Query 026492
Match_columns 238
No_of_seqs 127 out of 204
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 14:51:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026492.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026492hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2huo_A Inositol oxygenase; pro 100.0 6E-111 2E-115 757.9 12.9 205 27-235 10-228 (289)
2 2ibn_A Inositol oxygenase; red 100.0 3.3E-99 1E-103 672.0 10.2 178 55-235 3-189 (250)
3 2o08_A BH1327 protein; putativ 94.3 0.018 6.2E-07 47.0 2.3 52 88-146 2-57 (188)
4 3ccg_A HD superfamily hydrolas 94.1 0.015 5.2E-07 47.5 1.4 52 88-146 3-58 (190)
5 2ogi_A Hypothetical protein SA 93.5 0.04 1.4E-06 45.4 2.9 52 88-146 10-65 (196)
6 3hc1_A Uncharacterized HDOD do 88.2 0.3 1E-05 42.5 3.2 66 82-147 74-159 (305)
7 3i7a_A Putative metal-dependen 86.5 0.59 2E-05 40.1 4.1 69 79-147 68-164 (281)
8 3b57_A LIN1889 protein; Q92AN1 84.5 0.51 1.8E-05 39.1 2.7 55 92-146 9-64 (209)
9 2qgs_A Protein Se1688; alpha-h 83.5 0.64 2.2E-05 39.1 2.8 52 91-145 8-64 (225)
10 3dto_A BH2835 protein; all alp 83.0 0.72 2.5E-05 39.4 3.0 57 90-146 7-64 (223)
11 3djb_A Hydrolase, HD family; a 82.8 0.61 2.1E-05 39.8 2.5 57 90-146 7-64 (223)
12 3ljx_A MMOQ response regulator 82.2 0.68 2.3E-05 40.1 2.6 69 80-148 61-150 (288)
13 3m1t_A Putative phosphohydrola 81.2 0.74 2.5E-05 39.5 2.4 66 82-148 62-146 (275)
14 2pjq_A Uncharacterized protein 80.8 0.74 2.5E-05 39.0 2.2 58 88-145 10-68 (231)
15 2pq7_A Predicted HD superfamil 74.3 2.2 7.5E-05 35.2 3.3 53 90-145 15-71 (220)
16 2l3i_A Aoxki4A, antimicrobial 72.6 3.1 0.00011 26.0 2.8 26 208-233 5-30 (30)
17 3kq5_A Hypothetical cytosolic 65.1 1.4 4.6E-05 41.8 0.1 34 113-146 77-119 (393)
18 3sk9_A Putative uncharacterize 64.0 1.8 6.2E-05 38.0 0.7 42 109-152 23-84 (265)
19 1ckk_B Camkk, protein (RAT Ca2 62.7 2.2 7.4E-05 26.3 0.6 14 224-237 13-26 (26)
20 1vqr_A Hypothetical protein CJ 62.4 2.3 7.7E-05 36.6 1.0 69 79-147 75-165 (297)
21 3tm8_A BD1817, uncharacterized 55.1 5 0.00017 35.5 1.9 36 112-147 167-210 (328)
22 3m5f_A Metal dependent phospho 45.8 6.6 0.00022 34.9 1.2 17 131-147 57-73 (244)
23 3mem_A Putative signal transdu 44.3 3.8 0.00013 38.0 -0.7 69 80-148 230-323 (457)
24 3gw7_A Uncharacterized protein 38.1 9.9 0.00034 32.8 1.0 41 105-145 22-63 (239)
25 1iq5_B Ca2+/calmodulin depende 37.1 15 0.00052 22.7 1.5 15 224-238 13-27 (27)
26 2hek_A Hypothetical protein; p 36.2 13 0.00045 34.0 1.6 37 111-147 50-91 (371)
27 3nqw_A CG11900; stringent resp 34.1 32 0.0011 28.2 3.5 54 90-143 9-65 (179)
