=67.51 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCc
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCE 27 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~ 27 (238)
.++|+|++|||||||++.++|...
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~ 204 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQ 204 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc
Confidence 489999999999999999999754
No 275
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.50 E-value=5.8e-05 Score=59.84 Aligned_cols=25 Identities=28% Similarity=0.585 Sum_probs=22.2
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCC
Q 026486 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (238)
Q Consensus 2 ~~~v~IiGpnGSGKSTLl~~l~g~l 26 (238)
+..++|.|++||||||+++.|+..+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4789999999999999999998754
No 276
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.50 E-value=5.9e-05 Score=59.90 Aligned_cols=25 Identities=24% Similarity=0.274 Sum_probs=22.3
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCC
Q 026486 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (238)
Q Consensus 2 ~~~v~IiGpnGSGKSTLl~~l~g~l 26 (238)
+..++|+|++||||||+++.|+..+
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4678999999999999999998754
No 277
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.49 E-value=5.6e-05 Score=59.51 Aligned_cols=23 Identities=35% Similarity=0.470 Sum_probs=21.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~ 25 (238)
+.++++|++|+|||||++.++|-
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 67899999999999999999974
No 278
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.48 E-value=6e-05 Score=59.62 Aligned_cols=25 Identities=20% Similarity=0.231 Sum_probs=22.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCc
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCE 27 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~ 27 (238)
..++|.|++||||||+++.|+..+.
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5789999999999999999998654
No 279
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.48 E-value=5.6e-05 Score=61.66 Aligned_cols=23 Identities=35% Similarity=0.543 Sum_probs=19.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCC
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l 26 (238)
+.+|+|||||||||++.+|.-.+
T Consensus 25 ~~~I~G~NgsGKStil~ai~~~l 47 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 57899999999999999987544
No 280
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.47 E-value=0.00012 Score=63.49 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=21.2
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCc
Q 026486 5 QLVIGPAGSGKSTYCSSLYRHCE 27 (238)
Q Consensus 5 v~IiGpnGSGKSTLl~~l~g~l~ 27 (238)
+.+.||+|+||||+++.+++.+.
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999999864
No 281
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.46 E-value=5.1e-05 Score=60.58 Aligned_cols=25 Identities=36% Similarity=0.569 Sum_probs=22.4
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCC
Q 026486 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (238)
Q Consensus 2 ~~~v~IiGpnGSGKSTLl~~l~g~l 26 (238)
...++|+|++||||||+++.|+..+
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4679999999999999999998865
No 282
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.45 E-value=7.6e-05 Score=59.02 Aligned_cols=26 Identities=27% Similarity=0.313 Sum_probs=22.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCET 28 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~ 28 (238)
..++|.|++||||||+++.|+..+..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 35789999999999999999987653
No 283
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.45 E-value=0.00028 Score=62.28 Aligned_cols=36 Identities=11% Similarity=0.173 Sum_probs=28.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeec
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD 39 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d 39 (238)
.+.|.|++|+|||||+..++......++.|.+...+
T Consensus 48 LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlE 83 (338)
T 4a1f_A 48 LVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLE 83 (338)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 578999999999999998887765566677666543
No 284
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.44 E-value=6.6e-05 Score=63.32 Aligned_cols=24 Identities=25% Similarity=0.465 Sum_probs=21.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l 26 (238)
-.++|+||+||||||+.+.|++.+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 368899999999999999999865
No 285
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.44 E-value=7.3e-05 Score=59.19 Aligned_cols=25 Identities=28% Similarity=0.306 Sum_probs=21.8
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCC
Q 026486 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (238)
Q Consensus 2 ~~~v~IiGpnGSGKSTLl~~l~g~l 26 (238)
+..++++|++||||||+.+.|+..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3468899999999999999998765
No 286
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.44 E-value=7e-05 Score=59.86 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=21.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCc
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCE 27 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~ 27 (238)
.++|.|++||||||+++.|+..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 578999999999999999999764
No 287
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=97.43 E-value=0.001 Score=64.01 Aligned_cols=25 Identities=32% Similarity=0.464 Sum_probs=22.3
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCC
Q 026486 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (238)
Q Consensus 2 ~~~v~IiGpnGSGKSTLl~~l~g~l 26 (238)
.+-++|+|+.|+|||||++.|.|--
T Consensus 69 ~~~V~VvG~~naGKSSLlNaLlg~~ 93 (695)
T 2j69_A 69 VFRLLVLGDMKRGKSTFLNALIGEN 93 (695)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3678999999999999999999853
No 288
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.43 E-value=9.9e-05 Score=59.35 Aligned_cols=31 Identities=29% Similarity=0.223 Sum_probs=25.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEE
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMH 34 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~ 34 (238)
..++|.|++||||||+++.|+..+... |.+.
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~-g~~~ 35 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELK-RDVY 35 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTT-SCEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhc-CCEE
Confidence 678999999999999999999977653 3443
No 289
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.43 E-value=6.7e-05 Score=63.47 Aligned_cols=25 Identities=32% Similarity=0.464 Sum_probs=22.4
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCC
Q 026486 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (238)
Q Consensus 2 ~~~v~IiGpnGSGKSTLl~~l~g~l 26 (238)
.-.++|+|++||||||+++.|++.+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 3578999999999999999999965
No 290
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.42 E-value=7.3e-05 Score=67.40 Aligned_cols=35 Identities=17% Similarity=0.250 Sum_probs=27.0
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhC-----------CcCCCceEEEe
Q 026486 2 GYAQLVIGPAGSGKSTYCSSLYRH-----------CETVRRTMHIV 36 (238)
Q Consensus 2 ~~~v~IiGpnGSGKSTLl~~l~g~-----------l~~~~G~i~i~ 36 (238)
...++|+|+||+|||||++.++|. ..|..|.+.+.
T Consensus 22 ~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~ 67 (396)
T 2ohf_A 22 SLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVP 67 (396)
T ss_dssp CCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEEC
Confidence 356899999999999999999997 45556666554
No 291
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.42 E-value=8.5e-05 Score=58.31 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=21.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l 26 (238)
+-++|+|++|+|||||++.+++..
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 568999999999999999999854
No 292
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.42 E-value=0.00016 Score=60.21 Aligned_cols=34 Identities=15% Similarity=0.225 Sum_probs=24.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEe
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV 36 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~ 36 (238)
.++.+.||.||||||++-.++.-+...+.++.+.
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~ 46 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYADVKYLVF 46 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 4678999999999997766555444444466655
No 293
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.40 E-value=4.2e-05 Score=71.64 Aligned_cols=34 Identities=18% Similarity=0.281 Sum_probs=29.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEee
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN 37 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~ 37 (238)
.++++||||+||||+++++++.+.+..|.+.+.+
T Consensus 110 ~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~ 143 (543)
T 3m6a_A 110 ILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGG 143 (543)
T ss_dssp EEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecc
Confidence 5889999999999999999999987777776554
No 294
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.39 E-value=0.0024 Score=55.52 Aligned_cols=24 Identities=29% Similarity=0.533 Sum_probs=21.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l 26 (238)
-.+.+.||+|+||||++++++...
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHT
T ss_pred ceEEEECCCCccHHHHHHHHHHHc
Confidence 368899999999999999999875
No 295
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=97.39 E-value=8.6e-05 Score=66.29 Aligned_cols=34 Identities=18% Similarity=0.183 Sum_probs=29.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEee
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN 37 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~ 37 (238)
-++|+||+||||||+++.+.+...+.++.+.+.+
T Consensus 37 ~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D 70 (392)
T 4ag6_A 37 NWTILAKPGAGKSFTAKMLLLREYMQGSRVIIID 70 (392)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEe
Confidence 4689999999999999999998888888887753
No 296
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=97.39 E-value=0.00013 Score=64.53 Aligned_cols=27 Identities=19% Similarity=0.460 Sum_probs=23.9
Q ss_pred CCeeEEEEcCCCCcHHHHHHHHHhCCc
Q 026486 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE 27 (238)
Q Consensus 1 ~~~~v~IiGpnGSGKSTLl~~l~g~l~ 27 (238)
|+.+++|+||+||||||+.+.|+..+.
T Consensus 6 m~~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 6 KPFLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCceEEEECCCcCcHHHHHHHHHHHcC
Confidence 456899999999999999999998764
No 297
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=97.37 E-value=0.0001 Score=63.00 Aligned_cols=24 Identities=42% Similarity=0.540 Sum_probs=22.5
Q ss_pred CCeeEEEEcCCCCcHHHHHHHHHh
Q 026486 1 MGYAQLVIGPAGSGKSTYCSSLYR 24 (238)
Q Consensus 1 ~~~~v~IiGpnGSGKSTLl~~l~g 24 (238)
|+..+.|+|++||||||+.+.|+.
T Consensus 1 M~~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 1 MKKIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 778899999999999999999987
No 298
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.37 E-value=0.00012 Score=61.27 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=22.9
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCCc
Q 026486 2 GYAQLVIGPAGSGKSTYCSSLYRHCE 27 (238)
Q Consensus 2 ~~~v~IiGpnGSGKSTLl~~l~g~l~ 27 (238)
+++++|.|++||||||+++.|+..+.
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 47899999999999999999988543
No 299
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.36 E-value=0.0001 Score=63.32 Aligned_cols=33 Identities=27% Similarity=0.383 Sum_probs=25.5
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEe
Q 026486 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV 36 (238)
Q Consensus 2 ~~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~ 36 (238)
+..+.|.||+||||||+++.++..++ .+.+.+.
