Query 026491
Match_columns 238
No_of_seqs 125 out of 1263
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 14:49:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026491.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026491hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 99.1 3.9E-09 1.3E-13 94.8 16.8 215 14-237 5-220 (445)
2 3gia_A Uncharacterized protein 98.7 2E-06 6.9E-11 77.0 19.7 210 15-237 4-217 (444)
3 2jln_A MHP1; hydantoin, transp 98.2 0.00019 6.6E-09 65.8 19.6 152 15-174 23-174 (501)
4 4djk_A Probable glutamate/gamm 98.1 0.0001 3.4E-09 67.1 16.4 215 10-238 4-231 (511)
5 3dh4_A Sodium/glucose cotransp 94.0 1.9 6.5E-05 39.4 15.5 148 16-177 19-169 (530)
6 2xq2_A Sodium/glucose cotransp 92.4 5.6 0.00019 36.8 16.2 147 17-176 49-197 (593)
7 3gia_A Uncharacterized protein 71.4 45 0.0015 28.7 11.4 48 83-130 258-305 (444)
8 3l1l_A Arginine/agmatine antip 60.6 80 0.0027 27.0 15.9 48 82-129 259-306 (445)
9 2wsw_A BCCT family betaine/car 54.0 1.2E+02 0.0042 27.4 10.9 89 83-177 179-273 (509)
10 4ain_A Glycine betaine transpo 33.8 2.8E+02 0.0094 25.3 12.1 32 84-116 181-214 (539)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=99.08 E-value=3.9e-09 Score=94.83 Aligned_cols=215 Identities=13% Similarity=0.012 Sum_probs=126.5
Q ss_pred cccccchhHHHHHHHHhhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCCcccCcHHHHHHHHc
Q 026491 14 HLEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIY 93 (238)
Q Consensus 14 ~~~~~~s~~~a~~~l~~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~~~~~~~~~~sY~~l~~~~~ 93 (238)
+++||-++++...-.+.+++|+|++.+|.. .++.|. .+++..++.+++.........+...+..+ .-.+.+..++.+
T Consensus 5 ~~~r~l~~~~~~~l~ig~~iG~Gif~~~~~-~~~~G~-~~~~~~li~~~~~~~~a~~~~el~~~~p~-~Gg~y~~~~~~~ 81 (445)
T 3l1l_A 5 ADAHKVGLIPVTLMVSGAIMGSGVFLLPAN-LASTGG-IAIYGWLVTIIGALGLSMVYAKMSFLDPS-PGGSYAYARRCF 81 (445)
T ss_dssp --CCCBCHHHHHHHHHHHHCSSHHHHHHHH-HHHHCT-HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-TTTHHHHHHHHS
T ss_pred CCCCcccHHHHHHHHHHhHHhhhHHhhHHH-HHHhhh-HHHHHHHHHHHHHHHHHHHHHHHHccCCC-CCCchhhHHhHc
Confidence 456788999999999999999999999998 888886 47777788888887777776665322111 225667778999
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhcCCChhhHHHHHHHHHH
Q 026491 94 GRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTV 173 (238)
Q Consensus 94 G~~~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~~lpl~~l~~l~~l~~~S~~~~~ 173 (238)
||+...+......+.......++....++.++..++... .. ...+.+...+..++-..-.+..|..+.++.+...
