Query 026491
Match_columns 238
No_of_seqs 125 out of 1263
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 08:42:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026491.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026491hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1303 Amino acid transporter 100.0 2.3E-43 5.1E-48 319.2 17.2 224 11-238 30-258 (437)
2 PTZ00206 amino acid transporte 100.0 2.2E-35 4.9E-40 271.7 19.7 217 18-238 59-286 (467)
3 KOG1304 Amino acid transporter 100.0 5.6E-33 1.2E-37 249.1 16.3 211 18-238 46-271 (449)
4 PF01490 Aa_trans: Transmembra 100.0 1.3E-34 2.8E-39 261.5 -0.5 218 17-238 1-222 (409)
5 PLN03074 auxin influx permease 100.0 1.5E-31 3.3E-36 246.1 18.9 207 18-238 45-263 (473)
6 KOG4303 Vesicular inhibitory a 100.0 3.8E-31 8.2E-36 227.3 4.1 212 13-238 111-332 (524)
7 KOG1305 Amino acid transporter 99.9 4.3E-26 9.4E-31 205.7 9.2 217 15-238 2-224 (411)
8 COG0814 SdaC Amino acid permea 99.9 2.5E-24 5.3E-29 195.6 19.8 219 14-238 4-223 (415)
9 PRK10483 tryptophan permease; 99.7 1.4E-15 3.1E-20 137.4 20.4 214 14-236 6-220 (414)
10 PRK09664 tryptophan permease T 99.7 2.1E-15 4.5E-20 136.3 20.0 209 16-236 6-221 (415)
11 PF03222 Trp_Tyr_perm: Tryptop 99.7 8.1E-15 1.8E-19 132.6 20.3 210 17-236 1-212 (394)
12 PRK15132 tyrosine transporter 99.7 1.7E-14 3.7E-19 130.5 20.4 207 18-236 2-209 (403)
13 TIGR00837 araaP aromatic amino 99.6 2.9E-14 6.3E-19 128.3 17.1 204 25-237 3-207 (381)
14 PRK13629 threonine/serine tran 99.5 1.6E-12 3.5E-17 118.0 20.4 208 25-236 25-237 (443)
15 TIGR00814 stp serine transport 99.4 1.5E-10 3.3E-15 104.8 20.8 200 25-231 9-209 (397)
16 PRK10655 potE putrescine trans 98.8 1.6E-06 3.4E-11 79.5 22.1 212 15-238 4-219 (438)
17 TIGR01773 GABAperm gamma-amino 98.7 1.6E-06 3.4E-11 79.9 19.0 213 14-238 9-231 (452)
18 PRK10435 cadB lysine/cadaverin 98.7 3.1E-06 6.8E-11 77.6 20.8 210 14-237 2-216 (435)
19 TIGR00905 2A0302 transporter, 98.7 6.2E-06 1.3E-10 76.5 22.1 213 16-236 6-227 (473)
20 PRK10644 arginine:agmatin anti 98.6 1E-05 2.2E-10 74.4 21.5 213 14-238 5-221 (445)
21 PRK10238 aromatic amino acid t 98.6 4.9E-06 1.1E-10 76.9 19.4 211 14-238 9-230 (456)
22 PRK11049 D-alanine/D-serine/gl 98.6 6.2E-06 1.3E-10 76.4 19.3 213 15-238 18-241 (469)
23 TIGR00912 2A0309 spore germina 98.6 4.9E-06 1.1E-10 74.3 17.4 146 18-174 2-147 (359)
24 TIGR00909 2A0306 amino acid tr 98.6 8.6E-06 1.9E-10 74.3 18.7 213 16-237 2-224 (429)
25 PRK10580 proY putative proline 98.6 1.9E-05 4.1E-10 72.9 21.0 215 13-238 5-229 (457)
26 PRK11387 S-methylmethionine tr 98.5 1.7E-05 3.7E-10 73.5 20.0 103 15-121 12-117 (471)
27 PRK11021 putative transporter; 98.5 1.8E-05 3.9E-10 72.0 19.2 202 20-238 2-207 (410)
28 PRK10746 putative transport pr 98.5 3E-05 6.5E-10 71.8 20.8 214 12-237 5-229 (461)
29 TIGR03810 arg_ornith_anti argi 98.5 3.2E-05 7E-10 71.6 21.1 112 17-129 1-113 (468)
30 PRK10249 phenylalanine transpo 98.5 2E-05 4.4E-10 72.8 19.1 210 16-237 20-238 (458)
31 TIGR00908 2A0305 ethanolamine 98.4 4.9E-05 1.1E-09 69.8 19.7 211 13-238 3-221 (442)
32 KOG3832 Predicted amino acid t 98.4 6E-06 1.3E-10 67.6 11.4 203 26-236 19-301 (319)
33 TIGR00906 2A0303 cationic amin 98.4 7.6E-05 1.6E-09 70.8 20.5 218 15-238 26-261 (557)
34 TIGR00913 2A0310 amino acid pe 98.4 6E-05 1.3E-09 69.9 19.2 214 16-238 1-227 (478)
35 TIGR00911 2A0308 L-type amino 98.3 7E-05 1.5E-09 70.0 19.4 218 8-237 33-264 (501)
36 PRK15049 L-asparagine permease 98.3 0.00012 2.6E-09 68.5 20.6 92 16-110 27-119 (499)
37 PRK11357 frlA putative fructos 98.3 8.7E-05 1.9E-09 68.2 18.9 214 13-238 4-225 (445)
38 PRK10836 lysine transporter; P 98.3 7.3E-05 1.6E-09 69.7 18.4 95 10-108 8-105 (489)
39 COG1113 AnsP Gamma-aminobutyra 98.3 0.00018 4E-09 65.5 19.4 212 12-237 8-232 (462)
40 PF13520 AA_permease_2: Amino 98.2 5.1E-05 1.1E-09 69.0 15.7 207 20-237 2-217 (426)
41 PF03845 Spore_permease: Spore 98.2 0.00039 8.4E-09 61.2 19.6 141 18-173 1-144 (320)
42 TIGR00800 ncs1 NCS1 nucleoside 98.2 0.00096 2.1E-08 61.5 22.9 206 21-237 23-237 (442)
43 TIGR00930 2a30 K-Cl cotranspor 98.1 0.00014 3.1E-09 72.8 17.6 113 17-130 76-190 (953)
44 COG0531 PotE Amino acid transp 98.1 0.00052 1.1E-08 62.9 20.0 219 11-237 6-230 (466)
45 TIGR03428 ureacarb_perm permea 98.1 0.0023 4.9E-08 59.5 23.4 222 12-238 8-243 (475)
46 PRK10197 gamma-aminobutyrate t 98.0 0.00052 1.1E-08 63.3 18.2 199 29-238 4-211 (446)
47 KOG1287 Amino acid transporter 97.7 0.001 2.2E-08 61.3 13.6 216 10-237 5-233 (479)
48 TIGR00907 2A0304 amino acid pe 97.4 0.032 6.9E-07 51.8 20.1 114 10-129 5-128 (482)
49 PRK11017 codB cytosine permeas 97.2 0.098 2.1E-06 47.7 20.1 112 48-172 39-150 (404)
50 TIGR02358 thia_cytX probable h 97.2 0.11 2.4E-06 47.1 20.4 138 21-174 7-144 (386)
51 PF02554 CstA: Carbon starvati 97.1 0.025 5.3E-07 50.6 15.0 109 12-126 45-157 (376)
52 COG0833 LysP Amino acid transp 97.1 0.029 6.4E-07 52.4 15.6 203 15-227 42-253 (541)
53 PRK15238 inner membrane transp 97.1 0.23 5E-06 46.4 21.7 81 16-104 6-91 (496)
54 PRK11375 allantoin permease; P 97.0 0.28 6.1E-06 45.9 23.4 144 21-175 36-191 (484)
55 COG3949 Uncharacterized membra 97.0 0.013 2.8E-07 51.6 11.9 102 23-128 7-111 (349)
56 PF02133 Transp_cyt_pur: Perme 97.0 0.016 3.4E-07 53.3 13.2 81 48-131 39-119 (440)
57 COG1457 CodB Purine-cytosine p 97.0 0.098 2.1E-06 48.2 17.5 77 86-172 84-160 (442)
58 TIGR00835 agcS amino acid carr 96.7 0.2 4.4E-06 46.0 17.4 83 17-104 45-138 (425)
59 PF00324 AA_permease: Amino ac 96.6 0.016 3.6E-07 53.7 10.3 97 30-127 8-104 (478)
60 TIGR02119 panF sodium/pantothe 96.3 0.73 1.6E-05 42.8 18.8 149 16-177 39-193 (471)
61 TIGR00910 2A0307_GadC glutamat 96.3 0.59 1.3E-05 43.9 18.3 82 16-107 3-90 (507)
62 PF00474 SSF: Sodium:solute sy 96.0 0.38 8.3E-06 43.6 15.4 149 16-177 5-156 (406)
63 KOG1286 Amino acid transporter 96.0 0.033 7.2E-07 52.8 8.3 222 15-237 28-261 (554)
64 TIGR00813 sss transporter, SSS 95.9 1 2.3E-05 40.8 17.6 148 16-176 2-151 (407)
65 PRK15015 carbon starvation pro 95.9 0.24 5.1E-06 47.6 13.3 108 12-125 76-187 (701)
66 COG1966 CstA Carbon starvation 95.3 0.31 6.6E-06 45.8 11.6 107 12-124 45-155 (575)
67 TIGR00796 livcs branched-chain 95.3 0.82 1.8E-05 41.5 14.3 79 83-170 255-333 (378)
68 PRK09395 actP acetate permease 95.0 3.4 7.4E-05 39.3 19.3 147 16-175 68-216 (551)
69 PRK12488 acetate permease; Pro 94.5 4.4 9.6E-05 38.5 19.6 148 16-177 66-216 (549)
70 PRK09442 panF sodium/panthothe 94.2 4.9 0.00011 37.5 18.8 151 16-178 40-195 (483)
71 COG0591 PutP Na+/proline sympo 92.1 11 0.00023 35.5 18.0 148 17-176 38-190 (493)
72 TIGR02711 symport_actP cation/ 91.2 14 0.00031 35.1 19.0 146 16-175 66-214 (549)
73 TIGR03813 put_Glu_GABA_T putat 90.9 13 0.00029 34.3 18.2 81 19-108 3-87 (474)
74 TIGR02121 Na_Pro_sym sodium/pr 90.5 15 0.00033 34.3 18.4 150 16-176 35-191 (487)
75 TIGR03648 Na_symport_lg probab 89.4 20 0.00043 34.1 18.7 146 16-174 31-178 (552)
76 PF05525 Branch_AA_trans: Bran 88.9 3.6 7.9E-05 37.9 9.5 64 84-155 262-325 (427)
77 PRK15419 proline:sodium sympor 83.9 38 0.00082 31.8 18.1 150 16-177 39-196 (502)
78 PF01566 Nramp: Natural resist 78.7 48 0.001 29.5 14.4 110 47-170 10-122 (358)
79 KOG1289 Amino acid transporter 78.4 63 0.0014 30.8 13.8 88 93-182 128-217 (550)
80 PRK15433 branched-chain amino 77.7 21 0.00046 33.0 9.5 65 85-158 267-331 (439)
81 COG1114 BrnQ Branched-chain am 77.3 60 0.0013 29.9 13.3 78 84-170 264-341 (431)
82 TIGR00909 2A0306 amino acid tr 76.4 59 0.0013 29.4 16.0 47 83-129 264-310 (429)
83 PRK00701 manganese transport p 73.6 77 0.0017 29.4 16.7 45 83-127 94-138 (439)
84 PHA02764 hypothetical protein; 72.6 19 0.0004 32.2 7.3 79 17-105 12-99 (399)
85 PF13520 AA_permease_2: Amino 54.3 1.6E+02 0.0035 26.4 13.3 47 84-130 259-305 (426)
86 TIGR01197 nramp NRAMP (natural 52.5 1.8E+02 0.004 26.4 17.5 99 23-128 8-109 (390)
87 PRK10484 putative transporter; 50.9 2.2E+02 0.0048 26.8 18.1 156 16-178 37-198 (523)
88 TIGR03810 arg_ornith_anti argi 47.9 2.3E+02 0.0049 26.1 14.0 45 85-129 266-310 (468)
89 KOG2083 Na+/K+ symporter [Inor 40.6 47 0.001 32.0 4.6 108 20-132 31-144 (643)
90 PF02028 BCCT: BCCT family tra 40.0 3.3E+02 0.0071 25.7 18.2 92 85-179 164-257 (485)
91 PF01235 Na_Ala_symp: Sodium:a 39.1 1.9E+02 0.0041 26.7 8.2 86 90-183 300-385 (416)
92 KOG2082 K+/Cl- cotransporter K 38.7 2.7E+02 0.0058 28.1 9.3 138 39-179 136-287 (1075)
93 PRK11357 frlA putative fructos 38.5 3.1E+02 0.0067 25.0 17.6 46 84-129 265-312 (445)
94 PRK10644 arginine:agmatin anti 38.1 3.1E+02 0.0068 24.9 14.6 46 83-128 260-305 (445)
95 COG1914 MntH Mn2+ and Fe2+ tra 37.1 3.4E+02 0.0074 25.1 15.7 104 20-128 18-122 (416)
96 COG1115 AlsT Na+/alanine sympo 37.0 3.5E+02 0.0077 25.2 16.1 162 14-189 58-231 (452)
97 PF01235 Na_Ala_symp: Sodium:a 36.8 3.4E+02 0.0075 25.0 18.0 37 12-49 12-49 (416)
98 PRK11387 S-methylmethionine tr 36.5 3.4E+02 0.0074 24.9 15.2 48 82-129 274-321 (471)
99 TIGR00796 livcs branched-chain 35.0 3.5E+02 0.0076 24.6 19.1 73 27-106 3-77 (378)
100 COG1292 BetT Choline-glycine b 31.5 4.7E+02 0.01 25.0 11.0 32 84-115 176-207 (537)
101 PRK11462 putative transporter; 31.5 4.1E+02 0.0089 24.3 9.6 14 84-97 216-229 (460)
102 cd02431 Ferritin_CCC1_C CCC1-r 31.2 1.1E+02 0.0023 24.0 4.6 43 5-48 51-93 (149)
103 COG1953 FUI1 Cytosine/uracil/t 25.0 6E+02 0.013 24.1 19.5 90 82-177 102-206 (497)
104 PRK15238 inner membrane transp 25.0 5.6E+02 0.012 23.8 14.2 29 93-121 312-340 (496)
105 KOG1287 Amino acid transporter 22.5 6.6E+02 0.014 23.7 11.6 85 85-171 275-367 (479)
106 PRK10249 phenylalanine transpo 20.9 6.5E+02 0.014 23.0 18.1 46 83-128 278-323 (458)
107 TIGR00837 araaP aromatic amino 20.1 6.1E+02 0.013 22.4 14.2 44 87-130 257-301 (381)
No 1
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=2.3e-43 Score=319.22 Aligned_cols=224 Identities=33% Similarity=0.487 Sum_probs=194.4
Q ss_pred CCccccccchhHHHHHHHHhhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccc----cCCcccCcHH
Q 026491 11 YFFHLEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHE----FGGKRHIRYR 86 (238)
Q Consensus 11 ~~~~~~~~~s~~~a~~~l~~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~~~----~~~~~~~sY~ 86 (238)
++.+++|++||++|++|.++..+|.|+|+||+| ++++||++|+++++..+++++||..+|.+|++ ..+||+++|+
T Consensus 30 ~~~~~~~~~s~~~a~~~~i~~~~G~gvLsLP~A-~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~r~~~Y~ 108 (437)
T KOG1303|consen 30 DPITPSRGGSWWQAAFHIINALIGAGVLSLPYA-LAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGKRRYRYP 108 (437)
T ss_pred CccccCCCCcceehhhheehhhhhhhhhhhHHH-HHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCChH
Confidence 344458889999999999999999999999999 99999999999999999999999999999954 4567889999
Q ss_pred HHHHHHcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhcCCChhhHHH
Q 026491 87 DLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGV 166 (238)
Q Consensus 87 ~l~~~~~G~~~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~~lpl~~l~~l~~l~~ 166 (238)
|+++++||+++++++...|.++++|+|++|+++.||+++.+++.+..++...+.+.|++++++++ +|++++||++.+++
T Consensus 109 dl~~~afG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~~l~~~~f~iif~~i~-~~~s~lp~~~~l~~ 187 (437)
T KOG1303|consen 109 DLGQAAFGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDNSLDKQYFIIIFGLIV-LPLSQLPNFHSLSY 187 (437)
T ss_pred HHHHHHhCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccceehhhhHHHHH-HHHHHCCCcchhHH
Confidence 99999999999999999999999999999999999999999998764432556789999999998 89999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcCCCCCCcchhhhhhHhHHHHHHHHhc-cCchhhhhhcccCCC
Q 026491 167 WLGVSTVLSTIYIVIAIWLSVRDGLKNPARDYSIPGTTATKIFESIGACANLVFAFN-TGMLPEIQVREEFRS 238 (238)
Q Consensus 167 ~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~gi~~Fafg-~~v~p~I~~~M~~~~ 238 (238)
+|..+++.++.|..+.++.++.++.+...++.+......... .|+++|+++|||+ |+++||||++||+|+
T Consensus 188 ~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~~~~~~~--~f~a~g~iaFaf~gH~v~peIq~tMk~p~ 258 (437)
T KOG1303|consen 188 LSLVGAVMSTLYAVILIVLGIADGVGFCAPSGGYLDLGTIPT--VFTALGIIAFAYGGHAVLPEIQHTMKSPP 258 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccCCcccCcccCCCCcc--hhhhhhheeeeecCCeeeeehHhhcCCch
Confidence 999999999999999999999888654222222211111111 1899999999997 999999999999985
No 2
>PTZ00206 amino acid transporter; Provisional
Probab=100.00 E-value=2.2e-35 Score=271.74 Aligned_cols=217 Identities=14% Similarity=0.099 Sum_probs=166.8
Q ss_pred cchhHHHHHHHHhhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCCcccCcHHHHHHHHcCccc
Q 026491 18 LDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYGRRA 97 (238)
Q Consensus 18 ~~s~~~a~~~l~~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~~~~~~~~~~sY~~l~~~~~G~~~ 97 (238)
+++..+++||++|+++|+|+|++|+| ++++||+.|++++++++.++.||+++|.++.++.+ .++|+|+++++|||++
T Consensus 59 ~gg~~~s~fnL~~~~iGaGILsLP~A-f~~~G~v~giillil~a~ls~ys~~lL~~~~~~~~--~~sY~~la~~~~G~~g 135 (467)
T PTZ00206 59 PGGIAASAFNIASSTVGAGIVGLPSA-ANSSGLVMAMIYLIIITAMTIFSIYALGVAADKTN--IRTYEGVARVLLGPWG 135 (467)
T ss_pred CCcHHHHHHHHHHHHHhHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--CCCHHHHHHHHhCHHH
Confidence 45678999999999999999999999 99999999999999999999999999999976543 4599999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---C-CCCchhhHHHHHHHHHHHHhcCCChhhHHHHHHHHHH
Q 026491 98 YALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDD---H-TMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTV 173 (238)
Q Consensus 98 ~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~---~-~~~~~~~iii~~~~~~lpl~~l~~l~~l~~~S~~~~~ 173 (238)
++++++.+.+.++|+|++|+++.||+++++++....++ . ..++..+.+++.+++ +|++++|++++|+|+|.++++
T Consensus 136 ~~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~~~~~~~r~~~~~i~~~i~-lPLs~~r~i~~L~~~S~i~~~ 214 (467)
T PTZ00206 136 SYYVAATRAFHGFSACVAYVISVGDILSATLKGTNAPDFLKQKSGNRLLTSLMWLCFM-LPLVIPRHIDSLRYVSTIAVS 214 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhccCcEEeeeehhhhHh-hhcccccchHHHHHHHHHHHH
Confidence 99999999999999999999999999999886432111 0 112233444555555 899999999999999999986
Q ss_pred HHHHHHHHHHHHHhhcCCCC--CCCcCCCCCCc---chh-hhhhHhHHHHHHHHhc-cCchhhhhhcccCCC
Q 026491 174 LSTIYIVIAIWLSVRDGLKN--PARDYSIPGTT---ATK-IFESIGACANLVFAFN-TGMLPEIQVREEFRS 238 (238)
Q Consensus 174 ~~~~~~~i~~~~~i~~~~~~--~~~~~~~~~~~---~~~-~~~~~~a~gi~~Fafg-~~v~p~I~~~M~~~~ 238 (238)
+.+...+.+++.++.++.+. ++.+....+.+ ..+ ..+++.++|+++|||. |.++||+++|||||+
T Consensus 215 ~i~~~vi~ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~~M~~~t 286 (467)
T PTZ00206 215 FMVYLVIVIVVHSCMNGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMDMTNRS 286 (467)
T ss_pred HHHHHHhhhhhhhhcccCcccccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHHhhcccc
Confidence 54433333333444444321 11111111111 111 1357889999999996 999999999999975
No 3
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=5.6e-33 Score=249.07 Aligned_cols=211 Identities=17% Similarity=0.129 Sum_probs=174.6
Q ss_pred cchhHHHHHHHHhhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccc----cCCcccCcHHHHHHHH-
Q 026491 18 LDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHE----FGGKRHIRYRDLAGHI- 92 (238)
Q Consensus 18 ~~s~~~a~~~l~~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~~~----~~~~~~~sY~~l~~~~- 92 (238)
..|..++..|+.|+++|+|+|++|+| |+++||+.|.+..++.+.+++||+++|++|.. +.++...+|+|.++.+
T Consensus 46 ~~s~~~tl~hl~k~~iGtG~l~lP~A-Fk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~~a~ 124 (449)
T KOG1304|consen 46 PTSATQTLIHLLKGSIGTGILSLPLA-FKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETAESAM 124 (449)
T ss_pred CCchHHHHHHHHHhhhccccccChHH-HHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHHHHHH
Confidence 35899999999999999999999999 99999999999999999999999999999933 2223346788887665
Q ss_pred ---------cCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhcCCChhh
Q 026491 93 ---------YGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSA 163 (238)
Q Consensus 93 ---------~G~~~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~~lpl~~l~~l~~ 163 (238)
+||++|.+++.+++++|+|.|++|+++.++|++++.+... ...++.+.|+++...++ +|++++||+|.
T Consensus 125 ~~~~~~~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~~--~~~~s~~~~i~~~~~~~-lll~~Ir~Lk~ 201 (449)
T KOG1304|consen 125 EGGPGWLRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEHS--PGVLSVRLYILIQLPPL-LLLNLIRNLKI 201 (449)
T ss_pred cCCcHHHHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhccC--CCCccHHHHHHHHHHHH-HHHHHHHhhHH
Confidence 5677899999999999999999999999999999998332 24678899999998888 79999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcCCCCCCcchhhhhhHhHHHHHHHHh-ccCchhhhhhcccCCC
Q 026491 164 LGVWLGVSTVLSTIYIVIAIWLSVRDGLKNPARDYSIPGTTATKIFESIGACANLVFAF-NTGMLPEIQVREEFRS 238 (238)
Q Consensus 164 l~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~gi~~Faf-g~~v~p~I~~~M~~~~ 238 (238)
|+++|++|++..+....++..+.+.+..+ . .+.+ ...++.+.+.++|+.+||| |.+++.|+|++||+|.
T Consensus 202 Lsp~Sl~Anv~~~~g~~ii~~y~~~~~~~---~-~~~~--~~~~~~~~~lf~GtaifafEGig~VLPlEn~Mk~P~ 271 (449)
T KOG1304|consen 202 LSPFSLFANVFILVGLAIIMYYLVQDLPP---T-SDLP--AVTGWSGLPLFFGTAIFAFEGIGMVLPLENSMKKPQ 271 (449)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhccCC---c-cccc--cccchhhhHHHHHHHHHHhccceEEEehhhcccChh
Confidence 99999999988777666655444443221 1 1111 1223456788999999999 7999999999999983
No 4
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=99.98 E-value=1.3e-34 Score=261.49 Aligned_cols=218 Identities=22% Similarity=0.294 Sum_probs=177.0
Q ss_pred ccchhHHHHHHHHhhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccC--CcccCcHHHHHHHHcC
Q 026491 17 MLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFG--GKRHIRYRDLAGHIYG 94 (238)
Q Consensus 17 ~~~s~~~a~~~l~~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~~~~~--~~~~~sY~~l~~~~~G 94 (238)
+|+|++++.+|++|+++|+|+|++|++ ++++||+.|++++++++.++.||.++|.++++.. +++..+|+|++++.+|
T Consensus 1 ~~~s~~~~~~~l~~~~iG~G~L~lP~a-f~~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~~~~~~~~y~~l~~~~~G 79 (409)
T PF01490_consen 1 HKGSWFSAFFNLINSIIGAGILSLPYA-FAQSGWVLGIILLVLVALLSYYTMYLLVRAANAMPNGTGRRSYGDLARRAFG 79 (409)
T ss_pred CCccHHHHHHHHHHHHHhHHHHHHHHH-HHHhhhhhhhHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccc
Confidence 689999999999999999999999999 9999999999999999999999999999997642 3456799999999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhcCCChhhHHHHHHHHHHH
Q 026491 95 RRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVL 174 (238)
Q Consensus 95 ~~~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~~lpl~~l~~l~~l~~~S~~~~~~ 174 (238)
|++++++++++.+.++|.|++|+++.+|+++++.+.... +...++..|+++..+++ +|++++|++++++++|.++.++
T Consensus 80 ~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~-~~~~~~~~~~~i~~~i~-~pls~~~~l~~l~~~s~~~~~~ 157 (409)
T PF01490_consen 80 PKGKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFFG-DLFISRYVWIIIFALIV-LPLSFLKNLKSLRYLSILGLFS 157 (409)
T ss_pred ccccccccchheeccccccceeEEEeeeeeecccccccc-ccccccccccccccccc-ccccccchhhHHHHHhhhhhhc
Confidence 999999999999999999999999999999999876542 13456777888877777 8999999999999999999876
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCcCCCC-CCcchhhhhhHhHHHHHHHHhc-cCchhhhhhcccCCC
Q 026491 175 STIYIVIAIWLSVRDGLKNPARDYSIP-GTTATKIFESIGACANLVFAFN-TGMLPEIQVREEFRS 238 (238)
Q Consensus 175 ~~~~~~i~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~a~gi~~Fafg-~~v~p~I~~~M~~~~ 238 (238)
.+.++++.+......... ++.+...+ .++..+.++.+.++|+++|||+ |..+||+++|||+|+
T Consensus 158 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~~ 222 (409)
T PF01490_consen 158 IFYFIVIVVIYIISYGPG-EPSGVPSPPVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDPS 222 (409)
T ss_pred cceeeeeecceeeeeecc-cccccccccccccchhhHHHHhhhhhhhhhhcccccceeeeeccCCc
Confidence 543322222222222211 11111111 1223446789999999999996 999999999999985
No 5
>PLN03074 auxin influx permease; Provisional
Probab=99.98 E-value=1.5e-31 Score=246.12 Aligned_cols=207 Identities=14% Similarity=0.164 Sum_probs=167.1
Q ss_pred cchhHHHHHHHHhhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcccc----CCc-----cc--CcHH
Q 026491 18 LDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEF----GGK-----RH--IRYR 86 (238)
Q Consensus 18 ~~s~~~a~~~l~~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~~~~----~~~-----~~--~sY~ 86 (238)
++++.++.+|++|..+|+|+|+||+| ++++||++|++.+++.++++.||+++|.+++.+ .++ ++ .+|.
T Consensus 45 ~~s~~~~~~~l~~~~vG~GILaLP~A-f~~~G~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~~~~ 123 (473)
T PLN03074 45 GGSVYDAWFSCASNQVAQVLLTLPYS-FSQLGMLSGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVIQWF 123 (473)
T ss_pred CchHHHHHHHHHHHHHhHHHHhHHHH-HHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHHHHH
Confidence 45889999999999999999999999 999999999999999999999999999987321 111 11 3689
Q ss_pred HHHHHHcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhcCCChhhHHH
Q 026491 87 DLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGV 166 (238)
Q Consensus 87 ~l~~~~~G~~~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~~lpl~~l~~l~~l~~ 166 (238)
|+++..+||+++.+...+.++.+++.|+.|++..++++..+. ..++.+.|++++++++ +|++++|++|++++
T Consensus 124 e~~~~~~G~~~~~~~~~~~~v~l~~~~v~~li~~~~~~~~l~-------~~~~~~~~~~i~~~v~-~~~~~i~sl~~l~~ 195 (473)
T PLN03074 124 EVLDGLLGPYWKNVGLAFNCTFLLFGSVIQLIACASNIYYIN-------DNLDKRTWTYIFGACC-ATTVFIPSFHNYRI 195 (473)
T ss_pred HHHHHhcChhHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhC-------CCcCCCeEEeehHHHH-HHHHHccCHHHHHH
Confidence 999999999999999999999999999999999998887651 2456688898988888 79999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcCCCCCCcchhhhhhHhHHHHHHHHhc-cCchhhhhhcccCCC
Q 026491 167 WLGVSTVLSTIYIVIAIWLSVRDGLKNPARDYSIPGTTATKIFESIGACANLVFAFN-TGMLPEIQVREEFRS 238 (238)
Q Consensus 167 ~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~gi~~Fafg-~~v~p~I~~~M~~~~ 238 (238)
+|.+++.+++.+.+.++..++.++.. |+.+++ ...++..+++++++++|||+ |+++||||++||||+
T Consensus 196 ~S~ig~~~tl~~av~i~i~~i~~~~~-~~~~~~----~~~~~~~~f~~~~~i~faf~g~~v~~~I~~~M~~P~ 263 (473)
T PLN03074 196 WSFLGLLMTTYTAWYMTIAALSHGQV-EGVKHS----GPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQ 263 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCC-CCCCCC----CchhHHHHHHHHHHHHHHhcccccHHHHHHhccChh
Confidence 99999876655443333334444322 222211 12245567888999999995 999999999999995
No 6
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=99.96 E-value=3.8e-31 Score=227.27 Aligned_cols=212 Identities=16% Similarity=0.170 Sum_probs=181.2
Q ss_pred ccccccchhHHHHHHHHhhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCC---c---ccCcHH
Q 026491 13 FHLEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGG---K---RHIRYR 86 (238)
Q Consensus 13 ~~~~~~~s~~~a~~~l~~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~~~~~~---~---~~~sY~ 86 (238)
|+.+.|-+.|||++|++|++.|.-+++||+| ..+.|| +++..++..|.+++||+++|++|.-+++ + .+++|.
T Consensus 111 Ge~~~kI~a~qAaWNVTNAIQGMFivgLP~A-vlhGGy-w~i~amvg~A~vCcyTGk~Li~CLYE~~~dGevVrvRdsYv 188 (524)
T KOG4303|consen 111 GEASEKISALQAAWNVTNAIQGMFIVGLPIA-VLHGGY-WSIGAMVGVAYVCCYTGKLLIECLYENGEDGEVVRVRDSYV 188 (524)
T ss_pred CCCCCccHHHHHhhhhhhhhheeeEecccee-eeEcch-hHHHHHHhhhhhhhccchhhhhhhccCCCCCcEEEeehhHH
Confidence 4556677999999999999999999999999 999999 7999999999999999999999943222 1 247999
Q ss_pred HHHHHHcCccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhcCCChhhHH
Q 026491 87 DLAGHIYGRRA-YALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALG 165 (238)
Q Consensus 87 ~l~~~~~G~~~-~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~~lpl~~l~~l~~l~ 165 (238)
++++.+++|.. ...+.+.|+++++.+|+.|++..||.++.-|+ +...+.+.|+++..+.+ +|+++++++|-.+
T Consensus 189 aIA~~C~~P~lGgr~V~~AQliELlmTCIlYvVv~gdLl~~~fP-----~~svd~~sWm~i~~a~L-Lpc~FLk~Lk~VS 262 (524)
T KOG4303|consen 189 AIADFCYKPGLGGRWVLAAQLIELLMTCILYVVVAGDLLQSCFP-----GLSVDKASWMMITSASL-LPCSFLKDLKIVS 262 (524)
T ss_pred HHHHHhcCCCcchheeeHHHHHHHHHHHHhhhheechhhhccCC-----CCCccccchhhhhhHHH-hhhHHHHHHHHHH
Confidence 99999999974 47789999999999999999999999987763 45677889999999998 8999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCC--CCCcCCCCCCcchhhhhhHhHHHHHHHHhc-cCchhhhhhcccCCC
Q 026491 166 VWLGVSTVLSTIYIVIAIWLSVRDGLKN--PARDYSIPGTTATKIFESIGACANLVFAFN-TGMLPEIQVREEFRS 238 (238)
Q Consensus 166 ~~S~~~~~~~~~~~~i~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~a~gi~~Fafg-~~v~p~I~~~M~~~~ 238 (238)
.+|+++.++.++...+++.+++....++ .+++.++ +..+++..+|+++|+|+ |..+|++|.+|++||
T Consensus 263 ~lSf~ct~sH~viN~i~v~YCLs~~~dW~wskv~Fsi------di~~fPisvG~iVFsYTSqIFLP~LEGNM~~ps 332 (524)
T KOG4303|consen 263 RLSFFCTISHLVINLIMVLYCLSFVSDWSWSKVTFSI------DINTFPISVGMIVFSYTSQIFLPNLEGNMKNPS 332 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccceeEEEEE------EcccCceEEEEEEEeeeceeeccccccccCChh
Confidence 9999999999999888888887665432 1222221 23456788999999997 999999999999997
No 7
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=99.93 E-value=4.3e-26 Score=205.69 Aligned_cols=217 Identities=18% Similarity=0.209 Sum_probs=164.6
Q ss_pred ccccchhHHHHHHHHhhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCCcccCcHHHHHHHHcC
Q 026491 15 LEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYG 94 (238)
Q Consensus 15 ~~~~~s~~~a~~~l~~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~~~~~~~~~~sY~~l~~~~~G 94 (238)
.+++.|.+.+++|+.|+++|+|+|++|+| |++.|.+.|+++++.+|.++.++.+++.++.++.++| +|+++++.++|
T Consensus 2 ~~~~~s~~~~v~nl~~ti~GaGIl~~P~a-fk~~Giv~gi~li~~~a~~s~~sl~~l~~~a~~~~~~--ty~~l~~~~~g 78 (411)
T KOG1305|consen 2 MSGKTSFRSAVFNLVNTIMGAGILAMPYA-FKTAGLLLGILLIVLSAFLSLLSLYLLSKCAKKSGER--TYSSLGDLIFG 78 (411)
T ss_pred CCCccchhhhHHHHHhhhhccHHHHhHHH-HHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCCC--CHHHHHHHHcC
Confidence 45677999999999999999999999999 9999999999999999999999999999997766655 99999999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----CCCchh-hHHHHHHHHHHHHhcCCChhhHHHHHH
Q 026491 95 RRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDH----TMKLPY-FIAIAGFVCALFAIGIPNLSALGVWLG 169 (238)
Q Consensus 95 ~~~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~~----~~~~~~-~iii~~~~~~lpl~~l~~l~~l~~~S~ 169 (238)
+.++....+......+| |++|+++.||.++.+......++. ..+++. |++....++ +||+..|++.++++.|.
