Query 026487
Match_columns 238
No_of_seqs 127 out of 204
Neff 3.5
Searched_HMMs 46136
Date Fri Mar 29 08:38:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026487.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026487hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05153 DUF706: Family of unk 100.0 4E-107 9E-112 724.3 9.4 181 53-235 4-192 (253)
2 KOG1573 Aldehyde reductase [Ge 100.0 2.2E-98 5E-103 642.4 10.2 191 28-221 12-204 (204)
3 TIGR03276 Phn-HD phosphonate d 97.2 0.00029 6.2E-09 61.4 2.9 55 92-147 6-60 (179)
4 TIGR00488 putative HD superfam 94.1 0.019 4.1E-07 47.3 0.7 38 109-146 6-47 (158)
5 TIGR00277 HDIG uncharacterized 92.0 0.14 3E-06 35.5 2.5 34 113-146 6-43 (80)
6 PF01966 HD: HD domain; Inter 91.1 0.037 8E-07 40.6 -1.2 35 113-147 2-42 (122)
7 smart00471 HDc Metal dependent 90.2 0.07 1.5E-06 38.2 -0.5 39 110-148 3-46 (124)
8 COG4341 Predicted HD phosphohy 89.7 0.31 6.7E-06 43.2 3.0 46 101-147 20-65 (186)
9 TIGR01596 cas3_HD CRISPR-assoc 88.0 0.13 2.9E-06 41.4 -0.4 33 114-146 3-47 (177)
10 PRK00106 hypothetical protein; 85.8 0.54 1.2E-05 47.2 2.5 55 91-147 332-390 (535)
11 COG2316 Predicted hydrolase (H 84.6 0.61 1.3E-05 41.7 2.0 56 86-147 28-87 (212)
12 TIGR03319 YmdA_YtgF conserved 84.2 0.75 1.6E-05 45.7 2.6 54 91-146 311-368 (514)
13 PF08668 HDOD: HDOD domain; I 83.7 1.4 3.1E-05 36.4 3.7 69 80-148 47-136 (196)
14 cd00077 HDc Metal dependent ph 83.5 0.28 6E-06 35.5 -0.5 35 112-146 3-44 (145)
15 PF15608 PELOTA_1: PELOTA RNA 81.2 4.7 0.0001 32.6 5.7 55 64-122 16-78 (100)
16 PRK12703 tRNA 2'-O-methylase; 72.7 2.9 6.3E-05 39.9 2.7 60 81-147 163-227 (339)
17 PRK07152 nadD putative nicotin 71.2 1.7 3.6E-05 40.3 0.7 35 112-146 197-235 (342)
18 PRK12705 hypothetical protein; 69.4 3.3 7.1E-05 41.6 2.3 35 112-146 324-362 (508)
19 TIGR00295 conserved hypothetic 69.0 2 4.4E-05 36.0 0.7 36 112-147 14-58 (164)
20 PRK05007 PII uridylyl-transfer 64.6 13 0.00028 39.3 5.6 34 111-144 461-512 (884)
21 TIGR02621 cas3_GSU0051 CRISPR- 63.8 3.6 7.7E-05 43.7 1.4 34 113-146 677-716 (844)
22 PRK10885 cca multifunctional t 58.9 3.5 7.6E-05 39.7 0.3 57 89-146 195-261 (409)
23 PRK12704 phosphodiesterase; Pr 57.1 9.1 0.0002 38.2 2.8 53 92-146 318-374 (520)
24 PRK05092 PII uridylyl-transfer 51.4 5.2 0.00011 42.2 0.1 56 89-144 462-544 (931)
25 PRK13480 3'-5' exoribonuclease 48.0 7.6 0.00016 36.5 0.7 34 115-148 166-201 (314)
26 TIGR03760 ICE_TraI_Pfluor inte 47.0 8.6 0.00019 34.3 0.8 15 133-147 108-122 (218)
27 PRK03381 PII uridylyl-transfer 46.5 8.2 0.00018 40.1 0.7 35 111-145 420-457 (774)
28 COG2206 c-di-GMP phosphodieste 46.2 10 0.00022 35.3 1.2 43 101-147 142-191 (344)
29 COG3481 Predicted HD-superfami 44.9 15 0.00032 34.7 2.0 51 114-165 147-199 (287)
30 COG0647 NagD Predicted sugar p 42.4 1.3E+02 0.0028 27.9 7.7 97 84-203 48-171 (269)
31 PRK00275 glnD PII uridylyl-tra 38.7 12 0.00026 39.6 0.5 36 110-145 459-512 (895)
32 PF13328 HD_4: HD domain; PDB: 38.7 14 0.00029 30.2 0.7 36 106-142 14-49 (153)
33 KOG3442 Uncharacterized conser 38.4 1.5E+02 0.0032 25.4 6.8 60 56-121 19-88 (132)
34 PRK08071 L-aspartate oxidase; 37.4 48 0.001 32.4 4.3 73 73-146 415-508 (510)
35 PRK04374 PII uridylyl-transfer 37.0 18 0.00038 38.4 1.4 35 110-144 448-500 (869)
36 PRK01759 glnD PII uridylyl-tra 36.2 15 0.00032 38.7 0.7 35 110-144 435-487 (854)
37 PTZ00100 DnaJ chaperone protei 35.6 1.2E+02 0.0026 25.1 5.7 52 71-129 41-96 (116)
38 COG1418 Predicted HD superfami 35.3 29 0.00063 30.9 2.3 36 113-148 38-77 (222)
39 PRK00227 glnD PII uridylyl-tra 34.9 16 0.00035 38.0 0.7 36 111-146 380-418 (693)
40 COG1023 Gnd Predicted 6-phosph 34.2 58 0.0013 31.0 4.1 62 86-160 178-251 (300)
41 PF12477 TraW_N: Sex factor F 33.1 16 0.00034 23.9 0.2 10 158-167 22-31 (31)
42 TIGR01693 UTase_glnD [Protein- 32.5 10 0.00022 39.5 -1.2 33 113-145 430-480 (850)
43 PRK03059 PII uridylyl-transfer 32.0 22 0.00047 37.6 1.1 34 111-144 440-491 (856)
44 PF05964 FYRN: F/Y-rich N-term 31.6 19 0.00041 25.4 0.4 27 138-169 5-31 (54)
45 PRK14068 exodeoxyribonuclease 30.9 82 0.0018 24.1 3.8 39 86-124 4-43 (76)
46 COG2069 CdhD CO dehydrogenase/ 30.7 2.4E+02 0.0051 27.8 7.6 90 32-122 115-226 (403)
47 TIGR03401 cyanamide_fam HD dom 29.7 25 0.00053 31.6 0.9 39 108-146 55-98 (228)
48 PF03656 Pam16: Pam16; InterP 29.6 52 0.0011 27.5 2.8 31 85-120 52-86 (127)
49 TIGR01346 isocit_lyase isocitr 28.4 27 0.00058 35.6 1.0 40 107-146 386-441 (527)
50 PRK14064 exodeoxyribonuclease 27.9 1E+02 0.0022 23.5 3.9 41 85-125 3-44 (75)
51 PF06784 UPF0240: Uncharacteri 27.7 64 0.0014 28.2 3.1 34 83-127 113-146 (179)
52 TIGR02578 cas_TM1811_Csm1 CRIS 27.1 21 0.00045 36.7 -0.0 14 134-147 2-15 (648)
53 TIGR00691 spoT_relA (p)ppGpp s 27.0 45 0.00097 34.5 2.3 35 108-144 16-51 (683)
54 TIGR02692 tRNA_CCA_actino tRNA 26.2 39 0.00085 32.8 1.7 38 110-147 257-296 (466)
55 cd01282 HTH_MerR-like_sg3 Heli 25.9 2.9E+02 0.0064 21.6 6.3 63 31-117 24-86 (112)
56 PRK14067 exodeoxyribonuclease 25.2 1.2E+02 0.0026 23.5 3.9 39 85-123 4-43 (80)
57 COG4198 Uncharacterized conser 25.2 48 0.001 32.7 2.0 32 112-143 370-405 (405)
58 PF10809 DUF2732: Protein of u 24.6 2.1E+02 0.0045 22.3 5.1 62 38-99 3-64 (77)
59 COG0132 BioD Dethiobiotin synt 24.1 58 0.0013 29.4 2.2 21 107-127 144-164 (223)
60 PRK13298 tRNA CCA-pyrophosphor 23.9 20 0.00043 35.3 -0.8 36 111-147 228-263 (417)
61 KOG2659 LisH motif-containing 23.7 81 0.0018 29.0 3.1 37 89-127 79-118 (228)
62 COG1639 Predicted signal trans 23.2 76 0.0016 30.0 2.9 73 76-148 65-158 (289)
63 PRK11092 bifunctional (p)ppGpp 22.4 93 0.002 32.5 3.6 53 90-144 23-76 (702)
64 COG1713 Predicted HD superfami 22.3 58 0.0013 29.1 1.9 39 108-146 14-56 (187)
65 PF07514 TraI_2: Putative heli 21.8 27 0.00058 32.9 -0.4 51 97-147 49-121 (327)
66 PRK10119 putative hydrolase; P 21.3 1E+02 0.0022 27.9 3.2 46 99-144 16-62 (231)
67 PF11884 DUF3404: Domain of un 21.1 50 0.0011 31.0 1.2 79 53-146 12-117 (262)
68 COG3437 Response regulator con 21.0 1.9E+02 0.0041 28.4 5.2 56 90-146 168-227 (360)
69 COG1099 Predicted metal-depend 20.9 99 0.0022 29.0 3.1 60 67-127 167-233 (254)
70 PRK07094 biotin synthase; Prov 20.6 1.7E+02 0.0036 26.5 4.5 32 88-127 1-32 (323)
No 1
>PF05153 DUF706: Family of unknown function (DUF706) ; InterPro: IPR007828 Inositol oxygenase (1.13.99.1 from EC) is involved in the biosynthesis of UDP-glucuronic acid (UDP-GlcA), providing nucleotide sugars for cell-wall polymers. It may be also involved in plant ascorbate biosynthesis [, ].; GO: 0005506 iron ion binding, 0050113 inositol oxygenase activity, 0019310 inositol catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 2HUO_A 3BXD_A 2IBN_A.
