Query 026488
Match_columns 238
No_of_seqs 125 out of 1118
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 08:39:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026488.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026488hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03030 cationic peroxidase; 100.0 1.9E-80 4.2E-85 556.8 17.6 228 1-232 87-324 (324)
2 cd00693 secretory_peroxidase H 100.0 1.8E-75 4E-80 523.1 18.8 227 1-231 67-298 (298)
3 PLN02608 L-ascorbate peroxidas 100.0 9.3E-57 2E-61 398.5 16.0 187 1-229 66-257 (289)
4 PF00141 peroxidase: Peroxidas 100.0 2.5E-57 5.5E-62 393.4 7.6 184 1-196 46-230 (230)
5 cd00691 ascorbate_peroxidase A 100.0 1.9E-54 4.2E-59 379.5 14.7 178 1-217 65-251 (253)
6 PLN02879 L-ascorbate peroxidas 100.0 6.7E-54 1.5E-58 374.4 16.2 175 1-217 69-248 (251)
7 PLN02364 L-ascorbate peroxidas 100.0 3.6E-53 7.7E-58 370.3 15.8 174 1-216 68-247 (250)
8 cd00692 ligninase Ligninase an 100.0 2.8E-52 6.1E-57 375.9 15.9 188 1-233 80-288 (328)
9 cd00649 catalase_peroxidase_1 100.0 2.9E-51 6.3E-56 375.1 15.8 214 2-223 107-402 (409)
10 TIGR00198 cat_per_HPI catalase 100.0 2.9E-49 6.3E-54 382.3 16.2 215 2-222 117-408 (716)
11 cd00314 plant_peroxidase_like 100.0 3E-47 6.4E-52 334.8 12.7 179 1-213 54-255 (255)
12 PRK15061 catalase/hydroperoxid 100.0 1.6E-45 3.5E-50 354.7 16.2 213 2-222 119-414 (726)
13 cd08201 plant_peroxidase_like_ 100.0 1.8E-38 3.9E-43 277.3 11.2 171 3-213 83-264 (264)
14 cd08200 catalase_peroxidase_2 100.0 9.1E-35 2E-39 257.0 12.6 178 2-215 67-296 (297)
15 PRK15061 catalase/hydroperoxid 100.0 7.5E-30 1.6E-34 246.5 13.0 178 2-216 492-722 (726)
16 TIGR00198 cat_per_HPI catalase 100.0 4.9E-30 1.1E-34 248.9 11.4 175 2-216 485-710 (716)
17 COG0376 KatG Catalase (peroxid 100.0 4.3E-29 9.4E-34 232.1 13.5 207 2-216 132-417 (730)
18 COG0376 KatG Catalase (peroxid 99.4 2.5E-12 5.4E-17 120.9 10.1 167 8-215 511-725 (730)
19 PF11895 DUF3415: Domain of un 85.2 0.91 2E-05 33.1 2.7 30 199-232 2-31 (80)
20 KOG0400 40S ribosomal protein 53.0 9 0.0002 30.7 1.7 35 76-110 31-66 (151)
21 PTZ00411 transaldolase-like pr 48.3 1.5E+02 0.0033 27.3 9.2 48 45-92 180-230 (333)
22 PRK05264 transcriptional repre 38.5 27 0.00059 26.2 2.2 46 179-229 35-82 (105)
23 cd00490 Met_repressor_MetJ Met 36.7 30 0.00065 25.8 2.2 46 179-229 34-81 (103)
24 PLN00017 photosystem I reactio 31.8 27 0.00059 25.7 1.3 21 192-212 37-57 (90)
25 TIGR00874 talAB transaldolase. 29.8 3.6E+02 0.0077 24.8 8.5 51 45-95 168-221 (317)
26 PF01340 MetJ: Met Apo-repress 23.4 28 0.00061 26.0 0.1 31 179-209 34-66 (104)
27 COG3060 MetJ Transcriptional r 23.1 82 0.0018 23.3 2.5 31 179-209 35-67 (105)
28 COG2877 KdsA 3-deoxy-D-manno-o 23.1 51 0.0011 29.3 1.6 33 6-38 72-115 (279)
29 PF11020 DUF2610: Domain of un 20.5 1.6E+02 0.0035 21.5 3.5 31 11-41 49-79 (82)
30 PF09533 DUF2380: Predicted li 20.1 1.2E+02 0.0027 25.6 3.2 32 78-109 107-138 (188)
No 1
>PLN03030 cationic peroxidase; Provisional
Probab=100.00 E-value=1.9e-80 Score=556.80 Aligned_cols=228 Identities=37% Similarity=0.646 Sum_probs=215.5
Q ss_pred CCCCCCcchHHHHHHHHHHHHhhCCCcccHHHHHHHHhhhhHhhcCCCccccCCCCCCCCCchhhhhhccCCCCCCCHHH
Q 026488 1 MDRSFGMRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSV 80 (238)
Q Consensus 1 ~~~N~~l~g~~~i~~iK~~le~~c~~~VScADiialAa~~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~ 80 (238)
+++|.+||||++|+.||+++|++||++|||||||+|||||||+++|||.|+|++||+|+++|...++. +||.|+.++++
T Consensus 87 a~~N~~l~Gf~~i~~iK~~~e~~CPg~VSCADilalAarDaV~~~gGP~~~v~~GRrDg~~s~~~~~~-~LP~p~~~~~~ 165 (324)
T PLN03030 87 ALPNLLLRGYDVIDDAKTQLEAACPGVVSCADILALAARDSVVLTNGLTWPVPTGRRDGRVSLASDAS-NLPGFTDSIDV 165 (324)
T ss_pred CCCCcCcchHHHHHHHHHHHHhhCCCcccHHHHHHHHhhccccccCCCceeeeccccCCCCCCccccc-CCcCCCCCHHH
Confidence 57899999999999999999999999999999999999999999999999999999999998877664 89999999999
Q ss_pred HHHHHHhcCCCCCCceeeeccccccccccccccccccC------CCCCCCCcchhhHhhhcCCCCCCCCCCCccccCCCC
Q 026488 81 VLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYP------EVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRG 154 (238)
Q Consensus 81 l~~~F~~~Gl~~~elVaL~GaHtiG~~~~~~f~~rl~~------~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~~~~D~~ 154 (238)
|++.|+++||+.+|||+||||||||++||.+|.+|||| .+||+|||.|+..|++.||. .++....+++|+.
T Consensus 166 l~~~F~~~Gl~~~DlVaLsGAHTiG~ahC~~f~~Rlynf~~~~~~~Dp~~d~~~~~~L~~~Cp~---~~~~~~~~~lD~~ 242 (324)
T PLN03030 166 QKQKFAAKGLNTQDLVTLVGGHTIGTTACQFFRYRLYNFTTTGNGADPSIDASFVPQLQALCPQ---NGDGSRRIALDTG 242 (324)
T ss_pred HHHHHHHcCCCHHHheeeeeccccceeeeeccccccccccCCCCCCCCchhHHHHHHHhccCCC---CCCCCccccCCCC
Confidence 99999999999999999999999999999999999997 36999999999999999995 2222346789999
Q ss_pred CCCccChHHHHHhhcccccchhhhhhhcCcCcHHHHHHHhhcH----HHHHHHHHHHHHHHhhCCCCCCCCCcccccccc
Q 026488 155 TPMVLDNNYYRNILDNKGLMMVDHQLATDKRTRPYVKKMAKSQ----DYFFKEFSRAITLLSENNPLTGTKGEIRKVCNL 230 (238)
Q Consensus 155 tp~~fDn~Yy~~l~~~~gll~SD~~L~~d~~t~~~v~~yA~~~----~~F~~~Fa~Am~Km~~l~v~tG~~GeiR~~C~~ 230 (238)
||.+|||+||++|++++|+|+|||+|+.|++|+++|++||.|+ ++|+++|++||+||++|+|+||.+|||||+|+.
T Consensus 243 Tp~~FDn~Yy~nll~~rGlL~SDq~L~~d~~T~~~V~~~A~~~~~~~~~F~~~Fa~AmvKMg~i~VlTG~~GEIRk~C~~ 322 (324)
T PLN03030 243 SSNRFDASFFSNLKNGRGILESDQKLWTDASTRTFVQRFLGVRGLAGLNFNVEFGRSMVKMSNIGVKTGTNGEIRKVCSA 322 (324)
T ss_pred CCcccccHHHHHHHhcCCCcCCchHhhcCccHHHHHHHHhcccccchhhhHHHHHHHHHHHccCCCCCCCCCceeccccc
Confidence 9999999999999999999999999999999999999999875 599999999999999999999999999999999
Q ss_pred cc
Q 026488 231 AN 232 (238)
Q Consensus 231 ~n 232 (238)
||
T Consensus 323 vN 324 (324)
T PLN03030 323 IN 324 (324)
T ss_pred cC
Confidence 98
No 2
>cd00693 secretory_peroxidase Horseradish peroxidase and related secretory plant peroxidases. Secretory peroxidases belong to class III of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class III peroxidases are found in the extracellular space or in the vacuole in plants where they have been implicated in hydrogen peroxide detoxification, auxin catabolism and lignin biosynthesis, and stress response. Class III peroxidases contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=1.8e-75 Score=523.06 Aligned_cols=227 Identities=43% Similarity=0.750 Sum_probs=215.9
Q ss_pred CCCCCCcchHHHHHHHHHHHHhhCCCcccHHHHHHHHhhhhHhhcCCCccccCCCCCCCCCchhhhhhccCCCCCCCHHH
Q 026488 1 MDRSFGMRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSV 80 (238)
Q Consensus 1 ~~~N~~l~g~~~i~~iK~~le~~c~~~VScADiialAa~~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~ 80 (238)
+++|.||+||++|+.||+++|+.||++|||||||+||||+||+++|||.|+|++||+|+.++...++ +.||.|..++++
T Consensus 67 ~~~N~~l~g~~~i~~iK~~~e~~cp~~VScADiialAar~av~~~GGP~~~v~~GR~D~~~s~~~~~-~~lP~p~~~~~~ 145 (298)
T cd00693 67 APPNLSLRGFDVIDDIKAALEAACPGVVSCADILALAARDAVVLAGGPSYEVPLGRRDGRVSSANDV-GNLPSPFFSVSQ 145 (298)
T ss_pred CCCCCCcchhHHHHHHHHHHHhhCCCcccHHHHHHHhhhhceeccCCCcccccCCCcCCcccCcccc-cCCCCcccCHHH
Confidence 4789999999999999999999999999999999999999999999999999999999998876655 789999999999
Q ss_pred HHHHHHhcCCCCCCceeeeccccccccccccccccccC-----CCCCCCCcchhhHhhhcCCCCCCCCCCCccccCCCCC
Q 026488 81 VLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYP-----EVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGT 155 (238)
Q Consensus 81 l~~~F~~~Gl~~~elVaL~GaHtiG~~~~~~f~~rl~~-----~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~~~~D~~t 155 (238)
+++.|+++||+++|||+|+||||||++||.+|.+|+|+ .+||+||+.|+..|++.||.. .+....+++|+.|
T Consensus 146 l~~~F~~~G~~~~d~VaL~GaHTiG~~hc~~f~~Rl~~f~g~~~~dp~~~~~~~~~L~~~Cp~~---~~~~~~~~lD~~T 222 (298)
T cd00693 146 LISLFASKGLTVTDLVALSGAHTIGRAHCSSFSDRLYNFSGTGDPDPTLDPAYAAQLRKKCPAG---GDDDTLVPLDPGT 222 (298)
T ss_pred HHHHHHHcCCCHHHheeecccceeeeeecccccccccCCCCCCCCCCCccHHHHHHhcCCCCCC---CCCCccccCCCCC
Confidence 99999999999999999999999999999999999986 489999999999999999973 2345668899999
Q ss_pred CCccChHHHHHhhcccccchhhhhhhcCcCcHHHHHHHhhcHHHHHHHHHHHHHHHhhCCCCCCCCCccccccccc
Q 026488 156 PMVLDNNYYRNILDNKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGEIRKVCNLA 231 (238)
Q Consensus 156 p~~fDn~Yy~~l~~~~gll~SD~~L~~d~~t~~~v~~yA~~~~~F~~~Fa~Am~Km~~l~v~tG~~GeiR~~C~~~ 231 (238)
|.+|||+||++++.++|+|+||++|+.|++|+++|++||.||++|+++|+.||+||++++|+||.+||||++|+.|
T Consensus 223 p~~FDn~Yy~~l~~~~glL~SD~~L~~d~~t~~~V~~~A~d~~~F~~~Fa~Am~Kl~~l~v~tg~~GeiR~~C~~~ 298 (298)
T cd00693 223 PNTFDNSYYKNLLAGRGLLTSDQALLSDPRTRAIVNRYAANQDAFFRDFAAAMVKMGNIGVLTGSQGEIRKNCRVV 298 (298)
T ss_pred CCccccHHHHHHHhcccCccCCHHhccCccHHHHHHHHhhCHHHHHHHHHHHHHHHhhcCCccCCCCccCCccccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999975
No 3
>PLN02608 L-ascorbate peroxidase
Probab=100.00 E-value=9.3e-57 Score=398.49 Aligned_cols=187 Identities=28% Similarity=0.442 Sum_probs=170.4
Q ss_pred CCCCCCc-chHHHHHHHHHHHHhhCCCcccHHHHHHHHhhhhHhhcCCCccccCCCCCCCCCchhhhhhccCCCCCCCHH
Q 026488 1 MDRSFGM-RNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMS 79 (238)
Q Consensus 1 ~~~N~~l-~g~~~i~~iK~~le~~c~~~VScADiialAa~~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~ 79 (238)
+++|.|| +||++|+.||+++ ++|||||||+||||+||+++|||.|+|++||+|++++.+ +++||.|+.+++
T Consensus 66 ~~~N~gL~~g~~vid~iK~~~-----~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~---~~~LP~p~~~~~ 137 (289)
T PLN02608 66 HGANNGLKIAIDLCEPVKAKH-----PKITYADLYQLAGVVAVEVTGGPTIDFVPGRKDSNACPE---EGRLPDAKKGAK 137 (289)