T Consensus 79 ~~g~~~~~v~~~~~~~g-~i~yliiigd~~p~~~~~~~~~~~~~~~~~~~~~~ill~~~~~i-~pLsl~k~l~~Lk~tS~ 156 (411)
T KOG1305|consen 79 KLGKVDAAVAVKCFGVG-MVSYLIIIGDLLPGFIRSLFLDEEGGSHYLDRNFLILLVLLFII-LPLSLLKNLDSLKYTSA 156 (411)
T ss_pred CCceeeehhhHHhhhcc-ceEEEEEEccccchhhhhcccccccccccccceeEeehHHHHHH-HHHHHHHhhhhHHHHHH
Confidence 99966555555555556 699999999999977665332211 123333 466665555 89999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCcCCCCCCcchhhhhhHhHHHHHHHHhc-cCchhhhhhcccCCC
Q 026491 170 VSTVLSTIYIVIAIWLSVRDGLKNPARDYSIPGTTATKIFESIGACANLVFAFN-TGMLPEIQVREEFRS 238 (238)
Q Consensus 170 ~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~gi~~Fafg-~~v~p~I~~~M~~~~ 238 (238)
++.+....+.++++...+......+...+.. .....+++.+.++++++|||. |....++++||||||
T Consensus 157 ~s~~~~~~fv~~vv~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El~~~s 224 (411)
T KOG1305|consen 157 LSLASVVYFVVLVVYKYFQGPCALGRLSYLV--PNLSSFSSLFYALPIFVFAFTCHSNVFPIYNELKDRS 224 (411)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCCccccc--CCcchhhhhhhhhhhhheeeeccccceeeeeeeeCch
Confidence 9987655554444433333221011111111 111123678999999999995 877778999999997
No 8
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=99.93 E-value=2.5e-24 Score=195.63 Aligned_cols=219 Identities=17% Similarity=0.110 Sum_probs=174.0
Q ss_pred cccccchhHHHHHHHHhhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCCcccCcHHHHHHHHc
Q 026491 14 HLEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIY 93 (238)
Q Consensus 14 ~~~~~~s~~~a~~~l~~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~~~~~~~~~~sY~~l~~~~~ 93 (238)
..+.+.+..+++.++.++.+|+|+|++|++ ++..|++++++++++.+..++++.+++.++..+.+++..+|.+++++.+
T Consensus 4 ~~~~~~s~~~~vl~l~gT~IGAGvL~lP~a-~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~~~~~~~~~~~~~~ 82 (415)
T COG0814 4 SMKKTSSDLGGVLILAGTAIGAGVLFLPVA-FGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPNGKASITSLVEDYL 82 (415)
T ss_pred cccCCcchHHHHHHHHccccccchhhhhHH-hcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHh
Confidence 455677899999999999999999999999 9999999999999999999999999999997655443358999999999
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhcCCChhhHHHHHHHHHH
Q 026491 94 GRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTV 173 (238)
Q Consensus 94 G~~~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~~lpl~~l~~l~~l~~~S~~~~~ 173 (238)
||+++++.++...+.+++.+.+|.+..||.+++.++.... .+...++.+.+++..++ .++++.++...+++.|.+...
T Consensus 83 G~~~~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~-~~~~~r~~~~lif~~~~-~~l~~~~~~~~lk~ts~l~~~ 160 (415)
T COG0814 83 GKKGGILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQFG-LNPLPRKLGSLIFALVL-AFLSWLGTLAVLKITSLLVFG 160 (415)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhhcc-cCCcchHHHHHHHHHHH-HHHHHhchhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999986431 11266777788888777 689999999999999999976
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCcCCCCCCcchhhhhhHhHHHHHHHHhc-cCchhhhhhcccCCC
Q 026491 174 LSTIYIVIAIWLSVRDGLKNPARDYSIPGTTATKIFESIGACANLVFAFN-TGMLPEIQVREEFRS 238 (238)
Q Consensus 174 ~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~gi~~Fafg-~~v~p~I~~~M~~~~ 238 (238)
.....++ .....+.+. +++.....+.........+..++|+++|||+ |.++|+++++||+++
T Consensus 161 ~v~~~~~-l~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~ 223 (415)
T COG0814 161 KVIYLVL-LVVYLIPHW--NPANLFALPSASQSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNS 223 (415)
T ss_pred HHHHHHH-HHHHHhccc--CHHHHhcccccchhhHHHHHHHhhHHHhhhhCCccchHHHHHhccch
Confidence 5433332 222222211 1110000000112334567889999999998 999999999999874
No 9
>PRK10483 tryptophan permease; Provisional
Probab=99.71 E-value=1.4e-15 Score=137.40 Aligned_cols=214 Identities=12% Similarity=0.083 Sum_probs=147.7
Q ss_pred cccccchhHHHHHHHHhhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCCcccCcHHHHHHHHc
Q 026491 14 HLEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIY 93 (238)
Q Consensus 14 ~~~~~~s~~~a~~~l~~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~~~~~~~~~~sY~~l~~~~~ 93 (238)
+++++++.+++..-+..+.+|+||||+|.+ .++.|+.++++++++++....||..++.+...+.+ +..++..++|+.+
T Consensus 6 ~~~~~~~~~g~~~iIaGT~IGaGMLaLP~~-~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~-~g~~~~tma~~~L 83 (414)
T PRK10483 6 TTQTSPSLLGGVVIIGGTIIGAGMFSLPVV-MSGAWFFWSMAALIFTWFCMLHSGLMILEANLNYR-IGSSFDTITKDLL 83 (414)
T ss_pred cccCCCcHHHHHHHHHHchHhHHHHHHHHH-HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCHHHHHHHHc
Confidence 467788999999999999999999999999 99999999999999999999999999999855443 2468999999999
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhcCCChhhHHHHHHHHHH
Q 026491 94 GRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTV 173 (238)
Q Consensus 94 G~~~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~~lpl~~l~~l~~l~~~S~~~~~ 173 (238)
||+++.+.++......++.+++|+--.||.+++.++... .+.+++.=.+++.++. -...+.. .|...+++-+=..
T Consensus 84 G~~g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~~~---~~i~~~~~~llF~~~~-~~iv~~g-t~~vd~~n~~l~~ 158 (414)
T PRK10483 84 GKGWNVVNGISIAFVLYILTYAYISASGSILHHTFAEMS---LNVPARAAGFGFALLV-AFVVWLS-TKAVSRMTAIVLG 158 (414)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhcC---CCCcHHHHHHHHHHHH-HHHHHhh-hhHHHHHHHHHHH
Confidence 999999999999999999999999999999999886521 1223332233333333 2333333 2555444433222
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCcCCCCCCcchhhhhhHhHHHHHHHHhc-cCchhhhhhcccC
Q 026491 174 LSTIYIVIAIWLSVRDGLKNPARDYSIPGTTATKIFESIGACANLVFAFN-TGMLPEIQVREEF 236 (238)
Q Consensus 174 ~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~gi~~Fafg-~~v~p~I~~~M~~ 236 (238)
..+...++.+ .......+ ++.-.+...........++.++|++++||+ |+++|++.+.+++
T Consensus 159 ~~i~~f~~~~-~~l~~~i~-~~~L~~~~~~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~~ 220 (414)
T PRK10483 159 AKVITFFLTF-GSLLGHVQ-PATLFNVAESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYGK 220 (414)
T ss_pred HHHHHHHHHH-HHHHhhcC-HHHHhccccccchhHHHHHHHHHHHHhhccCCCcchHHHHHhCc
Confidence 1111111111 11111111 000000000111112236789999999999 9999999988765
No 10
>PRK09664 tryptophan permease TnaB; Provisional
Probab=99.70 E-value=2.1e-15 Score=136.27 Aligned_cols=209 Identities=16% Similarity=0.089 Sum_probs=144.6
Q ss_pred cccchhHHHHHHHHhhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCCcccCcHHHHHHHHcCc
Q 026491 16 EMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYGR 95 (238)
Q Consensus 16 ~~~~s~~~a~~~l~~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~~~~~~~~~~sY~~l~~~~~G~ 95 (238)
|+|.+..+++.-+..+.+|+||||+|.+ .++.|+.++++++++++....||..++.+...+.+ +..++..++|+.+||
T Consensus 6 ~~~~~~~gg~~iIaGT~IGAGMLaLP~~-~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~-~g~~l~tma~~~LG~ 83 (415)
T PRK09664 6 EKKHSAFWGVMVIAGTVIGGGMFALPVD-LAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNYP-VGSSFNTITKDLIGN 83 (415)
T ss_pred hhccchhhhhHHhhhccHhHHHHHHHHH-HhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCHHHHHHHHcCh
Confidence 4455888899999999999999999999 99999999999999999999999999999865443 346899999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHH
Q 026491 96 RAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVLS 175 (238)
Q Consensus 96 ~~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~~lpl~~l~~l~~l~~~S~~~~~~~ 175 (238)
+++.+.++......++.+++|+--.|+.+++.++... +.+.+.+.-.++++.+. -+..+..+ |...+.+-+=....
T Consensus 84 ~g~~i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~--~~~i~~~~~~llF~~~~-~~~v~~gt-~~vd~~nr~l~~~~ 159 (415)
T PRK09664 84 TWNIISGITVAFVLYILTYAYISANGAIISETISMNL--GYHANPRIVGICTAIFV-ASVLWISS-LAASRITSLFLGLK 159 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhhc--cCCCcHHHHHHHHHHHH-HHHHHhch-hHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999886521 11223332233444433 23334443 55444443322111
Q ss_pred HHHHHHHHHHHhhcCCCCCCCcCC-CCCCc-ch---h-hhhhHhHHHHHHHHhc-cCchhhhhhcccC
Q 026491 176 TIYIVIAIWLSVRDGLKNPARDYS-IPGTT-AT---K-IFESIGACANLVFAFN-TGMLPEIQVREEF 236 (238)
Q Consensus 176 ~~~~~i~~~~~i~~~~~~~~~~~~-~~~~~-~~---~-~~~~~~a~gi~~Fafg-~~v~p~I~~~M~~ 236 (238)
+...++.+ .... |+.+.+ +...+ .. . ...++.++|+++++|| |+++|++.+.+++
T Consensus 160 ii~f~~~~-~~l~-----~~i~~~~L~~~~~~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~~ 221 (415)
T PRK09664 160 IISFVIVF-GSFF-----FQVDYSILRDATSTTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYGK 221 (415)
T ss_pred HHHHHHHH-HHHh-----hcccHHHHhcCccccccchHHHHHHHHHHHHHHhhhCCCcchHHHHHhCc
Confidence 11111111 1111 111111 11101 00 1 1236679999999999 9999999887764
No 11
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=99.67 E-value=8.1e-15 Score=132.60 Aligned_cols=210 Identities=13% Similarity=0.045 Sum_probs=144.9
Q ss_pred ccchhHHHHHHHHhhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCCcccCcHHHHHHHHcCcc
Q 026491 17 MLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYGRR 96 (238)
Q Consensus 17 ~~~s~~~a~~~l~~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~~~~~~~~~~sY~~l~~~~~G~~ 96 (238)
+|.+.+++++-+..+.+|+|+|+||.+ .+..|+.+.++.+++.+.+.+||..++.|...+.++ ..+|.+++++.+||+
T Consensus 1 ~~~~~~~~~~li~GTaIGAGmLaLP~~-~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~~-~~~~~~~a~~~lG~~ 78 (394)
T PF03222_consen 1 KNNSILGGVLLIAGTAIGAGMLALPIA-TAGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNTPE-GSSLTSMAEKYLGKK 78 (394)
T ss_pred CCchHHHHHHHHHHccHhHHHHHHHHH-HHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCHHHHHHHHhChH
Confidence 356888999999999999999999999 999999999999999999999999999998543332 468999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHH
Q 026491 97 AYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVLST 176 (238)
Q Consensus 97 ~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~~lpl~~l~~l~~l~~~S~~~~~~~~ 176 (238)
++++..+...+..++.+++|..-.|+.+++.++.... .+.+++.-.+++.++. -.+... .-|.+...+-+-+...+
T Consensus 79 g~~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~--~~~~~~~~~~~f~~i~-~~iv~~-g~~~v~~~n~~lv~~~i 154 (394)
T PF03222_consen 79 GGIVIGISYLFLLYALLVAYISGGGSILSSLLGNQLG--TDLSPWLSSLLFTIIF-GGIVYF-GTKAVDRINRVLVFGMI 154 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcC--CCCcHHHHHHHHHHHH-HHHHHh-hHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999876542 2233333223333222 122222 22344444333322211
Q ss_pred HHHHHHHHHHhhcCCCCCCCcCCCC-CCcchhhhhhHhHHHHHHHHhc-cCchhhhhhcccC
Q 026491 177 IYIVIAIWLSVRDGLKNPARDYSIP-GTTATKIFESIGACANLVFAFN-TGMLPEIQVREEF 236 (238)
Q Consensus 177 ~~~~i~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~a~gi~~Fafg-~~v~p~I~~~M~~ 236 (238)
......+...+.+.. .+.-.. .....++..++.++|+.++||+ |+++|++.+.+++
T Consensus 155 ~~~~~l~~~~~p~~~----~~~L~~~~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~ 212 (394)
T PF03222_consen 155 ISFIILVVYLIPHWN----PSNLLDAPPSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLGG 212 (394)
T ss_pred HHHHHHHHHHhhhcC----HHHhhccccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCc
Confidence 111111111222111 110001 1111234456789999999999 9999999888774
No 12
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=99.65 E-value=1.7e-14 Score=130.47 Aligned_cols=207 Identities=14% Similarity=0.092 Sum_probs=143.3
Q ss_pred cchhHHHHHHHHhhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCCcccCcHHHHHHHHcCccc
Q 026491 18 LDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYGRRA 97 (238)
Q Consensus 18 ~~s~~~a~~~l~~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~~~~~~~~~~sY~~l~~~~~G~~~ 97 (238)
|++.+++.+-+..+.+|+|+|+||.+ .+..|+.++++++++++.+..|+.+++.|...+.+ +..++.+++|+.+||++
T Consensus 2 ~~~~~g~~~li~GTaIGAGmLaLPi~-~~~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~~-~~~~~~~~a~~~LG~~g 79 (403)
T PRK15132 2 KNRTLGSIFIVAGTTIGAGMLAMPLA-AAGVGFSVTLILLIGLWALMCYTALLLLEVYQHVP-ADTGLGTLAKRYLGRYG 79 (403)
T ss_pred CccHHHHHHHHHhcchhHHHHHHHHH-HHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CCCCHHHHHHHHhChHH
Confidence 34788999999999999999999999 99999999999999999999999999999754332 34689999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHH
Q 026491 98 YALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVLSTI 177 (238)
Q Consensus 98 ~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~~lpl~~l~~l~~l~~~S~~~~~~~~~ 177 (238)
+++.++......+..+.+|..-.|+.+.+..+++.. ...+.....+++.++. -...+.. -|..-+++-+=....+.
T Consensus 80 ~~i~~~~y~fl~y~ll~AYisg~g~il~~~l~~~~~--~~i~~~~~~l~F~~~~-~~iv~~g-~~~v~~~n~~L~~~~ii 155 (403)
T PRK15132 80 QWLTGFSMMFLMYALTAAYISGAGELLASSISDWTG--ISMSPTAGVLLFTLVA-GGVVCVG-TSSVDLFNRFLFSAKII 155 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhcc--CCCChHHHHHHHHHHH-HHHHhcc-HHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988876542 2233344455554443 1222333 24444333332211111
Q ss_pred HHHHHHHHHhhcCCCCCCCcCCCCCCcchhhhhhHhHHHHHHHHhc-cCchhhhhhcccC
Q 026491 178 YIVIAIWLSVRDGLKNPARDYSIPGTTATKIFESIGACANLVFAFN-TGMLPEIQVREEF 236 (238)
Q Consensus 178 ~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~gi~~Fafg-~~v~p~I~~~M~~ 236 (238)
..+......+.+.. .+ .+...+... .-++.++|+++|||| |+++|++.+.+++
T Consensus 156 ~~~~~~~~l~p~~~----~~-~L~~~~~~~-~~~~~~iPvl~~SFgfh~iIpsl~~y~~~ 209 (403)
T PRK15132 156 FLVVMLALMMPHIH----KV-NLLTLPLQQ-GLALSAIPVIFTSFGFHGSVPSIVSYMGG 209 (403)
T ss_pred HHHHHHHHHHHhcC----HH-HHhcCCccc-cHHHHHHHHHHHHhhCCcccHHHHHHhCc
Confidence 11111111122111 00 111001100 126789999999999 9999999988764
No 13
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.61 E-value=2.9e-14 Score=128.25 Aligned_cols=204 Identities=12% Similarity=0.030 Sum_probs=144.2
Q ss_pred HHHHHhhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCCcccCcHHHHHHHHcCccchhHHHHH
Q 026491 25 GFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYGRRAYALTWGL 104 (238)
Q Consensus 25 ~~~l~~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~~~~~~~~~~sY~~l~~~~~G~~~~~~v~~~ 104 (238)
+..+.++++|+|++++|.+ +++.|+.++.+.+++.+.++.++..++.+...+.. +..+|.+.+++++||++++++++.
T Consensus 3 ~~lv~gt~IGaGIl~lP~~-~a~~g~~~~~~~~i~~~~~~~~~~l~~~el~~~~p-~~~~~~~~~~~~~G~~~g~~~~~~ 80 (381)
T TIGR00837 3 ALIIAGTTIGAGMLALPTS-TAGAWFIWTLLLLILLWFLMLHSGLLLLEVYLTYP-GGASFNTIAKDLLGKTGNIIAGLS 80 (381)
T ss_pred eEEeehhhHhHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCCHHHHHHHHhCHHHHHHHHHH
Confidence 3456789999999999999 99999999999999999999999999999854332 235899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 026491 105 QYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVLSTIYIVIAIW 184 (238)
Q Consensus 105 ~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~~lpl~~l~~l~~l~~~S~~~~~~~~~~~~i~~~ 184 (238)
..+.++..+++|.+..++.+..+++.+..+ ....+.+.+++.+++ .++ ..+..|..+.++.+.....+...++.+.
T Consensus 81 ~~~~~~~~~~ay~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~v~-~~l-~~~G~~~~~~v~~i~~~~~l~~l~~~ii 156 (381)
T TIGR00837 81 LLFVLYILTYAYISGGGSILSRLIGEYFGF--PWSARAIVLIFTVLF-GSF-VWLSTSAVDRITRVLIFGKIIAFALVFS 156 (381)
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHhcCC--CccHHHHHHHHHHHH-HHH-HHhchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988754321 233333344444333 344 3455678888777776544443333222
Q ss_pred HHhhcCCCCCCCcCCCCCCcchhhhhhHhHHHHHHHHhc-cCchhhhhhcccCC
Q 026491 185 LSVRDGLKNPARDYSIPGTTATKIFESIGACANLVFAFN-TGMLPEIQVREEFR 237 (238)
Q Consensus 185 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~gi~~Fafg-~~v~p~I~~~M~~~ 237 (238)
..+.+.+.+ +............+++.++++..++|| |.++|++.++|+|+
T Consensus 157 ~~~~~~~~~---~~~~~~~~~~~~~~~~~a~~~~~~~fg~~~~i~~~~~~~~~~ 207 (381)
T TIGR00837 157 GLLPHVKGD---LLLDVALDTSYWPYILSALPVCLTSFGFHGNVPSLYKYYDGN 207 (381)
T ss_pred HHHhhccHH---HHhcCccccccHHHHHHHHHHHHHHHHcccccHHHHHHhccC
Confidence 233322110 000000001123456788999999998 88899988888643
No 14
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=99.53 E-value=1.6e-12 Score=117.98 Aligned_cols=208 Identities=12% Similarity=0.024 Sum_probs=134.4
Q ss_pred HHHHHhhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCCcccCcHHHHHHHHcCccchhHHHHH
Q 026491 25 GFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYGRRAYALTWGL 104 (238)
Q Consensus 25 ~~~l~~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~~~~~~~~~~sY~~l~~~~~G~~~~~~v~~~ 104 (238)
...+..+.+|+|+|+||-. ....|..+.++++++...+++|+.+.|.|......++..+|.+++++.+||+++.+.++.
T Consensus 25 ~l~l~GTAIGAGmLfLPI~-~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~~~~~~i~~v~~~~lG~~g~~i~~il 103 (443)
T PRK13629 25 TLGLFGTAIGAGVLFFPIR-AGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSNPSGNITETVEEHFGKTGGVVITFL 103 (443)
T ss_pred HHHHHHHHHhHHHHHHHHH-HhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHcChhHHHHHHHH
Confidence 3779999999999999999 999999999999999999999999999998443223346899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 026491 105 QYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVLSTIYIVIAIW 184 (238)
Q Consensus 105 ~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~~lpl~~l~~l~~l~~~S~~~~~~~~~~~~i~~~ 184 (238)
.++..+-.+.+|.....+.+.....++. +....++....+++.+.+ .......+ |.+-+++-+=+..-+...+....
T Consensus 104 Yff~ly~ll~aY~~~itn~l~sfl~~ql-~~~~~~r~l~slifv~~l-~~iv~~G~-~~v~kv~~~Lv~~~i~~l~~l~~ 180 (443)
T PRK13629 104 YFFAICPLLWIYGVTITNTFMTFWENQL-GFAPLNRGFVALFLLLLM-AFVIWFGK-DLMVKVMSYLVWPFIASLVLISL 180 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcCCccHHHHHHHHHHHH-HHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999888888877554432 111233333344443333 23323332 44444433322111111111111
Q ss_pred HHhhcCCCCCCCcCCC---CCCcchh-hhhhHhHHHHHHHHhc-cCchhhhhhcccC
Q 026491 185 LSVRDGLKNPARDYSI---PGTTATK-IFESIGACANLVFAFN-TGMLPEIQVREEF 236 (238)
Q Consensus 185 ~~i~~~~~~~~~~~~~---~~~~~~~-~~~~~~a~gi~~Fafg-~~v~p~I~~~M~~ 236 (238)
..+.+...+.-.+.+. +...... ...+..++|+++|+|+ |+.+|++...+|+
T Consensus 181 ~LiP~w~~~~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~ 237 (443)
T PRK13629 181 SLIPYWNSAVIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKRE 237 (443)
T ss_pred HHHHHcCHHHHhcCccccccccccccHHHHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 2222221100000000 0000001 1236778999999999 8999998888544
No 15
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=99.36 E-value=1.5e-10 Score=104.85 Aligned_cols=200 Identities=15% Similarity=0.023 Sum_probs=134.0
Q ss_pred HHHHHhhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCCcccCcHHHHHHHHcCccchhHHHHH
Q 026491 25 GFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYGRRAYALTWGL 104 (238)
Q Consensus 25 ~~~l~~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~~~~~~~~~~sY~~l~~~~~G~~~~~~v~~~ 104 (238)
.+.+..+.+|+|+|++|.. .++.||...++..++...+++++.+++.|.......+..++.|++++.|||+++.+.++.
T Consensus 9 ~~~l~gt~IGaGiL~LP~~-ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~~p~~~i~~~~~~~fGk~~G~ii~~l 87 (397)
T TIGR00814 9 MLGLYGTAIGAGVLFLPIQ-AGLGGLWVLVLMAIIAYPLTYFGHRALARFLLSSKNPCEDITEVVEEHFGKNWGILITLL 87 (397)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHcCHHHHHHHHHH
Confidence 5678899999999999999 999999999998988888999999999887332222246899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 026491 105 QYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVLSTIYIVIAIW 184 (238)
Q Consensus 105 ~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~~lpl~~l~~l~~l~~~S~~~~~~~~~~~~i~~~ 184 (238)
.....+..+.+|....++.+.+........+ ...+ +.....+++++-.......+.+..++-+-....+...++...
T Consensus 88 Y~~~~~~i~~aY~~~~~~~~~~fl~~~~~~~--~p~~-~i~~lilv~il~~iv~~G~~~i~r~~~il~~~~ii~l~~l~~ 164 (397)
T TIGR00814 88 YFFAIYPILLIYSVAITNDSASFLVNQLGTA--PPLR-GLLSLALILILVAIMSFGEKLLFKIMGPLVFPLVLILVLLSL 164 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CcHH-HHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988876543211 1222 222211211112333446677766666554322222222222
Q ss_pred HHhhcCCCCCCCcCCCCCCcchhhhhhHhHHHHHHHHhc-cCchhhhh
Q 026491 185 LSVRDGLKNPARDYSIPGTTATKIFESIGACANLVFAFN-TGMLPEIQ 231 (238)
Q Consensus 185 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~gi~~Fafg-~~v~p~I~ 231 (238)
..+.+.+. +.-...+ .......++..+.+..+|||+ |..+|++.
T Consensus 165 ~lip~~~~--~~L~~~p-~~~~~~~~i~~alpv~~~SF~~~~iIssl~ 209 (397)
T TIGR00814 165 YLIPHWNG--ANLTTFP-SFNGFLKTLWLTIPVMVFSFNHSPIISSFA 209 (397)
T ss_pred HHHHHcCH--HHHhcCC-cccchHHHHHHHHHHHHHHHHccccchHHH
Confidence 33332211 0000001 011123457789999999997 89999886
No 16
>PRK10655 potE putrescine transporter; Provisional
Probab=98.81 E-value=1.6e-06 Score=79.51 Aligned_cols=212 Identities=12% Similarity=-0.013 Sum_probs=112.8
Q ss_pred ccccchhHHHHHHHHhhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhc---cccCCcccCcHHHHHHH
Q 026491 15 LEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKL---HEFGGKRHIRYRDLAGH 91 (238)
Q Consensus 15 ~~~~~s~~~a~~~l~~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~---~~~~~~~~~sY~~l~~~ 91 (238)
++||-+.+++..-.+.+++|+|++.+|.. +++.|- .+++..++.+++.+.......+. .++.| ..-+-+++
T Consensus 4 ~~~~l~~~~~~~l~vg~~iGsGif~~p~~-~~~~G~-~~~~~w~i~~~~~~~~a~~~aeL~~~~P~~G----G~y~y~~~ 77 (438)
T PRK10655 4 KSNKMGVVQLTILTAVNMMGSGIIMLPTK-LAQVGT-ISILSWLVTAVGSMALAYAFAKCGMFSRKSG----GMGGYAEY 77 (438)
T ss_pred ccCcccHHHHHHHHHHhhhhhHHHHhHHH-HHHhhH-HHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC----chHHHHHH
Confidence 56778999999999999999999999998 888886 56777777777766666666654 23332 33455568
Q ss_pred HcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhcCCChhhHHHHHHHH
Q 026491 92 IYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVS 171 (238)
Q Consensus 92 ~~G~~~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~~lpl~~l~~l~~l~~~S~~~ 171 (238)
.+||+...++.....+.......+.-+...+.+..+++. .......+.+...++..+-..-.+..|..+.+..+.
T Consensus 78 ~~G~~~gf~~gw~~~~~~~~~~~~~a~~~~~y~~~~~~~-----~~~~~~~~~~~~~~l~~~~~ln~~g~~~~~~i~~i~ 152 (438)
T PRK10655 78 AFGKSGNFMANYTYGVSLLIANVAIAISAVGYGTELFGA-----TLSPVQICLATIGVLWLCTVANFGGARITGQISSVT 152 (438)
T ss_pred HcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----ccchHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 899988877777665544433333333334444443321 111112222222111101111223444444444433
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCcCCCCCCcchhhhhhHhHHHHHHHHh-ccCchhhhhhcccCCC
Q 026491 172 TVLSTIYIVIAIWLSVRDGLKNPARDYSIPGTTATKIFESIGACANLVFAF-NTGMLPEIQVREEFRS 238 (238)
Q Consensus 172 ~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~gi~~Faf-g~~v~p~I~~~M~~~~ 238 (238)
....+.-.++...........+ ..+....+.......++..++....|+| |......+-+|+|||.
T Consensus 153 ~~~~l~~l~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~ 219 (438)
T PRK10655 153 VWGVIIPVVGLSIIGWFWFSPS-LYVAAWNPHHLPFFSAVGSSIAMTLWAFLGLESACANSDAVENPE 219 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhCcc-cccCCcCccCCchHHHHHHHHHHHHHHHhhhhhhhhhHHHhhCcc
Confidence 3222221111111111111110 0010111111111234566788889999 5777777888888873
No 17
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=98.72 E-value=1.6e-06 Score=79.94 Aligned_cols=213 Identities=14% Similarity=0.097 Sum_probs=122.1
Q ss_pred cccccchhHHHHHHHHhhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccc-cCCcccCcHHHHHHHH
Q 026491 14 HLEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHE-FGGKRHIRYRDLAGHI 92 (238)
Q Consensus 14 ~~~~~~s~~~a~~~l~~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~~~-~~~~~~~sY~~l~~~~ 92 (238)
+.+|+-+.++...-.+.+++|+|++.+|..+.++.|. .+++..++.+++.+.....+.+... .+. .-...+.+++.
T Consensus 9 ~~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~G~-~~~i~~~i~~v~~~~~a~~~aEl~s~~P~--~Gg~~~~~~~~ 85 (452)
T TIGR01773 9 KLPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIASAGP-AALLAYLLAGLLVVFIMRMLGEMAVANPD--TGSFSTYADDA 85 (452)
T ss_pred hHhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCHHHHHHHH
Confidence 3566679999999999999999999999554888886 4677777777777766666666522 121 12466778899
Q ss_pred cCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhcCCChhhHHHHHHHHH
Q 026491 93 YGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVST 172 (238)
Q Consensus 93 ~G~~~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~~lpl~~l~~l~~l~~~S~~~~ 172 (238)
+||+..+++.....+.....+.+.....++.++.+++ + . ..|.+...+..+.-+.-.+..|..+.+..+..
T Consensus 86 ~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~~-----~--~--~~~~~~~~~~~~~~~~n~~gv~~~~~~~~~~~ 156 (452)
T TIGR01773 86 IGRWAGFTIGWLYWWFWVLVIPLEAIAAAGILQYWFP-----D--I--PLWLFSLILTIVLTLTNLYSVKSYGEFEFWFA 156 (452)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----c--C--cHHHHHHHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 9999988888887776666666666666666665432 1 1 23333222222111112233444444443332
Q ss_pred HHHHHHHH--HHHHH-HhhcCCCCCCCc-C-CCC---CCcchhhhhhHhHHHHHHHHh-ccCchhhhhhcccCCC
Q 026491 173 VLSTIYIV--IAIWL-SVRDGLKNPARD-Y-SIP---GTTATKIFESIGACANLVFAF-NTGMLPEIQVREEFRS 238 (238)
Q Consensus 173 ~~~~~~~~--i~~~~-~i~~~~~~~~~~-~-~~~---~~~~~~~~~~~~a~gi~~Faf-g~~v~p~I~~~M~~~~ 238 (238)
+..+...+ ++... ....+.+..+.. . +.. +..+..+.+++.++....|+| |......+-+|+|||.