T Consensus 82 G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~ 156 (445)
T 3l1l_A 82 GPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILK---DP--WVLTITCVVVLWIFVLLNIVGPKMITRVQAVATV 156 (445)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGGG---SH--HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcccc---cc--HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHH
Confidence 999988888888777766666777777776654433211 01 1122222111111122233556666666555443
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCcCCCCCCcchhhhhhHhHHHHHHHHh-ccCchhhhhhcccCC
Q 026491 174 LSTIYIVIAIWLSVRDGLKNPARDYSIPGTTATKIFESIGACANLVFAF-NTGMLPEIQVREEFR 237 (238)
Q Consensus 174 ~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~gi~~Faf-g~~v~p~I~~~M~~~ 237 (238)
..+...++.+...+....+ +.......+.......+++.++....|+| |......+.+|+|||
T Consensus 157 ~~i~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p 220 (445)
T 3l1l_A 157 LALIPIVGIAVFGWFWFRG-ETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNP 220 (445)
T ss_dssp HHHHHHHHHHHTTSTTCCC-CCCCCC-----------HHHHHHHHHHTTTTTTHHHHGGGGBSSH
T ss_pred HHHHHHHHHHHHHHHHhCh-hhcccccCccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCc
Confidence 3332222222222222111 00000111111112446778899999999 588888999999987
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=98.68 E-value=2e-06 Score=77.02 Aligned_cols=210 Identities=12% Similarity=-0.010 Sum_probs=120.6
Q ss_pred ccccchhHHHHHHHHhhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCCcccCcHHHHHHHHcC
Q 026491 15 LEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYG 94 (238)
Q Consensus 15 ~~~~~s~~~a~~~l~~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~~~~~~~~~~sY~~l~~~~~G 94 (238)
++|+-++++...-.+..++|+|++..|..+.++.|. ...+..++.+++...+...+.+......+ .-..-+..++.+|
T Consensus 4 ~~r~l~~~~~~~l~~g~~iG~gi~~~~~~~~~~~G~-~~~~~~li~~~~~~~~~~~~~el~~~~P~-~Gg~y~~~~~~~G 81 (444)
T 3gia_A 4 KNKKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGR-NLPETFILSGIYALLVAYSYTKLGAKIVS-NAGPIAFIHKAIG 81 (444)
T ss_dssp CCCCBCHHHHHHHHHHHHHHHHTTTSHHHHHHHHGG-GHHHHHHHHHHHHHHHHHHHHHHHTTCCC-TTTHHHHHHHHHC
T ss_pred cCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHhhCCC-CCcHHHhHHHHhC
Confidence 567789999999999999999999988653667776 67777778888877777777766332111 1245677888899
Q ss_pred ccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHH--HHHHhcCCChhhHHHHHHHH
Q 026491 95 RRA-YALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVC--ALFAIGIPNLSALGVWLGVS 171 (238)
Q Consensus 95 ~~~-~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~--~lpl~~l~~l~~l~~~S~~~ 171 (238)
|+. .-.+.....+........+....++.+...++ . .....+..+.+..+ ++-..-.+..|..+.++.+.
T Consensus 82 ~~~~~g~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~--~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~ 154 (444)
T 3gia_A 82 DNIITGALSILLWMSYVISIALFAKGFAGYFLPLIN-----A--PINTFNIAITEIGIVAFFTALNFFGSKAVGRAEFFI 154 (444)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----C--CCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----C--CCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 962 11223444444445556666667776665432 1 11122211111111 11222334566666666555
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCcCCCCCCcchhhhhhHhHHHHHHHHh-ccCchhhhhhcccCC
Q 026491 172 TVLSTIYIVIAIWLSVRDGLKNPARDYSIPGTTATKIFESIGACANLVFAF-NTGMLPEIQVREEFR 237 (238)
Q Consensus 172 ~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~gi~~Faf-g~~v~p~I~~~M~~~ 237 (238)
....+...++.++..+.... ++ +.. +......+.+++.++....|+| |........+|+|||
T Consensus 155 ~~~~i~~~~~~ii~~~~~~~--~~-~~~-~~~~~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P 217 (444)
T 3gia_A 155 VLVKLLILGLFIFAGLITIH--PS-YVI-PDLAPSAVSGMIFASAIFFLSYMGFGVITNASEHIENP 217 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHCC--GG-GTS-CCCSHHHHHHHHHHHHHGGGGGTHHHHHHTTGGGBSSH
T ss_pred HHHHHHHHHHHHHHHHHHcC--hh-hcC-CCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHccCc
Confidence 43333322222222333221 11 111 1112223446777888888999 488888888889887
No 3
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=98.17 E-value=0.00019 Score=65.80 Aligned_cols=152 Identities=13% Similarity=0.044 Sum_probs=97.2
Q ss_pred ccccchhHHHHHHHHhhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCCcccCcHHHHHHHHcC
Q 026491 15 LEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYG 94 (238)
Q Consensus 15 ~~~~~s~~~a~~~l~~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~~~~~~~~~~sY~~l~~~~~G 94 (238)
++|+.++++-...-+...+..+...+........++...++.+++..++...-+.++.+.-.+.| .+|.++.|..||
T Consensus 23 ~~R~~~~~~~~~~W~g~~~~i~~~~~Ga~~~~GLs~~~a~lai~lG~li~~~~~~l~~~~G~~~G---l~~~v~~R~~FG 99 (501)
T 2jln_A 23 AERSVGPFSLAAIWFAMAIQVAIFIAAGQMTSSFQVWQVIVAIAAGCTIAVILLFFTQSAAIRWG---INFTVAARMPFG 99 (501)
T ss_dssp GGCCBCHHHHHHHHHHHHCSTHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHTHHHHHHC---CCHHHHTTTTSC
T ss_pred hhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHhHHHhhcC---CChhhhhHhhcc
Confidence 35556655544444444444444444332122344455666666665555544555544433443 469999999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhcCCChhhHHHHHHHHHHH
Q 026491 95 RRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVL 174 (238)
Q Consensus 95 ~~~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~~lpl~~l~~l~~l~~~S~~~~~~ 174 (238)
+++..+..+...+.++|....-....|+.+..+++...+ ......+++++.++. ++.. ...++.++.+..++...