T ss_pred CccccchHHHHHHHHHHHHHc-----CCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCcCCc---cCCCcCCCCCHH
Confidence 4789999 6999999999987 479999999999999999999999999999999998863 568999999999
Q ss_pred HHHHHHHhcCCCCCCceeeeccccccccccccccccccCCCCCCCCcchhhHhhhcCCCCCCCCCCCccccCCCCCCCcc
Q 026488 80 VVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVL 159 (238)
Q Consensus 80 ~l~~~F~~~Gl~~~elVaL~GaHtiG~~~~~~f~~rl~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~~~~D~~tp~~f 159 (238)
++++.|+++||+++|||+|+||||||++||. |+ + ..+. ++ .||.+|
T Consensus 138 ~l~~~F~~~Gl~~~D~VaLsGAHTiG~ahc~----r~-g-----------------------~~g~-----~~-~Tp~~F 183 (289)
T PLN02608 138 HLRDVFYRMGLSDKDIVALSGGHTLGRAHPE----RS-G-----------------------FDGP-----WT-KEPLKF 183 (289)
T ss_pred HHHHHHHHcCCCHHHHhhhcccccccccccc----CC-C-----------------------CCCC-----CC-CCCCcc
Confidence 9999999999999999999999999999995 43 0 0011 12 599999
Q ss_pred ChHHHHHhhcc--ccc--chhhhhhhcCcCcHHHHHHHhhcHHHHHHHHHHHHHHHhhCCCCCCCCCccccccc
Q 026488 160 DNNYYRNILDN--KGL--MMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGEIRKVCN 229 (238)
Q Consensus 160 Dn~Yy~~l~~~--~gl--l~SD~~L~~d~~t~~~v~~yA~~~~~F~~~Fa~Am~Km~~l~v~tG~~GeiR~~C~ 229 (238)
||+||++++.+ +|+ |+||++|+.|++|+++|+.||.||++|+++|++||+||++|+|+||.+||+.+.-+
T Consensus 184 DN~Yy~~ll~~~~~gll~L~SD~~L~~d~~T~~~V~~fA~~~~~F~~~Fa~Am~Km~~lgvltg~~Ge~~~~~~ 257 (289)
T PLN02608 184 DNSYFVELLKGESEGLLKLPTDKALLEDPEFRPYVELYAKDEDAFFRDYAESHKKLSELGFTPPSSAFKKKSTS 257 (289)
T ss_pred ChHHHHHHHcCCcCCccccccCHhhhcChhHHHHHHHHhhCHHHHHHHHHHHHHHHHcCCCCCCCCCcccccCc
Confidence 99999999998 788 79999999999999999999999999999999999999999999999999988654
No 4
>PF00141 peroxidase: Peroxidase; InterPro: IPR002016 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Most haem peroxidases follow the reaction scheme: Fe3+ + H2O2 --> [Fe4+=O]R' (Compound I) + H2O [Fe4+=O]R' + substrate --> [Fe4+=O]R (Compound II) + oxidised substrate [Fe4+=O]R + substrate --> Fe3+ + H2O + oxidised substrate In this mechanism, the enzyme reacts with one equivalent of H2O2 to give [Fe4+=O]R' (compound I). This is a two-electron oxidation/reduction reaction where H2O2 is reduced to water and the enzyme is oxidised. One oxidising equivalent resides on iron, giving the oxyferryl [] intermediate, while in many peroxidases the porphyrin (R) is oxidised to the porphyrin pi-cation radical (R'). Compound I then oxidises an organic substrate to give a substrate radical []. Haem peroxidases include two superfamilies: one found in bacteria, fungi, plants and the second found in animals. The first one can be viewed as consisting of 3 major classes []. Class I, the intracellular peroxidases, includes: yeast cytochrome c peroxidase (CCP), a soluble protein found in the mitochondrial electron transport chain, where it probably protects against toxic peroxides; ascorbate peroxidase (AP), the main enzyme responsible for hydrogen peroxide removal in chloroplasts and cytosol of higher plants; and bacterial catalase- peroxidases, exhibiting both peroxidase and catalase activities. It is thought that catalase-peroxidase provides protection to cells under oxidative stress []. Class II consists of secretory fungal peroxidases: ligninases, or lignin peroxidases (LiPs), and manganese-dependent peroxidases (MnPs). These are monomeric glycoproteins involved in the degradation of lignin. In MnP, Mn2+ serves as the reducing substrate []. Class II proteins contain four conserved disulphide bridges and two conserved calcium-binding sites. Class III consists of the secretory plant peroxidases, which have multiple tissue-specific functions: e.g., removal of hydrogen peroxide from chloroplasts and cytosol; oxidation of toxic compounds; biosynthesis of the cell wall; defence responses towards wounding; indole-3-acetic acid (IAA) catabolism; ethylene biosynthesis; and so on. Class III proteins are also monomeric glycoproteins, containing four conserved disulphide bridges and two calcium ions, although the placement of the disulphides differs from class II enzymes. The crystal structures of a number of these proteins show that they share the same architecture - two all-alpha domains between which the haem group is embedded. ; GO: 0004601 peroxidase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 1QPA_B 2DV2_A 2B2R_B 1MWV_B 2FXJ_A 2FXG_A 2B2O_B 1X7U_B 2B2Q_A 2FXH_A ....
Probab=100.00 E-value=2.5e-57 Score=393.39 Aligned_cols=184 Identities=42% Similarity=0.733 Sum_probs=167.5
Q ss_pred CCCCCCcc-hHHHHHHHHHHHHhhCCCcccHHHHHHHHhhhhHhhcCCCccccCCCCCCCCCchhhhhhccCCCCCCCHH
Q 026488 1 MDRSFGMR-NFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMS 79 (238)
Q Consensus 1 ~~~N~~l~-g~~~i~~iK~~le~~c~~~VScADiialAa~~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~ 79 (238)
+++|.||+ |+++|+.||+++|++||++|||||||+|||++||+.+|||.|+|++||+|++++...++ .+||.|..+++
T Consensus 46 ~~~N~gl~~~~~~i~~ik~~~~~~cp~~VS~ADiialAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~-~~lP~p~~~~~ 124 (230)
T PF00141_consen 46 APPNRGLRDGFDVIDPIKAKLEAACPGVVSCADIIALAARDAVELCGGPRIPVPLGRRDGTVSSPSGA-SNLPSPTDSVD 124 (230)
T ss_dssp SGGGTTHHHHHHHHHHHHHHHCHHSTTTS-HHHHHHHHHHHHHHHTTGGHSHBEB-EBB-SSGGHHHH-HHSSTTTSHHH
T ss_pred cccccCcceeeechhhHHhhhcccccCCCCHHHHHHHHhhhccccccccccccccccccccccccccc-ccccccccccc
Confidence 46899997 99999999999999999999999999999999999999999999999999999999777 78999999999
Q ss_pred HHHHHHHhcCCCCCCceeeeccccccccccccccccccCCCCCCCCcchhhHhhhcCCCCCCCCCCCccccCCCCCCCcc
Q 026488 80 VVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVL 159 (238)
Q Consensus 80 ~l~~~F~~~Gl~~~elVaL~GaHtiG~~~~~~f~~rl~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~~~~D~~tp~~f 159 (238)
++++.|+++||+++|||||+||||||++||.+|. |+|..+||+||+.|+.+ .|+. ++++ .+++| ||.+|
T Consensus 125 ~l~~~F~~~Gls~~e~VaLsGaHTiG~~~c~~f~-rl~~~~dp~~d~~~~~~---~C~~----~~~~-~~~~d--tp~~f 193 (230)
T PF00141_consen 125 QLLAFFARKGLSAEEMVALSGAHTIGRAHCSSFS-RLYFPPDPTMDPGYAGQ---NCNS----GGDN-GVPLD--TPTVF 193 (230)
T ss_dssp HHHHHHHHTT--HHHHHHHHGGGGSTEESGGCTG-GTSCSSGTTSTHHHHHH---SSST----SGCT-CEESS--STTS-
T ss_pred hhhhhhhccccchhhhcceecccccccceecccc-cccccccccccccccee---ccCC----Cccc-ccccc--CCCcc
Confidence 9999999999999999999999999999999999 99988999999999988 8933 2222 67888 99999
Q ss_pred ChHHHHHhhcccccchhhhhhhcCcCcHHHHHHHhhc
Q 026488 160 DNNYYRNILDNKGLMMVDHQLATDKRTRPYVKKMAKS 196 (238)
Q Consensus 160 Dn~Yy~~l~~~~gll~SD~~L~~d~~t~~~v~~yA~~ 196 (238)
||+||+++++++|+|+||++|+.|++|+++|++||+|
T Consensus 194 DN~Yy~~ll~~~gll~SD~~L~~d~~t~~~V~~yA~d 230 (230)
T PF00141_consen 194 DNSYYKNLLNGRGLLPSDQALLNDPETRPIVERYAQD 230 (230)
T ss_dssp SSHHHHHHHHTEEEEHHHHHHHHSTTHHHHHHHHHHT
T ss_pred hhHHHHHHhcCCCcCHHHHHHhcCHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999976
No 5
>cd00691 ascorbate_peroxidase Ascorbate peroxidases and cytochrome C peroxidases. Ascorbate peroxidases are a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Along with related catalase-peroxidases, ascorbate peroxidases belong to class I of the plant superfamily. Ascorbate peroxidases are found in the chloroplasts and/or cytosol of algae and plants, where they have been shown to control the concentration of lethal hydrogen peroxide molecules. The yeast cytochrome c peroxidase is a divergent member of the family; it forms a complex with cytochrome c to catalyze the reduction of hydrogen peroxide to water.
Probab=100.00 E-value=1.9e-54 Score=379.47 Aligned_cols=178 Identities=31% Similarity=0.506 Sum_probs=163.7
Q ss_pred CCCCCCc-chHHHHHHHHHHHHhhCCCcccHHHHHHHHhhhhHhhcCCCccccCCCCCCCCCchhhhhhccCCCCCCCHH
Q 026488 1 MDRSFGM-RNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMS 79 (238)
Q Consensus 1 ~~~N~~l-~g~~~i~~iK~~le~~c~~~VScADiialAa~~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~ 79 (238)
+++|.|| +||++|++||+++ | +|||||||+||||+||+++|||.|+|++||+|+.++....++.+||.|+.+++
T Consensus 65 ~~~N~~L~~~~~~i~~iK~~~----~-~VScADilalAar~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~ 139 (253)
T cd00691 65 HGANAGLDIARKLLEPIKKKY----P-DISYADLWQLAGVVAIEEMGGPKIPFRPGRVDASDPEECPPEGRLPDASKGAD 139 (253)
T ss_pred CccccchHHHHHHHHHHHHHc----C-CCCHHHHHHHHHHHHHHHcCCCccCcccCCCCCCcccccCcccCCCCCCCCHH
Confidence 4789999 9999999999987 4 79999999999999999999999999999999999987667788999999999
Q ss_pred HHHHHHHhcCCCCCCceeeeccccccccccccccccccCCCCCCCCcchhhHhhhcCCCCCCCCCCCccccCCCCCCCcc
Q 026488 80 VVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVL 159 (238)
Q Consensus 80 ~l~~~F~~~Gl~~~elVaL~GaHtiG~~~~~~f~~rl~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~~~~D~~tp~~f 159 (238)
++++.|+++||+++|||+|+||||||++||..+ + ..+.+ ..||.+|
T Consensus 140 ~l~~~F~~~Gls~~d~VaLsGaHTiG~a~c~~~-----~-----------------------~~g~~------~~tp~~F 185 (253)
T cd00691 140 HLRDVFYRMGFNDQEIVALSGAHTLGRCHKERS-----G-----------------------YDGPW------TKNPLKF 185 (253)
T ss_pred HHHHHHHhcCCCHHHHHHhcccceeecccccCC-----C-----------------------CCCCC------CCCCCcc
Confidence 999999999999999999999999999999531 1 01111 2599999
Q ss_pred ChHHHHHhhcccc--------cchhhhhhhcCcCcHHHHHHHhhcHHHHHHHHHHHHHHHhhCCCC
Q 026488 160 DNNYYRNILDNKG--------LMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPL 217 (238)
Q Consensus 160 Dn~Yy~~l~~~~g--------ll~SD~~L~~d~~t~~~v~~yA~~~~~F~~~Fa~Am~Km~~l~v~ 217 (238)
||+||++++.++| +|+||++|+.|++|+++|++||.|+++|+++|++||+||++++|.
