Query 026489
Match_columns 238
No_of_seqs 111 out of 456
Neff 6.6
Searched_HMMs 13730
Date Mon Mar 25 14:46:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026489.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/026489hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1lmb3_ a.35.1.2 (3:) lambda C 42.6 19 0.0014 23.5 4.8 41 140-180 28-68 (87)
2 d1wrda1 a.7.8.1 (A:215-307) Ta 41.5 43 0.0032 22.1 8.9 82 128-224 5-87 (93)
3 d2icta1 a.35.1.3 (A:8-94) Anti 37.2 8.6 0.00063 25.4 2.2 45 135-179 12-56 (87)
4 d1y9qa1 a.35.1.8 (A:4-82) Prob 36.2 12 0.00089 23.7 2.9 41 139-179 23-63 (79)
5 d2r1jl1 a.35.1.2 (L:3-68) P22 29.9 19 0.0014 21.8 2.9 38 140-177 19-56 (66)
6 d1l9la_ a.64.1.1 (A:) Granulys 29.7 59 0.0043 20.1 6.4 31 148-180 8-38 (74)
7 d2b5aa1 a.35.1.3 (A:1-77) Regu 27.5 18 0.0013 22.7 2.5 40 139-178 25-64 (77)
8 d1x57a1 a.35.1.12 (A:8-85) End 27.1 24 0.0017 22.4 3.1 39 140-178 22-60 (78)
9 d1tqga_ a.24.10.3 (A:) Chemota 26.5 33 0.0024 22.6 4.0 37 142-178 59-95 (105)
10 d2ofya1 a.35.1.3 (A:3-84) Puta 26.3 24 0.0018 22.9 3.0 39 139-177 27-66 (82)
11 d1y7ya1 a.35.1.3 (A:5-73) Rest 25.9 20 0.0015 22.0 2.5 39 139-177 24-62 (69)
12 d1wr6a1 a.7.8.1 (A:211-300) AD 25.1 47 0.0034 21.8 4.4 81 131-226 6-88 (90)
No 1
>d1lmb3_ a.35.1.2 (3:) lambda C1 repressor, DNA-binding domain {Bacteriophage lambda [TaxId: 10710]}
Probab=42.62 E-value=19 Score=23.49 Aligned_cols=41 Identities=7% Similarity=-0.006 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHhcCC
Q 026489 140 IKMLNSRIRVLHHYLVAMQKGEIPCENSLLRQVSSLLRRLP 180 (238)
Q Consensus 140 l~~L~~rL~~i~~YL~~V~~G~~~~d~~IlR~l~~l~~~lP 180 (238)
-+.|-.++..=..|+..+..|...++.+.+..|.+++.--|
T Consensus 28 q~~lA~~lgis~~~is~~E~g~~~~s~~~l~~ia~~l~v~~ 68 (87)
T d1lmb3_ 28 QESVADKMGMGQSGVGALFNGINALNAYNAALLAKILKVSV 68 (87)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTSCG
T ss_pred HHHHHHHhCccHHHHHHHHhccCCCcHHHHHHHHHHHCCCH
Confidence 35566777778899999999999999999999999987665
No 2
>d1wrda1 a.7.8.1 (A:215-307) Target of Myb protein 1, TOM1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=41.55 E-value=43 Score=22.09 Aligned_cols=82 Identities=11% Similarity=0.205 Sum_probs=50.2
Q ss_pred hhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCCChHHHHHHHHHHhcCCCCChHHHHHHHHHhhchHHHHHHHHH
Q 026489 128 QLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGE-IPCENSLLRQVSSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAM 206 (238)
Q Consensus 128 ~l~~~l~~~~~al~~L~~rL~~i~~YL~~V~~G~-~~~d~~IlR~l~~l~~~lP~~~~~~f~~~~~~~~~D~lmvsyLs~ 206 (238)
.+.++|+.+.+.++-|.++ |..+..|. -+.|.+++..+...|.+.- +.+-+.....-+| .+|+.