28 2wzo_A Transforming growth fac 34.0 13 0.00046 29.5 1.1 32 133-169 7-39 (146)
29 3nr1_A HD domain-containing pr 31.4 34 0.0012 28.1 3.2 35 109-143 28-63 (178)
30 4dmb_A HD domain-containing pr 28.6 11 0.00039 32.1 -0.2 41 113-166 47-90 (204)
31 1ynb_A Hypothetical protein AF 27.3 15 0.00052 30.5 0.4 33 113-146 40-80 (173)
32 1chu_A Protein (L-aspartate ox 26.3 59 0.002 30.3 4.2 51 73-123 443-500 (540)
33 2dqb_A Deoxyguanosinetriphosph 24.8 18 0.00062 33.4 0.5 34 112-145 76-113 (376)
34 2paq_A 5'-deoxynucleotidase YF 23.4 22 0.00076 29.7 0.7 35 113-147 33-77 (201)
35 1vj7_A Bifunctional RELA/SPOT; 23.0 37 0.0013 31.6 2.2 53 90-143 28-80 (393)
36 3aql_A Poly(A) polymerase; tra 22.4 22 0.00075 32.9 0.5 36 111-146 266-303 (415)
37 2e5v_A L-aspartate oxidase; ar 20.9 73 0.0025 28.9 3.7 39 73-123 398-436 (472)
No 1
>2huo_A Inositol oxygenase; protein-substrate complex, HD domain fold, oxidoreductase; HET: INS; 2.00A {Mus musculus} SCOP: a.211.1.4 PDB: 3bxd_A*
Probab=100.00 E-value=6.3e-111 Score=757.89 Aligned_cols=205 Identities=45% Similarity=0.848 Sum_probs=183.5
Q ss_pred eecCC-CCCCCCc----cccccCCCCccchhhhHHHHHHHHHhhhhhHHHHHHHHHHHhcCCCCccccHHHHHHHhhhhc
Q 026492 27 SLDGG-FLVPQTN----SFGHTFRDYDAEGERQEGVENFYRINHINQTYDFVKKMREEYGKLNRVEMSIWECCELLNDVV 101 (238)
Q Consensus 27 vldg~-f~~P~~n----~~~~~FR~Y~~~~~r~~~V~~fY~~~H~~QTvdfv~~~~~~~~~~~~~~MsI~EA~e~Ln~lV 101 (238)
.||++ |.+|+.+ +++++||||+. +.++++|++|||+||++||||||++||++|++++|++|||||||++||+||
T Consensus 10 ~~d~~~~~~p~~~~~~~k~~~~FR~Y~~-~~~~~~V~~fYr~~H~~QTvdfv~~~~~~~~~~~~~~MtIweA~e~Ln~Lv 88 (289)
T 2huo_A 10 GPDPSLVYRPDVDPEMAKSKDSFRNYTS-GPLLDRVFTTYKLMHTHQTVDFVSRKRIQYGSFSYKKMTIMEAVGMLDDLV 88 (289)
T ss_dssp ----------------------CCCSSS-CSSHHHHHHHHHHHHHHCCHHHHHHHHHHHTTCCSCEECHHHHHHHGGGCC
T ss_pred cCCccceeccCccccccccHHHhhCccc-chhHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHhc
Confidence 38888 6888877 67889999997 557889999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHhcCCCCCcceehhceeccccccccCCCCCCCCeeeecCceeeccccCCCccccc-cc
Q 026492 102 DESDPDLDEPQIEHLLQTAEAIRKDYPDEDWLHLTGLIHDLGKVLNLPSFGGLPQWAVVGDTFPVGCAFDESIVHHK-YF 180 (238)
Q Consensus 102 DeSDPD~dlpqi~H~lQTAEaiR~d~p~pDW~qLtGliHDLGKvl~~p~fg~~~QWavvGdTfpVGC~f~~~iv~~e-~f 180 (238)
||||||+|+|||+||||||||||+|||..||||||||||||||||++ +++|||+||||||||||+|+++|||++ +|
T Consensus 89 DeSDPD~dl~qi~H~lQTAEaiR~d~pp~dW~qLtGLiHDLGKvl~~---~~epQW~vvGDTfpVGC~f~~~iv~~e~~F 165 (289)
T 2huo_A 89 DESDPDVDFPNSFHAFQTAEGIRKAHPDKDWFHLVGLLHDLGKIMAL---WGEPQWAVVGDTFPVGCRPQASVVFCDSTF 165 (289)
