BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026489
(238 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8W1P0|CSN6B_ARATH COP9 signalosome complex subunit 6b OS=Arabidopsis thaliana
GN=CSN6B PE=1 SV=2
Length = 317
Score = 335 bits (860), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 159/188 (84%), Positives = 175/188 (93%)
Query: 51 LMDINESPVYVLLNPSINPAQKDLPVTIFESELHVIEGIPQLIFVRSSYTIETVEAERIS 110
LMDINESPVYVLLNP+IN AQKDLPVTI+ESE HVI+GIPQ IFV +SYTIETVEAERIS
Sbjct: 130 LMDINESPVYVLLNPAINHAQKDLPVTIYESEFHVIDGIPQSIFVHTSYTIETVEAERIS 189
Query: 111 VDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENSLLR 170
VDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVL+ ++VAMQKG+ PCENS+LR
Sbjct: 190 VDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLYQHIVAMQKGDKPCENSVLR 249
Query: 171 QVSSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDKFNTAYDRHSR 230
QVSSLLR LPA ESEKF ++FLMEYND LL++YLAM TNC S MNE+VDKFNTAYD+HSR
Sbjct: 250 QVSSLLRSLPAAESEKFNENFLMEYNDKLLMSYLAMITNCTSNMNEVVDKFNTAYDKHSR 309
Query: 231 RGGRTAFI 238
RGGRTAF+
Sbjct: 310 RGGRTAFM 317
>sp|Q8W206|CSN6A_ARATH COP9 signalosome complex subunit 6a OS=Arabidopsis thaliana
GN=CSN6A PE=1 SV=2
Length = 317
Score = 335 bits (859), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 159/188 (84%), Positives = 175/188 (93%)
Query: 51 LMDINESPVYVLLNPSINPAQKDLPVTIFESELHVIEGIPQLIFVRSSYTIETVEAERIS 110
LMDINESPVYVLLNP+IN QKDLPVTI+ESELHVI+GIPQLIF +SYTIETVEAERIS
Sbjct: 130 LMDINESPVYVLLNPAINHTQKDLPVTIYESELHVIDGIPQLIFAHTSYTIETVEAERIS 189
Query: 111 VDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENSLLR 170
VDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVL+ L AMQKG+ C+NS+LR
Sbjct: 190 VDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLYQNLAAMQKGDKSCDNSVLR 249
Query: 171 QVSSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDKFNTAYDRHSR 230
QVSSLLRRLPA+ESE+FQD+FLMEYND LLI YLAM TNC+S MNE+VDKFNTAYDR++R
Sbjct: 250 QVSSLLRRLPAMESERFQDNFLMEYNDKLLITYLAMITNCSSNMNEMVDKFNTAYDRNTR 309
Query: 231 RGGRTAFI 238
RGGRTAF+
Sbjct: 310 RGGRTAFM 317
>sp|Q54C92|CSN6_DICDI COP9 signalosome complex subunit 6 OS=Dictyostelium discoideum
GN=csn6 PE=1 SV=1
Length = 309
Score = 164 bits (416), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 78/177 (44%), Positives = 122/177 (68%), Gaps = 3/177 (1%)
Query: 55 NESPVYVLLNPSINPAQKDLPVTIFESELHVIEGIPQLIFVRSSYTIETVEAERISVDHV 114
NESP+Y++L+ +P KDLPV I+ESELH++ P IFV++ Y I+T EAERI V+H+
Sbjct: 132 NESPLYLMLDTD-SPKSKDLPVIIYESELHIVNDEPTTIFVKTPYKIQTGEAERIGVNHI 190
Query: 115 AHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENSLLRQVSS 174
A + PS GS + L +HL +H+AI MLN R++ L YL A+++ +P E ++LR+ SS
Sbjct: 191 AKVTPS--GSEGSGLTSHLFTMHNAISMLNIRVKALSDYLQAVKEKRLPYEQNILRKASS 248
Query: 175 LLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDKFNTAYDRHSRR 231
L +LP I++ F+ +L EYND LL+ YLA T ++++N+ +DK+ + ++ S+R
Sbjct: 249 LCNQLPTIDTHDFKKSYLQEYNDVLLVTYLASITKTSASLNDTIDKYLVSNEKQSKR 305
>sp|Q7L5N1|CSN6_HUMAN COP9 signalosome complex subunit 6 OS=Homo sapiens GN=COPS6 PE=1
SV=1
Length = 327
Score = 149 bits (376), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 75/177 (42%), Positives = 112/177 (63%), Gaps = 3/177 (1%)
Query: 53 DINESPVYVLLNPSINPAQKDLPVTIFESELHVIEGIPQLIFVRSSYTIETVEAERISVD 112
+I ESP+++ LNP DLPV++FES + +I G ++F +YT+ T EAERI VD
Sbjct: 144 EIIESPLFLKLNPMTK--HTDLPVSVFESVIDIINGEATMLFAELTYTLATEEAERIGVD 201