Probab=100.00 E-value=4e-107 Score=724.27 Aligned_cols=181 Identities=65% Similarity=1.139 Sum_probs=147.4
Q ss_pred hhHHHHHHHHHhhhhhHHHHHHHHHHHhcCCCCccccHHHHHHHhhhhcCCCCCCCChHHHHHHHHHHHHHHhcCCCCCc
Q 026487 53 RQEGVENFYRINHINQTYDFVKKMREEYGKLNRVEMSIWECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRKDYPDEDW 132 (238)
Q Consensus 53 r~~~V~~fY~~~H~~QTvdfv~~~~~~~~~~~~~~MsI~EA~e~Ln~lVDeSDPD~dlpqi~H~lQTAEaiR~d~p~pDW 132 (238)
|+++|++|||+||++||||||++||++|++++|++|||||||++||+||||||||+|+|||+||||||||||+|||+|||
T Consensus 4 ~~~~V~~~Y~~~h~~QTv~fv~~~~~~~~~~~~~~Mti~eA~~~L~~LvDeSDPD~d~~~i~H~lQTAEaiR~d~~~~dW 83 (253)
T PF05153_consen 4 ACDRVKEFYRLQHTNQTVDFVKKMRAKYLKFDHAEMTIWEALELLNTLVDESDPDTDLPQIQHALQTAEAIRRDHPDPDW 83 (253)
T ss_dssp -HHHHHHHHHHHHCC--HHHHHHHHHHHTT--SEEE-HHHHHHHGGG---TT-TT--S-HHHHHHHHHHHHHHHSTT-HH
T ss_pred HhHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCcceeeHHHHHHHHHHhccCccCCCchhHHHHHHHHHHHHHHhCCCcch
Confidence 56779999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceehhceeccccccccCCCCCCCCeeeecCceeeccccCCCcccccccccCCCCCCCCccccCccccCCCCccccccccc
Q 026487 133 LHLTGLIHDLGKVLNLPSFGGLPQWAVVGDTFPVGCAFDESIVHHKYFKENPDYSNPAFNTEYGVYSEGCGLDNVMMSWG 212 (238)
Q Consensus 133 ~qLtGliHDLGKvl~~p~fg~~~QWavvGdTfpVGC~f~~~iv~~e~f~~NpD~~~p~ynt~~GiY~~~CGLdnv~mSWG 212 (238)
||||||||||||||++ |+++|||+||||||||||+|+++|||+++|++|||.+||+||||+|||+||||||||+||||
T Consensus 84 ~~LtGLiHDLGKvl~~--~~~e~QW~vvGDTfpVGC~f~~~iv~~e~f~~NpD~~~~~YnTk~GiY~~~CGLdnv~msWg 161 (253)
T PF05153_consen 84 MQLTGLIHDLGKVLAL--FGGEPQWAVVGDTFPVGCAFSESIVFPEFFKDNPDSKNPRYNTKYGIYEPNCGLDNVMMSWG 161 (253)
T ss_dssp HHHHHHHTTGGGHHHH--C-T--GGGTSS---BSSS---TTSTTCCC-TT-GGGCSTTTSSSSTT--TT--GGGS-B-SS
T ss_pred hhheehhccchhhhhh--hcCCCCceeecCceeEecccCccccChhhHhhCCCCCCccccCCCCccCCCCCccceeecCC
Confidence 9999999999999999 98999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHH--------HHHhHhhhccccc
Q 026487 213 HDDYMYLVKN--------LQAFIKSYFSILL 235 (238)
Q Consensus 213 HDEYlY~Vlk--------eaL~mIRyHSFYp 235 (238)
||||||+||| |||+|||||||||
T Consensus 162 HDEYlY~Vlk~n~~tLP~eaL~mIRyhSfyp 192 (253)
T PF05153_consen 162 HDEYLYQVLKHNKSTLPEEALYMIRYHSFYP 192 (253)
T ss_dssp HHHHHHHHHHHCT----HHHHHHHHHTT-HH
T ss_pred chHHHHHHHHcccCccCHHHHHHHHHhcccc
Confidence 9999999999 9999999999998
No 2
>KOG1573 consensus Aldehyde reductase [General function prediction only]
Probab=100.00 E-value=2.2e-98 Score=642.44 Aligned_cols=191 Identities=72% Similarity=1.288 Sum_probs=184.7
Q ss_pred ecCCCCCCCCccccccCCCCcc-chhhhHHHHHHHHHhhhhhHHHHHHHHHHHhcCCCCccccHHHHHHHhhhhcCCCCC
Q 026487 28 LDGGFLVPQTNSFGHTFRDYDA-EGERQEGVENFYRINHINQTYDFVKKMREEYGKLNRVEMSIWECCELLNDVVDESDP 106 (238)
Q Consensus 28 ldg~f~~P~~n~~~~~FR~Y~~-~~~r~~~V~~fY~~~H~~QTvdfv~~~~~~~~~~~~~~MsI~EA~e~Ln~lVDeSDP 106 (238)
.|--|+.|+.|+++.+||+|++ +++||+||+.||+.||+|||||||++||++|+||++.+||||||||+||++||||||
T Consensus 12 v~e~~~~pe~~a~g~~fRdY~dt~~p~q~rV~~~Y~~qH~~QTvDFVk~mr~~~gkf~~~kM~i~ec~ell~~~vDESDP 91 (204)
T KOG1573|consen 12 VDEPFVAPEVNADGRQFRDYDDTEDPLQKRVRTTYRTQHTNQTVDFVKKMRAEYGKFDKMKMTIWECCELLNEVVDESDP 91 (204)
T ss_pred ccCCCCChhhhcchhhhccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcccchhheeHHHHHHHHHhhhcccCC
Confidence 3556999999999999999964 688999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHhcCCCCCcceehhceeccccccccCCCCCCCCeeeecCceeeccccCCCcccc-cccccCCC
Q 026487 107 DLDEPQIEHLLQTAEAIRKDYPDEDWLHLTGLIHDLGKVLNLPSFGGLPQWAVVGDTFPVGCAFDESIVHH-KYFKENPD 185 (238)
Q Consensus 107 D~dlpqi~H~lQTAEaiR~d~p~pDW~qLtGliHDLGKvl~~p~fg~~~QWavvGdTfpVGC~f~~~iv~~-e~f~~NpD 185 (238)
|+|+|||+|||||||+||++||++||||||||||||||||. |+++||||||||||||||+|++||||+ ++|..|||
T Consensus 92 DlDepni~Ha~QtAE~iR~~~Pd~dWlHLtaLiHDLGKvl~---f~GepQWAVvGDTfpVGC~~~~s~V~~d~~F~~NpD 168 (204)
T KOG1573|consen 92 DLDEPNIQHALQTAEAIRKDYPDEDWLHLTALIHDLGKVLA---FGGEPQWAVVGDTFPVGCAFDASNVHHDKYFDGNPD 168 (204)
T ss_pred CCchHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHH---hcCCcceeeecCcccccccccccceechhhccCCCC
Confidence 99999999999999999999999999999999999999995 588999999999999999999999998 99999999
Q ss_pred CCCCCccccCccccCCCCcccccccccchhHHHHHH
Q 026487 186 YSNPAFNTEYGVYSEGCGLDNVMMSWGHDDYMYLVK 221 (238)
Q Consensus 186 ~~~p~ynt~~GiY~~~CGLdnv~mSWGHDEYlY~Vl 221 (238)
.+||+|||+.|||+||||||||+||||||||||+|+
T Consensus 169 ~~np~YnT~~GiYqe~CGldnvlMsWgHDeYMY~V~ 204 (204)
T KOG1573|consen 169 INNPKYNTKLGIYQEGCGLDNVLMSWGHDEYMYLVA 204 (204)
T ss_pred CCCcccccccccccCCCChhHHHhhcccccceeecC
Confidence 999999999999999999999999999999999984
No 3
>TIGR03276 Phn-HD phosphonate degradation operons associated HDIG domain protein. This small clade of proteins are found adjacent to other genes implicated in the catabolism of phosphonates. They are members of the TIGR00277 domain family and contain a series of five invariant histidines (the domain in general has only four).
Probab=97.16 E-value=0.00029 Score=61.42 Aligned_cols=55 Identities=24% Similarity=0.353 Sum_probs=40.4
Q ss_pred HHHHHhhhhcCCCCCCCChHHHHHHHHHHHHHHhcCCCCCcceehhceeccccccc
Q 026487 92 ECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRKDYPDEDWLHLTGLIHDLGKVLN 147 (238)
Q Consensus 92 EA~e~Ln~lVDeSDPD~dlpqi~H~lQTAEaiR~d~p~pDW~qLtGliHDLGKvl~ 147 (238)
+-..++.......---...||++|+||||...+++|-++++ .+.+|+||+|.++.
T Consensus 6 ~i~~l~~~~g~~~y~Ge~Vs~leH~LQ~A~lA~~~Gad~el-vvAALLHDIGhll~ 60 (179)
T TIGR03276 6 EIFALFDEHGARQYGGEAVSQLEHALQCAQLAEAAGADDEL-IVAAFLHDIGHLLA 60 (179)
T ss_pred HHHHHHHhcCccccCCCCCcHHHHHHHHHHHHHHcCCCHHH-HHHHHHHhcchhhh
Confidence 33344444333322235789999999999999999866666 89999999999874
No 4
>TIGR00488 putative HD superfamily hydrolase of NAD metabolism. The function of this protein family is unknown. Members of this family of uncharacterized proteins from the Mycoplasmas are longer at the amino end, fused to a region of nicotinamide nucleotide adenylyltransferase, an NAD salvage biosynthesis enzyme. Members are putative metal-dependent phosphohydrolases for NAD metabolism.
Probab=94.05 E-value=0.019 Score=47.31 Aligned_cols=38 Identities=29% Similarity=0.448 Sum_probs=29.8
Q ss_pred ChHHHHHHHHHHHHHH----hcCCCCCcceehhceecccccc
Q 026487 109 DEPQIEHLLQTAEAIR----KDYPDEDWLHLTGLIHDLGKVL 146 (238)
Q Consensus 109 dlpqi~H~lQTAEaiR----~d~p~pDW~qLtGliHDLGKvl 146 (238)
+.....|.+.+|...| +-++++++..++||+||+||.+
T Consensus 6 ~~~r~~Hsl~Va~~a~~lA~~~~~d~e~a~~AGLLHDIGk~~ 47 (158)
T TIGR00488 6 DEHRYQHCLGVGQTAKQLAEANKLDSKKAEIAGAYHDLAKFL 47 (158)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHhccC
Confidence 3456799999887643 4456788999999999999964
No 5
>TIGR00277 HDIG uncharacterized domain HDIG. This domain is found in a few known nucleotidyltransferes and in a large number of uncharacterized proteins. It contains four widely separated His residues, the second of which is part of an invariant dipeptide His-Asp in a region matched approximately by the motif HDIG.
Probab=92.03 E-value=0.14 Score=35.54 Aligned_cols=34 Identities=26% Similarity=0.389 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHH----hcCCCCCcceehhceecccccc
Q 026487 113 IEHLLQTAEAIR----KDYPDEDWLHLTGLIHDLGKVL 146 (238)
Q Consensus 113 i~H~lQTAEaiR----~d~p~pDW~qLtGliHDLGKvl 146 (238)
..|.+.+|...+ +-+.+++.+-++||+||+||+.
T Consensus 6 ~~H~~~v~~~a~~la~~~~~~~~~l~~AalLHDiG~~~ 43 (80)
T TIGR00277 6 LQHSLEVAKLAEALARELGLDVELARRGALLHDIGKPI 43 (80)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHccCCcc
Confidence 345555444433 3333456678999999999976
No 6
>PF01966 HD: HD domain; InterPro: IPR006674 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity []. These enzymes appear to be involved in the nucleic acid metabolism, signal transduction and possibly other functions in bacteria, archaea and eukaryotes. The fact that all the highly conserved residues in the HD superfamily are histidines or aspartates suggests that coordination of divalent cations is essential for the activity of these proteins [].; GO: 0008081 phosphoric diester hydrolase activity, 0046872 metal ion binding; PDB: 2CQZ_A 2Q14_C 3CCG_A 2PAU_A 2PAQ_B 2PAR_B 3BG2_A 3NQW_A 2QGS_B 2DQB_D ....
Probab=91.12 E-value=0.037 Score=40.55 Aligned_cols=35 Identities=34% Similarity=0.620 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHH---hcC---CCCCcceehhceeccccccc
Q 026487 113 IEHLLQTAEAIR---KDY---PDEDWLHLTGLIHDLGKVLN 147 (238)
Q Consensus 113 i~H~lQTAEaiR---~d~---p~pDW~qLtGliHDLGKvl~ 147 (238)
++|.+.+|+..+ +.. .+.+++.++||+||+||...
T Consensus 2 ~~Hs~~V~~~a~~l~~~~~~~~~~~~l~~aaLlHDiGk~~~ 42 (122)
T PF01966_consen 2 FEHSLRVAELAERLADRLGLEEDRELLRIAALLHDIGKIPT 42 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTHHST
T ss_pred hhHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhcCCCCC
Confidence 578777776644 222 25578899999999999883
No 7
>smart00471 HDc Metal dependent phosphohydrolases with conserved 'HD' motif. Includes eukaryotic cyclic nucleotide phosphodiesterases (PDEc). This profile/HMM does not detect HD homologues in bacterial glycine aminoacyl-tRNA synthetases (beta subunit).
Probab=90.20 E-value=0.07 Score=38.22 Aligned_cols=39 Identities=31% Similarity=0.303 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHHHHHhcC---C--CCCcceehhceecccccccc
Q 026487 110 EPQIEHLLQTAEAIRKDY---P--DEDWLHLTGLIHDLGKVLNL 148 (238)
Q Consensus 110 lpqi~H~lQTAEaiR~d~---p--~pDW~qLtGliHDLGKvl~~ 148 (238)
.+..+|.+++|..++.-. + +.+.+-++||+||+||....
T Consensus 3 ~~~~~H~~~v~~~~~~l~~~~~~~~~~~~~~a~LlHDig~~~~~ 46 (124)
T smart00471 3 YHVFEHSLRVAQLAAALAEELGLLDIELLLLAALLHDIGKPGTP 46 (124)
T ss_pred chHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHcccCccCC
Confidence 345788888877765222 1 34677899999999998743
No 8
>COG4341 Predicted HD phosphohydrolase [General function prediction only]
Probab=89.66 E-value=0.31 Score=43.17 Aligned_cols=46 Identities=30% Similarity=0.384 Sum_probs=35.5
Q ss_pred cCCCCCCCChHHHHHHHHHHHHHHhcCCCCCcceehhceeccccccc
Q 026487 101 VDESDPDLDEPQIEHLLQTAEAIRKDYPDEDWLHLTGLIHDLGKVLN 147 (238)
Q Consensus 101 VDeSDPD~dlpqi~H~lQTAEaiR~d~p~pDW~qLtGliHDLGKvl~ 147 (238)
-||+=--.-++|.+|+||+|-..-++|-+.+| .-..|+||+|-+..
T Consensus 20 g~e~y~ge~VTq~eHaLQ~AtlAerdGa~~~l-VaaALLHDiGhl~~ 65 (186)
T COG4341 20 GDEGYSGEPVTQLEHALQCATLAERDGADTAL-VAAALLHDIGHLYA 65 (186)
T ss_pred cccccccCcchhhhhHHHHhHHHHhcCCcHHH-HHHHHHHhHHHHhh
Confidence 34443344578999999999999999954455 56789999999984
No 9
>TIGR01596 cas3_HD CRISPR-associated endonuclease Cas3-HD. CRISPR/Cas systems are widespread, mobile systems for host defense against invasive elements such as phage. In these systems, Cas3 designates one of the core proteins shared widely by multiple types of CRISPR/Cas system. This model represents an HD-like endonuclease that occurs either separately or as the N-terminal region of Cas3, the helicase-containing CRISPR-associated protein.