T ss_dssp CSSCTTCCSCHHHHHHHHHHHHHHHCTTCHHHHHHHHHTTGGGGGGG---GTCCGGGTSSCCCBSSSCCCTTSTTTTTSC
T ss_pred CCcCCccchhHHHHHHHHHHHHHHhCCCcchheeeeecccchhhhhh---cCCCceeeecCcceeccccccccccchhhc
Confidence 99999999999999999999999999877999999999999999987 469999999999999999999999999 99
Q ss_pred ccCCCCCCCCccccCccccCCCCcccccccccchhHHHHHHH--------HHHhHhhhccccc
Q 026492 181 KENPDYSNPAFNTEYGVYSEGCGLDNVMMSWGHDDYMYLVKN--------LQAFIKSYFSILL 235 (238)
Q Consensus 181 ~~NpD~~~p~ynt~~GiY~~~CGLdnv~mSWGHDEYlY~Vlk--------eaL~mIRyHSFYp 235 (238)
++|||.+||+||||||||+||||||||+||||||||||+|+| |||+|||||||||
T Consensus 166 ~~NpD~~~p~YnTk~GiY~p~CGLdnV~mSWGHDEYlY~Vlk~n~stLP~eaL~mIRyHSFYp 228 (289)
T 2huo_A 166 QDNPDLQDPRYSTELGMYQPHCGLENVLMSWGHDEYLYQMMKFNKFSLPSEAFYMIRFHSFYP 228 (289)
T ss_dssp TTCGGGGSTTTSSSSTTCCTTCCGGGSCBCSSHHHHHHHHHHHTTCCCCHHHHHHHHHTTCHH
T ss_pred cCCCCCCCccccccCCcccCCCCccceeecccchHHHHHHHHcCCCCCCHHHHHHHHHhccCc
Confidence 999999999999999999999999999999999999999999 9999999999998
No 2
>2ibn_A Inositol oxygenase; reductase, DIIRON, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: MSE I1N; 1.50A {Homo sapiens} SCOP: a.211.1.4
Probab=100.00 E-value=3.3e-99 Score=671.97 Aligned_cols=178 Identities=49% Similarity=0.906 Sum_probs=171.5
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHhcCCCCccccHHHHHHHhhhhcCCCCCCCChHHHHHHHHHHHHHHhcCCCCCcce
Q 026492 55 EGVENFYRINHINQTYDFVKKMREEYGKLNRVEMSIWECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRKDYPDEDWLH 134 (238)
Q Consensus 55 ~~V~~fY~~~H~~QTvdfv~~~~~~~~~~~~~~MsI~EA~e~Ln~lVDeSDPD~dlpqi~H~lQTAEaiR~d~p~pDW~q 134 (238)
++|++|||+||++||||||++||++|++++|++|||||||++||+||||||||+++|||+|+|||||+||+|||+.||||
T Consensus 3 ~~V~~~Yr~~h~~QTv~fv~~~~~~~~~~~~~~mti~ea~~~Ln~lvDeSDPD~~v~ql~HaLQTAe~ar~dg~d~dw~~ 82 (250)
T 2ibn_A 3 DRVFTTYKLMHTHQTVDFVRSKHAQFGGFSYKKMTVMEAVDLLDGLVDESDPDVDFPNSFHAFQTAEGIRKAHPDKDWFH 82 (250)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHTTCCSCEECHHHHHHHGGGCCCTTC---CCCHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHhcCCcCCCCcccHHHHHHHHHHHHHHhCcChhHHH
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999998779999
Q ss_pred ehhceeccccccccCCCCCCCCeeeecCceeeccccCCCccccc-ccccCCCCCCCCccccCccccCCCCcccccccccc
Q 026492 135 LTGLIHDLGKVLNLPSFGGLPQWAVVGDTFPVGCAFDESIVHHK-YFKENPDYSNPAFNTEYGVYSEGCGLDNVMMSWGH 213 (238)
Q Consensus 135 LtGliHDLGKvl~~p~fg~~~QWavvGdTfpVGC~f~~~iv~~e-~f~~NpD~~~p~ynt~~GiY~~~CGLdnv~mSWGH 213 (238)
|+||||||||+|++ +++|||+||||||||||+|+++|||++ +|++|||.+||+||||||||+||||||||+|||||