Query: 113 HVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENSLLRQV 172
HVA + + G +T +A HL HSAIKML+SR++++ Y+ A + GE+P + +LR+
Sbjct: 202 HVARMTATGSGENST-VAEHLIAQHSAIKMLHSRVKLILEYVKASEAGEVPFNHEILREA 260
Query: 173 SSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDKFNTAYDRHS 229
+L LP + ++KF+ DF + ND L+AYL T +TMN+ V+KFN YDR
Sbjct: 261 YALCHCLPVLSTDKFKTDFYDQCNDVGLMAYLGTITKTCNTMNQFVNKFNVLYDRQG 317
>sp|Q5REY0|CSN6_PONAB COP9 signalosome complex subunit 6 OS=Pongo abelii GN=COPS6 PE=2
SV=1
Length = 328
Score = 149 bits (376), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 75/177 (42%), Positives = 112/177 (63%), Gaps = 3/177 (1%)
Query: 53 DINESPVYVLLNPSINPAQKDLPVTIFESELHVIEGIPQLIFVRSSYTIETVEAERISVD 112
+I ESP+++ LNP DLPV++FES + +I G ++F +YT+ T EAERI VD
Sbjct: 145 EIIESPLFLKLNPMTK--HTDLPVSVFESVIDIINGEATMLFAELTYTLATEEAERIGVD 202
Query: 113 HVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENSLLRQV 172
HVA + + G +T +A HL HSAIKML+SR++++ Y+ A + GE+P + +LR+
Sbjct: 203 HVARMTATGSGENST-VAEHLIAQHSAIKMLHSRVKLILEYVKASEAGEVPFNHEILREA 261
Query: 173 SSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDKFNTAYDRHS 229
+L LP + ++KF+ DF + ND L+AYL T +TMN+ V+KFN YDR
Sbjct: 262 YALCHCLPVLSTDKFKTDFYDQCNDVGLMAYLGTITKTCNTMNQFVNKFNVLYDRQG 318
>sp|A7TX81|CSN6_PIG COP9 signalosome complex subunit 6 OS=Sus scrofa GN=COPS6 PE=2 SV=1
Length = 323
Score = 149 bits (376), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 75/177 (42%), Positives = 112/177 (63%), Gaps = 3/177 (1%)
Query: 53 DINESPVYVLLNPSINPAQKDLPVTIFESELHVIEGIPQLIFVRSSYTIETVEAERISVD 112
+I ESP+++ LNP DLPV++FES + +I G ++F +YT+ T EAERI VD
Sbjct: 140 EIIESPLFLKLNPMTK--HTDLPVSVFESVIDIINGEATMLFAELTYTLATEEAERIGVD 197
Query: 113 HVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENSLLRQV 172
HVA + + G +T +A HL HSAIKML+SR++++ Y+ A + GE+P + +LR+
Sbjct: 198 HVARMTATGSGENST-VAEHLIAQHSAIKMLHSRVKLILEYVKASEAGEVPFNHEILREA 256
Query: 173 SSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDKFNTAYDRHS 229
+L LP + ++KF+ DF + ND L+AYL T +TMN+ V+KFN YDR
Sbjct: 257 YALCHCLPVLSTDKFKTDFYDQCNDVGLMAYLGTITKTCNTMNQFVNKFNVLYDRQG 313
>sp|A6QQ21|CSN6_BOVIN COP9 signalosome complex subunit 6 OS=Bos taurus GN=COPS6 PE=2 SV=1
Length = 324
Score = 149 bits (375), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 75/177 (42%), Positives = 112/177 (63%), Gaps = 3/177 (1%)
Query: 53 DINESPVYVLLNPSINPAQKDLPVTIFESELHVIEGIPQLIFVRSSYTIETVEAERISVD 112
+I ESP+++ LNP DLPV++FES + +I G ++F +YT+ T EAERI VD
Sbjct: 141 EIIESPLFLKLNPMTK--HTDLPVSVFESVIDIINGEATMLFAELTYTLATEEAERIGVD 198
Query: 113 HVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENSLLRQV 172
HVA + + G +T +A HL HSAIKML+SR++++ Y+ A + GE+P + +LR+
Sbjct: 199 HVARMTATGSGENST-VAEHLIAQHSAIKMLHSRVKLILEYVKASEAGEVPFNHEILREA 257
Query: 173 SSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDKFNTAYDRHS 229
+L LP + ++KF+ DF + ND L+AYL T +TMN+ V+KFN YDR
Sbjct: 258 YALCHCLPVLSTDKFKTDFYDQCNDVGLMAYLGTITKTCNTMNQFVNKFNVLYDRQG 314
>sp|O88545|CSN6_MOUSE COP9 signalosome complex subunit 6 OS=Mus musculus GN=Cops6 PE=1
SV=1
Length = 324
Score = 149 bits (375), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 75/177 (42%), Positives = 112/177 (63%), Gaps = 3/177 (1%)
Query: 53 DINESPVYVLLNPSINPAQKDLPVTIFESELHVIEGIPQLIFVRSSYTIETVEAERISVD 112
+I ESP+++ LNP DLPV++FES + +I G ++F +YT+ T EAERI VD