Probab=87.96 E-value=0.13 Score=41.37 Aligned_cols=33 Identities=39% Similarity=0.536 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHh----------cC--CCCCcceehhceecccccc
Q 026487 114 EHLLQTAEAIRK----------DY--PDEDWLHLTGLIHDLGKVL 146 (238)
Q Consensus 114 ~H~lQTAEaiR~----------d~--p~pDW~qLtGliHDLGKvl 146 (238)
+|++.||+..+. .. +.++++-+.+++||+||+-
T Consensus 3 ~H~~~v~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~lHDiGK~~ 47 (177)
T TIGR01596 3 EHLLDVAAVAEKLKNLDIVIADLIGKLLRELLDLLALLHDIGKIN 47 (177)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHhhHHHHHHHHHHHHccCccCC
Confidence 677777776553 11 1357899999999999975
No 10
>PRK00106 hypothetical protein; Provisional
Probab=85.80 E-value=0.54 Score=47.21 Aligned_cols=55 Identities=11% Similarity=0.213 Sum_probs=41.5
Q ss_pred HHHHHHhhhhcCCCCCCCChHHHHHHHHHHHHH----HhcCCCCCcceehhceeccccccc
Q 026487 91 WECCELLNDVVDESDPDLDEPQIEHLLQTAEAI----RKDYPDEDWLHLTGLIHDLGKVLN 147 (238)
Q Consensus 91 ~EA~e~Ln~lVDeSDPD~dlpqi~H~lQTAEai----R~d~p~pDW~qLtGliHDLGKvl~ 147 (238)
.|++.+|-.|-.-+.-+-.+ ..|.+.+|... ++-+.++++.-+.||+||+||++.
T Consensus 332 ~e~~~~lg~l~~r~sy~qnl--~~HSv~VA~lA~~lA~~lgld~e~a~~AGLLHDIGK~v~ 390 (535)
T PRK00106 332 PDLIKIMGRLQFRTSYGQNV--LRHSVEVGKLAGILAGELGENVALARRAGFLHDMGKAID 390 (535)
T ss_pred HHHHHHHHHHhhhccCCCcH--HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCccC
Confidence 47777887776555444443 79999999875 444567789999999999999963
No 11
>COG2316 Predicted hydrolase (HD superfamily) [General function prediction only]
Probab=84.62 E-value=0.61 Score=41.73 Aligned_cols=56 Identities=29% Similarity=0.343 Sum_probs=40.8
Q ss_pred ccccHHHHHHHhhhhcCCCCCCCChHHHHHHHHHHHHHHh---c-CCCCCcceehhceeccccccc
Q 026487 86 VEMSIWECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRK---D-YPDEDWLHLTGLIHDLGKVLN 147 (238)
Q Consensus 86 ~~MsI~EA~e~Ln~lVDeSDPD~dlpqi~H~lQTAEaiR~---d-~p~pDW~qLtGliHDLGKvl~ 147 (238)
+.||-+||+++|.+.|. +.+| +.|++.++..+|- . +-+..=--++||+||+.--+.
T Consensus 28 ~~i~r~ea~eLlk~hv~----~e~L--~kHcla~eavMr~lARe~gEDEEkw~~~GlLHD~DYe~t 87 (212)
T COG2316 28 AAINRDEAYELLKEHVP----SESL--QKHCLAVEAVMRWLAREWGEDEEKWAVTGLLHDFDYELT 87 (212)
T ss_pred HhhcchHHHHHHHHhCC----cHHH--HHHHHHHHHHHHHHHHHhCccHHHHHHHhhhhhccHHhh
Confidence 46888999999999874 3444 8999999998873 2 222222258999999876553
No 12
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=84.21 E-value=0.75 Score=45.67 Aligned_cols=54 Identities=22% Similarity=0.274 Sum_probs=36.9
Q ss_pred HHHHHHhhhhcCCCCCCCChHHHHHHHHHHHH----HHhcCCCCCcceehhceecccccc
Q 026487 91 WECCELLNDVVDESDPDLDEPQIEHLLQTAEA----IRKDYPDEDWLHLTGLIHDLGKVL 146 (238)
Q Consensus 91 ~EA~e~Ln~lVDeSDPD~dlpqi~H~lQTAEa----iR~d~p~pDW~qLtGliHDLGKvl 146 (238)
.+++.+|..|---+....+ ...|.+.+|.. .++-+.+++...+.||+||+||++
T Consensus 311 ~~~~~~l~~l~~r~~~~~~--~l~Hs~~VA~lA~~LA~~lgld~~~a~~AGLLHDIGK~~ 368 (514)
T TIGR03319 311 PELIKLLGRLKFRTSYGQN--VLQHSIEVAHLAGIMAAELGEDVKLAKRAGLLHDIGKAV 368 (514)
T ss_pred HHHHHHHHHhhccccCCcc--HHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHhcCccc
Confidence 4566667665433222222 36899888876 345566778888999999999986
No 13
>PF08668 HDOD: HDOD domain; InterPro: IPR013976 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity. These members appear to be involved in the nucleic acid metabolism and signal transduction or possibly other functions and are restricted to bacteria, primarily the proteobacteria. The fact that all the highly conserved residues in the HD superfamily are histidines or aspartates suggests that coordination of divalent cations is essential for the activity of these proteins [].; PDB: 1VQR_D 3LJX_A 3P3Q_B 3MEM_A 3M1T_A 3HC1_A 3I7A_A.
Probab=83.74 E-value=1.4 Score=36.41 Aligned_cols=69 Identities=30% Similarity=0.287 Sum_probs=43.4
Q ss_pred hcCCCCccccHHHHHHHhhh--------------hcCCCC-CCCChHH-HHHHHHHHHHHH----hcCC-CCCcceehhc
Q 026487 80 YGKLNRVEMSIWECCELLND--------------VVDESD-PDLDEPQ-IEHLLQTAEAIR----KDYP-DEDWLHLTGL 138 (238)
Q Consensus 80 ~~~~~~~~MsI~EA~e~Ln~--------------lVDeSD-PD~dlpq-i~H~lQTAEaiR----~d~p-~pDW~qLtGl 138 (238)
+.+..+.--||.+|+-.|=. ....+. ....+.. ..|.+.+|..++ +.+. ++|-.-++||
T Consensus 47 ~~~~~~~i~sl~~Ai~~LG~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~a~~a~~la~~~~~~~~~~a~~~gL 126 (196)
T PF08668_consen 47 YFGLRRPISSLEQAISRLGLDRIRNLALALSLRSLFPSSPPYQFNLERFWRHSLAAAAIARRLARELGFDDPDEAYLAGL 126 (196)
T ss_dssp TTTSTST--SHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSCTTSCHHHHHHHHHHHHHHHHHHHHHCTCCHHHHHHHHHH
T ss_pred hcCCCCCCCCHHHHHHHhCHHHHHHHHHHHHHHHHccccchhhhhHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44455666799999876641 122222 2223333 489999988865 2332 3478889999
Q ss_pred eecccccccc
Q 026487 139 IHDLGKVLNL 148 (238)
Q Consensus 139 iHDLGKvl~~ 148 (238)
+||+|+++..
T Consensus 127 L~~iG~l~l~ 136 (196)
T PF08668_consen 127 LHDIGKLLLL 136 (196)
T ss_dssp HTTHHHHHHH
T ss_pred HHHHhHHHHH
Confidence 9999999975
No 14
>cd00077 HDc Metal dependent phosphohydrolases with conserved 'HD' motif
Probab=83.51 E-value=0.28 Score=35.54 Aligned_cols=35 Identities=37% Similarity=0.603 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHH---hcC----CCCCcceehhceecccccc
Q 026487 112 QIEHLLQTAEAIR---KDY----PDEDWLHLTGLIHDLGKVL 146 (238)
Q Consensus 112 qi~H~lQTAEaiR---~d~----p~pDW~qLtGliHDLGKvl 146 (238)
...|.++++..+. +.. .+++.+-+.||+||+||..
T Consensus 3 ~~~Hs~~v~~~~~~~~~~~~~~~~~~~~l~~aaLlHDig~~~ 44 (145)
T cd00077 3 RFEHSLRVAQLARRLAEELGLSEEDIELLRLAALLHDIGKPG 44 (145)
T ss_pred hHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHhcCCcc
Confidence 3567766655543 221 2346778999999999976
No 15
>PF15608 PELOTA_1: PELOTA RNA binding domain
Probab=81.21 E-value=4.7 Score=32.65 Aligned_cols=55 Identities=31% Similarity=0.476 Sum_probs=44.7
Q ss_pred hhhhhHHHHHHHHHHHhcC--CCCccccHHHHHHHhhh------hcCCCCCCCChHHHHHHHHHHHH
Q 026487 64 NHINQTYDFVKKMREEYGK--LNRVEMSIWECCELLND------VVDESDPDLDEPQIEHLLQTAEA 122 (238)
Q Consensus 64 ~H~~QTvdfv~~~~~~~~~--~~~~~MsI~EA~e~Ln~------lVDeSDPD~dlpqi~H~lQTAEa 122 (238)
..+.|+.++|.+..++|+- .|+.+-+|=||-..|.. ||++. + -|.+.|+++.|+.
T Consensus 16 ~~~~~g~~~v~~i~~~~gI~diN~IKPGIgEaTRvLLRRvP~~vLVr~~--~--~pd~~Hl~~LA~e 78 (100)
T PF15608_consen 16 APTWQGWAEVERIAERYGISDINLIKPGIGEATRVLLRRVPWKVLVRDP--D--DPDLAHLLLLAEE 78 (100)
T ss_pred chhHHHHHHHHHHHHHhCCCCcccccCChhHHHHHHHhcCCCEEEECCC--C--CccHHHHHHHHHH
Confidence 4567899999999999974 66889999999999987 45532 2 2788999999986
No 16
>PRK12703 tRNA 2'-O-methylase; Reviewed
Probab=72.74 E-value=2.9 Score=39.95 Aligned_cols=60 Identities=22% Similarity=0.312 Sum_probs=40.3
Q ss_pred cCCCCccccHHHHHHHhhhh-cCCCCCCCChHHHHHHHHHHHHHH----hcCCCCCcceehhceeccccccc
Q 026487 81 GKLNRVEMSIWECCELLNDV-VDESDPDLDEPQIEHLLQTAEAIR----KDYPDEDWLHLTGLIHDLGKVLN 147 (238)
Q Consensus 81 ~~~~~~~MsI~EA~e~Ln~l-VDeSDPD~dlpqi~H~lQTAEaiR----~d~p~pDW~qLtGliHDLGKvl~ 147 (238)
+|.....++.-||+++|... .++ ..+.|.++.+...+ +.+.+.+=..+.||+||+||...
T Consensus 163 gk~v~~ip~~ee~l~Ll~k~~~~e-------~l~~Hs~rVa~lA~~LA~~~~~D~~ll~aAALLHDIGK~k~ 227 (339)
T PRK12703 163 GKLVKIIPDEDQCLDLLKKYGASD-------LLIRHVKTVYKLAMRIADCINADRRLVAAGALLHDIGRTKT 227 (339)
T ss_pred cccccCCCCHHHHHHHHHHcCCCh-------HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcccccc
Confidence 34445568999999999987 322 14788887665422 22234455567899999999764
No 17
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated
Probab=71.16 E-value=1.7 Score=40.29 Aligned_cols=35 Identities=29% Similarity=0.349 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHH----hcCCCCCcceehhceecccccc
Q 026487 112 QIEHLLQTAEAIR----KDYPDEDWLHLTGLIHDLGKVL 146 (238)
Q Consensus 112 qi~H~lQTAEaiR----~d~p~pDW~qLtGliHDLGKvl 146 (238)
-..|.+.+|...+ +-+.+++=.-++||+||+||+.
T Consensus 197 ~~~HSl~VA~~A~~LA~~~g~d~~~a~~AGLLHDIGK~~ 235 (342)
T PRK07152 197 RYKHCLRVAQLAAELAKKNNLDPKKAYYAGLYHDITKEW 235 (342)
T ss_pred HHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHhhccC
Confidence 4589898887644 2233445556899999999976
No 18
>PRK12705 hypothetical protein; Provisional
Probab=69.40 E-value=3.3 Score=41.55 Aligned_cols=35 Identities=29% Similarity=0.397 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHH----hcCCCCCcceehhceecccccc
Q 026487 112 QIEHLLQTAEAIR----KDYPDEDWLHLTGLIHDLGKVL 146 (238)
Q Consensus 112 qi~H~lQTAEaiR----~d~p~pDW~qLtGliHDLGKvl 146 (238)
.+.|.+.+|..++ +-+-+++....+||+||+||..
T Consensus 324 vl~HSl~VA~lA~~LA~~lGld~d~a~~AGLLHDIGK~i 362 (508)
T PRK12705 324 VLSHSLEVAHLAGIIAAEIGLDPALAKRAGLLHDIGKSI 362 (508)
T ss_pred HHHHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHcCCcc
Confidence 3789999988754 4444667777899999999986
No 19
>TIGR00295 conserved hypothetical protein TIGR00295. This set of orthologs is narrowly defined, comprising proteins found in three Archaea but not in Pyrococcus horikoshii. The closest homologs are other archaeal proteins that appear to be represent distinct orthologous clusters.