T Consensus 5 kl~~eLe~v~~n~~lL~eM-------L~~~~p~~~~~~d~eli~eL~~~C~~~q----~~i~~li~~~~de----e~l~~ 69 (93)
T d1wrda1 5 KLRSELEMVSGNVRVMSEM-------LTELVPTQAEPADLELLQELNRTCRAMQ----QRVLELIPQIANE----QLTEE 69 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------HHHSCTTTCCHHHHHHHHHHHHHHHHHH----HHHHHHHHHCCCH----HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHhcCCCCCCcchHHHHHHHHHHHHHHH----HHHHHHHhhcCCH----HHHHH
Confidence 3444455555555555444 45665665 4456799999988887763 3454444443333 46777
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 026489 207 FTNCASTMNELVDKFNTA 224 (238)
Q Consensus 207 Ltk~~~al~el~~Kl~~~ 224 (238)
+.+.--.|+.+..|+..+
T Consensus 70 lL~~ND~L~~vl~ry~r~ 87 (93)
T d1wrda1 70 LLIVNDNLNNVFLRHERF 87 (93)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777777777777777544
No 3
>d2icta1 a.35.1.3 (A:8-94) Antitoxin HigA {Escherichia coli [TaxId: 562]}
Probab=37.24 E-value=8.6 Score=25.36 Aligned_cols=45 Identities=4% Similarity=0.134 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHhcC
Q 026489 135 GIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENSLLRQVSSLLRRL 179 (238)
Q Consensus 135 ~~~~al~~L~~rL~~i~~YL~~V~~G~~~~d~~IlR~l~~l~~~l 179 (238)
...=+...|-.++..=..||..+.+|+..++.+++-.|.+++.--
T Consensus 12 ~~glsq~~LA~~lGvs~~~is~ie~g~~~~s~~~~~kla~~lgvs 56 (87)
T d2icta1 12 ELNVSLREFARAMEIAPSTASRLLTGKAALTPEMAIKLSVVIGSS 56 (87)
T ss_dssp HHTCCHHHHHHHHTCCHHHHHHHHHTSSCCCHHHHHHHHHHTCSC
T ss_pred HcCCCHHHHHHHHhhcHHHHHHHHHhccCCCHHHHHHHHHHHCcC
Confidence 333446677888888899999999999999999999999998643
No 4
>d1y9qa1 a.35.1.8 (A:4-82) Probable transcriptional regulator VC1968, N-terminal domain {Vibrio cholerae [TaxId: 666]}
Probab=36.23 E-value=12 Score=23.69 Aligned_cols=41 Identities=17% Similarity=0.140 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHhcC
Q 026489 139 AIKMLNSRIRVLHHYLVAMQKGEIPCENSLLRQVSSLLRRL 179 (238)
Q Consensus 139 al~~L~~rL~~i~~YL~~V~~G~~~~d~~IlR~l~~l~~~l 179 (238)
+.+.|-.++..=..|+.++.+|+..|+.+.+..|.+++.--
T Consensus 23 sq~~lA~~~gis~~~i~~~E~g~~~p~~~~l~~ia~~l~v~ 63 (79)
T d1y9qa1 23 SLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGLEAS 63 (79)
T ss_dssp CHHHHHHHHSSCHHHHHHHHTTCSCCCHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHCcchhHHHHHHcCCCCCCHHHHHHHHHHHCCC
Confidence 34556667777789999999999999999999999998643
No 5
>d2r1jl1 a.35.1.2 (L:3-68) P22 C2 repressor, DNA-binding domain {Salmonella bacteriophage P22 [TaxId: 10754]}
Probab=29.89 E-value=19 Score=21.81 Aligned_cols=38 Identities=16% Similarity=0.121 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHh
Q 026489 140 IKMLNSRIRVLHHYLVAMQKGEIPCENSLLRQVSSLLR 177 (238)
Q Consensus 140 l~~L~~rL~~i~~YL~~V~~G~~~~d~~IlR~l~~l~~ 177 (238)
...|-+++..=..++..+..|+..|+.+.+..|.++++
T Consensus 19 q~~lA~~~gvs~~~i~~~e~g~~~p~~~~l~~ia~~l~ 56 (66)
T d2r1jl1 19 QAALGKMVGVSNVAISQWERSETEPNGENLLALSKALQ 56 (66)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSSCCBHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCCCCHHHHHHHHHHhC
Confidence 44566666777789999999999999999999998864
No 6