Sbjct: 141 EIIESPLFLKLNPMTK--HTDLPVSVFESVIDIINGEATMLFAELTYTLATEEAERIGVD 198
Query: 113 HVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENSLLRQV 172
HVA + + G +T +A HL HSAIKML+SR++++ Y+ A + GE+P + +LR+
Sbjct: 199 HVARMTATGSGENST-VAEHLIAQHSAIKMLHSRVKLILEYVKASEAGEVPFNHEILREA 257
Query: 173 SSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDKFNTAYDRHS 229
+L LP + ++KF+ DF + ND L+AYL T +TMN+ V+KFN YDR
Sbjct: 258 YALCHCLPVLSTDKFKTDFYDQCNDVGLMAYLGTITKTCNTMNQFVNKFNVLYDRQG 314
>sp|Q6NUC2|CSN6_XENLA COP9 signalosome complex subunit 6 OS=Xenopus laevis GN=cops6 PE=2
SV=1
Length = 318
Score = 147 bits (372), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 74/177 (41%), Positives = 112/177 (63%), Gaps = 3/177 (1%)
Query: 53 DINESPVYVLLNPSINPAQKDLPVTIFESELHVIEGIPQLIFVRSSYTIETVEAERISVD 112
+I ESP+++ LNP DLPV+++ES + ++ G ++ SYT+ T EAERI VD
Sbjct: 135 EIIESPLFLKLNPMTK--HTDLPVSVYESVIDIVNGEATMLLAELSYTLATEEAERIGVD 192
Query: 113 HVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENSLLRQV 172
HVA + + G +T +A HL HSAIKML+SR+R++ Y+ A + GE+P + +LR+
Sbjct: 193 HVARMTATGSGENST-VAEHLIAQHSAIKMLHSRVRLILEYVRAAEGGEVPFNHEILREA 251
Query: 173 SSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDKFNTAYDRHS 229
S+L LP + ++KF+ DF + ND L++YL T +TMN+ V+KFN YDR
Sbjct: 252 SALCHCLPVLSTDKFKTDFYDQCNDVGLMSYLGTITKTCNTMNQFVNKFNILYDRQG 308
>sp|Q07G98|CSN6_XENTR COP9 signalosome complex subunit 6 OS=Xenopus tropicalis GN=cops6
PE=2 SV=1
Length = 319
Score = 146 bits (369), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 74/177 (41%), Positives = 112/177 (63%), Gaps = 3/177 (1%)
Query: 53 DINESPVYVLLNPSINPAQKDLPVTIFESELHVIEGIPQLIFVRSSYTIETVEAERISVD 112
+I ESP+++ LNP DLPV+++ES + ++ G ++ SYT+ T EAERI VD
Sbjct: 136 EIIESPLFLKLNPMTK--HTDLPVSVYESVIDIVNGEATMLLAELSYTLATEEAERIGVD 193
Query: 113 HVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENSLLRQV 172
HVA + + G +T +A HL HSAIKML+SR+R++ Y+ A + GE+P + +LR+
Sbjct: 194 HVARMTATGSGENST-VAEHLIAQHSAIKMLHSRVRLILEYVRAAEAGEVPFNHEILREA 252
Query: 173 SSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDKFNTAYDRHS 229
S+L LP + ++KF+ DF + ND L++YL T +TMN+ V+KFN YDR
Sbjct: 253 SALCHCLPVLSTDKFKMDFYDQCNDVGLMSYLGTITKTCNTMNQFVNKFNILYDRQG 309
>sp|Q9VCY3|CSN6_DROME COP9 signalosome complex subunit 6 OS=Drosophila melanogaster
GN=CSN6 PE=1 SV=1
Length = 341
Score = 134 bits (338), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 71/191 (37%), Positives = 114/191 (59%), Gaps = 4/191 (2%)
Query: 41 NPICTSIKLY--LMDINESPVYVLLNPSINPAQKDLPVTIFESELHVIEGIPQLIFVRSS 98
NP IK+ + INE P+ + LNP ++ + LP+ +FES + +++G ++FV +
Sbjct: 143 NPTADDIKIQRQIAAINECPIMLQLNP-LSRSVDHLPLKLFESLIDLVDGEATMLFVPLT 201
Query: 99 YTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQ 158
YT+ T EAERI VDHVA + ++ G + +A HL SAIKMLN+RI+++ Y+ ++
Sbjct: 202 YTLATEEAERIGVDHVARMTSNESGEKSV-VAEHLVAQDSAIKMLNTRIKIVLQYIRDVE 260
Query: 159 KGEIPCENSLLRQVSSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELV 218
G++ +LR+ +L RLP ++ FQ++F + ND LI+YL T + M+ V
Sbjct: 261 AGKLRANQEILREAYALCHRLPVMQVPAFQEEFYTQCNDVGLISYLGTLTKGCNDMHHFV 320
Query: 219 DKFNTAYDRHS 229
+KFN YDR
Sbjct: 321 NKFNMLYDRQG 331
>sp|O24412|PSD7_ARATH Probable 26S proteasome non-ATPase regulatory subunit 7
OS=Arabidopsis thaliana GN=RPN8 PE=2 SV=1
Length = 308
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 83/167 (49%), Gaps = 10/167 (5%)
