Your job contains 1 sequence.
>026489
MIPPLTPSTALSSRRSKNSIRRCSHTSIYLDGTPQGVMLKNPICTSIKLYLMDINESPVY
VLLNPSINPAQKDLPVTIFESELHVIEGIPQLIFVRSSYTIETVEAERISVDHVAHLKPS
DGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENSLLRQVSSLLRRLP
AIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDKFNTAYDRHSRRGGRTAFI
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 026489
(238 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2131493 - symbol:CSN6B "AT4G26430" species:370... 765 6.3e-76 1
TAIR|locus:2177601 - symbol:CSN6A "AT5G56280" species:370... 754 9.3e-75 1
DICTYBASE|DDB_G0293180 - symbol:csn6 "Mov34/MPN/PAD-1 fam... 370 4.6e-34 1
UNIPROTKB|A6QQ21 - symbol:COPS6 "COP9 signalosome complex... 345 2.0e-31 1
UNIPROTKB|F1MG10 - symbol:COPS6 "COP9 signalosome complex... 345 2.0e-31 1
UNIPROTKB|E7EM64 - symbol:COPS6 "COP9 signalosome complex... 345 2.0e-31 1
UNIPROTKB|Q7L5N1 - symbol:COPS6 "COP9 signalosome complex... 345 2.0e-31 1
UNIPROTKB|A7TX81 - symbol:COPS6 "COP9 signalosome complex... 345 2.0e-31 1
MGI|MGI:1349439 - symbol:Cops6 "COP9 (constitutive photom... 345 2.0e-31 1
RGD|1309919 - symbol:Cops6 "COP9 signalosome subunit 6" s... 345 2.0e-31 1
ZFIN|ZDB-GENE-050417-289 - symbol:cops6 "COP9 constitutiv... 340 6.9e-31 1
FB|FBgn0028837 - symbol:CSN6 "COP9 complex homolog subuni... 302 7.3e-27 1
TAIR|locus:2166449 - symbol:RPN8A "AT5G05780" species:370... 132 1.4e-06 1
UNIPROTKB|B4DXI8 - symbol:PSMD7 "26S proteasome non-ATPas... 125 5.3e-06 1
TAIR|locus:2074653 - symbol:MEE34 "AT3G11270" species:370... 127 5.5e-06 1
UNIPROTKB|P51665 - symbol:PSMD7 "26S proteasome non-ATPas... 125 1.1e-05 1
UNIPROTKB|Q3ZBD0 - symbol:PSMD7 "26S proteasome non-ATPas... 124 1.4e-05 1
ZFIN|ZDB-GENE-030131-5541 - symbol:psmd7 "proteasome (pro... 124 1.4e-05 1
MGI|MGI:1351511 - symbol:Psmd7 "proteasome (prosome, macr... 122 2.4e-05 1
DICTYBASE|DDB_G0279633 - symbol:psmD7 "26S proteasome non... 122 2.4e-05 1
RGD|1306902 - symbol:Psmd7 "proteasome (prosome, macropai... 121 3.1e-05 1
FB|FBgn0002787 - symbol:Rpn8 "Regulatory particle non-ATP... 121 3.5e-05 1
>TAIR|locus:2131493 [details] [associations]
symbol:CSN6B "AT4G26430" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005576
"extracellular region" evidence=ISM] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=ISS]
[GO:0007275 "multicellular organismal development" evidence=ISS]
[GO:0010387 "signalosome assembly" evidence=IMP] [GO:0009640
"photomorphogenesis" evidence=RCA] [GO:0010388 "cullin
deneddylation" evidence=RCA] [GO:0000338 "protein deneddylation"
evidence=TAS] [GO:0008180 "signalosome" evidence=IPI]
InterPro:IPR000555 Pfam:PF01398 SMART:SM00232 GO:GO:0007275
GO:GO:0005737 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0009585
EMBL:AL161565 EMBL:AL022223 GO:GO:0008180 eggNOG:COG1310
GO:GO:0000338 GO:GO:0010387 HOGENOM:HOG000253002 KO:K12179
ProtClustDB:CLSN2689622 InterPro:IPR024969 Pfam:PF13012
EMBL:AF434762 EMBL:AF395064 EMBL:AY080638 EMBL:BT002345
EMBL:AY087556 IPI:IPI00531332 PIR:T05061 RefSeq:NP_567746.1
UniGene:At.26288 UniGene:At.28451 UniGene:At.75239
ProteinModelPortal:Q8W1P0 SMR:Q8W1P0 IntAct:Q8W1P0 STRING:Q8W1P0
PaxDb:Q8W1P0 PRIDE:Q8W1P0 EnsemblPlants:AT4G26430.1 GeneID:828749
KEGG:ath:AT4G26430 TAIR:At4g26430 InParanoid:Q8W1P0 OMA:AMITNCT
PhylomeDB:Q8W1P0 Genevestigator:Q8W1P0 GermOnline:AT4G26430
Uniprot:Q8W1P0
Length = 317
Score = 765 (274.4 bits), Expect = 6.3e-76, P = 6.3e-76
Identities = 148/188 (78%), Positives = 163/188 (86%)
Query: 51 LMDINESPVYVLLNPSINPAQKDLPVTIFESELHVIEGIPQLIFVRSSYTIETVEAERIS 110
LMDINESPVYVLLNP+IN AQKDLPVTI+ESE HVI+GIPQ IFV +SYTIETVEAERIS
Sbjct: 130 LMDINESPVYVLLNPAINHAQKDLPVTIYESEFHVIDGIPQSIFVHTSYTIETVEAERIS 189
Query: 111 VDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENXXXX 170
VDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVL+ ++VAMQKG+ PCEN
Sbjct: 190 VDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLYQHIVAMQKGDKPCENSVLR 249
Query: 171 XXXXXXXXXPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDKFNTAYDRHSR 230
PA ESEKF ++FLMEYND LL++YLAM TNC S MNE+VDKFNTAYD+HSR
Sbjct: 250 QVSSLLRSLPAAESEKFNENFLMEYNDKLLMSYLAMITNCTSNMNEVVDKFNTAYDKHSR 309
Query: 231 RGGRTAFI 238
RGGRTAF+
Sbjct: 310 RGGRTAFM 317
>TAIR|locus:2177601 [details] [associations]
symbol:CSN6A "AT5G56280" species:3702 "Arabidopsis
thaliana" [GO:0005634 "nucleus" evidence=TAS] [GO:0030163 "protein
catabolic process" evidence=TAS] [GO:0008180 "signalosome"
evidence=TAS;IPI] [GO:0009640 "photomorphogenesis"
evidence=RCA;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=IMP] [GO:0007275 "multicellular organismal development"
evidence=IMP] [GO:0010387 "signalosome assembly" evidence=IMP]
[GO:0009165 "nucleotide biosynthetic process" evidence=RCA]
[GO:0010388 "cullin deneddylation" evidence=RCA] [GO:0043161
"proteasomal ubiquitin-dependent protein catabolic process"
evidence=RCA] [GO:0043248 "proteasome assembly" evidence=RCA]
[GO:0051788 "response to misfolded protein" evidence=RCA]
InterPro:IPR000555 Pfam:PF01398 SMART:SM00232 GO:GO:0007275
GO:GO:0005737 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006511
GO:GO:0009585 GO:GO:0008180 eggNOG:COG1310 GO:GO:0010387
EMBL:AY048692 EMBL:AF395063 EMBL:AB026656 EMBL:BT004034