T Consensus 100 ~~Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~~~g---~~~~~v~~~i~~~l~-~~~~-~~G~~~i~~~~~~~~p~ 174 (501)
T 2jln_A 100 IRGSLIPITLKALLSLFWFGFQTWLGALALDEITRLLTG---FTNLPLWIVIFGAIQ-VVTT-FYGITFIRWMNVFASPV 174 (501)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHH-HHHH-TTHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---cchHHHHHHHHHHHH-HHHH-HhCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988765431 111234566666655 5665 55678888888777543
No 4
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=98.11 E-value=0.0001 Score=67.08 Aligned_cols=215 Identities=11% Similarity=-0.005 Sum_probs=102.4
Q ss_pred CCCccccccchhHHHHHHHHhhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHH----HHHHHHHHHh--ccccCCcccC
Q 026491 10 SYFFHLEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIV----SLNANALIAK--LHEFGGKRHI 83 (238)
Q Consensus 10 ~~~~~~~~~~s~~~a~~~l~~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~----~~yt~~lL~~--~~~~~~~~~~ 83 (238)
+++.+.+||-++++...-.+..++| +.++|. .+..|.. .++..++.+.+ ..++..-+.. ..+ .|
T Consensus 4 ~~~~~~~r~l~~~~~~~l~~~~~ig--~~~~~~--~~~~G~~-~~~~~~i~~~~~~l~~al~~ael~s~~~~P-~G---- 73 (511)
T 4djk_A 4 SVQTGKAKQLTLLGFFAITASMVMA--VYEYPT--FATSGFS-LVFFLLLGGILWFIPVGLCAAEMATVDGWE-EG---- 73 (511)
T ss_dssp --------CCCHHHHHHHTGGGGCC--GGGHHH--HHTTTTH-HHHHHHHHHHHTHHHHHHHHHHHHTTSCC--------
T ss_pred cccCccCccccHHHHHHHHHHHHHh--hchhHH--HHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHcccccCC-CC----
Confidence 3445567788999999988888885 567773 4677753 33333333332 2334444444 333 33
Q ss_pred cHHHHHHHHcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhcCCCCCCchhhHHHHHHHHHHHHhcCCCh
Q 026491 84 RYRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAF--VLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNL 161 (238)
Q Consensus 84 sY~~l~~~~~G~~~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~--~~~~~~~~~~~~~~~iii~~~~~~lpl~~l~~l 161 (238)
..-..+++.+||+...+......+.......++....++.+..++ +.+. ...+....+.+++..++ ..+ -.+..