Probab=69.01 E-value=2 Score=36.02 Aligned_cols=36 Identities=25% Similarity=0.284 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHH----hcC-----CCCCcceehhceeccccccc
Q 026487 112 QIEHLLQTAEAIR----KDY-----PDEDWLHLTGLIHDLGKVLN 147 (238)
Q Consensus 112 qi~H~lQTAEaiR----~d~-----p~pDW~qLtGliHDLGKvl~ 147 (238)
-+.|.+..|...+ +-+ .+++=.-+.||+||+||+..
T Consensus 14 ~~~Hs~~Va~~A~~ia~~~~~~~~~~d~~~l~~aaLLHDIGK~~~ 58 (164)
T TIGR00295 14 VRRHCLAVARVAMELAENIRKKGHEVDMDLVLKGALLHDIGRART 58 (164)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHhcCCcccC
Confidence 4688887666522 221 34456678999999999863
No 20
>PRK05007 PII uridylyl-transferase; Provisional
Probab=64.62 E-value=13 Score=39.29 Aligned_cols=34 Identities=26% Similarity=0.459 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHh------------------cCCCCCcceehhceecccc
Q 026487 111 PQIEHLLQTAEAIRK------------------DYPDEDWLHLTGLIHDLGK 144 (238)
Q Consensus 111 pqi~H~lQTAEaiR~------------------d~p~pDW~qLtGliHDLGK 144 (238)
+.-+|.+.+-+.+++ +-++++.+.|++|+||+||
T Consensus 461 tVd~Htl~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lL~lAaLlHDIGK 512 (884)
T PRK05007 461 TVDEHTIRVLLKLESFADEETRQRHPLCVELYPRLPKKELLLLAALFHDIAK 512 (884)
T ss_pred cHhHHHHHHHHHHHHHhcccccccchHHHHHHHhcCChhHHHHHHHHHhhcC
Confidence 344788888777652 1236788999999999999
No 21
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=63.82 E-value=3.6 Score=43.70 Aligned_cols=34 Identities=26% Similarity=0.326 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHh---cCCCCCc---ceehhceecccccc
Q 026487 113 IEHLLQTAEAIRK---DYPDEDW---LHLTGLIHDLGKVL 146 (238)
Q Consensus 113 i~H~lQTAEaiR~---d~p~pDW---~qLtGliHDLGKvl 146 (238)
-+|+..+|+..++ ...-++| ..+.|+.|||||.-
T Consensus 677 ~eHl~~va~lA~~fa~~~gl~~~~~~~~laGllHDlGK~~ 716 (844)
T TIGR02621 677 SDHLDNVFEVAKNFVAKLGLGDLDKAVRQAARLHDLGKQR 716 (844)
T ss_pred HHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccccCC
Confidence 4899999888663 3335677 47999999999976
No 22
>PRK10885 cca multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase; Reviewed
Probab=58.85 E-value=3.5 Score=39.69 Aligned_cols=57 Identities=25% Similarity=0.213 Sum_probs=35.7
Q ss_pred cHHHHHHHhhhhcCCCCCCCC----------hHHHHHHHHHHHHHHhcCCCCCcceehhceecccccc
Q 026487 89 SIWECCELLNDVVDESDPDLD----------EPQIEHLLQTAEAIRKDYPDEDWLHLTGLIHDLGKVL 146 (238)
Q Consensus 89 sI~EA~e~Ln~lVDeSDPD~d----------lpqi~H~lQTAEaiR~d~p~pDW~qLtGliHDLGKvl 146 (238)
.++..+.+|..++.|-+.-.. .+..+|.+.+-+.+.+-- ....+-++.|+||+||-.
T Consensus 195 ~~L~~~g~L~~l~PEl~~l~~~~Q~~~~H~e~dv~~Htl~~l~~~~~l~-~~l~lr~AaLlHDlGK~~ 261 (409)
T PRK10885 195 QVLRDCGALAVLLPEIDALFGVPQPAKWHPEIDTGIHTLMVLDQAAKLS-PSLDVRFAALCHDLGKGL 261 (409)
T ss_pred HHHHHhhHHHHHhhHHHHHhcCCCCcCCCCCCcHHHHHHHHHHHHHhcC-CCHHHHHHHHhccccCCC
Confidence 344455555555555332111 234589888887776543 234578899999999966
No 23
>PRK12704 phosphodiesterase; Provisional
Probab=57.08 E-value=9.1 Score=38.24 Aligned_cols=53 Identities=25% Similarity=0.292 Sum_probs=33.8
Q ss_pred HHHHHhhhhcCCCCCCCChHHHHHHHHHHHHHH----hcCCCCCcceehhceecccccc
Q 026487 92 ECCELLNDVVDESDPDLDEPQIEHLLQTAEAIR----KDYPDEDWLHLTGLIHDLGKVL 146 (238)
Q Consensus 92 EA~e~Ln~lVDeSDPD~dlpqi~H~lQTAEaiR----~d~p~pDW~qLtGliHDLGKvl 146 (238)
+++.+|..+ .-.|+.+. ....|.+-+|-..+ .-+.+++-.-+.||+||+||+.
T Consensus 318 ~i~~ll~~l-~~R~~~~q-n~l~Hs~~Va~lA~~lA~~lgld~~~a~~AgLLHDIGK~~ 374 (520)
T PRK12704 318 ELIKLLGRL-KYRTSYGQ-NVLQHSIEVAHLAGLMAAELGLDVKLAKRAGLLHDIGKAL 374 (520)
T ss_pred HHHHHHHHh-hccCcCCC-cHhHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHccCcCc
Confidence 456666665 33343332 13578887766533 3344566777999999999986
No 24
>PRK05092 PII uridylyl-transferase; Provisional
Probab=51.36 E-value=5.2 Score=42.17 Aligned_cols=56 Identities=16% Similarity=0.155 Sum_probs=35.1
Q ss_pred cHHHHHHHhhhhcCCCCCCCChHH---------HHHHHHHHHHHHhc------------------CCCCCcceehhceec
Q 026487 89 SIWECCELLNDVVDESDPDLDEPQ---------IEHLLQTAEAIRKD------------------YPDEDWLHLTGLIHD 141 (238)
Q Consensus 89 sI~EA~e~Ln~lVDeSDPD~dlpq---------i~H~lQTAEaiR~d------------------~p~pDW~qLtGliHD 141 (238)
.++..+.+|..++.|=..=..++| -+|.++|-+.+++- -++++.+-|++|+||
T Consensus 462 ~~m~~~GvL~~~iPef~~i~~~~Q~d~~H~ytVd~Htl~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~lAaLlHD 541 (931)
T PRK05092 462 RRMNEAGVLGRFIPDFGRIVAMMQFNMYHHYTVDEHTIRAIGVLAEIERGELADEHPLASELMPKIESRRALYVAVLLHD 541 (931)
T ss_pred HHHHHhCChHHhcccHHhcccccccccceeccHhHHHHHHHHHHHHHhcccccccchhHHHHHHhcCCHHHHHHHHHHHH
Confidence 344444555556666433222222 26888887776531 245678899999999
Q ss_pred ccc
Q 026487 142 LGK 144 (238)
Q Consensus 142 LGK 144 (238)
+||
T Consensus 542 IGK 544 (931)
T PRK05092 542 IAK 544 (931)
T ss_pred hhc
Confidence 999
No 25
>PRK13480 3'-5' exoribonuclease YhaM; Provisional
Probab=47.98 E-value=7.6 Score=36.52 Aligned_cols=34 Identities=41% Similarity=0.619 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhcCCCC--Ccceehhceecccccccc
Q 026487 115 HLLQTAEAIRKDYPDE--DWLHLTGLIHDLGKVLNL 148 (238)
Q Consensus 115 H~lQTAEaiR~d~p~p--DW~qLtGliHDLGKvl~~ 148 (238)
.++++|.++-..||.- |-+-...|+||+||+..+
T Consensus 166 ~v~~~~~~l~~~y~~~n~dll~agalLHDiGKi~E~ 201 (314)
T PRK13480 166 SMLRLAKSICDLYPSLNKDLLYAGIILHDLGKVIEL 201 (314)
T ss_pred HHHHHHHHHHHhccccCHHHHHHHHHHHHhhhHHHh
Confidence 3445555565667744 445566789999999876
No 26
>TIGR03760 ICE_TraI_Pfluor integrating conjugative element relaxase, PFL_4751 family. Members of this protein family are the TraI putative relaxases required for transfer by a subclass of integrating conjugative elements (ICE) as found in Pseudomonas fluorescens Pf-5, and understood from study of two related ICE, SXT and R391. This model represents the N-terminal domain. Note that no homology is detected to the similarly named TraI relaxase of the F plasmid.
Probab=47.03 E-value=8.6 Score=34.33 Aligned_cols=15 Identities=40% Similarity=0.722 Sum_probs=12.1
Q ss_pred ceehhceeccccccc
Q 026487 133 LHLTGLIHDLGKVLN 147 (238)
Q Consensus 133 ~qLtGliHDLGKvl~ 147 (238)
.-..+|+||+||++.
T Consensus 108 ~~~aaLlHDlgK~~~ 122 (218)
T TIGR03760 108 VFYAALLHDLGKLAV 122 (218)
T ss_pred HHHHHHHHhhhhhhH
Confidence 356789999999963
No 27
>PRK03381 PII uridylyl-transferase; Provisional
Probab=46.48 E-value=8.2 Score=40.08 Aligned_cols=35 Identities=34% Similarity=0.451 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHH---HhcCCCCCcceehhceeccccc
Q 026487 111 PQIEHLLQTAEAI---RKDYPDEDWLHLTGLIHDLGKV 145 (238)
Q Consensus 111 pqi~H~lQTAEai---R~d~p~pDW~qLtGliHDLGKv 145 (238)
+.-+|.+.|-+.+ ...-+.|+.+-|++|+||+||-
T Consensus 420 tVd~Htl~~l~~~~~~~~~~~~~~lL~lAaLlHDiGKg 457 (774)
T PRK03381 420 TVDRHLVETAVRAAALTRRVARPDLLLLGALLHDIGKG 457 (774)
T ss_pred hHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCC
Confidence 4446888775554 3344467889999999999993
No 28
>COG2206 c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms]
Probab=46.17 E-value=10 Score=35.28 Aligned_cols=43 Identities=28% Similarity=0.317 Sum_probs=27.8
Q ss_pred cCCCCCCCChHHHHHHHHHHHHHHhcC---CCCC----cceehhceeccccccc
Q 026487 101 VDESDPDLDEPQIEHLLQTAEAIRKDY---PDED----WLHLTGLIHDLGKVLN 147 (238)
Q Consensus 101 VDeSDPD~dlpqi~H~lQTAEaiR~d~---p~pD----W~qLtGliHDLGKvl~ 147 (238)
++..|+-| -.|-..+|+-.+.-+ .-++ ++-+.|++||.||+--
T Consensus 142 ~~~kd~~t----~~Hs~~va~~a~~ia~~lgl~~~~i~~l~~aalLHDIGKi~i 191 (344)
T COG2206 142 IKAKDDYT----YGHSVRVAELAEAIAKKLGLSEEKIEELALAGLLHDIGKIGI 191 (344)
T ss_pred ccccchhH----HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcccccC
Confidence 55555444 468888877644322 1222 5578999999999874
No 29
>COG3481 Predicted HD-superfamily hydrolase [General function prediction only]
Probab=44.89 E-value=15 Score=34.68 Aligned_cols=51 Identities=25% Similarity=0.444 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHhcCCCC--CcceehhceeccccccccCCCCCCCCeeeecCcee
Q 026487 114 EHLLQTAEAIRKDYPDE--DWLHLTGLIHDLGKVLNLPSFGGLPQWAVVGDTFP 165 (238)
Q Consensus 114 ~H~lQTAEaiR~d~p~p--DW~qLtGliHDLGKvl~~p~fg~~~QWavvGdTfp 165 (238)
.-+++.|.++-+-||-- |=++..+.+||+||++-+-... ...|++-|+-.+
T Consensus 147 ~~~~~l~~~~~~~y~~~n~dli~Ag~ilHdigK~~el~~~~-~~~yt~~g~lig 199 (287)
T COG3481 147 LTVLELYKRISEIYPTVNRELIYAGAILHDIGKVLELTGPE-ATEYTVRGNLIG 199 (287)
T ss_pred HHHHHHHHHHHhhcccccHHHHHHHHHHhcccccccCCCcc-cccceeccceeE
Confidence 44566777777767633 5678899999999999762222 357888887655
No 30
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=42.36 E-value=1.3e+02 Score=27.94 Aligned_cols=97 Identities=25% Similarity=0.313 Sum_probs=59.4
Q ss_pred CCccccHHHHHHHhhhhcCCCCCCCChHHH-HHHHHHHHHHHhcCCCCCcceehhceeccccccccCCCCC--------C
Q 026487 84 NRVEMSIWECCELLNDVVDESDPDLDEPQI-EHLLQTAEAIRKDYPDEDWLHLTGLIHDLGKVLNLPSFGG--------L 154 (238)
Q Consensus 84 ~~~~MsI~EA~e~Ln~lVDeSDPD~dlpqi-~H~lQTAEaiR~d~p~pDW~qLtGliHDLGKvl~~p~fg~--------~ 154 (238)
|....|-.+..+.|..+... |++..+| .=..-||+.|++.+|. +||+.+ |+ .