IPI:IPI00519357 RefSeq:NP_568839.1 UniGene:At.20191
ProteinModelPortal:Q8W206 SMR:Q8W206 IntAct:Q8W206 STRING:Q8W206
PaxDb:Q8W206 PRIDE:Q8W206 EnsemblPlants:AT5G56280.1 GeneID:835727
KEGG:ath:AT5G56280 TAIR:At5g56280 HOGENOM:HOG000253002
InParanoid:Q8W206 KO:K12179 OMA:IGKQKGR PhylomeDB:Q8W206
ProtClustDB:CLSN2689622 Genevestigator:Q8W206 GermOnline:AT5G56280
InterPro:IPR024969 Pfam:PF13012 Uniprot:Q8W206
Length = 317
Score = 754 (270.5 bits), Expect = 9.3e-75, P = 9.3e-75
Identities = 147/188 (78%), Positives = 162/188 (86%)
Query: 51 LMDINESPVYVLLNPSINPAQKDLPVTIFESELHVIEGIPQLIFVRSSYTIETVEAERIS 110
LMDINESPVYVLLNP+IN QKDLPVTI+ESELHVI+GIPQLIF +SYTIETVEAERIS
Sbjct: 130 LMDINESPVYVLLNPAINHTQKDLPVTIYESELHVIDGIPQLIFAHTSYTIETVEAERIS 189
Query: 111 VDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENXXXX 170
VDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVL+ L AMQKG+ C+N
Sbjct: 190 VDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLYQNLAAMQKGDKSCDNSVLR 249
Query: 171 XXXXXXXXXPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDKFNTAYDRHSR 230
PA+ESE+FQD+FLMEYND LLI YLAM TNC+S MNE+VDKFNTAYDR++R
Sbjct: 250 QVSSLLRRLPAMESERFQDNFLMEYNDKLLITYLAMITNCSSNMNEMVDKFNTAYDRNTR 309
Query: 231 RGGRTAFI 238
RGGRTAF+
Sbjct: 310 RGGRTAFM 317
>DICTYBASE|DDB_G0293180 [details] [associations]
symbol:csn6 "Mov34/MPN/PAD-1 family protein"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IEA;IDA] [GO:0008180 "signalosome"
evidence=IEA;ISS;IPI] [GO:0005515 "protein binding" evidence=IPI]
[GO:0031410 "cytoplasmic vesicle" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000555
Pfam:PF01398 SMART:SM00232 dictyBase:DDB_G0293180 GO:GO:0045335
GenomeReviews:CM000155_GR GO:GO:0008180 eggNOG:COG1310
EMBL:AAFI02000199 KO:K12179 OMA:IGKQKGR InterPro:IPR024969
Pfam:PF13012 EMBL:DQ309434 RefSeq:XP_629327.1
ProteinModelPortal:Q54C92 STRING:Q54C92 PRIDE:Q54C92
EnsemblProtists:DDB0233105 GeneID:8629051 KEGG:ddi:DDB_G0293180
ProtClustDB:CLSZ2429325 Uniprot:Q54C92
Length = 309
Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
Identities = 72/177 (40%), Positives = 112/177 (63%)
Query: 55 NESPVYVLLNPSINPAQKDLPVTIFESELHVIEGIPQLIFVRSSYTIETVEAERISVDHV 114
NESP+Y++L+ +P KDLPV I+ESELH++ P IFV++ Y I+T EAERI V+H+
Sbjct: 132 NESPLYLMLDTD-SPKSKDLPVIIYESELHIVNDEPTTIFVKTPYKIQTGEAERIGVNHI 190
Query: 115 AHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENXXXXXXXX 174
A + PS GS + L +HL +H+AI MLN R++ L YL A+++ +P E
Sbjct: 191 AKVTPS--GSEGSGLTSHLFTMHNAISMLNIRVKALSDYLQAVKEKRLPYEQNILRKASS 248
Query: 175 XXXXXPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDKFNTAYDRHSRR 231
P I++ F+ +L EYND LL+ YLA T ++++N+ +DK+ + ++ S+R
Sbjct: 249 LCNQLPTIDTHDFKKSYLQEYNDVLLVTYLASITKTSASLNDTIDKYLVSNEKQSKR 305
>UNIPROTKB|A6QQ21 [details] [associations]
symbol:COPS6 "COP9 signalosome complex subunit 6"
species:9913 "Bos taurus" [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0008180 "signalosome" evidence=IEA] InterPro:IPR000555
Pfam:PF01398 SMART:SM00232 GO:GO:0005737 GO:GO:0008180
eggNOG:COG1310 HOGENOM:HOG000253002 KO:K12179 InterPro:IPR024969
Pfam:PF13012 EMBL:BC149601 IPI:IPI00867272 RefSeq:NP_001095433.1
UniGene:Bt.52796 ProteinModelPortal:A6QQ21 STRING:A6QQ21
PRIDE:A6QQ21 GeneID:512756 KEGG:bta:512756 CTD:10980
HOVERGEN:HBG107770 InParanoid:A6QQ21 OrthoDB:EOG4JDH76
NextBio:20870547 Uniprot:A6QQ21
Length = 324
Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
Identities = 71/175 (40%), Positives = 105/175 (60%)
Query: 53 DINESPVYVLLNPSINPAQKDLPVTIFESELHVIEGIPQLIFVRSSYTIETVEAERISVD 112
+I ESP+++ LNP DLPV++FES + +I G ++F +YT+ T EAERI VD
Sbjct: 141 EIIESPLFLKLNPMTK--HTDLPVSVFESVIDIINGEATMLFAELTYTLATEEAERIGVD 198
Query: 113 HVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENXXXXXX 172
HVA + + G +T +A HL HSAIKML+SR++++ Y+ A + GE+P +
Sbjct: 199 HVARMTATGSGENST-VAEHLIAQHSAIKMLHSRVKLILEYVKASEAGEVPFNHEILREA 257
Query: 173 XXXXXXXPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDKFNTAYDR 227
P + ++KF+ DF + ND L+AYL T +TMN+ V+KFN YDR
Sbjct: 258 YALCHCLPVLSTDKFKTDFYDQCNDVGLMAYLGTITKTCNTMNQFVNKFNVLYDR 312
>UNIPROTKB|F1MG10 [details] [associations]
symbol:COPS6 "COP9 signalosome complex subunit 6"
species:9913 "Bos taurus" [GO:0010388 "cullin deneddylation"
evidence=IEA] [GO:0008180 "signalosome" evidence=IEA]
InterPro:IPR000555 Pfam:PF01398 SMART:SM00232 GO:GO:0008180
GO:GO:0010388 OMA:IGKQKGR InterPro:IPR024969 Pfam:PF13012
IPI:IPI00867272 UniGene:Bt.52796 GeneTree:ENSGT00530000063075
EMBL:DAAA02058286 PRIDE:F1MG10 Ensembl:ENSBTAT00000003725
Uniprot:F1MG10
Length = 324
Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
Identities = 71/175 (40%), Positives = 105/175 (60%)
Query: 53 DINESPVYVLLNPSINPAQKDLPVTIFESELHVIEGIPQLIFVRSSYTIETVEAERISVD 112
+I ESP+++ LNP DLPV++FES + +I G ++F +YT+ T EAERI VD
Sbjct: 141 EIIESPLFLKLNPMTK--HTDLPVSVFESVIDIINGEATMLFAELTYTLATEEAERIGVD 198
Query: 113 HVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENXXXXXX 172
HVA + + G +T +A HL HSAIKML+SR++++ Y+ A + GE+P +
Sbjct: 199 HVARMTATGSGENST-VAEHLIAQHSAIKMLHSRVKLILEYVKASEAGEVPFNHEILREA 257
Query: 173 XXXXXXXPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDKFNTAYDR 227
P + ++KF+ DF + ND L+AYL T +TMN+ V+KFN YDR