Query: 57 SPVYVLLNPSINPAQKDLPVTIFESELHVIEGI---PQLIFVRSSYTIETVEAERISVDH 113
+PV V+++ + P + +P + + V E Q +FV S I E E I V+H
Sbjct: 125 NPVLVIID--VQPKELGIPTKAYYAVEEVKENATQKSQKVFVHVSTEIAAHEVEEIGVEH 182
Query: 114 VAH-LKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENSLLRQV 172
+ +K + + AT++ A LT A+K L++R+R + YL + +G++P + +L +
Sbjct: 183 LLRDVKDTTISTLATEVTAKLT----ALKGLDARLREIRSYLDLVIEGKLPLNHEILYHL 238
Query: 173 SSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVD 219
+ LP + + F ++ ND +L+ YL+ ++ L++
Sbjct: 239 QDVFNLLPNLNVNELVKAFSVKTNDMMLVIYLSSLIRSVIALHNLIN 285
>sp|Q95PZ0|CSN6_CAEEL COP9 signalosome complex subunit 6 OS=Caenorhabditis elegans
GN=csn-6 PE=1 SV=1
Length = 426
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/186 (21%), Positives = 84/186 (45%), Gaps = 10/186 (5%)
Query: 39 LKNPICTSIKLYLMDINESPVYVLLNPSINPAQKDLPVTIFESELHVIEGIPQLIFVRSS 98
L N + S K +D + +++ LN + LP+ FE+++ E + ++
Sbjct: 120 LTNAVRNSEKAGQID---ATLFLKLNSITAGTTRKLPLFAFEADVTDQEKHKPIEWI--- 173
Query: 99 YTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQ 158
+ + E+ER+ V+H+A L G + H +A+ ML +R+ ++ YL +Q
Sbjct: 174 --LVSEESERVGVNHIAKLSTKHGKDGKSVGKKHAEAQDAAMSMLQNRVDLIVAYLEKVQ 231
Query: 159 KGEIPCENSLLRQVSSLLRRLPAIE--SEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNE 216
G + +L++ + L ++L I+ + +F D F E + + + T M
Sbjct: 232 DGTLQPNFEILKEANLLAQKLKTIDRYAAEFTDSFEKEEKTMTVFSLMPRLTTLLGNMQN 291
Query: 217 LVDKFN 222
+ +K +
Sbjct: 292 VWNKLS 297
>sp|Q3ZBD0|PSD7_BOVIN 26S proteasome non-ATPase regulatory subunit 7 OS=Bos taurus
GN=PSMD7 PE=2 SV=1
Length = 322
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 77/181 (42%), Gaps = 13/181 (7%)
Query: 58 PVYVLLNPSINPAQKDLPVTIFES--ELHVIEGIPQLIFVRSSYTIETVEAE----RISV 111
P VL+ + P LP + S E+H +G P +S T E V +E
Sbjct: 117 PNSVLVIIDVKPKDLGLPTEAYISVEEVH-DDGTP------TSKTFEHVTSEIGAEEAEE 169
Query: 112 DHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENSLLRQ 171
V HL + L+ +T +K LNS++ + YL + G++P + ++ Q
Sbjct: 170 VGVEHLLRDIKDTTVGTLSQRITNQVHGLKGLNSKLLDIRGYLEKVATGKLPINHQIIYQ 229
Query: 172 VSSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDKFNTAYDRHSRR 231
+ + LP + ++F F ++ ND +++ YLA ++ L++ D +
Sbjct: 230 LQDVFNLLPDVSLQEFVKAFYLKTNDQMVVVYLASLIRSVVALHNLINNKIANRDAEKKE 289
Query: 232 G 232
G
Sbjct: 290 G 290
>sp|Q54WI8|PSD7_DICDI 26S proteasome non-ATPase regulatory subunit 7 OS=Dictyostelium
discoideum GN=psmD7 PE=3 SV=1
Length = 325
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 78/164 (47%), Gaps = 18/164 (10%)
Query: 53 DINE-------SPVYVLLNPSINPAQKDLP----VTIFESELHVIEGIPQLIFVRSSYTI 101
DINE +PV V+++ + P + +P VT+ E E + + SS I
Sbjct: 105 DINELFRRYTPNPVMVIID--VAPKELGIPTKSYVTVEEINKDTSESTMRFQHIPSS--I 160
Query: 102 ETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGE 161
+ VEAE I ++H+ S+ + L +T ++K L + ++ + HYL + G
Sbjct: 161 DAVEAEEICIEHLLR---DVKDSSISSLTTQITDKKISLKHLLTNLQEMQHYLKLVCDGT 217
Query: 162 IPCENSLLRQVSSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLA 205
+P + ++ + ++ P + + + F ++ NDT+ + YL+
Sbjct: 218 LPPNHQIIGYIQDIINLSPNLNANEISKSFAVQNNDTMSVIYLS 261
>sp|P26270|PSD7_DROME 26S proteasome non-ATPase regulatory subunit 7 OS=Drosophila
melanogaster GN=Mov34 PE=1 SV=6
Length = 338
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 55/110 (50%), Gaps = 6/110 (5%)
Query: 123 GSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENSLLRQVSSLLRRLPAI 182
