Query 026489
Match_columns 238
No_of_seqs 111 out of 456
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 14:46:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026489.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026489hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_U RPN8, 26S proteasome re 100.0 9.8E-43 3.3E-47 317.7 13.5 192 26-222 81-296 (338)
2 2o95_A 26S proteasome non-ATPa 99.7 3.1E-16 1.1E-20 131.2 10.2 94 25-120 83-182 (187)
3 4b4t_V 26S proteasome regulato 99.1 8.6E-11 3E-15 105.5 5.0 161 26-197 96-294 (306)
4 4e0q_A COP9 signalosome comple 98.9 1.3E-10 4.4E-15 93.4 -0.8 57 26-83 80-140 (141)
5 2akf_A Coronin-1A; coiled coil 73.9 7.7 0.00026 22.3 4.5 29 128-156 3-31 (32)
6 2znr_A AMSH-like protease; met 69.9 1.9 6.4E-05 35.0 1.9 50 30-85 80-137 (178)
7 3rzv_A STAM-binding protein; u 68.1 2.7 9.4E-05 35.2 2.6 51 30-86 113-171 (211)
8 1oxz_A ADP-ribosylation factor 49.1 1.1E+02 0.0036 24.9 11.4 88 132-227 70-160 (186)
9 1wrd_A TOM1, target of MYB pro 48.0 77 0.0026 23.0 8.9 87 132-226 7-94 (103)
10 1naf_A ADP-ribosylation factor 39.7 1.4E+02 0.0047 23.6 10.5 89 132-228 54-145 (158)
11 1wr6_A ADP-ribosylation factor 37.9 32 0.0011 25.7 3.8 83 131-228 8-92 (111)
12 1o3x_A ADP-ribosylation factor 35.1 1.5E+02 0.0052 22.7 10.1 89 132-228 45-136 (140)
13 2xpp_A IWS1, ECU08_0440; trans 34.4 87 0.003 24.4 6.0 72 144-222 60-131 (145)
14 3qwg_A ESX-1 secretion-associa 32.5 47 0.0016 24.8 4.0 32 149-180 41-73 (123)
15 2xi8_A Putative transcription 29.2 42 0.0014 20.8 2.8 37 141-177 18-54 (66)
16 3kz3_A Repressor protein CI; f 29.1 50 0.0017 21.8 3.4 38 141-178 29-66 (80)
17 3qq6_A HTH-type transcriptiona 26.6 46 0.0016 22.1 2.8 39 140-178 26-65 (78)
18 3s8q_A R-M controller protein; 26.0 43 0.0015 22.1 2.6 37 141-177 28-64 (82)
19 1adr_A P22 C2 repressor; trans 24.7 53 0.0018 21.0 2.8 38 140-177 21-58 (76)
20 2ewt_A BLDD, putative DNA-bind 24.6 41 0.0014 21.3 2.2 38 141-178 25-64 (71)
21 3r1f_A ESX-1 secretion-associa 24.5 84 0.0029 23.7 4.2 41 140-180 29-75 (135)
22 3f6w_A XRE-family like protein 24.3 70 0.0024 21.0 3.4 38 141-178 31-68 (83)
23 2r1j_L Repressor protein C2; p 24.0 51 0.0017 20.5 2.5 38 140-177 21-58 (68)
24 3g5g_A Regulatory protein; tra 23.8 56 0.0019 23.0 2.9 37 141-177 45-81 (99)
25 3omt_A Uncharacterized protein 23.8 58 0.002 20.9 2.8 40 139-178 23-62 (73)
26 1y7y_A C.AHDI; helix-turn-heli 23.8 61 0.0021 20.6 2.9 38 141-178 30-67 (74)
27 2k9q_A Uncharacterized protein 23.4 43 0.0015 21.9 2.1 38 140-177 18-55 (77)
28 3trb_A Virulence-associated pr 23.3 71 0.0024 22.9 3.4 40 139-178 29-68 (104)
29 3vk0_A NHTF, transcriptional r 23.2 60 0.0021 23.2 3.0 39 141-179 38-76 (114)
30 3bs3_A Putative DNA-binding pr 22.9 78 0.0027 20.2 3.4 39 140-178 26-64 (76)
31 3b7h_A Prophage LP1 protein 11 21.5 74 0.0025 20.4 3.0 39 140-178 23-62 (78)
32 2kks_A Uncharacterized protein 20.9 1.1E+02 0.0038 23.1 4.3 60 30-103 72-137 (146)
33 3fym_A Putative uncharacterize 20.9 37 0.0013 25.4 1.5 51 139-193 18-74 (130)
34 2b5a_A C.BCLI; helix-turn-heli 20.7 63 0.0021 20.7 2.5 38 140-177 26-63 (77)
35 3kpe_A Fusion glycoprotein F0; 20.5 1.6E+02 0.0054 18.9 4.2 29 131-159 18-46 (51)
36 1x57_A Endothelial differentia 20.5 80 0.0027 21.3 3.1 40 141-180 30-69 (91)
37 3eus_A DNA-binding protein; st 20.1 60 0.0021 21.9 2.4 38 141-178 31-68 (86)
No 1
>4b4t_U RPN8, 26S proteasome regulatory subunit RPN8; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.8e-43 Score=317.73 Aligned_cols=192 Identities=20% Similarity=0.324 Sum_probs=107.7
Q ss_pred ceeecCCeeecccc----CCCCcHHHHHHHhccCC-CceEEEEcCCCCCCCCCCCeeEEEEeeeeeCC-cc-ceeeEeec
Q 026489 26 TSIYLDGTPQGVML----KNPICTSIKLYLMDINE-SPVYVLLNPSINPAQKDLPVTIFESELHVIEG-IP-QLIFVRSS 98 (238)
Q Consensus 26 ~~~~~~~~~~g~~~----~~~~~~~IH~~~~~~~~-~PI~L~vD~~~~~~~~~LPi~aYes~~~~~~g-~~-~~~F~~ip 98 (238)
++|+++..++|||+ ++++|+.||++|+++|+ +|+||++|+... +++||+++|++..++.++ .. ...|+++|
T Consensus 81 kkV~~~e~iVGWY~tg~~~~~~d~~Ih~~~~~~~~~~pi~l~~d~~~~--~~~lpi~aY~s~~~~~~~~~~~~~~F~~lp 158 (338)
T 4b4t_U 81 KKINAKEKLIGWYHSGPKLRASDLKINELFKKYTQNNPLLLIVDVKQQ--GVGLPTDAYVAIEQVKDDGTSTEKTFLHLP 158 (338)
T ss_dssp HHHCCSCEEEEEEECCSSCCSTHHHHHHHHGGGCCSCCCEEEECSCCC--SSSCSEEEEEEEEECSSCSTTCEEEEEEEC
T ss_pred hhcCccCCEEEEEecCCCCCccHHHHHHHHHhccCCCcEEEEecCCCC--CCCcceEEEEeehhccCCCcccccEEEEee
Confidence 55666666677776 36799999999999985 899999999876 678999999999887664 33 68999999
Q ss_pred eeeeccchhHHHHHHHhhhCCCCCCChhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHhc
Q 026489 99 YTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENSLLRQVSSLLRR 178 (238)
Q Consensus 99 ~~I~t~EaErIgVd~l~~~~~~~~~~~~~~l~~~l~~~~~al~~L~~rL~~i~~YL~~V~~G~~~~d~~IlR~l~~l~~~ 178 (238)
|+|+++|||||||||+++...+. +.+.+..++.++.+|+++|+.||+.|.+||++|.+|++++|++|||+|+++|++
T Consensus 159 ~~i~~~eaE~Igv~~l~r~~~~~---~~~~l~~~l~~~~~al~~L~~~l~~i~~Yl~~V~~g~~~~n~~ilr~l~~~~~~ 235 (338)
T 4b4t_U 159 CTIEAEEAEEIGVEHLLRDVRDQ---AAGGLSIRLTNQLKSLKGLQSKLKDVVEYLDKVINKELPINHTILGKLQDVFNL 235 (338)
T ss_dssp EEECSCHHHHHHHHHHHHHHSSC---C---CHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------------------
T ss_pred eEeecCcHHHHHHHHHHhccccC---cccccchhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhh
Confidence 99999999999999999976542 345678899999999999999999999999999999999999999999999999
Q ss_pred CCCCCh-----------------HHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026489 179 LPAIES-----------------EKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDKFN 222 (238)
Q Consensus 179 lP~~~~-----------------~~f~~~~~~~~~D~lmvsyLs~Ltk~~~al~el~~Kl~ 222 (238)
+|.+.. ++|+++|+.++||++||+|||+|||+|.+||+++++..