T Consensus 186 Dn~Yy~~ll~~~g~~~~~~~~~L~sD~~L~~d~~t~~~v~~~a~~~~~F~~~Fa~Am~Km~~l~v~ 251 (253)
T cd00691 186 DNSYFKELLEEDWKLPTPGLLMLPTDKALLEDPKFRPYVELYAKDQDAFFKDYAEAHKKLSELGVP 251 (253)
T ss_pred cHHHHHHHhcCCCccCcCcceechhhHHHHcCccHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999999999 999999999999999999999999999999999999999999985
No 6
>PLN02879 L-ascorbate peroxidase
Probab=100.00 E-value=6.7e-54 Score=374.39 Aligned_cols=175 Identities=33% Similarity=0.526 Sum_probs=159.4
Q ss_pred CCCCCCcc-hHHHHHHHHHHHHhhCCCcccHHHHHHHHhhhhHhhcCCCccccCCCCCCCCCchhhhhhccCCCCCCCHH
Q 026488 1 MDRSFGMR-NFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMS 79 (238)
Q Consensus 1 ~~~N~~l~-g~~~i~~iK~~le~~c~~~VScADiialAa~~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~ 79 (238)
+++|.||+ ++++|+.||+++ ++|||||||+|||++||+++|||.|+|++||+|+.++.+ +++||.|+.+++
T Consensus 69 ~~~N~gL~~~~~~i~~iK~~~-----~~VScADilalAa~~AV~~~GGP~~~~~~GR~D~~~~~~---~~~lP~p~~~~~ 140 (251)
T PLN02879 69 HDANNGLDIAVRLLDPIKELF-----PILSYADFYQLAGVVAVEITGGPEIPFHPGRLDKVEPPP---EGRLPQATKGVD 140 (251)
T ss_pred CCCcCChHHHHHHHHHHHHHc-----CCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCCCCc---ccCCCCCCCCHH
Confidence 47899996 999999999998 479999999999999999999999999999999998754 568999999999
Q ss_pred HHHHHHHhcCCCCCCceeeeccccccccccccccccccCCCCCCCCcchhhHhhhcCCCCCCCCCCCccccCCCCCCCcc
Q 026488 80 VVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVL 159 (238)
Q Consensus 80 ~l~~~F~~~Gl~~~elVaL~GaHtiG~~~~~~f~~rl~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~~~~D~~tp~~f 159 (238)
+|++.|++|||+++|||||+||||||++||. |. + ..+. +| .||.+|
T Consensus 141 ~l~~~F~~~Gl~~~dlVALsGaHTiG~ah~~----r~-g-----------------------~~g~-----~d-~tp~~F 186 (251)
T PLN02879 141 HLRDVFGRMGLNDKDIVALSGGHTLGRCHKE----RS-G-----------------------FEGA-----WT-PNPLIF 186 (251)
T ss_pred HHHHHHHHcCCCHHHHeeeeccccccccccc----cc-c-----------------------CCCC-----CC-CCccce
Confidence 9999999999999999999999999999995 21 0 1111 34 599999
Q ss_pred ChHHHHHhhcc--ccc--chhhhhhhcCcCcHHHHHHHhhcHHHHHHHHHHHHHHHhhCCCC
Q 026488 160 DNNYYRNILDN--KGL--MMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPL 217 (238)
Q Consensus 160 Dn~Yy~~l~~~--~gl--l~SD~~L~~d~~t~~~v~~yA~~~~~F~~~Fa~Am~Km~~l~v~ 217 (238)
||+||++++.+ +|+ |+||++|+.|++|+++|++||.||++|+++|++||+||++|++-
T Consensus 187 DN~Yy~~ll~~~~~gll~L~SD~aL~~D~~t~~~V~~~A~d~~~F~~~Fa~Am~KL~~lg~~ 248 (251)
T PLN02879 187 DNSYFKEILSGEKEGLLQLPTDKALLDDPLFLPFVEKYAADEDAFFEDYTEAHLKLSELGFA 248 (251)
T ss_pred eHHHHHHHHcCCcCCCccchhhHHHhcCCcHHHHHHHHhhCHHHHHHHHHHHHHHHHccCCC
Confidence 99999999998 888 67999999999999999999999999999999999999999874
No 7
>PLN02364 L-ascorbate peroxidase 1
Probab=100.00 E-value=3.6e-53 Score=370.32 Aligned_cols=174 Identities=33% Similarity=0.526 Sum_probs=157.9
Q ss_pred CCCCCCc-chHHHHHHHHHHHHhhCCCcccHHHHHHHHhhhhHhhcCCCccccCCCCCCCCCchhhhhhccCCCCCCCHH
Q 026488 1 MDRSFGM-RNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMS 79 (238)
Q Consensus 1 ~~~N~~l-~g~~~i~~iK~~le~~c~~~VScADiialAa~~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~ 79 (238)
+++|.|| +||++|+.||+++ ++|||||||+||||+||+++|||.|+|++||+|++++.+ +++||.|..+++
T Consensus 68 ~~~N~gl~~~~~~i~~ik~~~-----~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~---~~~lP~p~~~~~ 139 (250)
T PLN02364 68 HGANSGIHIALRLLDPIREQF-----PTISFADFHQLAGVVAVEVTGGPDIPFHPGREDKPQPPP---EGRLPDATKGCD 139 (250)
T ss_pred CCCccCHHHHHHHHHHHHHHc-----CCcCHHHHHHHHHHHHHHhcCCCeeCCCCCCCCcccccc---cCCCCCCCcCHH
Confidence 4789999 8999999999998 579999999999999999999999999999999998864 567999999999
Q ss_pred HHHHHHHh-cCCCCCCceeeeccccccccccccccccccCCCCCCCCcchhhHhhhcCCCCCCCCCCCccccCCCCCCCc
Q 026488 80 VVLERFAA-IGIDAPGLVALLGSHSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMV 158 (238)
Q Consensus 80 ~l~~~F~~-~Gl~~~elVaL~GaHtiG~~~~~~f~~rl~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~~~~D~~tp~~ 158 (238)
+|++.|++ +||+++|||+|+||||||++||. |+. ..+. ++ .||.+
T Consensus 140 ~l~~~F~~~~Gl~~~d~VaLsGaHTiG~~hc~----r~~------------------------~~g~-----~~-~tp~~ 185 (250)
T PLN02364 140 HLRDVFAKQMGLSDKDIVALSGAHTLGRCHKD----RSG------------------------FEGA-----WT-SNPLI 185 (250)
T ss_pred HHHHHHHHhcCCCHHHheeeecceeeccccCC----CCC------------------------CCCC-----CC-CCCCc
Confidence 99999996 69999999999999999999993 320 0111 22 58999
Q ss_pred cChHHHHHhhcc--cccch--hhhhhhcCcCcHHHHHHHhhcHHHHHHHHHHHHHHHhhCCC
Q 026488 159 LDNNYYRNILDN--KGLMM--VDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNP 216 (238)
Q Consensus 159 fDn~Yy~~l~~~--~gll~--SD~~L~~d~~t~~~v~~yA~~~~~F~~~Fa~Am~Km~~l~v 216 (238)
|||+||++++.+ +|+|. ||+.|+.|++|+.+|+.||.||+.|+++|++||+||++|++
T Consensus 186 fDn~Yy~~ll~~~~~gll~l~sD~~L~~d~~T~~~v~~~a~~~~~F~~~Fa~Am~Km~~lg~ 247 (250)
T PLN02364 186 FDNSYFKELLSGEKEGLLQLVSDKALLDDPVFRPLVEKYAADEDAFFADYAEAHMKLSELGF 247 (250)
T ss_pred cchHHHHHHhcCCcCCCccccchHHHccCchHHHHHHHHhhCHHHHHHHHHHHHHHHHccCC
Confidence 999999999998 89875 99999999999999999999999999999999999999987
No 8
>cd00692 ligninase Ligninase and other manganese-dependent fungal peroxidases. Ligninases and related extracellular fungal peroxidases belong to class II of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class II peroxidases are fungal glycoproteins that have been implicated in the oxidative breakdown of lignin, the main cell wall component of woody plants. They contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=2.8e-52 Score=375.90 Aligned_cols=188 Identities=27% Similarity=0.389 Sum_probs=169.8
Q ss_pred CCCCCCcchHHHHHHHHHHHHhhCCCcccHHHHHHHHhhhhHhh-cCCCccccCCCCCCCCCchhhhhhccCCCCCCCHH
Q 026488 1 MDRSFGMRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVA-LGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMS 79 (238)
Q Consensus 1 ~~~N~~l~g~~~i~~iK~~le~~c~~~VScADiialAa~~Av~~-~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~ 79 (238)
+++|.||+ ++|+.||..+|+.| |||||||+||||+||+. .|||.|+|++||+|++++.+ ++.||.|+.+++
T Consensus 80 ~~~N~gL~--~vvd~lk~~~e~~c---VScADiialAa~~AV~~~~GGP~i~v~~GR~D~~~s~~---~g~LP~p~~sv~ 151 (328)
T cd00692 80 FHANIGLD--EIVEALRPFHQKHN---VSMADFIQFAGAVAVSNCPGAPRLEFYAGRKDATQPAP---DGLVPEPFDSVD 151 (328)
T ss_pred CCCCCCHH--HHHHHHHHHHHhcC---cCHHHHHHHHHHHHHHhcCCCCcccccCCCCCCCCCCc---ccCCCCCCCCHH
Confidence 46799998 99999999999998 99999999999999995 69999999999999998864 467999999999
Q ss_pred HHHHHHHhcCCCCCCceeeeccccccccccccccccccCCCCCCCCcchhhHhhhcCCCCCCCCCCCccccCCCCCCCcc
Q 026488 80 VVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVL 159 (238)
Q Consensus 80 ~l~~~F~~~Gl~~~elVaL~GaHtiG~~~~~~f~~rl~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~~~~D~~tp~~f 159 (238)
+|++.|+++||+.+|||+|+||||||++|. +||+++. .++| .||.+|
T Consensus 152 ~l~~~F~~~Gf~~~E~VaLsGAHTiG~a~~----------~Dps~~g----------------------~p~D-~TP~~F 198 (328)
T cd00692 152 KILARFADAGFSPDELVALLAAHSVAAQDF----------VDPSIAG----------------------TPFD-STPGVF 198 (328)
T ss_pred HHHHHHHHcCCCHHHHhhhcccccccccCC----------CCCCCCC----------------------CCCC-CCcchh
Confidence 999999999999999999999999999983 3666541 3577 599999
Q ss_pred ChHHHHHhh-cccc-------------------cchhhhhhhcCcCcHHHHHHHhhcHHHHHHHHHHHHHHHhhCCCCCC
Q 026488 160 DNNYYRNIL-DNKG-------------------LMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTG 219 (238)
Q Consensus 160 Dn~Yy~~l~-~~~g-------------------ll~SD~~L~~d~~t~~~v~~yA~~~~~F~~~Fa~Am~Km~~l~v~tG 219 (238)
||+||++++ .+.+ +|+||++|+.|++|+.+|++||.||++|+++|++||+||++|||.
T Consensus 199 Dn~Yf~~ll~~~~~~~g~~~~~~e~~~~~~g~~~L~SD~~L~~D~~T~~~v~~fa~dq~~f~~~Fa~Am~KLs~lgv~-- 276 (328)
T cd00692 199 DTQFFIETLLKGTAFPGSGGNQGEVESPLPGEFRLQSDFLLARDPRTACEWQSFVNNQAKMNAAFAAAMLKLSLLGQD-- 276 (328)
T ss_pred cHHHHHHHHHcCCCCCCccccccccccCccccccccchHHHhcCCcHHHHHHHHhcCHHHHHHHHHHHHHHHHcCCCC--
Confidence 999999987 4555 499999999999999999999999999999999999999999875
Q ss_pred CCCccccccccccC
Q 026488 220 TKGEIRKVCNLANK 233 (238)
Q Consensus 220 ~~GeiR~~C~~~n~ 233 (238)
+..+.+|+.|+.