T Consensus 83 laaLlHDLGkll~~---~~~~qW~vvgdtfpvGc~f~~~iv~~e~~f~~NpD~~~~~Ynt~~GiY~~~CGLdnv~msWgh 159 (250)
T 2ibn_A 83 LVGLLHDLGKVLAL---FGEPQWAVVGDTFPVGCRPQASVVFCDSTFQDNPDLQDPRYSTELGMYQPHCGLDRVLMSWGH 159 (250)
T ss_dssp HHHHHTTGGGHHHH---TTCCGGGTSSCCCBSSSCCCTTSTTHHHHCTTCGGGGCTTTSSSSTTCCTTCCGGGSCBCCSH
T ss_pred HHHHHhccHhhhcc---cCCcchhhccCcccccCccchhhcchhhcccCCCCCCCccccccCCcccCCCCccceeecccc
Confidence 99999999999987 468999999999999999999999999 99999999999999999999999999999999999
Q ss_pred hhHHHHHHH--------HHHhHhhhccccc
Q 026492 214 DDYMYLVKN--------LQAFIKSYFSILL 235 (238)
Q Consensus 214 DEYlY~Vlk--------eaL~mIRyHSFYp 235 (238)
|||||+|+| |||+|||||||||
T Consensus 160 DEYlY~Vlk~n~stLP~eaL~mIRyhSfyp 189 (250)
T 2ibn_A 160 DEYMYQVMKFNKFSLPPEAFYMIRFHSFYP 189 (250)
T ss_dssp HHHHHHHHHHHTCCCCHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHhccCc
Confidence 999999999 9999999999998
No 3
>2o08_A BH1327 protein; putative HD superfamily hydrolase, structural genomics, JOIN for structural genomics, JCSG; HET: UNL PG4 DGI; 1.90A {Bacillus halodurans}
Probab=94.31 E-value=0.018 Score=46.97 Aligned_cols=52 Identities=19% Similarity=0.235 Sum_probs=39.7
Q ss_pred ccHHHHHHHhhhhcCCCCCCCChHHHHHHHHHHHHHHh----cCCCCCcceehhceecccccc
Q 026492 88 MSIWECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRK----DYPDEDWLHLTGLIHDLGKVL 146 (238)
Q Consensus 88 MsI~EA~e~Ln~lVDeSDPD~dlpqi~H~lQTAEaiR~----d~p~pDW~qLtGliHDLGKvl 146 (238)
|++.++.++|.+.+++ ....|.+.+|...+. -+-+++-.-+.||+||+||+.
T Consensus 2 ~~~~~~~~~l~~~l~~-------~~~~Hs~~Va~~A~~lA~~~g~~~~~~~~agLLHDIGk~~ 57 (188)
T 2o08_A 2 MNRGKALQLVKPHLTE-------HRYQHTIGVMETAIDLAKLYGADQQKAELAAIFHDYAKFR 57 (188)
T ss_dssp CCHHHHHHHHGGGCCH-------HHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTTTS
T ss_pred CCHHHHHHHHHHhCCH-------HHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCC
Confidence 7888999999987653 467999998877543 333455677999999999985
No 4
>3ccg_A HD superfamily hydrolase; NP_347894.1, HD domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.50A {Clostridium acetobutylicum atcc 824}
Probab=94.10 E-value=0.015 Score=47.48 Aligned_cols=52 Identities=23% Similarity=0.269 Sum_probs=40.2
Q ss_pred ccHHHHHHHhhhhcCCCCCCCChHHHHHHHHHHHHHH----hcCCCCCcceehhceecccccc
Q 026492 88 MSIWECCELLNDVVDESDPDLDEPQIEHLLQTAEAIR----KDYPDEDWLHLTGLIHDLGKVL 146 (238)
Q Consensus 88 MsI~EA~e~Ln~lVDeSDPD~dlpqi~H~lQTAEaiR----~d~p~pDW~qLtGliHDLGKvl 146 (238)
|++.++.+.|.+.+++ ....|.+.+|...+ +-+-+++-..+.||+||+||+.