T Consensus 48 Nn~~~s~~~~~~~L~~~~~~---~~~~~~i~TS~~at~~~l~~~~~~-------------~kv~vi---G~~~l~~~l~~ 108 (269)
T COG0647 48 NNSTRSREVVAARLSSLGGV---DVTPDDIVTSGDATADYLAKQKPG-------------KKVYVI---GEEGLKEELEG 108 (269)
T ss_pred CCCCCCHHHHHHHHHhhcCC---CCCHHHeecHHHHHHHHHHhhCCC-------------CEEEEE---CCcchHHHHHh
Confidence 45666777677777774332 3333333 4556788888888752 444443 21 2
Q ss_pred CCeeeecCcee-----eccccCCCccc-------------ccccccCCCCCCCCccccCccccCCCC
Q 026487 155 PQWAVVGDTFP-----VGCAFDESIVH-------------HKYFKENPDYSNPAFNTEYGVYSEGCG 203 (238)
Q Consensus 155 ~QWavvGdTfp-----VGC~f~~~iv~-------------~e~f~~NpD~~~p~ynt~~GiY~~~CG 203 (238)
-.|.++++.=| |.+..++...| ..|+..|||.. +.|+.| +-|+||
T Consensus 109 ~G~~~~~~~~~~~~d~Vv~g~d~~~~~e~l~~a~~~i~~g~~fI~tNpD~~---~p~~~g-~~pgaG 171 (269)
T COG0647 109 AGFELVDEEEPARVDAVVVGLDRTLTYEKLAEALLAIAAGAPFIATNPDLT---VPTERG-LRPGAG 171 (269)
T ss_pred CCcEEeccCCCCcccEEEEecCCCCCHHHHHHHHHHHHcCCcEEEeCCCcc---ccCCCC-CccCcH
Confidence 24555554333 66667777776 46788999965 556778 678887
No 31
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=38.73 E-value=12 Score=39.60 Aligned_cols=36 Identities=33% Similarity=0.480 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHHHHHhc------------------CCCCCcceehhceeccccc
Q 026487 110 EPQIEHLLQTAEAIRKD------------------YPDEDWLHLTGLIHDLGKV 145 (238)
Q Consensus 110 lpqi~H~lQTAEaiR~d------------------~p~pDW~qLtGliHDLGKv 145 (238)
.+.-+|.+.|-+.+++- -.+++.+-|++|+||+||-
T Consensus 459 ytVdeHtl~~v~~l~~l~~~~~~~~~p~~~~l~~~l~~~~lL~lAaLlHDIGKg 512 (895)
T PRK00275 459 YTVDAHTLNLIKNLRKLRYPEVSEKFPLASKLMGRLPKPELLYIAGLYHDIGKG 512 (895)
T ss_pred CcHHHHHHHHHHHHHHhhcccccccCchHHHHHHhcCCHHHHHHHHHHHhhhcC
Confidence 34447999998777541 1245788999999999993
No 32
>PF13328 HD_4: HD domain; PDB: 3NR1_B.
Probab=38.70 E-value=14 Score=30.17 Aligned_cols=36 Identities=33% Similarity=0.360 Sum_probs=23.3
Q ss_pred CCCChHHHHHHHHHHHHHHhcCCCCCcceehhceecc
Q 026487 106 PDLDEPQIEHLLQTAEAIRKDYPDEDWLHLTGLIHDL 142 (238)
Q Consensus 106 PD~dlpqi~H~lQTAEaiR~d~p~pDW~qLtGliHDL 142 (238)
.+...|-|.|++++|+.+..-+-++ =...+||+||.
T Consensus 14 ~~~g~py~~H~~~va~~l~~~~~d~-~~i~aalLHD~ 49 (153)
T PF13328_consen 14 RKSGEPYISHPLEVAEILAELGLDE-ETIAAALLHDV 49 (153)
T ss_dssp -ST--BTTHHHHHHHHHHHTS---H-HHHHHHHHTTH
T ss_pred CCCCCcHHHHHHHHHHHHHHcCCCH-HHHhhheeecH
Confidence 3455778999999999986665221 24688999984
No 33
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.39 E-value=1.5e+02 Score=25.45 Aligned_cols=60 Identities=18% Similarity=0.302 Sum_probs=35.2
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHH-HhcCCC-----CccccHHHHHHHhhhhcCCCCCCCChHHH----HHHHHHHH
Q 026487 56 GVENFYRINHINQTYDFVKKMRE-EYGKLN-----RVEMSIWECCELLNDVVDESDPDLDEPQI----EHLLQTAE 121 (238)
Q Consensus 56 ~V~~fY~~~H~~QTvdfv~~~~~-~~~~~~-----~~~MsI~EA~e~Ln~lVDeSDPD~dlpqi----~H~lQTAE 121 (238)
++.+.||++= .|+.+-...... +=+.-+ .++||+-||+..||- + ++++..-| +|||+..+
T Consensus 19 Af~~A~RQei-a~s~~aa~~~~a~k~g~~~~~~~~~~~iTlqEa~qILnV--~---~~ln~eei~k~yehLFevNd 88 (132)
T KOG3442|consen 19 AFVQAYRQEI-AASQQAAARQAAGKSGTRSAEANSNGKITLQEAQQILNV--K---EPLNREEIEKRYEHLFEVND 88 (132)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHhhhcCcccccccccccccHHHHhhHhCC--C---CCCCHHHHHHHHHHHHhccC
Confidence 4666777654 345555443332 222222 367999999999984 2 25554444 78887543
No 34
>PRK08071 L-aspartate oxidase; Provisional
Probab=37.44 E-value=48 Score=32.38 Aligned_cols=73 Identities=26% Similarity=0.422 Sum_probs=48.8
Q ss_pred HHHHHHHhcCCCCccccHHHHHHHhhhhc-CCC--CCC---CChHHHHHHHHHHHHH---------------HhcCCCCC
Q 026487 73 VKKMREEYGKLNRVEMSIWECCELLNDVV-DES--DPD---LDEPQIEHLLQTAEAI---------------RKDYPDED 131 (238)
Q Consensus 73 v~~~~~~~~~~~~~~MsI~EA~e~Ln~lV-DeS--DPD---~dlpqi~H~lQTAEai---------------R~d~p~pD 131 (238)
+++...+|.+..|.+-.+.+|+..|+.|- .+. +.+ ...-.+..++.+|+.| |.|||...
T Consensus 415 l~~~m~~~~gi~R~~~~L~~a~~~l~~l~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~P~~~ 494 (510)
T PRK08071 415 IQEKMMKYVGIVRTEQSLSEAKRWLEKYGVRNMILDHDALTNEEIELSHMLTVAKLIVVSALQRTESRGGHYRSDYPHRN 494 (510)
T ss_pred HHHHHHhhccEEEcHHHHHHHHHHHHHHHHhhhhccccccchhHHHHHhHHHHHHHHHHHHHhCCCCccceecCCCCccc
Confidence 45666778888888888999999999884 111 111 1112456788888874 66788778
Q ss_pred cceehhceecccccc
Q 026487 132 WLHLTGLIHDLGKVL 146 (238)
Q Consensus 132 W~qLtGliHDLGKvl 146 (238)
|...+ ++-.-||+.
T Consensus 495 ~~~~~-~~~~~~~~~ 508 (510)
T PRK08071 495 WRGKE-IVRTKRKLQ 508 (510)
T ss_pred cCceE-EEecCCcee
Confidence 87555 666666654
No 35
>PRK04374 PII uridylyl-transferase; Provisional
Probab=36.98 E-value=18 Score=38.42 Aligned_cols=35 Identities=29% Similarity=0.323 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHHHHhc------------------CCCCCcceehhceecccc
Q 026487 110 EPQIEHLLQTAEAIRKD------------------YPDEDWLHLTGLIHDLGK 144 (238)
Q Consensus 110 lpqi~H~lQTAEaiR~d------------------~p~pDW~qLtGliHDLGK 144 (238)
.+.-+|.+.+-+.+++- -++|+.+-|++|+||+||
T Consensus 448 ytVd~Htl~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~lL~lAaLlHDIGK 500 (869)
T PRK04374 448 YTVDQHTLMVLRNIALFAAGRADERFSIAHEVWPRLRKPELLLLAGLFHDIAK 500 (869)
T ss_pred CcHHHHHHHHHHHHHHHhccccccccccHHHHHhccCCccHHHHHHHHHhccC
Confidence 34457888877666521 124788999999999999
No 36
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=36.18 E-value=15 Score=38.70 Aligned_cols=35 Identities=26% Similarity=0.372 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHHHHh------------------cCCCCCcceehhceecccc
Q 026487 110 EPQIEHLLQTAEAIRK------------------DYPDEDWLHLTGLIHDLGK 144 (238)
Q Consensus 110 lpqi~H~lQTAEaiR~------------------d~p~pDW~qLtGliHDLGK 144 (238)
.+.-+|.+.|-+.+++ .-+++..+-|++|+||+||
T Consensus 435 ytVd~Htl~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~lAaLlHDIGK 487 (854)
T PRK01759 435 YTVDEHTLRVMLKLESFLDEESAEQHPICHQIFSQLSDRTLLYIAALFHDIAK 487 (854)
T ss_pred CcHHHHHHHHHHHHHHHhcccccccchhHHHHHHhcCCHHHHHHHHHHHhhcC
Confidence 3445798888776642 1245678899999999999
No 37
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=35.60 E-value=1.2e+02 Score=25.12 Aligned_cols=52 Identities=23% Similarity=0.330 Sum_probs=32.6
Q ss_pred HHHHHHHHHhcC--CC--CccccHHHHHHHhhhhcCCCCCCCChHHHHHHHHHHHHHHhcCCC
Q 026487 71 DFVKKMREEYGK--LN--RVEMSIWECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRKDYPD 129 (238)
Q Consensus 71 dfv~~~~~~~~~--~~--~~~MsI~EA~e~Ln~lVDeSDPD~dlpqi~H~lQTAEaiR~d~p~ 129 (238)
.|...+++-|.+ ++ ...||..||++.|.- +|+.+..+|.-++. +.+++-|||
T Consensus 41 ~~~~~~~~~~~~~~~~~f~~~Ms~~eAy~ILGv-----~~~As~~eIkkaYR--rLa~~~HPD 96 (116)
T PTZ00100 41 GFNPSLGSLFLKNDLKGFENPMSKSEAYKILNI-----SPTASKERIREAHK--QLMLRNHPD 96 (116)
T ss_pred hhhHHHHHHHhccccccccCCCCHHHHHHHcCC-----CCCCCHHHHHHHHH--HHHHHhCCC
Confidence 345666666644 33 458999999999984 34566666655543 344555654
No 38
>COG1418 Predicted HD superfamily hydrolase [General function prediction only]
Probab=35.28 E-value=29 Score=30.88 Aligned_cols=36 Identities=33% Similarity=0.498 Sum_probs=25.1
Q ss_pred HHHHHHHHH---HHHhc-CCCCCcceehhceecccccccc
Q 026487 113 IEHLLQTAE---AIRKD-YPDEDWLHLTGLIHDLGKVLNL 148 (238)
Q Consensus 113 i~H~lQTAE---aiR~d-~p~pDW~qLtGliHDLGKvl~~ 148 (238)
+.|.+.+|. .|-+. +-|++=....||+||+||....
T Consensus 38 l~H~~~Va~lA~~Ia~~~g~D~~l~~~aaLLHDIg~~~~~ 77 (222)
T COG1418 38 LEHSLRVAYLAYRIAEEEGVDPDLALRAALLHDIGKAIDH 77 (222)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcccccc
Confidence 467666554 45544 4455666899999999998843
No 39
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=34.95 E-value=16 Score=37.99 Aligned_cols=36 Identities=33% Similarity=0.338 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHh---cCCCCCcceehhceecccccc
Q 026487 111 PQIEHLLQTAEAIRK---DYPDEDWLHLTGLIHDLGKVL 146 (238)
Q Consensus 111 pqi~H~lQTAEaiR~---d~p~pDW~qLtGliHDLGKvl 146 (238)
+.-+|.++|.+.+.+ ...+|+=+-|++|+||+||-.