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is 65 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVID 65 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEe
Confidence 46789999999999999999987543 2445544
No 300
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=97.36 E-value=0.00015 Score=64.64 Aligned_cols=24 Identities=33% Similarity=0.549 Sum_probs=22.8
Q ss_pred CCeeEEEEcCCCCcHHHHHHHHHh
Q 026486 1 MGYAQLVIGPAGSGKSTYCSSLYR 24 (238)
Q Consensus 1 ~~~~v~IiGpnGSGKSTLl~~l~g 24 (238)
|.+-++|+|.+|+|||||++.+++
T Consensus 1 m~~kI~IVG~pnvGKSTL~n~Lt~ 24 (363)
T 1jal_A 1 MGFKCGIVGLPNVGKSTLFNALTK 24 (363)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHC
Confidence 678899999999999999999998
No 301
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.35 E-value=0.00012 Score=70.14 Aligned_cols=31 Identities=29% Similarity=0.404 Sum_probs=26.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcC--CCceE
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCET--VRRTM 33 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~--~~G~i 33 (238)
..++|+|++|+|||||++.+.+...+ ..|+|
T Consensus 10 ~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V 42 (665)
T 2dy1_A 10 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRV 42 (665)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG
T ss_pred cEEEEECCCCChHHHHHHHHHHhcCCCCcccee
Confidence 46899999999999999999987654 55666
No 302
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.35 E-value=0.0001 Score=61.09 Aligned_cols=25 Identities=32% Similarity=0.381 Sum_probs=22.1
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCC
Q 026486 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (238)
Q Consensus 2 ~~~v~IiGpnGSGKSTLl~~l~g~l 26 (238)
..+++|+|++||||||+++.|++.+
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3679999999999999999999843
No 303
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.34 E-value=0.00024 Score=63.17 Aligned_cols=46 Identities=13% Similarity=0.174 Sum_probs=37.1
Q ss_pred HHHHHHhccCC-CCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEE
Q 026486 88 WLAEELDNYLD-DDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVY 137 (238)
Q Consensus 88 ~la~~l~~~~~-p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~tvi~v~ 137 (238)
++|+++.. + |+++|||||++ ||+..+..+. +.++++.+ +.++++++
T Consensus 296 a~a~~l~~--~~~~~lllDEp~~~LD~~~~~~l~-~~l~~~~~-~~~vi~~t 343 (371)
T 3auy_A 296 AIANALIG--NRVECIILDEPTVYLDENRRAKLA-EIFRKVKS-IPQMIIIT 343 (371)
T ss_dssp HHHHHHHS--SCCSEEEEESTTTTCCHHHHHHHH-HHHHHCCS-CSEEEEEE
T ss_pred HHHHHHhc--CCCCeEEEeCCCCcCCHHHHHHHH-HHHHHhcc-CCeEEEEE
Confidence 55777787 8 99999999999 9999999998 88887643 45666663
No 304
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.34 E-value=8.1e-05 Score=59.27 Aligned_cols=26 Identities=35% Similarity=0.201 Sum_probs=22.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCC
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETV 29 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~ 29 (238)
.++|.|+.||||||+++.|...++..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~ 27 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKR 27 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 58999999999999999999987543
No 305
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.34 E-value=0.00013 Score=58.55 Aligned_cols=25 Identities=28% Similarity=0.407 Sum_probs=22.8
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCC
Q 026486 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (238)
Q Consensus 2 ~~~v~IiGpnGSGKSTLl~~l~g~l 26 (238)
...++|.|+.||||||+++.|+..+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3578999999999999999999987
No 306
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.33 E-value=0.0001 Score=59.60 Aligned_cols=22 Identities=36% Similarity=0.700 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHHhCC
Q 026486 5 QLVIGPAGSGKSTYCSSLYRHC 26 (238)
Q Consensus 5 v~IiGpnGSGKSTLl~~l~g~l 26 (238)
++|+||+|||||||++.|..-.
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6799999999999999987654
No 307
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.33 E-value=0.00013 Score=58.81 Aligned_cols=25 Identities=32% Similarity=0.521 Sum_probs=22.2
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCC
Q 026486 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (238)
Q Consensus 2 ~~~v~IiGpnGSGKSTLl~~l~g~l 26 (238)
+..++|+|++||||||+++.|+..+
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999998765
No 308
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.32 E-value=0.00029 Score=56.25 Aligned_cols=22 Identities=36% Similarity=0.584 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHHhCC
Q 026486 5 QLVIGPAGSGKSTYCSSLYRHC 26 (238)
Q Consensus 5 v~IiGpnGSGKSTLl~~l~g~l 26 (238)
+.|.||+|+||||+++.++..+
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999998865
No 309
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.31 E-value=0.00013 Score=58.15 Aligned_cols=23 Identities=22% Similarity=0.450 Sum_probs=21.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~ 25 (238)
..++|+|++||||||+++.|+..
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999986
No 310
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.30 E-value=0.00013 Score=58.03 Aligned_cols=24 Identities=33% Similarity=0.620 Sum_probs=21.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l 26 (238)
..++|+|++||||||+++.|+..+
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 578999999999999999998755
No 311
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.30 E-value=0.00013 Score=58.79 Aligned_cols=26 Identities=31% Similarity=0.212 Sum_probs=22.9
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCCc
Q 026486 2 GYAQLVIGPAGSGKSTYCSSLYRHCE 27 (238)
Q Consensus 2 ~~~v~IiGpnGSGKSTLl~~l~g~l~ 27 (238)
...++|.|++||||||+++.|+..+.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 36799999999999999999998654
No 312
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=97.30 E-value=0.00019 Score=66.10 Aligned_cols=23 Identities=26% Similarity=0.457 Sum_probs=19.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~ 25 (238)
+-++|+|++|+|||||++.+.|-
T Consensus 234 ~kV~ivG~~nvGKSSLln~L~~~ 256 (476)
T 3gee_A 234 VSTVIAGKPNAGKSTLLNTLLGQ 256 (476)
T ss_dssp EEEEEECCTTSSHHHHHHHCC--
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 55899999999999999998764
No 313
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.28 E-value=6.9e-05 Score=65.50 Aligned_cols=35 Identities=26% Similarity=0.412 Sum_probs=28.8
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeec
Q 026486 5 QLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD 39 (238)
Q Consensus 5 v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d 39 (238)
+++.||+|+||||+++++++.+.+..+.+.+.+.+
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~ 83 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELN 83 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEc
Confidence 68999999999999999999987776665555443
No 314
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.27 E-value=0.00013 Score=63.04 Aligned_cols=24 Identities=25% Similarity=0.246 Sum_probs=21.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l 26 (238)
..++|+|++|+|||||++.+.|.-
T Consensus 9 ~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 9 GFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTCS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Confidence 368999999999999999999963
No 315
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.26 E-value=0.00015 Score=58.87 Aligned_cols=23 Identities=22% Similarity=0.446 Sum_probs=20.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCC
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l 26 (238)
.++|+||+||||||+++.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997654
No 316
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.25 E-value=0.0036 Score=56.41 Aligned_cols=25 Identities=24% Similarity=0.577 Sum_probs=22.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCc
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCE 27 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~ 27 (238)
-++.+.||+|+|||++.+++++...
T Consensus 183 rGvLL~GPPGTGKTllAkAiA~e~~ 207 (405)
T 4b4t_J 183 KGVILYGPPGTGKTLLARAVAHHTD 207 (405)
T ss_dssp CCEEEESCSSSSHHHHHHHHHHHHT
T ss_pred CceEEeCCCCCCHHHHHHHHHHhhC
Confidence 4688999999999999999999753
No 317
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=97.25 E-value=0.00017 Score=58.51 Aligned_cols=23 Identities=39% Similarity=0.520 Sum_probs=21.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~ 25 (238)
++++|+|+.||||||+.+.++..
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 78999999999999999999985
No 318
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.25 E-value=0.00018 Score=66.69 Aligned_cols=35 Identities=20% Similarity=0.333 Sum_probs=29.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecC
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~ 40 (238)
.++|+||||+|||||++++++... .+.+.+.+.+.
T Consensus 66 GvLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~ 100 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDF 100 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGG
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHH
Confidence 589999999999999999999874 67788877553
No 319
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.24 E-value=0.00018 Score=57.87 Aligned_cols=24 Identities=33% Similarity=0.636 Sum_probs=21.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l 26 (238)
..++|.|++||||||+++.|+..+
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 578999999999999999998754
No 320
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.24 E-value=0.00016 Score=57.01 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=20.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l 26 (238)
-.++|+|++||||||+++.++..+
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHh
Confidence 357899999999999999998654
No 321
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.23 E-value=0.00093 Score=58.54 Aligned_cols=117 Identities=12% Similarity=0.137 Sum_probs=59.4
Q ss_pred eEEEEcCCCCcHHHHHHH-HHhCCcC-CCceEEEeeecCCCCCCCCCCCCChhhhhhHHHHHHHcCCCCCCchhhhHHhh
Q 026486 4 AQLVIGPAGSGKSTYCSS-LYRHCET-VRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~-l~g~l~~-~~G~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~~ 81 (238)
++.|.||+|||||||+-. ++...+. .+|.+.+..-. + .+ + . ..++.+|+....-.... ..-
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E---~--s~----~--~-----~ra~~lGvd~d~llv~~-~~~ 92 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSE---F--GI----T--P-----AYLRSMGVDPERVIHTP-VQS 92 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESS---C--CC----C--H-----HHHHHTTCCGGGEEEEE-CSB
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecc---c--hh----h--H-----HHHHHhCCCHHHeEEEc-CCC
Confidence 468999999999999644 4444432 14555544211 0 11 1 0 13566776543211111 001
Q ss_pred hhhHHHHHHHHH--hccCCCCEEEEeCCCcccH-------------H--hHHHHHHHHHHH----HHhCCCeEEEEE
Q 026486 82 EDNLDDWLAEEL--DNYLDDDYLVFDCPGQIEL-------------F--THVPVLRNFVDH----LKSRNFNVCAVY 137 (238)
Q Consensus 82 ~~~~s~~la~~l--~~~~~p~~lilDEPt~LD~-------------~--~~~~~~~~ll~~----l~~~~~tvi~v~ 137 (238)
...+..+++..+ ..-.+|+++++|--+++=+ . .+.+.+...+++ +++.+.+++++.
T Consensus 93 ~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tN 169 (333)
T 3io5_A 93 LEQLRIDMVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAIN 169 (333)
T ss_dssp HHHHHHHHHHHHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEC
Confidence 111113344454 2222799999999887311 0 233233244444 345788888874
No 322
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.23 E-value=0.00017 Score=57.09 Aligned_cols=24 Identities=33% Similarity=0.391 Sum_probs=21.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCc
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCE 27 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~ 27 (238)
.++|.|+.||||||+++.|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999998764
No 323
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.22 E-value=0.00017 Score=60.33 Aligned_cols=24 Identities=25% Similarity=0.607 Sum_probs=21.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCc
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCE 27 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~ 27 (238)
.+.|.||+|+||||+++++++.+.
T Consensus 47 ~vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECcCCCCHHHHHHHHHHHcC
Confidence 578999999999999999999764
No 324
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=97.22 E-value=0.0032 Score=57.98 Aligned_cols=23 Identities=22% Similarity=0.219 Sum_probs=21.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~ 25 (238)
+.++++|+.++|||||++.|.|.
T Consensus 20 ~~I~iiG~~d~GKSTLi~~L~~~ 42 (482)
T 1wb1_A 20 INLGIFGHIDHGKTTLSKVLTEI 42 (482)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCChHHHHHHHHHCC
Confidence 67899999999999999999864
No 325
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.22 E-value=0.0017 Score=56.20 Aligned_cols=22 Identities=23% Similarity=0.170 Sum_probs=19.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHh
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYR 24 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g 24 (238)
-++.|.||+|||||||+..++.