T Consensus 3 ~~~~~~~~~l~~~~~~-------~~~~Hs~~Va~~A~~lA~~~g~d~~~~~~AgLLHDiGk~~ 58 (190)
T 3ccg_A 3 WSYDKITDYLMNNLGE-------KRYKHSLGVMDTAVRLAGIYNEDTEKARIAGLVHDCAKKL 58 (190)
T ss_dssp CCHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTTTS
T ss_pred CCHHHHHHHHHHhCCH-------HHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCC
Confidence 7888898999887653 45789999887744 3343556678999999999986
No 5
>2ogi_A Hypothetical protein SAG1661; structural genomics, joint center for structural genomics, J protein structure initiative; HET: GDP MES; 1.85A {Streptococcus agalactiae serogroup V}
Probab=93.50 E-value=0.04 Score=45.39 Aligned_cols=52 Identities=21% Similarity=0.270 Sum_probs=40.2
Q ss_pred ccHHHHHHHhhhhcCCCCCCCChHHHHHHHHHHHHHH----hcCCCCCcceehhceecccccc
Q 026492 88 MSIWECCELLNDVVDESDPDLDEPQIEHLLQTAEAIR----KDYPDEDWLHLTGLIHDLGKVL 146 (238)
Q Consensus 88 MsI~EA~e~Ln~lVDeSDPD~dlpqi~H~lQTAEaiR----~d~p~pDW~qLtGliHDLGKvl 146 (238)
|++.++.++|...+++ ....|.+.+|...+ +-+-+++-..+.||+||+||+.
T Consensus 10 ~~~~~~~~~l~~~l~~-------~~~~Hs~~Va~~A~~lA~~~g~d~~~~~~AgLLHDIGK~~ 65 (196)
T 2ogi_A 10 LDRTELLSKVRHMMSD-------KRFNHVLGVERAAIELAERYGYDKEKAGLAALLHDYAKEL 65 (196)
T ss_dssp SCHHHHHHHHHTTSCH-------HHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTTTC
T ss_pred ccHHHHHHHHHHHCCH-------HHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHcCCcC
Confidence 8889999999987653 46799999887754 3333456678999999999985
No 6
>3hc1_A Uncharacterized HDOD domain protein; HDOD domain protein with unknown function, STRU genomics, joint center for structural genomics; 1.90A {Geobacter sulfurreducens}
Probab=88.15 E-value=0.3 Score=42.47 Aligned_cols=66 Identities=21% Similarity=0.209 Sum_probs=43.1
Q ss_pred CCCCccccHHHHHHHhhh--------------hcCCCCCCCChHH-HHHHHHHHHHHHhc----C-CCCCcceehhceec
Q 026492 82 KLNRVEMSIWECCELLND--------------VVDESDPDLDEPQ-IEHLLQTAEAIRKD----Y-PDEDWLHLTGLIHD 141 (238)
Q Consensus 82 ~~~~~~MsI~EA~e~Ln~--------------lVDeSDPD~dlpq-i~H~lQTAEaiR~d----~-p~pDW~qLtGliHD 141 (238)
++.+.--||.+|+-+|-. .........+... ..|.+.+|..++.- + ++++-.-++||+||
T Consensus 74 ~~~~~I~si~~Av~~LG~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~hs~~va~~a~~la~~~~~~~~~~~~~agllHD 153 (305)
T 3hc1_A 74 SAARPISSIRDAVIYLGLDLLREAIFTCAIVDLFKTGKGPLNRSTLWAHSLGVARIAKLIAERTGFLNPVNVYVAGLLHD 153 (305)
T ss_dssp HTTSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSSCHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHTTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 455667888888876541 1222223334333 49999998876532 2 24566789999999
Q ss_pred cccccc
Q 026492 142 LGKVLN 147 (238)
Q Consensus 142 LGKvl~ 147 (238)
+||+..