T Consensus 74 G~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~~~~~~~~~~~~~-~~i-n~~g~ 149 (511)
T 4djk_A 74 GVFAWVSNTLGPRWGFAAISFGYLQIAIGFIPMLYFVLGALSYILKWPALN--EDPITKTIAALIILWAL-ALT-QFGGT 149 (511)
T ss_dssp CHHHHHHHHHCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTTTTCGGGT--SCSSHHHHHHHHHHHHH-HHH-HHTCS
T ss_pred ChhhhHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc--cCcHHHHHHHHHHHHHH-HHH-HHhCh
Confidence 456677888999988888877777766666666666666664332 1111 11111122222221111 122 23444
Q ss_pred hhHHHHHHHHHHHH-HHHHHHHHHHHhhcCC-CCCC-CcCCCCC-CcchhhhhhHhHHHHHHHHh-ccCchhhhhhcccC
Q 026491 162 SALGVWLGVSTVLS-TIYIVIAIWLSVRDGL-KNPA-RDYSIPG-TTATKIFESIGACANLVFAF-NTGMLPEIQVREEF 236 (238)
Q Consensus 162 ~~l~~~S~~~~~~~-~~~~~i~~~~~i~~~~-~~~~-~~~~~~~-~~~~~~~~~~~a~gi~~Faf-g~~v~p~I~~~M~~ 236 (238)
|....+..+..... +...++.+...+.... .++. .+.+... .+.....+.+.++....|+| |......+.+|+||
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~a~E~k~ 229 (511)
T 4djk_A 150 KYTARIAKVGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDFSKVGTLVVFVAFILSYMGVEASATHVNEMSN 229 (511)
T ss_dssp SSHHHHTHHHHHHTTHHHHHHHHHHHHHHTC------------CCCCCTTSTTTTTTHHHHHHHHTTGGGGTGGGSSSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcccccCCCcccchHHHHHHHHHHHHhhHHHHHHHHHhccC
Confidence 55555544432211 1111111112221111 1110 0001100 11111123445677889999 48888899999998
Q ss_pred CC
Q 026491 237 RS 238 (238)
Q Consensus 237 ~~ 238 (238)
|.
T Consensus 230 P~ 231 (511)
T 4djk_A 230 PG 231 (511)
T ss_dssp CT
T ss_pred cc
Confidence 74
No 5
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=93.99 E-value=1.9 Score=39.35 Aligned_cols=148 Identities=15% Similarity=0.144 Sum_probs=78.6
Q ss_pred cccchhHHHHHHHHhhhhhh-hhhhhhHHhhhhhhhHHHHHHHHHHHHHH-HHHHHHHHhccccCCcccCcHHHHHHHHc
Q 026491 16 EMLDSWFQVGFVLTTGINSA-YVLGYPGTVMVPLGWIAGVVGLIIATIVS-LNANALIAKLHEFGGKRHIRYRDLAGHIY 93 (238)
Q Consensus 16 ~~~~s~~~a~~~l~~~~iG~-GiLalP~a~~~~~G~~~G~i~l~~~~~~~-~yt~~lL~~~~~~~~~~~~sY~~l~~~~~ 93 (238)
.|+-++|...+.+..+.+++ -.+++|-. .-+.|+........ +.++ ......+.+...+. +..|.+|.-+.-|
T Consensus 19 GR~l~~~~~~~s~~at~~Sa~~~lG~~g~-~y~~G~~~~~~~~~--~~~~~~i~~~~~~p~~~~~--~~~T~~e~l~~Rf 93 (530)
T 3dh4_A 19 GKSLPWWAVGASLIAANISAEQFIGMSGS-GYSIGLAIASYEWM--SAITLIIVGKYFLPIFIEK--GIYTIPEFVEKRF 93 (530)
T ss_dssp CSCCCHHHHHHHHHHHHCSHHHHTHHHHH-HHHTCGGGHHHHHH--HHHHHHHHHHHTHHHHHHT--TCCSHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHhChHHHHHHHH--HHHHHHHHHHHHHHHHHHc--CCccHHHHHHHHc
Confidence 45668888888887777766 67888877 56667642211111 1111 11122222222222 3578999999999
Q ss_pred CccchhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhcCCChhhHHHHHHHHH
Q 026491 94 GRRAYALTWGLQYV-NLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVST 172 (238)
Q Consensus 94 G~~~~~~v~~~~~i-~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~~lpl~~l~~l~~l~~~S~~~~ 172 (238)
|++.|.+..+...+ ..+....+-+...|..++.++ .++...-+++.++++ +.-...--++...++..+=.