T Consensus 380 tVDeHTL~~l~~~~~~~~~~~~~~lL~LAALlHDIGKg~ 418 (693)
T PRK00227 380 TIDEHSLNTVANCALETVTVARPDLLLLGALYHDIGKGY 418 (693)
T ss_pred cHHHHHHHHHHHHHHhhhccCccHHHHHHHHHHhhcCCC
Confidence 444799999886543 334567778999999999953
No 40
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=34.15 E-value=58 Score=31.02 Aligned_cols=62 Identities=27% Similarity=0.363 Sum_probs=46.7
Q ss_pred ccccHHHHHHHhhhhcCCCCCCCChHHHHH------------HHHHHHHHHhcCCCCCcceehhceeccccccccCCCCC
Q 026487 86 VEMSIWECCELLNDVVDESDPDLDEPQIEH------------LLQTAEAIRKDYPDEDWLHLTGLIHDLGKVLNLPSFGG 153 (238)
Q Consensus 86 ~~MsI~EA~e~Ln~lVDeSDPD~dlpqi~H------------~lQTAEaiR~d~p~pDW~qLtGliHDLGKvl~~p~fg~ 153 (238)
.|-.+|+|+--=-+|+-+|.=|.|++++-- +=-||||.|++. |--|+.|-+||.|
T Consensus 178 IEYGmM~a~aEGfelL~~s~fD~D~~~VA~vW~hGSVIrSWLldLt~~Af~~d~---~L~q~~g~v~dSG---------- 244 (300)
T COG1023 178 IEYGMMQAIAEGFELLKNSPFDYDLEAVAEVWNHGSVIRSWLLDLTAEAFKKDP---DLDQISGRVSDSG---------- 244 (300)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCcchHHHHHHHHHHHHHhhCC---CHHHhcCeeccCC----------
Confidence 366778877666667778999999998732 335899999984 7778888888865
Q ss_pred CCCeeee
Q 026487 154 LPQWAVV 160 (238)
Q Consensus 154 ~~QWavv 160 (238)
|+.|+|.
T Consensus 245 EGrWTv~ 251 (300)
T COG1023 245 EGRWTVE 251 (300)
T ss_pred CceeehH
Confidence 5678764
No 41
>PF12477 TraW_N: Sex factor F TraW protein N terminal
Probab=33.12 E-value=16 Score=23.90 Aligned_cols=10 Identities=50% Similarity=1.119 Sum_probs=7.8
Q ss_pred eeecCceeec
Q 026487 158 AVVGDTFPVG 167 (238)
Q Consensus 158 avvGdTfpVG 167 (238)
-++|+|||+|
T Consensus 22 G~~G~~fpIa 31 (31)
T PF12477_consen 22 GVIGPTFPIA 31 (31)
T ss_pred cccccccccC
Confidence 4669999986
No 42
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=32.48 E-value=10 Score=39.46 Aligned_cols=33 Identities=36% Similarity=0.447 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHhcC------------------CCCCcceehhceeccccc
Q 026487 113 IEHLLQTAEAIRKDY------------------PDEDWLHLTGLIHDLGKV 145 (238)
Q Consensus 113 i~H~lQTAEaiR~d~------------------p~pDW~qLtGliHDLGKv 145 (238)
-+|.+.+.+.+.+-. ++++.+-|++|+||+||-
T Consensus 430 d~Htl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~lAaLlHDiGKg 480 (850)
T TIGR01693 430 DEHTLRTVVHLAPFARGRLAREHPLASELMPKIEDPELLYLAALLHDIGKG 480 (850)
T ss_pred hHHHHHHHHHHHHHhccccccccccHHHHHhccCCHHHHHHHHHHHHHhcC
Confidence 368888877765421 135578999999999993
No 43
>PRK03059 PII uridylyl-transferase; Provisional
Probab=31.95 E-value=22 Score=37.57 Aligned_cols=34 Identities=24% Similarity=0.439 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHh----c--------------CCCCCcceehhceecccc
Q 026487 111 PQIEHLLQTAEAIRK----D--------------YPDEDWLHLTGLIHDLGK 144 (238)
Q Consensus 111 pqi~H~lQTAEaiR~----d--------------~p~pDW~qLtGliHDLGK 144 (238)
+.-+|.+.|-+.+++ + -++++.+.|++|+||+||
T Consensus 440 tVd~Htl~~v~~l~~~~~~~~~~~~p~~~~~~~~~~~~~lL~LAaLlHDIGK 491 (856)
T PRK03059 440 TVDQHILMVLRNLRRFAMAEHAHEYPFCSQLIANFDRPWLLYVAALFHDIAK 491 (856)
T ss_pred cHhHHHHHHHHHHHHhhccccccccchHHHHHHhcCChhHHHHHHHHHhhcc
Confidence 444799998877653 1 123578899999999999
No 44
>PF05964 FYRN: F/Y-rich N-terminus; InterPro: IPR003888 The "FY-rich" domain N-terminal region is sometimes closely juxtaposed with the C-terminal region (IPR003889 from INTERPRO), but sometimes is far distant. It is of unknown function, but occurs frequently in chromatin-associated proteins like trithorax and its homologues.; GO: 0005634 nucleus; PDB: 2WZO_A.
Probab=31.62 E-value=19 Score=25.41 Aligned_cols=27 Identities=30% Similarity=0.551 Sum_probs=14.4
Q ss_pred ceeccccccccCCCCCCCCeeeecCceeeccc
Q 026487 138 LIHDLGKVLNLPSFGGLPQWAVVGDTFPVGCA 169 (238)
Q Consensus 138 liHDLGKvl~~p~fg~~~QWavvGdTfpVGC~ 169 (238)
.||.||+|... .|.|....=.||+|=.
T Consensus 5 ~v~sLG~i~~~-----~~~fh~~~~IyP~Gy~ 31 (54)
T PF05964_consen 5 TVHSLGKIVPD-----RPAFHSERYIYPVGYK 31 (54)
T ss_dssp EEEEEEE---S-----SGGGB-SS-B--EEEE
T ss_pred EEEECeEEeCC-----CCCccCCCEEeeCCEE
Confidence 38999999943 3567777778999843
No 45
>PRK14068 exodeoxyribonuclease VII small subunit; Provisional
Probab=30.88 E-value=82 Score=24.14 Aligned_cols=39 Identities=15% Similarity=0.147 Sum_probs=32.8
Q ss_pred ccccHHHHHHHhhhhcCC-CCCCCChHHHHHHHHHHHHHH
Q 026487 86 VEMSIWECCELLNDVVDE-SDPDLDEPQIEHLLQTAEAIR 124 (238)
Q Consensus 86 ~~MsI~EA~e~Ln~lVDe-SDPD~dlpqi~H~lQTAEaiR 124 (238)
.++|.-+|++.|.++|.. .++|++|.+...+++.+-.+-
T Consensus 4 ~~~sfEeal~~Le~IV~~LE~gdl~Leesl~lyeeG~~L~ 43 (76)
T PRK14068 4 ETQSFEEMMQELEQIVQKLDNETVSLEESLDLYQRGMKLS 43 (76)
T ss_pred CccCHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 578999999999999887 588999999988888776643
No 46
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=30.67 E-value=2.4e+02 Score=27.84 Aligned_cols=90 Identities=21% Similarity=0.281 Sum_probs=66.6
Q ss_pred CCCCCCccccccCCCCcc-chhhhHHHHHHHHHhhhhhHHHHHHHHHHHhcCCC-----------CccccHHHHHHHhhh
Q 026487 32 FLVPQTNSFGHTFRDYDA-EGERQEGVENFYRINHINQTYDFVKKMREEYGKLN-----------RVEMSIWECCELLND 99 (238)
Q Consensus 32 f~~P~~n~~~~~FR~Y~~-~~~r~~~V~~fY~~~H~~QTvdfv~~~~~~~~~~~-----------~~~MsI~EA~e~Ln~ 99 (238)
|..|.-|.-.-+|--|+. ....-..|+++|..--.. -.|++++..++|+..- -..-+..||++.|.+
T Consensus 115 FeePqPnppvVtfDVFD~p~pglpkpire~~~dVmed-P~eWArk~Vk~fgadmvTiHlIsTdPki~D~p~~EAak~lEd 193 (403)
T COG2069 115 FEEPQPNPPVVTFDVFDIPRPGLPKPIREHYDDVMED-PGEWARKCVKKFGADMVTIHLISTDPKIKDTPAKEAAKTLED 193 (403)
T ss_pred cCCCCCCCCeeEEEeccCCCCCCchhHHHHHHHHhhC-HHHHHHHHHHHhCCceEEEEeecCCccccCCCHHHHHHHHHH
Confidence 888888877778888875 333346799999986555 7899999999998521 124688999999998
Q ss_pred hcCC----------CCCCCChHHHHHHHHHHHH
Q 026487 100 VVDE----------SDPDLDEPQIEHLLQTAEA 122 (238)
Q Consensus 100 lVDe----------SDPD~dlpqi~H~lQTAEa 122 (238)
+++. -||..|--.++.+-..||.
T Consensus 194 vLqAVdvPiiiGGSGnpeKDpeVlekaAEvaEG 226 (403)
T COG2069 194 VLQAVDVPIIIGGSGNPEKDPEVLEKAAEVAEG 226 (403)
T ss_pred HHHhcCcCEEecCCCCCccCHHHHHHHHHhhcC
Confidence 7554 3788887667777666665
No 47
>TIGR03401 cyanamide_fam HD domain protein, cyanamide hydratase family. Members of this protein family are known, so far, in the Ascomycota, a branch of the Fungi, and contain an HD domain (pfam01966), found typically in various metal-dependent phosphohydrolases. The only characterized member of this family, from the soil fungus Myrothecium verrucaria, is cyanamide hydratase (EC 4.2.1.69), a zinc-containing homohexamer that adds water to the fertilizer cyanamide (NCNH2), a nitrile compound, to produce urea (NH2-CO-NH2). Homologs are likely to be nitrile hydratases.
Probab=29.67 E-value=25 Score=31.58 Aligned_cols=39 Identities=21% Similarity=0.174 Sum_probs=24.1
Q ss_pred CChHHHHHHHHHHHHHHh-c----CCCCCcceehhceecccccc
Q 026487 108 LDEPQIEHLLQTAEAIRK-D----YPDEDWLHLTGLIHDLGKVL 146 (238)
Q Consensus 108 ~dlpqi~H~lQTAEaiR~-d----~p~pDW~qLtGliHDLGKvl 146 (238)
.++.-+...+.+|.+|-+ + ..++.=+-+++|+||+|+.-
T Consensus 55 ~~~~Hs~RV~~~a~~ia~~e~~~~~~D~evl~lAALLHDIG~~~ 98 (228)
T TIGR03401 55 ETYNHSLRVYYYGLAIARDQFPEWDLSDETWFLTCLLHDIGTTD 98 (228)
T ss_pred hhhHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHhhcccc
Confidence 344344555556666633 2 22455567999999999853
No 48
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=29.62 E-value=52 Score=27.48 Aligned_cols=31 Identities=29% Similarity=0.488 Sum_probs=15.1
Q ss_pred CccccHHHHHHHhhhhcCCCCCCCChH----HHHHHHHHH
Q 026487 85 RVEMSIWECCELLNDVVDESDPDLDEP----QIEHLLQTA 120 (238)
Q Consensus 85 ~~~MsI~EA~e~Ln~lVDeSDPD~dlp----qi~H~lQTA 120 (238)
...||+.||+..|| |++ .+++. +-+|||..-
T Consensus 52 ~~~Mtl~EA~~ILn--v~~---~~~~eeI~k~y~~Lf~~N 86 (127)
T PF03656_consen 52 SKGMTLDEARQILN--VKE---ELSREEIQKRYKHLFKAN 86 (127)
T ss_dssp -----HHHHHHHHT----G-----SHHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHcC--CCC---ccCHHHHHHHHHHHHhcc
Confidence 34799999999999 555 33333 336666543
No 49
>TIGR01346 isocit_lyase isocitrate lyase. Isocitrate lyase and malate synthase are the enzymes of the glyoxylate shunt, a pathway associated with the TCA cycle.
Probab=28.42 E-value=27 Score=35.63 Aligned_cols=40 Identities=25% Similarity=0.652 Sum_probs=32.2
Q ss_pred CCChHHHHHHHHHHHHHHhcCCCC----------Ccc------eehhceecccccc
Q 026487 107 DLDEPQIEHLLQTAEAIRKDYPDE----------DWL------HLTGLIHDLGKVL 146 (238)
Q Consensus 107 D~dlpqi~H~lQTAEaiR~d~p~p----------DW~------qLtGliHDLGKvl 146 (238)
.++-|.+..+-+.||+||+.+|+. .|. ++-.|+-||||+=
T Consensus 386 ET~~Pdl~~A~~Fa~~v~~~~P~k~LaYN~SPSFNW~~~~~d~~~~~F~~~L~~lG 441 (527)
T TIGR01346 386 ETSTPDLELAKKFAEGVKSKFPDQLLAYNLSPSFNWSAHMEDDEIAKFIQELGDLG 441 (527)
T ss_pred cCCCCCHHHHHHHHHHHHHHCCCCeEEecCCCCccccccCCHHHHHHHHHHHHhcC
Confidence 566788999999999999999854 253 6778899999943
No 50
>PRK14064 exodeoxyribonuclease VII small subunit; Provisional
Probab=27.91 E-value=1e+02 Score=23.46 Aligned_cols=41 Identities=12% Similarity=0.113 Sum_probs=33.1
Q ss_pred CccccHHHHHHHhhhhcCC-CCCCCChHHHHHHHHHHHHHHh
Q 026487 85 RVEMSIWECCELLNDVVDE-SDPDLDEPQIEHLLQTAEAIRK 125 (238)
Q Consensus 85 ~~~MsI~EA~e~Ln~lVDe-SDPD~dlpqi~H~lQTAEaiR~ 125 (238)
+.++|.-+|+..|.++|.. .+++++|.+..-+++.+-.+-+
T Consensus 3 ~k~~sfEe~l~~LE~IV~~LE~~~l~Leesl~~ye~G~~L~k 44 (75)
T PRK14064 3 TKKKTFEEAIAELETIVEALENGSASLEDSLDMYQKGIELTK 44 (75)
T ss_pred CCcCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 3568999999999999987 4789999988888887766433
No 51
>PF06784 UPF0240: Uncharacterised protein family (UPF0240); InterPro: IPR009622 This is a group of proteins of unknown function.