T Consensus 157 ~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~~a~E~k~P~ 231 (452)
T TIGR01773 157 LIKVIAIIAFIILGAVAIFGFAPGSEVSGFSNLTGKGGFFPNGIGAVLLAILVTMFSFMGTEIVTIAAAESSNPI 231 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhccHHHHhHHHHhhcChh
Confidence 22111111 11111 111111110000 0 011 111112235778899999999 5777888889999873
No 18
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=98.72 E-value=3.1e-06 Score=77.65 Aligned_cols=210 Identities=16% Similarity=0.050 Sum_probs=109.0
Q ss_pred cccccchhHHHHHHHHhhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhc---cccCCcccCcHHHHHH
Q 026491 14 HLEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKL---HEFGGKRHIRYRDLAG 90 (238)
Q Consensus 14 ~~~~~~s~~~a~~~l~~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~---~~~~~~~~~sY~~l~~ 90 (238)
.++||-+.++...-.+.+++|+|++.+|.. .++.|-. .++..++.++...-......+. +++.| -.|. -++
T Consensus 2 ~~~~~lg~~~~~~l~vg~~IGsGif~lp~~-~a~~G~~-~i~~wli~~~~~l~~al~~aEL~s~~P~~G---G~y~-y~~ 75 (435)
T PRK10435 2 SSAKKIGLFACTGVVAGNMMGSGIALLPAN-LASIGSI-AIWGWIISIIGAMSLAYVYARLATKNPQQG---GPIA-YAG 75 (435)
T ss_pred CCCCcCCHHHHHHHHHhhHHHHHHHHHHHH-HHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCC---ChhH-HHH
Confidence 467788999999999999999999999999 8888752 4445555555554444444444 33322 1233 335
Q ss_pred HHcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhcCCChhhHHHHHHH
Q 026491 91 HIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGV 170 (238)
Q Consensus 91 ~~~G~~~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~~lpl~~l~~l~~l~~~S~~ 170 (238)
+ +||...+++........+-...++.+..++.+..+++... .... .+++...++.++-+.-.+..|..+.++.+
T Consensus 76 ~-~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~y~~~~~p~~~---~~~~--~~~~~~~i~~~~~~ln~~gvk~~~~i~~i 149 (435)
T PRK10435 76 E-ISPAFGFQTGVLYYHANWIGNLAIGITAVSYLSTFFPVLN---DPIP--AGIACIAIVWVFTFVNMLGGTWVSRLTTI 149 (435)
T ss_pred H-HCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccC---ChHH--HHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 5 7998877777665543433333444445555555443221 1111 11111111110111223444555554444
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCC-CCCcCCCCCCcchhhhhhHhHHHHHHHHh-ccCchhhhhhcccCC
Q 026491 171 STVLSTIYIVIAIWLSVRDGLKN-PARDYSIPGTTATKIFESIGACANLVFAF-NTGMLPEIQVREEFR 237 (238)
Q Consensus 171 ~~~~~~~~~~i~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~a~gi~~Faf-g~~v~p~I~~~M~~~ 237 (238)
..+..+...+........+..++ ...++. +.......++..++....|+| |.......-+|+|||
T Consensus 150 ~~~~~li~~~~~~i~g~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP 216 (435)
T PRK10435 150 GLVLVLIPVVGTAIVGWHWFDAATYAANWN--TSDTTDGHAIIKSILLCLWAFVGVESAAVSTGMVKNP 216 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHcCHHhhccccc--CCCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCc
Confidence 33222211111111111111110 000111 111123456778899999999 577778888888887
No 19
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=98.69 E-value=6.2e-06 Score=76.51 Aligned_cols=213 Identities=13% Similarity=0.077 Sum_probs=110.2
Q ss_pred cccchhHHHHHHHHhhhhhhhhhhhhHHhhhh-hhhHHHHHHHHHHHHHHHHHHHHHHhc---ccc-CCcccCcHHHHHH
Q 026491 16 EMLDSWFQVGFVLTTGINSAYVLGYPGTVMVP-LGWIAGVVGLIIATIVSLNANALIAKL---HEF-GGKRHIRYRDLAG 90 (238)
Q Consensus 16 ~~~~s~~~a~~~l~~~~iG~GiLalP~a~~~~-~G~~~G~i~l~~~~~~~~yt~~lL~~~---~~~-~~~~~~sY~~l~~ 90 (238)
+|+-+.+++....+++++|+|++.+|.. .++ .|-...++..++.+++.........+. .++ .| ..-+..+
T Consensus 6 ~~~l~~~~~~~l~ig~vIGsGif~~~~~-~~~~~g~~~~~~~wli~~~~~~~~al~~aEl~s~~P~~sG----G~y~y~~ 80 (473)
T TIGR00905 6 SKKLGLFALTALVIGSMIGSGIFSLPQN-LASVAGPGAVIIGWIITGVGMLALAFVFAILATKKPELDG----GIYAYAR 80 (473)
T ss_pred CCCccHHHHHHHHHHHHHhHHHHHhHHH-HHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC----ChhhhHH
Confidence 5678999999999999999999999998 554 432222344555555555554444444 333 33 2334558
Q ss_pred HHcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhcCCChhhHHHHHHH
Q 026491 91 HIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGV 170 (238)
Q Consensus 91 ~~~G~~~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~~lpl~~l~~l~~l~~~S~~ 170 (238)
+.+||+..++......+.......++.....+.+..+++.+. ++ .....++....+..++-..-.+..|..+.+..+
T Consensus 81 ~~~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~~~-~~--~~~~~~~~~~~~~~~~~~ln~~Gi~~~~~i~~~ 157 (473)
T TIGR00905 81 EGFGPYIGFMSGWGYWLSAWIGNVAYAVLLFSALGYFFPLFG-SG--NPVPSILGASVLLWVFTFLVLRGVRQAAFINTI 157 (473)
T ss_pred hHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-CC--CcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 889999888887777665544455566666666666655322 11 111112211111111122234566666666665
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCC-CCCcCCCCCCc--chhhhhhHhHHHHHHHHh-ccCchhhhhhcccC
Q 026491 171 STVLSTIYIVIAIWLSVRDGLKN-PARDYSIPGTT--ATKIFESIGACANLVFAF-NTGMLPEIQVREEF 236 (238)
Q Consensus 171 ~~~~~~~~~~i~~~~~i~~~~~~-~~~~~~~~~~~--~~~~~~~~~a~gi~~Faf-g~~v~p~I~~~M~~ 236 (238)
.....+...++.+...+.....+ ...+......+ ......+..++....|+| |......+-+|+||
T Consensus 158 ~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~ 227 (473)
T TIGR00905 158 TTIAKLIPLFLFIIIGWFWFKLDLFTADFWGHDVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRAKN 227 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHhCchhcccccCccCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 54332222222222222111111 00010001011 112335667788899999 55444444444444
No 20
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=98.63 E-value=1e-05 Score=74.39 Aligned_cols=213 Identities=14% Similarity=0.045 Sum_probs=107.5
Q ss_pred cccccchhHHHHHHHHhhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhc---cccCCcccCcHHHHHH
Q 026491 14 HLEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKL---HEFGGKRHIRYRDLAG 90 (238)
Q Consensus 14 ~~~~~~s~~~a~~~l~~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~---~~~~~~~~~sY~~l~~ 90 (238)
+++||-+.+++....+++++|+|++.+|.. .++.|. ..+...++.++...-......+. .++.|- ...| ++
T Consensus 5 ~~~~~lg~~~~~~l~vg~~iGsGif~~~~~-~a~~g~-~~~~~~~i~~~~~l~~al~~aEL~s~~P~aGG-~y~~---~~ 78 (445)
T PRK10644 5 ADAHKVGLIPVTLMVAGNIMGSGVFLLPAN-LASTGG-IAIYGWLVTIIGALGLSMVYAKMSSLDPSPGG-SYAY---AR 78 (445)
T ss_pred ccCCCcCHHHHHHHHHhhHhhhHHHhhHHH-HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC-hhHH---HH
Confidence 467788999999999999999999999998 777664 23344444444444444444443 343331 2223 77
Q ss_pred HHcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhcCCChhhHHHHHHH
Q 026491 91 HIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGV 170 (238)
Q Consensus 91 ~~~G~~~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~~lpl~~l~~l~~l~~~S~~ 170 (238)
+.+||...+++.....+.......+......+.+..+++... ......++...++..+-..-.+..|..+.+..+
T Consensus 79 ~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ln~~gvk~~~~i~~i 153 (445)
T PRK10644 79 RCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILK-----DPLVLTITCVVVLWIFVLLNIVGPKMITRVQAV 153 (445)
T ss_pred HHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-----CcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHH
Confidence 889999887776665554433333333333444443333111 011111111111110111123345665555555
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCcCCCCCCcchhhhhhHhHHHHHHHHh-ccCchhhhhhcccCCC
Q 026491 171 STVLSTIYIVIAIWLSVRDGLKNPARDYSIPGTTATKIFESIGACANLVFAF-NTGMLPEIQVREEFRS 238 (238)
Q Consensus 171 ~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~gi~~Faf-g~~v~p~I~~~M~~~~ 238 (238)
.....+..+++.....+..... +......+......+..+..++....|+| |.......-+|+|||.
T Consensus 154 ~~~~~~i~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~ 221 (445)
T PRK10644 154 ATVLALIPIVGIAVFGWFWFRG-ETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPK 221 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHhCc-hhccCCccccccchHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCcc
Confidence 4332222111111111111111 00000011011112234556788899999 5777788888999873
No 21
>PRK10238 aromatic amino acid transporter; Provisional
Probab=98.63 E-value=4.9e-06 Score=76.86 Aligned_cols=211 Identities=12% Similarity=0.083 Sum_probs=121.0
Q ss_pred cccccchhHHHHHHHHhhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhc---cccCCcccCcHHHHHH
Q 026491 14 HLEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKL---HEFGGKRHIRYRDLAG 90 (238)
Q Consensus 14 ~~~~~~s~~~a~~~l~~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~---~~~~~~~~~sY~~l~~ 90 (238)
+.+|+-+.++...--+++++|+|++-.|..+.++.|- ..++..++.+++.+.....+.+. .+..| ++.+-++
T Consensus 9 ~l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~Gp-~~i~~~~i~gi~~~~v~~s~aEl~s~~P~aG----g~y~~~~ 83 (456)
T PRK10238 9 QLKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGP-GIILGYAIAGFIAFLIMRQLGEMVVEEPVAG----SFSHFAY 83 (456)
T ss_pred hhhccCcHHHHHHHHhhccccchHHHhhHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC----CHHHHHH
Confidence 3466779999999999999999999999876777775 45556666666666666666665 22222 4555567
Q ss_pred HHcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhcCCChhhHHHHHHH
Q 026491 91 HIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGV 170 (238)
Q Consensus 91 ~~~G~~~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~~lpl~~l~~l~~l~~~S~~ 170 (238)
+.+||...+++.....+.....+.+.....++.++.+++ + .....+.+++..++ ..+. ....|..+.++.+
T Consensus 84 ~~~g~~~gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p-----~--~~~~~~~~i~~~~~-~~lN-~~gv~~~~~~~~~ 154 (456)
T PRK10238 84 KYWGSFAGFASGWNYWVLYVLVAMAELTAVGKYIQFWYP-----E--IPTWVSAAVFFVVI-NAIN-LTNVKVFGEMEFW 154 (456)
T ss_pred HHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----c--CcHHHHHHHHHHHH-HHHH-HHhHHHHHHHHHH
Confidence 789999999998888887776666666667776654432 1 11122222222221 1221 2234444444444
Q ss_pred HHHHHHHHHHHHH--HH-HhhcCCCCCCCcC-CC-C--CCcchhhhhhHhHHHHHHHHh-ccCchhhhhhcccCCC
Q 026491 171 STVLSTIYIVIAI--WL-SVRDGLKNPARDY-SI-P--GTTATKIFESIGACANLVFAF-NTGMLPEIQVREEFRS 238 (238)
Q Consensus 171 ~~~~~~~~~~i~~--~~-~i~~~~~~~~~~~-~~-~--~~~~~~~~~~~~a~gi~~Faf-g~~v~p~I~~~M~~~~ 238 (238)
..+..+...++.+ .. .+..+...++... +. + +..+..+.++..+++...|+| |.......-+|+|||.
T Consensus 155 ~~~iki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~aeE~knP~ 230 (456)
T PRK10238 155 FAIIKVIAVVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEADNPE 230 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCccccccCCCCCCccccHHHHHHHHHHHHHHhcCHHHHHHHHHhhcChh
Confidence 3322222111111 11 1122111111110 10 1 111112234556788899999 5788888899999874
No 22
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=98.60 E-value=6.2e-06 Score=76.44 Aligned_cols=213 Identities=12% Similarity=0.044 Sum_probs=118.4
Q ss_pred ccccchhHHHHHHHHhhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCCcccCcHHHHHHHHcC
Q 026491 15 LEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYG 94 (238)
Q Consensus 15 ~~~~~s~~~a~~~l~~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~~~~~~~~~~sY~~l~~~~~G 94 (238)
.+|+-+.++...-.+.+++|+|++-.|..+.++.|. ..++..++.+++.+.....+.+.... +.+..++.+.+++.+|
T Consensus 18 l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~aGp-~~i~~~~i~~i~~~~~~~s~aEl~s~-~~~~~~~~~ya~~~~g 95 (469)
T PRK11049 18 LRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGP-SIIFVYMIIGFMLFFVMRAMGELLLS-NLEYKSFSDFASDLLG 95 (469)
T ss_pred hhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCcHHHHHHHHhC
Confidence 455678999999999999999999998865888887 45666667777666666666555321 1123356788999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhcCCChhhHHHHHHHHHHH
Q 026491 95 RRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVL 174 (238)
Q Consensus 95 ~~~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~~lpl~~l~~l~~l~~~S~~~~~~ 174 (238)
|...+++.....+...-...+.....+..+..++ ++ .....+.+++..++ ..+ -....|..+.+..+....
T Consensus 96 ~~~gf~~gW~~~~~~~~~~~a~~~a~~~~~~~~~-----p~--~~~~~~~~~~~~~~-~~i-N~~g~~~~~~i~~~~~~~ 166 (469)
T PRK11049 96 PWAGYFTGWTYWFCWVVTGIADVVAITAYAQFWF-----PD--LSDWVASLAVVLLL-LSL-NLATVKMFGEMEFWFAMI 166 (469)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CC--CcHHHHHHHHHHHH-HHH-HHHhHHHHHHHHHHHHHH
Confidence 9998888888776654333444444554444332 21 11112222211111 122 223445555554443322
Q ss_pred HHHHHHH--HHHHH-hhcCCCCCCCc-CCC----C--CCcchhhhhhHhHHHHHHHHh-ccCchhhhhhcccCCC
Q 026491 175 STIYIVI--AIWLS-VRDGLKNPARD-YSI----P--GTTATKIFESIGACANLVFAF-NTGMLPEIQVREEFRS 238 (238)
Q Consensus 175 ~~~~~~i--~~~~~-i~~~~~~~~~~-~~~----~--~~~~~~~~~~~~a~gi~~Faf-g~~v~p~I~~~M~~~~ 238 (238)
-+...++ +.+.. ...+...++.+ ... + +..+..+.+++.++....|+| |.......-+|+|||.
T Consensus 167 kl~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~ 241 (469)
T PRK11049 167 KIVAIVALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGMFPKGLSGFFAGFQIAVFAFVGIELVGTTAAETKDPE 241 (469)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhcHHHHHHHHHHhcCHh
Confidence 2111111 11111 11111111100 001 0 110112335778899999999 5788888899999873
No 23
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=98.58 E-value=4.9e-06 Score=74.26 Aligned_cols=146 Identities=14% Similarity=0.119 Sum_probs=92.9
Q ss_pred cchhHHHHHHHHhhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCCcccCcHHHHHHHHcCccc
Q 026491 18 LDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYGRRA 97 (238)
Q Consensus 18 ~~s~~~a~~~l~~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~~~~~~~~~~sY~~l~~~~~G~~~ 97 (238)
|-|.+|..+-+..+.+|+|++.+|.. .++.+--.+.+..++.+++......+..+...+.. ..+..|..++.+||+.
T Consensus 2 ~is~~q~~~l~~~~~iG~gil~~P~~-~~~~a~~~~wi~~ll~~~~~~~~~~~~~~l~~~~p--~~~~~~~~~~~~Gk~~ 78 (359)
T TIGR00912 2 KISSKQLIFLISSTMIGSGLLTLPAL-VSQSAGQDGWISIILGGLIIIFLLCLMIKIMSKFP--EKNFSEILSKYLGKIL 78 (359)
T ss_pred cCcHHHHHHHHHHHHHHHHHHhhhHH-HHhccCCCeeHHHHHHHHHHHHHHHHHHHHHHHCC--CCCHHHHHHHHhhHHH
Confidence 56788999999999999999999997 54432234556667777777777777776644322 2368899999999998
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhcCCChhhHHHHHHHHHHH
Q 026491 98 YALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVL 174 (238)
Q Consensus 98 ~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~~lpl~~l~~l~~l~~~S~~~~~~ 174 (238)
.+++........+..+..-+-..+|.++... . ++ +..|.+....+++.-....+.++.++.++.+-...
T Consensus 79 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l-~~----tp~~~~~l~~l~~~~~~~~~Gi~~i~r~~~i~~~~ 147 (359)
T TIGR00912 79 GRLLSILFILYFFLIAAYLIRIFADFIKTYL---L-PR----TPIIVIIILIIIVSIYIVRKGIEVLLRTAEILLII 147 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---c-CC----CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence 8888877776666665555555566554332 1 11 12333322222211222335777777777666543
No 24
>TIGR00909 2A0306 amino acid transporter.
Probab=98.56 E-value=8.6e-06 Score=74.34 Aligned_cols=213 Identities=11% Similarity=-0.045 Sum_probs=121.2
Q ss_pred cccchhHHHHHHHHhhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCCcccCcHHHHHHHHcCc
Q 026491 16 EMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYGR 95 (238)
Q Consensus 16 ~~~~s~~~a~~~l~~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~~~~~~~~~~sY~~l~~~~~G~ 95 (238)
+|+-+.++...-.+++++|+|++.+|..+.+..|. ...+..++.+++.........+...+..+ .-..-+-.++.+||
T Consensus 2 ~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~-~~~l~~li~~~~~~~~a~~~~el~~~~p~-~Gg~y~~~~~~~G~ 79 (429)
T TIGR00909 2 SRELGLFDLTMLGIGAMIGTGIFVVTGIAAGKAGP-AVILSFVLAGLTALFIALVYAELAAMLPV-AGSPYTYAYEAMGE 79 (429)
T ss_pred CccccHHHHHHHHHhhhhcchHHHhHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCcceeeHHHHhCc
Confidence 57789999999999999999999999763555554 34555666666666666666555221111 11233455677999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCC----Cchh--hH-HHHHHHHHHHHhcCCChhhHHH
Q 026491 96 RAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWK--DDHTM----KLPY--FI-AIAGFVCALFAIGIPNLSALGV 166 (238)
Q Consensus 96 ~~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~~--~~~~~----~~~~--~i-ii~~~~~~lpl~~l~~l~~l~~ 166 (238)
+..++......+.....+..+....++.++.+++.... ++... +... +. +++..++ -..-.+..|..+.
T Consensus 80 ~~g~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~l~~~g~~~~~~ 157 (429)
T TIGR00909 80 LTAFIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVGLDLPAVLTAKPGNGGVFNLPALLIVLFL--TYILYLGAKESGK 157 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhhhcCCcccccccHHHHHHHHHH--HHHHHhCcHHHHH
Confidence 99888888877777667777777788888777653210 11000 0001 11 1111111 2223445677777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcCCCCCCcchhhhhhHhHHHHHHHHh-ccCchhhhhhcccCC
Q 026491 167 WLGVSTVLSTIYIVIAIWLSVRDGLKNPARDYSIPGTTATKIFESIGACANLVFAF-NTGMLPEIQVREEFR 237 (238)
Q Consensus 167 ~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~gi~~Faf-g~~v~p~I~~~M~~~ 237 (238)
++.+.....+...++.+...+.+... + +.+ ........++..++....|+| |........+|+|||
T Consensus 158 ~~~v~~~~~i~~l~~~~~~~~~~~~~-~--~~~--~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p 224 (429)
T TIGR00909 158 VNDILVVLKVAALLLFAALGAIHFAS-N--NYT--PFMPMGFGGVGAATALVFFAFIGFEAISTAAEEVKNP 224 (429)
T ss_pred HHHHHHHHHHHHHHHhhhHHHhhCcH-H--hcC--CCCCCcHHHHHHHHHHHHHHHhhHHHHHhhHHhccCc
Confidence 66666544333332222223322211 1 111 111112345677888999999 666666666777775
No 25
>PRK10580 proY putative proline-specific permease; Provisional
Probab=98.55 E-value=1.9e-05 Score=72.95 Aligned_cols=215 Identities=8% Similarity=-0.001 Sum_probs=116.3
Q ss_pred ccccccchhHHHHHHHHhhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCCcccCcHHHHHHHH
Q 026491 13 FHLEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHI 92 (238)
Q Consensus 13 ~~~~~~~s~~~a~~~l~~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~~~~~~~~~~sY~~l~~~~ 92 (238)
.+.+|+-+.++...-.+.+++|+|++.+|..+.+..|- ..++..++.+++.+.....+.+......+ .-...+.+++.
T Consensus 5 ~~l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~aG~-~~~l~~~i~~i~~~~~a~~~aEl~s~~P~-~Gg~y~y~~~~ 82 (457)
T PRK10580 5 NKLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGP-SVLLAYIIGGVAAYIIMRALGEMSVHNPA-ASSFSRYAQEN 82 (457)
T ss_pred ccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCHHHHHHHH
Confidence 34567779999999999999999999999876777886 46777777777777777777776321111 11344466888
Q ss_pred cCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhcCCChhhHHHHHHHHH
Q 026491 93 YGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVST 172 (238)
Q Consensus 93 ~G~~~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~~lpl~~l~~l~~l~~~S~~~~ 172 (238)
+||...+++.....+.....+.......+..++.++ ++ .....|.+...++. ..+ -.+..|..+.+..+..
T Consensus 83 ~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~-----~~--~~~~~~~~~~~~l~-~~l-n~~gv~~~~~~~~~~~ 153 (457)
T PRK10580 83 LGPLAGYITGWTYCFEILIVAIADVTAFGIYMGVWF-----PT--VPHWIWVLSVVLII-CAV-NLMSVKVFGELEFWFS 153 (457)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CC--CChHHHHHHHHHHH-HHH-HHccchhHHHHHHHHH
Confidence 999988888777665443333333333444433322 11 11223333322222 222 2334454444443322
Q ss_pred HHHHHHH--HHHHH--HHhhcC-CC-CCC-CcCCCCC--CcchhhhhhHhHHHHHHHHh-ccCchhhhhhcccCCC
Q 026491 173 VLSTIYI--VIAIW--LSVRDG-LK-NPA-RDYSIPG--TTATKIFESIGACANLVFAF-NTGMLPEIQVREEFRS 238 (238)
Q Consensus 173 ~~~~~~~--~i~~~--~~i~~~-~~-~~~-~~~~~~~--~~~~~~~~~~~a~gi~~Faf-g~~v~p~I~~~M~~~~ 238 (238)
+..+... +++.. ..+... .. ++. .+...++ .....+.+++.++....|+| |........+|+|||.
T Consensus 154 ~~~~~~l~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~fsf~G~e~~~~~a~E~knP~ 229 (457)
T PRK10580 154 FFKVATIIIMIVAGIGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGEAKDPE 229 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccccCCCCCCCCcchHHHHHHHHHHHHHHhCHHHHHHHHHHhcChh
Confidence 1111111 11111 111111 00 110 0111111 00112335677888999999 5777788888888873
No 26
>PRK11387 S-methylmethionine transporter; Provisional
Probab=98.52 E-value=1.7e-05 Score=73.49 Aligned_cols=103 Identities=12% Similarity=0.087 Sum_probs=70.0
Q ss_pred ccccchhHHHHHHHHhhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhc---cccCCcccCcHHHHHHH
Q 026491 15 LEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKL---HEFGGKRHIRYRDLAGH 91 (238)
Q Consensus 15 ~~~~~s~~~a~~~l~~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~---~~~~~~~~~sY~~l~~~ 91 (238)
.+|+-+.++...-.+..++|+|+...|..+.+..|-...++..++.+++.+.....+.+. +++.| .+-+-+++
T Consensus 12 l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~~G~~~~~l~~~i~~~~~~~~~~~~aELas~~P~aG----G~y~y~~~ 87 (471)
T PRK11387 12 FKRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVYLVMQCLGELSVAMPETG----AFHVYAAR 87 (471)
T ss_pred hhhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC----CHHHHHHH
Confidence 466779999999999999999999999875677775334556666666666666665555 33333 35567778
Q ss_pred HcCccchhHHHHHHHHHHHHHHHHHHHHHH
Q 026491 92 IYGRRAYALTWGLQYVNLFMINTGYIILAG 121 (238)
Q Consensus 92 ~~G~~~~~~v~~~~~i~~~g~~v~yli~~~ 121 (238)
.+||....++.....+.....+..-....+
T Consensus 88 ~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~ 117 (471)
T PRK11387 88 YLGPATGYTVAWLYWLTWTVALGSSLTAAG 117 (471)
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899998777777666655444333333333
No 27
>PRK11021 putative transporter; Provisional
Probab=98.50 E-value=1.8e-05 Score=71.98 Aligned_cols=202 Identities=14% Similarity=0.117 Sum_probs=108.2
Q ss_pred hhHHHHHHHHhhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhc---cccCCcccCcHHHHHHHHcCcc
Q 026491 20 SWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKL---HEFGGKRHIRYRDLAGHIYGRR 96 (238)
Q Consensus 20 s~~~a~~~l~~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~---~~~~~~~~~sY~~l~~~~~G~~ 96 (238)
++|++..-.+++++|+|++.+|..+.+..|- ..++..++.+++.........+. .++.| ....-+++.+||+
T Consensus 2 g~~~~~~l~~g~~IGsGif~~~g~~~~~aG~-~~~~~~~i~~~~~~~~al~~aEl~s~~P~aG----G~y~y~~~~~G~~ 76 (410)
T PRK11021 2 GLWQGIGLLSTSLLGTGVFAVPALAALVAGN-NSLWAWPLLILLIFPIAIVFARLGRHFPHAG----GPAHFVGMAFGPR 76 (410)
T ss_pred cHHHHHHHHHHHHHhhHHHHhHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC----CHHHhHHHHhCch
Confidence 5788999999999999999999986777774 45666666666666666666665 33333 3445567789999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHH
Q 026491 97 AYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVLST 176 (238)
Q Consensus 97 ~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~~lpl~~l~~l~~l~~~S~~~~~~~~ 176 (238)
..++......+.......+.....++.+...++ ..... .+.+...+..++-+.-.+..|..+.+..+..+..
T Consensus 77 ~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~--~~~~~~~~~~~~~~ln~~Gv~~~~~~~~~~~~~~- 148 (410)
T PRK11021 77 LGRVTGWLFLSVIPVGLPAALQIAAGFGQALFG-----WSSWQ--LLLAELLTLALLWLLNLRGASSSANLQTVIALLI- 148 (410)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcC-----CCCch--HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-
Confidence 887777666543322222233333333333321 11111 1221111111111222344555555444432211
Q ss_pred HHHHHHHHHHhhcCCCCCCCcCCCCCCcchhhhhhHhHHHHHHHHh-ccCchhhhhhcccCCC
Q 026491 177 IYIVIAIWLSVRDGLKNPARDYSIPGTTATKIFESIGACANLVFAF-NTGMLPEIQVREEFRS 238 (238)
Q Consensus 177 ~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~gi~~Faf-g~~v~p~I~~~M~~~~ 238 (238)
..+ +...+..+..++. +...++....++.+++.++....|+| |.......-+|+|||.
T Consensus 149 --~~i-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~ 207 (410)
T PRK11021 149 --VAL-VVAIWWAGDIKPA-DIPFPAPGSIEWSGLFAALGVMFWCFVGIEAFAHLASEFKNPE 207 (410)
T ss_pred --HHH-HHHHHHHcCCchh-cCCCCCCCCccHHHHHHHHHHHHHHHhcHHHHHhhHHhccCcc
Confidence 111 1111112211111 11111111123446778899999999 5888888899999873
No 28
>PRK10746 putative transport protein YifK; Provisional
Probab=98.50 E-value=3e-05 Score=71.81 Aligned_cols=214 Identities=12% Similarity=-0.041 Sum_probs=120.4
Q ss_pred CccccccchhHHHHHHHHhhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccc-cCCcccCcHHHHHH
Q 026491 12 FFHLEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHE-FGGKRHIRYRDLAG 90 (238)
Q Consensus 12 ~~~~~~~~s~~~a~~~l~~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~~~-~~~~~~~sY~~l~~ 90 (238)
+++.+|+-+.++...--+.+++|+|++-.|..+.+.+|. ..++..++.+++.+.....+.+... .+. .-++.+-++
T Consensus 5 ~~~l~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~aGp-~~~l~~~i~g~~~~~v~~~~aEl~~~~P~--sGg~~~y~~ 81 (461)
T PRK10746 5 KPELQRGLEARHIELIALGGTIGVGLFMGAASTLKWAGP-SVLLAYIIAGLFVFFIMRSMGEMLFLEPV--TGSFAVYAH 81 (461)
T ss_pred chHHhccCcHHHHHHHHHHhhhhhhHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCHHHHHH
Confidence 344667779999999999999999999999876888886 4556666777777777777766522 221 225777888
Q ss_pred HHcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhcCCChhhHHHHHHH
Q 026491 91 HIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGV 170 (238)
Q Consensus 91 ~~~G~~~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~~lpl~~l~~l~~l~~~S~~ 170 (238)
+.+||+...++.....+.....+...+...+..++.+++ + .....|..+...++ ..+ -.+..|..+.+..+
T Consensus 82 ~~~g~~~Gf~~gw~~~~~~~~~~~~~~~a~~~~l~~~~p-----~--~~~~~~~~~~~~~~-~~l-N~~gv~~~~~~e~~ 152 (461)
T PRK10746 82 RYMSPFFGYLTAWSYWFMWMAVGISEITAIGVYVQFWFP-----E--MAQWIPALIAVALV-ALA-NLAAVRLYGEIEFW 152 (461)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-----C--CchHHHHHHHHHHH-HHH-HHHhHHHHHHHHHH
Confidence 899999888888777776655555555555555554432 1 22223333322222 122 12233333333222
Q ss_pred ----HHHHHHHHHHHHHHHHhhc-CCCCCCC---cCCCC-CCcchhhhhhHhHHHHHHHHh-ccCchhhhhhcccCC
Q 026491 171 ----STVLSTIYIVIAIWLSVRD-GLKNPAR---DYSIP-GTTATKIFESIGACANLVFAF-NTGMLPEIQVREEFR 237 (238)
Q Consensus 171 ----~~~~~~~~~~i~~~~~i~~-~~~~~~~---~~~~~-~~~~~~~~~~~~a~gi~~Faf-g~~v~p~I~~~M~~~ 237 (238)
-++..+...++.+...... +..++.. +...+ +.....+.++..++....|+| |.......-+|+|||
T Consensus 153 ~~~~ki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~~faf~G~e~v~~~a~E~knP 229 (461)
T PRK10746 153 FAMIKVTTIIVMIVIGLGVIFFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGEAKNP 229 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCh
Confidence 2111111111111111111 1110100 00000 011112345668899999999 577788888888887
No 29
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=98.50 E-value=3.2e-05 Score=71.62 Aligned_cols=112 Identities=12% Similarity=0.006 Sum_probs=70.6
Q ss_pred ccchhHHHHHHHHhhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCCcccC-cHHHHHHHHcCc
Q 026491 17 MLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHI-RYRDLAGHIYGR 95 (238)
Q Consensus 17 ~~~s~~~a~~~l~~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~~~~~~~~~~-sY~~l~~~~~G~ 95 (238)
||-+.++.....+.+++|+|++.+|..+.+..|....++..++.++..........+...+..+ .. ..-+-+++.|||
T Consensus 1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~~~ag~~~~l~~w~i~~~~~~~~al~~aeL~s~~P~-~gGG~y~y~~~~fG~ 79 (468)
T TIGR03810 1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVGMLALAFSFQNLANKKPE-LDGGVYSYAKAGFGP 79 (468)
T ss_pred CCCCHHHHHHHHHHhHHhhHHHHhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-CCCChhhhHHhHcCc
Confidence 4668899999999999999999999974556664333444566666665555555554221111 11 233447888999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026491 96 RAYALTWGLQYVNLFMINTGYIILAGQALKAAFV 129 (238)
Q Consensus 96 ~~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~ 129 (238)
....++.....+...-...++.....+.+..+++
T Consensus 80 ~~gf~~gw~~w~~~~~~~~~~~~~~~~~~~~~~p 113 (468)
T TIGR03810 80 FMGFISAWGYWLSAWLGNVAYATLLFSTLGYFFP 113 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9888777776655443444555555555544443
No 30
>PRK10249 phenylalanine transporter; Provisional
Probab=98.48 E-value=2e-05 Score=72.79 Aligned_cols=210 Identities=14% Similarity=0.019 Sum_probs=115.0
Q ss_pred cccchhHHHHHHHHhhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCCcccCcHHHHHHHHcCc
Q 026491 16 EMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYGR 95 (238)
Q Consensus 16 ~~~~s~~~a~~~l~~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~~~~~~~~~~sY~~l~~~~~G~ 95 (238)
+|+-+.++...-.+..++|+|++..|..+.++.|- ..++..++.+++.+.....+.+......+ .-+..+.+++.+||
T Consensus 20 ~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~aGp-~~~l~~li~~~~~~~~~~~~aEl~~~~P~-~Gg~~~y~~~~~g~ 97 (458)
T PRK10249 20 HRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGP-AVLLGYGVAGIIAFLIMRQLGEMVVEEPV-SGSFAHFAYKYWGP 97 (458)
T ss_pred hccCcHhHhhhhhhhcccchhHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCHHHHHHHHhCh
Confidence 45568899999999999999999999875777786 46667777777777777777766321111 12566678899999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhcCCChhhHHHHHHHHHH--
Q 026491 96 RAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTV-- 173 (238)
Q Consensus 96 ~~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~~lpl~~l~~l~~l~~~S~~~~~-- 173 (238)
...+++.....+.......+.....+..++.++ ++ .....+.+++..+. ..+ -.+..|..+.+..+..+
T Consensus 98 ~~gf~~gw~~~~~~~~~~~~~~~a~~~~~~~~~-----~~--~~~~~~~~~~~~l~-~~l-N~~gv~~~~~i~~~~~~ik 168 (458)
T PRK10249 98 FAGFLSGWNYWVMFVLVGMAELTAAGIYMQYWF-----PD--VPTWIWAAAFFIII-NAV-NLVNVRLYGETEFWFALIK 168 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----Cc--CcHHHHHHHHHHHH-HHH-HHhcchhhhhHHHHHHHHH
Confidence 988888777666554444444444444444332 11 12122222222221 122 23344444443332221
Q ss_pred -HHHHHHHHHHHH-HhhcCCCCCCCcCC--CCC--CcchhhhhhHhHHHHHHHHh-ccCchhhhhhcccCC
Q 026491 174 -LSTIYIVIAIWL-SVRDGLKNPARDYS--IPG--TTATKIFESIGACANLVFAF-NTGMLPEIQVREEFR 237 (238)
Q Consensus 174 -~~~~~~~i~~~~-~i~~~~~~~~~~~~--~~~--~~~~~~~~~~~a~gi~~Faf-g~~v~p~I~~~M~~~ 237 (238)
..+... +++.. .+..+.++++.+.+ .++ .....+.++..++....|+| |.......-+|+|||
T Consensus 169 v~~i~~~-i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~a~E~~~P 238 (458)
T PRK10249 169 VLAIIGM-IGFGLWLLFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVIMFSFGGLELIGITAAEARDP 238 (458)
T ss_pred HHHHHHH-HHHHHHHHHcCCCCCCCChhhccCCCCCCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCH
Confidence 111111 11111 11122111111100 000 00112335678889999999 577888888999887
No 31
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=98.41 E-value=4.9e-05 Score=69.78 Aligned_cols=211 Identities=12% Similarity=-0.009 Sum_probs=111.0
Q ss_pred ccccccchhHHHHHHHHhhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhc---cccCCcccCcHHHHH
Q 026491 13 FHLEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKL---HEFGGKRHIRYRDLA 89 (238)
Q Consensus 13 ~~~~~~~s~~~a~~~l~~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~---~~~~~~~~~sY~~l~ 89 (238)
.+.+|+-+.++...-.+..++|....+.+.+ .++.|+..-++..++.+++.........+. .++.| ..-.-+
T Consensus 3 ~~l~r~l~~~~~~~l~~~~~igg~~~~~~~~-~~~~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~~P~~G----g~y~~~ 77 (442)
T TIGR00908 3 RQLKKTLATWQLWGIGVGYVISGDYAGWNFG-LAQGGWGGFVVATLLVATMYLTFCFSLAELSTMIPTAG----GGYGFA 77 (442)
T ss_pred chhhccCCHHHHHHhHHHHHhhccchhHhhH-HHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC----CHHHHH
Confidence 4456777888888777777887444555777 888898533344444444444444444443 33333 344466
Q ss_pred HHHcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhcCCChhhHHHHHH
Q 026491 90 GHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLG 169 (238)
Q Consensus 90 ~~~~G~~~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~~lpl~~l~~l~~l~~~S~ 169 (238)
++.+||...+++.....+.......++....++.+..+++.. ....+.+++..+. ..+ -.+..|..+.+..