T Consensus 236 lP~l~~~~~~~~~~~~~~~~~~~~~f~~~f~~~~nD~Lmv~YLs~L~rs~~al~eli~nk~ 296 (338)
T 4b4t_U 236 LPNLGTPDDDEIDVENHDRINISNNLQKALTVKTNDELMVIYISNLVRSIIAFDDLIENKI 296 (338)
T ss_dssp -------------------------------------------------------------
T ss_pred CCcCCcccccccccccccccchhHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998854 45999999999999999999999999999999998763
No 2
>2o95_A 26S proteasome non-ATPase regulatory subunit 7; PSMD7, MOV34, JAB1/MPN, metal-free dimer, UN function; HET: SO4 12P ETE PG4 PGE; 1.95A {Homo sapiens} PDB: 2o96_A
Probab=99.66 E-value=3.1e-16 Score=131.19 Aligned_cols=94 Identities=17% Similarity=0.175 Sum_probs=77.8
Q ss_pred cceeecCCeeeccccC----CCCcHHHHHHHhccCCCceEEEEcCCCCCCCCCCCeeEEEEeeeeeC-Cc-cceeeEeec
Q 026489 25 HTSIYLDGTPQGVMLK----NPICTSIKLYLMDINESPVYVLLNPSINPAQKDLPVTIFESELHVIE-GI-PQLIFVRSS 98 (238)
Q Consensus 25 ~~~~~~~~~~~g~~~~----~~~~~~IH~~~~~~~~~PI~L~vD~~~~~~~~~LPi~aYes~~~~~~-g~-~~~~F~~ip 98 (238)
+++++.+...+|||+. ++.|..||++|.+++++|++|++|+... .+++|+++|++.+++.+ |. ....|+++|
T Consensus 83 ~~~v~~~~~iVGWY~s~~~~s~~d~~i~~~~~~~~~~~v~Livd~~~~--~~~l~i~ay~~~~~~~~~~~~~~~~F~~ip 160 (187)
T 2o95_A 83 FKKVNARERIVGWYHTGPKLHKNDIAINELMKRYCPNSVLVIIDVKPK--DLGLPTEAYISVEEVHDDGTPTSKTFEHVT 160 (187)
T ss_dssp HHTTSSSCEEEEEEECCSSCCTTHHHHHHHHTTTCTTCEEEEECCCTT--C-CCSEEEEEEEEECC----CCEEEEEEEE
T ss_pred HHHhCCCCCEEEEEcCCCcCCcccHHHHHHHHhcCCCCEEEEECCCCC--CCCcCeEEEEEechhcCCCCcccCEEEEee
Confidence 3556677888888873 5588999999999999999999999764 35699999999988765 33 378999999
Q ss_pred eeeeccchhHHHHHHHhhhCCC
Q 026489 99 YTIETVEAERISVDHVAHLKPS 120 (238)
Q Consensus 99 ~~I~t~EaErIgVd~l~~~~~~ 120 (238)
++|+++|||||||||++|...+
T Consensus 161 ~~I~~~eaE~i~v~~l~~~~~~ 182 (187)
T 2o95_A 161 SEIGAEEAEEVGVEHLLRDIKD 182 (187)
T ss_dssp EEECCCHHHHHHHHHHHHHCCS
T ss_pred EEEecCcHHHHHHHHHHhcCCC
Confidence 9999999999999999998765
No 3
>4b4t_V 26S proteasome regulatory subunit RPN11; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.06 E-value=8.6e-11 Score=105.49 Aligned_cols=161 Identities=11% Similarity=0.069 Sum_probs=113.1
Q ss_pred ceeecCCeeeccccCCC--------CcHHHHHHHhccCCCceEEEEcCCCCCCCCCCCeeEEEEeeeeeC----------
Q 026489 26 TSIYLDGTPQGVMLKNP--------ICTSIKLYLMDINESPVYVLLNPSINPAQKDLPVTIFESELHVIE---------- 87 (238)
Q Consensus 26 ~~~~~~~~~~g~~~~~~--------~~~~IH~~~~~~~~~PI~L~vD~~~~~~~~~LPi~aYes~~~~~~---------- 87 (238)
+++..+...+||||..| .|...|..|...++.||+|++||..+. .++++++||...+.+..