Probab=27.71 E-value=64 Score=28.20 Aligned_cols=34 Identities=32% Similarity=0.532 Sum_probs=26.9
Q ss_pred CCCccccHHHHHHHhhhhcCCCCCCCChHHHHHHHHHHHHHHhcC
Q 026487 83 LNRVEMSIWECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRKDY 127 (238)
Q Consensus 83 ~~~~~MsI~EA~e~Ln~lVDeSDPD~dlpqi~H~lQTAEaiR~d~ 127 (238)
..++++||.||+++|+..- .+|.+ .|||.|-++|
T Consensus 113 vPkGkltl~qal~lL~~Hq--~~P~~---------WtaekIA~eY 146 (179)
T PF06784_consen 113 VPKGKLTLRQALELLNNHQ--LDPET---------WTAEKIAQEY 146 (179)
T ss_pred CCCCceeHHHHHHHHHHhc--cCccc---------cCHHHHHHHh
Confidence 4588999999999999853 34443 3699999998
No 52
>TIGR02578 cas_TM1811_Csm1 CRISPR-associated protein, Csm1 family. The family is designated Csm2, for CRISPR/Cas Subtype Mtube Protein 2. A typical example is TM1811 from Thermotoga maritima. CRISPR are Clustered Regularly Interspaced Short Palindromic Repeats. This protein family belongs to a conserved gene cluster regularly found near CRISPR repeats.
Probab=27.07 E-value=21 Score=36.74 Aligned_cols=14 Identities=43% Similarity=0.921 Sum_probs=12.2
Q ss_pred eehhceeccccccc
Q 026487 134 HLTGLIHDLGKVLN 147 (238)
Q Consensus 134 qLtGliHDLGKvl~ 147 (238)
.+.||+||+||+..
T Consensus 2 ~~~aLLHDIGK~~~ 15 (648)
T TIGR02578 2 AVAALLHDIGKVIR 15 (648)
T ss_pred chhhhhhccchhhh
Confidence 46799999999995
No 53
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=26.99 E-value=45 Score=34.51 Aligned_cols=35 Identities=29% Similarity=0.200 Sum_probs=26.8
Q ss_pred CChHHHHHHHHHHHHHHhcCCCCCc-ceehhceecccc
Q 026487 108 LDEPQIEHLLQTAEAIRKDYPDEDW-LHLTGLIHDLGK 144 (238)
Q Consensus 108 ~dlpqi~H~lQTAEaiR~d~p~pDW-~qLtGliHDLGK 144 (238)
...|-|.|.+++|+.+..-+. |. ...+||+||.=.
T Consensus 16 sg~PYi~Hpl~VA~iL~~~~~--D~~~i~AaLLHDvvE 51 (683)
T TIGR00691 16 SGEPYIIHPLAVALILAELGM--DEETVCAALLHDVIE 51 (683)
T ss_pred CCCcHHHHHHHHHHHHHHhCC--CHHHHHHHhccchHh
Confidence 446778999999999987654 44 366899999743
No 54
>TIGR02692 tRNA_CCA_actino tRNA adenylyltransferase. The enzyme tRNA adenylyltransferase, also called tRNA-nucleotidyltransferase and CCA-adding enzyme, can add or repair the required CCA triplet at the 3'-end of tRNA molecules. Genes encoding tRNA include the CCA tail in some but not all bacteria, and this enzyme may be required for viability. Members of this family represent a distinct clade within the larger family pfam01743 (tRNA nucleotidyltransferase/poly(A) polymerase family protein). The example from Streptomyces coelicolor was shown to act as a CCA-adding enzyme and not as a poly(A) polymerase.
Probab=26.16 E-value=39 Score=32.82 Aligned_cols=38 Identities=26% Similarity=0.291 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHHHHHhcCC-CCC-cceehhceeccccccc
Q 026487 110 EPQIEHLLQTAEAIRKDYP-DED-WLHLTGLIHDLGKVLN 147 (238)
Q Consensus 110 lpqi~H~lQTAEaiR~d~p-~pD-W~qLtGliHDLGKvl~ 147 (238)
.+...|.+++-+.+.+--. .++ .+.|+.|+||+||-..
T Consensus 257 ~~v~~Htl~vl~~~~~l~~~~~~~~l~lAaLLHDiGK~~t 296 (466)
T TIGR02692 257 KDVYEHSLTVLRQAIDLEDDGPDLVLRWAALLHDIGKPAT 296 (466)
T ss_pred CcHHHHHHHHHHHHHhccccccCHHHHHHHHHhhccCCCC
Confidence 3556899988777643211 234 6899999999999653
No 55
>cd01282 HTH_MerR-like_sg3 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 3). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=25.86 E-value=2.9e+02 Score=21.60 Aligned_cols=63 Identities=22% Similarity=0.377 Sum_probs=32.6
Q ss_pred CCCCCCCccccccCCCCccchhhhHHHHHHHHHhhhhhHHHHHHHHHHHhcCCCCccccHHHHHHHhhhhcCCCCCCCCh
Q 026487 31 GFLVPQTNSFGHTFRDYDAEGERQEGVENFYRINHINQTYDFVKKMREEYGKLNRVEMSIWECCELLNDVVDESDPDLDE 110 (238)
Q Consensus 31 ~f~~P~~n~~~~~FR~Y~~~~~r~~~V~~fY~~~H~~QTvdfv~~~~~~~~~~~~~~MsI~EA~e~Ln~lVDeSDPD~dl 110 (238)
|...|.- ..+.+|.|+. .+ |. ++.+++..++ .-||+-|.-++|+......++..+.
T Consensus 24 GLl~p~r--~~~g~R~Y~~-~~----~~----------~l~~I~~lr~-------~G~sl~eI~~~l~~~~~~~~~~~~~ 79 (112)
T cd01282 24 GLLVPER--SANGYRDYDE-AA----VD----------RVRQIRRLLA-------AGLTLEEIREFLPCLRGGEPTFRPC 79 (112)
T ss_pred CCCCCCc--CCCCCeecCH-HH----HH----------HHHHHHHHHH-------cCCCHHHHHHHHHHhhCCCccCCcc
Confidence 7777853 3457999985 22 22 2333333332 2377777777666544333233444
Q ss_pred HHHHHHH
Q 026487 111 PQIEHLL 117 (238)
Q Consensus 111 pqi~H~l 117 (238)
+++..++
T Consensus 80 ~~~~~~l 86 (112)
T cd01282 80 PDLLAVL 86 (112)
T ss_pred HHHHHHH
Confidence 4444433
No 56
>PRK14067 exodeoxyribonuclease VII small subunit; Provisional
Probab=25.21 E-value=1.2e+02 Score=23.46 Aligned_cols=39 Identities=15% Similarity=0.161 Sum_probs=32.2
Q ss_pred CccccHHHHHHHhhhhcCC-CCCCCChHHHHHHHHHHHHH
Q 026487 85 RVEMSIWECCELLNDVVDE-SDPDLDEPQIEHLLQTAEAI 123 (238)
Q Consensus 85 ~~~MsI~EA~e~Ln~lVDe-SDPD~dlpqi~H~lQTAEai 123 (238)
...+|.-+|++.|.++|.. .+++++|.+..-+++-+-++
T Consensus 4 ~k~~sfEeal~~LEeIV~~LE~~~l~Lees~~lyeeG~~L 43 (80)
T PRK14067 4 KKTADFEQQLARLQEIVDALEGGDLPLEESVALYKEGLGL 43 (80)
T ss_pred cccCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 4568999999999999887 58899999888888776653
No 57
>COG4198 Uncharacterized conserved protein [Function unknown]
Probab=25.16 E-value=48 Score=32.73 Aligned_cols=32 Identities=38% Similarity=0.692 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHhcCCCCCcc---eehhc-eeccc
Q 026487 112 QIEHLLQTAEAIRKDYPDEDWL---HLTGL-IHDLG 143 (238)
Q Consensus 112 qi~H~lQTAEaiR~d~p~pDW~---qLtGl-iHDLG 143 (238)
.|+||+-+|.+-+.-=|+--|| -+.|| ||++|
T Consensus 370 ~~~~Lm~v~ds~kimPpKSTwFePKl~SGL~Ih~~~ 405 (405)
T COG4198 370 DIEDLMEVLDSGKIMPPKSTWFEPKLLSGLFIHVLG 405 (405)
T ss_pred CHHHHHhhhhhCCcCCCcccccccccccceeeeecC
Confidence 3577777777766665566677 57777 77664
No 58
>PF10809 DUF2732: Protein of unknown function (DUF2732); InterPro: IPR020126 This entry represents a group of proteins with no known function
Probab=24.56 E-value=2.1e+02 Score=22.26 Aligned_cols=62 Identities=15% Similarity=0.147 Sum_probs=41.3
Q ss_pred ccccccCCCCccchhhhHHHHHHHHHhhhhhHHHHHHHHHHHhcCCCCccccHHHHHHHhhh
Q 026487 38 NSFGHTFRDYDAEGERQEGVENFYRINHINQTYDFVKKMREEYGKLNRVEMSIWECCELLND 99 (238)
Q Consensus 38 n~~~~~FR~Y~~~~~r~~~V~~fY~~~H~~QTvdfv~~~~~~~~~~~~~~MsI~EA~e~Ln~ 99 (238)
|.+...+....++.....-+.+-=.+-.+.|+..|..+...==..-...+||--||+|+|..
T Consensus 3 n~e~~~~~~~~d~~~l~~lL~~AR~eeRk~~A~~~S~RL~~LA~hi~~~~ls~~E~~ELLrq 64 (77)
T PF10809_consen 3 NTETRSMKTGADAASLNELLNKARMEERKDRADAFSSRLDALAAHIANEELSAVEAAELLRQ 64 (77)
T ss_pred cchhccccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 44444555555432244555666677888888888776555444455679999999999975
No 59
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=24.09 E-value=58 Score=29.44 Aligned_cols=21 Identities=33% Similarity=0.357 Sum_probs=18.2
Q ss_pred CCChHHHHHHHHHHHHHHhcC
Q 026487 107 DLDEPQIEHLLQTAEAIRKDY 127 (238)
Q Consensus 107 D~dlpqi~H~lQTAEaiR~d~ 127 (238)
-+-|.-|+|++=|+||||.++
T Consensus 144 ~~~LGtINHtlLt~eal~~~g 164 (223)
T COG0132 144 GIKLGTINHTLLTVEALRARG 164 (223)
T ss_pred cCCccHHHHHHHHHHHHHHCC
Confidence 345777999999999999997
No 60
>PRK13298 tRNA CCA-pyrophosphorylase; Provisional
Probab=23.88 E-value=20 Score=35.27 Aligned_cols=36 Identities=17% Similarity=0.067 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHhcCCCCCcceehhceeccccccc
Q 026487 111 PQIEHLLQTAEAIRKDYPDEDWLHLTGLIHDLGKVLN 147 (238)
Q Consensus 111 pqi~H~lQTAEaiR~d~p~pDW~qLtGliHDLGKvl~ 147 (238)
....|.+.+-+.+.+.- ..-++-+++|+||+||-..
T Consensus 228 d~~~htl~~l~~~~~~~-~~l~lR~AaLlHDiGK~~t 263 (417)
T PRK13298 228 NLGNYILMGLSKISKLT-KDIDIRFSYLCQFLGSMIP 263 (417)
T ss_pred hHHHHHHHHHHHHHhcC-CCHHHHHHHHHhhhcCCCC
Confidence 33567776666655443 2346778999999999753
No 61
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=23.74 E-value=81 Score=29.01 Aligned_cols=37 Identities=24% Similarity=0.167 Sum_probs=26.3
Q ss_pred cHHHHHHHhhhhc---CCCCCCCChHHHHHHHHHHHHHHhcC
Q 026487 89 SIWECCELLNDVV---DESDPDLDEPQIEHLLQTAEAIRKDY 127 (238)
Q Consensus 89 sI~EA~e~Ln~lV---DeSDPD~dlpqi~H~lQTAEaiR~d~ 127 (238)
.|-+|++++|+|- =++|+++.+ .-+.+.+.|-||+..