GS + ++ L G+ K LN+++R + YL + ++P + ++ Q+ + LP I
Sbjct: 188 GSLSQKITNQLMGL----KGLNAQLRDIKQYLQRVGDSKMPINHQIVYQLQDIFNLLPDI 243
Query: 183 ESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDKFNTAYDRHSRRG 232
+++F ++ ND +L+ YLA ++ L++ N +R + G
Sbjct: 244 TNDQFTGTMYVKTNDQMLVVYLASMVRSIIALHNLIN--NKLANRDAEEG 291
>sp|P51665|PSD7_HUMAN 26S proteasome non-ATPase regulatory subunit 7 OS=Homo sapiens
GN=PSMD7 PE=1 SV=2
Length = 324
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 74/168 (44%), Gaps = 13/168 (7%)
Query: 58 PVYVLLNPSINPAQKDLPVTIFES--ELHVIEGIPQLIFVRSSYTIETVEAE----RISV 111
P VL+ + P LP + S E+H +G P +S T E V +E
Sbjct: 117 PNSVLVIIDVKPKDLGLPTEAYISVEEVH-DDGTP------TSKTFEHVTSEIGAEEAEE 169
Query: 112 DHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENSLLRQ 171
V HL + L+ +T +K LNS++ + YL + G++P + ++ Q
Sbjct: 170 VGVEHLLRDIKDTTVGTLSQRITNQVHGLKGLNSKLLDIRSYLEKVATGKLPINHQIIYQ 229
Query: 172 VSSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVD 219
+ + LP + ++F F ++ ND +++ YLA ++ L++
Sbjct: 230 LQDVFNLLPDVSLQEFVKAFYLKTNDQMVVVYLASLIRSVVALHNLIN 277
>sp|P68357|CSN6B_BRAOL COP9 signalosome complex subunit 6b (Fragments) OS=Brassica
oleracea GN=CSN6B PE=1 SV=1
Length = 58
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/24 (83%), Positives = 22/24 (91%)
Query: 51 LMDINESPVYVLLNPSINPAQKDL 74
LMDINESPVYVLLNP+IN AQK +
Sbjct: 18 LMDINESPVYVLLNPTINHAQKKM 41
Score = 37.0 bits (84), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/23 (73%), Positives = 19/23 (82%)
Query: 137 HSAIKMLNSRIRVLHHYLVAMQK 159
H+ KMLNSRIRVLH YL +MQK
Sbjct: 36 HAQKKMLNSRIRVLHQYLGSMQK 58
>sp|P26516|PSD7_MOUSE 26S proteasome non-ATPase regulatory subunit 7 OS=Mus musculus
GN=Psmd7 PE=1 SV=2
Length = 321
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 73/168 (43%), Gaps = 13/168 (7%)
Query: 58 PVYVLLNPSINPAQKDLPVTIFES--ELHVIEGIPQLIFVRSSYTIETVEAE----RISV 111
P VL+ + P LP + S E+H +G P +S T E V +E
Sbjct: 117 PNSVLVIIDVKPKDLGLPTEAYISVEEVH-DDGTP------TSKTFEHVTSEIGAEEAEE 169
Query: 112 DHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENSLLRQ 171
V HL + L+ +T +K LNS++ + YL + G++P + ++ Q
Sbjct: 170 VGVEHLLRDIKDTTVGTLSQRITNQVHGLKGLNSKLLDIRSYLEKVASGKLPINHQIIYQ 229
Query: 172 VSSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVD 219
+ + LP ++F F ++ ND +++ YLA ++ L++
Sbjct: 230 LQDVFNLLPDASLQEFVKAFYLKTNDQMVVVYLASLIRSVVALHNLIN 277
>sp|Q4R5B8|EIF3F_MACFA Eukaryotic translation initiation factor 3 subunit F OS=Macaca
fascicularis GN=EIF3F PE=2 SV=1
Length = 361
Score = 40.4 bits (93), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 52/112 (46%), Gaps = 2/112 (1%)
Query: 105 EAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPC 164
+ ERI VD + +K + L++ L + A + + + Y + G++
Sbjct: 247 DTERIGVDLI--MKTCFSPNRVIGLSSDLQQVGGASARIQDALSTVLQYAEDVLSGKVSA 304
Query: 165 ENSLLRQVSSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNE 216
+N++ R + SL+ ++P I + F+ ND L++ YLA T +NE
Sbjct: 305 DNTVGRFLMSLVNQVPKIVPDDFETMLNSNINDLLMVTYLANLTQSQIALNE 356
>sp|O00303|EIF3F_HUMAN Eukaryotic translation initiation factor 3 subunit F OS=Homo
sapiens GN=EIF3F PE=1 SV=1
Length = 357
Score = 40.4 bits (93), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 52/112 (46%), Gaps = 2/112 (1%)
Query: 105 EAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPC 164
+ ERI VD + +K + L++ L + A + + + Y + G++