T Consensus 78 ~~~~G~~~gf~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p~~-------~~~~~~~~~~~~~-~~l-n~~g~~~~~~i~~ 148 (442)
T TIGR00908 78 RRAFGPWGGFLAGTAILIEFAFAPPAIACFIGAYCESLFPVG-------PGWLAALVFYIVF-IGI-NILGVGEAAKLEF 148 (442)
T ss_pred HHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-------chhHHHHHHHHHH-HHH-HHHHHHHHHhHHH
Confidence 788999988888877777666666677777787776655311 1111121111111 111 2233444444444
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCC-CcCCC---CCCcchhhhhhHhHHHHHHHHh-ccCchhhhhhcccCCC
Q 026491 170 VSTVLSTIYIVIAIWLSVRDGLKNPA-RDYSI---PGTTATKIFESIGACANLVFAF-NTGMLPEIQVREEFRS 238 (238)
Q Consensus 170 ~~~~~~~~~~~i~~~~~i~~~~~~~~-~~~~~---~~~~~~~~~~~~~a~gi~~Faf-g~~v~p~I~~~M~~~~ 238 (238)
+..+..+...++.+... ....+..+ ...+. .+.....+.+++.++....|+| |.......-+|+|||.
T Consensus 149 ~~~~~~~~~l~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~ 221 (442)
T TIGR00908 149 VVTAVAIIALGVFIGAM-VPHFDSANLFNGPQTGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEETKNPK 221 (442)
T ss_pred HHHHHHHHHHHHHHHHH-hccCCHHHhccCCccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 33222221111111111 11111000 00000 0111112345677888889999 5777788888999873
No 32
>KOG3832 consensus Predicted amino acid transporter [General function prediction only]
Probab=98.38 E-value=6e-06 Score=67.64 Aligned_cols=203 Identities=15% Similarity=0.137 Sum_probs=114.5
Q ss_pred HHHHhhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcc------------c--c--C-----------
Q 026491 26 FVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLH------------E--F--G----------- 78 (238)
Q Consensus 26 ~~l~~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~~------------~--~--~----------- 78 (238)
.-+.|-++|+|.|+||.| |+.+||...+.+++..+++++-+....++.. + + .
T Consensus 19 lymfnlivgtgalalpka-fatagwllsi~ll~fl~fmsfmaatfviealaaanaqlhwkrle~~keeeddd~stasd~d 97 (319)
T KOG3832|consen 19 LYMFNLIVGTGALALPKA-FATAGWLLSITLLTFLAFMSFMAATFVIEALAAANAQLHWKRLEKKKEEEDDDESTASDDD 97 (319)
T ss_pred hhhhhhhhccccccchHh-HhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhccccccccCCCc
Confidence 346788999999999999 9999999999999999999988877666541 0 0 0
Q ss_pred -----C-----ccc------------------CcHHHHHHHHcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026491 79 -----G-----KRH------------------IRYRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVL 130 (238)
Q Consensus 79 -----~-----~~~------------------~sY~~l~~~~~G~~~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~ 130 (238)
| ||. ..-.|++...|.|.+-.+.-++++++++|-...|--..-.+..++...
T Consensus 98 vli~d~yeraekrpilsvqrrgspnpfeisdkvemgemasmffnkvgln~fyf~iiiylfgdlaiyaaavpfs~m~itca 177 (319)
T KOG3832|consen 98 VLIADGYERAEKRPILSVQRRGSPNPFEISDKVEMGEMASMFFNKVGLNFFYFAIIIYLFGDLAIYAAAVPFSAMNITCA 177 (319)
T ss_pred EEEecCchhcccCCcceecccCCCCcceeehhhhHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhcCchHhhhhhhh
Confidence 0 000 013355555566777667777888888888777766555555555443
Q ss_pred HhcCC---------C-----CC--------CchhhHHHHHHHHHHHHhcCC--ChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 026491 131 FWKDD---------H-----TM--------KLPYFIAIAGFVCALFAIGIP--NLSALGVWLGVSTVLSTIYIVIAIWLS 186 (238)
Q Consensus 131 ~~~~~---------~-----~~--------~~~~~iii~~~~~~lpl~~l~--~l~~l~~~S~~~~~~~~~~~~i~~~~~ 186 (238)
..+.+ + .| -.|.|.+|+.+++.+|..+.. +-|++..+..+.-...+. .+.+
T Consensus 178 a~g~dscgvead~~~~dtdrcwg~ilrrmdayr~flaiftlll~lpftf~diqktk~iqiltslmrw~~~~-----~g~~ 252 (319)
T KOG3832|consen 178 AIGADSCGVEADPCHEDTDRCWGEILRRMDAYRFFLAIFTLLLCLPFTFADIQKTKHIQILTSLMRWAAFI-----LGIS 252 (319)
T ss_pred hcCCccccccCCcccccccccchHHHhhhHHHHHHHHHHHHHHcCceeEeccccchhHHHHHHHHHHHhcc-----chhh
Confidence 22211 0 01 125677777766556665432 333333333222221110 1111
Q ss_pred hhcCCCCCCCcCCCCCCcchhhhhhHhHHHHHHHHhc-cCchhhhhhcccC
Q 026491 187 VRDGLKNPARDYSIPGTTATKIFESIGACANLVFAFN-TGMLPEIQVREEF 236 (238)
Q Consensus 187 i~~~~~~~~~~~~~~~~~~~~~~~~~~a~gi~~Fafg-~~v~p~I~~~M~~ 236 (238)
..... -..+.....++...+-++=.-++..+++|. |-+.|..-..|+-
T Consensus 253 l~tmq--aeedaa~a~p~arc~cgfgkl~~~aly~~~a~cmapda~gagq~ 301 (319)
T KOG3832|consen 253 LATMQ--AEEDAAAAHPPARCFCGFGKLFGCALYAFMAHCMAPDAIGAGQT 301 (319)
T ss_pred hhhhh--hcccccccCCccccccccccccchhhHHHHhhccCCCCCCCCee
Confidence 11000 011111111122222233345788889996 8888877666653
No 33
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=98.37 E-value=7.6e-05 Score=70.78 Aligned_cols=218 Identities=11% Similarity=0.000 Sum_probs=116.6
Q ss_pred ccccchhHHHHHHHHhhhhhhhhhhhhHHhh-hhhhhHHHHHHHHHHHHHHHHHHHHHHhc---cccCCcccCcHHHHHH
Q 026491 15 LEMLDSWFQVGFVLTTGINSAYVLGYPGTVM-VPLGWIAGVVGLIIATIVSLNANALIAKL---HEFGGKRHIRYRDLAG 90 (238)
Q Consensus 15 ~~~~~s~~~a~~~l~~~~iG~GiLalP~a~~-~~~G~~~G~i~l~~~~~~~~yt~~lL~~~---~~~~~~~~~sY~~l~~ 90 (238)
.+|+-+.++...--+..++|+|+..+|..+. ...|.. .++..++.++.+........+. .++.|- ...|. +
T Consensus 26 L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~-~~ls~liagv~~l~~al~yaElas~~P~sGg-~Y~y~---~ 100 (557)
T TIGR00906 26 MKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPA-IVLSFLISGLAAVLSGFCYAEFGARVPKAGS-AYLYS---Y 100 (557)
T ss_pred hhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCc-ceeeH---H
Confidence 4667799999999999999999999997512 346753 4445555555555555554444 334332 23344 3
Q ss_pred HHcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcC----C-CCCCc-hhhHHHHHHHHHHHHhcCCC
Q 026491 91 HIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLF----WKD----D-HTMKL-PYFIAIAGFVCALFAIGIPN 160 (238)
Q Consensus 91 ~~~G~~~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~----~~~----~-~~~~~-~~~iii~~~~~~lpl~~l~~ 160 (238)
+.+||...+++.....+.....+.+.....++.+..++... ..+ + ..... ..++.+..+.+ +-+...+.
T Consensus 101 ~~~G~~~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~a~~ii~l-~~~ln~~G 179 (557)
T TIGR00906 101 VTVGELWAFITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLNYDGLAEYPDFFAVCLILL-LAVLLSFG 179 (557)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCcccccchHHHHHHHHH-HHHHHHhc
Confidence 45899988888887776654444444444455554444321 000 0 00101 11111111111 12223466
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-CCCCcCCCC--CCcchhhhhhHhHHHHHHHHh-ccCchhhhhhcccC
Q 026491 161 LSALGVWLGVSTVLSTIYIVIAIWLSVRDGLK-NPARDYSIP--GTTATKIFESIGACANLVFAF-NTGMLPEIQVREEF 236 (238)
Q Consensus 161 l~~l~~~S~~~~~~~~~~~~i~~~~~i~~~~~-~~~~~~~~~--~~~~~~~~~~~~a~gi~~Faf-g~~v~p~I~~~M~~ 236 (238)
.|..++++.+..+..+...++.++..+.+... +........ +..+..+.+++.+.....|+| |.......-+|+||
T Consensus 180 ik~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~~~~~~~f~p~g~~g~l~g~~~~~faf~Gfd~v~~~aeE~kn 259 (557)
T TIGR00906 180 VKESAWVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFMPYGFTGVLSGAATCFFAFIGFDAIATTGEEVKN 259 (557)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhhHHHhhCCchhccccccccCCCCCCcchHHHHHHHHHHHHHHhhHHHHHHhHHhccC
Confidence 77777777666544443333333333333221 100000000 111112346778889999999 57777888888888
Q ss_pred CC
Q 026491 237 RS 238 (238)
Q Consensus 237 ~~ 238 (238)
|.
T Consensus 260 P~ 261 (557)
T TIGR00906 260 PQ 261 (557)
T ss_pred cc
Confidence 73
No 34
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=98.36 E-value=6e-05 Score=69.90 Aligned_cols=214 Identities=11% Similarity=0.015 Sum_probs=119.3
Q ss_pred cccchhHHHHHHHHhhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCCcccCcHHHHHHHHcCc
Q 026491 16 EMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYGR 95 (238)
Q Consensus 16 ~~~~s~~~a~~~l~~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~~~~~~~~~~sY~~l~~~~~G~ 95 (238)
+|+-+.++...-.+..++|+|++..|..+.++.|...-++..++.+++.+.....+.+......+..-.|.+.+++.+||
T Consensus 1 ~r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~~gG~~~~~~~~~~g~ 80 (478)
T TIGR00913 1 KKSLKQRHIQMIALGGTIGTGLLVGSGTALATGGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPVVSGSFATYASRFVDP 80 (478)
T ss_pred CCCCcHHHHHHHHHhccccchhhhcchhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHcCc
Confidence 36678899999999999999999988765778885333555666666666666666665221111112588888999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhcCCChhhHHHHHHHHHH--
Q 026491 96 RAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTV-- 173 (238)
Q Consensus 96 ~~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~~lpl~~l~~l~~l~~~S~~~~~-- 173 (238)
...+++...+.+.....+.......+..+..+. + ......|..+..+++ ..+ -.+..|..+.++.+...
T Consensus 81 ~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~-----~--~~~~~~~~~~~~~~~-~~i-n~~gv~~~~~~~~~~~~~k 151 (478)
T TIGR00913 81 AFGFAVGWNYWLQWLIVLPLELVTASMTIQYWT-----D--KVNPAVWIAIFYVFI-VII-NLFGVKGYGEAEFWFSSIK 151 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----C--CCCHHHHHHHHHHHH-HHH-HHhcchHHHHHHHHHHHHH
Confidence 998888887777666555566666666554321 1 122233443322222 122 23445555554443321
Q ss_pred -HHHHHHHHHHHHHhhcCCCCCC-Cc---CC-CCCCcc----hhhhhhHhHHHHHHHHh-ccCchhhhhhcccCCC
Q 026491 174 -LSTIYIVIAIWLSVRDGLKNPA-RD---YS-IPGTTA----TKIFESIGACANLVFAF-NTGMLPEIQVREEFRS 238 (238)
Q Consensus 174 -~~~~~~~i~~~~~i~~~~~~~~-~~---~~-~~~~~~----~~~~~~~~a~gi~~Faf-g~~v~p~I~~~M~~~~ 238 (238)
..+...++.....+..+.+++. .. .. .++.+. ..+.++..++....|+| |......+-+|+|||.
T Consensus 152 i~~l~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~ 227 (478)
T TIGR00913 152 ILAIIGFIILSIILNCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAGEAANPR 227 (478)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHHHHHhhcChh
Confidence 1111111111111111111110 00 00 001111 12345677888899999 5777888889999873
No 35
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=98.34 E-value=7e-05 Score=69.95 Aligned_cols=218 Identities=12% Similarity=0.008 Sum_probs=108.7
Q ss_pred ccCCCccccccchhHHHHHHHHhhhhhhhhhhhhHHhhhhhhhHHHH--HHHHHHHHHHHHHHHHHHhc---cccCCccc
Q 026491 8 SSSYFFHLEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGV--VGLIIATIVSLNANALIAKL---HEFGGKRH 82 (238)
Q Consensus 8 ~~~~~~~~~~~~s~~~a~~~l~~~~iG~GiLalP~a~~~~~G~~~G~--i~l~~~~~~~~yt~~lL~~~---~~~~~~~~ 82 (238)
|..++.+.+|+-+.+++..-.+.+++|+|++..|..+.++.|-. |. +..++.+++.........+. .++.|
T Consensus 33 ~~~~~~~l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~~G~~-g~~~~~~ii~~i~~~~~al~~aELas~~P~sG--- 108 (501)
T TIGR00911 33 DGGEAVALKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSV-GLALIMWAVCGIFSIVGALVYAELGTTIPKSG--- 108 (501)
T ss_pred ccccccccCccccHhHhhHhheeceEEeeEeecHHHHHhhCCCh-HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC---
Confidence 33333445777899999998999999999999998645666742 32 33445555555555555554 33333
Q ss_pred CcHHHHHHHHcCccchhHHHHHHHH-HHHHHHHHHHHHHHHHH-HHHHHHHhcCCCCCCch-hhHHHHHHHHHHHHhcCC
Q 026491 83 IRYRDLAGHIYGRRAYALTWGLQYV-NLFMINTGYIILAGQAL-KAAFVLFWKDDHTMKLP-YFIAIAGFVCALFAIGIP 159 (238)
Q Consensus 83 ~sY~~l~~~~~G~~~~~~v~~~~~i-~~~g~~v~yli~~~~~l-~~~~~~~~~~~~~~~~~-~~iii~~~~~~lpl~~l~ 159 (238)
..-.-.++.+||...++....... ...+.+..+.+..++.+ +.+++ +...... ...+...+..++-..-.+
T Consensus 109 -G~y~~~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~-----~~~~~~~~~~~i~~~~i~~~~~ln~~ 182 (501)
T TIGR00911 109 -GEYNYILEVFGPLLAFLRLWIELLVIRPGSQAVNALNFAIYILTPVFP-----DCEVPEWAIRLVAVLCVLLLTLVNCL 182 (501)
T ss_pred -chhhhHHhHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCCCchHHHHHHHHHHHHHHHHHHHh
Confidence 223334557999877666554332 22233344444444443 22221 1111111 111111111111111234
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHhh---cCCCCCCCcC--CCCCCcchhhhhhHhHHHHHHHHh-ccCchhhhhhc
Q 026491 160 NLSALGVWLGVSTVLSTIYIVIAIWLSVR---DGLKNPARDY--SIPGTTATKIFESIGACANLVFAF-NTGMLPEIQVR 233 (238)
Q Consensus 160 ~l~~l~~~S~~~~~~~~~~~~i~~~~~i~---~~~~~~~~~~--~~~~~~~~~~~~~~~a~gi~~Faf-g~~v~p~I~~~ 233 (238)
..|..+.+..+.....+...++.++..+. .+.. ++.+. ..++. ..+..++..++....|+| |-.....+.+|
T Consensus 183 Gvk~~~~~~~i~~~~~l~~l~~~ii~~~~~~~~~~~-~~~~~~~~f~~~-~~~~~~~~~a~~~~~~af~G~e~~~~~a~E 260 (501)
T TIGR00911 183 SVKWATRVQDIFTACKLLALLLIIITGWVQLGKGGV-ESLNPKNAFEGT-ETSAGGIVLAFYSGIWAYGGWNYLNFVTEE 260 (501)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-cccCcccccCCC-CCcHHHHHHHHHHHHHHHHhHHHHhhhHHH
Confidence 55666555555543333222222222222 1111 00110 11111 112345667888999999 57777888899
Q ss_pred ccCC
Q 026491 234 EEFR 237 (238)
Q Consensus 234 M~~~ 237 (238)
+|||
T Consensus 261 ~knP 264 (501)
T TIGR00911 261 VKNP 264 (501)
T ss_pred hcCc
Confidence 9987
No 36
>PRK15049 L-asparagine permease; Provisional
Probab=98.33 E-value=0.00012 Score=68.52 Aligned_cols=92 Identities=14% Similarity=0.037 Sum_probs=66.8
Q ss_pred cccchhHHHHHHHHhhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccc-cCCcccCcHHHHHHHHcC
Q 026491 16 EMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHE-FGGKRHIRYRDLAGHIYG 94 (238)
Q Consensus 16 ~~~~s~~~a~~~l~~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~~~-~~~~~~~sY~~l~~~~~G 94 (238)
+|+-+.++...-.+..++|+|++..|..+.++.|- .+++..++.+++.+..+..+.+... .+. .-...+-+++.+|
T Consensus 27 ~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~aGp-~~il~~li~~i~~~~v~~slaELas~~P~--aGg~y~y~~~~~G 103 (499)
T PRK15049 27 HKAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAGP-ALALVYLICGLFSFFILRALGELVLHRPS--SGSFVSYAREFLG 103 (499)
T ss_pred hccCCHhHhHHHhhhccccchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHhCCC--CCCHHHHHHHHhC
Confidence 44558899999999999999999999865888886 4677777777777777777766622 111 1245666778899
Q ss_pred ccchhHHHHHHHHHHH
Q 026491 95 RRAYALTWGLQYVNLF 110 (238)
Q Consensus 95 ~~~~~~v~~~~~i~~~ 110 (238)
|+..+++.....+...
T Consensus 104 ~~~gf~~GW~~~l~~~ 119 (499)
T PRK15049 104 EKAAYVAGWMYFINWA 119 (499)
T ss_pred cHhHHHHHHHHHHHHH
Confidence 9988777776665443
No 37
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=98.31 E-value=8.7e-05 Score=68.23 Aligned_cols=214 Identities=10% Similarity=0.030 Sum_probs=105.1
Q ss_pred ccccccchhHHHHHHHHhhhhhhhhhhhhHHhhhhhhhH-HHHHHHHHHHHHHHHHHHHHHh---ccccCCcccCcHHHH
Q 026491 13 FHLEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWI-AGVVGLIIATIVSLNANALIAK---LHEFGGKRHIRYRDL 88 (238)
Q Consensus 13 ~~~~~~~s~~~a~~~l~~~~iG~GiLalP~a~~~~~G~~-~G~i~l~~~~~~~~yt~~lL~~---~~~~~~~~~~sY~~l 88 (238)
.+.+|+-+.+++..-.+..++|+|++..|..+.++.|-. ..++..++.+++.........+ ..++.|- ...|
T Consensus 4 ~~L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~P~~GG-~y~y--- 79 (445)
T PRK11357 4 QELQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPENGA-DYVY--- 79 (445)
T ss_pred ccccccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC-ceee---
Confidence 446778899999999999999999999998634455532 1233344444444444444444 3444442 2344
Q ss_pred HHHHcCccchhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhcCCChhhHHHH
Q 026491 89 AGHIYGRRAYALTWGLQY-VNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVW 167 (238)
Q Consensus 89 ~~~~~G~~~~~~v~~~~~-i~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~~lpl~~l~~l~~l~~~ 167 (238)
.++.+||....+...... .........+.+..++.+...+ +....... .+.......+-..-.+..|..+.+
T Consensus 80 ~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~-----~~~~~~~~--~~~~~~~~~~~~ln~~gv~~~~~v 152 (445)
T PRK11357 80 LKNAGSRPLAFLSGWASFWANDAPSLSIMALAIVSNLGFLT-----PIDPLLGK--FIAAGLIIAFMLLHLRSVEGGAAF 152 (445)
T ss_pred HHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCchHHHH--HHHHHHHHHHHHHHHhhhhHHHHH
Confidence 346799987776666533 2223333445555555543321 11111111 111111110111123444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHh--hcCCCCCCCcCCCCCCcchhhhhhHhHHHHHHHHh-ccCchhhhhhcccCCC
Q 026491 168 LGVSTVLSTIYIVIAIWLSV--RDGLKNPARDYSIPGTTATKIFESIGACANLVFAF-NTGMLPEIQVREEFRS 238 (238)
Q Consensus 168 S~~~~~~~~~~~~i~~~~~i--~~~~~~~~~~~~~~~~~~~~~~~~~~a~gi~~Faf-g~~v~p~I~~~M~~~~ 238 (238)
..+..+..+...++.++..+ .++.+.. .+..........+.++..++....|+| |-.....+.+|+|||.
T Consensus 153 ~~~~~~~~~~~l~~~ii~g~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~ 225 (445)
T PRK11357 153 QTLITIAKIIPFTIVIGLGIFWFKAENFA-APTTTAIGATGSFMALLAGISATSWSYTGMASICYMTGEIKNPG 225 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcccc-CCCcccccccchHHHHHHHHHHHHHHHhhHHHHHhhHHHhcCcc
Confidence 44433222222211222222 1221100 000000001111345667888899999 5788888899999873
No 38
>PRK10836 lysine transporter; Provisional
Probab=98.30 E-value=7.3e-05 Score=69.68 Aligned_cols=95 Identities=7% Similarity=-0.037 Sum_probs=69.4
Q ss_pred CCCccccccchhHHHHHHHHhhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhc---cccCCcccCcHH
Q 026491 10 SYFFHLEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKL---HEFGGKRHIRYR 86 (238)
Q Consensus 10 ~~~~~~~~~~s~~~a~~~l~~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~---~~~~~~~~~sY~ 86 (238)
.++++.+|+-+.++...-.+.+++|+|++..|..+.++.|-...++..++.+++.+.....+.+. .++.| ...
T Consensus 8 ~~~~~l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~aGp~~~l~a~~i~g~~~~~~al~~aEL~s~~P~sG----g~y 83 (489)
T PRK10836 8 TEAPGLRRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELAAYMPVSG----SFA 83 (489)
T ss_pred CCcccccccCcHHHHHHHHHhhhhhhhhhHhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC----CHH
Confidence 34555677889999999999999999999999865888886445777777778777777777766 23333 345
Q ss_pred HHHHHHcCccchhHHHHHHHHH
Q 026491 87 DLAGHIYGRRAYALTWGLQYVN 108 (238)
Q Consensus 87 ~l~~~~~G~~~~~~v~~~~~i~ 108 (238)
.-+++.+||....++.......
T Consensus 84 ~y~~~~~g~~~gf~~Gw~~~~~ 105 (489)
T PRK10836 84 TYGQNYVEEGFGFALGWNYWYN 105 (489)
T ss_pred HHHHHHcChHHHHHHHHHHHHH
Confidence 5556678888777776655543
No 39
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=98.27 E-value=0.00018 Score=65.48 Aligned_cols=212 Identities=13% Similarity=0.088 Sum_probs=133.7
Q ss_pred CccccccchhHHHHHHHHhhhhhhhhh-hhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccc-cCCcccCcHHHHH
Q 026491 12 FFHLEMLDSWFQVGFVLTTGINSAYVL-GYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHE-FGGKRHIRYRDLA 89 (238)
Q Consensus 12 ~~~~~~~~s~~~a~~~l~~~~iG~GiL-alP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~~~-~~~~~~~sY~~l~ 89 (238)
+++-+|.-+.++--.-=+...||+|.. +--.+ .+.+|- .=++.-.+++++.+.=++.|.+... ++. ..|+.+.+
T Consensus 8 ~~~l~rgL~~RHIqlIAiGGaIGtGLFlGSg~~-I~~AGP-SvlLaY~I~G~~~f~iMRaLGEm~~~~p~--~gSF~~~a 83 (462)
T COG1113 8 EQGLKRGLKNRHIQLIAIGGAIGTGLFLGSGSA-IAMAGP-SVLLAYLIAGIFVFLIMRALGEMLVANPV--SGSFSDYA 83 (462)
T ss_pred chhhhhhhHHHHHHHHHHhhhhhhhhhcccchh-hhhhCc-HHHHHHHHHHHHHHHHHHHHHHHHHhCCC--CCcHHHHH
Confidence 334556678999888888999999973 44556 778884 2444566777788888888888732 222 35899999
Q ss_pred HHHcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHH---HHHhcCCChhhHHH
Q 026491 90 GHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCA---LFAIGIPNLSALGV 166 (238)
Q Consensus 90 ~~~~G~~~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~~---lpl~~l~~l~~l~~ 166 (238)
++.+||++..+++...-..-.-++.+-+.-.|..++.++++. ..|+....++.+ +=+.-.|.+.++-+
T Consensus 84 ~~~lG~~Agf~tgW~YW~~wv~v~~ae~tAi~~y~~~WfP~v---------P~Wv~al~~~~l~~~~NL~sVk~FGE~Ef 154 (462)
T COG1113 84 RKYLGPWAGFLTGWTYWFFWVLVGIAELTAIGIYLQFWFPDV---------PQWVFALAAVVLLLAVNLISVKVFGELEF 154 (462)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---------cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999888888999999999999888877422 244443333221 22333456666644
Q ss_pred -HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcCCCCC------CcchhhhhhHhHHHHHHHHhc-cCchhhhhhcccCC
Q 026491 167 -WLGVSTVLSTIYIVIAIWLSVRDGLKNPARDYSIPG------TTATKIFESIGACANLVFAFN-TGMLPEIQVREEFR 237 (238)
Q Consensus 167 -~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~------~~~~~~~~~~~a~gi~~Fafg-~~v~p~I~~~M~~~ 237 (238)
++++=++..+..+++.. ..+..+.+++....++.+ .-+..+.+++.++-+.+|||+ ...+---.+|-|||
T Consensus 155 WfAlIKV~aIi~~Iv~G~-~ll~~g~~~~~~~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA~Et~dP 232 (462)
T COG1113 155 WFALIKVAAIIAFIVVGI-VLLFGGFGGGGGAAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELVGITAAEAKDP 232 (462)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHhhccCCCCCCccccccccCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHhhcCh
Confidence 44444433333222222 223333332221112211 112345678889999999995 65555455555555
No 40
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=98.24 E-value=5.1e-05 Score=69.02 Aligned_cols=207 Identities=14% Similarity=0.098 Sum_probs=115.9
Q ss_pred hhHHHHHHHHhhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHHH-HHHHHHHHhc---cccCCcccCcHHHHHHHHcCc
Q 026491 20 SWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVS-LNANALIAKL---HEFGGKRHIRYRDLAGHIYGR 95 (238)
Q Consensus 20 s~~~a~~~l~~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~~-~yt~~lL~~~---~~~~~~~~~sY~~l~~~~~G~ 95 (238)
+++++..-..+.++|+|+...| . .++.|.. .++..++.+.+. .-......+. .++.| ...+-.++++||
T Consensus 2 ~~~~~~~l~~~~~~g~gi~~~~-~-~~~~G~~-~~~~~~i~~~~~~l~~a~~~~el~~~~p~~G----G~y~~~~~~~g~ 74 (426)
T PF13520_consen 2 GLFSAIALVIGSIIGSGIFFSP-A-AASAGPS-AILAWIIAALLFFLPIALSYAELSSAYPSAG----GIYVWVSRAFGP 74 (426)
T ss_dssp -HHHHHHHHHHCHHTTTTTTHH-H-HTCTGCH-HHHHHHHHHHHHHHHHHHHHHHHHTTTTSST----THHHHHHHHH-H
T ss_pred CHHHHHHHHHHHHHHHHHHHHH-H-HHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHhccCCCcC----eeeehhhhcccc
Confidence 6788899999999999999999 6 7788864 444444443433 3333333333 33332 455677888999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCCCchhhHHHHHHHHHHHHhcCCChhhHHHHHHHHHHH
Q 026491 96 RAYALTWGLQYVNLFMINTGYIILAGQALKAAFVL-FWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVL 174 (238)
Q Consensus 96 ~~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~-~~~~~~~~~~~~~iii~~~~~~lpl~~l~~l~~l~~~S~~~~~~ 174 (238)
+...+......+........+....++.+...+.. +. ......+.+...++...-..-.+..|..+++..+..+.