Sbjct: 258 YALCHCLPVLSTDKFKTDFYDQCNDVGLMAYLGTITKTCNTMNQFVNKFNVLYDR 312
>UNIPROTKB|E7EM64 [details] [associations]
symbol:COPS6 "COP9 signalosome complex subunit 6"
species:9606 "Homo sapiens" [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000555
Pfam:PF01398 SMART:SM00232 GO:GO:0005634 InterPro:IPR024969
Pfam:PF13012 HGNC:HGNC:21749 ChiTaRS:COPS6 EMBL:AC073842
IPI:IPI00924791 ProteinModelPortal:E7EM64 SMR:E7EM64
Ensembl:ENST00000418625 ArrayExpress:E7EM64 Bgee:E7EM64
Uniprot:E7EM64
Length = 326
Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
Identities = 71/175 (40%), Positives = 105/175 (60%)
Query: 53 DINESPVYVLLNPSINPAQKDLPVTIFESELHVIEGIPQLIFVRSSYTIETVEAERISVD 112
+I ESP+++ LNP DLPV++FES + +I G ++F +YT+ T EAERI VD
Sbjct: 143 EIIESPLFLKLNPMTK--HTDLPVSVFESVIDIINGEATMLFAELTYTLATEEAERIGVD 200
Query: 113 HVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENXXXXXX 172
HVA + + G +T +A HL HSAIKML+SR++++ Y+ A + GE+P +
Sbjct: 201 HVARMTATGSGENST-VAEHLIAQHSAIKMLHSRVKLILEYVKASEAGEVPFNHEILREA 259
Query: 173 XXXXXXXPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDKFNTAYDR 227
P + ++KF+ DF + ND L+AYL T +TMN+ V+KFN YDR
Sbjct: 260 YALCHCLPVLSTDKFKTDFYDQCNDVGLMAYLGTITKTCNTMNQFVNKFNVLYDR 314
>UNIPROTKB|Q7L5N1 [details] [associations]
symbol:COPS6 "COP9 signalosome complex subunit 6"
species:9606 "Homo sapiens" [GO:0019048 "virus-host interaction"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0008180 "signalosome"
evidence=IDA] [GO:0010388 "cullin deneddylation" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000555 Pfam:PF01398 SMART:SM00232
GO:GO:0005737 GO:GO:0019048 EMBL:CH236956 EMBL:CH471091
GO:GO:0008180 eggNOG:COG1310 GO:GO:0010388 HOGENOM:HOG000253002
KO:K12179 OMA:IGKQKGR InterPro:IPR024969 Pfam:PF13012 CTD:10980
HOVERGEN:HBG107770 OrthoDB:EOG4JDH76 MEROPS:M67.972 EMBL:BC002520
EMBL:U70735 IPI:IPI00163230 RefSeq:NP_006824.2 UniGene:Hs.15591
ProteinModelPortal:Q7L5N1 SMR:Q7L5N1 DIP:DIP-32655N IntAct:Q7L5N1
MINT:MINT-5005311 STRING:Q7L5N1 PhosphoSite:Q7L5N1 DMDM:55976470
PaxDb:Q7L5N1 PeptideAtlas:Q7L5N1 PRIDE:Q7L5N1 DNASU:10980
Ensembl:ENST00000303904 GeneID:10980 KEGG:hsa:10980 UCSC:uc003usu.3
GeneCards:GC07P099686 HGNC:HGNC:21749 HPA:HPA044315 MIM:614729
neXtProt:NX_Q7L5N1 PharmGKB:PA134919933 InParanoid:Q7L5N1
PhylomeDB:Q7L5N1 ChiTaRS:COPS6 GenomeRNAi:10980 NextBio:41718
ArrayExpress:Q7L5N1 Bgee:Q7L5N1 CleanEx:HS_COPS6
Genevestigator:Q7L5N1 GermOnline:ENSG00000168090 Uniprot:Q7L5N1
Length = 327
Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
Identities = 71/175 (40%), Positives = 105/175 (60%)
Query: 53 DINESPVYVLLNPSINPAQKDLPVTIFESELHVIEGIPQLIFVRSSYTIETVEAERISVD 112
+I ESP+++ LNP DLPV++FES + +I G ++F +YT+ T EAERI VD
Sbjct: 144 EIIESPLFLKLNPMTK--HTDLPVSVFESVIDIINGEATMLFAELTYTLATEEAERIGVD 201
Query: 113 HVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENXXXXXX 172
HVA + + G +T +A HL HSAIKML+SR++++ Y+ A + GE+P +
Sbjct: 202 HVARMTATGSGENST-VAEHLIAQHSAIKMLHSRVKLILEYVKASEAGEVPFNHEILREA 260
Query: 173 XXXXXXXPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDKFNTAYDR 227
P + ++KF+ DF + ND L+AYL T +TMN+ V+KFN YDR
Sbjct: 261 YALCHCLPVLSTDKFKTDFYDQCNDVGLMAYLGTITKTCNTMNQFVNKFNVLYDR 315
>UNIPROTKB|A7TX81 [details] [associations]
symbol:COPS6 "COP9 signalosome complex subunit 6"
species:9823 "Sus scrofa" [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0008180 "signalosome" evidence=IEA] InterPro:IPR000555
Pfam:PF01398 SMART:SM00232 GO:GO:0005737 GO:GO:0008180 KO:K12179
InterPro:IPR024969 Pfam:PF13012 CTD:10980 HOVERGEN:HBG107770
EMBL:EF468513 RefSeq:NP_001098769.1 UniGene:Ssc.8359
ProteinModelPortal:A7TX81 GeneID:100125954 KEGG:ssc:100125954
Uniprot:A7TX81
Length = 323
Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
Identities = 71/175 (40%), Positives = 105/175 (60%)
Query: 53 DINESPVYVLLNPSINPAQKDLPVTIFESELHVIEGIPQLIFVRSSYTIETVEAERISVD 112
+I ESP+++ LNP DLPV++FES + +I G ++F +YT+ T EAERI VD
Sbjct: 140 EIIESPLFLKLNPMTK--HTDLPVSVFESVIDIINGEATMLFAELTYTLATEEAERIGVD 197
Query: 113 HVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENXXXXXX 172
HVA + + G +T +A HL HSAIKML+SR++++ Y+ A + GE+P +
Sbjct: 198 HVARMTATGSGENST-VAEHLIAQHSAIKMLHSRVKLILEYVKASEAGEVPFNHEILREA 256
Query: 173 XXXXXXXPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDKFNTAYDR 227
P + ++KF+ DF + ND L+AYL T +TMN+ V+KFN YDR
Sbjct: 257 YALCHCLPVLSTDKFKTDFYDQCNDVGLMAYLGTITKTCNTMNQFVNKFNVLYDR 311
>MGI|MGI:1349439 [details] [associations]
symbol:Cops6 "COP9 (constitutive photomorphogenic) homolog,
subunit 6 (Arabidopsis thaliana)" species:10090 "Mus musculus"
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0008180
"signalosome" evidence=ISO;IDA] [GO:0010388 "cullin deneddylation"
evidence=ISO] InterPro:IPR000555 Pfam:PF01398 SMART:SM00232
MGI:MGI:1349439 GO:GO:0005737 GO:GO:0008180 eggNOG:COG1310
GO:GO:0010388 HOGENOM:HOG000253002 KO:K12179 OMA:IGKQKGR
InterPro:IPR024969 Pfam:PF13012 CTD:10980 HOVERGEN:HBG107770
OrthoDB:EOG4JDH76 MEROPS:M67.972 EMBL:AF071315 EMBL:BC004664
EMBL:BC014286 IPI:IPI00131873 RefSeq:NP_036132.1 UniGene:Mm.3981
ProteinModelPortal:O88545 SMR:O88545 STRING:O88545
PhosphoSite:O88545 PaxDb:O88545 PRIDE:O88545
Ensembl:ENSMUST00000019638 GeneID:26893 KEGG:mmu:26893