Sbjct: 243 DTERIGVDLI--MKTCFSPNRVIGLSSDLQQVGGASARIQDALSTVLQYAEDVLSGKVSA 300
Query: 165 ENSLLRQVSSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNE 216
+N++ R + SL+ ++P I + F+ ND L++ YLA T +NE
Sbjct: 301 DNTVGRFLMSLVNQVPKIVPDDFETMLNSNINDLLMVTYLANLTQSQIALNE 352
>sp|A5A6I3|EIF3F_PANTR Eukaryotic translation initiation factor 3 subunit F OS=Pan
troglodytes GN=EIF3F PE=2 SV=1
Length = 361
Score = 40.4 bits (93), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 52/112 (46%), Gaps = 2/112 (1%)
Query: 105 EAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPC 164
+ ERI VD + +K + L++ L + A + + + Y + G++
Sbjct: 247 DTERIGVDLI--MKTCFSPNRVIGLSSDLQQVGGASARIQDALSTVLQYAEDVLSGKVSA 304
Query: 165 ENSLLRQVSSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNE 216
+N++ R + SL+ ++P I + F+ ND L++ YLA T +NE
Sbjct: 305 DNTVGRFLMSLVNQVPKIVPDDFETMLNSNINDLLMVTYLANLTQSQIALNE 356
>sp|Q9DCH4|EIF3F_MOUSE Eukaryotic translation initiation factor 3 subunit F OS=Mus
musculus GN=Eif3f PE=1 SV=2
Length = 361
Score = 40.4 bits (93), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 52/112 (46%), Gaps = 2/112 (1%)
Query: 105 EAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPC 164
+ ERI VD + +K + L++ L + A + + + Y + G++
Sbjct: 247 DTERIGVDLI--MKTCFSPNRVIGLSSDLQQVGGASARIQDALSTVLQYAEDVLSGKVSA 304
Query: 165 ENSLLRQVSSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNE 216
+N++ R + SL+ ++P I + F+ ND L++ YLA T +NE
Sbjct: 305 DNTVGRFLMSLVNQVPKIVPDDFETMLNSNINDLLMVTYLANLTQSQIALNE 356
>sp|Q1DRC9|EIF3F_COCIM Eukaryotic translation initiation factor 3 subunit F
OS=Coccidioides immitis (strain RS) GN=CIMG_07134 PE=3
SV=1
Length = 348
Score = 38.5 bits (88), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 59/131 (45%), Gaps = 5/131 (3%)
Query: 94 FVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHY 153
F+ Y I EAER ++ +A + D A+ L + + +I+ + I + Y
Sbjct: 178 FIPVPYEIRYSEAERNGLEAIAQAR--DAEDRASSLFTDIETLEKSIEEVLGMIDRVSKY 235
Query: 154 LVAMQKGEIPCENSLLRQVSSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCAST 213
+ ++ E P +L + + + L P ++ + DF D L+++YLA N T
Sbjct: 236 VESVIDEEAPASTALGQFLLNALALAPKVDPADIESDFNKHIQDVLVVSYLA---NTIRT 292
Query: 214 MNELVDKFNTA 224
EL ++ TA
Sbjct: 293 QMELSNRLATA 303
>sp|Q5BB47|CSN6_EMENI COP9 signalosome complex subunit 6 OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=csnF PE=1 SV=2
Length = 386
Score = 38.1 bits (87), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 18/82 (21%)
Query: 51 LMDINESPVYVLLNPS----INPAQKDLPVTIFES-----------ELHVIEGIPQLIFV 95
L + NES V++ +PS + +Q LP+TI+ES + ++G QL+ +
Sbjct: 126 LQNHNESAVFLTFHPSQVQGASQSQGKLPLTIYESVYEGESVTENGKAMQVDGEEQLLNI 185
Query: 96 RSS---YTIETVEAERISVDHV 114
R YTIET EAE I +D V
Sbjct: 186 RFRELPYTIETGEAEMIGIDTV 207
>sp|O74440|RPN8_SCHPO 26S proteasome regulatory subunit rpn8 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rpn8 PE=3 SV=1
Length = 324
Score = 36.6 bits (83), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 12/119 (10%)
Query: 114 VAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENSLLRQVS 173
V HL ++ LA +T +++ L R+ + YL + G++P +++L ++
Sbjct: 179 VEHLLRDTRDASVGTLATRVTQQAQSLQGLGQRLTEIADYLRKVVDGQLPINHAILAELQ 238
Query: 174 SLLRRLP-----------AIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDKF 221
S+ LP A+ESE Q F + ND L+ Y++ +++L+D
Sbjct: 239 SVFNLLPNIFSGPVVSEQALESEA-QRAFNVNSNDQLMSIYISSIVRAVIALHDLLDSL 296