T Consensus 75 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~ 150 (426)
T PF13520_consen 75 FWGFIVGWLYWVAYILSLASVASSFASYLLSLFGPDLN----PSPWPQFLIAIILILLFTLLNLLGIKLSGKIQNILTVI 150 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTGGGT----CSHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred cchhcccceeEEEeeccccccccchhhhhhhccccccc----cccchheeeeecccccceEeeechhhhhhhhhhhhhhh
Confidence 99888888888777777777777777777654421 11 11111111111111112223345677777776666544
Q ss_pred HH-HHHHHHHHHHhhcCCCCCCC--cCCCCCCcchhhhhhHhHHHHHHHHh-ccCchhhhhhcccCC
Q 026491 175 ST-IYIVIAIWLSVRDGLKNPAR--DYSIPGTTATKIFESIGACANLVFAF-NTGMLPEIQVREEFR 237 (238)
Q Consensus 175 ~~-~~~~i~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~a~gi~~Faf-g~~v~p~I~~~M~~~ 237 (238)
.+ ...++.+...+.....+... +...+..........+.++....|+| |....+...+|+|||
T Consensus 151 ~i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~k 217 (426)
T PF13520_consen 151 KIVIPLLVLIILGIVSFSFSGFNSLSFSLSTFFPSGWPGFLAGFSVAFFAFSGFEAIASLAEENKNK 217 (426)
T ss_dssp HHHHHHHHHHHHHHHSTTCCHHH----SHSCSSCSSSSHHHHHHHHHGGGGTTTTHHHHGGGGSSSH
T ss_pred hhhhhhhhheeEEEeeecccccccccccccccCCccccchhhHHHHHHhhcccccccccccccccch
Confidence 44 22222233334433221100 00000000011223578889999999 488889999999886
No 41
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=98.19 E-value=0.00039 Score=61.23 Aligned_cols=141 Identities=15% Similarity=0.154 Sum_probs=88.1
Q ss_pred cchhHHHHHHHHhhhhhhhhhhhhHHhhhhh---hhHHHHHHHHHHHHHHHHHHHHHHhccccCCcccCcHHHHHHHHcC
Q 026491 18 LDSWFQVGFVLTTGINSAYVLGYPGTVMVPL---GWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYG 94 (238)
Q Consensus 18 ~~s~~~a~~~l~~~~iG~GiLalP~a~~~~~---G~~~G~i~l~~~~~~~~yt~~lL~~~~~~~~~~~~sY~~l~~~~~G 94 (238)
|-|..|...-+..+.+|+|++.+|.. .++. ||.. . ++.+.......++..+..++.+ .++..|..++.+|
T Consensus 1 kIS~~Q~~~l~~~~~~g~~~l~~p~~-l~~~~~d~Wi~-~---ll~~~~~l~~~~l~~~l~~~~p--~~~l~~~~~~~~G 73 (320)
T PF03845_consen 1 KISPRQLFFLLISSIIGTGILFLPAI-LAEQAGDAWIS-V---LLGGLIGLLLALLIYYLLKRFP--GKTLVEISEKLFG 73 (320)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCcHHH-H---HHHHHHHHHHHHHHHHHHHHCC--CCCHHHHHHHHhC
Confidence 34778999999999999999999998 5444 5753 3 3333333333333333322211 3479999999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhcCCChhhHHHHHHHHHH
Q 026491 95 RRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTV 173 (238)
Q Consensus 95 ~~~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~~lpl~~l~~l~~l~~~S~~~~~ 173 (238)
|+..+++.....+..+......+-..+|.++..+- ++ +..|.+.....+..--.-.+.++.++..+-+-..
T Consensus 74 k~lg~ii~~~~~l~~l~~~~~~lr~~~~~i~~~~l----p~----TP~~~i~~~~ll~~~y~a~~G~e~i~R~~~~~~~ 144 (320)
T PF03845_consen 74 KWLGKIINLLYILYFLLISALVLREFSEFIKTYLL----PE----TPIWVIILLFLLVAAYAARKGIEVIARVAEILFP 144 (320)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----Cc----CCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 99888888877777777777777777777665432 11 1233333322221233335678888775555443
No 42
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=98.18 E-value=0.00096 Score=61.48 Aligned_cols=206 Identities=14% Similarity=0.070 Sum_probs=108.4
Q ss_pred hHHHHHHHHhhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCCcccCcHHHHHHHHcCccchhH
Q 026491 21 WFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYGRRAYAL 100 (238)
Q Consensus 21 ~~~a~~~l~~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~~~~~~~~~~sY~~l~~~~~G~~~~~~ 100 (238)
|+.+.+|+.+-..|+...++ -+++...++.+++...+..--.-+....-++.| .++..+.|..||.++..+
T Consensus 23 W~~~~~~v~~~~~Ga~l~~~------GLs~~~ailai~lG~~i~~~~~~l~~~~G~r~G---l~~~v~sR~~FG~~Gs~~ 93 (442)
T TIGR00800 23 WLGAAFNIATWAIGALGLPL------GLSWWQSVIAIILGNLLGGIFVALNSRAGAKYG---LPFPVLSRASFGIYGSLL 93 (442)
T ss_pred HHHHhhhHHHHHHHHHHHhc------CCcHHHHHHHHHHHHHHHHHHHHHhhhhHHHhC---CCcchhhhhhhhhhHhHH
Confidence 45555666666666533221 133334444444444443333333333323343 468899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC------chhhHHHHHHHHHHHHhcCCChhhHHHHHHHHHHH
Q 026491 101 TWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMK------LPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVL 174 (238)
Q Consensus 101 v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~------~~~~iii~~~~~~lpl~~l~~l~~l~~~S~~~~~~ 174 (238)
..+...+..+|-........|+.+..+.+...++..... .....+++..+. +++....-.|-+......+...
T Consensus 94 ~~~~~~i~~igW~av~~~~~g~al~~~l~~i~~~~~~~~~~~t~~~~~~~~i~~~l~-~~~~~~~g~~~~~~~~~~a~~~ 172 (442)
T TIGR00800 94 PSLLRIVMAIGWYGVQAWVGGLCVALMLDSIFPGYLHLGNGMTTLELICFIIFWALV-LVFLFFFGYKIRHLFEWLAVVP 172 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccccccCCcccHHHHHHHHHHHHHH-HHHHHcCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999888877543211111 122233333333 4544555555555555555432
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCcCCCC-CCcchhhhhhHhHHHHHHHHh-c-cCchhhhhhcccCC
Q 026491 175 STIYIVIAIWLSVRDGLKNPARDYSIP-GTTATKIFESIGACANLVFAF-N-TGMLPEIQVREEFR 237 (238)
Q Consensus 175 ~~~~~~i~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~a~gi~~Faf-g-~~v~p~I~~~M~~~ 237 (238)
.+....+.+......+.. .+...... ..+....+.+..++.+.+=.+ + ....|...+-+|+|
T Consensus 173 ~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~~s~~~~~~DysRy~~~~ 237 (442)
T TIGR00800 173 PFAAFGMLIWALSKAHGK-GPLGELTGTLHGSTGAWAFLYALSLVIGSFATWATNAPDFTRFGKSK 237 (442)
T ss_pred HHHHHHHHHHHHHHcCCC-CccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHcCchhhhhhcCCc
Confidence 211111111111121111 11100000 011223455555555533333 3 47888888888875
No 43
>TIGR00930 2a30 K-Cl cotransporter.
Probab=98.14 E-value=0.00014 Score=72.81 Aligned_cols=113 Identities=8% Similarity=-0.063 Sum_probs=83.6
Q ss_pred ccchhHHHHHHH-HhhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcccc-CCcccCcHHHHHHHHcC
Q 026491 17 MLDSWFQVGFVL-TTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEF-GGKRHIRYRDLAGHIYG 94 (238)
Q Consensus 17 ~~~s~~~a~~~l-~~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~~~~-~~~~~~sY~~l~~~~~G 94 (238)
+|-++++.++-. +..++|.|+.--|.-+..++|...+++.+++.++++..|..-+...... ..+.--.|.-+ .+++|
T Consensus 76 ~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~~~sll~~~la~~vtlltaLS~seiaTng~p~aGG~Y~yi-sralG 154 (953)
T TIGR00930 76 VKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGIGLSLLIILLCCCVTTITGLSMSAIATNGVVKGGGAYYLI-SRSLG 154 (953)
T ss_pred cccceeEeeeHhhhHhHheeeeeeeHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHH-HHHhC
Confidence 355788888877 8999999998777765889998778888888888888888887766321 00101135444 56699
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026491 95 RRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVL 130 (238)
Q Consensus 95 ~~~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~ 130 (238)
|.....+.+...+.+...+..|.+-.++.+..+++.
T Consensus 155 p~~Gf~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~ 190 (953)
T TIGR00930 155 PEFGGSIGLIFAFANAVAVAMYVVGFAETVLDLLRE 190 (953)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 988777777777777777888999899988877753
No 44
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=98.13 E-value=0.00052 Score=62.86 Aligned_cols=219 Identities=16% Similarity=0.066 Sum_probs=115.6
Q ss_pred CCccccccchhHH-HHHHHHhhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHHHH---HHHHHHHhccccCCcccCcHH
Q 026491 11 YFFHLEMLDSWFQ-VGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSL---NANALIAKLHEFGGKRHIRYR 86 (238)
Q Consensus 11 ~~~~~~~~~s~~~-a~~~l~~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~~~---yt~~lL~~~~~~~~~~~~sY~ 86 (238)
.+...+++-+.++ ...-.....+|.|++.+|.. ....+ ....+..++.+++.. ++..-+.+..++.| .+-
T Consensus 6 ~~~~~~~~l~~~~~~~~~~~~~~~~~gif~~~~~-~~~~~-~~~~~~~li~~~~~~~~a~~~~el~~~~p~~G----G~y 79 (466)
T COG0531 6 MSSELKKKLGLFDLLTALGVGSMIGSGIFALPGS-AAGLA-PAAILAWLIAGIIILFLALSYAELSSAIPSAG----GAY 79 (466)
T ss_pred cchhcCCCcchHHHHHHHHHHhhHhhhhHhhhhh-HHHhc-hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC----Cee
Confidence 3444556666666 66667888999999999988 66654 112222233333333 34444444333333 455
Q ss_pred HHHHHHcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHH-HHHHhcCCChhhHH
Q 026491 87 DLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVC-ALFAIGIPNLSALG 165 (238)
Q Consensus 87 ~l~~~~~G~~~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~-~lpl~~l~~l~~l~ 165 (238)
+-.++.+||+..+++.....+.......+..+..++.+..+++... ........+..+..+.. .+-+.-.+..|..+
T Consensus 80 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ln~~G~~~~~ 157 (466)
T COG0531 80 AYAKRALGPRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPG--LLSIGPLLIILIALALIALLTLLNLRGIKASA 157 (466)
T ss_pred eehhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch--hhcCCchHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 6677889998888888888887777777777777776655544210 00001011122111111 11222344555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcCCCCCCcchhhhhhHhHHHHHHHHh-ccCchhhhhhcccCC
Q 026491 166 VWLGVSTVLSTIYIVIAIWLSVRDGLKNPARDYSIPGTTATKIFESIGACANLVFAF-NTGMLPEIQVREEFR 237 (238)
Q Consensus 166 ~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~gi~~Faf-g~~v~p~I~~~M~~~ 237 (238)
....+..+..+...++.....+.....++................+..++....++| |-.....+.+|+|||
T Consensus 158 ~~~~~~~~~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~knp 230 (466)
T COG0531 158 KINSIITILKIIILLIFIILGLFAFGFSNGNLFAPFNPGGGSFGGILAAILLAFFAFTGFEAIATLAEEVKNP 230 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCcccccchHHHHHHHHHHHHHHhhcHHHHHHHHHHhcCc
Confidence 555555444433333333333333322110000000000111224677888899999 577777788899886
No 45
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=98.08 E-value=0.0023 Score=59.47 Aligned_cols=222 Identities=9% Similarity=-0.053 Sum_probs=106.3
Q ss_pred CccccccchhHHHHHHHHhh-hhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhc---cccCCcccCcHHH
Q 026491 12 FFHLEMLDSWFQVGFVLTTG-INSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKL---HEFGGKRHIRYRD 87 (238)
Q Consensus 12 ~~~~~~~~s~~~a~~~l~~~-~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~---~~~~~~~~~sY~~ 87 (238)
+++-+|+-+.++...--.+. .++.|+.++|..+..+.|- .-+...++.++........+.+. ++..| ..-.
T Consensus 8 ~~~L~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~Gp-~~~~~~li~~i~~l~~als~aEL~s~~P~aG----G~Y~ 82 (475)
T TIGR03428 8 QPQLHRKLGRYASFAAGFSFVSILTTIFQLFGFGYGFGGP-AFFWTWPVVFVGQLLVALNFAELAARYPISG----AIYQ 82 (475)
T ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC----CHHH
Confidence 44456777888776655554 4889999988764666665 33444445555555444444444 33333 2233
Q ss_pred HHHHHcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCCC---C--chhhHHHHHHHHHHHHhcCCC
Q 026491 88 LAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFW--KDDHTM---K--LPYFIAIAGFVCALFAIGIPN 160 (238)
Q Consensus 88 l~~~~~G~~~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~--~~~~~~---~--~~~~iii~~~~~~lpl~~l~~ 160 (238)
-+++.+||...+++.....+................+..+.+... .++... . ...+.+...+..+.-+.-.+.
T Consensus 83 ~~~~~~g~~~gf~~gW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g 162 (475)
T TIGR03428 83 WSRRMGGEVIGWFAGWFMIIAQIVTAAAAAIALQVVLPNIWSGFQIIGEDPTLTSPSGAANAVLLGSVLLVLTTVINCIG 162 (475)
T ss_pred HHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCccccCCCchHHHHHHHHHHHHHHHHHHHhh
Confidence 456678999888887777665543333333333333333321110 001011 0 112222211111111112234
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCc--CCCCCCcchhhhhhHhHHHHHHHHh-ccCchhhhhhcccCC
Q 026491 161 LSALGVWLGVSTVLSTIYIVIAIWLSVRDGLKNPARD--YSIPGTTATKIFESIGACANLVFAF-NTGMLPEIQVREEFR 237 (238)
Q Consensus 161 l~~l~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~a~gi~~Faf-g~~v~p~I~~~M~~~ 237 (238)
.|..+.+..+..+..+...+++++..+.....+++.. ....+........+..+.....|+| |-.....+-+|+|||
T Consensus 163 ~k~~~~i~~~~~~~~i~~l~~iii~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~aeE~knP 242 (475)
T TIGR03428 163 VEWMSRVNTIGVTCEIVGVLAVIGVLFTHAQRGPGVVFDTSVTGASPGYYGAFLVSGLMAAYVMVGFGSAGELSEETKNP 242 (475)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeecCCCCCCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhcCc
Confidence 4555555555443332222222222222221111110 0111111111223444566678999 578888899999998
Q ss_pred C
Q 026491 238 S 238 (238)
Q Consensus 238 ~ 238 (238)
.
T Consensus 243 ~ 243 (475)
T TIGR03428 243 R 243 (475)
T ss_pred c
Confidence 4
No 46
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=98.04 E-value=0.00052 Score=63.26 Aligned_cols=199 Identities=12% Similarity=0.051 Sum_probs=104.4
Q ss_pred HhhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCCcccCcHHHHHHHHcCccchhHHHHHHHHH
Q 026491 29 TTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYGRRAYALTWGLQYVN 108 (238)
Q Consensus 29 ~~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~~~~~~~~~~sY~~l~~~~~G~~~~~~v~~~~~i~ 108 (238)
+.+++|+|++-.|..+.++.|. ..++..++.+++.........+......+ .-...+-+++.+||+...++.....+.
T Consensus 4 ig~~IGsGif~~~g~~~~~aG~-~~ll~~~i~gi~~~~~al~~aEL~s~~P~-~Gg~y~y~~~~~G~~~gf~~gw~~~~~ 81 (446)
T PRK10197 4 IAGVIGASLFVGSSVAIAEAGP-AVLLAYLFAGLLVVMIMRMLAEMAVATPD-TGSFSTYADKAIGRWAGYTIGWLYWWF 81 (446)
T ss_pred ecchhHhHHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCHHHHHHHHcChHHHHHHHHHHHHH
Confidence 4578999999999955889996 47777777788777777777666321111 124666777889999888887777765
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHH--HHHHHH
Q 026491 109 LFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVLSTIYIV--IAIWLS 186 (238)
Q Consensus 109 ~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~~lpl~~l~~l~~l~~~S~~~~~~~~~~~~--i~~~~~ 186 (238)
............+..++.. . + ......+.++...+. ..+ -....|..+.+..+..+.-+...+ ++....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~----~-~--~~~~~~~~~~~l~~~-~~l-N~~gv~~~~~i~~~~~~~ki~~li~~ii~~~~ 152 (446)
T PRK10197 82 WVLVIPLEANIAAMILHSW----V-P--GIPIWLFSLVITLAL-TGS-NLLSVKNYGEFEFWLALCKVIAILAFIFLGAV 152 (446)
T ss_pred HHHHHHHHHHHHHHHHHhc----c-c--cCcHHHHHHHHHHHH-HHH-HHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 5544443333333333322 1 1 112122222222211 122 123344444444333221111111 111111
Q ss_pred hhcCCC-CCCC-c--CCCC--CCcchhhhhhHhHHHHHHHHh-ccCchhhhhhcccCCC
Q 026491 187 VRDGLK-NPAR-D--YSIP--GTTATKIFESIGACANLVFAF-NTGMLPEIQVREEFRS 238 (238)
Q Consensus 187 i~~~~~-~~~~-~--~~~~--~~~~~~~~~~~~a~gi~~Faf-g~~v~p~I~~~M~~~~ 238 (238)
...+.. ..+. . ...+ +..+..+.++..++....|+| |-......-+|+|||.
T Consensus 153 ~~~g~~~~~~~~~~~~~~~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~ 211 (446)
T PRK10197 153 AISGFYPYAEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPE 211 (446)
T ss_pred HhcCCCCCCCCCcchhcCCCCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhcChh
Confidence 112211 0000 0 0000 000112346778999999999 5777888888888873
No 47
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=97.70 E-value=0.001 Score=61.33 Aligned_cols=216 Identities=13% Similarity=0.076 Sum_probs=116.1
Q ss_pred CCCccccccchhHHHHHHHHhhhhhhhhhhhhHHhhhhhhhH-HHHHHHHHHHHHHHHHHHHHHh---ccccCCcccCcH
Q 026491 10 SYFFHLEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWI-AGVVGLIIATIVSLNANALIAK---LHEFGGKRHIRY 85 (238)
Q Consensus 10 ~~~~~~~~~~s~~~a~~~l~~~~iG~GiLalP~a~~~~~G~~-~G~i~l~~~~~~~~yt~~lL~~---~~~~~~~~~~sY 85 (238)
+++...+||-+.+.+.+.++..++|.|+...|..+.++.|=+ ..++.-+++++++.-....=++ ..+++|- +|
T Consensus 5 ~~~~~~~kkigll~~v~livg~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi~s~~galcyaELGT~ipksGg---d~ 81 (479)
T KOG1287|consen 5 GEEVQLKKKIGLLSGVSLIVGNIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGIISIIGALCYAELGTSIPKSGG---DY 81 (479)
T ss_pred cccccccceeeeecceeEEEEeeEecccccCcHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCc---ch
Confidence 344556788899999999999999999999999977777633 2333444555555554444333 3445553 46
Q ss_pred HHHHHHHcCccc-hhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhcCCChhh
Q 026491 86 RDLAGHIYGRRA-YALTWGLQYVNLFMINTGYIILAGQA-LKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSA 163 (238)
Q Consensus 86 ~~l~~~~~G~~~-~~~v~~~~~i~~~g~~v~yli~~~~~-l~~~~~~~~~~~~~~~~~~~iii~~~~~~lpl~~l~~l~~ 163 (238)
.-+.+. |||.. -...++..++..-..+..+-+..++- ++..++. ....+..--++ +..+ +.+....|..+
T Consensus 82 ayi~~a-fg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp~-----c~~p~~~~~ll-a~~~-l~~lt~~n~~~ 153 (479)
T KOG1287|consen 82 AYISEA-FGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFPL-----CDVPRVASKLL-AAAL-LVLLTLINSFS 153 (479)
T ss_pred hhHHHH-hccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCCC-----CCCchHHHHHH-HHHH-HHHHHHHhhhh
Confidence 666544 77754 33334444443444456677777775 6666541 12222222222 2223 22334567777
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHHHhhcCCCCCCC--cCC-CCCCcchhhhhhHhHHHHHHHHh-ccCchhhhhhcccC
Q 026491 164 LGVWLGVSTVLSTI---YIVIAIWLSVRDGLKNPAR--DYS-IPGTTATKIFESIGACANLVFAF-NTGMLPEIQVREEF 236 (238)
Q Consensus 164 l~~~S~~~~~~~~~---~~~i~~~~~i~~~~~~~~~--~~~-~~~~~~~~~~~~~~a~gi~~Faf-g~~v~p~I~~~M~~ 236 (238)
+++.+.+-.+.++. .+.++++..+......... +.. .+++. .+.-++-.++=.-.||| |-+.+--+.+|+||
T Consensus 154 V~~a~~vq~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~f~g~~-~~~g~i~lafysglfa~~GWd~lN~vteEikn 232 (479)
T KOG1287|consen 154 VKWATRVQIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSEFEGSD-TDVGNIALAFYSGLFAFSGWDYLNYVTEEIKN 232 (479)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhchheeEecccccccccccccCc-CchHHHHHHHHHhhhcccCchhhccchHhhcC
Confidence 77766665543332 2222222233322111000 101 22211 12223456777788899 45566666666666
Q ss_pred C
Q 026491 237 R 237 (238)
Q Consensus 237 ~ 237 (238)
|
T Consensus 233 P 233 (479)
T KOG1287|consen 233 P 233 (479)
T ss_pred c
Confidence 6
No 48
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=97.44 E-value=0.032 Score=51.84 Aligned_cols=114 Identities=15% Similarity=-0.037 Sum_probs=64.8
Q ss_pred CCCccccccchhHHHHHHHHhhhhh--hhhhhh-hHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhc---cccCCcccC
Q 026491 10 SYFFHLEMLDSWFQVGFVLTTGINS--AYVLGY-PGTVMVPLGWIAGVVGLIIATIVSLNANALIAKL---HEFGGKRHI 83 (238)
Q Consensus 10 ~~~~~~~~~~s~~~a~~~l~~~~iG--~GiLal-P~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~---~~~~~~~~~ 83 (238)
+.+++-+|+-+.++...--. +.+| .|+... +.+ .++.|-..-++..++.+++.......+.+. .++.|
T Consensus 5 g~~~~l~r~l~~~~~~~~~~-~~~~~~~g~~~~~~~~-~~~~Gp~~~i~~~~i~gi~~l~~~~~~aEl~s~~P~~G---- 78 (482)
T TIGR00907 5 GYKPELKREFSLWSIFGFAF-SISNSWTGISTTYNYG-LSSGGAMSIVWGWIIAGAGSICIALSLAELSSAYPTSG---- 78 (482)
T ss_pred CCcceeecccchhHHHHHHH-HHHHHHHHHHHHHHHh-hhcCCccchhHHHHHHHHHHHHHHHHHHHHHhhCCCCc----
Confidence 34455667777776543333 3454 555433 345 667776444556666677776666666665 33323
Q ss_pred cHHHHHHHHcC----ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026491 84 RYRDLAGHIYG----RRAYALTWGLQYVNLFMINTGYIILAGQALKAAFV 129 (238)
Q Consensus 84 sY~~l~~~~~G----~~~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~ 129 (238)
....-+++.+| |...+++.....+.....+.+.....++.+...+.
T Consensus 79 g~y~~~~~~~g~~~g~~~~f~~gW~~~~~~~~~~a~~~~~~~~~~~~~~~ 128 (482)
T TIGR00907 79 GQYFWSAKLAPPRQMPFASWMTGWFNLAGQVAGTASTDLSVAQLILGIVS 128 (482)
T ss_pred cHHHHHHHhcccccccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22333344555 55566766666666666666666666666665543
No 49
>PRK11017 codB cytosine permease; Provisional
Probab=97.20 E-value=0.098 Score=47.72 Aligned_cols=112 Identities=13% Similarity=0.113 Sum_probs=66.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhccccCCcccCcHHHHHHHHcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026491 48 LGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAA 127 (238)
Q Consensus 48 ~G~~~G~i~l~~~~~~~~yt~~lL~~~~~~~~~~~~sY~~l~~~~~G~~~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~ 127 (238)
+++...++.+++...+..--..+..+.-++.| .++..+.|..||.+|..+..+...+..+|-......+.++.+++.
T Consensus 39 Ls~~~ai~aiilG~~i~~~~~~l~~~~G~k~G---~~~~v~sR~~FG~~Gs~l~~~~~~i~~igW~av~~~~~~~~l~~~ 115 (404)
T PRK11017 39 LSFVDFLLAVLIGNLLLGIYTAALGYIGAKTG---LSTHLLARFSFGEKGSWLPSLLLGFTQVGWFGVGVAMFAIPVVKA 115 (404)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhccC---cCHHHHHHHHhchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 33334444444443333333333333323333 579999999999999998888888888888888777788776654
Q ss_pred HHHHhcCCCCCCchhhHHHHHHHHHHHHhcCCChhhHHHHHHHHH
Q 026491 128 FVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVST 172 (238)
Q Consensus 128 ~~~~~~~~~~~~~~~~iii~~~~~~lpl~~l~~l~~l~~~S~~~~ 172 (238)
+. .+...+.+++.++. .+..... .|.+++++.++.
T Consensus 116 ~~--------~~~~~~~~i~~~l~-~~~~~~G-~~~i~~~~~~~~ 150 (404)
T PRK11017 116 TG--------LDINLLIVLSGLLM-TVTAYFG-ISALTILSRIAV 150 (404)
T ss_pred hC--------CCHHHHHHHHHHHH-HHHHHHH-HHHHHHHHHHHH
Confidence 31 22233555555555 4554443 455555555554
No 50
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=97.20 E-value=0.11 Score=47.07 Aligned_cols=138 Identities=15% Similarity=0.140 Sum_probs=87.3
Q ss_pred hHHHHHHHHhhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCCcccCcHHHHHHHHcCccchhH
Q 026491 21 WFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYGRRAYAL 100 (238)
Q Consensus 21 ~~~a~~~l~~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~~~~~~~~~~sY~~l~~~~~G~~~~~~ 100 (238)
|....+|+.+-..|..... +++...++.+++...+..--.-+....-++.| .++.-+.|..||+++..+
T Consensus 7 W~~~~~~v~~~~~G~~l~~--------L~~~~ai~aiilG~~i~~~~~~l~~~~G~~~G---l~~~v~sR~~FG~~Gs~~ 75 (386)
T TIGR02358 7 WFGAAISIAEIQTGALLAP--------LGLTRGLLAILLGHLVGVLLLSAAGVIGADTG---LSAMGSLKLSLGSKGSVL 75 (386)
T ss_pred HHHHHhhHHHHHHHHHHHh--------ccHHHHHHHHHHHHHHHHHHHHHHHHhhcccC---cCHHHHHHHHHccchhhH
Confidence 5566666666666653211 33333444444443333333333333333333 479999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhcCCChhhHHHHHHHHHHH
Q 026491 101 TWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVL 174 (238)
Q Consensus 101 v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~~lpl~~l~~l~~l~~~S~~~~~~ 174 (238)
..+...+..+|--.......|+.++.+.+...+. .....++++++++. ++... ...|.++++..++...
T Consensus 76 ~~~l~~i~~igW~~v~~~~gg~~l~~~~~~~~~~---~~~~~~~~i~~~l~-~~~~~-~G~~~i~~~~~~~~~~ 144 (386)
T TIGR02358 76 PSLLNLLQLVGWTAVMIIVGAKAASLLGGRLFGE---ESPMLWILIVGILV-TLWLL-SGPLAFVWLNNWSVWL 144 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CchHHHHHHHHHHH-HHHHH-HHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998754321 12234555655544 34443 4567777777777543
No 51
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=97.15 E-value=0.025 Score=50.64 Aligned_cols=109 Identities=14% Similarity=0.121 Sum_probs=83.3
Q ss_pred CccccccchhHHHHHHHHhhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHH----HHHHHHHHHHhccccCCcccCcHHH
Q 026491 12 FFHLEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATI----VSLNANALIAKLHEFGGKRHIRYRD 87 (238)
Q Consensus 12 ~~~~~~~~s~~~a~~~l~~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~----~~~yt~~lL~~~~~~~~~~~~sY~~ 87 (238)
||.|.-..+.+...-|=..++-|+|-+-=|-. -++-||+++.+=+++.++ +-.|......- ++.| +|.+|
T Consensus 45 DGvDYvP~~~~vlfghhf~sIAGaGPI~GPi~-aa~~GwlPa~lWI~~G~if~GaVHD~~sl~~Sv--R~~G---~Si~~ 118 (376)
T PF02554_consen 45 DGVDYVPTNKWVLFGHHFASIAGAGPIVGPIL-AAQFGWLPALLWIVFGCIFAGAVHDYGSLMASV--RHKG---KSIGE 118 (376)
T ss_pred CCCCCCCCchHHhhHHHHHHHhccccchHHHH-HHHhcchHHHHHHHHccHHHHHHHHHHHHhhhh--cCCC---ccHHH
Confidence 44444455777788888889999999988988 799999988876665544 44454444321 2223 48999
Q ss_pred HHHHHcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026491 88 LAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKA 126 (238)
Q Consensus 88 l~~~~~G~~~~~~v~~~~~i~~~g~~v~yli~~~~~l~~ 126 (238)
++++..||++|.+..++..+.++-...++....++.+..
T Consensus 119 i~~~~lG~~~~~lf~~f~~~~lilV~avF~~v~a~~~~~ 157 (376)
T PF02554_consen 119 IAGKYLGKRAKKLFLIFIFFLLILVIAVFADVVANTFVN 157 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999988888888888877754
No 52
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=97.11 E-value=0.029 Score=52.43 Aligned_cols=203 Identities=13% Similarity=0.066 Sum_probs=126.3
Q ss_pred ccccchhHHHHHHHHhhhhhhhhh-hhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCCcccCcHHHHHHHHc
Q 026491 15 LEMLDSWFQVGFVLTTGINSAYVL-GYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIY 93 (238)
Q Consensus 15 ~~~~~s~~~a~~~l~~~~iG~GiL-alP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~~~~~~~~~~sY~~l~~~~~ 93 (238)
-+|+-..++-..--+...+|+|.+ +.-.+ .+++|-..-++.-++.+.+.+..+.-|.+...... ..-+|...+.+.-
T Consensus 42 lkR~LK~RHl~MIAiGG~IGTGLfvgsG~~-l~~aGP~g~li~y~i~G~~vy~vm~sLGEma~~~P-~sGsF~~ya~rfv 119 (541)
T COG0833 42 LKRSLKSRHLQMIAIGGAIGTGLFVGSGKA-LSQAGPAGLLIAYLIIGIMVYFVMQSLGELAVFYP-VSGSFSTYATRFV 119 (541)
T ss_pred hhhhhhHHHHHHHHhccccccceeeecchh-hhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCCchhhhhhhhc
Confidence 345667777777788899999975 55667 99999988888899999999999999998732111 1235888888888
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhc--CCChhhHHH-HHHH
Q 026491 94 GRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIG--IPNLSALGV-WLGV 170 (238)
Q Consensus 94 G~~~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~~lpl~~--l~~l~~l~~-~S~~ 170 (238)
+|-....+.....+.-.-+.-.-++.++..++.+++ + ..+...|+.++.+++ +.+.. .|.+.+.-+ +|.+
T Consensus 120 dpa~GFa~gWnYw~~w~v~~~~El~aa~~vi~yW~p-----~-~v~~~~w~~iF~~~i-~~iN~~~Vk~fGE~Efw~s~i 192 (541)
T COG0833 120 DPAFGFALGWNYWLNWAVTLPLELTAASLVIQYWFP-----D-TVPPWIWIAIFLVLI-FLLNLFGVKGFGETEFWFSSI 192 (541)
T ss_pred CchHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhcC-----C-CCChHHHHHHHHHHH-HHHHHhcccccceehHHHHHH
Confidence 887666666666665555556666667766665542 1 245568888877766 34433 356666544 5555
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCC-CCCcCCC---CCCcchhhhhhHhHHHHHHHHh-ccCch
Q 026491 171 STVLSTIYIVIAIWLSVRDGLKN-PARDYSI---PGTTATKIFESIGACANLVFAF-NTGML 227 (238)
Q Consensus 171 ~~~~~~~~~~i~~~~~i~~~~~~-~~~~~~~---~~~~~~~~~~~~~a~gi~~Faf-g~~v~ 227 (238)
=++..+.+.++.++ .+.-+.++ +....+. ++.-...+-++...+-+..|+| |..++
T Consensus 193 KV~~ii~Fii~gii-~~~Gg~~~~~~ig~~yw~~pg~F~~gf~g~~~v~v~a~Fsf~GtElv 253 (541)
T COG0833 193 KVLTIIGFIILGII-IICGGGPTHGYIGFNYWHDPGAFAGGFKGFCSVFVIAAFSFSGTELV 253 (541)
T ss_pred HHHHHHHHHHHHHH-HhcCCCCCCCCcceeeecCCCCCCcchHHHHHHHhhheeeeeceeee
Confidence 55554444433322 22222221 1111111 1111223556677788888999 45433
No 53
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=97.07 E-value=0.23 Score=46.42 Aligned_cols=81 Identities=11% Similarity=0.035 Sum_probs=47.8
Q ss_pred cccchhHHHHHHHHhhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHHHH----HHHHHHHhcccc-CCcccCcHHHHHH
Q 026491 16 EMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSL----NANALIAKLHEF-GGKRHIRYRDLAG 90 (238)
Q Consensus 16 ~~~~s~~~a~~~l~~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~~~----yt~~lL~~~~~~-~~~~~~sY~~l~~ 90 (238)
+||-++++...-.+.+++|.+ .+|.+ +++.|.. .++..++.+++.. .+.--|...+++ .| .--.-.+
T Consensus 6 ~~~l~~~~l~~~~~~~vig~~--~~~~~-~~~~G~~-~i~~~~i~~~~~~l~~al~~aEL~s~~P~~aG----G~Y~w~~ 77 (496)
T PRK15238 6 KKKLSLIGLILMIFTSVFGFA--NSPRA-FYLMGYS-AIPWYILSAILFFIPFALMMAEYGSAFKDEKG----GIYSWMN 77 (496)
T ss_pred cCeeeHHHHHHHHHHHHHhCC--chHHH-HHHcChH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC----cHHHHHH
Confidence 567899998888889999876 56887 8888863 4444444443322 222233333332 23 2233455
Q ss_pred HHcCccchhHHHHH
Q 026491 91 HIYGRRAYALTWGL 104 (238)
Q Consensus 91 ~~~G~~~~~~v~~~ 104 (238)
+++||+..++....