>d1l9la_ a.64.1.1 (A:) Granulysin, NKG5 protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.72 E-value=59 Score=20.10 Aligned_cols=31 Identities=13% Similarity=0.064 Sum_probs=23.9
Q ss_pred HHHHHHHHHhhcCCCCCChHHHHHHHHHHhcCC
Q 026489 148 RVLHHYLVAMQKGEIPCENSLLRQVSSLLRRLP 180 (238)
Q Consensus 148 ~~i~~YL~~V~~G~~~~d~~IlR~l~~l~~~lP 180 (238)
+.+.++|++..+.+ -..+|...+..+|+.||
T Consensus 8 ~~vv~~ve~l~~n~--t~~~I~~~l~~~C~~lp 38 (74)
T d1l9la_ 8 LTIVQKLKKMVDKP--TQRSVSNAATRVCRTGR 38 (74)
T ss_dssp HHHHHHHHHHCSSC--CHHHHHHHHHHGGGSSC
T ss_pred HHHHHHHHHHhCCC--CHHHHHHHHHhHHHHCC
Confidence 35677788876543 34789999999999999
No 7
>d2b5aa1 a.35.1.3 (A:1-77) Regulatory protein C.BclI {Bacillus caldolyticus [TaxId: 1394]}
Probab=27.50 E-value=18 Score=22.68 Aligned_cols=40 Identities=10% Similarity=0.177 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHhc
Q 026489 139 AIKMLNSRIRVLHHYLVAMQKGEIPCENSLLRQVSSLLRR 178 (238)
Q Consensus 139 al~~L~~rL~~i~~YL~~V~~G~~~~d~~IlR~l~~l~~~ 178 (238)
+.+.|..++..=..|+..+..|+..|+.+.+..|+.++.-
T Consensus 25 tq~~lA~~~gis~~~i~~~e~g~~~p~~~~l~~ia~~l~v 64 (77)
T d2b5aa1 25 SQEELADLAGLHRTYISEVERGDRNISLINIHKICAALDI 64 (77)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTCSCCBHHHHHHHHHHTTC
T ss_pred CHHHHHHHHCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCC
Confidence 4556667777778999999999999999999888888754
No 8
>d1x57a1 a.35.1.12 (A:8-85) Endothelial differentiation-related factor 1, EDF1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.06 E-value=24 Score=22.41 Aligned_cols=39 Identities=15% Similarity=0.198 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHhc
Q 026489 140 IKMLNSRIRVLHHYLVAMQKGEIPCENSLLRQVSSLLRR 178 (238)
Q Consensus 140 l~~L~~rL~~i~~YL~~V~~G~~~~d~~IlR~l~~l~~~ 178 (238)
-+.|-.++..=..|+.++..|+..|+.+.+..|..++.-
T Consensus 22 q~~lA~~~gis~~~is~~E~G~~~p~~~~l~~la~~l~v 60 (78)
T d1x57a1 22 QKDLATKINEKPQVIADYESGRAIPNNQVLGKIERAIGL 60 (78)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTCSCCCHHHHHHHHHHHTB
T ss_pred hhHHHHcCCCCHHHHHHHHccCCCCCHHHHHHHHHHhCC
Confidence 345566667777899999999999999999999999864
No 9
>d1tqga_ a.24.10.3 (A:) Chemotaxis protein CheA P1 domain {Thermotoga maritima [TaxId: 2336]}
Probab=26.51 E-value=33 Score=22.61 Aligned_cols=37 Identities=16% Similarity=0.176 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHhc
Q 026489 142 MLNSRIRVLHHYLVAMQKGEIPCENSLLRQVSSLLRR 178 (238)
Q Consensus 142 ~L~~rL~~i~~YL~~V~~G~~~~d~~IlR~l~~l~~~ 178 (238)
.+......+-++++.+.+|+.+++.++...+...+..
T Consensus 59 ~i~~lah~lE~~l~~~~~~~~~~~~~~~~~l~~~~d~ 95 (105)
T d1tqga_ 59 SMAKLCHTLENILDKARNSEIKITSDLLDKIFAGVDM 95 (105)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 3445556778889999999999999888777666543
No 10
>d2ofya1 a.35.1.3 (A:3-84) Putative transcriptional regulator RHA1_ro04071 {Rhodococcus sp. RHA1 [TaxId: 101510]}
Probab=26.33 E-value=24 Score=22.86 Aligned_cols=39 Identities=13% Similarity=0.121 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCC-CCChHHHHHHHHHHh
Q 026489 139 AIKMLNSRIRVLHHYLVAMQKGEI-PCENSLLRQVSSLLR 177 (238)
Q Consensus 139 al~~L~~rL~~i~~YL~~V~~G~~-~~d~~IlR~l~~l~~ 177 (238)
++..|-+++..=..||.++..|+. .|+.+.+..|.+.+.