T Consensus 99 ~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 99 SVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999988875
No 326
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.21 E-value=0.00018 Score=58.49 Aligned_cols=23 Identities=22% Similarity=0.403 Sum_probs=20.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCC
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l 26 (238)
.++|+||+||||||+++.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997654
No 327
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.20 E-value=0.00018 Score=58.89 Aligned_cols=24 Identities=25% Similarity=0.463 Sum_probs=21.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l 26 (238)
..++|+|++||||||+++.|+..+
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999998765
No 328
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=97.20 E-value=0.0038 Score=56.72 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=20.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~ 25 (238)
.-++++|..++|||||++.|.+.
T Consensus 18 ~~i~iiG~~d~GKSTL~~~Ll~~ 40 (439)
T 3j2k_7 18 VNVVFIGHVDAGKSTIGGQIMYL 40 (439)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 46899999999999999999654
No 329
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.19 E-value=0.00012 Score=57.72 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=17.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l 26 (238)
..++|.|++||||||+.+.|+..+
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 568999999999999999998765
No 330
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.19 E-value=0.00029 Score=57.11 Aligned_cols=37 Identities=19% Similarity=0.159 Sum_probs=28.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~ 40 (238)
..++|+|++|||||||++.+.+..... .++.+.+.++
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~~~-~~~~~i~~d~ 67 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIGNE-VKIGAMLGDV 67 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTTT-SCEEEEECSC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEecCC
Confidence 578999999999999999999875443 4565555443
No 331
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.19 E-value=0.00068 Score=66.02 Aligned_cols=26 Identities=27% Similarity=0.346 Sum_probs=20.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCC
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETV 29 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~ 29 (238)
.++|+||+||||||++..+.+.....
T Consensus 111 ~vii~gpTGSGKTtllp~ll~~~~~~ 136 (773)
T 2xau_A 111 IMVFVGETGSGKTTQIPQFVLFDEMP 136 (773)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHCG
T ss_pred eEEEECCCCCCHHHHHHHHHHHhccc
Confidence 47899999999999888886654433
No 332
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.19 E-value=0.0013 Score=69.68 Aligned_cols=118 Identities=15% Similarity=0.154 Sum_probs=63.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCCCCCCCCCCCChhhhhhHHHHHHHcCCCCCCchhhhHHhhh
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~~~ 82 (238)
-++.|.||+|+|||||+..++.-....++++.+...+ +.+.... ++.+|+.-..-...+.+ ..
T Consensus 1428 ~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e---------------~~~~~l~-a~~~G~dl~~l~v~~~~-~~ 1490 (2050)
T 3cmu_A 1428 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE---------------HALDPIY-ARKLGVDIDNLLCSQPD-TG 1490 (2050)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTT---------------SCCCHHH-HHHTTCCTTTCEEECCS-SH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcc---------------cccCHHH-HHHcCCCchhceeecCC-hH
Confidence 4688999999999999988876544456666655321 1000111 34445332110111100 01
Q ss_pred hhHHHHHHHHHhccCCCCEEEEeCCCcccHHh-------------H----HHHHHHHHHHHHhCCCeEEEEEe
Q 026486 83 DNLDDWLAEELDNYLDDDYLVFDCPGQIELFT-------------H----VPVLRNFVDHLKSRNFNVCAVYL 138 (238)
Q Consensus 83 ~~~s~~la~~l~~~~~p~~lilDEPt~LD~~~-------------~----~~~~~~ll~~l~~~~~tvi~v~l 138 (238)
... .++++.++....|+++++||-.++-+.. . .+.+.++...+.+++.++|+++.
T Consensus 1491 E~~-l~~~~~lvr~~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~v~VI~tNq 1562 (2050)
T 3cmu_A 1491 EQA-LEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ 1562 (2050)
T ss_dssp HHH-HHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred HHH-HHHHHHHHhcCCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCCcEEEEEcc
Confidence 122 4455555432389999999987633321 2 22333455555556777777753
No 333
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=97.19 E-value=0.0043 Score=60.29 Aligned_cols=77 Identities=8% Similarity=0.106 Sum_probs=42.4
Q ss_pred CCCEEEEeCCCccc------HHh-HHHHHHHHHHHHHhCCCeEEEEEecccccccchhHHHhhhHHHHHHHHhhcCCeee
Q 026486 98 DDDYLVFDCPGQIE------LFT-HVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVN 170 (238)
Q Consensus 98 ~p~~lilDEPt~LD------~~~-~~~~~~~ll~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l~~~~~~~~~~~p~~~ 170 (238)
.+++.++|.||-.. +.. ...+- +++.+.......+ +++++|+..-....+. +......-..+.|.+-
T Consensus 149 ~~qL~LVDTPGi~~~~~~~qp~di~~~i~-~lv~~yi~~~aDl-IL~VVDAs~~~~~~d~----l~ll~~L~~~g~pvIl 222 (772)
T 3zvr_A 149 VLNLTLVDLPGMTKVPVGDQPPDIEFQIR-DMLMQFVTKENCL-ILAVSPANSDLANSDA----LKIAKEVDPQGQRTIG 222 (772)
T ss_dssp CCSEEEEECCCCCCCCSSCCCCHHHHHHH-HHHHHHHTSTTEE-EEEEEETTSCSSSCHH----HHHHHHHCTTCSSEEE
T ss_pred CCceEEEECCCcccCCCCCCcHHHHHHHH-HHHHHHHhcCCcE-EEEEEcCCCCcchhHH----HHHHHHHHhcCCCEEE
Confidence 56799999999522 211 22333 5566654444444 3445676542211111 0011112245789999
Q ss_pred eecccccccc
Q 026486 171 ILSKMDLVTN 180 (238)
Q Consensus 171 vlsk~dll~~ 180 (238)
|+||+|++.+
T Consensus 223 VlNKiDlv~~ 232 (772)
T 3zvr_A 223 VITKLDLMDE 232 (772)
T ss_dssp EEECTTSSCT
T ss_pred EEeCcccCCc
Confidence 9999999864
No 334
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=97.19 E-value=0.00024 Score=53.95 Aligned_cols=23 Identities=35% Similarity=0.632 Sum_probs=21.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~ 25 (238)
+-++++|+.|+|||||++.+.+-
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 67899999999999999999874
No 335
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.18 E-value=0.00018 Score=59.16 Aligned_cols=24 Identities=33% Similarity=0.587 Sum_probs=21.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l 26 (238)
..++|+|++||||||+++.|+..+
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 568999999999999999999754
No 336
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.18 E-value=0.0002 Score=58.76 Aligned_cols=23 Identities=30% Similarity=0.551 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCC
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l 26 (238)
++.|+||+||||+|.++.|+..+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999865
No 337
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=97.17 E-value=0.00022 Score=61.07 Aligned_cols=23 Identities=35% Similarity=0.403 Sum_probs=21.1
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHh
Q 026486 2 GYAQLVIGPAGSGKSTYCSSLYR 24 (238)
Q Consensus 2 ~~~v~IiGpnGSGKSTLl~~l~g 24 (238)
+++++|.|++||||||+++.|+.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999985
No 338
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.16 E-value=0.0002 Score=60.47 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=22.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCc
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCE 27 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~ 27 (238)
..++|+|++||||||+.+.|+..+.
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 5789999999999999999998654
No 339
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.15 E-value=0.00023 Score=57.44 Aligned_cols=25 Identities=24% Similarity=0.149 Sum_probs=22.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCc
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCE 27 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~ 27 (238)
..++|.|+.||||||+++.|+..+.
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHH
Confidence 6799999999999999999998654
No 340
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=97.14 E-value=7.2e-05 Score=64.53 Aligned_cols=26 Identities=23% Similarity=0.210 Sum_probs=19.9
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCCc
Q 026486 2 GYAQLVIGPAGSGKSTYCSSLYRHCE 27 (238)
Q Consensus 2 ~~~v~IiGpnGSGKSTLl~~l~g~l~ 27 (238)
.++++|.||+||||||+++.+...+.
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 36899999999999999999998654
No 341
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.14 E-value=0.00024 Score=57.98 Aligned_cols=24 Identities=33% Similarity=0.595 Sum_probs=21.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l 26 (238)
..++|+|++||||||+++.|+..+
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 468899999999999999998865
No 342
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.14 E-value=0.00023 Score=58.92 Aligned_cols=24 Identities=38% Similarity=0.631 Sum_probs=21.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l 26 (238)
-++.|+||+||||+|.++.|+..+
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 367899999999999999999765
No 343
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.14 E-value=0.00027 Score=56.23 Aligned_cols=23 Identities=26% Similarity=0.287 Sum_probs=20.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~ 25 (238)
+-++++|++|+|||||++.+.+-
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999873
No 344
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.14 E-value=0.00025 Score=55.04 Aligned_cols=23 Identities=43% Similarity=0.323 Sum_probs=20.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCC
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l 26 (238)
.++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999854
No 345
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.14 E-value=0.00026 Score=59.19 Aligned_cols=24 Identities=29% Similarity=0.396 Sum_probs=21.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l 26 (238)
..++|+||+||||||+++.|+..+
T Consensus 30 ~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 30 GRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 678999999999999999998754
No 346
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=97.13 E-value=0.0026 Score=58.47 Aligned_cols=23 Identities=30% Similarity=0.431 Sum_probs=20.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~ 25 (238)
+-++++|..|+|||||++.|.+.
T Consensus 34 ~ki~iiG~~~~GKSTLi~~Ll~~ 56 (483)
T 3p26_A 34 LSFVVLGHVDAGKSTLMGRLLYD 56 (483)
T ss_dssp EEEEEESCGGGTHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 56899999999999999999775
No 347
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.13 E-value=0.003 Score=53.79 Aligned_cols=24 Identities=21% Similarity=0.245 Sum_probs=21.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCc
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCE 27 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~ 27 (238)
.+.|.||+|+||||+++.++..+.
T Consensus 69 ~vll~G~~GtGKT~la~~la~~l~ 92 (309)
T 3syl_A 69 HMSFTGNPGTGKTTVALKMAGLLH 92 (309)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999998888764
No 348
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=97.13 E-value=0.00026 Score=54.18 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=20.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~ 25 (238)
+-++|+|++|+|||||++.+.+-
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 56899999999999999999864
No 349
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.12 E-value=0.00029 Score=56.50 Aligned_cols=22 Identities=23% Similarity=0.252 Sum_probs=20.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHh
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYR 24 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g 24 (238)
+-++++|++|+|||||++.+.+
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 5689999999999999999976
No 350
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.12 E-value=0.00019 Score=63.65 Aligned_cols=29 Identities=34% Similarity=0.502 Sum_probs=22.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCc
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRR 31 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G 31 (238)
+-++|+|++|+|||||++.|.+......+
T Consensus 38 ~~I~vvG~~g~GKSTLln~L~~~~~~~~~ 66 (361)
T 2qag_A 38 FTLMVVGESGLGKSTLINSLFLTDLYPER 66 (361)
T ss_dssp ECEEECCCTTSCHHHHHHHHTTCCC----
T ss_pred EEEEEEcCCCCCHHHHHHHHhCCCCCCCC
Confidence 56899999999999999999887544433
No 351
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.11 E-value=0.00027 Score=62.00 Aligned_cols=27 Identities=22% Similarity=0.390 Sum_probs=23.7
Q ss_pred CCeeEEEEcCCCCcHHHHHHHHHhCCc
Q 026486 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE 27 (238)
Q Consensus 1 ~~~~v~IiGpnGSGKSTLl~~l~g~l~ 27 (238)
|+..++|+||+||||||+.+.|+..+.