T Consensus 78 ~~~G~~~gf~~~w~ 91 (496)
T PRK15238 78 KSVGPKFAFIGTFM 91 (496)
T ss_pred HHcCchHHHHHHHH
Confidence 66999877654433
No 54
>PRK11375 allantoin permease; Provisional
Probab=97.04 E-value=0.28 Score=45.88 Aligned_cols=144 Identities=13% Similarity=0.067 Sum_probs=84.2
Q ss_pred hHHHHHHHHhhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCCcccCcHHHHHHHHcCccchhH
Q 026491 21 WFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYGRRAYAL 100 (238)
Q Consensus 21 ~~~a~~~l~~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~~~~~~~~~~sY~~l~~~~~G~~~~~~ 100 (238)
|....+|+.+-..+.|.+++ .+++...++.+++...+..--+.+..+.-.+.| .++.-+.|..||.+|..+
T Consensus 36 W~g~~~~i~~~~~~g~~l~~------GLs~~~ai~ai~lG~~i~~~~~~l~g~~G~~~G---l~~~v~sR~sFG~~Gs~l 106 (484)
T PRK11375 36 WMGSVHNVPNYVMVGGFFIL------GLSTFSIMLAIILSAFFIAAVMVLNGAAGSKYG---VPFAMILRASYGVRGALF 106 (484)
T ss_pred HHHHhccHHHHHHHHHHHHc------cchHHHHHHHHHHHHHHHHHHHHHhcccccccC---CChhHhHHHHHccccchH
Confidence 44455555554344444432 233444555555554444444444444333333 579999999999999888
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcC-----CC----CCCchhhHH--HHHHHHHHHHhcCCChhhHHHHH
Q 026491 101 TWGLQY-VNLFMINTGYIILAGQALKAAFVLFWKD-----DH----TMKLPYFIA--IAGFVCALFAIGIPNLSALGVWL 168 (238)
Q Consensus 101 v~~~~~-i~~~g~~v~yli~~~~~l~~~~~~~~~~-----~~----~~~~~~~ii--i~~~~~~lpl~~l~~l~~l~~~S 168 (238)
..+... +..+|--.....+.|+.+..+.+...+. ++ ......++. ++.++. ++.. ....|.+++++
T Consensus 107 ~~~~rai~~~igW~~vqt~~~g~al~~~l~~i~~~~~~~~~~~~~~g~~~~~~i~~~i~~~l~-~~~~-~~g~~~i~~l~ 184 (484)
T PRK11375 107 PGLLRGGIAAIMWFGLQCYAGSLALLILIGKIWPGFLTLGGDFTLLGLSLPGLITFLIFWLVN-VGIG-FGGGKVLNKFT 184 (484)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCcHHHHHHHHHHHHHH-HHHH-HcCHHHHHHHH
Confidence 888874 5778888889999999998877654321 10 112222222 333333 4553 45677787777
Q ss_pred HHHHHHH
Q 026491 169 GVSTVLS 175 (238)
Q Consensus 169 ~~~~~~~ 175 (238)
.++....
T Consensus 185 ~i~~p~~ 191 (484)
T PRK11375 185 AILNPCI 191 (484)
T ss_pred HHHHHHH
Confidence 7775433
No 55
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=97.03 E-value=0.013 Score=51.56 Aligned_cols=102 Identities=17% Similarity=0.175 Sum_probs=77.1
Q ss_pred HHHHHHHhhhhhhhhhh---hhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCCcccCcHHHHHHHHcCccchh
Q 026491 23 QVGFVLTTGINSAYVLG---YPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYGRRAYA 99 (238)
Q Consensus 23 ~a~~~l~~~~iG~GiLa---lP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~~~~~~~~~~sY~~l~~~~~G~~~~~ 99 (238)
+-.|-.+.+++|+|-=+ .=.- |..-|| .|...+++++.+-..++.++.+...+-+ ..+|+|+-++.+||+...
T Consensus 7 ~~~f~~ig~~vGAGfAsGqEi~QF-F~~~G~-~s~~gIivs~vlf~~~g~vim~ig~~f~--a~~y~~~~~~v~~~~~~k 82 (349)
T COG3949 7 RWAFAFIGTVVGAGFASGQEIMQF-FGKYGV-YSILGIILSTVLFTLSGAVIMTIGKKFN--ATSYREILKYVSGPKFAK 82 (349)
T ss_pred HHHHHHHHHhhcccccchHHHHHH-HHHhhh-hhhHHHHHHHHHHHHHHHHHHHHHHHhc--ccchHHHHHHHhhHHHHH
Confidence 34455566788887533 1113 456676 5777888888888888888877643322 358999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026491 100 LTWGLQYVNLFMINTGYIILAGQALKAAF 128 (238)
Q Consensus 100 ~v~~~~~i~~~g~~v~yli~~~~~l~~~~ 128 (238)
+.+..+...+++++++-+--.|.++++.+
T Consensus 83 i~d~~iif~lf~~~vVM~AGags~~~e~~ 111 (349)
T COG3949 83 IIDIIIIFFLFSTAVVMLAGAGSLLEEMF 111 (349)
T ss_pred HHHHHHHHHHHHHHHHHhccchhHHHHHh
Confidence 99999999999999998888888887765
No 56
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=97.02 E-value=0.016 Score=53.26 Aligned_cols=81 Identities=20% Similarity=0.217 Sum_probs=55.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhccccCCcccCcHHHHHHHHcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026491 48 LGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAA 127 (238)
Q Consensus 48 ~G~~~G~i~l~~~~~~~~yt~~lL~~~~~~~~~~~~sY~~l~~~~~G~~~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~ 127 (238)
+++..+++.+++..++..--.-+....-.+.| .++..+.|..||.++..+..+...+.++|-...-..+.|+.+..+
T Consensus 39 L~~~~ailai~~G~~l~~i~~~~~~~~G~r~G---l~~~v~sR~~FG~~Gs~l~~~l~~i~~igW~av~~~~~g~al~~~ 115 (440)
T PF02133_consen 39 LSFWQAILAILIGNLLGAILVALMGIIGPRTG---LPTMVLSRASFGYRGSKLPSLLRAISAIGWFAVNTWLGGQALAAL 115 (440)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHHHTHHHHCC------HHHHTTTTS-TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhcccccccC---CCchhcchhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555544444333334444333444 468999999999999999999999999999999999999999998
Q ss_pred HHHH
Q 026491 128 FVLF 131 (238)
Q Consensus 128 ~~~~ 131 (238)
.+..
T Consensus 116 ~~~~ 119 (440)
T PF02133_consen 116 LGII 119 (440)
T ss_dssp HHCC
T ss_pred hhhh
Confidence 8743
No 57
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=96.96 E-value=0.098 Score=48.18 Aligned_cols=77 Identities=18% Similarity=0.095 Sum_probs=53.7
Q ss_pred HHHHHHHcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhcCCChhhHH
Q 026491 86 RDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALG 165 (238)
Q Consensus 86 ~~l~~~~~G~~~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~~lpl~~l~~l~~l~ 165 (238)
-.++|..||.++.++.++.+.+.++|...+-.+..|+.... ....+...|+++.++++ +..... -.|.+.
T Consensus 84 mi~sR~~fG~~Gs~l~sll~~~~~iGW~~v~~~l~~~a~~~--------~~~~~~~~~ili~g~l~-~l~~if-G~r~l~ 153 (442)
T COG1457 84 MILSRYPFGVKGSILPSLLNGITLIGWFGVNVILSGIAIGS--------GTGLPVWAGILIIGVLM-TLVTIF-GYRALH 153 (442)
T ss_pred heeecccccchhHHHHHHHHHHHHhhHHHHHHHHhcccccc--------CCCCcHHHHHHHHHHHH-HHHHHH-hHHHHH
Confidence 35788899999999999999999999999999999997211 12344556777777665 344333 234444
Q ss_pred HHHHHHH
Q 026491 166 VWLGVST 172 (238)
Q Consensus 166 ~~S~~~~ 172 (238)
.++.++.
T Consensus 154 ~l~~~a~ 160 (442)
T COG1457 154 KLERIAV 160 (442)
T ss_pred HHHHHHH
Confidence 4444443
No 58
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=96.69 E-value=0.2 Score=46.02 Aligned_cols=83 Identities=13% Similarity=-0.030 Sum_probs=53.3
Q ss_pred ccchhHHHHHHHHhhhhhhh-hhhhhHHhhhhhhhHHHH----HHHHHHHHHHHHHHHHHHhc-cccCCcccCcH-----
Q 026491 17 MLDSWFQVGFVLTTGINSAY-VLGYPGTVMVPLGWIAGV----VGLIIATIVSLNANALIAKL-HEFGGKRHIRY----- 85 (238)
Q Consensus 17 ~~~s~~~a~~~l~~~~iG~G-iLalP~a~~~~~G~~~G~----i~l~~~~~~~~yt~~lL~~~-~~~~~~~~~sY----- 85 (238)
++-|-+|+.+-...+.+|+| |+++|.| .+..| +|- -...+.+..+-|.-..|..- .++++ ..+|
T Consensus 45 g~iS~fqA~~~ala~~VG~GnI~Gva~A-i~~GG--pGAvFWMWI~allGm~~~~~e~~L~~~yr~~~~--~g~~~GGP~ 119 (425)
T TIGR00835 45 GGVSSFQALFTSLAARVGIGNIVGVATA-IAIGG--PGAVFWMWVTAFIGMATKFVESTLAQKYRERDA--DGVFRGGPM 119 (425)
T ss_pred CCccHHHHHHHHHHHHHhhhHHHHHHHH-HHhcC--CCchHHHHHHHHHHHHHHHHHHHHHHHeeeeCC--CCCEecChH
Confidence 34689999999999999998 9999999 88887 343 23333333444444333333 22222 1236
Q ss_pred HHHHHHHcCccchhHHHHH
Q 026491 86 RDLAGHIYGRRAYALTWGL 104 (238)
Q Consensus 86 ~~l~~~~~G~~~~~~v~~~ 104 (238)
-++-+...|||...+..++
T Consensus 120 yyi~~gl~~k~lg~lfa~~ 138 (425)
T TIGR00835 120 YYIKKGLGMRWLAVLFAVF 138 (425)
T ss_pred HHHHHHhCccHHHHHHHHH
Confidence 7888887788765555554
No 59
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=96.65 E-value=0.016 Score=53.69 Aligned_cols=97 Identities=14% Similarity=0.012 Sum_probs=61.3
Q ss_pred hhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCCcccCcHHHHHHHHcCccchhHHHHHHHHHH
Q 026491 30 TGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYGRRAYALTWGLQYVNL 109 (238)
Q Consensus 30 ~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~~~~~~~~~~sY~~l~~~~~G~~~~~~v~~~~~i~~ 109 (238)
..++|+|++.-...+..+.|....++..++.+++...++.-+.+...+.. +.-++-+.+++.+||.....+.....+..
T Consensus 8 g~~ig~g~f~~~g~~~~~~G~~~~~la~li~~i~~~~~~~~~~ems~~~p-~~Gg~y~y~~~~lg~~~Gf~~gw~y~~~~ 86 (478)
T PF00324_consen 8 GGIIGTGLFLGSGFAIAAAGPGGAPLAYLIAGIIVLLVALSLAEMSRRFP-SAGGFYAYASRGLGPALGFAAGWAYWLSY 86 (478)
T ss_pred HHHHHHHHHHHHHHHHHhcccccchhHhHHHHHHHHhhhhhhhhhhhhhc-cccchhhhhhhccCCcCCceeeHHHHHHH
Confidence 45677777654443388888866677777777777777777766633111 12256677778899987766666655555
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 026491 110 FMINTGYIILAGQALKAA 127 (238)
Q Consensus 110 ~g~~v~yli~~~~~l~~~ 127 (238)
.-.........+..++..
T Consensus 87 ~~~~~~~~~~~~~~~~~~ 104 (478)
T PF00324_consen 87 IAAIAAEATAAGSFLQFW 104 (478)
T ss_pred HHHHHhhhhhhhhhhccc
Confidence 555555555555555443
No 60
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=96.28 E-value=0.73 Score=42.76 Aligned_cols=149 Identities=13% Similarity=0.062 Sum_probs=93.8
Q ss_pred cccchhHHHHHHHHhhhhhh-hhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHh----ccccCCcccCcHHHHHH
Q 026491 16 EMLDSWFQVGFVLTTGINSA-YVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAK----LHEFGGKRHIRYRDLAG 90 (238)
Q Consensus 16 ~~~~s~~~a~~~l~~~~iG~-GiLalP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~----~~~~~~~~~~sY~~l~~ 90 (238)
.|+-+++.....+..+.+|+ ..++.|-. .-+-|+.+....... ..+.+.....+.+ ..++. +..|.+|.-+
T Consensus 39 gr~l~~~~~~~s~~at~~s~~t~~g~~g~-~y~~G~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~T~~e~l~ 114 (471)
T TIGR02119 39 GRSMGGFVLAMTLVATYGSASSFIGGPGI-AYNYGLGWVLLAMIQ-VPTGYFVLGVLGKKFAIISRKY--NAITINDVLK 114 (471)
T ss_pred CCcccHHHHHHHHHHHHhhHHHHcCcHHH-HHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHc--CCccHHHHHH
Confidence 46668888888888888877 45677776 566676421111110 0111222222222 12222 3568999999
Q ss_pred HHcCccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhcCCChhhHHHHHH
Q 026491 91 HIYGRRA-YALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLG 169 (238)
Q Consensus 91 ~~~G~~~-~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~~lpl~~l~~l~~l~~~S~ 169 (238)
+-||++. +++..+...+.+++..++.+...|..++.+++ ++...-+++.++++ +.-....-++...++..
T Consensus 115 ~Ryg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~g--------i~~~~~iii~~~iv-~iYt~~GG~~av~~td~ 185 (471)
T TIGR02119 115 ARYNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLTG--------LSYLTALFIFSSSV-LIYTTFGGFRAVALTDA 185 (471)
T ss_pred HHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCHHHHHHHHHHHH-HHHHHhhhHHHHHHHHH
Confidence 9999664 77788888888888888888888888877642 33334445554444 56667889999999888
Q ss_pred HHHHHHHH
Q 026491 170 VSTVLSTI 177 (238)
Q Consensus 170 ~~~~~~~~ 177 (238)
+=.+..+.
T Consensus 186 iQ~~v~~~ 193 (471)
T TIGR02119 186 IQGIVMFT 193 (471)
T ss_pred HHHHHHHH
Confidence 87544333
No 61
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=96.27 E-value=0.59 Score=43.93 Aligned_cols=82 Identities=15% Similarity=0.075 Sum_probs=44.0
Q ss_pred cccchhHHHHHHHHhhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHHHHH--HHHHHHhc---cc-cCCcccCcHHHHH
Q 026491 16 EMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLN--ANALIAKL---HE-FGGKRHIRYRDLA 89 (238)
Q Consensus 16 ~~~~s~~~a~~~l~~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~~~y--t~~lL~~~---~~-~~~~~~~sY~~l~ 89 (238)
++|-+.++-+.-.+.++. ++-.+| + +++.|+ +.+...+.+.+.+. ......+. .+ +.| ..-.-+
T Consensus 3 ~~~l~~~~~~~~~~~~v~--~~~~~~-~-~a~~G~--~~i~~~i~~~l~~~lp~al~~AELas~~p~~~G----G~y~wv 72 (507)
T TIGR00910 3 AKKLSLFGFFAITASMVL--AVYEYP-T-FATSGF--HLVFFLLLGGILWFIPVALCAAEMATVDGWEEG----GIFAWV 72 (507)
T ss_pred CcEeeHHHHHHHHHHHHH--HHHhhH-H-HHHhhH--HHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCC----Ceeeeh
Confidence 345666655544444444 667888 5 789895 44445555444433 34444443 21 222 233445
Q ss_pred HHHcCccchhHHHHHHHH
Q 026491 90 GHIYGRRAYALTWGLQYV 107 (238)
Q Consensus 90 ~~~~G~~~~~~v~~~~~i 107 (238)
++++||+...+....+-+
T Consensus 73 ~~a~G~~~Gf~~~~~~W~ 90 (507)
T TIGR00910 73 SNTLGERFGFAAIFFGWF 90 (507)
T ss_pred hhccCccHHHHHHHHHHH
Confidence 777999876655444333
No 62
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=96.03 E-value=0.38 Score=43.56 Aligned_cols=149 Identities=20% Similarity=0.171 Sum_probs=85.2
Q ss_pred cccchhHHHHHHHHhhhhhh-hhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCCcccCcHHHHHHHHcC
Q 026491 16 EMLDSWFQVGFVLTTGINSA-YVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYG 94 (238)
Q Consensus 16 ~~~~s~~~a~~~l~~~~iG~-GiLalP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~~~~~~~~~~sY~~l~~~~~G 94 (238)
.|+-+++...+.+..+.+|+ ..++.|-. .-+-|+. +....+............+.+...+. +..|.+|.-++-||
T Consensus 5 gr~~~~~~~~~s~~at~~s~~t~~G~~g~-~y~~G~~-~~~~~~~~~~~~~~~~~~~~~~~r~~--~~~T~~e~~~~Ryg 80 (406)
T PF00474_consen 5 GRSLGWWVVAFSLVATWISAWTFIGFPGF-AYSYGIS-GLWYAIGYAIGFLLFALFFAPRLRRS--GAVTIPEYLEKRYG 80 (406)
T ss_dssp -S---HHHHHHHHHHHHSSHHHHTHHHHH-HHHT-GG-GGHHHHHHHHHHHHHHHHTHHHHHHT--T--SHHHHHHHHT-
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHH-hhcCCcc-eeeeccccchhHHHHHHHHHHhhccc--chhhhhhhhhhhcC
Confidence 35667888888888877776 67788887 6677874 33333333333333334444433332 35689999999999
Q ss_pred ccc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhcCCChhhHHHHHHHHH
Q 026491 95 RRA--YALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVST 172 (238)
Q Consensus 95 ~~~--~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~~lpl~~l~~l~~l~~~S~~~~ 172 (238)
++. +.+..+..++..+......+...|..++.++. ++...-+++.+++. +.-...--++...++..+-.
T Consensus 81 ~~~~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~g--------i~~~~~~~i~~~i~-~iYt~~GGl~av~~td~iQ~ 151 (406)
T PF00474_consen 81 SKALLRILAAIIIIVFMIPYLAAQLVGGGALLSVLFG--------IPYNTAILIVGVIV-IIYTFFGGLRAVAWTDFIQG 151 (406)
T ss_dssp HHH-HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT----------HHHHHHHHHHHH-HHTTCTT------SHHHHHH
T ss_pred Cchhhhhhcccccchhhhhhhhccccccccchhhccc--------hhhhHHHHHHHHHH-HHhhhhhhHhhhhHHHHHHH
Confidence 988 66655656666677777777778877776642 34444455555555 56777888888888887775
Q ss_pred HHHHH
Q 026491 173 VLSTI 177 (238)
Q Consensus 173 ~~~~~ 177 (238)
+..+.
T Consensus 152 ~i~~~ 156 (406)
T PF00474_consen 152 VIMII 156 (406)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 63
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=95.95 E-value=0.033 Score=52.84 Aligned_cols=222 Identities=11% Similarity=0.002 Sum_probs=115.9
Q ss_pred ccccchhHHHHHHHHhhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCCcccCcHHHHHHHHcC
Q 026491 15 LEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYG 94 (238)
Q Consensus 15 ~~~~~s~~~a~~~l~~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~~~~~~~~~~sY~~l~~~~~G 94 (238)
-+|+.++++-..-=+.+.+|+|++-.-..+.++.|-..-++..++.+...+.+..-+.+...+..+..-++---+.+..|
T Consensus 28 lkR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~~P~~aGs~~~ya~~~i~ 107 (554)
T KOG1286|consen 28 LKRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVRFPVSAGSFYTYAYRFVG 107 (554)
T ss_pred hhccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHheecccccccceeeeeeeeC
Confidence 34556777766666778999999866655488888766666677777777777777777632111100123334455577
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhcCCCCCCchhhHHHHHHHH-HHHHhcCCChhhHHHHHHHH
Q 026491 95 RRAYALTWGLQYVNLFMINTGYIILAGQALKAAFV--LFWKDDHTMKLPYFIAIAGFVC-ALFAIGIPNLSALGVWLGVS 171 (238)
Q Consensus 95 ~~~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~--~~~~~~~~~~~~~~iii~~~~~-~lpl~~l~~l~~l~~~S~~~ 171 (238)
|-...++.....++-+-.+-+-+...+..++.+.. .........+.-.|+.++.++. ++.+...+-+-+.++.+.+.
T Consensus 108 e~~aF~~gWny~l~y~i~~a~e~~a~s~~~~~w~~~~~~~~~~~~~~~~~~~~~fla~~v~in~~gv~~~ge~ef~~~~~ 187 (554)
T KOG1286|consen 108 ESLAFAIGWNYLLEYVIGLAAEARAWSSYLDYWTGASLIGILVDTVNPGGWIPDFLAFILIINLFGVLAYGEVEFSLAFN 187 (554)
T ss_pred cHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccccccccCCCCCccHHHHHHHHHHHHHHHHhhccceeehHHHH
Confidence 87766777666666655555666666666665540 0000001122234444433333 23333445445555555554
Q ss_pred HHHHHHHHHHHHHHHhhcC-CCCCCCcCCC------CC-CcchhhhhhHhHHHHHHHHh-ccCchhhhhhcccCC
Q 026491 172 TVLSTIYIVIAIWLSVRDG-LKNPARDYSI------PG-TTATKIFESIGACANLVFAF-NTGMLPEIQVREEFR 237 (238)
Q Consensus 172 ~~~~~~~~~i~~~~~i~~~-~~~~~~~~~~------~~-~~~~~~~~~~~a~gi~~Faf-g~~v~p~I~~~M~~~ 237 (238)
-+.+.+-.++.. ..+.-| .++...++.- ++ .....+-+++.++-+..|+| |.-.+-.--+|-|+|
T Consensus 188 kvl~~v~~~Il~-iVi~~G~~~~d~~~~ig~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~~a~E~kNP 261 (554)
T KOG1286|consen 188 KILTAVGFIILA-IVIIAGGGPADVKNWIGFRYWHDPGAFFPFGFKGVLSGAATAFFSFIGFELVATTAEEAKNP 261 (554)
T ss_pred HHHHHHHHHHhh-eeeecCCCcCCcCCCcCccccCCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHHHHHhccCC
Confidence 333322222211 112222 2111111111 11 11112456778899999999 566665556666665
No 64
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=95.88 E-value=1 Score=40.83 Aligned_cols=148 Identities=14% Similarity=0.079 Sum_probs=93.4
Q ss_pred cccchhHHHHHHHHhhhhhh-hhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCCcccCcHHHHHHHHcC
Q 026491 16 EMLDSWFQVGFVLTTGINSA-YVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYG 94 (238)
Q Consensus 16 ~~~~s~~~a~~~l~~~~iG~-GiLalP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~~~~~~~~~~sY~~l~~~~~G 94 (238)
.|+-+++...+.+..+.+++ ..++.|.. .-+-|+. +...............++..+..++. +..|.+|.-+.-||
T Consensus 2 gr~~~~~~~~~s~~at~~s~~t~ig~~~~-~y~~G~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~T~~e~l~~Ryg 77 (407)
T TIGR00813 2 GRSLGGWVVAASLFASYISASQFLGLPGA-IYAYGFA-IGFYELGALVLLIILGWLFVPIFINN--GAYTMPEYLEKRFG 77 (407)
T ss_pred CCCCCcHHHHHHHHHHHhhHHHHhcCcHH-HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHc--CCCchhHHHHHHhC
Confidence 35667777777777666665 67788877 5566753 32222222222222333333332222 35789999999999
Q ss_pred cc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhcCCChhhHHHHHHHHHH
Q 026491 95 RR-AYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTV 173 (238)
Q Consensus 95 ~~-~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~~lpl~~l~~l~~l~~~S~~~~~ 173 (238)
++ .|.+..+...+..+......+...|..++.+++ ++...-+++.++++ +.-...--++...++..+=.+
T Consensus 78 ~~~~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~g--------i~~~~~~ii~~~i~-~~Yt~~GG~~av~~Td~iQ~~ 148 (407)
T TIGR00813 78 KRILRGLSVLSLILYIFLYMSVDLFSGALLIELITG--------LDLYLSLLLLGAIT-ILYTVFGGLKAVVWTDTIQAV 148 (407)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------chHHHHHHHHHHHH-HHHHHHcchHHHHHHHHHHHH
Confidence 85 566667777788888888888888888887642 22233344444444 466677889999888888755
Q ss_pred HHH
Q 026491 174 LST 176 (238)
Q Consensus 174 ~~~ 176 (238)
..+
T Consensus 149 i~~ 151 (407)
T TIGR00813 149 IMI 151 (407)
T ss_pred HHH
Confidence 433
No 65
>PRK15015 carbon starvation protein A; Provisional
Probab=95.86 E-value=0.24 Score=47.58 Aligned_cols=108 Identities=13% Similarity=0.025 Sum_probs=77.1
Q ss_pred CccccccchhHHHHHHHHhhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHHH----HHHHHHHHhccccCCcccCcHHH
Q 026491 12 FFHLEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVS----LNANALIAKLHEFGGKRHIRYRD 87 (238)
Q Consensus 12 ~~~~~~~~s~~~a~~~l~~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~~----~yt~~lL~~~~~~~~~~~~sY~~ 87 (238)
||.++-..+-+--.-|=+.++-|+|-+-=|-- -++.||.+|.+=+++..++. .|..... ..++.| +|-.|
T Consensus 76 DG~DYvPt~k~VLfGHHFasIAGAGPivGPvl-Aa~~GwlP~~LWIl~G~vf~GaVhD~~~L~~--S~R~~G---rSig~ 149 (701)
T PRK15015 76 DGLDYVPTDKKVLFGHHFAAIAGAGPLVGPVL-AAQMGYLPGMIWLLAGVVLAGAVQDFMVLFV--STRRDG---RSLGE 149 (701)
T ss_pred CCCCcCcCCccchhHHHHHHHhccCccHHHHH-HHHHcchHHHHHHHHcceeechhhhhhheee--eecCCC---ccHHH
Confidence 44444444556666788889999999999988 78999999998777655432 2222211 112223 58999
Q ss_pred HHHHHcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026491 88 LAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALK 125 (238)
Q Consensus 88 l~~~~~G~~~~~~v~~~~~i~~~g~~v~yli~~~~~l~ 125 (238)
++++-.||+++.+..+...+.++-...++-....+.+.
T Consensus 150 ia~~~iG~~~~~lfli~i~~iliiviAvfalvvv~al~ 187 (701)
T PRK15015 150 LVKEEMGPTAGVIALVACFMIMVIILAVLAMIVVKALT 187 (701)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999888888777777777777777766663
No 66
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=95.27 E-value=0.31 Score=45.83 Aligned_cols=107 Identities=14% Similarity=0.156 Sum_probs=74.4
Q ss_pred CccccccchhHHHHHHHHhhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHHH----HHHHHHHHhccccCCcccCcHHH
Q 026491 12 FFHLEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVS----LNANALIAKLHEFGGKRHIRYRD 87 (238)
Q Consensus 12 ~~~~~~~~s~~~a~~~l~~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~~----~yt~~lL~~~~~~~~~~~~sY~~ 87 (238)
||.|.-..+.+...-|=+.++-|+|-+-=|-- -+|.||.+|.+=+++.+++. .|....+ ..++.| +|-.|
T Consensus 45 DG~DYVPtnk~vlfGhHFaaIAGAGPivGPvl-AAq~G~Lp~~LWIl~G~VfaGaVhD~~~L~~--SvR~~G---~Si~~ 118 (575)
T COG1966 45 DGVDYVPTNKWVLFGHHFASIAGAGPIVGPAL-AAQYGWLPAFLWILLGCVFAGAVHDYFSLML--SVRHGG---KSIGE 118 (575)
T ss_pred CCcccccCCchhhhHHHHHHHhccCcchhHHH-HHHhcCcHHHHHHHHhhhhhhhhhhhhheee--eeccCC---ccHHH
Confidence 44445556788888888889999999999988 89999999988777665543 2222111 122223 58999
Q ss_pred HHHHHcCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026491 88 LAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQAL 124 (238)
Q Consensus 88 l~~~~~G~~~~~~v~~~~~i~~~g~~v~yli~~~~~l 124 (238)
++++-.||..+.+..+...+-.+-+..++-....+.+
T Consensus 119 ia~~~lG~~a~~~~~~~~l~iliiv~Avfa~vv~~~l 155 (575)
T COG1966 119 IAGKYLGRTAKVFFLLLALILLILVGAVFAAVIAKLL 155 (575)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999987776666655555555544444433
No 67
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=95.26 E-value=0.82 Score=41.45 Aligned_cols=79 Identities=6% Similarity=0.026 Sum_probs=59.3
Q ss_pred CcHHHHHHHHcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhcCCChh
Q 026491 83 IRYRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLS 162 (238)
Q Consensus 83 ~sY~~l~~~~~G~~~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~~lpl~~l~~l~ 162 (238)
.--.+++++.||+.|..++.+...+.|++++++.+...+|.++++++ ..+.+.|.++.++.. ..++ .-.++
T Consensus 255 ~~l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~~~-------k~~y~~~v~~~~l~s-~~ia-~~Gl~ 325 (378)
T TIGR00796 255 QILSAYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSEYFHKLVP-------KLSYKTWVIVFTLFS-FIVA-NLGLT 325 (378)
T ss_pred HHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHH-HHHH-HhCHH
Confidence 35778999999999999999999999999999999999998877642 255677777766665 3332 23566
Q ss_pred hHHHHHHH
Q 026491 163 ALGVWLGV 170 (238)
Q Consensus 163 ~l~~~S~~ 170 (238)
++--.+..