InParanoid:O88545 NextBio:304723 Bgee:O88545 Genevestigator:O88545
GermOnline:ENSMUSG00000019494 Uniprot:O88545
Length = 324
Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
Identities = 71/175 (40%), Positives = 105/175 (60%)
Query: 53 DINESPVYVLLNPSINPAQKDLPVTIFESELHVIEGIPQLIFVRSSYTIETVEAERISVD 112
+I ESP+++ LNP DLPV++FES + +I G ++F +YT+ T EAERI VD
Sbjct: 141 EIIESPLFLKLNPMTK--HTDLPVSVFESVIDIINGEATMLFAELTYTLATEEAERIGVD 198
Query: 113 HVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENXXXXXX 172
HVA + + G +T +A HL HSAIKML+SR++++ Y+ A + GE+P +
Sbjct: 199 HVARMTATGSGENST-VAEHLIAQHSAIKMLHSRVKLILEYVKASEAGEVPFNHEILREA 257
Query: 173 XXXXXXXPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDKFNTAYDR 227
P + ++KF+ DF + ND L+AYL T +TMN+ V+KFN YDR
Sbjct: 258 YALCHCLPVLSTDKFKTDFYDQCNDVGLMAYLGTITKTCNTMNQFVNKFNVLYDR 312
>RGD|1309919 [details] [associations]
symbol:Cops6 "COP9 signalosome subunit 6" species:10116 "Rattus
norvegicus" [GO:0005634 "nucleus" evidence=ISO] [GO:0008180
"signalosome" evidence=IEA;ISO] [GO:0010388 "cullin deneddylation"
evidence=IEA;ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000555 Pfam:PF01398 SMART:SM00232 RGD:1309919
GO:GO:0008180 GO:GO:0010388 KO:K12179 InterPro:IPR024969
Pfam:PF13012 CTD:10980 OrthoDB:EOG4JDH76
GeneTree:ENSGT00530000063075 EMBL:CH474107 IPI:IPI00870712
RefSeq:NP_001100599.1 UniGene:Rn.35643 Ensembl:ENSRNOT00000001820
GeneID:304343 KEGG:rno:304343 UCSC:RGD:1309919 NextBio:652918
Uniprot:D3ZI16
Length = 344
Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
Identities = 71/175 (40%), Positives = 105/175 (60%)
Query: 53 DINESPVYVLLNPSINPAQKDLPVTIFESELHVIEGIPQLIFVRSSYTIETVEAERISVD 112
+I ESP+++ LNP DLPV++FES + +I G ++F +YT+ T EAERI VD
Sbjct: 161 EIIESPLFLKLNPMTK--HTDLPVSVFESVIDIINGEATMLFAELTYTLATEEAERIGVD 218
Query: 113 HVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENXXXXXX 172
HVA + + G +T +A HL HSAIKML+SR++++ Y+ A + GE+P +
Sbjct: 219 HVARMTATGSGENST-VAEHLIAQHSAIKMLHSRVKLILEYVKASEAGEVPFNHEILREA 277
Query: 173 XXXXXXXPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDKFNTAYDR 227
P + ++KF+ DF + ND L+AYL T +TMN+ V+KFN YDR
Sbjct: 278 YALCHCLPVLSTDKFKTDFYDQCNDVGLMAYLGTITKTCNTMNQFVNKFNVLYDR 332
>ZFIN|ZDB-GENE-050417-289 [details] [associations]
symbol:cops6 "COP9 constitutive photomorphogenic
homolog subunit 6 (Arabidopsis)" species:7955 "Danio rerio"
[GO:0005575 "cellular_component" evidence=ND] [GO:0003674
"molecular_function" evidence=ND] [GO:0060026 "convergent
extension" evidence=IMP] [GO:0007420 "brain development"
evidence=IMP] [GO:0009953 "dorsal/ventral pattern formation"
evidence=IMP] [GO:0021551 "central nervous system morphogenesis"
evidence=IMP] InterPro:IPR000555 Pfam:PF01398 SMART:SM00232
ZFIN:ZDB-GENE-050417-289 GO:GO:0007420 GO:GO:0009953 GO:GO:0060026
GO:GO:0021551 KO:K12179 InterPro:IPR024969 Pfam:PF13012 CTD:10980
HOVERGEN:HBG107770 EMBL:BC093188 IPI:IPI00570094
RefSeq:NP_001017768.1 UniGene:Dr.42675 ProteinModelPortal:Q567F8
PRIDE:Q567F8 GeneID:550465 KEGG:dre:550465 NextBio:20879709
Uniprot:Q567F8
Length = 297
Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
Identities = 71/175 (40%), Positives = 104/175 (59%)
Query: 53 DINESPVYVLLNPSINPAQKDLPVTIFESELHVIEGIPQLIFVRSSYTIETVEAERISVD 112
+I ESP+++ LNP DLPV++FES + +I G ++F YT+ T EAERI VD
Sbjct: 114 EIIESPLFLKLNPMTK--HTDLPVSVFESVIDIISGEATMLFAELPYTLATEEAERIGVD 171
Query: 113 HVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENXXXXXX 172
HVA + + G +T +A HL HSAIKML+SR++V+ Y+ A+Q GE+P +
Sbjct: 172 HVARMTATGTGENST-VAEHLIAQHSAIKMLHSRVKVILEYVKAVQAGEVPFNHEILREA 230
Query: 173 XXXXXXXPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDKFNTAYDR 227
P + + KF+ DF + ND L+AYL T ++MN+ ++KFN YDR
Sbjct: 231 NALCHRLPVLNTLKFKTDFYDQCNDVGLMAYLGTITKTCNSMNQFINKFNVLYDR 285
>FB|FBgn0028837 [details] [associations]
symbol:CSN6 "COP9 complex homolog subunit 6" species:7227
"Drosophila melanogaster" [GO:0008180 "signalosome" evidence=ISS]
[GO:0050821 "protein stabilization" evidence=IMP] [GO:0007095
"mitotic G2 DNA damage checkpoint" evidence=IGI] [GO:0046331
"lateral inhibition" evidence=IMP] InterPro:IPR000555 Pfam:PF01398
SMART:SM00232 EMBL:AE014297 GO:GO:0007275 GO:GO:0005737
GO:GO:0007095 GO:GO:0050821 GO:GO:0048477 GO:GO:0046331
GO:GO:0008180 eggNOG:COG1310 GO:GO:0000338 GO:GO:0019781 KO:K12179
OMA:IGKQKGR InterPro:IPR024969 Pfam:PF13012
GeneTree:ENSGT00530000063075 EMBL:AY070607 RefSeq:NP_524451.1
UniGene:Dm.2377 PDB:4E0Q PDBsum:4E0Q ProteinModelPortal:Q9VCY3
SMR:Q9VCY3 IntAct:Q9VCY3 MINT:MINT-991251 STRING:Q9VCY3
MEROPS:M67.972 PaxDb:Q9VCY3 PRIDE:Q9VCY3 EnsemblMetazoa:FBtr0084265
GeneID:42661 KEGG:dme:Dmel_CG6932 CTD:42661 FlyBase:FBgn0028837
InParanoid:Q9VCY3 OrthoDB:EOG4KSN1G PhylomeDB:Q9VCY3
GenomeRNAi:42661 NextBio:829940 Bgee:Q9VCY3 GermOnline:CG6932
Uniprot:Q9VCY3
Length = 341
Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
Identities = 66/189 (34%), Positives = 106/189 (56%)
Query: 41 NPICTSIKLY--LMDINESPVYVLLNPSINPAQKDLPVTIFESELHVIEGIPQLIFVRSS 98
NP IK+ + INE P+ + LNP ++ + LP+ +FES + +++G ++FV +
Sbjct: 143 NPTADDIKIQRQIAAINECPIMLQLNP-LSRSVDHLPLKLFESLIDLVDGEATMLFVPLT 201
Query: 99 YTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQ 158