T Consensus 4 m~~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 4 LPPAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 556899999999999999999998653
No 352
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=97.10 E-value=0.0042 Score=56.25 Aligned_cols=23 Identities=35% Similarity=0.453 Sum_probs=20.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~ 25 (238)
+-++++|+.|+|||||++.+.+.
T Consensus 7 ~~I~iiG~~~~GKSTLi~~Ll~~ 29 (435)
T 1jny_A 7 LNLIVIGHVDHGKSTLVGRLLMD 29 (435)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEEeCCCCCHHHHHHHHHHH
Confidence 56899999999999999999763
No 353
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.09 E-value=0.0003 Score=54.78 Aligned_cols=24 Identities=33% Similarity=0.339 Sum_probs=21.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l 26 (238)
-+++|+|+.||||||+.+.|+..+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 368899999999999999998754
No 354
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=97.08 E-value=0.0049 Score=58.40 Aligned_cols=23 Identities=30% Similarity=0.431 Sum_probs=20.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~ 25 (238)
+-++|+|+.|+|||||++.|.+-
T Consensus 168 lkV~ivG~~n~GKSTLin~Ll~~ 190 (611)
T 3izq_1 168 LSFVVLGHVDAGKSTLMGRLLYD 190 (611)
T ss_dssp CEEEEECCSSSCHHHHHHHHHSC
T ss_pred eEEEEEECCCCCHHHHHHHHHHh
Confidence 56899999999999999999875
No 355
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.06 E-value=0.00034 Score=53.62 Aligned_cols=22 Identities=32% Similarity=0.557 Sum_probs=20.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHh
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYR 24 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g 24 (238)
+-++++|+.|+|||||++.+.+
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 5689999999999999999987
No 356
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.06 E-value=0.00031 Score=57.74 Aligned_cols=23 Identities=35% Similarity=0.521 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCC
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l 26 (238)
.++|.|++||||||+++.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998765
No 357
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=97.05 E-value=0.00036 Score=53.82 Aligned_cols=23 Identities=26% Similarity=0.533 Sum_probs=20.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~ 25 (238)
+-++|+|++|+|||||++.+.+-
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 66899999999999999999863
No 358
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=97.03 E-value=0.00029 Score=53.96 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=20.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~ 25 (238)
+-++++|++|+|||||++.+.|.
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEEECCCCCCHHHHHHHHcCc
Confidence 56899999999999999999764
No 359
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.03 E-value=0.0021 Score=55.43 Aligned_cols=28 Identities=25% Similarity=0.374 Sum_probs=23.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCc
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRR 31 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G 31 (238)
.+.|.||+|+|||++++.+........+
T Consensus 27 ~vLi~Ge~GtGKt~lAr~i~~~~~~~~~ 54 (304)
T 1ojl_A 27 TVLIHGDSGTGKELVARALHACSARSDR 54 (304)
T ss_dssp CEEEESCTTSCHHHHHHHHHHHSSCSSS
T ss_pred cEEEECCCCchHHHHHHHHHHhCcccCC
Confidence 4789999999999999999987654333
No 360
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=97.02 E-value=0.00041 Score=53.11 Aligned_cols=23 Identities=22% Similarity=0.340 Sum_probs=20.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~ 25 (238)
+-++++|+.|+|||||++.+.+-
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 56899999999999999999875
No 361
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.02 E-value=0.00038 Score=53.24 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=20.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~ 25 (238)
+-++++|+.|+|||||++.+.+-
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 66899999999999999999864
No 362
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=97.02 E-value=0.0004 Score=53.34 Aligned_cols=23 Identities=26% Similarity=0.518 Sum_probs=20.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~ 25 (238)
+-++++|++|+|||||++.+.+.
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCCCHHHHHHHHHhc
Confidence 56899999999999999999864
No 363
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=97.01 E-value=0.00038 Score=53.34 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=20.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~ 25 (238)
+-++|+|++|+|||||++.+.+-
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 56899999999999999999874
No 364
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=97.00 E-value=0.00031 Score=57.05 Aligned_cols=25 Identities=28% Similarity=0.336 Sum_probs=22.5
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCC
Q 026486 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (238)
Q Consensus 2 ~~~v~IiGpnGSGKSTLl~~l~g~l 26 (238)
+++++|+|++||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4789999999999999999998854
No 365
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=97.00 E-value=0.00044 Score=53.07 Aligned_cols=23 Identities=13% Similarity=0.361 Sum_probs=20.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~ 25 (238)
+-++|+|++|+|||||++.+.+-
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 56899999999999999999874
No 366
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.99 E-value=0.00044 Score=53.51 Aligned_cols=23 Identities=22% Similarity=0.520 Sum_probs=20.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~ 25 (238)
+-++|+|++|+|||||++.+.+-
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 56899999999999999999864
No 367
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.99 E-value=0.00037 Score=56.68 Aligned_cols=23 Identities=17% Similarity=0.319 Sum_probs=20.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCC
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l 26 (238)
.++|.|++||||||+++.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 36899999999999999998854
No 368
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.99 E-value=0.00034 Score=55.08 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=20.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~ 25 (238)
+-++++|++|+|||||++.+.+-
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 67899999999999999999864
No 369
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.99 E-value=0.00044 Score=53.54 Aligned_cols=23 Identities=17% Similarity=0.300 Sum_probs=20.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~ 25 (238)
+-++|+|++|+|||||++.+.+-
T Consensus 9 ~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 9 PVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CEEEEESCTTTTHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999874
No 370
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=96.98 E-value=0.00043 Score=59.05 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=21.9
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhC
Q 026486 2 GYAQLVIGPAGSGKSTYCSSLYRH 25 (238)
Q Consensus 2 ~~~v~IiGpnGSGKSTLl~~l~g~ 25 (238)
.+.++++|++|+|||||++.++|.
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCC
Confidence 467899999999999999999985
No 371
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.97 E-value=0.00048 Score=54.15 Aligned_cols=24 Identities=25% Similarity=0.495 Sum_probs=21.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l 26 (238)
+-++|+|+.|+|||||++.+.+-.
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc
Confidence 678999999999999999999863
No 372
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=96.97 E-value=0.0039 Score=54.31 Aligned_cols=26 Identities=27% Similarity=0.319 Sum_probs=22.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCET 28 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~ 28 (238)
..+.|.||+|+||||+++.++..+..
T Consensus 39 ~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp SEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 35789999999999999999987654
No 373
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.97 E-value=0.00044 Score=54.00 Aligned_cols=23 Identities=35% Similarity=0.621 Sum_probs=20.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~ 25 (238)
+-++|+|++|+|||||++.+.+-
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 66899999999999999999874
No 374
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.97 E-value=0.0005 Score=52.79 Aligned_cols=23 Identities=30% Similarity=0.405 Sum_probs=20.7
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHh
Q 026486 2 GYAQLVIGPAGSGKSTYCSSLYR 24 (238)
Q Consensus 2 ~~~v~IiGpnGSGKSTLl~~l~g 24 (238)
.+-++++|++|+|||||++.+.+
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 36789999999999999999976
No 375
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.96 E-value=0.00045 Score=52.82 Aligned_cols=22 Identities=18% Similarity=0.471 Sum_probs=20.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHh
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYR 24 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g 24 (238)
+-++++|+.|+|||||++.+.+
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 6689999999999999999987
No 376
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.96 E-value=0.00043 Score=56.50 Aligned_cols=24 Identities=33% Similarity=0.607 Sum_probs=21.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l 26 (238)
..++|+|++||||||+++.|+..+
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 457899999999999999998865
No 377
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.96 E-value=0.00039 Score=53.81 Aligned_cols=22 Identities=32% Similarity=0.546 Sum_probs=20.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHh
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYR 24 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g 24 (238)
+-++|+|++|+|||||++.+.+
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCS
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 5689999999999999999976
No 378
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.96 E-value=0.00077 Score=53.30 Aligned_cols=24 Identities=21% Similarity=0.235 Sum_probs=20.4
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhC
Q 026486 2 GYAQLVIGPAGSGKSTYCSSLYRH 25 (238)
Q Consensus 2 ~~~v~IiGpnGSGKSTLl~~l~g~ 25 (238)
.+-++|+|++|+|||||++.+.+-
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 367899999999999999877653
No 379
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.95 E-value=0.00063 Score=55.27 Aligned_cols=37 Identities=22% Similarity=0.216 Sum_probs=27.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~ 40 (238)
+.++|+|++|+|||||++.+.+..... ..+...+.++
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~~~~-~~~~~i~~d~ 75 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNLKDK-YKIACIAGDV 75 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHTTT-CCEEEEEEET
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEECCC
Confidence 678999999999999999998865443 4455554443
No 380
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.94 E-value=0.002 Score=59.44 Aligned_cols=23 Identities=26% Similarity=0.534 Sum_probs=21.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCC
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l 26 (238)
.+.|.||+|+|||+++++++...
T Consensus 240 ~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 240 GILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred cEEEECcCCCCHHHHHHHHHHHh
Confidence 58899999999999999998865
No 381
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=96.94 E-value=0.0013 Score=53.88 Aligned_cols=39 Identities=28% Similarity=0.360 Sum_probs=33.7
Q ss_pred CCeeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCC
Q 026486 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA 41 (238)
Q Consensus 1 ~~~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~ 41 (238)
|+ ++|.|..|+||||+.-.++..+...+.+|.+...|+.
T Consensus 1 mk--I~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 39 (254)
T 3kjh_A 1 MK--LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDPD 39 (254)
T ss_dssp CE--EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEEECTT
T ss_pred CE--EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 55 4558999999999999999998877779999999985
No 382
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.93 E-value=0.00047 Score=53.25 Aligned_cols=23 Identities=13% Similarity=0.385 Sum_probs=20.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~ 25 (238)
+-++|+|+.|+|||||++.+.+-
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 67899999999999999999863
No 383
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.93 E-value=0.00029 Score=54.97 Aligned_cols=23 Identities=30% Similarity=0.402 Sum_probs=20.1
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHh
Q 026486 2 GYAQLVIGPAGSGKSTYCSSLYR 24 (238)
Q Consensus 2 ~~~v~IiGpnGSGKSTLl~~l~g 24 (238)
.+-++|+|++|+|||||++.+.+
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 36789999999999999988864
No 384
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.92 E-value=0.00055 Score=53.02 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=20.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~ 25 (238)
+-++|+|++|+|||||++.+.+-
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 56899999999999999999863
No 385
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.92 E-value=0.0026 Score=55.73 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=19.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHhC
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRH 25 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~ 25 (238)
.+.|.||+|+|||||+..++..
