BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 026487
         (238 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2HUO|A Chain A, Crystal Structure Of Mouse Myo-Inositol Oxygenase In
           Complex With Substrate
 pdb|3BXD|A Chain A, Crystal Structure Of Mouse Myo-Inositol Oxygenase
           (Re-Refined)
          Length = 289

 Score =  186 bits (471), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 92/193 (47%), Positives = 125/193 (64%), Gaps = 5/193 (2%)

Query: 35  PQTNSFGHTFRDYDAEGERQEGVENFYRINHINQTYDFVKKMREEYGKLNRVEMSIWECC 94
           P+      +FR+Y   G   + V   Y++ H +QT DFV + R +YG  +  +M+I E  
Sbjct: 23  PEMAKSKDSFRNY-TSGPLLDRVFTTYKLMHTHQTVDFVSRKRIQYGSFSYKKMTIMEAV 81

Query: 95  ELLNDVVDESDPDLDEPQIEHLLQTAEAIRKDYPDEDWLHLTGLIHDLGKVLNLPSFGGL 154
            +L+D+VDESDPD+D P   H  QTAE IRK +PD+DW HL GL+HDLGK++ L    G 
Sbjct: 82  GMLDDLVDESDPDVDFPNSFHAFQTAEGIRKAHPDKDWFHLVGLLHDLGKIMAL---WGE 138

Query: 155 PQWAVVGDTFPVGCAFDESIVH-HKYFKENPDYSNPAFNTEYGVYSEGCGLDNVMMSWGH 213
           PQWAVVGDTFPVGC    S+V     F++NPD  +P ++TE G+Y   CGL+NV+MSWGH
Sbjct: 139 PQWAVVGDTFPVGCRPQASVVFCDSTFQDNPDLQDPRYSTELGMYQPHCGLENVLMSWGH 198

Query: 214 DDYMYLVKNLQAF 226
           D+Y+Y +     F
Sbjct: 199 DEYLYQMMKFNKF 211


>pdb|2IBN|A Chain A, Crystal Structure Of Human Myo-Inositol Oxygenase (Miox)
          Length = 246

 Score =  161 bits (407), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 82/167 (49%), Positives = 106/167 (63%), Gaps = 7/167 (4%)

Query: 61  YRINHINQTYDFVKKMREEYGKLNRVEMSIWECCELLNDVVDESDPDLDEPQIEHLLQTA 120
           Y++ H +QT DFV+    ++G  +  + ++ E  +LL+ +VDESD   D P   H  QTA
Sbjct: 9   YKLXHTHQTVDFVRSKHAQFGGFSYKKXTVXEAVDLLDGLVDESD---DFPNSFHAFQTA 65

Query: 121 EAIRKDYPDEDWLHLTGLIHDLGKVLNLPSFGGLPQWAVVGDTFPVGCAFDESIVH-HKY 179
           E IRK +PD+DW HL GL+HDLGKVL L    G PQWAVVGDTFPVGC    S+V     
Sbjct: 66  EGIRKAHPDKDWFHLVGLLHDLGKVLAL---FGEPQWAVVGDTFPVGCRPQASVVFCDST 122

Query: 180 FKENPDYSNPAFNTEYGVYSEGCGLDNVMMSWGHDDYMYLVKNLQAF 226
           F++NPD  +P ++TE G Y   CGLD V+ SWGHD+Y Y V     F
Sbjct: 123 FQDNPDLQDPRYSTELGXYQPHCGLDRVLXSWGHDEYXYQVXKFNKF 169


>pdb|2IBN|B Chain B, Crystal Structure Of Human Myo-Inositol Oxygenase (Miox)
          Length = 240

 Score =  157 bits (397), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 80/167 (47%), Positives = 104/167 (62%), Gaps = 10/167 (5%)

Query: 61  YRINHINQTYDFVKKMREEYGKLNRVEMSIWECCELLNDVVDESDPDLDEPQIEHLLQTA 120
           Y++ H +QT DFV+    ++G  +  + ++ E  +LL+ +VDES      P   H  QTA
Sbjct: 9   YKLXHTHQTVDFVRSKHAQFGGFSYKKXTVXEAVDLLDGLVDES------PNSFHAFQTA 62