T Consensus 96 ~~v~~~~~vVGWYhShP~~~~~~S~~Di~tq~~yQ~~~~~~V~lV~Dp~~t~-~G~~~i~Afr~~~~~~~~~~~~~~~~~ 174 (306)
T 4b4t_V 96 KQTGRDQMVVGWYHSHPGFGCWLSSVDVNTQKSFEQLNSRAVAVVVDPIQSV-KGKVVIDAFRLIDTGALINNLEPRQTT 174 (306)
T ss_dssp HHHSCCCCCSEEEEECCSSSCCCCHHHHHHHHHHHHHCSSCEEEEECSSSSS-SCSSCEEEEECCHHHHHHCCCCCSCC-
T ss_pred HHhCCCcceeeEEecCCCCCCcCCHHHHHHHHHHHhcCCCcEEEEECCCcCC-CCceeeeEEEecCccccccccCccccc
Confidence 34556778899997332 455556667778999999999997543 57899999998764310
Q ss_pred ---C-----------c-cceeeEeeceeeeccchhHHHHHHHhhhCCCCCCChhhhhHhhHHHHHHHHHHHHHHHHHHHH
Q 026489 88 ---G-----------I-PQLIFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHH 152 (238)
Q Consensus 88 ---g-----------~-~~~~F~~ip~~I~t~EaErIgVd~l~~~~~~~~~~~~~~l~~~l~~~~~al~~L~~rL~~i~~ 152 (238)
| . ....|.++++++...+.|+..++.+.+..-. ..-.+.+-......+.+.+.++++.+.+
T Consensus 175 s~~~~~~~~~~~~~~~~~~~~yy~l~i~~~ks~le~~~L~~L~~~~w~----~~l~~~~~~~~~~~~~~~i~~m~~~~~~ 250 (306)
T 4b4t_V 175 SNTGLLNKANIQALIHGLNRHYYSLNIDYHKTAKETKMLMNLHKEQWQ----SGLKMYDYEEKEESNLAATKSMVKIAEQ 250 (306)
T ss_dssp ---------------------CEEECSCCCCCSSCTHHHHHHHHC--------------CHHHHHHHHHHHHHHSSCHHH
T ss_pred ccccccCchhhhhhhccccceEEEeeeEEEeCcHHHHHHHHHHhcccc----cccccCcHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 1256999999999999999999999985322 1112334466778888999999999999
Q ss_pred HHHHhhcCCCCCChHHHHHHHHHHhcCCCCCh-----HHHHHHHHHhhch
Q 026489 153 YLVAMQKGEIPCENSLLRQVSSLLRRLPAIES-----EKFQDDFLMEYND 197 (238)
Q Consensus 153 YL~~V~~G~~~~d~~IlR~l~~l~~~lP~~~~-----~~f~~~~~~~~~D 197 (238)
|.+.|.+|+...+.++. ...+|+.++ +.++..++++..|
T Consensus 251 y~k~v~~e~~~~~~~l~------~~~vgk~dp~~~l~~~~~~l~~~ni~~ 294 (306)
T 4b4t_V 251 YSKRIEEEKELTEEELK------TRYVGRQDPKKHLSETADETLENNIVS 294 (306)
T ss_dssp HHHHHHHHHHHHHHHHH------HTCSCSSCCSSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHccccCCHHHHH------hhccCccChHHHHHHHHHHHHHHHHHH
Confidence 99999998866666654 467888876 5567777766665
No 4
>4e0q_A COP9 signalosome complex subunit 6; MPN (MPR1P and PAD1P N-terminal) domain, unknown function; 2.50A {Drosophila melanogaster}
Probab=98.89 E-value=1.3e-10 Score=93.36 Aligned_cols=57 Identities=26% Similarity=0.367 Sum_probs=42.8
Q ss_pred ceeecCCeeecccc----CCCCcHHHHHHHhccCCCceEEEEcCCCCCCCCCCCeeEEEEee
Q 026489 26 TSIYLDGTPQGVML----KNPICTSIKLYLMDINESPVYVLLNPSINPAQKDLPVTIFESEL 83 (238)
Q Consensus 26 ~~~~~~~~~~g~~~----~~~~~~~IH~~~~~~~~~PI~L~vD~~~~~~~~~LPi~aYes~~ 83 (238)
++|+++...+|||+ .++++..||++|+++|++||+|++||..+. .++||++||+++.
T Consensus 80 k~v~~~e~iVGWY~s~~~~~~~d~~i~~~~~~~~~~pV~L~~Dp~~~~-~g~Lp~~ay~sv~ 140 (141)
T 4e0q_A 80 KQVFSDLDFIGWYTTGDNPTADDIKIQRQIAAINECPIMLQLNPLSRS-VDHLPLKLFESLI 140 (141)
T ss_dssp HHHSTTCEEEEEEEEEC-------CHHHHHHHTTCCCEEEEESCSCCC-CTTHHHHHHCC--
T ss_pred HHhCCCccEEEEEeCCCCCCcchHHHHHHHHHHCCCCEEEEECCCccC-CCeEEEEEEEEEc
Confidence 56777888888887 356888999999999999999999998763 3579999999863
No 5
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=73.86 E-value=7.7 Score=22.27 Aligned_cols=29 Identities=17% Similarity=0.359 Sum_probs=23.9
Q ss_pred hhHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026489 128 QLAAHLTGIHSAIKMLNSRIRVLHHYLVA 156 (238)
Q Consensus 128 ~l~~~l~~~~~al~~L~~rL~~i~~YL~~ 156 (238)
.+..++..+..-+++|++|++.+.+-|++
T Consensus 3 rlee~~r~l~~ivq~lq~r~drle~tvqa 31 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLEETVQA 31 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46677778888899999999999888775
No 6
>2znr_A AMSH-like protease; metal binding protein, alternative splicing, hydrolase, metal-binding, metalloprotease, UBL conjugation pathway, zinc; 1.20A {Homo sapiens} PDB: 2znv_A
Probab=69.93 E-value=1.9 Score=35.04 Aligned_cols=50 Identities=10% Similarity=0.007 Sum_probs=36.1
Q ss_pred cCCeeecccc--------CCCCcHHHHHHHhccCCCceEEEEcCCCCCCCCCCCeeEEEEeeee
Q 026489 30 LDGTPQGVML--------KNPICTSIKLYLMDINESPVYVLLNPSINPAQKDLPVTIFESELHV 85 (238)
Q Consensus 30 ~~~~~~g~~~--------~~~~~~~IH~~~~~~~~~PI~L~vD~~~~~~~~~LPi~aYes~~~~ 85 (238)
.+.+++|||| +++.|...|..|....+..+++++|+... .+++|...+.+
T Consensus 80 ~~l~~vGwyHSHP~~~~~pS~~Dv~tq~~yq~~~~~~v~iIvsp~~~------~~~afrl~~~g 137 (178)
T 2znr_A 80 HDLLTLGWIHTHPTQTAFLSSVDLHTHCSYQLMLPEAIAIVCSPKHK------DTGIFRLTNAG 137 (178)
T ss_dssp HTCEEEEEEEECSSSCSCCCHHHHHHHHHHHHHCTTCEEEEEEGGGT------EEEEEEECHHH
T ss_pred CCCEEEEEEeCCCCCCCCCCHHHHHHHHHHHhhcCCEEEEEEcCCCC------cceEEEEECCc
Confidence 6899999998 33356666666666667789999998642 26888776543
No 7
>3rzv_A STAM-binding protein; ubiquitin hydrolase, endosome-associated deubiquitinat enzyme, hydrolase; 1.67A {Homo sapiens} PDB: 3rzu_A
Probab=68.13 E-value=2.7 Score=35.20 Aligned_cols=51 Identities=10% Similarity=0.041 Sum_probs=37.1
Q ss_pred cCCeeecccc--------CCCCcHHHHHHHhccCCCceEEEEcCCCCCCCCCCCeeEEEEeeeee
Q 026489 30 LDGTPQGVML--------KNPICTSIKLYLMDINESPVYVLLNPSINPAQKDLPVTIFESELHVI 86 (238)
Q Consensus 30 ~~~~~~g~~~--------~~~~~~~IH~~~~~~~~~PI~L~vD~~~~~~~~~LPi~aYes~~~~~ 86 (238)
.+.+++|||| ++..|...|..|....+.-|.+++|+.- -++.+|...+.|.