>sp|A5V5R3|FLGI_SPHWW Flagellar P-ring protein OS=Sphingomonas wittichii (strain RW1 /
DSM 6014 / JCM 10273) GN=flgI PE=3 SV=1
Length = 367
Score = 34.3 bits (77), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 57/119 (47%), Gaps = 13/119 (10%)
Query: 8 STALSSRRSKNSIRRCSHTSIYLDGTPQGVMLKNPICTSIKLYLMDINESPVYVLLNPS- 66
+ A++ R + R T+I +D PQG ++ + + I+ +D E+P V++N
Sbjct: 204 AAAINGRLGQPIARSIDATTITID-APQGAEVRTALMSRIENLEVDTAEAPARVVVNART 262
Query: 67 ----INPAQKDLPVTIFESELHV-IEGIPQLI----FVRSSYTIETVEAERISVDHVAH 116
IN A + PV + ++ V ++ PQ+I F R ++ ++ I+V+ A
Sbjct: 263 GTVVINGAVRIAPVAVTHGKMTVQVDEKPQIIQPQPFSRGQTAVQ--QSSAINVEQEAR 319
>sp|A0LE47|MNMG_MAGSM tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG
OS=Magnetococcus sp. (strain MC-1) GN=mnmG PE=3 SV=1
Length = 599
Score = 34.3 bits (77), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 55/146 (37%), Gaps = 12/146 (8%)
Query: 3 PPLTPSTALSSRRSKNSIRRCSHTSIYLDGTPQGVMLKNPICTSIKLYLMDINESPVY-V 61
P + A +S+ +K I + H S G +GV + C SI+ + E V+ V
Sbjct: 236 PEMPCWIAQTSKETKQIIEKNIHRSAMYSGQIEGVGPR--YCPSIEDKIKKFKEREVHQV 293
Query: 62 LLNPS--------INPAQKDLPVTIFESELHVIEGIPQLIFVRSSYTIETVEAERISVDH 113
L P +N +P+ + + I G+ V+ Y IE +DH
Sbjct: 294 FLEPEGENTNEMYVNGVSTSMPIDVQWQMIRSIVGLENAQIVKPGYAIEYDMVMPTELDH 353
Query: 114 VAHLKPSDGGSAATQLAAHLTGIHSA 139
K DG A Q+ TG A
Sbjct: 354 TLKTKKYDGLYLAGQING-TTGYEEA 378
>sp|Q9GMU6|SO1C1_MACFA Solute carrier organic anion transporter family member 1C1
OS=Macaca fascicularis GN=SLCO1C1 PE=2 SV=1
Length = 602
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 8/88 (9%)
Query: 10 ALSSRRSKNS---IRRCSHTSIYLDGTPQGVMLKNPICTSIKLYLMDINESPVYVLLNPS 66
+++ +S NS + RC +G PQ + L + + I Y + + P Y+LL
Sbjct: 415 GIAASKSGNSSGIVGRCQKD----NGCPQ-MFLYFLVISVITSYTLSLGGIPGYILLLRC 469
Query: 67 INPAQKDLPVTIFESELHVIEGIPQLIF 94
I P K + I+ + V+ GIP ++
Sbjct: 470 IKPQLKSFALGIYTLSIRVLAGIPAPVY 497
>sp|Q9NYB5|SO1C1_HUMAN Solute carrier organic anion transporter family member 1C1 OS=Homo
sapiens GN=SLCO1C1 PE=2 SV=1
Length = 712
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 8/88 (9%)
Query: 10 ALSSRRSKNS---IRRCSHTSIYLDGTPQGVMLKNPICTSIKLYLMDINESPVYVLLNPS 66
+++ +S NS + RC +G PQ + L + + I Y + + P Y+LL
Sbjct: 525 GIAASKSGNSSGIVGRCQKD----NGCPQ-MFLYFLVISVITSYTLSLGGIPGYILLLRC 579
Query: 67 INPAQKDLPVTIFESELHVIEGIPQLIF 94
I P K + I+ + V+ GIP ++
Sbjct: 580 IKPQLKSFALGIYTLAIRVLAGIPAPVY 607
>sp|Q6FMD8|RPN8_CANGA 26S proteasome regulatory subunit RPN8 OS=Candida glabrata (strain
ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=RPN8 PE=3 SV=1
Length = 329
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/143 (21%), Positives = 58/143 (40%), Gaps = 20/143 (13%)
Query: 94 FVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHY 153
F+ T+E EAE I V+H L AA L+ LT ++K L ++ + Y
Sbjct: 154 FLHLPCTVEAEEAEEIGVEH---LLRDVRDQAAGGLSIRLTNQLKSLKGLQKKLNDIVIY 210
Query: 154 LVAMQKGEIPCENSLLRQVSSLLRRLPAI-----------------ESEKFQDDFLMEYN 196
L + E+P +++L ++ + LP + S Q ++ N
Sbjct: 211 LNKVINNELPVNHTILGKLQDVFNLLPNLGYNEETDVSATSNDMVTASNNLQRALTVKTN 270
Query: 197 DTLLIAYLAMFTNCASTMNELVD 219
D L++ Y+ ++L++
Sbjct: 271 DELMVIYITNLVRAIIAFDDLIE 293
>sp|P68356|CSN6A_BRAOL COP9 signalosome complex subunit 6a (Fragments) OS=Brassica
oleracea GN=CSN6A PE=1 SV=1
Length = 66
Score = 33.1 bits (74), Expect = 1.9, Method: Composition-based stats.