T Consensus 277 --~~~l~dcs~v~p 288 (328)
T cd00692 277 --NISLTDCSDVIP 288 (328)
T ss_pred --cchhccCcccCC
Confidence 458889999984
No 9
>cd00649 catalase_peroxidase_1 N-terminal catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms, where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to class I of the plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C
Probab=100.00 E-value=2.9e-51 Score=375.05 Aligned_cols=214 Identities=21% Similarity=0.281 Sum_probs=188.0
Q ss_pred CCCCCc-chHHHHHHHHHHHHhhCCCcccHHHHHHHHhhhhHhhcCCCccccCCCCCCCCCchhh---------------
Q 026488 2 DRSFGM-RNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAE--------------- 65 (238)
Q Consensus 2 ~~N~~l-~g~~~i~~iK~~le~~c~~~VScADiialAa~~Av~~~GGP~~~v~~GR~D~~~s~~~--------------- 65 (238)
+.|.|| +++.+++.||+++ +..||+||+|+||+.+|||.+|||.+++..||.|.......
T Consensus 107 ~~N~gL~~a~~~L~pik~k~----~~~iS~ADL~~LaG~~AiE~~Ggp~ipf~~GR~Da~~~~~~v~wg~~~~~~~~~~~ 182 (409)
T cd00649 107 PDNVNLDKARRLLWPIKQKY----GNKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGPEKEWLADKRY 182 (409)
T ss_pred HhhhhHHHHHHHHHHHHHHc----CCCccHHHHHHHHHHHHHHHcCCCcccccCCCCccCCCccccccCcchhccccccc
Confidence 468899 7899999999988 55699999999999999999999999999999999754320
Q ss_pred ----------------------hhhccCCCCCCCHHHHHHHHHhcCCCCCCceee-eccccccccccccccccccCCCCC
Q 026488 66 ----------------------ILEQYLPDHNDSMSVVLERFAAIGIDAPGLVAL-LGSHSVGRTHCVKLVHRLYPEVDP 122 (238)
Q Consensus 66 ----------------------~~~~~lP~p~~~~~~l~~~F~~~Gl~~~elVaL-~GaHtiG~~~~~~f~~rl~~~~dp 122 (238)
+....||+|..++.+|++.|.+|||+++||||| +||||||++||..|..|+. +||
T Consensus 183 ~~~~~l~~pl~a~~mgliyv~Pegp~gLPdP~~sa~~LR~~F~RmGlnd~E~VAL~sGAHTiGkaHc~~~~~rlg--~dP 260 (409)
T cd00649 183 SGDRDLENPLAAVQMGLIYVNPEGPDGNPDPLAAAKDIRETFARMAMNDEETVALIAGGHTFGKTHGAGPASHVG--PEP 260 (409)
T ss_pred ccchhhccchhhhhccccccCCCCCCCCCCCccCHHHHHHHHHHcCCCHHHHeeeccCCcceeecCcccccccCC--CCC
Confidence 112269999999999999999999999999999 5999999999999999984 799
Q ss_pred CCCcchhhHhh--hcCCCCCCCCCCCccccCC---CCCCCccChHHHHHhhc----------------------------
Q 026488 123 ALNPDHVPHML--HKCPDAIPDPKAVQYVRND---RGTPMVLDNNYYRNILD---------------------------- 169 (238)
Q Consensus 123 ~~d~~~~~~L~--~~Cp~~~~~~~~~~~~~~D---~~tp~~fDn~Yy~~l~~---------------------------- 169 (238)
.+++.|+..|. ..||.. .+++.....+| +.||.+|||+||++|+.
T Consensus 261 ~~~~~~~~gLgw~~~Cp~g--~g~~t~~sglDG~Wt~tP~~FDN~YF~nLl~~eW~~~~~p~g~~Q~~~~~~~~~~~~~d 338 (409)
T cd00649 261 EAAPIEQQGLGWKNSYGTG--KGKDTITSGLEGAWTPTPTKWDNNYLKNLFGYEWELTKSPAGAWQWVPKNAAGENTVPD 338 (409)
T ss_pred CcCHHHHHhhcccccCCCC--CCCCCccccCCCCCCCCcchhhHHHHHHHHhccceeccCCCCcccccccCccccccCCC
Confidence 99999999996 789962 22223345688 57999999999999998
Q ss_pred --------ccccchhhhhhhcCcCcHHHHHHHhhcHHHHHHHHHHHHHHH--hhCCCCCCCCCc
Q 026488 170 --------NKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLL--SENNPLTGTKGE 223 (238)
Q Consensus 170 --------~~gll~SD~~L~~d~~t~~~v~~yA~~~~~F~~~Fa~Am~Km--~~l~v~tG~~Ge 223 (238)
+++||+||++|+.|++++++|++||.||++||++|++||+|| ..+|+++-..|.
T Consensus 339 ~~~~~~~~~~gmL~SD~aL~~Dp~tr~iV~~yA~d~~~Ff~dFA~A~~KL~hrdmgp~~~~~g~ 402 (409)
T cd00649 339 AHDPSKKHAPMMLTTDLALRFDPEYEKISRRFLENPDEFADAFAKAWFKLTHRDMGPKSRYLGP 402 (409)
T ss_pred ccccccccCcccchhhHhhhcCccHHHHHHHHhcCHHHHHHHHHHHHHHHccccCCchhhhcCC
Confidence 568999999999999999999999999999999999999999 589998876663
No 10
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=2.9e-49 Score=382.32 Aligned_cols=215 Identities=21% Similarity=0.273 Sum_probs=184.9
Q ss_pred CCCCCc-chHHHHHHHHHHHHhhCCCcccHHHHHHHHhhhhHhhcCCCccccCCCCCCCCCchhh---------------
Q 026488 2 DRSFGM-RNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAE--------------- 65 (238)
Q Consensus 2 ~~N~~l-~g~~~i~~iK~~le~~c~~~VScADiialAa~~Av~~~GGP~~~v~~GR~D~~~s~~~--------------- 65 (238)
+.|.+| +++.+++.||++ ||++|||||||+||+++|||.+|||.|+|.+||+|+..+...
T Consensus 117 ~~N~~Ldka~~lL~pIk~k----yp~~VS~ADLivLAG~vAVE~~Ggp~i~f~~GR~D~~~~~~d~~~g~e~~~l~~~~~ 192 (716)
T TIGR00198 117 PDNVNLDKARRLLWPIKKK----YGNKLSWADLIILAGTVAYESMGLKVFGFAGGREDIWEPDKDIYWGAEKEWLTSSRE 192 (716)
T ss_pred hhhhhHHHHHHHHHHHHHH----CCCceeHHHHHHHHHHHHHHHhCCCccCCCCCCCCCCCcccccccccccchhhcccc
Confidence 458888 789999999885 698999999999999999999999999999999999432100
Q ss_pred ---------------------hhhccCCCCCCCHHHHHHHHHhcCCCCCCceeee-ccccccccccccccccccCCCCCC
Q 026488 66 ---------------------ILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALL-GSHSVGRTHCVKLVHRLYPEVDPA 123 (238)
Q Consensus 66 ---------------------~~~~~lP~p~~~~~~l~~~F~~~Gl~~~elVaL~-GaHtiG~~~~~~f~~rl~~~~dp~ 123 (238)
+....+|+|..++.+|++.|.+||||++|||||+ ||||||++||.+|..|+ ++||+
T Consensus 193 ~~~~l~~p~a~~~~Gliyvnpeg~~~lPdP~~sa~~Lrd~F~rmGLnd~EmVALiaGaHTiGkaHc~s~~~rl--g~dP~ 270 (716)
T TIGR00198 193 DRESLENPLAATEMGLIYVNPEGPDGHPDPLCTAQDIRTTFARMGMNDEETVALIAGGHTVGKCHGAGPAELI--GPDPE 270 (716)
T ss_pred ccccccccchhhhccccccCcccccCCCCCCCCHHHHHHHHHHcCCChHHHeeeecCceeccccCCCcccccC--CCCCC
Confidence 1122699999999999999999999999999996 99999999999999998 48999
Q ss_pred CCcchhhHhhhcCCCCCCCCCCCccccCC---CCCCCccChHHHHHhhcc------------------------------
Q 026488 124 LNPDHVPHMLHKCPDAIPDPKAVQYVRND---RGTPMVLDNNYYRNILDN------------------------------ 170 (238)
Q Consensus 124 ~d~~~~~~L~~~Cp~~~~~~~~~~~~~~D---~~tp~~fDn~Yy~~l~~~------------------------------ 170 (238)
+++.|++.|+..||...+.+.+.....+| +.||++|||+||++|+.+
T Consensus 271 ~~~~~~~gLg~~c~~~~g~g~dt~~sglDG~wT~TP~~FDN~YF~nLl~~~w~~~~s~~g~~q~~~~~~~~~~p~~~~~~ 350 (716)
T TIGR00198 271 GAPIEEQGLGWHNQYGKGVGRDTMTSGLEVAWTTTPTQWDNGYFYMLFNYEWELKKSPAGAWQWEAVDAPEIIPDVEDPN 350 (716)
T ss_pred cCHHHHHHhcccCCCCCCCCCCcccccCCCCCCCCCCccchHHHHHHhcCCceeeecCCCCceeeecccccccccccccc
Confidence 99999999999999643222333346677 679999999999999974
Q ss_pred ----cccchhhhhhhcCcCcHHHHHHHhhcHHHHHHHHHHHHHHHhh--CCCCCCCCC
Q 026488 171 ----KGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSE--NNPLTGTKG 222 (238)
Q Consensus 171 ----~gll~SD~~L~~d~~t~~~v~~yA~~~~~F~~~Fa~Am~Km~~--l~v~tG~~G 222 (238)
.++|.||++|..|++++++|+.||.|++.|+++|++||+||++ +|++.-..|
T Consensus 351 ~~~~~~mL~SDlaL~~Dp~~r~iVe~yA~d~~~F~~dFA~Aw~KL~~~d~gp~~~y~g 408 (716)
T TIGR00198 351 KKHNPIMLDADLALRFDPEFRKISRRFLREPDYFAEAFAKAWFKLTHRDMGPKSRYIG 408 (716)
T ss_pred cccccCccchhHHhccCccHHHHHHHHhcCHHHHHHHHHHHHHHHcccccCchhhhcC
Confidence 6899999999999999999999999999999999999999995 555443333
No 11
>cd00314 plant_peroxidase_like Heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX), which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions. Several sub-families can be identified. Class I includes intracellular peroxidases present in fungi, plants, archaea and bacteria, called catalase-peroxidases, that can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. Catalase-peroxidases are typically comprised of two homologous domains that probably arose via a single gene duplication event. Class II includes ligninase and other extracellular fungal peroxidases, while class III is comprised
Probab=100.00 E-value=3e-47 Score=334.80 Aligned_cols=179 Identities=32% Similarity=0.527 Sum_probs=161.8
Q ss_pred CCCCCCc-chHHHHHHHHHHHHhhCCCcccHHHHHHHHhhhhHhhc--CCCccccCCCCCCCCCch--hhhhhccCCCCC
Q 026488 1 MDRSFGM-RNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVAL--GGPYIPLKTGRRDGRKSR--AEILEQYLPDHN 75 (238)
Q Consensus 1 ~~~N~~l-~g~~~i~~iK~~le~~c~~~VScADiialAa~~Av~~~--GGP~~~v~~GR~D~~~s~--~~~~~~~lP~p~ 75 (238)
+++|.+| +++++|+.||++++. |++|||||||+||+++||+.+ |||.|+|++||+|++.+. ...+...+|.|.