T Consensus 125 viLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 125 MVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEEECSCSSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHh
Confidence 4689999999999999998764
No 386
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.90 E-value=0.007 Score=52.41 Aligned_cols=34 Identities=9% Similarity=0.178 Sum_probs=24.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEee
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN 37 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~ 37 (238)
.+.|.|++|+|||||+..++...-..++.+.+..
T Consensus 70 l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~s 103 (315)
T 3bh0_A 70 FVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 103 (315)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 5789999999999999888754433334454443
No 387
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.90 E-value=0.00082 Score=55.16 Aligned_cols=36 Identities=25% Similarity=0.378 Sum_probs=23.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHh-CCcCCCceEEEeee
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYR-HCETVRRTMHIVNL 38 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g-~l~~~~G~i~i~~~ 38 (238)
-.+.|.|++|+|||||+.-++- .....++.+.+...
T Consensus 31 ~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~ 67 (251)
T 2zts_A 31 TTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc
Confidence 3678999999999999866542 22222345555543
No 388
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.89 E-value=0.00055 Score=53.87 Aligned_cols=23 Identities=35% Similarity=0.632 Sum_probs=21.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~ 25 (238)
+-++++|+.|+|||||++.+.+-
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 67899999999999999999873
No 389
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.89 E-value=0.00059 Score=53.90 Aligned_cols=23 Identities=30% Similarity=0.608 Sum_probs=21.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~ 25 (238)
+-++|+|++|+|||||++.+.+-
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 56899999999999999999884
No 390
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.89 E-value=0.00048 Score=61.15 Aligned_cols=20 Identities=35% Similarity=0.640 Sum_probs=18.4
Q ss_pred eEEEEcCCCCcHHHHHHHHH
Q 026486 4 AQLVIGPAGSGKSTYCSSLY 23 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~ 23 (238)
..+|+|||||||||++.+|.
T Consensus 27 l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 27 IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 57899999999999999987
No 391
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.89 E-value=0.00061 Score=52.62 Aligned_cols=23 Identities=26% Similarity=0.505 Sum_probs=21.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~ 25 (238)
+-++|+|+.|+|||||++.+.+-
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 56899999999999999999874
No 392
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.88 E-value=0.0021 Score=58.50 Aligned_cols=25 Identities=24% Similarity=0.442 Sum_probs=22.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCc
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCE 27 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~ 27 (238)
-++.+.||+|+|||++.+++++...
T Consensus 216 rGvLL~GPPGtGKTllAkAiA~e~~ 240 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTLLAKAVAATIG 240 (437)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhC
Confidence 4789999999999999999999754
No 393
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.88 E-value=0.011 Score=54.10 Aligned_cols=25 Identities=24% Similarity=0.505 Sum_probs=22.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCc
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCE 27 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~ 27 (238)
-++.+.||+|+|||+|.+++++...
T Consensus 244 rGILLyGPPGTGKTlLAkAiA~e~~ 268 (467)
T 4b4t_H 244 KGILLYGPPGTGKTLCARAVANRTD 268 (467)
T ss_dssp SEEEECSCTTSSHHHHHHHHHHHHT
T ss_pred CceEeeCCCCCcHHHHHHHHHhccC
Confidence 4688999999999999999999754
No 394
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=96.88 E-value=0.00081 Score=54.81 Aligned_cols=22 Identities=36% Similarity=0.489 Sum_probs=19.0
Q ss_pred CCeeEEEEcCCCCcHHHHHHHH
Q 026486 1 MGYAQLVIGPAGSGKSTYCSSL 22 (238)
Q Consensus 1 ~~~~v~IiGpnGSGKSTLl~~l 22 (238)
|+.++.+.|++||||||++..+
T Consensus 4 ~~mi~l~tG~pGsGKT~~a~~~ 25 (199)
T 2r2a_A 4 MAEICLITGTPGSGKTLKMVSM 25 (199)
T ss_dssp CCCEEEEECCTTSSHHHHHHHH
T ss_pred ceeEEEEEeCCCCCHHHHHHHH
Confidence 5678899999999999998664
No 395
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.87 E-value=0.00062 Score=53.23 Aligned_cols=23 Identities=22% Similarity=0.301 Sum_probs=20.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~ 25 (238)
+-++|+|+.|+|||||++.+.+-
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 56899999999999999999874
No 396
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.87 E-value=0.0041 Score=56.42 Aligned_cols=35 Identities=11% Similarity=0.242 Sum_probs=26.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCC-CceEEEeee
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETV-RRTMHIVNL 38 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~-~G~i~i~~~ 38 (238)
.+.|.|++|+|||||+..++...... +..|.+...
T Consensus 202 l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 202 LNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 57899999999999998888765433 345665544
No 397
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.87 E-value=0.00071 Score=53.13 Aligned_cols=25 Identities=28% Similarity=0.448 Sum_probs=22.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCc
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCE 27 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~ 27 (238)
+-++|+|++|+|||||++.+.|...
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHHhhcc
Confidence 5689999999999999999998654
No 398
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.86 E-value=0.00055 Score=58.91 Aligned_cols=25 Identities=28% Similarity=0.636 Sum_probs=22.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCc
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCE 27 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~ 27 (238)
-.+.|.||+|+||||+++++++...
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCCcCHHHHHHHHHHHhC
Confidence 3588999999999999999999763
No 399
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.85 E-value=0.00068 Score=52.57 Aligned_cols=23 Identities=17% Similarity=0.433 Sum_probs=20.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~ 25 (238)
+-++++|++|+|||||++.+.+-
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 56899999999999999999874
No 400
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.84 E-value=0.00066 Score=51.81 Aligned_cols=21 Identities=29% Similarity=0.339 Sum_probs=19.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHh
Q 026486 4 AQLVIGPAGSGKSTYCSSLYR 24 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g 24 (238)
-++++|++|+|||||++.+.+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 478999999999999999976
No 401
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.83 E-value=0.00066 Score=56.03 Aligned_cols=24 Identities=29% Similarity=0.606 Sum_probs=21.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l 26 (238)
..++|+|++||||||+++.|+..+
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999865
No 402
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.82 E-value=0.00065 Score=53.07 Aligned_cols=23 Identities=39% Similarity=0.609 Sum_probs=20.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~ 25 (238)
+-++|+|+.|+|||||++.+.+-
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 56899999999999999999864
No 403
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.82 E-value=0.0028 Score=54.79 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCC
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l 26 (238)
.+.|.||+|+||||+++.++...
T Consensus 57 ~vll~G~~GtGKT~la~~ia~~~ 79 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLANIISYEM 79 (338)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHT
T ss_pred eEEEECcCCCCHHHHHHHHHHHh
Confidence 47899999999999999998865
No 404
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=96.82 E-value=0.00068 Score=53.10 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=20.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~ 25 (238)
+-++++|++|+|||||++.+.+-
T Consensus 19 ~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 19 LRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 56899999999999999999873
No 405
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.82 E-value=0.00066 Score=53.34 Aligned_cols=24 Identities=17% Similarity=0.315 Sum_probs=21.3
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhC
Q 026486 2 GYAQLVIGPAGSGKSTYCSSLYRH 25 (238)
Q Consensus 2 ~~~v~IiGpnGSGKSTLl~~l~g~ 25 (238)
.+-++|+|++|+|||||++.+.+-
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHhcC
Confidence 356899999999999999999874
No 406
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.80 E-value=0.00076 Score=52.60 Aligned_cols=23 Identities=30% Similarity=0.664 Sum_probs=20.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~ 25 (238)
+-++|+|++|+|||||++.+.+-
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 66899999999999999999853
No 407
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.80 E-value=0.0008 Score=52.21 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=20.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~ 25 (238)
+-++|+|+.|+|||||++.+.+-
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 56899999999999999999864
No 408
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.80 E-value=0.00079 Score=53.15 Aligned_cols=22 Identities=32% Similarity=0.602 Sum_probs=20.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHh
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYR 24 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g 24 (238)
+-++|+|++|+|||||++.+.+
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHc
Confidence 6789999999999999999987
No 409
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=96.79 E-value=0.00078 Score=53.62 Aligned_cols=23 Identities=17% Similarity=0.468 Sum_probs=21.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~ 25 (238)
+-++|+|+.|+|||||++.+.+-
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 56899999999999999999875
No 410
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.79 E-value=0.00076 Score=52.42 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=21.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCc
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCE 27 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~ 27 (238)
.+.|.||+|+||||+++.++..+.
T Consensus 45 ~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 45 NPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999988764
No 411
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.79 E-value=0.00074 Score=53.19 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=20.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~ 25 (238)
+-++|+|++|+|||||++.+.+-
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 56899999999999999999874
No 412
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.78 E-value=0.011 Score=53.71 Aligned_cols=25 Identities=16% Similarity=0.383 Sum_probs=22.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCc
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCE 27 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~ 27 (238)
-++.+.||+|+|||++.+++++...
T Consensus 217 rGvLLyGPPGTGKTlLAkAiA~e~~ 241 (437)
T 4b4t_I 217 KGVILYGAPGTGKTLLAKAVANQTS 241 (437)
T ss_dssp SEEEEESSTTTTHHHHHHHHHHHHT
T ss_pred CCCceECCCCchHHHHHHHHHHHhC
Confidence 4789999999999999999999754
No 413
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.77 E-value=0.00086 Score=52.72 Aligned_cols=22 Identities=18% Similarity=0.285 Sum_probs=20.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHh
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYR 24 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g 24 (238)
+-++|+|++|+|||||++.+.+
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 6789999999999999999986
No 414
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.76 E-value=0.00087 Score=52.15 Aligned_cols=23 Identities=22% Similarity=0.284 Sum_probs=20.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~ 25 (238)
+-++++|++|+|||||++.+.+-
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 67899999999999999999863
No 415
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=96.76 E-value=0.00084 Score=56.08 Aligned_cols=23 Identities=30% Similarity=0.573 Sum_probs=21.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~ 25 (238)
+-++|+|++|||||||++.+.|-
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999874
No 416
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.76 E-value=0.00086 Score=52.80 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=20.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~ 25 (238)
+-++|+|+.|+|||||++.+.+-
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 56899999999999999999863
No 417
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=96.75 E-value=0.00086 Score=53.10 Aligned_cols=23 Identities=22% Similarity=0.418 Sum_probs=20.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~ 25 (238)
+-++|+|+.|+|||||++.+.+-
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 56899999999999999999874
No 418
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=96.74 E-value=0.0079 Score=54.72 Aligned_cols=156 Identities=14% Similarity=0.211 Sum_probs=0.0
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCCCCCCCCCCCChhhhhhHHHHHHHcCCCCCCchhhhHHhh
Q 026486 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (238)
Q Consensus 2 ~~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~~ 81 (238)
.+-++++|.+|+|||||++.+.|--....+...-...+.....+.+.