T Consensus 113 ~~l~~vGWyHSHP~~~~~pS~~Dl~tq~~~q~~~~~~I~IVvsP~~------~~lgaFrLtp~G~ 171 (211)
T 3rzv_A 113 QGLITLGWIHTHPTQTAFLSSVDLHTHCSYQMMLPESVAIVCSPKF------QETGFFKLTDHGL 171 (211)
T ss_dssp HTCEEEEEEEECTTSCSCCCHHHHHHHHHHHHHCTTCEEEEEETTT------TEEEEEEECHHHH
T ss_pred CCCEEEEEEeCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEEcCCC------CeeeEEEeccchh
Confidence 6889999998 2335666666666666777999999752 2688999877654
No 8
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=49.11 E-value=1.1e+02 Score=24.93 Aligned_cols=88 Identities=13% Similarity=0.232 Sum_probs=62.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC--ChHHHHHHHHHHhcCCCCChHHHHHHHHHh-hchHHHHHHHHHHH
Q 026489 132 HLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPC--ENSLLRQVSSLLRRLPAIESEKFQDDFLME-YNDTLLIAYLAMFT 208 (238)
Q Consensus 132 ~l~~~~~al~~L~~rL~~i~~YL~~V~~G~~~~--d~~IlR~l~~l~~~lP~~~~~~f~~~~~~~-~~D~lmvsyLs~Lt 208 (238)
.+....+.+..++..++++.+-|.....|...+ |.+++..|.+.|.+. ...+.+..... -+|- +|+.+-
T Consensus 70 ~~~k~~~eLe~V~~nv~LL~EML~~~~pg~~~~~~d~Ell~eL~~~Ck~~----qp~i~~Li~e~~ddee----~L~elL 141 (186)
T 1oxz_A 70 KISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERM----RPTLFRLASDTEDNDE----ALAEIL 141 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSSSCSCTTTTHHHHHHHHHHHHHH----HHHHHHHHHHCCSCHH----HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccccHHHHHHHHHHHHHH----HHHHHHHHHHccCCHH----HHHHHH
Confidence 445666778888888888888898888887544 899999999999876 34566666543 3452 456666
Q ss_pred HHHHHHHHHHHHHhhhhhc
Q 026489 209 NCASTMNELVDKFNTAYDR 227 (238)
Q Consensus 209 k~~~al~el~~Kl~~~~~~ 227 (238)
+.--.||.+..|+..+..+
T Consensus 142 ~~ND~Ln~vl~kY~~~~~g 160 (186)
T 1oxz_A 142 QANDNLTQVINLYKQLVRG 160 (186)
T ss_dssp HHHHHHHHHHHHHTTHHHH
T ss_pred HhhHHHHHHHHHHHHHhcC
Confidence 6677777888887665444
No 9
>1wrd_A TOM1, target of MYB protein 1; three-helix bundle, ubiquitin-binding protein, protein trans signaling protein complex; 1.75A {Homo sapiens} SCOP: a.7.8.1
Probab=48.02 E-value=77 Score=23.05 Aligned_cols=87 Identities=13% Similarity=0.237 Sum_probs=54.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCCChHHHHHHHHHHhcCCCCChHHHHHHHHHhhchHHHHHHHHHHHHH
Q 026489 132 HLTGIHSAIKMLNSRIRVLHHYLVAMQKGE-IPCENSLLRQVSSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNC 210 (238)
Q Consensus 132 ~l~~~~~al~~L~~rL~~i~~YL~~V~~G~-~~~d~~IlR~l~~l~~~lP~~~~~~f~~~~~~~~~D~lmvsyLs~Ltk~ 210 (238)
++......+...+..++++.+-|.....|+ .+.|.+++..|.+.|.+. .+.+-+.....-+|- +|+.+-+.
T Consensus 7 q~~k~~~el~~v~~n~~lL~EML~~~~p~~~~~~~~el~~eL~~~c~~~----qp~i~~li~~~~dee----~l~~lL~~ 78 (103)
T 1wrd_A 7 QIGKLRSELEMVSGNVRVMSEMLTELVPTQAEPADLELLQELNRTCRAM----QQRVLELIPQIANEQ----LTEELLIV 78 (103)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHSCTTTCCHHHHHHHHHHHHHHHHH----HHHHHHHHHHCCCHH----HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHH----HHHHHHHHhccCCHH----HHHHHHHh
Confidence 344455555566666666666666666655 446779999999988866 345666666665663 45555555
Q ss_pred HHHHHHHHHHHhhhhh
Q 026489 211 ASTMNELVDKFNTAYD 226 (238)
Q Consensus 211 ~~al~el~~Kl~~~~~ 226 (238)
=-.|+.+..|+..+..
T Consensus 79 ND~L~~vl~ry~~~~~ 94 (103)
T 1wrd_A 79 NDNLNNVFLRHERFER 94 (103)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhc
Confidence 6666677777765543
No 10
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=39.70 E-value=1.4e+02 Score=23.58 Aligned_cols=89 Identities=12% Similarity=0.219 Sum_probs=59.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-CC-ChHHHHHHHHHHhcCCCCChHHHHHHHHHh-hchHHHHHHHHHHH
Q 026489 132 HLTGIHSAIKMLNSRIRVLHHYLVAMQKGEI-PC-ENSLLRQVSSLLRRLPAIESEKFQDDFLME-YNDTLLIAYLAMFT 208 (238)
Q Consensus 132 ~l~~~~~al~~L~~rL~~i~~YL~~V~~G~~-~~-d~~IlR~l~~l~~~lP~~~~~~f~~~~~~~-~~D~lmvsyLs~Lt 208 (238)
.+....+.+..++..++++.+-|.....|+. +. |.+++..|.+.|.+.- +.+.+..... -+|- +|+.+-
T Consensus 54 ~~~k~~seLe~V~~nv~LL~EML~~~~pg~~~~~~d~Ell~eL~~~Ck~~q----p~i~~Li~e~~ddee----~L~elL 125 (158)
T 1naf_A 54 KISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMR----PTLFRLASDTEDNDE----ALAEIL 125 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTC-----CCTTHHHHHHHHHHTHH----HHHHHHHHHCCSCHH----HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcccHHHHHHHHHHHHHHH----HHHHHHHHHccCCHH----HHHHHH
Confidence 3455666788888888888888888887774 44 8899999999998763 4566666543 3452 456666
Q ss_pred HHHHHHHHHHHHHhhhhhcC
Q 026489 209 NCASTMNELVDKFNTAYDRH 228 (238)
Q Consensus 209 k~~~al~el~~Kl~~~~~~~ 228 (238)
+.--.|+.+..|+..+..++
T Consensus 126 ~~ND~Ln~vl~kY~~~~~g~ 145 (158)
T 1naf_A 126 QANDNLTQVINLYKQLVRGE 145 (158)
T ss_dssp HHHHHHHHHHHHHHHHHC--
T ss_pred HhhHHHHHHHHHHHHHhcCC
Confidence 66777778888887665543
No 11
>1wr6_A ADP-ribosylation factor binding protein GGA3; three-helix bundle, clathrin coat adaptor protein, protein transport/signaling protein complex; 2.60A {Homo sapiens} SCOP: a.7.8.1 PDB: 1yd8_G