T Consensus 79 ~Ie~Aie~in~l~PeiLd~n~~l~F--~Lq~q~lIEliR~~~ 118 (228)
T KOG2659|consen 79 QIEEAIEKVNQLNPEILDTNRELFF--HLQQLHLIELIREGK 118 (228)
T ss_pred cHHHHHHHHHHhChHHHccchhHHH--HHHHHHHHHHHHhhh
Confidence 5789999999873 334555544 456677899999874
No 62
>COG1639 Predicted signal transduction protein [Signal transduction mechanisms]
Probab=23.22 E-value=76 Score=30.04 Aligned_cols=73 Identities=23% Similarity=0.210 Sum_probs=45.7
Q ss_pred HHHHhcCCCCccccHHHHHHHhh-----hhc-------CCCCCCCChHHH----HHHHHHHHHH----HhcC-CCCCcce
Q 026487 76 MREEYGKLNRVEMSIWECCELLN-----DVV-------DESDPDLDEPQI----EHLLQTAEAI----RKDY-PDEDWLH 134 (238)
Q Consensus 76 ~~~~~~~~~~~~MsI~EA~e~Ln-----~lV-------DeSDPD~dlpqi----~H~lQTAEai----R~d~-p~pDW~q 134 (238)
+-.-|.++++.--||-||+..|= +|| --+.|+..--+. ++++-||-.+ |.-+ ++++=.-
T Consensus 65 ANS~yfg~~~~i~tl~~Ai~rLG~~~v~NLv~a~a~~~~~~~~~~~~~~~~~~w~~a~~~A~ia~~La~~~g~~~~~~~y 144 (289)
T COG1639 65 ANSPYFGFPREITTLNEAIVRLGIGLVINLVLALAEQAIQSVNSSSAEDRQLFWDTAIETAMIAEGLARALGRADSDEAY 144 (289)
T ss_pred hcchhcCCCCccCcHHHHHHHHhHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCcccHHHHH
Confidence 33457778888888888877542 111 112333332223 5555565553 3444 5667778
Q ss_pred ehhceecccccccc
Q 026487 135 LTGLIHDLGKVLNL 148 (238)
Q Consensus 135 LtGliHDLGKvl~~ 148 (238)
++||+|.+|+|+++
T Consensus 145 ~~gLLh~lG~l~ll 158 (289)
T COG1639 145 TAGLLHNLGILVLL 158 (289)
T ss_pred HHHHHHHccHHHHH
Confidence 99999999999987
No 63
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=22.43 E-value=93 Score=32.54 Aligned_cols=53 Identities=19% Similarity=0.257 Sum_probs=32.3
Q ss_pred HHHHHHHhhhhcCCCCCCCChHHHHHHHHHHHHHHhcCCCCCcc-eehhceecccc
Q 026487 90 IWECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRKDYPDEDWL-HLTGLIHDLGK 144 (238)
Q Consensus 90 I~EA~e~Ln~lVDeSDPD~dlpqi~H~lQTAEaiR~d~p~pDW~-qLtGliHDLGK 144 (238)
+..|+++-.......-.....|-|.|.+++|+.+..-+ -|+- ..+||+||.-.
T Consensus 23 l~~A~~~A~~aH~gQ~rksGePYi~Hpl~VA~iLa~l~--~D~~ti~AaLLHDvvE 76 (702)
T PRK11092 23 LRQAYLVARDAHEGQTRSSGEPYITHPVAVACILAEMR--LDYETLMAALLHDVIE 76 (702)
T ss_pred HHHHHHHHHHhccCCcCCCCCcHHHHHHHHHHHHHHcC--CCHHHHHHhcccchhh
Confidence 34444444333222222234566899999999988654 3544 67899999743
No 64
>COG1713 Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]
Probab=22.33 E-value=58 Score=29.06 Aligned_cols=39 Identities=38% Similarity=0.573 Sum_probs=27.9
Q ss_pred CChHHHHHHHHHHHHHHh---cC-CCCCcceehhceecccccc
Q 026487 108 LDEPQIEHLLQTAEAIRK---DY-PDEDWLHLTGLIHDLGKVL 146 (238)
Q Consensus 108 ~dlpqi~H~lQTAEaiR~---d~-p~pDW~qLtGliHDLGKvl 146 (238)
++.+.++|.+-.||+.++ .| -++.=--++|+.||+.|-+
T Consensus 14 l~~kR~~H~l~V~~~A~~LA~~y~~d~~kA~~AgilHD~aK~~ 56 (187)
T COG1713 14 LSEKRFEHCLGVAETAIELAEAYGLDPEKAYLAGILHDIAKEL 56 (187)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhC
Confidence 344689999988877653 22 1333467999999999977
No 65
>PF07514 TraI_2: Putative helicase; InterPro: IPR011119 The members of this family are restricted to the proteobacteria. Some members have been annotated as helicase, conjugative relaxase or nickase. The majority contain an HD domain, which is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity. These enzymes appear to be involved in the nucleic acid metabolism, signal transduction and possibly other functions in bacteria.
Probab=21.76 E-value=27 Score=32.91 Aligned_cols=51 Identities=29% Similarity=0.584 Sum_probs=29.7
Q ss_pred hhhhcCCCCCCCC---hHHHHHHHHHHHH-HHhc--C--C-----------CCCcc---eehhceeccccccc
Q 026487 97 LNDVVDESDPDLD---EPQIEHLLQTAEA-IRKD--Y--P-----------DEDWL---HLTGLIHDLGKVLN 147 (238)
Q Consensus 97 Ln~lVDeSDPD~d---lpqi~H~lQTAEa-iR~d--~--p-----------~pDW~---qLtGliHDLGKvl~ 147 (238)
+-.++..|...-- =.-+.|.|++|.. +|-. + | .+.|- -++||.||+||++.
T Consensus 49 ~vQ~LPASe~hhha~~GGll~h~LEva~~Alrl~~~~~lp~~a~pEe~~~q~~~W~~avf~AALlhdlgk~l~ 121 (327)
T PF07514_consen 49 FVQLLPASESHHHAGPGGLLDHTLEVAAYALRLRQGYMLPPGATPEEQAAQEPAWRYAVFYAALLHDLGKPLT 121 (327)
T ss_pred HHhcCCCCCCCCcCCCCcHHHHHHHHHHHHHHHhcCeecCCCCChhhHHHHHhhhHHHHHHHHHHhccCccee
Confidence 3345566554222 1125888887754 4421 1 1 23576 57899999999664
No 66
>PRK10119 putative hydrolase; Provisional
Probab=21.29 E-value=1e+02 Score=27.94 Aligned_cols=46 Identities=17% Similarity=0.134 Sum_probs=33.5
Q ss_pred hhcCCCCCCCChHHHHHHHHHHHHHHhc-CCCCCcceehhceecccc
Q 026487 99 DVVDESDPDLDEPQIEHLLQTAEAIRKD-YPDEDWLHLTGLIHDLGK 144 (238)
Q Consensus 99 ~lVDeSDPD~dlpqi~H~lQTAEaiR~d-~p~pDW~qLtGliHDLGK 144 (238)
+.....||-=|+.-|....++|..|-+. +.+..-+.|..++||+|-
T Consensus 16 ~~l~~~~~~HD~~Hi~RV~~lA~~Ia~~e~~D~~vv~lAAlLHDv~d 62 (231)
T PRK10119 16 NHHQHQDAAHDICHFRRVWATAQKLAADDDVDMLVVLTACYFHDIVS 62 (231)
T ss_pred HHhhcCCCccChHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhcch
Confidence 3334457777888888888888888543 345667889999999975
No 67
>PF11884 DUF3404: Domain of unknown function (DUF3404); InterPro: IPR021821 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 260 amino acids in length. This domain is found associated with PF02518 from PFAM, PF00512 from PFAM.
Probab=21.15 E-value=50 Score=30.95 Aligned_cols=79 Identities=23% Similarity=0.429 Sum_probs=52.2
Q ss_pred hhHHHHHHHHHhhhhhHH-HHH-HHHHHHhcCCCCccccHHHHHHHhhhhcCCC-CCCCC---hHHHHHHHHHHHHHHhc
Q 026487 53 RQEGVENFYRINHINQTY-DFV-KKMREEYGKLNRVEMSIWECCELLNDVVDES-DPDLD---EPQIEHLLQTAEAIRKD 126 (238)
Q Consensus 53 r~~~V~~fY~~~H~~QTv-dfv-~~~~~~~~~~~~~~MsI~EA~e~Ln~lVDeS-DPD~d---lpqi~H~lQTAEaiR~d 126 (238)
-+++...||++--..+++ .+- +....+|-+ . + |..+| -|+++ +-.|+-+.|+|+-|+..
T Consensus 12 Lper~~~f~~~~~~~~~~~~~~~~~lq~~YP~---~---------L---L~p~S~yPq~~~yp~~diq~Ly~~~~~C~~~ 76 (262)
T PF11884_consen 12 LPERWQAFYQLFWQSSAIASYDIRELQSQYPT---R---------L---LTPDSMYPQFSQYPWQDIQQLYQLAQTCQGP 76 (262)
T ss_pred hHHHHHHHHHHHhhhCcccccCHHHHHhhCCh---h---------h---cCccccCCCcccCCHHHHHHHHHHHhhcCCC
Confidence 457789999987655433 222 222225543 1 1 22333 57776 78899999999988866
Q ss_pred CC---------------------CCCcceehhceecccccc
Q 026487 127 YP---------------------DEDWLHLTGLIHDLGKVL 146 (238)
Q Consensus 127 ~p---------------------~pDW~qLtGliHDLGKvl 146 (238)
-| .+.||.-.|+||-.|.=.
T Consensus 77 ~p~sP~ite~l~FerAlC~g~~L~~~WFar~~~iHP~GGSY 117 (262)
T PF11884_consen 77 LPLSPLITEPLVFERALCQGTALPPRWFARSGLIHPGGGSY 117 (262)
T ss_pred CCCCcccccchHHHHHHhCCCCCChHHHHhCCCcCCCCCcH
Confidence 54 346999999999998654
No 68
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=20.99 E-value=1.9e+02 Score=28.38 Aligned_cols=56 Identities=23% Similarity=0.344 Sum_probs=32.4
Q ss_pred HHHHHHHhhhhcCCCCCCCChHHHHHHHHHHHHHHhcCC----CCCcceehhceecccccc
Q 026487 90 IWECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRKDYP----DEDWLHLTGLIHDLGKVL 146 (238)
Q Consensus 90 I~EA~e~Ln~lVDeSDPD~dlpqi~H~lQTAEaiR~d~p----~pDW~qLtGliHDLGKvl 146 (238)
..+.++-|..++..-|+.+.- -+.-.-|+++.+-+... .-|=+.+.+.+||.|||-
T Consensus 168 ~~~t~~~L~~~~E~R~~etg~-H~~Rv~~~~~~lAe~lgLse~~v~~i~~AapLHDIGKva 227 (360)
T COG3437 168 LDETLEELAALLEVRDYETGD-HLERVAQYSELLAELLGLSEEEVDLIKKAAPLHDIGKVA 227 (360)
T ss_pred HHHHHHHHHHHHHhcccchhh-HHHHHHHHHHHHHHHhCCCHHHHHHHHhccchhhccccc
Confidence 337788888888666666652 11222222223222221 125668889999999986
No 69
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=20.94 E-value=99 Score=29.00 Aligned_cols=60 Identities=20% Similarity=0.202 Sum_probs=40.3
Q ss_pred hhHHHHHHHHHHHhcCCC--CccccHHHHHHHhhh-----hcCCCCCCCChHHHHHHHHHHHHHHhcC
Q 026487 67 NQTYDFVKKMREEYGKLN--RVEMSIWECCELLND-----VVDESDPDLDEPQIEHLLQTAEAIRKDY 127 (238)
Q Consensus 67 ~QTvdfv~~~~~~~~~~~--~~~MsI~EA~e~Ln~-----lVDeSDPD~dlpqi~H~lQTAEaiR~d~ 127 (238)
.||++.|.. ++-|-++. .++||.|||+|.+.+ ++=.||-+.-.+.+--.=.||=.|++.|
T Consensus 167 ~etv~~vld-~e~~vGlTvqPgKlt~~eAveIV~ey~~~r~ilnSD~~s~~sd~lavprtal~m~~~g 233 (254)
T COG1099 167 EETVDEVLD-EEFYVGLTVQPGKLTVEEAVEIVREYGAERIILNSDAGSAASDPLAVPRTALEMEERG 233 (254)
T ss_pred HHHHHHHHh-ccceEEEEecCCcCCHHHHHHHHHHhCcceEEEecccccccccchhhhHHHHHHHHhc
Confidence 478887764 45566654 689999999999975 4556766655555555555665555443
No 70
>PRK07094 biotin synthase; Provisional
Probab=20.61 E-value=1.7e+02 Score=26.47 Aligned_cols=32 Identities=31% Similarity=0.512 Sum_probs=23.5
Q ss_pred ccHHHHHHHhhhhcCCCCCCCChHHHHHHHHHHHHHHhcC
Q 026487 88 MSIWECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRKDY 127 (238)
Q Consensus 88 MsI~EA~e~Ln~lVDeSDPD~dlpqi~H~lQTAEaiR~d~ 127 (238)
+|..||+++|+. +|. ..++-|+++|..||+.+
T Consensus 1 ~t~~e~~~ll~~------~~~--~~~~~L~~~A~~~r~~~ 32 (323)
T PRK07094 1 LTRDEILELLSN------DDE--EELKYLFKAADEVRKKY 32 (323)
T ss_pred CCHHHHHHHhcC------CCH--HHHHHHHHHHHHHHHHh
Confidence 467899998854 121 23567999999999887
Done!