T Consensus 27 t~~eLA~~~Gvs~~~ls~iE~G~~~~ps~~tl~kia~~L~ 66 (82)
T d2ofya1 27 SMVTVAFDAGISVETLRKIETGRIATPAFFTIAAVARVLD 66 (82)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTCCSSCBHHHHHHHHHHTT
T ss_pred CHHHHHHHHcCCHHHHHHHHcCCcCCCCHHHHHHHHHHHC
Confidence 445688888889999999999985 689999998888765
No 11
>d1y7ya1 a.35.1.3 (A:5-73) Restriction-modification controller protein C.AhdI {Aeromonas hydrophila [TaxId: 644]}
Probab=25.94 E-value=20 Score=22.00 Aligned_cols=39 Identities=10% Similarity=0.121 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHh
Q 026489 139 AIKMLNSRIRVLHHYLVAMQKGEIPCENSLLRQVSSLLR 177 (238)
Q Consensus 139 al~~L~~rL~~i~~YL~~V~~G~~~~d~~IlR~l~~l~~ 177 (238)
+.+.|-.++..=..|+..+..|+..|+.+.+..|++.+.
T Consensus 24 tq~~lA~~~gis~~~i~~~E~g~~~p~~~~l~~ia~~l~ 62 (69)
T d1y7ya1 24 SQETLAFLSGLDRSYVGGVERGQRNVSLVNILKLATALD 62 (69)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTCSCCBHHHHHHHHHHTT
T ss_pred CHHHHHhHhCCCHHHHHHHHCCCCCCCHHHHHHHHHHhC
Confidence 344566666677789999999999999999999988875
No 12
>d1wr6a1 a.7.8.1 (A:211-300) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.05 E-value=47 Score=21.83 Aligned_cols=81 Identities=9% Similarity=0.204 Sum_probs=42.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCCChHHHHHHHHHHhcCCCCChHHHHHHHHHhh-chHHHHHHHHHHH
Q 026489 131 AHLTGIHSAIKMLNSRIRVLHHYLVAMQKGE-IPCENSLLRQVSSLLRRLPAIESEKFQDDFLMEY-NDTLLIAYLAMFT 208 (238)
Q Consensus 131 ~~l~~~~~al~~L~~rL~~i~~YL~~V~~G~-~~~d~~IlR~l~~l~~~lP~~~~~~f~~~~~~~~-~D~lmvsyLs~Lt 208 (238)
+.|+.+.+.++-|.++| +....|. .+.|.+++..|.+.|.+.- +.+.+...... +| ..|+.+.
T Consensus 6 s~le~v~~n~~lL~eML-------~~~~p~~~~~~~~eli~eL~~~C~~~q----p~i~~li~~~~~de----e~l~elL 70 (90)
T d1wr6a1 6 HTLEEVNNNVRLLSEML-------LHYSQEDSSDGDRELMKELFDQCENKR----RTLFKLASETEDND----NSLGDIL 70 (90)
T ss_dssp CCHHHHHHHHHHHHHHT-------TTCCTTTSCHHHHHHHHHHHHHHHHHH----HHHHHHHHTCCTTC----SSHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-------HhcCCCCCccchhHHHHHHHHHHHHHH----HHHHHHHhhcCCCH----HHHHHHH
Confidence 34445555555554444 4555444 4556788888888877652 34444443322 33 2334444
Q ss_pred HHHHHHHHHHHHHhhhhh
Q 026489 209 NCASTMNELVDKFNTAYD 226 (238)
Q Consensus 209 k~~~al~el~~Kl~~~~~ 226 (238)
+.--.|+.+..|+..+-.
T Consensus 71 ~~ND~L~~vl~~y~~~~~ 88 (90)
T d1wr6a1 71 QASDNLSRVINSYKTIIE 88 (90)
T ss_dssp HHHHHHHHHHTHHHHTTT
T ss_pred HHhHHHHHHHHHHHHHHC
Confidence 555555566666554433
Done!