Probab=37.94 E-value=32 Score=25.69 Aligned_cols=83 Identities=10% Similarity=0.204 Sum_probs=51.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-CCChHHHHHHHHHHhcCCCCChHHHHHHHHHhh-chHHHHHHHHHHH
Q 026489 131 AHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEI-PCENSLLRQVSSLLRRLPAIESEKFQDDFLMEY-NDTLLIAYLAMFT 208 (238)
Q Consensus 131 ~~l~~~~~al~~L~~rL~~i~~YL~~V~~G~~-~~d~~IlR~l~~l~~~lP~~~~~~f~~~~~~~~-~D~lmvsyLs~Lt 208 (238)
+.|+.+.+-++-|.+| |.....|.. +.|.+++..|.+.|.+.- +.+.+...... +| .+|+.+-
T Consensus 8 ~eLe~V~~n~~LL~EM-------L~~~~pg~~~~~d~ell~ELy~~ck~~q----p~i~kL~~e~~ddd----e~l~elL 72 (111)
T 1wr6_A 8 HTLEEVNNNVRLLSEM-------LLHYSQEDSSDGDRELMKELFDQCENKR----RTLFKLASETEDND----NSLGDIL 72 (111)
T ss_dssp CCHHHHHHHHHHHHHH-------TTTCCTTTSCHHHHHHHHHHHHHHHHHH----HHHHHHHHTCCTTC----SSHHHHH
T ss_pred HHHHHHHHHHHHHHHH-------HHhcCCCCCCcchHHHHHHHHHHHHHHH----HHHHHHHHHhccCH----HHHHHHH
Confidence 3444555555444444 445555554 566789999999998763 45666554433 34 2456677
Q ss_pred HHHHHHHHHHHHHhhhhhcC
Q 026489 209 NCASTMNELVDKFNTAYDRH 228 (238)
Q Consensus 209 k~~~al~el~~Kl~~~~~~~ 228 (238)
+.--.||.+..|+..+..++
T Consensus 73 ~~ND~ln~vi~rY~~~~~g~ 92 (111)
T 1wr6_A 73 QASDNLSRVINSYKTIIEGQ 92 (111)
T ss_dssp HHHHHHHHHHTHHHHTTTCC
T ss_pred HHhHHHHHHHHHHHHHhcCC
Confidence 77777888888887665443
No 12
>1o3x_A ADP-ribosylation factor binding protein GGA1; protein transport; 2.10A {Homo sapiens} SCOP: a.7.8.1 PDB: 1nwm_X 1x79_A
Probab=35.11 E-value=1.5e+02 Score=22.75 Aligned_cols=89 Identities=12% Similarity=0.228 Sum_probs=60.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC--ChHHHHHHHHHHhcCCCCChHHHHHHHHHh-hchHHHHHHHHHHH
Q 026489 132 HLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPC--ENSLLRQVSSLLRRLPAIESEKFQDDFLME-YNDTLLIAYLAMFT 208 (238)
Q Consensus 132 ~l~~~~~al~~L~~rL~~i~~YL~~V~~G~~~~--d~~IlR~l~~l~~~lP~~~~~~f~~~~~~~-~~D~lmvsyLs~Lt 208 (238)
.+....+.+..++..++++-+-|.....|+..+ |.+++..|.+.|.+.- +.+.+..... -+|- +|+.+-
T Consensus 45 ~~~k~~~eLe~v~~n~~LL~EML~~~~p~~~~~~~d~Ell~eL~~~ck~~q----p~i~~li~e~~ddee----~l~elL 116 (140)
T 1o3x_A 45 KISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMR----PTLFRLASDTEDNDE----ALAEIL 116 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCCCHHHHHHHHHHHHHHHHHH----HHHHHHHTTCTTCHH----HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccHHHHHHHHHHHHHHH----HHHHHHHHHccCCHH----HHHHHH
Confidence 445566677777778888888888888887555 6899999999998763 4555555433 3442 345555
Q ss_pred HHHHHHHHHHHHHhhhhhcC
Q 026489 209 NCASTMNELVDKFNTAYDRH 228 (238)
Q Consensus 209 k~~~al~el~~Kl~~~~~~~ 228 (238)
+.--.+|.+..|+..+..+.
T Consensus 117 ~~ND~ln~vl~kY~~~~~g~ 136 (140)
T 1o3x_A 117 QANDNLTQVINLYKQLVRGE 136 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHTC
T ss_pred HhhHHHHHHHHHHHHHhcCC
Confidence 66666777777776665443
No 13
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=34.37 E-value=87 Score=24.38 Aligned_cols=72 Identities=6% Similarity=0.155 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHhcCCCCChHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026489 144 NSRIRVLHHYLVAMQKGEIPCENSLLRQVSSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDKFN 222 (238)
Q Consensus 144 ~~rL~~i~~YL~~V~~G~~~~d~~IlR~l~~l~~~lP~~~~~~f~~~~~~~~~D~lmvsyLs~Ltk~~~al~el~~Kl~ 222 (238)
..-++.|..+|+-..+|.+ |+..|-+.|.+++..+| ++.+.+.. ..---.|.||..--+...+...+++++-
T Consensus 60 ~giL~~l~~WL~PLpDgsL-P~~~Ir~~lL~~L~~lP-I~~e~Lk~-----SglGkvv~~l~k~~~et~~nk~la~~Li 131 (145)
T 2xpp_A 60 EGILDEIKGWLEPLPDKSM-PNIKIRKRLLDVLKTMK-IHKEHLVT-----SGVGKIVYFYSINPKESKEVRASAKALV 131 (145)
T ss_dssp TTHHHHHHHHHSCCTTSCC-CCHHHHHHHHHHHHTSC-CCHHHHHH-----HCHHHHHHHHHHCTTSCHHHHHHHHHHH
T ss_pred cCHHHHHHHHhCcCCCCCC-CCHHHHHHHHHHHHHCC-CCHHHhhc-----CCCCcchhhhhcCCccCHHHHHHHHHHH
Confidence 4557888999998888854 57999999999999999 76554432 2333445566655555444555555553
No 14
>3qwg_A ESX-1 secretion-associated regulator ESPR; N-terminal helix-turn-helix motif, transcription factor, transcription; 1.99A {Mycobacterium tuberculosis} PDB: 3qf3_A 3qyx_A
Probab=32.47 E-value=47 Score=24.80 Aligned_cols=32 Identities=13% Similarity=0.256 Sum_probs=27.3
Q ss_pred HHHHHHHHhhcCCC-CCChHHHHHHHHHHhcCC
Q 026489 149 VLHHYLVAMQKGEI-PCENSLLRQVSSLLRRLP 180 (238)
Q Consensus 149 ~i~~YL~~V~~G~~-~~d~~IlR~l~~l~~~lP 180 (238)
.=..|+..+..|+. .|+.+.+..|++.+.--|
T Consensus 41 iS~s~is~iE~G~r~~Ps~~~l~~iA~~f~V~~ 73 (123)
T 3qwg_A 41 MSAPYLSQLRSGNRTNPSGATMAALANFFRIKA 73 (123)
T ss_dssp CCHHHHHHHHHTSSCCCCHHHHHHHHHHTTSCT
T ss_pred cCHHHHHHHHcCCCCCCCHHHHHHHHHHhCCCH
Confidence 55689999999997 899999999999987554
No 15
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=29.23 E-value=42 Score=20.79 Aligned_cols=37 Identities=14% Similarity=0.151 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHh
Q 026489 141 KMLNSRIRVLHHYLVAMQKGEIPCENSLLRQVSSLLR 177 (238)
Q Consensus 141 ~~L~~rL~~i~~YL~~V~~G~~~~d~~IlR~l~~l~~ 177 (238)
+.|-.++..=..++..+..|+..++.+.+..|.+.+.