Query: 121 EAIRKDYPDEDWLHLTGLIHDLGKVLNLPSFGGLPQWAVVGDTFPVGCAFDESIVH-HKY 179
           E IRK +PD+DW HL GL+HDLGKVL L    G PQWAVVGDTFPVGC    S+V     
Sbjct: 63  EGIRKAHPDKDWFHLVGLLHDLGKVLAL---FGEPQWAVVGDTFPVGCRPQASVVFCDST 119

Query: 180 FKENPDYSNPAFNTEYGVYSEGCGLDNVMMSWGHDDYMYLVKNLQAF 226
           F++NPD  +P ++TE G Y   CGLD V+ SWGHD+Y Y V     F
Sbjct: 120 FQDNPDLQDPRYSTELGXYQPHCGLDRVLXSWGHDEYXYQVXKFNKF 166


>pdb|2GT1|A Chain A, E. Coli Heptosyltransferase Waac.
 pdb|2GT1|B Chain B, E. Coli Heptosyltransferase Waac
          Length = 326

 Score = 27.7 bits (60), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 11/25 (44%), Positives = 15/25 (60%)

Query: 125 KDYPDEDWLHLTGLIHDLGKVLNLP 149
           K +P+E W  L GL+ D G  + LP
Sbjct: 192 KHWPEEHWRELIGLLADSGIRIKLP 216


>pdb|2H1F|A Chain A, E. Coli Heptosyltransferase Waac With Adp
 pdb|2H1F|B Chain B, E. Coli Heptosyltransferase Waac With Adp
 pdb|2H1H|A Chain A, E. Coli Heptosyltransferase Waac With Adp-2-Deoxy-2-Fluoro
           Heptose
 pdb|2H1H|B Chain B, E. Coli Heptosyltransferase Waac With Adp-2-Deoxy-2-Fluoro
           Heptose
          Length = 334

 Score = 27.7 bits (60), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 11/25 (44%), Positives = 15/25 (60%)

Query: 125 KDYPDEDWLHLTGLIHDLGKVLNLP 149
           K +P+E W  L GL+ D G  + LP
Sbjct: 192 KHWPEEHWRELIGLLADSGIRIKLP 216


>pdb|1R5X|A Chain A, Jamm: A Metalloprotease-Like Zinc Site In The Proteasome
           And Signalosome
 pdb|1R5X|B Chain B, Jamm: A Metalloprotease-Like Zinc Site In The Proteasome
           And Signalosome
          Length = 133

 Score = 26.9 bits (58), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 1/84 (1%)

Query: 116 LLQTA-EAIRKDYPDEDWLHLTGLIHDLGKVLNLPSFGGLPQWAVVGDTFPVGCAFDESI 174
           LL+T  EA +  +PDE    L+G    + +++ LP   G     +  D  P+G     ++
Sbjct: 19  LLKTILEAAKSAHPDEFIALLSGSKDVMDELIFLPFVSGSVSAVIHLDMLPIGMKVFGTV 78

Query: 175 VHHKYFKENPDYSNPAFNTEYGVY 198
             H      P   + +  T +G Y
Sbjct: 79  HSHPSPSCRPSEEDLSLFTRFGKY 102


>pdb|1DT6|A Chain A, Structure Of Mammalian Cytochrome P450 2c5
 pdb|1N6B|A Chain A, Microsomal Cytochrome P450 2c5/3lvdh Complex With A
           Dimethyl Derivative Of Sulfaphenazole
 pdb|1NR6|A Chain A, Microsomal Cytochrome P450 2c53LVDH COMPLEX WITH
           DICLOFENAC
          Length = 473

 Score = 26.9 bits (58), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 9/63 (14%)

Query: 124 RKDYPDEDWLHLTGLIHDLGKVLNLPSFGGLPQWAVVGDTFPVGCAFDESIVHHKYFKEN 183
           R DY DE++L L   +H+  ++L  P       W  V + FP    +   I  HK   +N
Sbjct: 168 RFDYKDEEFLKLMESLHENVELLGTP-------WLQVYNNFPALLDYFPGI--HKTLLKN 218

Query: 184 PDY 186
            DY
Sbjct: 219 ADY 221


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.140    0.436 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,543,979
Number of Sequences: 62578
Number of extensions: 399662
Number of successful extensions: 955
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 940
Number of HSP's gapped (non-prelim): 11
length of query: 238
length of database: 14,973,337
effective HSP length: 96
effective length of query: 142
effective length of database: 8,965,849
effective search space: 1273150558
effective search space used: 1273150558
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)