T Consensus 54 ~~~N~~l~~~~~~l~~ik~~~~~--~~~vS~ADlialAa~~Av~~~~~ggp~~~~~~GR~D~~~~~~~~p~P~~~~p~~~ 131 (255)
T cd00314 54 RPENGGLDKALRALEPIKSAYDG--GNPVSRADLIALAGAVAVESTFGGGPLIPFRFGRLDATEPDLGVPDPEGLLPNET 131 (255)
T ss_pred CcccccHHHHHHHHHHHHHHcCC--CCcccHHHHHHHHHHHHHHHhccCCCeeeeCCCCCCCchhhccCCCCCCCCCCcc
Confidence 4789997 999999999999988 889999999999999999999 999999999999999664 122345678888
Q ss_pred CCHHHHHHHHHhcCCCCCCceeee-ccccc-cccccccccccccCCCCCCCCcchhhHhhhcCCCCCCCCCCCccccCCC
Q 026488 76 DSMSVVLERFAAIGIDAPGLVALL-GSHSV-GRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDR 153 (238)
Q Consensus 76 ~~~~~l~~~F~~~Gl~~~elVaL~-GaHti-G~~~~~~f~~rl~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~~~~D~ 153 (238)
.+++++++.|+++||+++|||||+ ||||| |++||..|..|+ | .+++
T Consensus 132 ~~~~~~~~~F~~~Gl~~~e~VAL~~GaHti~G~~~~~~~~~~~-------------------~-------------~~~~ 179 (255)
T cd00314 132 SSATELRDKFKRMGLSPSELVALSAGAHTLGGKNHGDLLNYEG-------------------S-------------GLWT 179 (255)
T ss_pred chHHHHHHHHHHcCCCHHHHHhhccCCeeccCcccCCCCCccc-------------------C-------------CCCC
Confidence 889999999999999999999999 99999 999999776552 2 1345
Q ss_pred CCCCccChHHHHHhhccc----------------ccchhhhhhhcCcCcHHHHHHHhhcHHHHHHHHHHHHHHHhh
Q 026488 154 GTPMVLDNNYYRNILDNK----------------GLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSE 213 (238)
Q Consensus 154 ~tp~~fDn~Yy~~l~~~~----------------gll~SD~~L~~d~~t~~~v~~yA~~~~~F~~~Fa~Am~Km~~ 213 (238)
.||.+|||+||++++.++ ++|+||+.|+.|++|+.+|++||.|+++|+++|++||+||++
T Consensus 180 ~tp~~fDN~yy~~l~~~~~~~~~~~~~~~~~~~~~~l~sD~~L~~d~~t~~~v~~ya~~~~~f~~~Fa~a~~Km~~ 255 (255)
T cd00314 180 STPFTFDNAYFKNLLDMNWEWRVGSPDPDGVKGPGLLPSDYALLSDSETRALVERYASDQEKFFEDFAKAWIKMVN 255 (255)
T ss_pred CCCCccchHHHHHHhcCCcccccCCccCCCcccCCCchhhHHHhcCHhHHHHHHHHHhCHHHHHHHHHHHHHHHcC
Confidence 799999999999999988 899999999999999999999999999999999999999975
No 12
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=1.6e-45 Score=354.69 Aligned_cols=213 Identities=20% Similarity=0.288 Sum_probs=184.0
Q ss_pred CCCCCc-chHHHHHHHHHHHHhhCCCcccHHHHHHHHhhhhHhhcCCCccccCCCCCCCCCchhh---------------
Q 026488 2 DRSFGM-RNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAE--------------- 65 (238)
Q Consensus 2 ~~N~~l-~g~~~i~~iK~~le~~c~~~VScADiialAa~~Av~~~GGP~~~v~~GR~D~~~s~~~--------------- 65 (238)
+.|.+| +++.+++.||+++ +..||+||+|+||+.+|||.+|||.+++..||.|.......
T Consensus 119 ~~N~gL~ka~~~L~pik~ky----~~~iS~ADLi~LaG~vAiE~~Ggp~i~f~~GR~D~~~~~~~v~wg~e~~~l~~~~r 194 (726)
T PRK15061 119 PDNVNLDKARRLLWPIKQKY----GNKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPEEDVYWGPEKEWLGGDER 194 (726)
T ss_pred hhhhhHHHHHHHHHHHHHHh----CCCccHHHHHHHHHHHHHHHcCCCccCcCCCCCCCcCCccccccCccccccccccc
Confidence 468899 8999999999998 55799999999999999999999999999999998654321
Q ss_pred -----------------------hhhccCCCCCCCHHHHHHHHHhcCCCCCCceeee-ccccccccccccccccccCCCC
Q 026488 66 -----------------------ILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALL-GSHSVGRTHCVKLVHRLYPEVD 121 (238)
Q Consensus 66 -----------------------~~~~~lP~p~~~~~~l~~~F~~~Gl~~~elVaL~-GaHtiG~~~~~~f~~rl~~~~d 121 (238)
+-...+|+|..++.+|++.|.+||||++|||||+ ||||||++||..|..|+ ++|
T Consensus 195 ~~~~~~l~~pl~a~~mgliyvnpegp~glPdP~~sa~~lR~tF~RMGmnDeEtVALiaGgHT~GkaHca~~~~rl--gpd 272 (726)
T PRK15061 195 YSGERDLENPLAAVQMGLIYVNPEGPNGNPDPLAAARDIRETFARMAMNDEETVALIAGGHTFGKTHGAGDASHV--GPE 272 (726)
T ss_pred cccccccccchhhhhccceecCCCCCCCCCCcccCHHHHHHHHHHcCCCHHHheeeccCCceeeeCCCcCccccc--CCC
Confidence 0012379999999999999999999999999995 99999999999999998 489
Q ss_pred CCCCcchhhHhh--hcCCCCCCCCCCCccccCC---CCCCCccChHHHHHhhcc--------------------------
Q 026488 122 PALNPDHVPHML--HKCPDAIPDPKAVQYVRND---RGTPMVLDNNYYRNILDN-------------------------- 170 (238)
Q Consensus 122 p~~d~~~~~~L~--~~Cp~~~~~~~~~~~~~~D---~~tp~~fDn~Yy~~l~~~-------------------------- 170 (238)
|.+++.+.+.|. ..||.. .+.+.....+| +.||++|||+||++|+.+
T Consensus 273 P~~a~~~~qgLgw~~~c~~g--~g~dt~tsGldG~Wt~tPt~fDN~YF~nLl~~~W~~~~sp~G~~qw~~~~~~~~~~~p 350 (726)
T PRK15061 273 PEAAPIEEQGLGWKNSYGSG--KGADTITSGLEGAWTTTPTQWDNGYFENLFGYEWELTKSPAGAWQWVPKDGAAEDTVP 350 (726)
T ss_pred CCcCHHHHHhccccccCCCC--CCCCCccccCCCCCCCCcchhhHHHHHHHhhCcceeccCCCccccccccCccccccCC
Confidence 999999999985 789962 22333355678 679999999999999974
Q ss_pred ----------cccchhhhhhhcCcCcHHHHHHHhhcHHHHHHHHHHHHHHHhh--CCCCCCCCC
Q 026488 171 ----------KGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSE--NNPLTGTKG 222 (238)
Q Consensus 171 ----------~gll~SD~~L~~d~~t~~~v~~yA~~~~~F~~~Fa~Am~Km~~--l~v~tG~~G 222 (238)
.+||.||++|..||+++++|++||.||++|+++|++||+||++ +|+++-..|
T Consensus 351 d~~~~~~~~~~~MLtSD~AL~~DP~~r~iV~~fA~d~~~F~~~FA~A~~KL~hrdmgp~~ry~g 414 (726)
T PRK15061 351 DAHDPSKKHAPTMLTTDLALRFDPEYEKISRRFLENPEEFADAFARAWFKLTHRDMGPKSRYLG 414 (726)
T ss_pred cccccccccCcccccccHHhhcCCcHHHHHHHHhcCHHHHHHHHHHHHHHHcccCCCchhhhcC
Confidence 5899999999999999999999999999999999999999966 666554444
No 13
>cd08201 plant_peroxidase_like_1 Uncharacterized family of plant peroxidase-like proteins. This is a subgroup of heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX) which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions.
Probab=100.00 E-value=1.8e-38 Score=277.32 Aligned_cols=171 Identities=19% Similarity=0.298 Sum_probs=141.7
Q ss_pred CCCCcchHHHHHHHHHHHHhhCCCcccHHHHHHHHhhhhHhhcCCCccccCCCCCCCCCchhhhhhccCCCCCCCHHHHH
Q 026488 3 RSFGMRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVL 82 (238)
Q Consensus 3 ~N~~l~g~~~i~~iK~~le~~c~~~VScADiialAa~~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~ 82 (238)
.|.+|++|+.|+.+ +||||||||||+++||+.+|||.|+|++||+|++++.+. .||.|+.++++|+
T Consensus 83 ~n~~l~~~~~i~~~----------~VScADiialAa~~AV~~~GGP~i~v~~GR~Da~~s~~~----glP~P~~~v~~l~ 148 (264)
T cd08201 83 FNTTLNFFVNFYSP----------RSSMADLIAMGVVTSVASCGGPVVPFRAGRIDATEAGQA----GVPEPQTDLGTTT 148 (264)
T ss_pred hhhccccceeeccC----------ccCHHHHHHHHHHHHHHHcCCCeecccccCCCccccccc----cCCCCccCHHHHH
Confidence 34567777776554 499999999999999999999999999999999988753 4999999999999
Q ss_pred HHHHhcCCCCCCceeeec-cccccccccccccccccCCCCCCCCcchhhHhhhcCCCCCCCCCCCccccCCCCCCCccCh
Q 026488 83 ERFAAIGIDAPGLVALLG-SHSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDN 161 (238)
Q Consensus 83 ~~F~~~Gl~~~elVaL~G-aHtiG~~~~~~f~~rl~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~~~~D~~tp~~fDn 161 (238)
+.|++|||+++|||+|+| |||||++||..|.++.- |.. ..+...+|| .||.+|||
T Consensus 149 ~~Fa~~Gfs~~DmVaLsggaHTiG~ahc~~f~~~~~----~g~-------------------~~~~~~p~d-stp~~FDn 204 (264)
T cd08201 149 ESFRRQGFSTSEMIALVACGHTLGGVHSEDFPEIVP----PGS-------------------VPDTVLQFF-DTTIQFDN 204 (264)
T ss_pred HHHHHcCCChHHHheeecCCeeeeecccccchhhcC----Ccc-------------------ccCCCCCCC-CCccccch
Confidence 999999999999999995 99999999998866531 110 001235677 59999999
Q ss_pred HHHHHhhccc--c--------cchhhhhhhcCcCcHHHHHHHhhcHHHHHHHHHHHHHHHhh
Q 026488 162 NYYRNILDNK--G--------LMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSE 213 (238)
Q Consensus 162 ~Yy~~l~~~~--g--------ll~SD~~L~~d~~t~~~v~~yA~~~~~F~~~Fa~Am~Km~~ 213 (238)
+||.+++.+. + .+.||..++....-. .++.+| +++.|.+.++..+.||.+
T Consensus 205 ~~f~E~l~g~~~~~L~~~~~~~~~sd~r~f~~d~n~-t~~~l~-~~~~f~~~c~~~~~~mi~ 264 (264)
T cd08201 205 KVVTEYLSGTTNNPLVVGPNNTTNSDLRIFSSDGNV-TMNELA-SPDTFQKTCADILQRMID 264 (264)
T ss_pred HHHHHHhcCCCCCceeecCCCCccchhhheecCccH-HHHHhc-ChHHHHHHHHHHHHHHhC
Confidence 9999999764 2 357999999866554 467787 799999999999999974
No 14
>cd08200 catalase_peroxidase_2 C-terminal non-catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C-terminal do
Probab=100.00 E-value=9.1e-35 Score=256.97 Aligned_cols=178 Identities=22% Similarity=0.352 Sum_probs=143.4
Q ss_pred CCCCC--c-chHHHHHHHHHHHHhh-CC-CcccHHHHHHHHhhhhHhhcCC-----CccccCCCCCCCCCchhhhh--hc
Q 026488 2 DRSFG--M-RNFRYIENIKEAVERE-CP-GVVSCADILVLSGRDGVVALGG-----PYIPLKTGRRDGRKSRAEIL--EQ 69 (238)
Q Consensus 2 ~~N~~--l-~g~~~i~~iK~~le~~-c~-~~VScADiialAa~~Av~~~GG-----P~~~v~~GR~D~~~s~~~~~--~~ 69 (238)
+.|.+ | +.+.++++||+++... -+ ..||+||+|+||+.+|||.+|| |.+++.+||.|++....... ..
T Consensus 67 ~~N~~~~L~~~~~~Le~ik~~~~~~~~~~~~vS~ADLivLaG~vAiE~agg~ag~~p~Ipf~pGR~Da~~~~td~~sf~~ 146 (297)
T cd08200 67 EVNEPEELAKVLAVLEGIQKEFNESQSGGKKVSLADLIVLGGCAAVEKAAKDAGVDIKVPFTPGRTDATQEQTDVESFEV 146 (297)
T ss_pred CccCcHHHHHHHHHHHHHHHHhcccccCCccccHHHHHHHHhHHHHHHHHhccCCCceeccCCCCCCcccCCCCcccccc
Confidence 45877 8 7899999999998421 11 1599999999999999999999 99999999999987543210 11
Q ss_pred cCCCCC------------CCHHHHHHHHHhcCCCCCCceeeeccc-cccccccccccccccCCCCCCCCcchhhHhhhcC
Q 026488 70 YLPDHN------------DSMSVVLERFAAIGIDAPGLVALLGSH-SVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKC 136 (238)
Q Consensus 70 ~lP~p~------------~~~~~l~~~F~~~Gl~~~elVaL~GaH-tiG~~~~~~f~~rl~~~~dp~~d~~~~~~L~~~C 136 (238)
.+|.+. ...+.|++.|.+|||+++|||||+||| ++|..|..++.