YT+ T EAERI VDHVA + ++ G + +A HL SAIKMLN+RI+++ Y+ ++
Sbjct: 202 YTLATEEAERIGVDHVARMTSNESGEKSV-VAEHLVAQDSAIKMLNTRIKIVLQYIRDVE 260
Query: 159 KGEIPCENXXXXXXXXXXXXXPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELV 218
G++ P ++ FQ++F + ND LI+YL T + M+ V
Sbjct: 261 AGKLRANQEILREAYALCHRLPVMQVPAFQEEFYTQCNDVGLISYLGTLTKGCNDMHHFV 320
Query: 219 DKFNTAYDR 227
+KFN YDR
Sbjct: 321 NKFNMLYDR 329
>TAIR|locus:2166449 [details] [associations]
symbol:RPN8A "AT5G05780" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0008541 "proteasome regulatory
particle, lid subcomplex" evidence=ISS] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=TAS]
[GO:0009965 "leaf morphogenesis" evidence=IMP] [GO:0000502
"proteasome complex" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0042023 "DNA endoreduplication" evidence=RCA]
[GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
process" evidence=RCA] [GO:0043248 "proteasome assembly"
evidence=RCA] [GO:0051510 "regulation of unidimensional cell
growth" evidence=RCA] [GO:0051788 "response to misfolded protein"
evidence=RCA] [GO:0080129 "proteasome core complex assembly"
evidence=RCA] InterPro:IPR000555 Pfam:PF01398 SMART:SM00232
GO:GO:0005829 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000502
GO:GO:0009965 eggNOG:COG1310 EMBL:AB005237 InterPro:IPR024969
Pfam:PF13012 KO:K03038 EMBL:U54560 EMBL:AF378878 EMBL:BT002610
EMBL:AY087393 IPI:IPI00538047 RefSeq:NP_196197.1 UniGene:At.20537
UniGene:At.67787 ProteinModelPortal:O24412 SMR:O24412 IntAct:O24412
STRING:O24412 PaxDb:O24412 PRIDE:O24412 EnsemblPlants:AT5G05780.1
GeneID:830463 KEGG:ath:AT5G05780 TAIR:At5g05780
HOGENOM:HOG000209236 InParanoid:O24412 OMA:RSIIALH PhylomeDB:O24412
ProtClustDB:PLN03246 Genevestigator:O24412 GermOnline:AT5G05780
Uniprot:O24412
Length = 308
Score = 132 (51.5 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 40/167 (23%), Positives = 78/167 (46%)
Query: 57 SPVYVLLNPSINPAQKDLPVTIFESELHVIEGIPQL---IFVRSSYTIETVEAERISVDH 113
+PV V+++ + P + +P + + V E Q +FV S I E E I V+H
Sbjct: 125 NPVLVIID--VQPKELGIPTKAYYAVEEVKENATQKSQKVFVHVSTEIAAHEVEEIGVEH 182
Query: 114 VAH-LKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENXXXXXX 172
+ +K + + AT++ A LT A+K L++R+R + YL + +G++P +
Sbjct: 183 LLRDVKDTTISTLATEVTAKLT----ALKGLDARLREIRSYLDLVIEGKLPLNHEILYHL 238
Query: 173 XXXXXXXPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVD 219
P + + F ++ ND +L+ YL+ ++ L++
Sbjct: 239 QDVFNLLPNLNVNELVKAFSVKTNDMMLVIYLSSLIRSVIALHNLIN 285
>UNIPROTKB|B4DXI8 [details] [associations]
symbol:PSMD7 "26S proteasome non-ATPase regulatory subunit
7" species:9606 "Homo sapiens" [GO:0000502 "proteasome complex"
evidence=IEA] InterPro:IPR000555 Pfam:PF01398 GO:GO:0000502
InterPro:IPR024969 Pfam:PF13012 HOVERGEN:HBG035951
UniGene:Hs.440604 HGNC:HGNC:9565 ChiTaRS:PSMD7 EMBL:AC009120
EMBL:AK301996 IPI:IPI01009629 SMR:B4DXI8 STRING:B4DXI8
Ensembl:ENST00000540379 Uniprot:B4DXI8
Length = 247
Score = 125 (49.1 bits), Expect = 5.3e-06, P = 5.3e-06
Identities = 47/199 (23%), Positives = 85/199 (42%)
Query: 45 TSIKLYLMDI--NE-----SPVYVLLNPSINPAQKDLPVTIFES--ELHVIEGIP-QLIF 94
T KL+ DI NE P VL+ + P LP + S E+H +G P F
Sbjct: 20 TGPKLHKNDIAINELMKRYCPNSVLVIIDVKPKDLGLPTEAYISVEEVHD-DGTPTSKTF 78
Query: 95 VRSSYTIETVEAERISVDHVAH-LKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHY 153
+ I EAE + V+H+ +K + G+ + ++ + G+ K LNS++ + Y
Sbjct: 79 EHVTSEIGAEEAEEVGVEHLLRDIKDTTVGTLSQRITNQVHGL----KGLNSKLLDIRSY 134
Query: 154 LVAMQKGEIPCENXXXXXXXXXXXXXPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCAST 213
L + G++P + P + ++F F ++ ND +++ YLA
Sbjct: 135 LEKVATGKLPINHQIIYQLQDVFNLLPDVSLQEFVKAFYLKTNDQMVVVYLASLIRSVVA 194
Query: 214 MNELVDKFNTAYDRHSRRG 232
++ L++ D + G
Sbjct: 195 LHNLINNKIANRDAEKKEG 213
>TAIR|locus:2074653 [details] [associations]
symbol:MEE34 "AT3G11270" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0008541 "proteasome regulatory
particle, lid subcomplex" evidence=ISS] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=TAS]
[GO:0005634 "nucleus" evidence=TAS] [GO:0030163 "protein catabolic
process" evidence=TAS] [GO:0009793 "embryo development ending in
seed dormancy" evidence=IMP] [GO:0000502 "proteasome complex"
evidence=IDA] [GO:0006635 "fatty acid beta-oxidation" evidence=RCA]
[GO:0009407 "toxin catabolic process" evidence=RCA] [GO:0010162
"seed dormancy process" evidence=RCA] [GO:0010564 "regulation of
cell cycle process" evidence=RCA] [GO:0042023 "DNA
endoreduplication" evidence=RCA] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process" evidence=RCA]
[GO:0043248 "proteasome assembly" evidence=RCA] [GO:0048366 "leaf
development" evidence=RCA] [GO:0048825 "cotyledon development"
evidence=RCA] [GO:0051510 "regulation of unidimensional cell
growth" evidence=RCA] [GO:0051788 "response to misfolded protein"
evidence=RCA] [GO:0080129 "proteasome core complex assembly"
evidence=RCA] InterPro:IPR000555 Pfam:PF01398 SMART:SM00232
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0009793
GO:GO:0030163 GO:GO:0000502 EMBL:AC073395 InterPro:IPR024969
Pfam:PF13012 KO:K03038 HOGENOM:HOG000209236 ProtClustDB:PLN03246
MEROPS:M67.973 EMBL:AY258412 EMBL:AK228032 IPI:IPI00536063
RefSeq:NP_187736.1 UniGene:At.39785 ProteinModelPortal:Q9C774