T Consensus 154 IGkl~l 159 (305)
T 3hc1_A 154 VGEVFI 159 (305)
T ss_dssp HHHHHH
T ss_pred hhHHHH
Confidence 999984
No 7
>3i7a_A Putative metal-dependent phosphohydrolase; YP_926882.1, STRU genomics, joint center for structural genomics, JCSG; 2.06A {Shewanella amazonensis SB2B}
Probab=86.51 E-value=0.59 Score=40.08 Aligned_cols=69 Identities=13% Similarity=0.080 Sum_probs=43.5
Q ss_pred HhcCCCCccccHHHHHHHhh--------------hhcCCCCCCCC--hH-HHHHHHHHHHHHH---h--------cCCCC
Q 026492 79 EYGKLNRVEMSIWECCELLN--------------DVVDESDPDLD--EP-QIEHLLQTAEAIR---K--------DYPDE 130 (238)
Q Consensus 79 ~~~~~~~~~MsI~EA~e~Ln--------------~lVDeSDPD~d--lp-qi~H~lQTAEaiR---~--------d~p~p 130 (238)
-|.++.+.--||.+|+-+|- .+.+...|-.. .. -..|.+.+|..++ + ...++
T Consensus 68 ~~~~~~~~i~si~~Av~~LG~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~hs~~vA~~a~~la~~~~~~~~~~~~~~ 147 (281)
T 3i7a_A 68 ALYSRGVPAENINSAVTRIGLTQIKSIATSVAMEQLFISTNEMVWEVMDEVWRTSIDVTAAACSLLQIYNKKHPGSGLNY 147 (281)
T ss_dssp TTTCSSSCCCSHHHHHHHHCTTTHHHHHHHHTTGGGSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCCH
T ss_pred HHhCCCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCH
Confidence 34456677789999988753 12333222221 22 3489988876543 2 22355
Q ss_pred Ccceehhceeccccccc
Q 026492 131 DWLHLTGLIHDLGKVLN 147 (238)
Q Consensus 131 DW~qLtGliHDLGKvl~ 147 (238)
+-.-++||+||+||+..
T Consensus 148 ~~~~laGLLHdiGkl~l 164 (281)
T 3i7a_A 148 DTLTLAGLVHNIGALPV 164 (281)
T ss_dssp HHHHHHHHHTTTTHHHH
T ss_pred HHHHHHHHHHHCCHHHH
Confidence 67789999999999874
No 8
>3b57_A LIN1889 protein; Q92AN1, X-RAY, NESG, structural genomics, PSI-2, protein structure initiative; 3.00A {Listeria innocua CLIP11262} SCOP: a.211.1.1
Probab=84.52 E-value=0.51 Score=39.07 Aligned_cols=55 Identities=15% Similarity=0.224 Sum_probs=31.5
Q ss_pred HHHHHhhhhcCCCCCCCChHHHHHHHHHHHHHHh-cCCCCCcceehhceecccccc
Q 026492 92 ECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRK-DYPDEDWLHLTGLIHDLGKVL 146 (238)
Q Consensus 92 EA~e~Ln~lVDeSDPD~dlpqi~H~lQTAEaiR~-d~p~pDW~qLtGliHDLGKvl 146 (238)
++.+.+...+...|+.-++.-+...+++|..|.+ .+.+++-+.+.+|+||+||.-
T Consensus 9 ~~~~~v~~~~~~~~~~H~~~H~~rV~~~a~~ia~~~~~d~~~v~~AAlLHDig~~~ 64 (209)
T 3b57_A 9 SAKNWMHSHFENETTGHDWSHIKRVWKLSKEIQSKEGGDLFTIELAALFHDYSDIK 64 (209)
T ss_dssp HHHHHHHTTC------CCHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHTTCCC--
T ss_pred HHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhccCccc
Confidence 3444455555444556666555555566666665 355777889999999999965
No 9
>2qgs_A Protein Se1688; alpha-helical protein, structural genomics, PSI-2, protein S initiative, northeast structural genomics consortium; 2.00A {Staphylococcus epidermidis} SCOP: a.211.1.1
Probab=83.45 E-value=0.64 Score=39.12 Aligned_cols=52 Identities=21% Similarity=0.300 Sum_probs=31.5
Q ss_pred HHHHHHhhhhcCCCCCCCChHHHHHHHHH---HHHH-Hh-cCCCCCcceehhceeccccc
Q 026492 91 WECCELLNDVVDESDPDLDEPQIEHLLQT---AEAI-RK-DYPDEDWLHLTGLIHDLGKV 145 (238)
Q Consensus 91 ~EA~e~Ln~lVDeSDPD~dlpqi~H~lQT---AEai-R~-d~p~pDW~qLtGliHDLGKv 145 (238)
.++.+.+...+...++.-+ +.|.+.. |..| .+ .+.+++-+.+++|+||+||.