T Consensus 147 l~P~adg~rny~~~~~~~~~~~~Lrd~f~rlglsd~EmvaL~Gg~r~lG~~~~~s~~----------------------- 203 (297)
T cd08200 147 LEPKADGFRNYLKKGYRVPPEEMLVDKAQLLTLTAPEMTVLVGGLRVLGANYGGSKH----------------------- 203 (297)
T ss_pred cCCCCcccccccccCCCCCHHHHHHHHHHhCCCChHHHhheecchhhcccCCCCCCC-----------------------
Confidence 345332 234789999999999999999999997 79988754211
Q ss_pred CCCCCCCCCCccccCCCCCCCccChHHHHHhhccc--------------------c-----cchhhhhhhcCcCcHHHHH
Q 026488 137 PDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNK--------------------G-----LMMVDHQLATDKRTRPYVK 191 (238)
Q Consensus 137 p~~~~~~~~~~~~~~D~~tp~~fDn~Yy~~l~~~~--------------------g-----ll~SD~~L~~d~~t~~~v~ 191 (238)
+.| +.+|.+|||.||++|+... | .+.+|..|.+|++.+++|+
T Consensus 204 -------G~w------T~~p~~f~N~fF~nLLd~~~~W~~~~~~~~~~~~~dr~~g~~~~~~t~~Dl~l~sd~~~R~~ve 270 (297)
T cd08200 204 -------GVF------TDRPGVLTNDFFVNLLDMSTEWKPADEDDGLFEGRDRKTGEVKWTATRVDLVFGSNSELRAVAE 270 (297)
T ss_pred -------CCC------cCCCCccccHHHHHHhcccceeeecCCCCCceeeccCCCCceeeccChhhhhhccCHHHHHHHH
Confidence 222 3689999999999998520 1 2678999999999999999
Q ss_pred HHhhc--HHHHHHHHHHHHHHHhhCC
Q 026488 192 KMAKS--QDYFFKEFSRAITLLSENN 215 (238)
Q Consensus 192 ~yA~~--~~~F~~~Fa~Am~Km~~l~ 215 (238)
.||.| |+.||+||++||.||+++.
T Consensus 271 ~YA~dd~~~~F~~DF~~A~~Klmeld 296 (297)
T cd08200 271 VYASDDAQEKFVKDFVAAWTKVMNLD 296 (297)
T ss_pred HHhcccchhHHHHHHHHHHHHHHhcC
Confidence 99998 9999999999999999874
No 15
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=99.96 E-value=7.5e-30 Score=246.51 Aligned_cols=178 Identities=21% Similarity=0.361 Sum_probs=144.0
Q ss_pred CCCC--Cc-chHHHHHHHHHHHHhhCC--CcccHHHHHHHHhhhhHhhc---CC--CccccCCCCCCCCCchhhhhh---
Q 026488 2 DRSF--GM-RNFRYIENIKEAVERECP--GVVSCADILVLSGRDGVVAL---GG--PYIPLKTGRRDGRKSRAEILE--- 68 (238)
Q Consensus 2 ~~N~--~l-~g~~~i~~iK~~le~~c~--~~VScADiialAa~~Av~~~---GG--P~~~v~~GR~D~~~s~~~~~~--- 68 (238)
+.|. +| +.+.+++.||+++...-. ..||.||+|+||+.+|||.+ || |.+++.+||.|++.... +++
T Consensus 492 ~~N~p~~L~~vl~~LE~Ik~~f~~~~~~~~~vS~ADLivLaG~vAIE~aa~~aG~~~~VPf~pGR~Da~~~~t-d~esf~ 570 (726)
T PRK15061 492 EVNEPAQLAKVLAVLEGIQAEFNAAQSGGKKVSLADLIVLGGNAAVEQAAKAAGHDVTVPFTPGRTDATQEQT-DVESFA 570 (726)
T ss_pred cccCHHHHHHHHHHHHHHHHHHhhccCCCCceeHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCCcccCCC-Cccccc
Confidence 4577 88 789999999999864321 25999999999999999998 68 99999999999987543 222
Q ss_pred ccCCCCC------------CCHHHHHHHHHhcCCCCCCceeeeccc-cccccccccccccccCCCCCCCCcchhhHhhhc
Q 026488 69 QYLPDHN------------DSMSVVLERFAAIGIDAPGLVALLGSH-SVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHK 135 (238)
Q Consensus 69 ~~lP~p~------------~~~~~l~~~F~~~Gl~~~elVaL~GaH-tiG~~~~~~f~~rl~~~~dp~~d~~~~~~L~~~ 135 (238)
..+|.+. ...+.|++.|.++||+++|||||+||| ++|..|..++.
T Consensus 571 ~l~P~Adgfrny~~~~~~~~~e~~L~d~a~~lglt~~EmvaL~Gg~r~Lg~~~~~S~~---------------------- 628 (726)
T PRK15061 571 VLEPKADGFRNYLKKGYSVSPEELLVDKAQLLTLTAPEMTVLVGGLRVLGANYGGSKH---------------------- 628 (726)
T ss_pred ccCCCCccccccccccCCCCHHHHHHHHHHhCCCChHHHhheecchhhcccCCCCCCC----------------------
Confidence 2456543 134789999999999999999999997 78888754211
Q ss_pred CCCCCCCCCCCccccCCCCCCCccChHHHHHhhccc--------------------c---c--chhhhhhhcCcCcHHHH
Q 026488 136 CPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNK--------------------G---L--MMVDHQLATDKRTRPYV 190 (238)
Q Consensus 136 Cp~~~~~~~~~~~~~~D~~tp~~fDn~Yy~~l~~~~--------------------g---l--l~SD~~L~~d~~t~~~v 190 (238)
+.+ +.+|.+|||.||++|+... | + +.+|..|.+|++.|++|
T Consensus 629 --------G~~------T~~p~~fsNdfFvnLLdm~~~W~~~~~~~~~ye~~Dr~tg~~~~~~t~~Dlvfgsds~lRa~a 694 (726)
T PRK15061 629 --------GVF------TDRPGVLTNDFFVNLLDMGTEWKPTDEDEEVYEGRDRKTGEVKWTATRVDLVFGSNSQLRALA 694 (726)
T ss_pred --------CCC------cCCCCccccHHHHHHhcCCceeeecCCCCCceeeccCCCcceeeccChhheecccCHHHHHHH
Confidence 222 3589999999999999521 1 1 47899999999999999
Q ss_pred HHHhhc--HHHHHHHHHHHHHHHhhCCC
Q 026488 191 KKMAKS--QDYFFKEFSRAITLLSENNP 216 (238)
Q Consensus 191 ~~yA~~--~~~F~~~Fa~Am~Km~~l~v 216 (238)
+.||.| +++|++||++||.|+++++-
T Consensus 695 EvYA~dd~~~kF~~DF~~Aw~Kvmeldr 722 (726)
T PRK15061 695 EVYASDDAKEKFVRDFVAAWTKVMNLDR 722 (726)
T ss_pred HHHhcccchhHHHHHHHHHHHHHHhCCC
Confidence 999999 99999999999999999963
No 16
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=99.96 E-value=4.9e-30 Score=248.89 Aligned_cols=175 Identities=23% Similarity=0.368 Sum_probs=140.9
Q ss_pred CCC--CCc-chHHHHHHHHHHHHhhCCCcccHHHHHHHHhhhhHhhc---CCC--ccccCCCCCCCCCchhhhhhccCC-
Q 026488 2 DRS--FGM-RNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVAL---GGP--YIPLKTGRRDGRKSRAEILEQYLP- 72 (238)
Q Consensus 2 ~~N--~~l-~g~~~i~~iK~~le~~c~~~VScADiialAa~~Av~~~---GGP--~~~v~~GR~D~~~s~~~~~~~~lP- 72 (238)
+.| .+| +.+.+++.||+++.. ..||.||+|+||+.+|||.+ ||| .+++.+||.|++.... +++..+|
T Consensus 485 ~~N~p~gL~~vl~~Le~Ik~~f~~---~~vS~ADLivLaG~vAVE~aa~~gG~~~~Vpf~pGR~Da~~~~t-d~~~~~~l 560 (716)
T TIGR00198 485 PVNEPTRLAKVLAVLEKIQAEFAK---GPVSLADLIVLGGGAAVEKAALDAGISVNVPFLPGRVDATQAMT-DAESFTPL 560 (716)
T ss_pred ccCCHHHHHHHHHHHHHHHHHcCC---CcccHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCccccCCC-CccccccC
Confidence 357 688 789999999998831 26999999999999999998 898 5789999999987643 2222222
Q ss_pred --CC------------CCCHHHHHHHHHhcCCCCCCceeeecc-ccccccccccccccccCCCCCCCCcchhhHhhhcCC
Q 026488 73 --DH------------NDSMSVVLERFAAIGIDAPGLVALLGS-HSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCP 137 (238)
Q Consensus 73 --~p------------~~~~~~l~~~F~~~Gl~~~elVaL~Ga-HtiG~~~~~~f~~rl~~~~dp~~d~~~~~~L~~~Cp 137 (238)
.+ ......|++.|.++||+++|||||+|| |++|+.|..++.
T Consensus 561 ~p~adgfRn~~~~~~~~~~~~~l~d~a~~lglt~~EmvaL~Gg~r~lG~~~~~s~~------------------------ 616 (716)
T TIGR00198 561 EPIADGFRNYLKRDYAVTPEELLLDKAQLLTLTAPEMTVLIGGMRVLGANHGGSKH------------------------ 616 (716)
T ss_pred CCCCcccchhccccccCCHHHHHHHHHHhCCCChHHHHheecchhhccccCCCCCC------------------------
Confidence 11 123466899999999999999999998 599999864321
Q ss_pred CCCCCCCCCccccCCCCCCCccChHHHHHhhccc--------------------c---c--chhhhhhhcCcCcHHHHHH
Q 026488 138 DAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNK--------------------G---L--MMVDHQLATDKRTRPYVKK 192 (238)
Q Consensus 138 ~~~~~~~~~~~~~~D~~tp~~fDn~Yy~~l~~~~--------------------g---l--l~SD~~L~~d~~t~~~v~~ 192 (238)
+.+ +.+|.+|||.||++|+... | + ..+|..|.+|++.|++|+.
T Consensus 617 ------G~~------T~~p~~f~NdfF~~LLd~~~~w~~~~~~~~~~~~~dr~tg~~~~~~t~~Dl~~~sd~~lra~aE~ 684 (716)
T TIGR00198 617 ------GVF------TDRVGVLSNDFFVNLLDMAYEWRAADNNRYLFEGGDRQTGEVKWTATRVDLVFGSNSILRAVAEV 684 (716)
T ss_pred ------CCC------cCCCCccccHHHHHHhcCCceeeecCCCCceeeeecCCCCceeeccChhheeeccCHHHHHHHHH
Confidence 222 3589999999999998621 1 2 2789999999999999999
Q ss_pred HhhcH--HHHHHHHHHHHHHHhhCCC
Q 026488 193 MAKSQ--DYFFKEFSRAITLLSENNP 216 (238)
Q Consensus 193 yA~~~--~~F~~~Fa~Am~Km~~l~v 216 (238)
||+|+ +.|++||++||.||++++-
T Consensus 685 YA~dd~~~~F~~DF~~Aw~Klm~ldr 710 (716)
T TIGR00198 685 YAQDDAREKFVKDFVAAWTKVMNLDR 710 (716)
T ss_pred HhcccccchHHHHHHHHHHHHHhCCC
Confidence 99997 8999999999999999874
No 17
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.96 E-value=4.3e-29 Score=232.07 Aligned_cols=207 Identities=19% Similarity=0.272 Sum_probs=166.0
Q ss_pred CCCCCc-chHHHHHHHHHHHHhhCCCcccHHHHHHHHhhhhHhhcCCCccccCCCCCCCCCchhh---------------
Q 026488 2 DRSFGM-RNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAE--------------- 65 (238)
Q Consensus 2 ~~N~~l-~g~~~i~~iK~~le~~c~~~VScADiialAa~~Av~~~GGP~~~v~~GR~D~~~s~~~--------------- 65 (238)
|.|.+| +++.+++.||+++ +..||+||+|.|++.+|++.+|++.+.+..||.|-..+...