T Consensus 18 ~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~i~~~l~ 54 (66)
T 2xi8_A 18 SELAALLEVSRQTINGIEKNKYNPSLQLALKIAYYLN 54 (66)
T ss_dssp HHHHHHHTSCHHHHHHHHTTSCCCCHHHHHHHHHHTT
T ss_pred HHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHC
Confidence 4455566666788889999999999998888888765
No 16
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=29.14 E-value=50 Score=21.79 Aligned_cols=38 Identities=8% Similarity=0.090 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHhc
Q 026489 141 KMLNSRIRVLHHYLVAMQKGEIPCENSLLRQVSSLLRR 178 (238)
Q Consensus 141 ~~L~~rL~~i~~YL~~V~~G~~~~d~~IlR~l~~l~~~ 178 (238)
..|-.++..=..+|..+.+|+..++.+.+..|.+++.-
T Consensus 29 ~~lA~~~gvs~~~is~~e~g~~~~~~~~~~~ia~~l~v 66 (80)
T 3kz3_A 29 ESVADKMGMGQSAVAALFNGINALNAYNAALLAKILKV 66 (80)
T ss_dssp HHHHHHTTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTS
T ss_pred HHHHHHhCcCHHHHHHHHcCCCCCCHHHHHHHHHHhCC
Confidence 44566666667888999999999999999999998873
No 17
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=26.61 E-value=46 Score=22.15 Aligned_cols=39 Identities=21% Similarity=0.346 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcC-CCCCChHHHHHHHHHHhc
Q 026489 140 IKMLNSRIRVLHHYLVAMQKG-EIPCENSLLRQVSSLLRR 178 (238)
Q Consensus 140 l~~L~~rL~~i~~YL~~V~~G-~~~~d~~IlR~l~~l~~~ 178 (238)
.+.|-.++..=..||.++..| +..++.+.+..|.+++.-
T Consensus 26 q~elA~~~gis~~~is~~E~G~~~~p~~~~l~~ia~~l~v 65 (78)
T 3qq6_A 26 LSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDV 65 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSCCCCBHHHHHHHHHHHTC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHHHHCc
Confidence 455666777778899999999 789999999999988763
No 18
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=26.03 E-value=43 Score=22.11 Aligned_cols=37 Identities=11% Similarity=0.108 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHh
Q 026489 141 KMLNSRIRVLHHYLVAMQKGEIPCENSLLRQVSSLLR 177 (238)
Q Consensus 141 ~~L~~rL~~i~~YL~~V~~G~~~~d~~IlR~l~~l~~ 177 (238)
+.|-.++..=..|+..+..|+..++.+.+..|.+++.
T Consensus 28 ~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~ia~~l~ 64 (82)
T 3s8q_A 28 EDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLE 64 (82)
T ss_dssp HHHHHHHTCCHHHHHHHHTTCCCCBHHHHHHHHHHTT
T ss_pred HHHHHHhCcCHHHHHHHHCCCCCCCHHHHHHHHHHHC
Confidence 4455666667789999999999999999988888875
No 19
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=24.71 E-value=53 Score=20.98 Aligned_cols=38 Identities=16% Similarity=0.121 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHh
Q 026489 140 IKMLNSRIRVLHHYLVAMQKGEIPCENSLLRQVSSLLR 177 (238)
Q Consensus 140 l~~L~~rL~~i~~YL~~V~~G~~~~d~~IlR~l~~l~~ 177 (238)
.+.|-.++..=..++..+..|+..++.+.+..|.+.+.
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~ia~~l~ 58 (76)
T 1adr_A 21 QAALGKMVGVSNVAISQWERSETEPNGENLLALSKALQ 58 (76)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHTT
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHC
Confidence 44566666666788999999999899988888888765
No 20
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=24.56 E-value=41 Score=21.34 Aligned_cols=38 Identities=5% Similarity=0.072 Sum_probs=29.4
Q ss_pred HHHHHHHH--HHHHHHHHhhcCCCCCChHHHHHHHHHHhc
Q 026489 141 KMLNSRIR--VLHHYLVAMQKGEIPCENSLLRQVSSLLRR 178 (238)
Q Consensus 141 ~~L~~rL~--~i~~YL~~V~~G~~~~d~~IlR~l~~l~~~ 178 (238)
+.|-.++. .=..++..+..|+..++.+.+..|.+.+.-
T Consensus 25 ~~lA~~~g~~is~~~i~~~e~g~~~~~~~~l~~la~~l~v 64 (71)
T 2ewt_A 25 HGVEEKSQGRWKAVVVGSYERGDRAVTVQRLAELADFYGV 64 (71)
T ss_dssp HHHHHHTTTSSCHHHHHHHHHTCSCCCHHHHHHHHHHHTS
T ss_pred HHHHHHHCCcCCHHHHHHHHCCCCCCCHHHHHHHHHHHCc
Confidence 44555555 556788899999999999999999888764
No 21
>3r1f_A ESX-1 secretion-associated regulator ESPR; helix-turn-helix, transcription factor, helix-turn-helix transcription factor; 2.50A {Mycobacterium tuberculosis}
Probab=24.45 E-value=84 Score=23.69 Aligned_cols=41 Identities=10% Similarity=0.207 Sum_probs=32.4
Q ss_pred HHHHHHHHH-----HHHHHHHHhhcCCC-CCChHHHHHHHHHHhcCC
Q 026489 140 IKMLNSRIR-----VLHHYLVAMQKGEI-PCENSLLRQVSSLLRRLP 180 (238)
Q Consensus 140 l~~L~~rL~-----~i~~YL~~V~~G~~-~~d~~IlR~l~~l~~~lP 180 (238)
.+.|-.++. .=..|+..+..|+. .|+.+.+..|++.+.--|
T Consensus 29 ~~elA~~~~~~G~~is~s~is~~E~G~r~~Ps~~~l~~iA~~f~V~~ 75 (135)
T 3r1f_A 29 SAEVIAALKAEGITMSAPYLSQLRSGNRTNPSGATMAALANFFRIKA 75 (135)
T ss_dssp HHHHHHHHHTTTCCCCHHHHHHHHHTSSCCCCHHHHHHHHHHHTSCT
T ss_pred HHHHHHHHcccCCCcCHHHHHHHHCCCCCCCCHHHHHHHHHHhCCCH
Confidence 344445555 66789999999997 899999999999987665
No 22
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=24.33 E-value=70 Score=20.98 Aligned_cols=38 Identities=11% Similarity=0.092 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHhc
Q 026489 141 KMLNSRIRVLHHYLVAMQKGEIPCENSLLRQVSSLLRR 178 (238)
Q Consensus 141 ~~L~~rL~~i~~YL~~V~~G~~~~d~~IlR~l~~l~~~ 178 (238)
+.|-.++..=..++..+..|+..++.+.+..|.+++.-
T Consensus 31 ~elA~~~gis~~~is~~e~g~~~~~~~~l~~l~~~l~~ 68 (83)
T 3f6w_A 31 KELAARLGRPQSFVSKTENAERRLDVIEFMDFCRGIGT 68 (83)
T ss_dssp HHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTC
T ss_pred HHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHcCC
Confidence 44556666667899999999999999999988888753
No 23
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=24.04 E-value=51 Score=20.49 Aligned_cols=38 Identities=16% Similarity=0.121 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHh
Q 026489 140 IKMLNSRIRVLHHYLVAMQKGEIPCENSLLRQVSSLLR 177 (238)
Q Consensus 140 l~~L~~rL~~i~~YL~~V~~G~~~~d~~IlR~l~~l~~ 177 (238)
.+.|-.++..=..++..+..|+..++.+.+..|.+.+.