T Consensus 326 ~Ii~~~~P 333 (378)
T TIGR00796 326 QIISISIP 333 (378)
T ss_pred HHHHHHHH
Confidence 65544443
No 68
>PRK09395 actP acetate permease; Provisional
Probab=94.99 E-value=3.4 Score=39.29 Aligned_cols=147 Identities=17% Similarity=0.093 Sum_probs=89.0
Q ss_pred cccchhHHHHHHHHhhhhhh-hhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCCcccCcHHHHHHHHcC
Q 026491 16 EMLDSWFQVGFVLTTGINSA-YVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYG 94 (238)
Q Consensus 16 ~~~~s~~~a~~~l~~~~iG~-GiLalP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~~~~~~~~~~sY~~l~~~~~G 94 (238)
.|+-++|...+.+..+.+++ ..++.|-. .-+.||. +........+-......++.+-..+.+ ..|++|.-+.=||
T Consensus 68 gr~l~~~~~~~si~At~~Sa~tfiG~~g~-~y~~G~~-~~~~~~~~~~g~~~~~~~~~~~~r~~g--~~T~~d~l~~Ryg 143 (551)
T PRK09395 68 GGGITGFQNGLAIAGDYMSAASFLGISAL-VFTSGYD-GLIYSIGFLVGWPIILFLIAERLRNLG--KYTFADVASYRLK 143 (551)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHhhHH-HHHhCHH-HHHHHHHHHHHHHHHHHHHHHHHhhCC--CccHHHHHHHHcC
Confidence 45667887888777777665 56788876 5566763 322222111111111223333222233 4689999888898
Q ss_pred c-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhcCCChhhHHHHHHHHHH
Q 026491 95 R-RAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTV 173 (238)
Q Consensus 95 ~-~~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~~lpl~~l~~l~~l~~~S~~~~~ 173 (238)
+ +.|.+..+...+..+......++-.|..++.++. ++...-+++.++++ +.-...--++...|+..+=.+
T Consensus 144 s~~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~~g--------i~~~~~ili~~~i~-~iYt~~GGm~av~~TD~iQ~i 214 (551)
T PRK09395 144 QGPIRTLSACGSLVVVALYLIAQMVGAGKLIQLLFG--------LNYHVAVVLVGVLM-MVYVLFGGMLATTWVQIIKAV 214 (551)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CCHHHHHHHHHHHH-HHHHhhcchHHHHHHHHHHHH
Confidence 5 4688877777776667677777777777766532 33333344544544 566677888888888877654
Q ss_pred HH
Q 026491 174 LS 175 (238)
Q Consensus 174 ~~ 175 (238)
..
T Consensus 215 im 216 (551)
T PRK09395 215 LL 216 (551)
T ss_pred HH
Confidence 33
No 69
>PRK12488 acetate permease; Provisional
Probab=94.55 E-value=4.4 Score=38.53 Aligned_cols=148 Identities=16% Similarity=0.102 Sum_probs=93.4
Q ss_pred cccchhHHHHHHHHhhhhhhh-hhhhhHHhhhhhhhHHHHHHHHHHHHHHHH-HHHHHHhccccCCcccCcHHHHHHHHc
Q 026491 16 EMLDSWFQVGFVLTTGINSAY-VLGYPGTVMVPLGWIAGVVGLIIATIVSLN-ANALIAKLHEFGGKRHIRYRDLAGHIY 93 (238)
Q Consensus 16 ~~~~s~~~a~~~l~~~~iG~G-iLalP~a~~~~~G~~~G~i~l~~~~~~~~y-t~~lL~~~~~~~~~~~~sY~~l~~~~~ 93 (238)
.|+-++|...+.+..+.+++. .++.|-. .-+.|+. +....+. ..+.+. ...++.+-..+.+ ..|.+|.-+.=|
T Consensus 66 GR~l~~~~~~~si~at~~Sa~sflG~~G~-~y~~G~~-~~~~~~g-~~~g~~~~~~~~a~~lr~~g--~~T~~d~l~~Rf 140 (549)
T PRK12488 66 GGGLTGMQNGLAIAGDMISAASFLGISAM-MFMNGYD-GLLYALG-VLAGWPIILFLIAERLRNLG--KYTFADVVSYRL 140 (549)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHH-HHHhChh-HHHHHHH-HHHHHHHHHHHHHHHHHHCC--CcchHHHHHHHc
Confidence 556688888888888877764 5888877 6667763 3322221 111211 1222333222233 368888887778
Q ss_pred C-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhcCCChhhHHHHHHHHH
Q 026491 94 G-RRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVST 172 (238)
Q Consensus 94 G-~~~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~~lpl~~l~~l~~l~~~S~~~~ 172 (238)
| |+.|.+..+...+..+......++-.|..++.++. ++...=+++.++++ +.-...--++...|+..+=.
T Consensus 141 ~s~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~g--------i~~~~~iii~~~i~-~~Yt~~GGm~av~~td~iQ~ 211 (549)
T PRK12488 141 AQGPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLFG--------ISYLYAVVIVGALM-VLYVTFGGMLATTWVQIIKA 211 (549)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CCHHHHHHHHHHHH-HHHHhccchhHHHHHHHHHH
Confidence 7 56788888888888888888888888888777642 22222244444444 56667788999999888875
Q ss_pred HHHHH
Q 026491 173 VLSTI 177 (238)
Q Consensus 173 ~~~~~ 177 (238)
+..+.
T Consensus 212 ~im~~ 216 (549)
T PRK12488 212 VLLLS 216 (549)
T ss_pred HHHHH
Confidence 44433
No 70
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=94.17 E-value=4.9 Score=37.47 Aligned_cols=151 Identities=17% Similarity=0.088 Sum_probs=88.9
Q ss_pred cccchhHHHHHHHHhhhhhh-hhhhhhHHhhhhhhhHHHHHHH--HHHHHHHH-HHHHHHHhccccCCcccCcHHHHHHH
Q 026491 16 EMLDSWFQVGFVLTTGINSA-YVLGYPGTVMVPLGWIAGVVGL--IIATIVSL-NANALIAKLHEFGGKRHIRYRDLAGH 91 (238)
Q Consensus 16 ~~~~s~~~a~~~l~~~~iG~-GiLalP~a~~~~~G~~~G~i~l--~~~~~~~~-yt~~lL~~~~~~~~~~~~sY~~l~~~ 91 (238)
.|+-+++...+.+..+.+++ ..++.|-. .-+-|+.+-.... .....+.. +-+..+.+..++. +..|.+|.-+.
T Consensus 40 gr~~~~~~~~~s~~at~~s~~t~ig~~g~-~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~--~~~T~~e~l~~ 116 (483)
T PRK09442 40 NRSMGGFVLAMTLIATYISASSFIGGPGA-AYKYGLGWVLLAMIQVPTVWLSLGILGKKFAILARKY--NAVTLNDMLRA 116 (483)
T ss_pred CCCccHHHHHHHHHHHHhhHhHHhCChhH-HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCccHHHHHHH
Confidence 55667787788777766655 67777866 4555653211111 11111111 1111222222222 35689999999
Q ss_pred HcCccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhcCCChhhHHHHHHH
Q 026491 92 IYGRRA-YALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGV 170 (238)
Q Consensus 92 ~~G~~~-~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~~lpl~~l~~l~~l~~~S~~ 170 (238)
-||++. +.+..+...+..++...+.+...|..++.+++ ++...-+++.++++ +.-..+.-++...++..+
T Consensus 117 Ryg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~g--------i~~~~~iii~~~iv-~iYt~~GGl~av~~TD~i 187 (483)
T PRK09442 117 RYQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETATG--------ISYETGLLIFGITV-ALYTAFGGFRAVVLTDAL 187 (483)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CCHHHHHHHHHHHH-HHHHHhccHHHHHHHHHH
Confidence 999764 66666666666677777777788888877642 33333344545544 567778899999988888
Q ss_pred HHHHHHHH
Q 026491 171 STVLSTIY 178 (238)
Q Consensus 171 ~~~~~~~~ 178 (238)
=.+..+..
T Consensus 188 Q~~i~~~~ 195 (483)
T PRK09442 188 QGIVMLVG 195 (483)
T ss_pred HHHHHHHH
Confidence 75543333
No 71
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=92.08 E-value=11 Score=35.49 Aligned_cols=148 Identities=14% Similarity=0.040 Sum_probs=94.1
Q ss_pred ccchhHHHHHHHHhhhhh-hhhhhhhHHhhhhhhhHHHHHHHH---HHHHHHHHHHHHHHhccccCCcccCcHHHHHHHH
Q 026491 17 MLDSWFQVGFVLTTGINS-AYVLGYPGTVMVPLGWIAGVVGLI---IATIVSLNANALIAKLHEFGGKRHIRYRDLAGHI 92 (238)
Q Consensus 17 ~~~s~~~a~~~l~~~~iG-~GiLalP~a~~~~~G~~~G~i~l~---~~~~~~~yt~~lL~~~~~~~~~~~~sY~~l~~~~ 92 (238)
|+-+.+-.......+..+ --.+++|-. .-+.|+..--..+- +......+-...+.+..+ .++..|.+|.-++=
T Consensus 38 R~lg~~v~~ls~~as~~s~~t~lG~~g~-ay~~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~--~~~~~T~~d~l~~R 114 (493)
T COG0591 38 RSLGPFVYALSAAASDTSGWTFLGLPGL-AYASGLSGLWIAIGLLIGAFLLWLLFAPRLRRLAK--ARGATTIPDFLEAR 114 (493)
T ss_pred CcCChHHHHHHHHHHHHHHHHHhcchHH-HHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--ccCCccHHHHHHHH
Confidence 343444555555555555 678888988 66777643222222 222222333333333332 22357999999999
Q ss_pred cC-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhcCCChhhHHHHHHHH
Q 026491 93 YG-RRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVS 171 (238)
Q Consensus 93 ~G-~~~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~~lpl~~l~~l~~l~~~S~~~ 171 (238)
|| |+.|.+..+...+..++.+...++-.|+.++..+. .+...=+++.+..+ ..-..+--+++..|+..+=
T Consensus 115 f~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~g--------i~~~~~~~~~~~~v-~~Yt~~gG~~av~~Td~iq 185 (493)
T COG0591 115 FGSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLFG--------ISYVTGILIGALIV-ALYTFLGGLRAVVWTDFIQ 185 (493)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC--------CCHHHHHHHHHHHH-HHHHHHcChhHHHHHHHHH
Confidence 99 88899999999999999999999999998866542 22222233333333 4666778889999888877
Q ss_pred HHHHH
Q 026491 172 TVLST 176 (238)
Q Consensus 172 ~~~~~ 176 (238)
.+...
T Consensus 186 g~im~ 190 (493)
T COG0591 186 GLIML 190 (493)
T ss_pred HHHHH
Confidence 54333
No 72
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=91.16 E-value=14 Score=35.13 Aligned_cols=146 Identities=18% Similarity=0.133 Sum_probs=87.6
Q ss_pred cccchhHHHHHHHHhhhhhh-hhhhhhHHhhhhhhhHHHHHHHHHHHHHHH-HHHHHHHhccccCCcccCcHHHHHHHHc
Q 026491 16 EMLDSWFQVGFVLTTGINSA-YVLGYPGTVMVPLGWIAGVVGLIIATIVSL-NANALIAKLHEFGGKRHIRYRDLAGHIY 93 (238)
Q Consensus 16 ~~~~s~~~a~~~l~~~~iG~-GiLalP~a~~~~~G~~~G~i~l~~~~~~~~-yt~~lL~~~~~~~~~~~~sY~~l~~~~~ 93 (238)
.|+-++|...+.+..+.+++ ..++.|-. ..+.|+- +....+. ..+.+ ....++.+-..+.+ ..|.+|.-+.=|
T Consensus 66 Gr~~~~~~~g~si~at~~SaasflG~~G~-~y~~G~~-~~~~~~g-~~~~~~i~~~~~a~~lrr~g--~~T~~d~l~~Rf 140 (549)
T TIGR02711 66 GGNITGFQNGLAIAGDYMSAASFLGISAL-VYTSGYD-GLIYSLG-FLVGWPIILFLIAERLRNLG--RYTFADVASYRL 140 (549)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHH-HHHhChH-HHHHHHH-HHHHHHHHHHHHHHHHHHcC--CccHHHHHHHHc
Confidence 45667787777777776654 77888876 6666763 3332221 11221 12233333222333 368999888878
Q ss_pred Ccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhcCCChhhHHHHHHHHH
Q 026491 94 GRR-AYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVST 172 (238)
Q Consensus 94 G~~-~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~~lpl~~l~~l~~l~~~S~~~~ 172 (238)
|.+ .|.+..+...+..+...+..++-.|..++.++. ++...=+++.++++ +.-...--++...|+-.+=.
T Consensus 141 ~s~~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~g--------i~~~~~iii~~~i~-~~Yt~~GGm~av~~td~iQ~ 211 (549)
T TIGR02711 141 KQRPIRILSACGSLVVVALYLIAQMVGAGKLIELLFG--------LNYHVAVVLVGILM-VMYVLFGGMLATTWVQIIKA 211 (549)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCHHHHHHHHHHHH-HHHHHhhhhHHHHHHHHHHH
Confidence 754 577777777776677777777778877776642 22222244444444 45666778888888887765
Q ss_pred HHH
Q 026491 173 VLS 175 (238)
Q Consensus 173 ~~~ 175 (238)
+..
T Consensus 212 ~im 214 (549)
T TIGR02711 212 VLL 214 (549)
T ss_pred HHH
Confidence 443
No 73
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=90.87 E-value=13 Score=34.33 Aligned_cols=81 Identities=17% Similarity=0.155 Sum_probs=40.1
Q ss_pred chhHHHHHHHHhhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHHHHH----HHHHHHhccccCCcccCcHHHHHHHHcC
Q 026491 19 DSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLN----ANALIAKLHEFGGKRHIRYRDLAGHIYG 94 (238)
Q Consensus 19 ~s~~~a~~~l~~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~~~y----t~~lL~~~~~~~~~~~~sY~~l~~~~~G 94 (238)
-+++.-......++. ++-.+|. .++.|. ..++..++.+++... +.--|....++.| ..-+-+++++|
T Consensus 3 ~~~~~l~~~~~~~v~--~~~~~~~--~a~~G~-~~~~~~~i~~~~~~ip~al~~aEL~~~~P~~G----G~y~~~~~a~G 73 (474)
T TIGR03813 3 LTVVTLAIMNITAVV--SLRGLPA--EAEYGL-SAAFYYLFAAIFFLVPVSLVAAELATAWPEKG----GVFRWVGEAFG 73 (474)
T ss_pred ccHHHHHHHHHHHHH--HhhcchH--HHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHccCCCCC----CceeeHhhhcC
Confidence 344444444444444 4455574 467886 343344444433322 2223333343333 34455678899
Q ss_pred ccchhHHHHHHHHH
Q 026491 95 RRAYALTWGLQYVN 108 (238)
Q Consensus 95 ~~~~~~v~~~~~i~ 108 (238)
|+..........+.
T Consensus 74 ~~~gf~~gw~~w~~ 87 (474)
T TIGR03813 74 ARWGFLAIFMLWAQ 87 (474)
T ss_pred hhHHHHHHHHHHHH
Confidence 98876665544443
No 74
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=90.45 E-value=15 Score=34.27 Aligned_cols=150 Identities=13% Similarity=0.072 Sum_probs=83.9
Q ss_pred cccchhHHHHHHHHhhhhhh-hhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccC---CcccCcHHHHHHH
Q 026491 16 EMLDSWFQVGFVLTTGINSA-YVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFG---GKRHIRYRDLAGH 91 (238)
Q Consensus 16 ~~~~s~~~a~~~l~~~~iG~-GiLalP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~~~~~---~~~~~sY~~l~~~ 91 (238)
.|+-+++...+.+..+.+++ -.++.|-. .-+-|+. +.................+.+-..+. +.+..|-+|.-+.
T Consensus 35 gr~~~~~~~~~s~~At~~s~~~~~G~~g~-~y~~G~~-~~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~T~~e~l~~ 112 (487)
T TIGR02121 35 GRSLGPFVTALSAGASDMSGWLLMGLPGA-LYVTGLS-ELWIAIGLTIGAYINWKFVAPRLRVYTEAAHNSITLPDFFEN 112 (487)
T ss_pred CCcccHHHHHHHHHHHHHhHHHHHhhHHH-HHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCccHHHHHHH
Confidence 55667888888887777665 46778876 5566874 32222222222222233333321211 1224678888888
Q ss_pred HcCccch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhcCCChhhHHHHH
Q 026491 92 IYGRRAY---ALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWL 168 (238)
Q Consensus 92 ~~G~~~~---~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~~lpl~~l~~l~~l~~~S 168 (238)
=||++.| .+..+...+.........+...|..++.+++ .+...-+++.++++ +.-...--++...++.
T Consensus 113 Ryg~~~~~~~~~~ai~~~~~~~~~~~~~l~~~~~~l~~~~g--------i~~~~~iii~~~i~-~~Yt~~GGl~av~~TD 183 (487)
T TIGR02121 113 RFNDKSRLLRIISALIILVFFTIYTSSGLVAGGKLFESTFG--------LDYKTGLLIGALII-VIYTFFGGFLAVSWTD 183 (487)
T ss_pred HhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------ccHHHHHHHHHHHH-HHHHHhhhHHHHHHHH
Confidence 8996543 3344444444445555566667777666542 22233344444444 4666778889988888
Q ss_pred HHHHHHHH
Q 026491 169 GVSTVLST 176 (238)
Q Consensus 169 ~~~~~~~~ 176 (238)
.+=.+..+
T Consensus 184 ~iQ~~i~~ 191 (487)
T TIGR02121 184 FVQGLLMF 191 (487)
T ss_pred HHHHHHHH
Confidence 77754433
No 75
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=89.44 E-value=20 Score=34.11 Aligned_cols=146 Identities=14% Similarity=0.035 Sum_probs=86.9
Q ss_pred cccchhHHHHHHHHhhhhhh-hhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCCcccCcHHHHHHHHcC
Q 026491 16 EMLDSWFQVGFVLTTGINSA-YVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYG 94 (238)
Q Consensus 16 ~~~~s~~~a~~~l~~~~iG~-GiLalP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~~~~~~~~~~sY~~l~~~~~G 94 (238)
.|+-+||...+.+..+.+++ -.++.|-. ..+.|+. +................++.+...+.+ ..|-.|.-+.=||
T Consensus 31 Gr~l~~~~~~~s~~At~~Sa~tflG~~g~-~y~~G~~-~~~~~~g~~~~~~~~~~~~~p~~rr~~--~~T~~e~l~~Rf~ 106 (552)
T TIGR03648 31 GRGVPPVANGMATAADWMSAASFISMAGL-IAFLGYD-GLAYLMGWTGGYVLLALLLAPYLRKFG--KYTVPDFIGDRYY 106 (552)
T ss_pred CCCCchHHHHHHHHHHHHhHHHHHHHHHH-HHHhChH-HHHHHHHHHHHHHHHHHHHHHHHHHCC--CccHHHHHHHHhC
Confidence 55668898888888887755 57778866 5556652 222211111111122334444333333 3566776666688
Q ss_pred cc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhcCCChhhHHHHHHHHHH
Q 026491 95 RR-AYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTV 173 (238)
Q Consensus 95 ~~-~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~~lpl~~l~~l~~l~~~S~~~~~ 173 (238)
++ .|.+..+...+..+......+...+..++.+.. .+...-+++.++++ +.-...--+|...|+-.+=.+
T Consensus 107 s~~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~g--------i~~~~~iii~~~i~-~iYt~~GG~~aV~~TD~iQ~i 177 (552)
T TIGR03648 107 SNTARLVAVICAIFISFTYVAGQMRGVGVVFSRFLE--------VDFETGVFIGMAIV-FFYAVLGGMKGVTWTQVAQYI 177 (552)
T ss_pred CCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCHHHHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHH
Confidence 55 577777777777777777777777777776642 22223244444444 456667888998888877754
Q ss_pred H
Q 026491 174 L 174 (238)
Q Consensus 174 ~ 174 (238)
.
T Consensus 178 i 178 (552)
T TIGR03648 178 V 178 (552)
T ss_pred H
Confidence 3
No 76
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=88.92 E-value=3.6 Score=37.91 Aligned_cols=64 Identities=13% Similarity=0.248 Sum_probs=53.1
Q ss_pred cHHHHHHHHcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHH
Q 026491 84 RYRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFA 155 (238)
Q Consensus 84 sY~~l~~~~~G~~~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~~lpl 155 (238)
--.+++++.+|+.|..+..+...+.|+=++++.+...+|..++.++ ..+.+.|.++++++- ..+
T Consensus 262 lL~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~~-------kisY~~~v~i~~i~S-~~i 325 (427)
T PF05525_consen 262 LLSQIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYFSELFP-------KISYKVWVIIFTIFS-FII 325 (427)
T ss_pred HHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------ccChHHHHHHHHHHH-HHH
Confidence 4677899999999999999999999999999999999999998864 245577887776554 344
No 77
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=83.88 E-value=38 Score=31.75 Aligned_cols=150 Identities=12% Similarity=0.035 Sum_probs=84.9
Q ss_pred cccchhHHHHHHHHhhhhhh-hhhhhhHHhhhhhhhHHHHHHHHHHHHHH-HHHHHHHHh-ccc--cCCcccCcHHHHHH
Q 026491 16 EMLDSWFQVGFVLTTGINSA-YVLGYPGTVMVPLGWIAGVVGLIIATIVS-LNANALIAK-LHE--FGGKRHIRYRDLAG 90 (238)
Q Consensus 16 ~~~~s~~~a~~~l~~~~iG~-GiLalP~a~~~~~G~~~G~i~l~~~~~~~-~yt~~lL~~-~~~--~~~~~~~sY~~l~~ 90 (238)
.|+-++|...+.+..+.+++ -.++.|-. .-+.|+.. .... +...+. .....++.+ ... +...+..|-+|.-+
T Consensus 39 gr~l~~~~~~~s~~At~~Sa~t~iG~~g~-~y~~G~~~-~~~~-~~~~~~~~l~~~~~~~~l~~~~~~~~~~~T~~e~l~ 115 (502)
T PRK15419 39 GRSLGPFVTALSAGASDMSGWLLMGLPGA-VFLSGISE-SWIA-IGLTLGAWINWKLVAGRLRVHTEYNNNALTLPDYFT 115 (502)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHhhHH-HHHcCHHH-HHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCceeHHHHHH
Confidence 55668888888877777766 55778877 55777642 2111 111122 111222221 111 11122457778888
Q ss_pred HHcCccchh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhcCCChhhHHHH
Q 026491 91 HIYGRRAYA---LTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVW 167 (238)
Q Consensus 91 ~~~G~~~~~---~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~~lpl~~l~~l~~l~~~ 167 (238)
+=||++.|. +..+...+..+......+...|..++.++. ++...-+++.++++ +.-..+--++...++
T Consensus 116 ~Ry~~~~~~~~~~~~i~~~~~~~~~~~~ql~~~~~~l~~~~g--------i~~~~~iii~~~iv-~iYt~~GGl~aV~~T 186 (502)
T PRK15419 116 GRFEDKSRILRIISALVILLFFTIYCASGIVAGARLFESTFG--------MSYETALWAGAAAT-ILYTFIGGFLAVSWT 186 (502)
T ss_pred HHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CCHHHHHHHHHHHH-HHHHHhhhHHHHHHH
Confidence 889875443 444444555555555666666777766542 33333344544554 567778899999998
Q ss_pred HHHHHHHHHH
Q 026491 168 LGVSTVLSTI 177 (238)
Q Consensus 168 S~~~~~~~~~ 177 (238)
..+=.+..+.
T Consensus 187 D~iQ~~imi~ 196 (502)
T PRK15419 187 DTVQASLMIF 196 (502)
T ss_pred HHHHHHHHHH
Confidence 8887654433
No 78
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=78.66 E-value=48 Score=29.50 Aligned_cols=110 Identities=16% Similarity=0.189 Sum_probs=65.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHH-HHhccccCCcccCcHHHHHHHHcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026491 47 PLGWIAGVVGLIIATIVSLNANAL-IAKLHEFGGKRHIRYRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALK 125 (238)
Q Consensus 47 ~~G~~~G~i~l~~~~~~~~yt~~l-L~~~~~~~~~~~~sY~~l~~~~~G~~~~~~v~~~~~i~~~g~~v~yli~~~~~l~ 125 (238)
+-|+ ..+-.++.+.+-.|-.+. ..|.-..+|+ +-.|..|+-+||+..++..+...+..+.+..+-++-.+..++
T Consensus 10 ~~Gy--~Llw~lll~~~~~~~~q~~~~R~~~~Tg~---~l~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~g~a~al~ 84 (358)
T PF01566_consen 10 QYGY--SLLWVLLLSNLLKYVFQEMAARLGIVTGK---GLAEGIRERFGRGWAWFLWILIFLANIATQAAEIIGIAIALN 84 (358)
T ss_pred HHCH--HHHHHHHHHHHHHHHHHHHHHHHhhhcCC---ChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 333333344444343333 3333223443 577888888899988888888878777777777777777776
Q ss_pred HHHHHHhcCCCCCCchhhHHHHHHHHHHHHhc--CCChhhHHHHHHH
Q 026491 126 AAFVLFWKDDHTMKLPYFIAIAGFVCALFAIG--IPNLSALGVWLGV 170 (238)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~iii~~~~~~lpl~~--l~~l~~l~~~S~~ 170 (238)
.++ ..+...|.++.++.. +.+.+ .++.|.+-.+..+
T Consensus 85 ll~--------g~~~~~~~~~~~~~~-~~ll~~~~~~y~~~E~~~~~ 122 (358)
T PF01566_consen 85 LLF--------GIPLWIWVLLVAVIA-ILLLWLSSGGYRRLERILKV 122 (358)
T ss_pred hhc--------CCCcHHHHHHHHHHH-HHHHHHHhccchHHHHHHHH
Confidence 553 133355666655554 33434 6777777655444
No 79
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=78.42 E-value=63 Score=30.78 Aligned_cols=88 Identities=19% Similarity=0.133 Sum_probs=42.4
Q ss_pred cCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-CCchhhHHHHHHHHH-HHHhcCCChhhHHHHHHH
Q 026491 93 YGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHT-MKLPYFIAIAGFVCA-LFAIGIPNLSALGVWLGV 170 (238)
Q Consensus 93 ~G~~~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~~~-~~~~~~iii~~~~~~-lpl~~l~~l~~l~~~S~~ 170 (238)
+||...|++.....+.+.-...+=..-.++.+.......+ ++.. .+...|.+..++.+. ..+..+| -|.+++++-+
T Consensus 128 ~~~~~sw~~Gw~~~~g~~~~~aSi~~S~A~~i~~~v~l~n-p~y~~~~~~~~~v~~ai~~v~~lln~~p-~r~l~~I~~~ 205 (550)
T KOG1289|consen 128 YGPFASWVTGWLNYLGQATGVASITYSLAQLILGAVSLTN-PNYEPTNYHQFGVFEAILFVHGLLNSLP-TRVLARINSV 205 (550)
T ss_pred hhhHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhhcC-CCCcccceEeehHHHHHHHHHHHHhcCC-cHHHHHHHHH
Confidence 3444456666666665544444444445555555555444 3322 223333333222221 2333333 2778888888
Q ss_pred HHHHHHHHHHHH
Q 026491 171 STVLSTIYIVIA 182 (238)
Q Consensus 171 ~~~~~~~~~~i~ 182 (238)
++...+...++.
T Consensus 206 ~~~~~ll~~~i~ 217 (550)
T KOG1289|consen 206 SVYLNLLFLVIL 217 (550)
T ss_pred HHHHHHHHHHHH
Confidence 775555444433
No 80
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=77.66 E-value=21 Score=33.05 Aligned_cols=65 Identities=11% Similarity=0.181 Sum_probs=51.3
Q ss_pred HHHHHHHHcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhcC
Q 026491 85 YRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGI 158 (238)
Q Consensus 85 Y~~l~~~~~G~~~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~~lpl~~l 158 (238)
-....++.+|++++.+..+...+.|+=++++-+-..+|.+++.++ .+.+.|.++.+++. .+++.+
T Consensus 267 l~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~~--------isY~~~v~i~~l~S-~~lSn~ 331 (439)
T PRK15433 267 LHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQYVP--------LSYRTLVFILGGFS-MVVSNL 331 (439)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--------CcHHHHHHHHHHHH-HHHHHh
Confidence 345678889999999999999999999999999999998887642 45567777766665 566543
No 81
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=77.26 E-value=60 Score=29.91 Aligned_cols=78 Identities=9% Similarity=0.125 Sum_probs=57.9
Q ss_pred cHHHHHHHHcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhcCCChhh
Q 026491 84 RYRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSA 163 (238)
Q Consensus 84 sY~~l~~~~~G~~~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~~lpl~~l~~l~~ 163 (238)
=-.+..++.||+.++.+...+..+.|+=++++.+..++|..++.++ ..+.+.|..+++++- +..+ .-.+++
T Consensus 264 IL~~~s~~~fG~~G~~lL~~iv~lACLTTaiGLi~a~aefF~~~~p-------~~SY~~~v~if~i~s-flva-n~GL~~ 334 (431)
T COG1114 264 ILSAYSQHLFGSYGSILLGLIVFLACLTTAVGLIVACAEFFSKLVP-------KLSYKTWVIIFTLIS-FLVA-NLGLEQ 334 (431)
T ss_pred HHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------cccHHHHHHHHHHHH-HHHH-HhhHHH
Confidence 3567788999999999999999999999999999999999988865 245567887777655 3332 223444
Q ss_pred HHHHHHH
Q 026491 164 LGVWLGV 170 (238)
Q Consensus 164 l~~~S~~ 170 (238)
+-..|.-
T Consensus 335 Ii~isvP 341 (431)
T COG1114 335 IIKISVP 341 (431)
T ss_pred HHHHHHH
Confidence 4444443
No 82
>TIGR00909 2A0306 amino acid transporter.
Probab=76.37 E-value=59 Score=29.38 Aligned_cols=47 Identities=6% Similarity=-0.205 Sum_probs=39.9
Q ss_pred CcHHHHHHHHcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026491 83 IRYRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFV 129 (238)
Q Consensus 83 ~sY~~l~~~~~G~~~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~ 129 (238)
....++.+...|+++.+++.+...+.+++...+.+...+..+...-+
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~a~ 310 (429)
T TIGR00909 264 APLSLVGYDLGQGIGGLILTAGAVFSIASVMLAGIYGTSRVLFAMSR 310 (429)
T ss_pred cHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 35678888888999998999999999999999999999988887654
No 83
>PRK00701 manganese transport protein MntH; Reviewed
Probab=73.61 E-value=77 Score=29.35 Aligned_cols=45 Identities=18% Similarity=0.146 Sum_probs=34.2
Q ss_pred CcHHHHHHHHcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026491 83 IRYRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAA 127 (238)
Q Consensus 83 ~sY~~l~~~~~G~~~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~ 127 (238)
++-.|+.|+-|||+..++..+...+...++...-++-.+..++.+
T Consensus 94 ~~l~~~ir~~~~~~~~~~~~~~~~l~~~~~~~~e~~G~a~al~ll 138 (439)
T PRK00701 94 RDLAQACRDRYPRPVVWFLWIQAELAIMATDLAEVIGAAIALKLL 138 (439)
T ss_pred CCHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368999999999998888777777777777777666666666544
No 84
>PHA02764 hypothetical protein; Provisional
Probab=72.55 E-value=19 Score=32.16 Aligned_cols=79 Identities=13% Similarity=0.007 Sum_probs=42.5
Q ss_pred ccchhHHHHH-HHHhhhhhhhhhhhhH--------HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCCcccCcHHH
Q 026491 17 MLDSWFQVGF-VLTTGINSAYVLGYPG--------TVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRD 87 (238)
Q Consensus 17 ~~~s~~~a~~-~l~~~~iG~GiLalP~--------a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~~~~~~~~~~sY~~ 87 (238)
|+.+.+++.+ |+.....|.++ +.|+ + ..-.+|..|.+ .++....+.-.|....++.|- .|.-
T Consensus 12 REvs~lDAF~~Nl~~m~~Gi~I-s~~~l~a~l~pG~-nlLLAWLLGGL----lALPgAL~YAELGSAmPrAGG---dYVY 82 (399)
T PHA02764 12 KSFNILDIFSINLLYMGILSGI-SYPLFVSSLLKNV-NLLFAILIGAV----FEIPLLLMYYKLTTKFPLNGG---DYAY 82 (399)
T ss_pred eeccHHHHHHHHHHhhccchhH-HHHHHHhhcCCch-hHHHHHHHHHH----HHHHHHHHHHHHHhhCCCCCc---eEEE
Confidence 4557777777 88888888765 4343 2 22233433332 333334445556665666653 2333
Q ss_pred HHHHHcCccchhHHHHHH
Q 026491 88 LAGHIYGRRAYALTWGLQ 105 (238)
Q Consensus 88 l~~~~~G~~~~~~v~~~~ 105 (238)
.+++|||+...+..+..