T Consensus 94 g~~~~~~~a~~~l~~~~~~~~~~~l~~~~~~~~~~~--------Gi~~~~~i~i~~~i~-~~Yt~~GGl~aV~~TD~iQ~ 164 (530)
T 3dh4_A 94 NKKLKTILAVFWISLYIFVNLTSVLYLGGLALETIL--------GIPLMYSILGLALFA-LVYSIYGGLSAVVWTDVIQV 164 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--------TCCHHHHHHHHHHHH-HHTTC------CCSHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CCCHHHHHHHHHHHH-HHHHHhcchHHHHHHHHHHH
Confidence 99888776655443 222223333444555555442 233333344555544 56667778888888887775
Q ss_pred HHHHH
Q 026491 173 VLSTI 177 (238)
Q Consensus 173 ~~~~~ 177 (238)
+..+.
T Consensus 165 ~im~~ 169 (530)
T 3dh4_A 165 FFLVL 169 (530)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
No 6
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=92.41 E-value=5.6 Score=36.77 Aligned_cols=147 Identities=16% Similarity=0.131 Sum_probs=77.7
Q ss_pred ccchhHHHHHHHHhhhhhh-hhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCCcccCcHHHHHHHHcCc
Q 026491 17 MLDSWFQVGFVLTTGINSA-YVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYGR 95 (238)
Q Consensus 17 ~~~s~~~a~~~l~~~~iG~-GiLalP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~~~~~~~~~~sY~~l~~~~~G~ 95 (238)
|+-+++.....+..+.+++ ..++.|-. .-+.|+........ .++......+.+.+...+. +..|.+|.-+.=||+
T Consensus 49 R~l~~~~~~~Sl~at~~sa~t~lG~~g~-~y~~G~~~~~~~~~-~~~~~~~~~~~~~p~~~r~--~~~T~~e~l~~Rfg~ 124 (593)
T 2xq2_A 49 KSLPWWAVGASLIAANISAEQFIGMSGS-GYSIGLAIASYEWM-SAITLIIVGKYFLPIFIEK--GIYTIPEFVEKRFNK 124 (593)
T ss_dssp --CCHHHHHHHHHGGGSSHHHHHHHHHH-HHHTCGGGGHHHHH-HHHHHHHHHHTHHHHHHHT--TCCSHHHHHHHHTCH
T ss_pred CCCCHHHHHHHHHHHHhcHHHHhhHhHH-HHHcCHHHHHHHHH-HHHHHHHHHHHHHHHHHhC--CCCCcHHHHHHHccC
Confidence 5668888888887766665 55788877 55667642211110 0000011112222222222 356899999988999
Q ss_pred cchhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhcCCChhhHHHHHHHHHHH
Q 026491 96 RAYALTWGLQYV-NLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVL 174 (238)
Q Consensus 96 ~~~~~v~~~~~i-~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~~lpl~~l~~l~~l~~~S~~~~~~ 174 (238)
+.|.+..+...+ ..+......+...|..++.++. ++...-+++.++++ ..-..+--+|...++-.+-.+.