SMR:Q9C774 IntAct:Q9C774 STRING:Q9C774 PRIDE:Q9C774 DNASU:820298
EnsemblPlants:AT3G11270.1 GeneID:820298 KEGG:ath:AT3G11270
TAIR:At3g11270 InParanoid:Q9C774 OMA:INAKEHI PhylomeDB:Q9C774
Genevestigator:Q9C774 Uniprot:Q9C774
Length = 310
Score = 127 (49.8 bits), Expect = 5.5e-06, P = 5.5e-06
Identities = 39/167 (23%), Positives = 77/167 (46%)
Query: 57 SPVYVLLNPSINPAQKDLPVTIFESELHVIEGIPQL---IFVRSSYTIETVEAERISVDH 113
+PV V+++ + P + +P + + V E Q +FV I E E I V+H
Sbjct: 125 NPVLVIID--VQPKELGIPTKAYYAVEEVKENATQKSQQVFVHVPTEIAAHEVEEIGVEH 182
Query: 114 VAH-LKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENXXXXXX 172
+ +K + + AT++ A LT A+K L++R+R + YL + +G++P +
Sbjct: 183 LLRDVKDTTISTLATEVTAKLT----ALKGLDARLREIRTYLDLVIEGKLPLNHEILYHL 238
Query: 173 XXXXXXXPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVD 219
P + + F ++ ND +L+ YL+ ++ L++
Sbjct: 239 QDVFNLLPNLNVNELVKAFAVKTNDMMLVIYLSSLIRSVIALHSLIN 285
>UNIPROTKB|P51665 [details] [associations]
symbol:PSMD7 "26S proteasome non-ATPase regulatory subunit
7" species:9606 "Homo sapiens" [GO:0005515 "protein binding"
evidence=IPI] [GO:0000502 "proteasome complex" evidence=TAS]
[GO:0005838 "proteasome regulatory particle" evidence=TAS]
[GO:0000075 "cell cycle checkpoint" evidence=TAS] [GO:0000082 "G1/S
transition of mitotic cell cycle" evidence=TAS] [GO:0000084 "S
phase of mitotic cell cycle" evidence=TAS] [GO:0000209 "protein
polyubiquitination" evidence=TAS] [GO:0000216 "M/G1 transition of
mitotic cell cycle" evidence=TAS] [GO:0000278 "mitotic cell cycle"
evidence=TAS] [GO:0002474 "antigen processing and presentation of
peptide antigen via MHC class I" evidence=TAS] [GO:0002479 "antigen
processing and presentation of exogenous peptide antigen via MHC
class I, TAP-dependent" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0005829 "cytosol" evidence=TAS] [GO:0006521
"regulation of cellular amino acid metabolic process" evidence=TAS]
[GO:0006915 "apoptotic process" evidence=TAS] [GO:0006977 "DNA
damage response, signal transduction by p53 class mediator
resulting in cell cycle arrest" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0016032 "viral reproduction"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS] [GO:0031145
"anaphase-promoting complex-dependent proteasomal
ubiquitin-dependent protein catabolic process" evidence=TAS]
[GO:0034641 "cellular nitrogen compound metabolic process"
evidence=TAS] [GO:0042590 "antigen processing and presentation of
exogenous peptide antigen via MHC class I" evidence=TAS]
[GO:0042981 "regulation of apoptotic process" evidence=TAS]
[GO:0044281 "small molecule metabolic process" evidence=TAS]
[GO:0051436 "negative regulation of ubiquitin-protein ligase
activity involved in mitotic cell cycle" evidence=TAS] [GO:0051437
"positive regulation of ubiquitin-protein ligase activity involved
in mitotic cell cycle" evidence=TAS] [GO:0051439 "regulation of
ubiquitin-protein ligase activity involved in mitotic cell cycle"
evidence=TAS] Reactome:REACT_13505 Reactome:REACT_578
Reactome:REACT_71 Reactome:REACT_21257 Reactome:REACT_6850
Reactome:REACT_111217 InterPro:IPR000555 Pfam:PF01398 SMART:SM00232
GO:GO:0005829 Reactome:REACT_111102 Reactome:REACT_116125
Reactome:REACT_6900 GO:GO:0006915 GO:GO:0010467 GO:GO:0016071
Reactome:REACT_115566 GO:GO:0005654 GO:GO:0002479 GO:GO:0016032
Reactome:REACT_21300 GO:GO:0006977 GO:GO:0042981 GO:GO:0044281
GO:GO:0000082 GO:GO:0051436 GO:GO:0000216 GO:GO:0000209
eggNOG:COG1310 GO:GO:0000084 GO:GO:0031145 GO:GO:0051437
EMBL:CH471166 GO:GO:0006521 Reactome:REACT_383 InterPro:IPR024969
Pfam:PF13012 KO:K03038 GO:GO:0005838 HOGENOM:HOG000209236
OMA:RSIIALH MEROPS:M67.973 CTD:5713 HOVERGEN:HBG035951
OrthoDB:EOG441QC3 EMBL:D50063 EMBL:BC000338 EMBL:BC012606
IPI:IPI00019927 PIR:JC4154 PIR:S65491 RefSeq:NP_002802.2
UniGene:Hs.440604 PDB:2O95 PDB:2O96 PDBsum:2O95 PDBsum:2O96
ProteinModelPortal:P51665 SMR:P51665 DIP:DIP-27572N IntAct:P51665
MINT:MINT-5002613 STRING:P51665 PhosphoSite:P51665 DMDM:20532412
PaxDb:P51665 PeptideAtlas:P51665 PRIDE:P51665 DNASU:5713
Ensembl:ENST00000219313 GeneID:5713 KEGG:hsa:5713 UCSC:uc002fcq.3
GeneCards:GC16P074330 HGNC:HGNC:9565 HPA:CAB019379 MIM:157970
neXtProt:NX_P51665 PharmGKB:PA33911 InParanoid:P51665
PhylomeDB:P51665 ChiTaRS:PSMD7 EvolutionaryTrace:P51665
GenomeRNAi:5713 NextBio:22194 ArrayExpress:P51665 Bgee:P51665
CleanEx:HS_PSMD7 Genevestigator:P51665 GermOnline:ENSG00000103035
Uniprot:P51665
Length = 324
Score = 125 (49.1 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 47/199 (23%), Positives = 85/199 (42%)
Query: 45 TSIKLYLMDI--NE-----SPVYVLLNPSINPAQKDLPVTIFES--ELHVIEGIP-QLIF 94
T KL+ DI NE P VL+ + P LP + S E+H +G P F
Sbjct: 97 TGPKLHKNDIAINELMKRYCPNSVLVIIDVKPKDLGLPTEAYISVEEVHD-DGTPTSKTF 155
Query: 95 VRSSYTIETVEAERISVDHVAH-LKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHY 153
+ I EAE + V+H+ +K + G+ + ++ + G+ K LNS++ + Y
Sbjct: 156 EHVTSEIGAEEAEEVGVEHLLRDIKDTTVGTLSQRITNQVHGL----KGLNSKLLDIRSY 211
Query: 154 LVAMQKGEIPCENXXXXXXXXXXXXXPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCAST 213
L + G++P + P + ++F F ++ ND +++ YLA
Sbjct: 212 LEKVATGKLPINHQIIYQLQDVFNLLPDVSLQEFVKAFYLKTNDQMVVVYLASLIRSVVA 271
Query: 214 MNELVDKFNTAYDRHSRRG 232