T Consensus 195 ~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~--------------------------------- 241 (456)
T 4dcu_A 195 VIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYN--------------------------------- 241 (456)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEET---------------------------------
T ss_pred cceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEEC---------------------------------
Q ss_pred hhhHHHHHHHHHhccCCCCEEEEeCCC------cccHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccchhHHHhhhH
Q 026486 82 EDNLDDWLAEELDNYLDDDYLVFDCPG------QIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCM 155 (238)
Q Consensus 82 ~~~~s~~la~~l~~~~~p~~lilDEPt------~LD~~~~~~~~~~ll~~l~~~~~tvi~v~l~d~~~~~d~~~~~~~~l 155 (238)
+.++.|.|.|+ .-+...+...+ ..+..+......++++ -.+..+.+....+...+
T Consensus 242 ----------------~~~~~l~DT~G~~~~~~~~~~~e~~~~~-~~~~~~~~ad~~llvi--D~~~~~~~~~~~~~~~~ 302 (456)
T 4dcu_A 242 ----------------QQEFVIVDTAGMRKKGKVYETTEKYSVL-RALKAIDRSEVVAVVL--DGEEGIIEQDKRIAGYA 302 (456)
T ss_dssp ----------------TEEEEETTGGGTTTBTTBCCCCSHHHHH-HHHHHHHHCSEEEEEE--ETTTCCCHHHHHHHHHH
T ss_pred ----------------CceEEEEECCCCCcCcccchHHHHHHHH-HHHHHHhhCCEEEEEE--eCCCCcCHHHHHHHHHH
Q ss_pred HHHHHHHhhcCCeeeeecccccccchhhhhhhcccCHHHHHHHhhhccchhHHHHHHHHHHHHhhCCCceeEEeeccCCC
Q 026486 156 ASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKES 235 (238)
Q Consensus 156 ~~~~~~~~~~~p~~~vlsk~dll~~~~~l~~~~~~~~~~l~~~l~~~~~~~~~~l~~~i~~~i~~~~~~~~~~l~~~~~~ 235 (238)
.. .+.|.+-|.||+|+..+. ...+.+..+.+.+.+...+-..|++.+..+.+
T Consensus 303 ~~------~~~~~ilv~NK~Dl~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~ 354 (456)
T 4dcu_A 303 HE------AGKAVVIVVNKWDAVDKD----------------------ESTMKEFEENIRDHFQFLDYAPILFMSALTKK 354 (456)
T ss_dssp HH------TTCEEEEEEECGGGSCCC----------------------SSHHHHHHHHHHHHCGGGTTSCEEECCTTTCT
T ss_pred HH------cCCCEEEEEEChhcCCCc----------------------hHHHHHHHHHHHHhcccCCCCCEEEEcCCCCc
Q ss_pred CC
Q 026486 236 RY 237 (238)
Q Consensus 236 ~~ 237 (238)
.+
T Consensus 355 gv 356 (456)
T 4dcu_A 355 RI 356 (456)
T ss_dssp TG
T ss_pred CH
No 419
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.73 E-value=0.00098 Score=54.80 Aligned_cols=33 Identities=24% Similarity=0.275 Sum_probs=27.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEE
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI 35 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i 35 (238)
..+++.|+.||||||+++.|...+...+-++..
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~ 39 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLRERGIEVQL 39 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCccc
Confidence 578899999999999999999998765545543
No 420
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.72 E-value=0.00095 Score=52.72 Aligned_cols=23 Identities=22% Similarity=0.460 Sum_probs=20.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~ 25 (238)
+-++|+|+.|+|||||++.+.+-
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHhcC
Confidence 66899999999999999999874
No 421
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=96.72 E-value=0.00082 Score=52.62 Aligned_cols=24 Identities=17% Similarity=0.267 Sum_probs=21.4
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhC
Q 026486 2 GYAQLVIGPAGSGKSTYCSSLYRH 25 (238)
Q Consensus 2 ~~~v~IiGpnGSGKSTLl~~l~g~ 25 (238)
.+-++|+|+.|+|||||++.+.+-
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 367899999999999999999874
No 422
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=96.71 E-value=0.00097 Score=53.05 Aligned_cols=23 Identities=22% Similarity=0.456 Sum_probs=20.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~ 25 (238)
+-++|+|+.|+|||||++.+.+-
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 56899999999999999999874
No 423
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=96.71 E-value=0.00074 Score=57.22 Aligned_cols=24 Identities=38% Similarity=0.659 Sum_probs=21.1
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhC
Q 026486 2 GYAQLVIGPAGSGKSTYCSSLYRH 25 (238)
Q Consensus 2 ~~~v~IiGpnGSGKSTLl~~l~g~ 25 (238)
.+-++|+|++|+|||||++.|.+-
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEEEECCCCCCHHHHHHHHhCC
Confidence 367899999999999999998764
No 424
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.71 E-value=0.00064 Score=54.37 Aligned_cols=23 Identities=26% Similarity=0.518 Sum_probs=20.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~ 25 (238)
+-++|+|++|+|||||++.+.|.
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEEECCCCCCHHHHHHHHHhc
Confidence 56899999999999999998653
No 425
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=96.71 E-value=0.001 Score=52.40 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=20.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~ 25 (238)
+-++|+|+.|+|||||++.+.+-
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 67899999999999999999873
No 426
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.71 E-value=0.0009 Score=52.07 Aligned_cols=22 Identities=18% Similarity=0.238 Sum_probs=20.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHh
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYR 24 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g 24 (238)
+-++|+|++|+|||||++.+.+
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 5689999999999999999984
No 427
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=96.70 E-value=0.00091 Score=56.43 Aligned_cols=23 Identities=17% Similarity=0.216 Sum_probs=21.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~ 25 (238)
+-++++|++|+|||||++.++|-
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g~ 28 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTGT 28 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHCC
Confidence 66899999999999999999884
No 428
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=96.70 E-value=0.001 Score=51.66 Aligned_cols=23 Identities=17% Similarity=0.235 Sum_probs=20.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~ 25 (238)
+-++|+|+.|+|||||++.+.+-
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 56899999999999999999864
No 429
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=96.70 E-value=0.00095 Score=52.42 Aligned_cols=23 Identities=30% Similarity=0.457 Sum_probs=20.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~ 25 (238)
+-++|+|+.|+|||||++.+.+-
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 57899999999999999999874
No 430
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.69 E-value=0.001 Score=57.96 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=22.1
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCC
Q 026486 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (238)
Q Consensus 2 ~~~v~IiGpnGSGKSTLl~~l~g~l 26 (238)
+..++|+||+|||||||...++..+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 3478999999999999999999865
No 431
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.69 E-value=0.00097 Score=53.19 Aligned_cols=23 Identities=13% Similarity=0.249 Sum_probs=20.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~ 25 (238)
+-++|+|++|+|||||++.+.+-
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCcCHHHHHHHHHhC
Confidence 56899999999999999999974
No 432
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=96.69 E-value=0.0011 Score=52.88 Aligned_cols=23 Identities=30% Similarity=0.566 Sum_probs=21.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~ 25 (238)
+-++|+|+.|+|||||++.+.+-
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 67899999999999999999874
No 433
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=96.69 E-value=0.001 Score=52.52 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=20.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~ 25 (238)
+-++|+|+.|+|||||++.+.+-
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 56899999999999999999874
No 434
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=96.69 E-value=0.00071 Score=53.35 Aligned_cols=23 Identities=30% Similarity=0.346 Sum_probs=20.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~ 25 (238)
+-++|+|+.|+|||||++.+.+-
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCG
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 67899999999999999998875
No 435
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.68 E-value=0.00096 Score=53.68 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=21.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcC
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCET 28 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~ 28 (238)
.+.|.||+|+||||+++.++..+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcC
Confidence 5789999999999999999886643
No 436
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=96.68 E-value=0.00098 Score=52.58 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=20.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~ 25 (238)
+-++|+|+.|+|||||++.+.+-
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHcC
Confidence 56899999999999999999873
No 437
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=96.68 E-value=0.00079 Score=60.02 Aligned_cols=23 Identities=35% Similarity=0.413 Sum_probs=21.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~ 25 (238)
+.++|+|++|+|||||++.+++.
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999986
No 438
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.68 E-value=0.00089 Score=52.04 Aligned_cols=25 Identities=20% Similarity=0.368 Sum_probs=21.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcC
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCET 28 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~ 28 (238)
.+.|.||+|+||||+++.++..+..
T Consensus 45 ~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 45 NPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp EEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHh
Confidence 4689999999999999999887644
No 439
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=96.68 E-value=0.00028 Score=65.44 Aligned_cols=22 Identities=27% Similarity=0.247 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHhC
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRH 25 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~ 25 (238)
+.+|+|+|||||||++.+|..+
T Consensus 62 ~n~i~G~NGaGKS~lleAl~~l 83 (517)
T 4ad8_A 62 FCAFTGETGAGKSIIVDALGLL 83 (517)
T ss_dssp EEEEEESHHHHHHHHTHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHH
Confidence 6789999999999999999766
No 440
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.67 E-value=0.0011 Score=52.50 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=20.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~ 25 (238)
+-++|+|++|+|||||++.+.+-
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 56899999999999999999874
No 441
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.66 E-value=0.00095 Score=59.24 Aligned_cols=25 Identities=32% Similarity=0.521 Sum_probs=22.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCc
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCE 27 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~ 27 (238)
..++|+|++||||||+.++|++.+.
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhC
Confidence 3588999999999999999999764
No 442
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=96.66 E-value=0.0011 Score=53.04 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=21.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~ 25 (238)
+-++|+|+.|+|||||++.+.+-
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 67899999999999999999874
No 443
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.66 E-value=0.0011 Score=52.88 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=20.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~ 25 (238)
+-++|+|++|+|||||++.+.+-
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 56899999999999999999874
No 444
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=96.66 E-value=0.001 Score=54.36 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=20.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~ 25 (238)
+-++|+|++|+|||||++.+.+-
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 67899999999999999999873
No 445
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=96.65 E-value=0.0011 Score=52.51 Aligned_cols=23 Identities=17% Similarity=0.314 Sum_probs=21.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~ 25 (238)
+-++++|++|+|||||++.+.+-
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 56899999999999999999874
No 446
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.65 E-value=0.0011 Score=53.45 Aligned_cols=23 Identities=26% Similarity=0.504 Sum_probs=20.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~ 25 (238)
+-++|+|++|+|||||++.+.+-
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 56899999999999999998874
No 447
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=96.65 E-value=0.0011 Score=52.74 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=20.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~ 25 (238)
+-++|+|++|+|||||++.+.|.