T Consensus 83 -ISRAFGP~~GFLvG~a~ 99 (399)
T PHA02764 83 -IRTAFSSKFYTIFGISL 99 (399)
T ss_pred -hHHhhCccHHHHHHHHH
Confidence 34568887665544443
No 85
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=54.29 E-value=1.6e+02 Score=26.35 Aligned_cols=47 Identities=19% Similarity=0.073 Sum_probs=41.3
Q ss_pred cHHHHHHHHcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026491 84 RYRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVL 130 (238)
Q Consensus 84 sY~~l~~~~~G~~~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~ 130 (238)
....+.+...|++..+++.+...+.++++..+.+...+..+..+.++
T Consensus 259 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a~d 305 (426)
T PF13520_consen 259 PFAVLASAVGGSWLAIIVSIAAILSLFGSINAFIFGASRLLYAMARD 305 (426)
T ss_dssp HHHHHHHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccchhhccccccccccccccccccccccccchhhcchhhcccccccc
Confidence 36788888889999999999999999999999999999988887763
No 86
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=52.47 E-value=1.8e+02 Score=26.42 Aligned_cols=99 Identities=12% Similarity=0.142 Sum_probs=56.1
Q ss_pred HHHHHHHhhhhhhhhhhhhHHhhhhhhhHH--HHHHHHHHHHHHHHHHHHHH-hccccCCcccCcHHHHHHHHcCccchh
Q 026491 23 QVGFVLTTGINSAYVLGYPGTVMVPLGWIA--GVVGLIIATIVSLNANALIA-KLHEFGGKRHIRYRDLAGHIYGRRAYA 99 (238)
Q Consensus 23 ~a~~~l~~~~iG~GiLalP~a~~~~~G~~~--G~i~l~~~~~~~~yt~~lL~-~~~~~~~~~~~sY~~l~~~~~G~~~~~ 99 (238)
+..+-...+.+|.|-++.- .+.|=-. ..+-.++.+.+..+-.+.+. |.-..+| ++-.|+.|+.++|+.++
T Consensus 8 GPg~lva~a~idPG~i~t~----~~aGa~fGy~LLW~llls~~~~~~~Q~~aaRlg~vTg---~~l~~~~r~~~~~~~~~ 80 (390)
T TIGR01197 8 GPGFLMSIAYIDPGNYSTD----LQAGAAAGYKLLWVLLLSNIMALLLQRLCARLGVVTG---LDLAEVCREHYPKVPRI 80 (390)
T ss_pred ChHHHHHHHhcCchHHHHH----HHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHheeecC---CCHHHHHHHHCCCchHH
Confidence 3445556677788777733 2333333 33333444444444444433 2222334 36899999999998887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026491 100 LTWGLQYVNLFMINTGYIILAGQALKAAF 128 (238)
Q Consensus 100 ~v~~~~~i~~~g~~v~yli~~~~~l~~~~ 128 (238)
...+...+..+++...-+.-.+..++.++
T Consensus 81 ~~~~~~~l~ii~~~~~e~~G~a~al~ll~ 109 (390)
T TIGR01197 81 TLWILAELAIIATDMAEVIGTAIALNLLS 109 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 76666555556665555555555555443
No 87
>PRK10484 putative transporter; Provisional
Probab=50.88 E-value=2.2e+02 Score=26.82 Aligned_cols=156 Identities=12% Similarity=-0.030 Sum_probs=79.3
Q ss_pred cccchhHHHHHHHHhhhhhh-hhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCCcccCcHHHHHHHHcC
Q 026491 16 EMLDSWFQVGFVLTTGINSA-YVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYG 94 (238)
Q Consensus 16 ~~~~s~~~a~~~l~~~~iG~-GiLalP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~~~~~~~~~~sY~~l~~~~~G 94 (238)
.|+-++|-..+.+..+.+++ -.++.|-. .-+-|+.... .....+.......+++.+-..+. +..|-+|.-+.-||
T Consensus 37 gR~l~~~~~~~sl~AT~~Sa~tflG~~g~-~y~~G~~~~~-~~~~~~~~~~~~~~~~~p~~~r~--~~~T~~e~l~~Ryg 112 (523)
T PRK10484 37 GRSLTGPVIAGSLLLTNLSTEQLVGLNGQ-AYASGMSVMA-WEVTAAIALIILALIFLPRYLKS--GITTIPDFLEERYD 112 (523)
T ss_pred CCCCchHHHHHHHHHHHhhHHHHhcchHH-HHHhCHHHHH-HHHHHHHHHHHHHHHHHHHHHhc--CCccHHHHHHHhcC
Confidence 56668888888877776655 56777766 4445653211 11111111112233333322222 35688888888899
Q ss_pred ccchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCCCCch--hhH--HHHHHHHHHHHhcCCChhhHHHHHH
Q 026491 95 RRAYALTWGLQYVNLFMI-NTGYIILAGQALKAAFVLFWKDDHTMKLP--YFI--AIAGFVCALFAIGIPNLSALGVWLG 169 (238)
Q Consensus 95 ~~~~~~v~~~~~i~~~g~-~v~yli~~~~~l~~~~~~~~~~~~~~~~~--~~i--ii~~~~~~lpl~~l~~l~~l~~~S~ 169 (238)
++.+.+......+..... ....+...+..+++++.... -...+.. .++ ++.+++. +.-...--++...++..
T Consensus 113 ~~~~~~~~~~~~i~~~~~~~~~~l~~g~~~l~~i~~~~~--~~gi~~~~~~~~~~~~~~~i~-~~Yt~~GGl~aV~~TD~ 189 (523)
T PRK10484 113 KTTRRIVSILFLIGYVVSFLPIVLYSGALALNSLFHVSE--LLGISYGAAIWLLVWLIGIIG-AIYAVFGGLKAVAVSDT 189 (523)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh--hcCCcHHHHHHHHHHHHHHHH-hhhhhhhhHHHHHHHHH
Confidence 988776665544443333 22333334444554432100 0012211 121 1122233 45566788999999888
Q ss_pred HHHHHHHHH
Q 026491 170 VSTVLSTIY 178 (238)
Q Consensus 170 ~~~~~~~~~ 178 (238)
+=.+..+..
T Consensus 190 iQ~vim~i~ 198 (523)
T PRK10484 190 INGIGLLIG 198 (523)
T ss_pred HHHHHHHHH
Confidence 876544333
No 88
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=47.89 E-value=2.3e+02 Score=26.12 Aligned_cols=45 Identities=9% Similarity=-0.019 Sum_probs=39.6
Q ss_pred HHHHHHHHcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026491 85 YRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFV 129 (238)
Q Consensus 85 Y~~l~~~~~G~~~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~ 129 (238)
..++.+..+|+++..++.+...+..+|+..+++...+..+...-+
T Consensus 266 ~~~~~~~~~g~~~~~~i~~~~~is~~~~~~~~~~~~sR~~~a~ar 310 (468)
T TIGR03810 266 MAYVLEHMVGTWGAVLINIGLIISILGAWLSWTLLPAEIPLLMAK 310 (468)
T ss_pred HHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 677888889999999999999999999999999999998877654
No 89
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism]
Probab=40.59 E-value=47 Score=32.00 Aligned_cols=108 Identities=13% Similarity=0.021 Sum_probs=67.5
Q ss_pred hhHHHHH-----HHHhhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCCcc-cCcHHHHHHHHc
Q 026491 20 SWFQVGF-----VLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKR-HIRYRDLAGHIY 93 (238)
Q Consensus 20 s~~~a~~-----~l~~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~~~~~~~~-~~sY~~l~~~~~ 93 (238)
+||+.+| |+..-+ =-|=+++- ..|+|...|++++.+...++.-|..=-....++...+ --.|-=++ +..
T Consensus 31 g~~~gv~~~cmlni~gv~---lflrl~wi-vgqagi~~~~~ii~~~~~vt~it~lSa~~I~t~~~vk~Gg~yflis-~sl 105 (643)
T KOG2083|consen 31 GWWDGVFVRCMLNIFGVI---LFLRLGWI-VGQAGIGNSVLIIGLTTVVTLITVLSAIAIVTRGQVKSGGVYFLIS-RSL 105 (643)
T ss_pred eeeehhhhhhhHHHHHHH---Hhhhhhhe-eecchhhhhHHHHHHHHHHHHHHHHhHheeeecceeccCcEEEEEE-ecc
Confidence 5666655 333222 24667888 9999999999988888888877665433322211000 01244343 346
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026491 94 GRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFW 132 (238)
Q Consensus 94 G~~~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~ 132 (238)
||.-.--+.+.....+.=.+..|++-.++++.++++.+.
T Consensus 106 g~efggsigiIy~f~~aVa~am~~vgfaEsv~~l~~~~s 144 (643)
T KOG2083|consen 106 GPEFGGSIGIIYAFANAVATAMYVVGFAESVAHLFETES 144 (643)
T ss_pred cccccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhcc
Confidence 676444445555555555677799999999999998653
No 90
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=39.96 E-value=3.3e+02 Score=25.69 Aligned_cols=92 Identities=12% Similarity=0.069 Sum_probs=44.5
Q ss_pred HHHHHHHHcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHH-HHHHhcCCChhh
Q 026491 85 YRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVC-ALFAIGIPNLSA 163 (238)
Q Consensus 85 Y~~l~~~~~G~~~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~-~lpl~~l~~l~~ 163 (238)
|+-++++.-|+.+ .++|+.-.+..++....=+=+....+..-.+...+ -+.+...++++..+.. +.-.+-..-+|+
T Consensus 164 ~pl~g~~~~g~~g-~~ID~l~i~a~~~GvatslGlg~~qi~~gl~~~~G--i~~~~~~~~~ii~~~~~i~~~S~~~Gl~k 240 (485)
T PF02028_consen 164 YPLLGDRINGPLG-KIIDILAIFATIFGVATSLGLGVPQISAGLSSLFG--IPNTFGLQIIIIIVITVIFTISAVSGLDK 240 (485)
T ss_dssp HHHHHHHHHSHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT--SSSTHHHHHHHHHHHHHHHHHHHHTTTHH
T ss_pred hhhcCCcccCcch-hhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHcC--CCCchHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 6667776666654 56666666555444333333444444444433321 1122222222222111 134555566655
Q ss_pred -HHHHHHHHHHHHHHHH
Q 026491 164 -LGVWLGVSTVLSTIYI 179 (238)
Q Consensus 164 -l~~~S~~~~~~~~~~~ 179 (238)
++++|-+.....+...
T Consensus 241 GIk~LS~~n~~l~~~ll 257 (485)
T PF02028_consen 241 GIKRLSNINVYLAFALL 257 (485)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 7888887765444433
No 91
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=39.11 E-value=1.9e+02 Score=26.70 Aligned_cols=86 Identities=12% Similarity=0.068 Sum_probs=54.1
Q ss_pred HHHcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhcCCChhhHHHHHH
Q 026491 90 GHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLG 169 (238)
Q Consensus 90 ~~~~G~~~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~~lpl~~l~~l~~l~~~S~ 169 (238)
+..+|+++.+++.+++++.-+-+.+++....-++++.+++ + ......|-+++.+ + +++.-+-+++.+.-++=
T Consensus 300 ~~~~g~~g~~~v~i~l~lFafTTilg~~~yge~~~~yl~~-----~-~~~~~~~ri~~i~-~-~~~G~~~~~~~vW~~~D 371 (416)
T PF01235_consen 300 STVLGSWGPYFVAIALFLFAFTTILGWYYYGEKCAEYLFG-----G-KKAIWIYRILFIA-M-VFIGAVIDLDLVWDLAD 371 (416)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----C-ceEEEeeeehhhh-h-hhhhhcccchhHHHHHH
Confidence 3457889999999999999999999999999999998862 1 1111111112111 1 23334456666666666
Q ss_pred HHHHHHHHHHHHHH
Q 026491 170 VSTVLSTIYIVIAI 183 (238)
Q Consensus 170 ~~~~~~~~~~~i~~ 183 (238)
+.+.......++.+
T Consensus 372 i~~~lmai~Nlial 385 (416)
T PF01235_consen 372 IANGLMAIPNLIAL 385 (416)
T ss_pred HHHHHHHHHHHHHH
Confidence 66655555555544
No 92
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=38.70 E-value=2.7e+02 Score=28.13 Aligned_cols=138 Identities=14% Similarity=0.106 Sum_probs=77.0
Q ss_pred hhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCCc--ccCcHHHHHHHHcCccchhHHHHHHHHHHHHHHHHH
Q 026491 39 GYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGK--RHIRYRDLAGHIYGRRAYALTWGLQYVNLFMINTGY 116 (238)
Q Consensus 39 alP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~~~~~~~--~~~sY~~l~~~~~G~~~~~~v~~~~~i~~~g~~v~y 116 (238)
=|-+- +--+|...|.+++.+++.-+..|..-+..... +|. .--+|-=+.|. +||...-.+.++.++..--....|
T Consensus 136 RLtWv-VG~AGv~q~fllv~iCC~cTmLTaISmSAIAT-NGVVpaGGsYfmISRs-LGPEFGgAVGlcFYLgtT~AaaMY 212 (1075)
T KOG2082|consen 136 RLTWV-VGMAGVGQGFLLVFICCLCTMLTAISMSAIAT-NGVVPAGGSYFMISRS-LGPEFGGAVGLCFYLGTTVAAAMY 212 (1075)
T ss_pred HHHHH-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccCCCeeEEEecc-cCccccceeeehhhhhhHHHHHHH
Confidence 34555 66677777888888887777777666655422 111 01257666654 788766666777666665566667
Q ss_pred HHHHHHHHH-HHHHH---HhcCC-----C--CCCchhhHHHHHHHHH-HHHhcCCChhhHHHHHHHHHHHHHHHH
Q 026491 117 IILAGQALK-AAFVL---FWKDD-----H--TMKLPYFIAIAGFVCA-LFAIGIPNLSALGVWLGVSTVLSTIYI 179 (238)
Q Consensus 117 li~~~~~l~-~~~~~---~~~~~-----~--~~~~~~~iii~~~~~~-lpl~~l~~l~~l~~~S~~~~~~~~~~~ 179 (238)
++-.-+.+- -+++. +..++ . ..+.|.|-.++.+++. +...-.|-.+.++.+++.+++.++..+
T Consensus 213 IlGaVEi~L~Yi~P~aaIf~~~~a~~~~~am~nnlRvYGT~~Li~m~lIVf~GVK~Vnk~A~vfL~CVILSIlai 287 (1075)
T KOG2082|consen 213 ILGAVEIFLTYIFPAAAIFGAEDAHDEAAAMLNNLRVYGTVFLILMALIVFVGVKFVNKFAPVFLACVILSILAI 287 (1075)
T ss_pred HHhHHHHHHHHHccHhhhcCccccccchhhhhcceehHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 776555433 24442 11111 1 1245555554444431 122234566677777777766665443
No 93
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=38.51 E-value=3.1e+02 Score=24.96 Aligned_cols=46 Identities=9% Similarity=-0.073 Sum_probs=31.6
Q ss_pred cHHHHHHH--HcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026491 84 RYRDLAGH--IYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFV 129 (238)
Q Consensus 84 sY~~l~~~--~~G~~~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~ 129 (238)
+..++.+. .+|+++..++.+...+..++...+++...+..+...-+
T Consensus 265 p~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~a~ar 312 (445)
T PRK11357 265 PISDALTWIPALGSTAGIFVAITAMIVILGSLSSCVMYQPRLEYAMAK 312 (445)
T ss_pred hHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHh
Confidence 56677765 37887766676666677778877777776666665543
No 94
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=38.14 E-value=3.1e+02 Score=24.94 Aligned_cols=46 Identities=28% Similarity=0.196 Sum_probs=34.9
Q ss_pred CcHHHHHHHHcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026491 83 IRYRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAF 128 (238)
Q Consensus 83 ~sY~~l~~~~~G~~~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~ 128 (238)
.++.|+.+..+|+++..++.+...+..+++...++...+..+...-
T Consensus 260 ~p~~~~~~~~~g~~~~~~v~~~~~~s~~~~~~~~~~~~sr~~~a~a 305 (445)
T PRK10644 260 SPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAA 305 (445)
T ss_pred ChHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999988877777777777777777766666655543
No 95
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=37.14 E-value=3.4e+02 Score=25.06 Aligned_cols=104 Identities=13% Similarity=0.099 Sum_probs=66.8
Q ss_pred hhHHHHHHHHhhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhc-cccCCcccCcHHHHHHHHcCccch
Q 026491 20 SWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKL-HEFGGKRHIRYRDLAGHIYGRRAY 98 (238)
Q Consensus 20 s~~~a~~~l~~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~-~~~~~~~~~sY~~l~~~~~G~~~~ 98 (238)
...+..+-...+-+|.|=.+---.+=++-|+- .+..++.+.+-.|-.+.+..- -..+|+ +.+|..|+-|+|+..
T Consensus 18 ~~lGPg~lva~a~iDpg~~at~~~~Ga~~Gy~--ll~vills~l~~~~~Q~~~arLgivTG~---~laq~ir~~y~~~~~ 92 (416)
T COG1914 18 ALLGPGFLVAVAYVDPGNIATSAQAGAQYGYS--LLWVILLSNLMAYILQELSARLGIVTGK---GLAEAIRERYLPGLG 92 (416)
T ss_pred HhhCcHHHHHHhccCchhHHhhhhhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhCC---cHHHHHHHHccchHH
Confidence 45556666666777766665444324556653 333333333333333333221 112343 578888888999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026491 99 ALTWGLQYVNLFMINTGYIILAGQALKAAF 128 (238)
Q Consensus 99 ~~v~~~~~i~~~g~~v~yli~~~~~l~~~~ 128 (238)
++..+...+.-..++++-.+-.+-.++-++
T Consensus 93 ~~~~~~~~i~~~at~iae~~G~aial~ll~ 122 (416)
T COG1914 93 ILLWILAEIAGIATDIAEVAGIAIALNLLF 122 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999889999999999999988888775
No 96
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=37.03 E-value=3.5e+02 Score=25.25 Aligned_cols=162 Identities=14% Similarity=0.043 Sum_probs=79.4
Q ss_pred cccccchhHHHHHHHHhhhhhhh-hhhhhHHhhhhhhhHHHHHH---HHHHHHHHHHHHHHHHhccccCCcccCcHH---
Q 026491 14 HLEMLDSWFQVGFVLTTGINSAY-VLGYPGTVMVPLGWIAGVVG---LIIATIVSLNANALIAKLHEFGGKRHIRYR--- 86 (238)
Q Consensus 14 ~~~~~~s~~~a~~~l~~~~iG~G-iLalP~a~~~~~G~~~G~i~---l~~~~~~~~yt~~lL~~~~~~~~~~~~sY~--- 86 (238)
++++.-|-+||...-+.+.+|+| +-+..-| .+..|- ..++= ..+.+..+-|.--.|..-+++.++ .-.|+
T Consensus 58 ~~~~~vS~FqAl~~sla~~VGtGNIaGVAtA-I~~GGP-GAvFWMWi~Al~Gmat~f~E~~La~~Yr~kd~-~G~~~GGP 134 (452)
T COG1115 58 AGKGGVSSFQALMTSLAARVGTGNIAGVATA-IALGGP-GAVFWMWIVALFGMATKFAESTLAQKYRVKDK-DGEYRGGP 134 (452)
T ss_pred CCCCCcChHHHHHHHHHhccCcchHHHHHHH-HHcCCC-ccHHHHHHHHHHHHHHHHHHHHHHhheeEeCC-CCCCcCCh
Confidence 34444589999999999999998 4566767 777773 12222 233344555655566655432111 11121
Q ss_pred -HHHHHHcCc-cchhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhcCCChh
Q 026491 87 -DLAGHIYGR-RAYALTWGLQYVNLFM--INTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLS 162 (238)
Q Consensus 87 -~l~~~~~G~-~~~~~v~~~~~i~~~g--~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~~lpl~~l~~l~ 162 (238)
--.++-+|. |...+.. +..+..+| ......=.+++.++.-+ ..+. ...-+...++ .-+....-+|
T Consensus 135 ~yYi~kGl~~r~l~v~FA-~~li~afg~i~n~vQ~NsIa~a~~~af--------~~~~-~~~gi~la~l-~~~VI~GGi~ 203 (452)
T COG1115 135 AYYIEKGLGMRWLAVLFA-FALIAAFGFIGNGVQSNSIASALANAF--------GIPP-LVTGIVLALL-VALVIFGGIK 203 (452)
T ss_pred HHHHHhhcCCcHHHHHHH-HHHHHHHHhhcchhhHHHHHHHHHHhc--------CCcH-HHHHHHHHHH-HHHHHHcchH
Confidence 112233442 2233333 22222333 22333333333333221 1221 2122222222 4555678888
Q ss_pred hHHHHHHHHH-HHHHHHHHHHHHHHhhc
Q 026491 163 ALGVWLGVST-VLSTIYIVIAIWLSVRD 189 (238)
Q Consensus 163 ~l~~~S~~~~-~~~~~~~~i~~~~~i~~ 189 (238)
+++.++-.-+ ...+.|+...+++.+.+
T Consensus 204 rIa~v~~~vVPfMA~~Yi~~~~~Ii~~n 231 (452)
T COG1115 204 RIAKVSSKVVPFMAILYVLVALVIIVLN 231 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 8887776655 56667776655544443
No 97
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=36.82 E-value=3.4e+02 Score=25.03 Aligned_cols=37 Identities=19% Similarity=-0.060 Sum_probs=28.5
Q ss_pred CccccccchhHHHHHHHHhhhhhhh-hhhhhHHhhhhhh
Q 026491 12 FFHLEMLDSWFQVGFVLTTGINSAY-VLGYPGTVMVPLG 49 (238)
Q Consensus 12 ~~~~~~~~s~~~a~~~l~~~~iG~G-iLalP~a~~~~~G 49 (238)
+.+++++-|-+||...-+.+.+|+| |.+..-| .+-.|
T Consensus 12 ~~~~~g~iS~fqA~~~ala~~vG~GNI~GVa~A-I~~GG 49 (416)
T PF01235_consen 12 KKEEEGGISPFQALCTALAGTVGTGNIAGVATA-IAIGG 49 (416)
T ss_pred CCCCCCCcChHHHHHHHHHhccCcchHHHHHHH-HHhhc
Confidence 3344556699999999999999997 5667777 77766
No 98
>PRK11387 S-methylmethionine transporter; Provisional
Probab=36.55 E-value=3.4e+02 Score=24.95 Aligned_cols=48 Identities=6% Similarity=-0.112 Sum_probs=39.9
Q ss_pred cCcHHHHHHHHcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026491 82 HIRYRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFV 129 (238)
Q Consensus 82 ~~sY~~l~~~~~G~~~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~ 129 (238)
..++.++.+...||++..++.+...+..+++..+.+...+..+..+-+
T Consensus 274 ~~p~~~~~~~~g~~~~~~ii~~~~~~s~~~~~~~~~~~~sR~l~a~ar 321 (471)
T PRK11387 274 KSPFVLVFEKVGIPYAADIFNFVILTAILSAANSGLYASGRMLWSLSN 321 (471)
T ss_pred CChHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 357899999988899988888888888999988888888887776654
No 99
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=34.95 E-value=3.5e+02 Score=24.55 Aligned_cols=73 Identities=15% Similarity=0.133 Sum_probs=42.4
Q ss_pred HHHhhhhhhhhhhhhHHhhhhhh--hHHHHHHHHHHHHHHHHHHHHHHhccccCCcccCcHHHHHHHHcCccchhHHHHH
Q 026491 27 VLTTGINSAYVLGYPGTVMVPLG--WIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYGRRAYALTWGL 104 (238)
Q Consensus 27 ~l~~~~iG~GiLalP~a~~~~~G--~~~G~i~l~~~~~~~~yt~~lL~~~~~~~~~~~~sY~~l~~~~~G~~~~~~v~~~ 104 (238)
-+..-..|+|.|=.|..+-.++| |..+.+..++.++..-.-..+ ...+.| -+|+++.++ +||+...+..+.
T Consensus 3 ~lFamffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpllgl~---av~~~g---G~~~~l~~~-~g~~f~~lf~~~ 75 (378)
T TIGR00796 3 MLFALFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPLLGLI---ALALVG---GGYDSLSAR-IGKVFGILFTVI 75 (378)
T ss_pred HHHHHHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHh---eeeecC---CCHHHHHHH-hChHHHHHHHHH
Confidence 45667899999999986344443 444454444444443333222 122332 369999977 778876555444
Q ss_pred HH
Q 026491 105 QY 106 (238)
Q Consensus 105 ~~ 106 (238)
+.
T Consensus 76 ~~ 77 (378)
T TIGR00796 76 LY 77 (378)
T ss_pred HH
Confidence 44
No 100
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]
Probab=31.54 E-value=4.7e+02 Score=25.04 Aligned_cols=32 Identities=28% Similarity=0.183 Sum_probs=18.9
Q ss_pred cHHHHHHHHcCccchhHHHHHHHHHHHHHHHH
Q 026491 84 RYRDLAGHIYGRRAYALTWGLQYVNLFMINTG 115 (238)
Q Consensus 84 sY~~l~~~~~G~~~~~~v~~~~~i~~~g~~v~ 115 (238)
=|+-++++.-|+.|+.+=-+.++.+.+|..+.
T Consensus 176 l~Pllg~~~~G~~G~~IDi~aiiaTl~GiATs 207 (537)
T COG1292 176 LYPLLGERIKGPIGHAVDILAIIATLFGIATS 207 (537)
T ss_pred hhhhhcccccCccchhhHHHHHHHHHHHHHHH
Confidence 37788888778887644333344445555443
No 101
>PRK11462 putative transporter; Provisional
Probab=31.50 E-value=4.1e+02 Score=24.32 Aligned_cols=14 Identities=14% Similarity=0.195 Sum_probs=9.3
Q ss_pred cHHHHHHHHcCccc
Q 026491 84 RYRDLAGHIYGRRA 97 (238)
Q Consensus 84 sY~~l~~~~~G~~~ 97 (238)
+..+.-+..+..+.
T Consensus 216 ~~~~~l~~~~~Nk~ 229 (460)
T PRK11462 216 SMREDLRDIWQNDQ 229 (460)
T ss_pred CHHHHHHHHhCChH
Confidence 46776667777654
No 102
>cd02431 Ferritin_CCC1_C CCC1-related domain of ferritin. Ferritin_CCC1_like_C: The proteins of this family contain two domains. This is the C-terminal domain that is closely related to the CCC1, a vacuole transmembrane protein functioning as an iron and manganese transporter. The N-terminal domain is similar to ferritin-like diiron-carboxylate proteins, which are involved in a variety of iron ion related functions, such as iron storage and regulation, mono-oxygenation, and reactive radical production. This family may be unique to certain bacteria and archaea.
Probab=31.22 E-value=1.1e+02 Score=23.95 Aligned_cols=43 Identities=9% Similarity=-0.042 Sum_probs=32.3
Q ss_pred cccccCCCccccccchhHHHHHHHHhhhhhhhhhhhhHHhhhhh
Q 026491 5 CYVSSSYFFHLEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPL 48 (238)
Q Consensus 5 ~~~~~~~~~~~~~~~s~~~a~~~l~~~~iG~GiLalP~a~~~~~ 48 (238)
.|++++.|.+.+++.-+..+..+-..-.+|.=+.-+|+- +...
T Consensus 51 ~YlS~kse~d~~~~~p~~~al~s~~sf~~g~~iPllp~~-~~~~ 93 (149)
T cd02431 51 AYLSTKSESGVKESNPVKSALYTGIAYIIGVVIPILPYL-LLSS 93 (149)
T ss_pred HHHHHhhHHhHHhcchHHHHHHHHHHHHHHHHHHHHHHH-Hccc
Confidence 478887776666555677777788888899988999987 6543
No 103
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=25.01 E-value=6e+02 Score=24.11 Aligned_cols=90 Identities=9% Similarity=0.082 Sum_probs=44.6
Q ss_pred cCcHHHHHHHHcCccchhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhcC----CC-----CCCch---hhHHH
Q 026491 82 HIRYRDLAGHIYGRRAYALTWGLQYV---NLFMINTGYIILAGQALKAAFVLFWKD----DH-----TMKLP---YFIAI 146 (238)
Q Consensus 82 ~~sY~~l~~~~~G~~~~~~v~~~~~i---~~~g~~v~yli~~~~~l~~~~~~~~~~----~~-----~~~~~---~~iii 146 (238)
..+|+.+.|..||-++..+-.+.-.+ .-+|+ ..-..|..++.+.....+. ++ .+..- .|++.
T Consensus 102 gIpFpv~~RaSFGi~Ga~~p~l~R~i~A~~WyGv---qty~Gg~av~llL~~i~~~~~~~~~~~~~lg~tt~~~i~F~if 178 (497)
T COG1953 102 GIPFPVLSRASFGIYGANFPALIRAIVAIVWYGV---QTYAGGLAVNLLLGSIFPSLLIPNTLSPLLGLTTLELICFFIF 178 (497)
T ss_pred CCCchHHHHHHHhhhhhhHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHhccccccCCccccccCCcHHHHHHHHHH
Confidence 46899999999998874322222221 12333 3334455554444433221 21 11222 22333
Q ss_pred HHHHHHHHHhcCCChhhHHHHHHHHHHHHHH
Q 026491 147 AGFVCALFAIGIPNLSALGVWLGVSTVLSTI 177 (238)
Q Consensus 147 ~~~~~~lpl~~l~~l~~l~~~S~~~~~~~~~ 177 (238)
+.+ . .+...+.+++++++-.++......
T Consensus 179 W~l-~--~l~~~~g~~~Ir~~~~~a~p~~~~ 206 (497)
T COG1953 179 WVL-Q--LLVLFKGMESIRKFETWAGPLVYI 206 (497)
T ss_pred HHH-H--HHHHhcCHHHHHHHHHHhchHHHH
Confidence 322 2 233556788888877777544333
No 104
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=24.97 E-value=5.6e+02 Score=23.75 Aligned_cols=29 Identities=7% Similarity=-0.264 Sum_probs=15.7
Q ss_pred cCccchhHHHHHHHHHHHHHHHHHHHHHH
Q 026491 93 YGRRAYALTWGLQYVNLFMINTGYIILAG 121 (238)
Q Consensus 93 ~G~~~~~~v~~~~~i~~~g~~v~yli~~~ 121 (238)
+|++...++.+...+..++.....+...+
T Consensus 312 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (496)
T PRK15238 312 LGVWFARITGLSMFLAYTGAFFTLSYSPL 340 (496)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 44555445556666666666555544333
No 105
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=22.51 E-value=6.6e+02 Score=23.72 Aligned_cols=85 Identities=11% Similarity=-0.153 Sum_probs=48.6
Q ss_pred HHHHHHHHcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------CCCCCchhhHHHHHHHHHHHHhc
Q 026491 85 YRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKD-------DHTMKLPYFIAIAGFVCALFAIG 157 (238)
Q Consensus 85 Y~~l~~~~~G~~~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~~~-------~~~~~~~~~iii~~~~~~lpl~~ 157 (238)
-.|.+++.+|.+. |.+.+...+.++|..-+.+...+..+....+.-+-| ......+. -+++...+.+.+++
T Consensus 275 av~Fa~~~~G~~~-~~ip~~ValS~~G~~n~~ifs~SR~~~~~areG~LP~~~s~i~~~~~TP~~-allf~~~~~i~~~~ 352 (479)
T KOG1287|consen 275 AVTFADRILGVFA-WAIPFSVALSLIGSLNSVIFSSSRLFYAGAREGHLPAFFSMISVRRFTPRP-ALLFSGLLSIVLSL 352 (479)
T ss_pred HHHHHHHhccchH-HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHccCccHHHHhhcCCCCCChH-HHHHHHHHHHHHHH
Confidence 4578889999998 889999999999976666555555554433311111 11112222 33333333356666
Q ss_pred CCChhhH-HHHHHHH
Q 026491 158 IPNLSAL-GVWLGVS 171 (238)
Q Consensus 158 l~~l~~l-~~~S~~~ 171 (238)
..|+.+| .+.|+..
T Consensus 353 ~~d~~~LIny~sf~~ 367 (479)
T KOG1287|consen 353 IGDFDQLINYVSFAY 367 (479)
T ss_pred HhhHHHHHHHHHHHH
Confidence 7766665 4555444
No 106
>PRK10249 phenylalanine transporter; Provisional
Probab=20.89 E-value=6.5e+02 Score=23.04 Aligned_cols=46 Identities=4% Similarity=-0.123 Sum_probs=35.9
Q ss_pred CcHHHHHHHHcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026491 83 IRYRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAF 128 (238)
Q Consensus 83 ~sY~~l~~~~~G~~~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~ 128 (238)
.++.++.+...+|++..++.+...+..++...+.+...+..+...-
T Consensus 278 ~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~sR~l~a~a 323 (458)
T PRK10249 278 SPFVMIFHNLDSNVVASALNFVILVASLSVYNSGVYSNSRMLFGLS 323 (458)
T ss_pred CcHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5788888888888888888888778888887777777777666554
No 107
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=20.08 E-value=6.1e+02 Score=22.35 Aligned_cols=44 Identities=9% Similarity=-0.127 Sum_probs=24.5
Q ss_pred HHHHHHcCcc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026491 87 DLAGHIYGRR-AYALTWGLQYVNLFMINTGYIILAGQALKAAFVL 130 (238)
Q Consensus 87 ~l~~~~~G~~-~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~ 130 (238)
+..+..+|.+ .+.++.++-.+....+..+..+-..|.+++.++.
T Consensus 257 ~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~~~~~ 301 (381)
T TIGR00837 257 NALQGVLKSSAIELALELFSNFALASSFLGVTLGLFDYLADLFKF 301 (381)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3444445433 4555555555555555555555556887777654
Done!