++ L++ D + G
Sbjct: 272 LHNLINNKIANRDAEKKEG 290
>UNIPROTKB|Q3ZBD0 [details] [associations]
symbol:PSMD7 "26S proteasome non-ATPase regulatory subunit
7" species:9913 "Bos taurus" [GO:0000502 "proteasome complex"
evidence=IEA] InterPro:IPR000555 Pfam:PF01398 SMART:SM00232
GO:GO:0000502 eggNOG:COG1310 InterPro:IPR024969 Pfam:PF13012
GeneTree:ENSGT00530000063075 KO:K03038 HOGENOM:HOG000209236
OMA:RSIIALH EMBL:BC103437 IPI:IPI00685826 RefSeq:NP_001029595.1
UniGene:Bt.49378 ProteinModelPortal:Q3ZBD0 SMR:Q3ZBD0 STRING:Q3ZBD0
MEROPS:M67.973 PRIDE:Q3ZBD0 Ensembl:ENSBTAT00000024515
GeneID:512456 KEGG:bta:512456 CTD:5713 HOVERGEN:HBG035951
InParanoid:Q3ZBD0 OrthoDB:EOG441QC3 NextBio:20870397 Uniprot:Q3ZBD0
Length = 322
Score = 124 (48.7 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 47/199 (23%), Positives = 85/199 (42%)
Query: 45 TSIKLYLMDI--NE-----SPVYVLLNPSINPAQKDLPVTIFES--ELHVIEGIP-QLIF 94
T KL+ DI NE P VL+ + P LP + S E+H +G P F
Sbjct: 97 TGPKLHKNDIAINELMKRYCPNSVLVIIDVKPKDLGLPTEAYISVEEVHD-DGTPTSKTF 155
Query: 95 VRSSYTIETVEAERISVDHVAH-LKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHY 153
+ I EAE + V+H+ +K + G+ + ++ + G+ K LNS++ + Y
Sbjct: 156 EHVTSEIGAEEAEEVGVEHLLRDIKDTTVGTLSQRITNQVHGL----KGLNSKLLDIRGY 211
Query: 154 LVAMQKGEIPCENXXXXXXXXXXXXXPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCAST 213
L + G++P + P + ++F F ++ ND +++ YLA
Sbjct: 212 LEKVATGKLPINHQIIYQLQDVFNLLPDVSLQEFVKAFYLKTNDQMVVVYLASLIRSVVA 271
Query: 214 MNELVDKFNTAYDRHSRRG 232
++ L++ D + G
Sbjct: 272 LHNLINNKIANRDAEKKEG 290
>ZFIN|ZDB-GENE-030131-5541 [details] [associations]
symbol:psmd7 "proteasome (prosome, macropain) 26S
subunit, non-ATPase, 7 (Mov34 homolog)" species:7955 "Danio rerio"
[GO:0021551 "central nervous system morphogenesis" evidence=IMP]
[GO:0000502 "proteasome complex" evidence=IEA] InterPro:IPR000555
Pfam:PF01398 SMART:SM00232 ZFIN:ZDB-GENE-030131-5541 GO:GO:0000502
eggNOG:COG1310 GO:GO:0021551 InterPro:IPR024969 Pfam:PF13012
GeneTree:ENSGT00530000063075 KO:K03038 HOGENOM:HOG000209236
OMA:RSIIALH MEROPS:M67.973 CTD:5713 HOVERGEN:HBG035951
OrthoDB:EOG441QC3 EMBL:BC044358 EMBL:BC066605 IPI:IPI00481317
RefSeq:NP_956083.1 UniGene:Dr.80368 SMR:Q7ZYX7 STRING:Q7ZYX7
Ensembl:ENSDART00000098229 GeneID:327330 KEGG:dre:327330
InParanoid:Q7ZYX7 NextBio:20809984 Uniprot:Q7ZYX7
Length = 327
Score = 124 (48.7 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 40/176 (22%), Positives = 76/176 (43%)
Query: 61 VLLNPSINPAQKDLPVTIFES--ELHVIEGIP-QLIFVRSSYTIETVEAERISVDHVAH- 116
VL+ + P LP + S E+H +G P F + I EAE + V+H+
Sbjct: 120 VLVIIDVKPKDLGLPTEAYISVEEVHD-DGTPTSKTFEHVTSEIGAEEAEEVGVEHLLRD 178
Query: 117 LKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENXXXXXXXXXX 176
+K + G+ + ++ + G+ K LNS++ + YL + G++P +
Sbjct: 179 IKDTTVGTLSQRITNQVHGL----KGLNSKLLDIKSYLEKVATGKLPINHQIIYQLQDVF 234
Query: 177 XXXPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDKFNTAYDRHSRRG 232
P + ++F F ++ ND +L+ YLA ++ L++ D + G
Sbjct: 235 NLLPDVNLQEFVKAFYLKTNDQMLVVYLASLIRSVVALHNLINNKIANRDAEKKEG 290
>MGI|MGI:1351511 [details] [associations]
symbol:Psmd7 "proteasome (prosome, macropain) 26S subunit,
non-ATPase, 7" species:10090 "Mus musculus" [GO:0000502 "proteasome
complex" evidence=IEA] InterPro:IPR000555 Pfam:PF01398
SMART:SM00232 MGI:MGI:1351511 GO:GO:0000502 eggNOG:COG1310
InterPro:IPR024969 Pfam:PF13012 GeneTree:ENSGT00530000063075
KO:K03038 HOGENOM:HOG000209236 OMA:RSIIALH MEROPS:M67.973 CTD:5713
HOVERGEN:HBG035951 OrthoDB:EOG441QC3 EMBL:M64641 EMBL:M64640
EMBL:M64634 EMBL:M64635 EMBL:M64636 EMBL:M64637 EMBL:M64639
EMBL:AK031013 EMBL:AK159825 IPI:IPI00114667 PIR:A40556
RefSeq:NP_034947.1 UniGene:Mm.18347 ProteinModelPortal:P26516
SMR:P26516 IntAct:P26516 STRING:P26516 PhosphoSite:P26516
PaxDb:P26516 PRIDE:P26516 Ensembl:ENSMUST00000044106 GeneID:17463
KEGG:mmu:17463 InParanoid:P26516 NextBio:292104 Bgee:P26516
Genevestigator:P26516 GermOnline:ENSMUSG00000039067 Uniprot:P26516
Length = 321
Score = 122 (48.0 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 47/199 (23%), Positives = 84/199 (42%)
Query: 45 TSIKLYLMDI--NE-----SPVYVLLNPSINPAQKDLPVTIFES--ELHVIEGIP-QLIF 94
T KL+ DI NE P VL+ + P LP + S E+H +G P F
Sbjct: 97 TGPKLHKNDIAINELMKRYCPNSVLVIIDVKPKDLGLPTEAYISVEEVHD-DGTPTSKTF 155
Query: 95 VRSSYTIETVEAERISVDHVAH-LKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHY 153
+ I EAE + V+H+ +K + G+ + ++ + G+ K LNS++ + Y
Sbjct: 156 EHVTSEIGAEEAEEVGVEHLLRDIKDTTVGTLSQRITNQVHGL----KGLNSKLLDIRSY 211
Query: 154 LVAMQKGEIPCENXXXXXXXXXXXXXPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCAST 213
L + G++P + P ++F F ++ ND +++ YLA
Sbjct: 212 LEKVASGKLPINHQIIYQLQDVFNLLPDASLQEFVKAFYLKTNDQMVVVYLASLIRSVVA 271
Query: 214 MNELVDKFNTAYDRHSRRG 232
++ L++ D + G
Sbjct: 272 LHNLINNKIANRDAEKKEG 290
>DICTYBASE|DDB_G0279633 [details] [associations]
symbol:psmD7 "26S proteasome non-ATPase regulatory
subunit 7" species:44689 "Dictyostelium discoideum" [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=ISS]
[GO:0005838 "proteasome regulatory particle" evidence=ISS]
[GO:0000502 "proteasome complex" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR000555 Pfam:PF01398
SMART:SM00232 dictyBase:DDB_G0279633 GenomeReviews:CM000152_GR