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~i~~~l~ 58 (68)
T 2r1j_L 21 QAALGKMVGVSNVAISQWERSETEPNGENLLALSKALQ 58 (68)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSSCCBHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCCCCHHHHHHHHHHhC
Confidence 34566666666788999999998889888888877764
No 24
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=23.83 E-value=56 Score=23.01 Aligned_cols=37 Identities=11% Similarity=0.108 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHh
Q 026489 141 KMLNSRIRVLHHYLVAMQKGEIPCENSLLRQVSSLLR 177 (238)
Q Consensus 141 ~~L~~rL~~i~~YL~~V~~G~~~~d~~IlR~l~~l~~ 177 (238)
+.|-.++..=..||..+..|+..++.+.+..|.+++.
T Consensus 45 ~elA~~~gis~~~is~iE~G~~~ps~~~l~~ia~~l~ 81 (99)
T 3g5g_A 45 EDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLE 81 (99)
T ss_dssp HHHHHHHTCCHHHHHHHHTTCSCCBHHHHHHHHHHTT
T ss_pred HHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHHC
Confidence 3455566667789999999999999999998888875
No 25
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=23.81 E-value=58 Score=20.93 Aligned_cols=40 Identities=8% Similarity=-0.008 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHhc
Q 026489 139 AIKMLNSRIRVLHHYLVAMQKGEIPCENSLLRQVSSLLRR 178 (238)
Q Consensus 139 al~~L~~rL~~i~~YL~~V~~G~~~~d~~IlR~l~~l~~~ 178 (238)
+.+.|-.++..=..++..+..|+..++.+.+..|.+++.-
T Consensus 23 sq~~lA~~~gis~~~is~~e~g~~~~~~~~l~~ia~~l~v 62 (73)
T 3omt_A 23 TNLWLTETLDKNKTTVSKWCTNDVQPSLETLFDIAEALNV 62 (73)
T ss_dssp CHHHHHHHTTCCHHHHHHHHTTSSCCCHHHHHHHHHHHTS
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCc
Confidence 4455667777778889999999999999999999998864
No 26
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=23.80 E-value=61 Score=20.55 Aligned_cols=38 Identities=11% Similarity=0.110 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHhc
Q 026489 141 KMLNSRIRVLHHYLVAMQKGEIPCENSLLRQVSSLLRR 178 (238)
Q Consensus 141 ~~L~~rL~~i~~YL~~V~~G~~~~d~~IlR~l~~l~~~ 178 (238)
+.|-.++..=..++..+..|+..++.+.+..|...+..
T Consensus 30 ~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~l~~~l~~ 67 (74)
T 1y7y_A 30 ETLAFLSGLDRSYVGGVERGQRNVSLVNILKLATALDI 67 (74)
T ss_dssp HHHHHHHTCCHHHHHHHHTTCSCCBHHHHHHHHHHTTS
T ss_pred HHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHhCc
Confidence 44556666667889999999999999988888887753
No 27
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=23.38 E-value=43 Score=21.90 Aligned_cols=38 Identities=8% Similarity=-0.011 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHh
Q 026489 140 IKMLNSRIRVLHHYLVAMQKGEIPCENSLLRQVSSLLR 177 (238)
Q Consensus 140 l~~L~~rL~~i~~YL~~V~~G~~~~d~~IlR~l~~l~~ 177 (238)
.+.|-.++..=..+|..+..|+..++.+.+..|.+++.
T Consensus 18 q~~lA~~~gis~~~i~~~e~g~~~p~~~~l~~ia~~l~ 55 (77)
T 2k9q_A 18 AKSVAEEMGISRQQLCNIEQSETAPVVVKYIAFLRSKG 55 (77)
T ss_dssp HHHHHHHHTSCHHHHHHHHTCCSCCHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhC
Confidence 45566677777789999999998888888887777764
No 28
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=23.28 E-value=71 Score=22.88 Aligned_cols=40 Identities=8% Similarity=0.158 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHhc
Q 026489 139 AIKMLNSRIRVLHHYLVAMQKGEIPCENSLLRQVSSLLRR 178 (238)
Q Consensus 139 al~~L~~rL~~i~~YL~~V~~G~~~~d~~IlR~l~~l~~~ 178 (238)
+...|-.++..=..++..+..|+..++.+.+..|.+.+..
T Consensus 29 tq~eLA~~lGis~~~is~ie~G~~~~s~~~~~kla~~lgv 68 (104)
T 3trb_A 29 SANQLAKHLAIPTNRVTAILNGARSITADTALRLAKFFGT 68 (104)
T ss_dssp CHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCc
Confidence 4556777788888999999999999999999999998864
No 29
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=23.19 E-value=60 Score=23.18 Aligned_cols=39 Identities=13% Similarity=0.139 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHhcC
Q 026489 141 KMLNSRIRVLHHYLVAMQKGEIPCENSLLRQVSSLLRRL 179 (238)
Q Consensus 141 ~~L~~rL~~i~~YL~~V~~G~~~~d~~IlR~l~~l~~~l 179 (238)
+.|-.++..-..||..+..|+..++.+.+..|.+++.--
T Consensus 38 ~elA~~~gis~~~is~~E~G~~~p~~~~l~~ia~~l~v~ 76 (114)
T 3vk0_A 38 EELARQCGLDRTYVSAVERKRWNIALSNIEKMAAALGVA 76 (114)
T ss_dssp HHHHHHHTCCHHHHHHHTTTCCCCCHHHHHHHHHHHTSC
T ss_pred HHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHhCCC
Confidence 456666667788999999999999999999999988643
No 30
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=22.87 E-value=78 Score=20.17 Aligned_cols=39 Identities=13% Similarity=0.097 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHhc
Q 026489 140 IKMLNSRIRVLHHYLVAMQKGEIPCENSLLRQVSSLLRR 178 (238)
Q Consensus 140 l~~L~~rL~~i~~YL~~V~~G~~~~d~~IlR~l~~l~~~ 178 (238)
.+.|-.++..=..++..+..|+..++.+.+..|.+.+.-
T Consensus 26 ~~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~ia~~l~~ 64 (76)
T 3bs3_A 26 NRWLAEQMGKSENTISRWCSNKSQPSLDMLVKVAELLNV 64 (76)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSSCCCHHHHHHHHHHHTS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCc
Confidence 355666666667888999999999999999989888754
No 31
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=21.50 E-value=74 Score=20.41 Aligned_cols=39 Identities=18% Similarity=0.135 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCC-CCChHHHHHHHHHHhc
Q 026489 140 IKMLNSRIRVLHHYLVAMQKGEI-PCENSLLRQVSSLLRR 178 (238)
Q Consensus 140 l~~L~~rL~~i~~YL~~V~~G~~-~~d~~IlR~l~~l~~~ 178 (238)
.+.|-.++..=..++..+..|+. .++.+.+..|.+.+.-
T Consensus 23 q~~lA~~~gis~~~i~~~e~g~~~~~~~~~l~~ia~~l~~ 62 (78)
T 3b7h_A 23 INRVATLAGLNQSTVNAMFEGRSKRPTITTIRKVCGTLGI 62 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHCTTCCCCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHHHcCC
Confidence 34566666667788999999998 8999999888888753
No 32
>2kks_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; NMR {Desulfitobacterium hafniense}
Probab=20.94 E-value=1.1e+02 Score=23.08 Aligned_cols=60 Identities=10% Similarity=0.031 Sum_probs=36.0
Q ss_pred cCCeeecccc------CCCCcHHHHHHHhccCCCceEEEEcCCCCCCCCCCCeeEEEEeeeeeCCccceeeEeeceeeec
Q 026489 30 LDGTPQGVML------KNPICTSIKLYLMDINESPVYVLLNPSINPAQKDLPVTIFESELHVIEGIPQLIFVRSSYTIET 103 (238)
Q Consensus 30 ~~~~~~g~~~------~~~~~~~IH~~~~~~~~~PI~L~vD~~~~~~~~~LPi~aYes~~~~~~g~~~~~F~~ip~~I~t 103 (238)
.+...+|||| +.|...-++. +. ....+++++.+.. ++...+++|... ...|.+++..|..