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 56899999999999999999873
No 448
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=96.63 E-value=0.0017 Score=57.33 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=19.9
Q ss_pred eEEE--EcCCCCcHHHHHHHHHhCCc
Q 026486 4 AQLV--IGPAGSGKSTYCSSLYRHCE 27 (238)
Q Consensus 4 ~v~I--iGpnGSGKSTLl~~l~g~l~ 27 (238)
.+.| .||+|+|||||++.+.....
T Consensus 52 ~~li~i~G~~G~GKT~L~~~~~~~~~ 77 (412)
T 1w5s_A 52 NMIYGSIGRVGIGKTTLAKFTVKRVS 77 (412)
T ss_dssp EEEEECTTCCSSSHHHHHHHHHHHHH
T ss_pred EEEEeCcCcCCCCHHHHHHHHHHHHH
Confidence 3455 89999999999999987654
No 449
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=96.63 E-value=0.0011 Score=52.95 Aligned_cols=23 Identities=39% Similarity=0.637 Sum_probs=20.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~ 25 (238)
+-++|+|+.|+|||||++.+.+-
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 26 FKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHHC-
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 56899999999999999999763
No 450
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.63 E-value=0.015 Score=50.77 Aligned_cols=24 Identities=8% Similarity=-0.003 Sum_probs=21.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCc
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCE 27 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~ 27 (238)
.+.|.||+|+|||++++.++.-+.
T Consensus 47 ~lli~GpPGTGKT~~v~~v~~~L~ 70 (318)
T 3te6_A 47 LFYITNADDSTKFQLVNDVMDELI 70 (318)
T ss_dssp EEEEECCCSHHHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999998774
No 451
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=96.62 E-value=0.0011 Score=57.40 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=20.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~ 25 (238)
-.++|+|++|+|||||++.+.|-
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 46899999999999999999874
No 452
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=96.61 E-value=0.00087 Score=52.01 Aligned_cols=23 Identities=30% Similarity=0.313 Sum_probs=20.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~ 25 (238)
+-++++|++|+|||||++.+.+-
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 66899999999999999999873
No 453
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=96.61 E-value=0.00094 Score=52.94 Aligned_cols=22 Identities=23% Similarity=0.484 Sum_probs=20.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHh
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYR 24 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g 24 (238)
+-++|+|+.|+|||||++.+.+
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 5589999999999999999976
No 454
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=96.61 E-value=0.0011 Score=53.47 Aligned_cols=23 Identities=17% Similarity=0.345 Sum_probs=21.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~ 25 (238)
+-++|+|++|+|||||++.+.+-
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 56899999999999999999875
No 455
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.61 E-value=0.0011 Score=53.08 Aligned_cols=23 Identities=17% Similarity=0.304 Sum_probs=20.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~ 25 (238)
+-++|+|+.|+|||||++.+.+-
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHhcC
Confidence 56899999999999999999873
No 456
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=96.60 E-value=0.0012 Score=53.06 Aligned_cols=25 Identities=28% Similarity=0.274 Sum_probs=21.5
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCC
Q 026486 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (238)
Q Consensus 2 ~~~v~IiGpnGSGKSTLl~~l~g~l 26 (238)
.+-++|+|++|+|||||++.+.+-.
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3678999999999999999998753
No 457
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=96.60 E-value=0.001 Score=57.43 Aligned_cols=23 Identities=26% Similarity=0.273 Sum_probs=20.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~ 25 (238)
..++|+|++|+|||||++.+.|-
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999974
No 458
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.59 E-value=0.0021 Score=53.70 Aligned_cols=32 Identities=25% Similarity=0.291 Sum_probs=25.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEE
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI 35 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i 35 (238)
.+.|.||+|+|||++++.+........+....
T Consensus 31 ~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~ 62 (265)
T 2bjv_A 31 PVLIIGERGTGKELIASRLHYLSSRWQGPFIS 62 (265)
T ss_dssp CEEEECCTTSCHHHHHHHHHHTSTTTTSCEEE
T ss_pred CEEEECCCCCcHHHHHHHHHHhcCccCCCeEE
Confidence 47899999999999999999987654444433
No 459
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=96.58 E-value=0.0011 Score=52.38 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=20.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~ 25 (238)
+-++|+|+.|+|||||++.+.+-
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 56899999999999999999864
No 460
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.57 E-value=0.0016 Score=56.95 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=22.2
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCC
Q 026486 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (238)
Q Consensus 2 ~~~v~IiGpnGSGKSTLl~~l~g~l 26 (238)
+-+++|.||+|||||||...|+..+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 3578899999999999999999865
No 461
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=96.57 E-value=0.0014 Score=52.01 Aligned_cols=23 Identities=17% Similarity=0.317 Sum_probs=20.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~ 25 (238)
+-++|+|+.|+|||||++.+.+-
T Consensus 21 ~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC-
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 56899999999999999999863
No 462
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=96.57 E-value=0.0014 Score=51.73 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=20.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~ 25 (238)
+-++|+|+.|+|||||++.+.+-
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCcHHHHHHHHHhC
Confidence 56899999999999999998864
No 463
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.57 E-value=0.00089 Score=55.09 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=21.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCC
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l 26 (238)
++.+.||+|+||||++.+++..+
T Consensus 60 ~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68899999999999999999976
No 464
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=96.57 E-value=0.0011 Score=52.61 Aligned_cols=22 Identities=27% Similarity=0.321 Sum_probs=20.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHh
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYR 24 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g 24 (238)
+-++|+|++|+|||||++.+.+
T Consensus 30 ~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHHCS
T ss_pred cEEEEECCCCCCHHHHHHHHHh
Confidence 6789999999999999999864
No 465
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=96.56 E-value=0.0068 Score=49.44 Aligned_cols=42 Identities=24% Similarity=0.274 Sum_probs=33.0
Q ss_pred CCeeEEEEc-CCCCcHHHHHHHHHhCCcCCCceEEEeeecCCC
Q 026486 1 MGYAQLVIG-PAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA 42 (238)
Q Consensus 1 ~~~~v~IiG-pnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~ 42 (238)
|.-+++|.| ..|+||||+.-.++..+...+.+|.+.+.|+..
T Consensus 1 M~~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~ 43 (237)
T 1g3q_A 1 MGRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLTM 43 (237)
T ss_dssp CCEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTS
T ss_pred CceEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCCC
Confidence 544566654 568999999999999887666689999888853
No 466
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=96.54 E-value=0.0012 Score=56.65 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=21.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l 26 (238)
..++|+|+.|||||||++.|.|.-
T Consensus 25 ~~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 25 PQIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp CEEEEEECSSSSHHHHHHHHHTSC
T ss_pred CeEEEEcCCCCCHHHHHHHHHCCC
Confidence 358999999999999999999974
No 467
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=96.53 E-value=0.0017 Score=52.92 Aligned_cols=34 Identities=26% Similarity=0.368 Sum_probs=26.2
Q ss_pred CCeeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEE
Q 026486 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI 35 (238)
Q Consensus 1 ~~~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i 35 (238)
|.-.+++=|+-||||||.++.|+..+.. +..+..
T Consensus 1 M~kFI~~EG~dGsGKsTq~~~L~~~L~~-~~~v~~ 34 (205)
T 4hlc_A 1 MSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIM 34 (205)
T ss_dssp -CEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEE
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHC-CCCEEE
Confidence 6556779999999999999999998853 344443
No 468
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=96.53 E-value=0.0014 Score=52.39 Aligned_cols=23 Identities=13% Similarity=0.300 Sum_probs=20.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~ 25 (238)
+-++|+|++|+|||||++.+.+-
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 56899999999999999999873
No 469
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=96.52 E-value=0.0014 Score=53.05 Aligned_cols=22 Identities=18% Similarity=0.383 Sum_probs=20.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHh
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYR 24 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g 24 (238)
+-++|+|++|+|||||++.+.+
T Consensus 35 ~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEEECTTSSHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 6689999999999999999986
No 470
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.52 E-value=0.0013 Score=59.37 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=21.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l 26 (238)
.++.|+|++||||||+.+.++..+
T Consensus 259 ~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CEEEEESCTTSSHHHHHHHHTGGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHhc
Confidence 578899999999999999998743
No 471
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=96.52 E-value=0.0015 Score=52.51 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=21.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l 26 (238)
+-++|+|+.|+|||||++.+.+-.
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 568999999999999999998753
No 472
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=96.52 E-value=0.00087 Score=52.26 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=10.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHh
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYR 24 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g 24 (238)
+-++|+|++|+|||||++.+.+
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EEEEEECCCCC-----------
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 5689999999999999988865
No 473
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.52 E-value=0.0061 Score=63.85 Aligned_cols=34 Identities=21% Similarity=0.336 Sum_probs=28.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEee
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN 37 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~ 37 (238)
.+.|.||+|+|||||+..++......++.+.+..
T Consensus 734 lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS 767 (1706)
T 3cmw_A 734 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 767 (1706)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred eEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEe
Confidence 6889999999999999999887766666676654
No 474
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.51 E-value=0.014 Score=50.07 Aligned_cols=24 Identities=25% Similarity=0.299 Sum_probs=20.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l 26 (238)
..+.+-||+|+||||++++++..+
T Consensus 49 ~~~L~~G~~G~GKT~la~~la~~l 72 (324)
T 3u61_B 49 HIILHSPSPGTGKTTVAKALCHDV 72 (324)
T ss_dssp SEEEECSSTTSSHHHHHHHHHHHT
T ss_pred eEEEeeCcCCCCHHHHHHHHHHHh
Confidence 345677889999999999999876
No 475
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=96.50 E-value=0.0017 Score=51.61 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=21.6
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCC
Q 026486 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (238)
Q Consensus 2 ~~~v~IiGpnGSGKSTLl~~l~g~l 26 (238)
.+-++++|++|+|||||++.+.+-.
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHSCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhcC
Confidence 3668999999999999999888743
No 476
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=96.49 E-value=0.01 Score=50.98 Aligned_cols=40 Identities=18% Similarity=0.228 Sum_probs=33.1
Q ss_pred eeEEEEcC-CCCcHHHHHHHHHhCCcCCCceEEEeeecCCC
Q 026486 3 YAQLVIGP-AGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA 42 (238)
Q Consensus 3 ~~v~IiGp-nGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~ 42 (238)
-+++|.|+ .|+||||+...|+..+...+.+|.+.+.|+..