T Consensus 132 PDN~nLDKarRLLWPIKkKY----G~kiSWaDL~iLaGnvAlEsMGfktfGFa~GR~D~wepd~dvyWG~e~~wl~d~Ry 207 (730)
T COG0376 132 PDNANLDKARRLLWPIKKKY----GRKISWADLIILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGSEKTWLGDERY 207 (730)
T ss_pred CcccchHHHHHHhhhHhHhh----cccccHhHhhhhhchhhhhhcCCccccccCCCCcCCCCccccccCccccccccccc
Confidence 568899 8999999999998 66899999999999999999999999999999998776651
Q ss_pred ----------------------hhhccCCCCCCCHHHHHHHHHhcCCCCCCceeee-ccccccccccccccccccCCCCC
Q 026488 66 ----------------------ILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALL-GSHSVGRTHCVKLVHRLYPEVDP 122 (238)
Q Consensus 66 ----------------------~~~~~lP~p~~~~~~l~~~F~~~Gl~~~elVaL~-GaHtiG~~~~~~f~~rl~~~~dp 122 (238)
+-.+..|+|..+..+++..|++|+++++|.|||+ ||||+|++|...-..-+ +++|
T Consensus 208 ~~~~~Le~PlaavqMGLIYVNPEGpng~PDpl~aA~dIRetFaRMaMNDeETVALiaGGHtfGKtHGag~a~~v--g~eP 285 (730)
T COG0376 208 SGDRDLENPLAAVQMGLIYVNPEGPNGNPDPLAAARDIRETFARMAMNDEETVALIAGGHTFGKTHGAGPASNV--GPEP 285 (730)
T ss_pred cccccccCchhhheeeeEEeCCCCCCCCCChhhhHHHHHHHHHHhcCCcHhhhhhhhcccccccccCCCchhhc--CCCc
Confidence 1234578888999999999999999999999999 69999999976421111 4677
Q ss_pred CCCcchhhHhh--hcCCCCCCCCCCCccccCC---CCCCCccChHHHHHhhcc---------------------------
Q 026488 123 ALNPDHVPHML--HKCPDAIPDPKAVQYVRND---RGTPMVLDNNYYRNILDN--------------------------- 170 (238)
Q Consensus 123 ~~d~~~~~~L~--~~Cp~~~~~~~~~~~~~~D---~~tp~~fDn~Yy~~l~~~--------------------------- 170 (238)
.-.+--.+.|- ..|... .+.+.....+. +.||++|||+||.+|+..
T Consensus 286 e~a~ie~qGlGW~~~~g~G--~G~dtitsGlE~~Wt~tPT~w~n~ff~~Lf~yEWeltksPAGa~Qw~~k~~~~~~~pd~ 363 (730)
T COG0376 286 EAAPIEQQGLGWANTYGSG--KGPDTITSGLEGAWTTTPTQWSNEFFENLFNYEWELTKSPAGAWQWDAKSAAAETIPDA 363 (730)
T ss_pred cccchhhhccccccccCCC--cCcccccccccccCCCCcchhhhHHHHHHhccceeeecCCCccccccccCccccCCCCC
Confidence 65554444443 334321 12221122222 468999999999999852
Q ss_pred --------cccchhhhhhhcCcCcHHHHHHHhhcHHHHHHHHHHHHHHHhhCCC
Q 026488 171 --------KGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNP 216 (238)
Q Consensus 171 --------~gll~SD~~L~~d~~t~~~v~~yA~~~~~F~~~Fa~Am~Km~~l~v 216 (238)
..||.+|.+|..||..+.+.++|..||+.|.+.|++||.||.+-++
T Consensus 364 ~dp~~~~~p~MlttDlaLr~DP~Y~kIs~rf~e~pd~F~~~FArAWfKLtHRDM 417 (730)
T COG0376 364 HDPSKKHGPMMLTTDLALRFDPEYEKISRRFLEDPDEFADAFARAWFKLTHRDM 417 (730)
T ss_pred CCcccccCceeeccchhhhcChHHHHHHHHHHhCHHHHHHHHHHHHHHHhhccC
Confidence 1489999999999999999999999999999999999999998654
No 18
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.37 E-value=2.5e-12 Score=120.87 Aligned_cols=167 Identities=25% Similarity=0.420 Sum_probs=121.0
Q ss_pred chHHHHHHHHHHHHhhCCCcccHHHHHHHHhhhhHhhc---CCCc--cccCCCCCCCCCchhhhhhcc--C-CCC--C--
Q 026488 8 RNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVAL---GGPY--IPLKTGRRDGRKSRAEILEQY--L-PDH--N-- 75 (238)
Q Consensus 8 ~g~~~i~~iK~~le~~c~~~VScADiialAa~~Av~~~---GGP~--~~v~~GR~D~~~s~~~~~~~~--l-P~p--~-- 75 (238)
+-+.+++.|.+.+. ..||.||+|+|++..|||.+ +|-. +++..||.|++..... ++.. | |-. +
T Consensus 511 kvl~~le~iq~~fn----kkvSlADlIVL~G~a~ie~AAk~aG~~v~VPF~pGR~DA~qeqtD-v~sf~~LeP~aDGfRN 585 (730)
T COG0376 511 KVLAVLEKIQKEFN----KKVSLADLIVLGGNAAVEKAAKAAGFSVTVPFAPGRTDASQEQTD-VESFAVLEPIADGFRN 585 (730)
T ss_pred HHHHHHHHHHHHhc----CccchhHheeecchHHHHHHHHhcCceeeeccCCCCcccchhhcc-hhhhhcccccchhhhh
Confidence 56788888888775 46999999999999999984 6654 5678999999765432 2211 1 211 1
Q ss_pred --------CCHHHHHHHHHhcCCCCCCceeeeccc-cccccccccccccccCCCCCCCCcchhhHhhhcCCCCCCCCCCC
Q 026488 76 --------DSMSVVLERFAAIGIDAPGLVALLGSH-SVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAV 146 (238)
Q Consensus 76 --------~~~~~l~~~F~~~Gl~~~elVaL~GaH-tiG~~~~~~f~~rl~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~ 146 (238)
.+..-|++.-+-++|+.-||++|+||. -+|..+.. ..
T Consensus 586 y~~~~~~~~pe~~LvDkAqlL~LtapemtVLiGGlRvLg~n~g~----------------------------------s~ 631 (730)
T COG0376 586 YVKKDYVLTPEELLVDKAQLLTLTAPEMTVLIGGLRVLGANYGG----------------------------------SK 631 (730)
T ss_pred hccCCCcCCHHHHHHHHHHHhccCCccceEEEcceEeeccCCCC----------------------------------Cc
Confidence 223458888889999999999999874 44443321 12
Q ss_pred ccccCCCCCCCccChHHHHHhhcc----------c----------c-----cchhhhhhhcCcCcHHHHHHHhhc--HHH
Q 026488 147 QYVRNDRGTPMVLDNNYYRNILDN----------K----------G-----LMMVDHQLATDKRTRPYVKKMAKS--QDY 199 (238)
Q Consensus 147 ~~~~~D~~tp~~fDn~Yy~~l~~~----------~----------g-----ll~SD~~L~~d~~t~~~v~~yA~~--~~~ 199 (238)
..+. +..|.++.|.||.||+.. + | --..|..+-+++..|.+.+-||.+ ++.
T Consensus 632 ~GVf--T~~pg~LtndFFvnLlDM~~~W~~~~~~~~~feg~DrktG~~kwt~trvDLvfGsns~LRA~aEVYa~dda~ek 709 (730)
T COG0376 632 HGVF--TDRPGVLTNDFFVNLLDMGTEWKPTDDARGLFEGRDRKTGEVKWTATRVDLVFGSNSELRALAEVYASDDAKEK 709 (730)
T ss_pred ccee--ccCcccccchhhhhhhhccceeeeccccccceeccccccCceEeeeeEEeEEecCcHHHHHHHHHHhccchHHH
Confidence 2233 346778888888888752 1 1 125777888889999999999985 889
Q ss_pred HHHHHHHHHHHHhhCC
Q 026488 200 FFKEFSRAITLLSENN 215 (238)
Q Consensus 200 F~~~Fa~Am~Km~~l~ 215 (238)
|.+||++||.|++++.
T Consensus 710 Fv~DFvaaw~kVMn~D 725 (730)
T COG0376 710 FVKDFVAAWTKVMNLD 725 (730)
T ss_pred HHHHHHHHHHHHhccc
Confidence 9999999999999885
No 19
>PF11895 DUF3415: Domain of unknown function (DUF3415); InterPro: IPR024589 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Peroxidases are found in bacteria, fungi, plants and animals. Fungal ligninases are extracellular haem enzymes involved in the degradation of lignin. They include lignin peroxidases (LiPs), manganese-dependent peroxidases (MnPs) and versatile peroxidases, which combine the substrate-specificity characteristics of the other two []. In MnP, Mn2+ serves as the reducing substrate []. It is commonly thought that the plant polymer lignin is the second most abundant organic compound on Earth, exceeded only by cellulose. Higher plants synthesise vast quantities of insoluble macromolecules, including lignins. Lignin is an amorphous three-dimensional aromatic biopolymer composed of oxyphenylpropane units. Biodegradation of lignins is slow - it is probable that their decomposition is the rate-limiting step in the biospheric carbon-oxygen cycle, which is mediated almost entirely by the catabolic activities of microorganisms. The white-rot fungi are able extensively to decompose all the important structural components of wood, including both cellulose and lignin. Under the proper environmental conditions, white-rot fungi completely degrade all structural components of lignin, with ultimate formation of CO2 and H2O. The first step in lignin degradation is depolymerisation, catalysed by the LiPs (ligninases). LiPs are secreted, along with hydrogen peroxide (H2O2), by white-rot fungi under conditions of nutrient limitation. The enzymes are not only important in lignin biodegradation, but are also potentially valuable in chemical waste disposal because of their ability to degrade environmental pollutants []. To date, 3D structures have been determined for LiP [] and MnP [] from Phanerochaete chrysosporium (White-rot fungus), and for the fungal peroxidase from Arthromyces ramosus []. All these proteins share the same architecture and consist of 2 all-alpha domains, between which is embedded the haem group. The helical topography of LiPs is nearly identical to that of yeast cytochrome c peroxidase (CCP) [], despite the former having 4 disulphide bonds, which are absent in CCP (MnP has an additional disulphide bond at the C terminus). This uncharacterised C-terminal domain is found in fungal ligninases. It is about 80 amino acids in length and associated with Pfam:PF00141.; PDB: 1B85_B 1B82_A 1B80_A 1YYG_A 1YZP_A 1MNP_A 1MN1_A 1YZR_A 1MN2_A 3M8M_A ....
Probab=85.19 E-value=0.91 Score=33.12 Aligned_cols=30 Identities=17% Similarity=0.089 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHhhCCCCCCCCCcccccccccc
Q 026488 199 YFFKEFSRAITLLSENNPLTGTKGEIRKVCNLAN 232 (238)
Q Consensus 199 ~F~~~Fa~Am~Km~~l~v~tG~~GeiR~~C~~~n 232 (238)
.....|..||.||+.| |++-.---+||.|-
T Consensus 2 ~m~~~F~~am~KlavL----G~d~~~LiDCSdVI 31 (80)
T PF11895_consen 2 KMQSAFKAAMAKLAVL----GHDRSDLIDCSDVI 31 (80)
T ss_dssp HHHHHHHHHHHHHCTT----TS-GGGSEE-GGGS
T ss_pred hHHHHHHHHHHHHHHh----cCChhhcccchhhc
Confidence 4567999999999999 65656666898875
No 20
>KOG0400 consensus 40S ribosomal protein S13 [Translation, ribosomal structure and biogenesis]
Probab=52.98 E-value=9 Score=30.65 Aligned_cols=35 Identities=23% Similarity=0.447 Sum_probs=28.1
Q ss_pred CCHHHHHHHHHhcCCCCCCceeee-ccccccccccc
Q 026488 76 DSMSVVLERFAAIGIDAPGLVALL-GSHSVGRTHCV 110 (238)
Q Consensus 76 ~~~~~l~~~F~~~Gl~~~elVaL~-GaHtiG~~~~~ 110 (238)
+++.+.+-.|+++||++.++=+++ -+|-||+++-.