T Consensus 125 ~~~~~~ai~~l~~~~~~~~~~~l~~~~~~l~~~~G--------i~~~~~i~i~~~i~-~~Yt~~GGl~av~~TD~iQ~ii 195 (593)
T 2xq2_A 125 KLKTILAVFWISLYIFVNLTSVLYLGGLALETILG--------IPLMYSILGLALFA-LVYSIYGGLSAVVWTDVIQVFF 195 (593)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHC--------CCHHHHHHHHHHHH-HHHHHTTC---CCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------ccHHHHHHHHHHHH-HHHHHhcchHHHHHHHHHHHHH
Confidence 887766654433 2333333344445666665541 33333344455544 5666778888888877776544
Q ss_pred HH
Q 026491 175 ST 176 (238)
Q Consensus 175 ~~ 176 (238)
.+
T Consensus 196 ml 197 (593)
T 2xq2_A 196 LV 197 (593)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 7
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=71.35 E-value=45 Score=28.71 Aligned_cols=48 Identities=8% Similarity=-0.148 Sum_probs=39.4
Q ss_pred CcHHHHHHHHcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026491 83 IRYRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVL 130 (238)
Q Consensus 83 ~sY~~l~~~~~G~~~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~ 130 (238)
....++.+..+|+++..++.+...+..+++..+.+...+..+..+-++
T Consensus 258 ~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~l~a~a~d 305 (444)
T 3gia_A 258 NALAVAAKPFLGNLGFLLISIGALFSISSAMNATIYGGANVAYSLAKD 305 (444)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHH
T ss_pred hhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 356788888889988888888888888999888888888888777654
No 8
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=60.59 E-value=80 Score=27.03 Aligned_cols=48 Identities=27% Similarity=0.162 Sum_probs=41.9
Q ss_pred cCcHHHHHHHHcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026491 82 HIRYRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFV 129 (238)
Q Consensus 82 ~~sY~~l~~~~~G~~~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~ 129 (238)
.....++.+..+|+++..++.+...+..+++..+++...+..+..+-+
T Consensus 259 ~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~ 306 (445)
T 3l1l_A 259 ASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAAD 306 (445)
T ss_dssp TCTHHHHHHHHHCTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 357899999999999999999998899999999999999888887665
No 9
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A*
Probab=54.04 E-value=1.2e+02 Score=27.43 Aligned_cols=89 Identities=12% Similarity=-0.026 Sum_probs=44.1
Q ss_pred CcHHHHH-HHHcCccchhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhcCCCCCCchhhHHHHHHHH-HHHHhc
Q 026491 83 IRYRDLA-GHIYGRRAYALTWGLQYVNLFMINTGYIIL---AGQALKAAFVLFWKDDHTMKLPYFIAIAGFVC-ALFAIG 157 (238)
Q Consensus 83 ~sY~~l~-~~~~G~~~~~~v~~~~~i~~~g~~v~yli~---~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~-~lpl~~ 157 (238)
.=|+-++ ++..||.++.+=.+.++.+.+|...+.=+- ++.-++.++ ..++ +....+++..+.. +.-+|-
T Consensus 179 ~l~PllG~~r~~G~~G~~IDilav~at~~G~atsLGlg~~qi~~Gl~~lf---Gi~~---~~~~qi~ii~vit~~~~~Sa 252 (509)
T 2wsw_A 179 TLVPLVGEKHVNGLFGTVVDNFYLVALILAMGTSLGLATPLVTECIQYLF---GIPH---TLQLDAIIISCWILLNAICV 252 (509)
T ss_dssp GCHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCCC---CHHHHHHHHHHHHHHHHHHH
T ss_pred HhHhhcCCcccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---CCCC---ccHHHHHHHHHHHHHHHHHH
Confidence 3488888 788888877443444445566765553222 233344333 2122 1222222222221 134445
Q ss_pred CCCh-hhHHHHHHHHHHHHHH
Q 026491 158 IPNL-SALGVWLGVSTVLSTI 177 (238)
Q Consensus 158 l~~l-~~l~~~S~~~~~~~~~ 177 (238)
..-+ |-++++|-+.....+.
T Consensus 253 ~sGl~kGIk~LS~~N~~la~~ 273 (509)
T 2wsw_A 253 AFGLQKGVKIASDVRTYLSFL 273 (509)
T ss_dssp HTTCHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHH
Confidence 5555 6677777776544433
No 10
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=33.79 E-value=2.8e+02 Score=25.31 Aligned_cols=32 Identities=13% Similarity=-0.067 Sum_probs=20.4
Q ss_pred cHHHHHHH-HcCccchhHHHHHHH-HHHHHHHHHH
Q 026491 84 RYRDLAGH-IYGRRAYALTWGLQY-VNLFMINTGY 116 (238)
Q Consensus 84 sY~~l~~~-~~G~~~~~~v~~~~~-i~~~g~~v~y 116 (238)
=|+=++++ ..|+.++ ++|+.-+ .+.+|..++.
T Consensus 181 l~PllG~r~~~G~~G~-~IDilav~atv~GvatSL 214 (539)
T 4ain_A 181 FVPLIGEKGAEGWLGK-LIDILAIIATVFGTACSL 214 (539)
T ss_dssp GHHHHHHHHTTSHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred hHhhcCCCccCCcchh-hhHHHHHHHHHHHHhhhH
Confidence 37888887 7888766 5555444 4556665553
Done!