T Consensus 105 kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~r~ 145 (299)
T 3cio_A 105 NILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRR 145 (299)
T ss_dssp CEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEECCTTT
T ss_pred eEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEECCCCC
Confidence 36788887 69999999999998887666689999988854
No 477
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.48 E-value=0.0014 Score=54.64 Aligned_cols=23 Identities=22% Similarity=0.444 Sum_probs=20.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCC
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l 26 (238)
-.+|+|++||||||.++.|+..+
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHHHh
Confidence 47999999999999999998754
No 478
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=96.48 E-value=0.0018 Score=53.34 Aligned_cols=24 Identities=33% Similarity=0.362 Sum_probs=22.1
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhC
Q 026486 2 GYAQLVIGPAGSGKSTYCSSLYRH 25 (238)
Q Consensus 2 ~~~v~IiGpnGSGKSTLl~~l~g~ 25 (238)
.|.+|++|.-||||||.++.+..+
T Consensus 9 ~~~iglTGgigsGKStv~~~l~~~ 32 (210)
T 4i1u_A 9 MYAIGLTGGIGSGKTTVADLFAAR 32 (210)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHT
T ss_pred eeEEEEECCCCCCHHHHHHHHHHC
Confidence 489999999999999999999873
No 479
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.47 E-value=0.0017 Score=51.18 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=20.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~ 25 (238)
+-++++|+.|+|||||++.+.+-
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 56899999999999999999874
No 480
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=96.45 E-value=0.0018 Score=51.90 Aligned_cols=23 Identities=22% Similarity=0.284 Sum_probs=20.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~ 25 (238)
+-++++|++|+|||||++.+.+-
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 67899999999999999998853
No 481
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.43 E-value=0.0022 Score=56.51 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=22.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCc
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCE 27 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~ 27 (238)
-.++|+||.|||||||...|+..+.
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCC
Confidence 3789999999999999999998763
No 482
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.41 E-value=0.0018 Score=53.64 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=22.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCc
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCE 27 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~ 27 (238)
..++|.|+.||||||+++.|+..++
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 4688999999999999999998874
No 483
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.41 E-value=0.012 Score=62.62 Aligned_cols=118 Identities=16% Similarity=0.181 Sum_probs=62.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCCCCCCCCCCCCChhhhhhHHHHHHHcCCCCCCchhhhHHhhh
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~~~ 82 (238)
..+.+.||+|||||||...+.---...++++.+...+-. ..+.. ++.+|.....-....-+ .
T Consensus 1082 ~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee~-----------~~~L~-----a~~~G~dl~~l~~~~pd-~- 1143 (2050)
T 3cmu_A 1082 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA-----------LDPIY-----ARKLGVDIDNLLCSQPD-T- 1143 (2050)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSC-----------CCHHH-----HHHTTCCTTTCEEECCS-S-
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEcccc-----------HHHHH-----HHHcCCChhHheeecCc-c-
Confidence 468899999999999998877544444666666543211 11111 23444332110000000 0
Q ss_pred hhHHHHHHHHHhccCCCCEEEEeCCCcccHHhH-----------------HHHHHHHHHHHHhCCCeEEEEEe
Q 026486 83 DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTH-----------------VPVLRNFVDHLKSRNFNVCAVYL 138 (238)
Q Consensus 83 ~~~s~~la~~l~~~~~p~~lilDEPt~LD~~~~-----------------~~~~~~ll~~l~~~~~tvi~v~l 138 (238)
+.....+...+.....|+++++|+-+.+.+... ++.+.+++..+.+++.+++++..
T Consensus 1144 ~e~~~~i~~~l~~~~~~dlvVIDsl~~L~~~~e~~~~~g~~~~gl~aR~~~~~L~~L~~~l~e~~stiI~tN~ 1216 (2050)
T 3cmu_A 1144 GEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ 1216 (2050)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred hHHHHHHHHHHHHhCCCCEEEECCcccccccccccccccccchhHHHHHHHHHHHHHHHHHHhCCeEEEEecC
Confidence 011133334444333799999999776533221 12222666666667777777653
No 484
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=96.41 E-value=0.0016 Score=53.62 Aligned_cols=28 Identities=21% Similarity=0.252 Sum_probs=24.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVR 30 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~ 30 (238)
..+++-|+.||||||.++.+...++..+
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~ 31 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQLG 31 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 5688999999999999999999987654
No 485
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=96.40 E-value=0.00073 Score=54.50 Aligned_cols=23 Identities=35% Similarity=0.629 Sum_probs=20.3
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHh
Q 026486 2 GYAQLVIGPAGSGKSTYCSSLYR 24 (238)
Q Consensus 2 ~~~v~IiGpnGSGKSTLl~~l~g 24 (238)
.+-++|+|++|+|||||++.+.+
T Consensus 11 ~~ki~vvG~~~~GKSsli~~l~~ 33 (218)
T 4djt_A 11 TYKICLIGDGGVGKTTYINRVLD 33 (218)
T ss_dssp EEEEEEECCTTSSHHHHHCBCTT
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 36789999999999999988875
No 486
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=96.40 E-value=0.002 Score=51.55 Aligned_cols=23 Identities=17% Similarity=0.371 Sum_probs=20.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~ 25 (238)
+-++|+|++|+|||||++.+.+-
T Consensus 30 ~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 30 FKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhhC
Confidence 56899999999999999999764
No 487
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=96.40 E-value=0.0019 Score=54.51 Aligned_cols=23 Identities=35% Similarity=0.535 Sum_probs=21.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~ 25 (238)
+-++++|++|+|||||++.+.|-
T Consensus 40 ~~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 40 LTILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999999974
No 488
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=96.39 E-value=0.002 Score=54.57 Aligned_cols=24 Identities=29% Similarity=0.392 Sum_probs=21.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCc
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCE 27 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~ 27 (238)
.++++|.+|+|||||++.+.|-..
T Consensus 101 ~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 101 RVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTCC
T ss_pred heEEeCCCCCCHHHHHHHHhcccc
Confidence 689999999999999999997543
No 489
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=96.39 E-value=0.0015 Score=60.71 Aligned_cols=26 Identities=19% Similarity=0.247 Sum_probs=22.9
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCCc
Q 026486 2 GYAQLVIGPAGSGKSTYCSSLYRHCE 27 (238)
Q Consensus 2 ~~~v~IiGpnGSGKSTLl~~l~g~l~ 27 (238)
+.++.++|.+||||||+.+.|+..+.
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~ 60 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLN 60 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 56889999999999999999987654
No 490
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.38 E-value=0.0016 Score=54.49 Aligned_cols=30 Identities=20% Similarity=0.154 Sum_probs=25.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCce
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRT 32 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~ 32 (238)
..+++.|++||||||+++.|...+...+-+
T Consensus 28 ~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~ 57 (236)
T 3lv8_A 28 KFIVIEGLEGAGKSTAIQVVVETLQQNGID 57 (236)
T ss_dssp CEEEEEESTTSCHHHHHHHHHHHHHHTTCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCCC
Confidence 568899999999999999999988764433
No 491
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.38 E-value=0.0044 Score=60.87 Aligned_cols=33 Identities=24% Similarity=0.393 Sum_probs=27.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEe
Q 026486 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV 36 (238)
Q Consensus 4 ~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~ 36 (238)
.+.+.||+|+|||++++.++..+...++.+...
T Consensus 590 ~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i 622 (854)
T 1qvr_A 590 SFLFLGPTGVGKTELAKTLAATLFDTEEAMIRI 622 (854)
T ss_dssp EEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEE
Confidence 578999999999999999999887655555444
No 492
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.36 E-value=0.0012 Score=55.42 Aligned_cols=25 Identities=32% Similarity=0.477 Sum_probs=22.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCc
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCE 27 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~ 27 (238)
..++|.|+.||||||+++.|+..+.
T Consensus 25 ~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 25 KKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp EEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5688999999999999999998874
No 493
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=96.36 E-value=0.0012 Score=51.81 Aligned_cols=22 Identities=23% Similarity=0.292 Sum_probs=19.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHh
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYR 24 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g 24 (238)
+-++++|++|+|||||++.+.+
T Consensus 23 ~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 23 IRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp EEEEEEEETTSSHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 6689999999999999999854
No 494
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=96.36 E-value=0.0087 Score=47.56 Aligned_cols=41 Identities=22% Similarity=0.297 Sum_probs=31.6
Q ss_pred CCeeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeeecCC
Q 026486 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA 41 (238)
Q Consensus 1 ~~~~v~IiGpnGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~ 41 (238)
|+.+...-+..|+||||+.-.++..+...+.+|.+.+.|+.
T Consensus 1 M~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~ 41 (206)
T 4dzz_A 1 MKVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQ 41 (206)
T ss_dssp CEEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 54443334778899999999999988776668999888864
No 495
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=96.34 E-value=0.0053 Score=52.12 Aligned_cols=40 Identities=23% Similarity=0.218 Sum_probs=33.0
Q ss_pred eeEEEEcC-CCCcHHHHHHHHHhCCcCCCceEEEeeecCCC
Q 026486 3 YAQLVIGP-AGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA 42 (238)
Q Consensus 3 ~~v~IiGp-nGSGKSTLl~~l~g~l~~~~G~i~i~~~d~~~ 42 (238)
-+++|.|+ .|.||||+...|+..+...+.+|.+.+.|+..
T Consensus 83 kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D~~~ 123 (271)
T 3bfv_A 83 QSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDMRK 123 (271)
T ss_dssp CEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCSSS
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence 35778876 78999999999998887666689999988765
No 496
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.33 E-value=0.0053 Score=59.94 Aligned_cols=25 Identities=24% Similarity=0.457 Sum_probs=22.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCc
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHCE 27 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l~ 27 (238)
-++.+.||+|+|||||.+++++.+.
T Consensus 239 ~GILL~GPPGTGKT~LAraiA~elg 263 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp CEEEEECCTTSCHHHHHHHHHTTTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999998753
No 497
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=96.32 E-value=0.0024 Score=51.86 Aligned_cols=23 Identities=30% Similarity=0.580 Sum_probs=20.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~ 25 (238)
+-++|+|+.|+|||||++.+.+-
T Consensus 14 ~ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 14 FKIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEEESCTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 56899999999999999999874
No 498
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=96.32 E-value=0.0024 Score=52.19 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=20.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~ 25 (238)
+-++|+|++|+|||||++.+.|.
T Consensus 38 ~kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 38 YRVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 56899999999999999999863
No 499
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=96.31 E-value=0.0025 Score=51.60 Aligned_cols=24 Identities=17% Similarity=0.315 Sum_probs=21.4
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhC
Q 026486 2 GYAQLVIGPAGSGKSTYCSSLYRH 25 (238)
Q Consensus 2 ~~~v~IiGpnGSGKSTLl~~l~g~ 25 (238)
.+-++|+|++|+|||||++.+.+-
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 467899999999999999999873
No 500
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.31 E-value=0.0021 Score=55.11 Aligned_cols=24 Identities=29% Similarity=0.485 Sum_probs=21.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCC
Q 026486 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (238)
Q Consensus 3 ~~v~IiGpnGSGKSTLl~~l~g~l 26 (238)
-++.+.||+|+|||+++++++..+
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 357788999999999999999876
Done!