T Consensus 31 ddvkeqI~K~akKGltpsqIGviLRDshGi~q~r~v 66 (151)
T KOG0400|consen 31 DDVKEQIYKLAKKGLTPSQIGVILRDSHGIGQVRFV 66 (151)
T ss_pred HHHHHHHHHHHHcCCChhHceeeeecccCcchhhee
Confidence 456777789999999998886655 89999988743
No 21
>PTZ00411 transaldolase-like protein; Provisional
Probab=48.26 E-value=1.5e+02 Score=27.33 Aligned_cols=48 Identities=19% Similarity=0.222 Sum_probs=29.0
Q ss_pred cCCCccccCCCCCCCCCchhhhhhccCCCCC---CCHHHHHHHHHhcCCCC
Q 026488 45 LGGPYIPLKTGRRDGRKSRAEILEQYLPDHN---DSMSVVLERFAAIGIDA 92 (238)
Q Consensus 45 ~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~---~~~~~l~~~F~~~Gl~~ 92 (238)
+|-..+..+.||.+.....+.......+... ..+.++.++|++.|+..
T Consensus 180 AGa~~ISPfVGRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~g~~T 230 (333)
T PTZ00411 180 AGVTLISPFVGRILDWYKKPEKAESYVGAQDPGVISVTKIYNYYKKHGYKT 230 (333)
T ss_pred cCCCEEEeecchHHHhcccccccccccccCCchHHHHHHHHHHHHHcCCCe
Confidence 5778889999999665332211111112222 34667888888888864
No 22
>PRK05264 transcriptional repressor protein MetJ; Provisional
Probab=38.46 E-value=27 Score=26.17 Aligned_cols=46 Identities=26% Similarity=0.374 Sum_probs=35.1
Q ss_pred hhhcCcCcHHHHH--HHhhcHHHHHHHHHHHHHHHhhCCCCCCCCCccccccc
Q 026488 179 QLATDKRTRPYVK--KMAKSQDYFFKEFSRAITLLSENNPLTGTKGEIRKVCN 229 (238)
Q Consensus 179 ~L~~d~~t~~~v~--~yA~~~~~F~~~Fa~Am~Km~~l~v~tG~~GeiR~~C~ 229 (238)
.+++|.+||+.|+ +.|.|.++.-+.|-.||. |..--.+...||++.
T Consensus 35 kiLTdERTRRQvnNLRHATNSELLCEAFLHA~T-----GQPLP~D~Dl~Kd~~ 82 (105)
T PRK05264 35 KILTDERTRRQVNNLRHATNSELLCEAFLHAFT-----GQPLPDDEDLRKERS 82 (105)
T ss_pred HHHhhHHHHHHHhhhhhcccHHHHHHHHHHHHc-----CCCCCChhhhhhcCc
Confidence 5789999999995 468899999999999985 333345566776654
No 23
>cd00490 Met_repressor_MetJ Met Repressor, MetJ. MetJ is a bacterial regulatory protein that uses S-adenosylmethionine (SAM) as a corepressor to regulate the production of Methionine. MetJ binds arrays of two to five adjacent copies of an eight base-pair 'metbox' sequence. MetJ forms sufficiently strong interactions with the sugar-phosphate backbone to accomodate sequence variation in natural operators. However, it is very sensitive to particular base changes in the operator. MetJ exists as a homodimer.
Probab=36.71 E-value=30 Score=25.79 Aligned_cols=46 Identities=26% Similarity=0.383 Sum_probs=35.1
Q ss_pred hhhcCcCcHHHHH--HHhhcHHHHHHHHHHHHHHHhhCCCCCCCCCccccccc
Q 026488 179 QLATDKRTRPYVK--KMAKSQDYFFKEFSRAITLLSENNPLTGTKGEIRKVCN 229 (238)
Q Consensus 179 ~L~~d~~t~~~v~--~yA~~~~~F~~~Fa~Am~Km~~l~v~tG~~GeiR~~C~ 229 (238)
.+++|.+|++.|+ +.|.|.++.-+.|-.||. |..--.+..+||+|.
T Consensus 34 kiLTdERTRRQvnnlRHATNSELLCEAFLHAfT-----GQPLP~D~Dl~K~~~ 81 (103)
T cd00490 34 KILTDERTRRQVNNLRHATNSELLCEAFLHAFT-----GQPLPDDADLRKERS 81 (103)
T ss_pred HHHhhHHHHHHHhhhhhcccHHHHHHHHHHHhc-----CCCCCChhhhhhcCc
Confidence 5678999999995 467899999999999985 333345666777664
No 24
>PLN00017 photosystem I reaction centre subunit VI; Provisional
Probab=31.77 E-value=27 Score=25.75 Aligned_cols=21 Identities=24% Similarity=0.368 Sum_probs=16.8
Q ss_pred HHhhcHHHHHHHHHHHHHHHh
Q 026488 192 KMAKSQDYFFKEFSRAITLLS 212 (238)
Q Consensus 192 ~yA~~~~~F~~~Fa~Am~Km~ 212 (238)
+|-..|..||+.|+..+.|=.
T Consensus 37 rY~~~QskFFe~~A~~~tkR~ 57 (90)
T PLN00017 37 RYNPLQSKFFETFAAPFTKRG 57 (90)
T ss_pred CCChHHHHHHHHHhhhhhHHH
Confidence 366679999999999887743
No 25
>TIGR00874 talAB transaldolase. This family includes the majority of known and predicted transaldolase sequences, including E. coli TalA and TalB. It excluded two other families. The first includes E. coli transaldolase-like protein TalC. The second family includes the putative transaldolases of Helicobacter pylori and Mycobacterium tuberculosis.
Probab=29.79 E-value=3.6e+02 Score=24.76 Aligned_cols=51 Identities=14% Similarity=0.041 Sum_probs=30.0
Q ss_pred cCCCccccCCCCCCCCCchhhhhhccCCC---CCCCHHHHHHHHHhcCCCCCCc
Q 026488 45 LGGPYIPLKTGRRDGRKSRAEILEQYLPD---HNDSMSVVLERFAAIGIDAPGL 95 (238)
Q Consensus 45 ~GGP~~~v~~GR~D~~~s~~~~~~~~lP~---p~~~~~~l~~~F~~~Gl~~~el 95 (238)
+|...+..+.||.+-............+. +-..+.++..+|++.|+..+=|
T Consensus 168 AGa~~ISPFVgRi~dw~~~~~g~~~~~~~~d~Gv~~v~~i~~~~k~~g~~T~Im 221 (317)
T TIGR00874 168 AKVTLISPFVGRILDWYKAATGKKEYSIEEDPGVASVKKIYNYYKKHGYPTEVM 221 (317)
T ss_pred cCCCEEEeecchHhHhhhhccCccccccccCchHHHHHHHHHHHHHcCCCcEEE
Confidence 58888999999987642221100011111 2235677888888889875433
No 26
>PF01340 MetJ: Met Apo-repressor, MetJ; InterPro: IPR002084 Binding of a specific DNA fragment and S-adenosyl methionine (SAM) co-repressor molecules to the Escherichia coli methionine repressor (MetJ) leads to a significant reduction in dynamic flexibility of the ternary complex, with considerable entropy-enthalpy compensation, not necessarily involving any overall conformational change []. MetJ is a regulatory protein which when combined with S-adenosylmethionine (SAM) represses the expression of the methionine regulon and of enzymes involved in SAM synthesis. It is also autoregulated. The crystal structure of the met repressor-operator complex shows two dimeric repressor molecules bound to adjacent sites 8 base pairs apart on an 18-base-pair DNA fragment. Sequence specificity is achieved by insertion of double-stranded antiparallel protein beta-ribbons into the major groove of B-form DNA, with direct hydrogen-bonding between amino-acid side chains and the base pairs. The repressor also recognises sequence-dependent distortion or flexibility of the operator phosphate backbone, conferring specificity even for inaccessible base pairs [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0006555 methionine metabolic process; PDB: 1MJO_D 1CMB_A 1MJQ_C 1CMC_B 1MJK_A 1MJ2_A 1MJP_A 1MJM_B 1CMA_B 1MJL_A ....
Probab=23.44 E-value=28 Score=25.96 Aligned_cols=31 Identities=32% Similarity=0.470 Sum_probs=25.9
Q ss_pred hhhcCcCcHHHHHH--HhhcHHHHHHHHHHHHH
Q 026488 179 QLATDKRTRPYVKK--MAKSQDYFFKEFSRAIT 209 (238)
Q Consensus 179 ~L~~d~~t~~~v~~--yA~~~~~F~~~Fa~Am~ 209 (238)
.+++|.+|++.|+. .|.|.++.-+.|-.||.
T Consensus 34 kvLtdERTrRQvnNLRHATNSeLLcEAFLHAfT 66 (104)
T PF01340_consen 34 KVLTDERTRRQVNNLRHATNSELLCEAFLHAFT 66 (104)
T ss_dssp HHHHHHHHHHHHTTBSS-SHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHhhhhhcccHHHHHHHHHHHhc
Confidence 56789999999864 57899999999999986
No 27
>COG3060 MetJ Transcriptional regulator of met regulon [Transcription / Amino acid transport and metabolism]
Probab=23.10 E-value=82 Score=23.32 Aligned_cols=31 Identities=32% Similarity=0.480 Sum_probs=26.0
Q ss_pred hhhcCcCcHHHHHH--HhhcHHHHHHHHHHHHH
Q 026488 179 QLATDKRTRPYVKK--MAKSQDYFFKEFSRAIT 209 (238)
Q Consensus 179 ~L~~d~~t~~~v~~--yA~~~~~F~~~Fa~Am~ 209 (238)
.+++|.+|++.|+. .|.|.++.-+.|-.||.
T Consensus 35 ~ilt~ertrrq~~nlrhatnsellceaflhaft 67 (105)
T COG3060 35 KILTDERTRRQVNNLRHATNSELLCEAFLHAFT 67 (105)
T ss_pred HHHhhHHHHHHHHhhhhhhhHHHHHHHHHHHHc
Confidence 56789999998864 57799999999999885
No 28
>COG2877 KdsA 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase [Cell envelope biogenesis, outer membrane]
Probab=23.09 E-value=51 Score=29.27 Aligned_cols=33 Identities=18% Similarity=0.477 Sum_probs=26.6
Q ss_pred Cc-chHHHHHHHHHHH----------HhhCCCcccHHHHHHHHh
Q 026488 6 GM-RNFRYIENIKEAV----------ERECPGVVSCADILVLSG 38 (238)
Q Consensus 6 ~l-~g~~~i~~iK~~l----------e~~c~~~VScADiialAa 38 (238)
|| .|++++++||+++ +.+|..+-.-+|||++-|
T Consensus 72 GLeeglki~~~vK~efgv~ilTDVHe~~q~~~vA~VvDilQiPA 115 (279)
T COG2877 72 GLEEGLKILQEVKEEFGVPILTDVHEPSQAQPVAEVVDVLQIPA 115 (279)
T ss_pred CHHHHHHHHHHHHHHcCCceeeccCChhhcchHHhhhhhhcchH
Confidence 45 6899999999986 346777678899999877
No 29
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=20.53 E-value=1.6e+02 Score=21.50 Aligned_cols=31 Identities=10% Similarity=0.098 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHhhCCCcccHHHHHHHHhhhh
Q 026488 11 RYIENIKEAVERECPGVVSCADILVLSGRDG 41 (238)
Q Consensus 11 ~~i~~iK~~le~~c~~~VScADiialAa~~A 41 (238)
+|.|.+.+..+..-.+.||.+|+.++|-..|
T Consensus 49 ~V~~sl~kL~~La~~N~v~feeLc~YAL~~a 79 (82)
T PF11020_consen 49 KVMDSLSKLYKLAKENNVSFEELCVYALGVA 79 (82)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 4555665555555556799999999986555
No 30
>PF09533 DUF2380: Predicted lipoprotein of unknown function (DUF2380); InterPro: IPR011755 This family consists of at least 9 paralogs in Myxococcus xanthus, a member of the Deltaproteobacteria. One appears truncated toward the N terminus; the others are predicted lipoproteins. The function is unknown.
Probab=20.11 E-value=1.2e+02 Score=25.56 Aligned_cols=32 Identities=22% Similarity=0.211 Sum_probs=26.0
Q ss_pred HHHHHHHHHhcCCCCCCceeeecccccccccc
Q 026488 78 MSVVLERFAAIGIDAPGLVALLGSHSVGRTHC 109 (238)
Q Consensus 78 ~~~l~~~F~~~Gl~~~elVaL~GaHtiG~~~~ 109 (238)
..+|...|+++|+++.|.+.++..|.-=+.|.
T Consensus 107 a~~la~wF~~~Gi~IHd~ti~Ip~~vH~rIH~ 138 (188)
T PF09533_consen 107 AEELAEWFERRGIDIHDYTIPIPRDVHRRIHG 138 (188)
T ss_pred cHHHHHHHHHcCCChhheeEecCHHHHHHhhC
Confidence 46799999999999999999998765445543
Done!