Identities = 13/18 (72%), Positives = 16/18 (88%)
Query: 217 LVDKFNTAYDRHSRRGGR 234
L KFNTAY+R++RRGGR
Sbjct: 49 LAAKFNTAYERNTRRGGR 66
Score = 32.3 bits (72), Expect = 3.1, Method: Composition-based stats.
Identities = 14/16 (87%), Positives = 14/16 (87%)
Query: 141 KMLNSRIRVLHHYLVA 156
KMLNSRIRVLH YL A
Sbjct: 36 KMLNSRIRVLHQYLAA 51
>sp|Q7S8C8|CSN6_NEUCR COP9 signalosome complex subunit 6 OS=Neurospora crassa (strain
ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
987) GN=csn-6 PE=1 SV=1
Length = 497
Score = 32.3 bits (72), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 45/104 (43%), Gaps = 30/104 (28%)
Query: 47 IKLYLMDINESPVYVL--LNPSINPAQKD-LPVTIFESELHVIEGIP------------- 90
I Y NES V + ++ +NP D LP+TI+ES L +++G
Sbjct: 121 IHSYFYSQNESAVLLGFHIHEILNPVAGDPLPLTIYESNLEIVDGTEASTVEVEGEDREM 180
Query: 91 ---------QLIFVRSSYTIETVEAERISVDHVAHLKPSDGGSA 125
+ F YT ET EAE I+++ V +GGSA
Sbjct: 181 KDVTAEPSRSIKFRELPYTTETGEAEMIALEFV-----REGGSA 219
>sp|Q662I6|MNMG_BORGA tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG
OS=Borrelia garinii (strain PBi) GN=mnmG PE=3 SV=1
Length = 621
Score = 31.2 bits (69), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 15/97 (15%)
Query: 67 INPAQKDLPVTIFESELHVIEGIPQLIFVRSSYTIE-----------TVEAERISVDHVA 115
+N LP I + ++ IEG+ I R Y +E +E++R+ VA
Sbjct: 306 LNGLSSSLPENIQQKFINSIEGLEHAIITRPGYAVEYDYINPIELYPNLESKRVKGLFVA 365
Query: 116 HLKPSDGGSAATQLAAH--LTGIHSAIKMLNSRIRVL 150
++G S + AA + GI++A+++ N + +L
Sbjct: 366 G--QTNGSSGYEEAAAQGLMAGINAALRLQNKKPMIL 400
>sp|Q9P748|EIF3F_NEUCR Eukaryotic translation initiation factor 3 subunit F OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /
DSM 1257 / FGSC 987) GN=1A9.200 PE=3 SV=2
Length = 369
Score = 31.2 bits (69), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 28/142 (19%), Positives = 64/142 (45%), Gaps = 5/142 (3%)
Query: 93 IFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHH 152
+F+ + + +AER ++ VA +D S + + + + + A++ ++ + +
Sbjct: 181 LFIEVPHKLLFTDAERGALGSVA--AAADAESRSAPVVSDIENLAQALETVSDLLERVSG 238
Query: 153 YLVAMQKGEIPCENSLLRQVSSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCAS 212
++ + E ++L + + + L P + + ++DF D L+++YLA N
Sbjct: 239 FVGEVLDEERDGNHALGQYLMNALSLAPKVSNLAIENDFNNHIQDVLMVSYLA---NTIR 295
Query: 213 TMNELVDKFNTAYDRHSRRGGR 234
T EL + TA + GG
Sbjct: 296 TQIELSQRLATAKLDEGKEGGE 317
>sp|Q08723|RPN8_YEAST 26S proteasome regulatory subunit RPN8 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RPN8 PE=1 SV=3
Length = 338
Score = 30.8 bits (68), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 25/123 (20%), Positives = 51/123 (41%), Gaps = 17/123 (13%)
Query: 114 VAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENSLLRQVS 173
V HL AA L+ LT ++K L S+++ + YL + E+P +++L ++
Sbjct: 171 VEHLLRDVRDQAAGGLSIRLTNQLKSLKGLQSKLKDVVEYLDKVINKELPINHTILGKLQ 230
Query: 174 SLLRRLPAIE-----------------SEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNE 216
+ LP + S Q ++ ND L++ Y++ ++
Sbjct: 231 DVFNLLPNLGTPDDDEIDVENHDRINISNNLQKALTVKTNDELMVIYISNLVRSIIAFDD 290
Query: 217 LVD 219
L++
Sbjct: 291 LIE 293
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.134 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,152,808
Number of Sequences: 539616
Number of extensions: 3247431
Number of successful extensions: 7622
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 7568
Number of HSP's gapped (non-prelim): 51
length of query: 238
length of database: 191,569,459
effective HSP length: 114
effective length of query: 124
effective length of database: 130,053,235
effective search space: 16126601140
effective search space used: 16126601140
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)