T Consensus 72 ~g~~ivG~~HSHP~~~~~PS~~D~~~--~~-~~~~~~lIvs~~~---~~~~~~~af~~~--------~~~~~e~~i~~~~ 137 (146)
T 2kks_A 72 NGWVMLGNFHSHPATPARPSAEDKRL--AF-DPSLSYLIISLAE---PQKPVCKSFLIK--------KDGVDEEEIILKE 137 (146)
T ss_dssp HTCEEEEEEEEESSSCSSCCHHHHTT--CC-SSSCEEEEEECSC---SSSCEEEEEEEC--------SSCEEEECEEEES
T ss_pred CCCEEEEEEeCCCcCCCCCCHHHHHh--hh-cCCCeEEEEEccC---CCceEEEEEEEe--------CCeEEEEEEEEeh
Confidence 4568899998 2333333332 11 1335789997642 234568899773 2248888887753
No 33
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=20.91 E-value=37 Score=25.36 Aligned_cols=51 Identities=18% Similarity=0.297 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCh------HHHHHHHHHHhcCCCCChHHHHHHHHH
Q 026489 139 AIKMLNSRIRVLHHYLVAMQKGEIPCEN------SLLRQVSSLLRRLPAIESEKFQDDFLM 193 (238)
Q Consensus 139 al~~L~~rL~~i~~YL~~V~~G~~~~d~------~IlR~l~~l~~~lP~~~~~~f~~~~~~ 193 (238)
+.+.|-+++..=..|+.++.+|+..+.+ ..++.+++++. ++.+++-..+..
T Consensus 18 tq~elA~~~gis~~~is~iE~g~~~~~~~~~~~~~~l~~ia~~L~----v~~~~l~~~~~~ 74 (130)
T 3fym_A 18 TLTELEQRTGIKREMLVHIENNEFDQLPNKNYSEGFIRKYASVVN----IEPNQLIQAHQD 74 (130)
T ss_dssp CHHHHHHHHCCCHHHHHHHHTTCGGGSSSGGGHHHHHHHHHHHTT----CCHHHHHHHTTT
T ss_pred CHHHHHHHHCcCHHHHHHHHCCCCCCCchhhhHHHHHHHHHHHhC----CCHHHHHHHHHH
Confidence 4556777778888999999999976655 66888877775 334444444443
No 34
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=20.71 E-value=63 Score=20.72 Aligned_cols=38 Identities=11% Similarity=0.198 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHh
Q 026489 140 IKMLNSRIRVLHHYLVAMQKGEIPCENSLLRQVSSLLR 177 (238)
Q Consensus 140 l~~L~~rL~~i~~YL~~V~~G~~~~d~~IlR~l~~l~~ 177 (238)
.+.|-.++..=..++..+..|+..++.+.+..|...+.
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~la~~l~ 63 (77)
T 2b5a_A 26 QEELADLAGLHRTYISEVERGDRNISLINIHKICAALD 63 (77)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCSCCBHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHhC
Confidence 34556666666788999999999999888888888765
No 35
>3kpe_A Fusion glycoprotein F0; peptide-small-molecule complex, alpha helix, coiled-coil, EN protein, fusion protein; HET: TM3 PG4; 1.47A {Human respiratory syncytial virus} PDB: 1g2c_A
Probab=20.53 E-value=1.6e+02 Score=18.93 Aligned_cols=29 Identities=14% Similarity=0.296 Sum_probs=23.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026489 131 AHLTGIHSAIKMLNSRIRVLHHYLVAMQK 159 (238)
Q Consensus 131 ~~l~~~~~al~~L~~rL~~i~~YL~~V~~ 159 (238)
.-+..+.++++.|-..++.+++|++++..
T Consensus 18 eAV~~L~~g~~~la~Av~~iQ~~IN~~i~ 46 (51)
T 3kpe_A 18 KAVVSLSNGVSVLTSKVLDLKNYIDKQLL 46 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567888888999999999999998753
No 36
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=20.47 E-value=80 Score=21.27 Aligned_cols=40 Identities=15% Similarity=0.172 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHhcCC
Q 026489 141 KMLNSRIRVLHHYLVAMQKGEIPCENSLLRQVSSLLRRLP 180 (238)
Q Consensus 141 ~~L~~rL~~i~~YL~~V~~G~~~~d~~IlR~l~~l~~~lP 180 (238)
..|-.++..=..++..+..|+..++.+.+..|.+++.--+
T Consensus 30 ~~lA~~~gis~~~is~~e~g~~~p~~~~l~~la~~l~v~~ 69 (91)
T 1x57_A 30 KDLATKINEKPQVIADYESGRAIPNNQVLGKIERAIGLKL 69 (91)
T ss_dssp HHHHHHHTSCHHHHHHHHHTCSCCCHHHHHHHHHHHTBCC
T ss_pred HHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCcCH
Confidence 4456666666788999999998899999999999887544
No 37
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=20.06 E-value=60 Score=21.92 Aligned_cols=38 Identities=8% Similarity=0.047 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHhc
Q 026489 141 KMLNSRIRVLHHYLVAMQKGEIPCENSLLRQVSSLLRR 178 (238)
Q Consensus 141 ~~L~~rL~~i~~YL~~V~~G~~~~d~~IlR~l~~l~~~ 178 (238)
+.|-.++..=..||..+..|+..++.+.+..|.+++..
T Consensus 31 ~elA~~~gis~~~is~~E~G~~~p~~~~l~~ia~~l~v 68 (86)
T 3eus_A 31 ADLAERLDKPQSFVAKVETRERRLDVIEFAKWMAACEG 68 (86)
T ss_dssp HHHHHHTTCCHHHHHHHHTTSSCCBHHHHHHHHHHTTC
T ss_pred HHHHHHhCcCHHHHHHHHCCCCCCCHHHHHHHHHHcCC
Confidence 34556666667899999999999999999999888765
Done!