GO:GO:0006511 EMBL:AAFI02000032 eggNOG:COG1310 InterPro:IPR024969
Pfam:PF13012 KO:K03038 GO:GO:0005838 OMA:RSIIALH MEROPS:M67.973
RefSeq:XP_641565.1 ProteinModelPortal:Q54WI8 SMR:Q54WI8
STRING:Q54WI8 EnsemblProtists:DDB0232987 GeneID:8622140
KEGG:ddi:DDB_G0279633 ProtClustDB:CLSZ2434496 Uniprot:Q54WI8
Length = 325
Score = 122 (48.0 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 41/170 (24%), Positives = 79/170 (46%)
Query: 57 SPVYVLLNPSINPAQKDLP----VTIFESELHVIEGIPQLIFVRSSYTIETVEAERISVD 112
+PV V+++ + P + +P VT+ E E + + SS I+ VEAE I ++
Sbjct: 116 NPVMVIID--VAPKELGIPTKSYVTVEEINKDTSESTMRFQHIPSS--IDAVEAEEICIE 171
Query: 113 HVAH-LKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENXXXXX 171
H+ +K S S TQ+ T ++K L + ++ + HYL + G +P +
Sbjct: 172 HLLRDVKDSSISSLTTQI----TDKKISLKHLLTNLQEMQHYLKLVCDGTLPPNHQIIGY 227
Query: 172 XXXXXXXXPAIESEKFQDDFLMEYNDTLLIAYLA-MFTNCASTMNELVDK 220
P + + + F ++ NDT+ + YL+ M + + N +++K
Sbjct: 228 IQDIINLSPNLNANEISKSFAVQNNDTMSVIYLSSMIRSIIALHNLIINK 277
>RGD|1306902 [details] [associations]
symbol:Psmd7 "proteasome (prosome, macropain) 26S subunit,
non-ATPase, 7" species:10116 "Rattus norvegicus" [GO:0000502
"proteasome complex" evidence=IEA] InterPro:IPR000555 Pfam:PF01398
SMART:SM00232 RGD:1306902 GO:GO:0000502 EMBL:CH473972
InterPro:IPR024969 Pfam:PF13012 GeneTree:ENSGT00530000063075
KO:K03038 OMA:RSIIALH CTD:5713 OrthoDB:EOG441QC3 IPI:IPI00359611
RefSeq:NP_001100896.1 UniGene:Rn.20659 IntAct:D4AEH3
Ensembl:ENSRNOT00000019104 GeneID:307821 KEGG:rno:307821
UCSC:RGD:1306902 NextBio:657930 Uniprot:D4AEH3
Length = 320
Score = 121 (47.7 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 47/199 (23%), Positives = 84/199 (42%)
Query: 45 TSIKLYLMDI--NE-----SPVYVLLNPSINPAQKDLPVTIFES--ELHVIEGIP-QLIF 94
T KL+ DI NE P VL+ + P LP + S E+H +G P F
Sbjct: 97 TGPKLHKNDIAINELMKRYCPNSVLVIIDVKPKDLGLPTEAYISVEEVHD-DGTPTSKTF 155
Query: 95 VRSSYTIETVEAERISVDHVAH-LKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHY 153
+ I EAE + V+H+ +K + G+ + ++ + G+ K LNS++ + Y
Sbjct: 156 EHVTSEIGAEEAEEVGVEHLLRDIKDTTVGTLSQRITNQVHGL----KGLNSKLLDIRTY 211
Query: 154 LVAMQKGEIPCENXXXXXXXXXXXXXPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCAST 213
L + G++P + P ++F F ++ ND +++ YLA
Sbjct: 212 LEKVASGKLPINHHIIYQLQDVFNLLPDASLQEFVKAFYLKTNDQMVVVYLASLIRSVVA 271
Query: 214 MNELVDKFNTAYDRHSRRG 232
++ L++ D + G
Sbjct: 272 LHNLINNKIANRDAEKKEG 290
>FB|FBgn0002787 [details] [associations]
symbol:Rpn8 "Regulatory particle non-ATPase 8" species:7227
"Drosophila melanogaster" [GO:0004175 "endopeptidase activity"
evidence=NAS;IDA] [GO:0000502 "proteasome complex"
evidence=NAS;IDA] [GO:0008541 "proteasome regulatory particle, lid
subcomplex" evidence=ISS;NAS] [GO:0006511 "ubiquitin-dependent
protein catabolic process" evidence=NAS] [GO:0005838 "proteasome
regulatory particle" evidence=ISS;IDA] [GO:0006508 "proteolysis"
evidence=ISS;IDA] [GO:0009987 "cellular process" evidence=IMP]
[GO:0030425 "dendrite" evidence=IMP] [GO:0008283 "cell
proliferation" evidence=IMP] [GO:0000022 "mitotic spindle
elongation" evidence=IMP] [GO:0007052 "mitotic spindle
organization" evidence=IMP] [GO:0022008 "neurogenesis"
evidence=IMP] InterPro:IPR000555 Pfam:PF01398 SMART:SM00232
EMBL:AE013599 GO:GO:0022008 GO:GO:0008283 GO:GO:0030425
GO:GO:0006508 GO:GO:0004175 GO:GO:0008541 eggNOG:COG1310
GO:GO:0000022 InterPro:IPR024969 Pfam:PF13012
GeneTree:ENSGT00530000063075 KO:K03038 BRENDA:3.4.25.1 OMA:RSIIALH
MEROPS:M67.973 EMBL:M64643 EMBL:AY089283 RefSeq:NP_523845.2
UniGene:Dm.770 ProteinModelPortal:P26270 SMR:P26270 DIP:DIP-22847N
IntAct:P26270 MINT:MINT-819762 STRING:P26270 PaxDb:P26270
EnsemblMetazoa:FBtr0072290 EnsemblMetazoa:FBtr0332921 GeneID:37894
KEGG:dme:Dmel_CG3416 UCSC:CG3416-RA CTD:37894 FlyBase:FBgn0002787
InParanoid:P26270 OrthoDB:EOG4BG7BS PhylomeDB:P26270
GenomeRNAi:37894 NextBio:805917 Bgee:P26270 GermOnline:CG3416
Uniprot:P26270
Length = 338
Score = 121 (47.7 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 50/199 (25%), Positives = 85/199 (42%)
Query: 45 TSIKLYLMDI--NE-----SPVYVLLNPSINPAQKDLPVTIFES--ELHVIEGIP-QLIF 94
T KL+ DI NE P VL+ P LP + S E+H +G P F
Sbjct: 100 TGPKLHQNDIAINELVRRYCPNSVLVIIDAKPKDLGLPTEAYISVEEVHD-DGSPTSKTF 158
Query: 95 VRSSYTIETVEAERISVDHVAH-LKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHY 153
I EAE + V+H+ +K + GS + ++ L G+ K LN+++R + Y
Sbjct: 159 EHVPSEIGAEEAEEVGVEHLLRDIKDTTVGSLSQKITNQLMGL----KGLNAQLRDIKQY 214
Query: 154 LVAMQKGEIPCENXXXXXXXXXXXXXPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCAST 213
L + ++P + P I +++F ++ ND +L+ YLA
Sbjct: 215 LQRVGDSKMPINHQIVYQLQDIFNLLPDITNDQFTGTMYVKTNDQMLVVYLASMVRSIIA 274
Query: 214 MNELVDKFNTAYDRHSRRG 232
++ L++ N +R + G
Sbjct: 275 LHNLIN--NKLANRDAEEG 291
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.134 0.386 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 238 225 0.00077 113 3 11 22 0.38 33
32 0.41 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 22
No. of states in DFA: 574 (61 KB)
Total size of DFA: 159 KB (2096 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 18.93u 0.17s 19.10t Elapsed: 00:00:01
Total cpu time: 18.93u 0.17s 19.10t Elapsed: 00:00:01
Start: Fri May 10 16:17:13 2013 End: Fri May 10 16:17:14 2013