T Consensus 8 ~~~~~~v~~~~~~~~~~H~---~~H~~rV~~~a~~i~a~~~~~d~~~l~lAAlLHDigk~ 64 (225)
T 2qgs_A 8 KKAYEYMKSFHQHDTTGHD---IAHVERVYNNACYIAKRENITDTLVIELSSLLHDTVDS 64 (225)
T ss_dssp HHHHHHHHHHTTTCSSCHH---HHHHHHHHHHHHHHHHHTTCSCCHHHHHHHHHTTTTCC
T ss_pred HHHHHHHHHHHhcCCCccC---HHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHcCCCC
Confidence 3344444444543344433 4566554 4455 54 34577788999999999983
No 10
>3dto_A BH2835 protein; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Bacillus halodurans} SCOP: a.211.1.1
Probab=83.02 E-value=0.72 Score=39.40 Aligned_cols=57 Identities=18% Similarity=0.123 Sum_probs=35.1
Q ss_pred HHHHHHHhhhhcCCCCCCCChHHHHHHHHHHHHHH-hcCCCCCcceehhceecccccc
Q 026492 90 IWECCELLNDVVDESDPDLDEPQIEHLLQTAEAIR-KDYPDEDWLHLTGLIHDLGKVL 146 (238)
Q Consensus 90 I~EA~e~Ln~lVDeSDPD~dlpqi~H~lQTAEaiR-~d~p~pDW~qLtGliHDLGKvl 146 (238)
|..+.+.+.......|+.-++.-+.-...+|..|- +.+-+++-+.+.+|+||+||.-
T Consensus 7 i~~~~~~v~~~l~~~~~~H~~~H~~rV~~~a~~ia~~~~~d~~~l~~AalLHDig~~k 64 (223)
T 3dto_A 7 LQSAEAWVKKQLMDEYSGHDWYHIRRVTLMAKAIGEQEKVDVFVVQIAALFHDLIDDK 64 (223)
T ss_dssp HHHHHHHHHHTTTTC----CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHSTTC--
T ss_pred HHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhccccc
Confidence 44455556666666667777766666666677764 3445667789999999999964
No 11
>3djb_A Hydrolase, HD family; all alpha-helical protein., structural genomics, PSI-2, protein structure initiative; 2.90A {Bacillus thuringiensis serovarkonkukian} SCOP: a.211.1.1
Probab=82.76 E-value=0.61 Score=39.80 Aligned_cols=57 Identities=12% Similarity=0.221 Sum_probs=37.7
Q ss_pred HHHHHHHhhhhcCCCCCCCChHHHHHHHHHHHHHHh-cCCCCCcceehhceecccccc
Q 026492 90 IWECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRK-DYPDEDWLHLTGLIHDLGKVL 146 (238)
Q Consensus 90 I~EA~e~Ln~lVDeSDPD~dlpqi~H~lQTAEaiR~-d~p~pDW~qLtGliHDLGKvl 146 (238)
|..+.+.+.......|+.-++.-+.-...+|..|-+ .+.+++.+.+++|+||+||.-
T Consensus 7 i~~~~~~v~~~l~~~~~~H~~~H~~rV~~~a~~ia~~~~~d~~~l~~AAlLHDig~~k 64 (223)
T 3djb_A 7 IEKTITFVKHILEKDASGHDWYHIRRVHKMAISLSEQEGGNRFIIEMAALLHDVADEK 64 (223)
T ss_dssp HHHHHHHHHHHTTSSSCTTTHHHHHHHHHHHHHHHTTTCSCHHHHHHHHTTHHHHC--
T ss_pred HHHHHHHHHHHhhcCCCcCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhccccc
Confidence 344445555666666667777666666667777654 344667889999999999943
No 12
>3ljx_A MMOQ response regulator; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Methylococcus capsulatus} PDB: 3ljv_A 3p3q_A
Probab=82.21 E-value=0.68 Score=40.08 Aligned_cols=69 Identities=17% Similarity=0.148 Sum_probs=43.3
Q ss_pred hcCCCCccccHHHHHHHhhh-----------h---cCCCC-CCCChHH-HHHHHHHHHHHHhc----C-CCCCcceehhc
Q 026492 80 YGKLNRVEMSIWECCELLND-----------V---VDESD-PDLDEPQ-IEHLLQTAEAIRKD----Y-PDEDWLHLTGL 138 (238)
Q Consensus 80 ~~~~~~~~MsI~EA~e~Ln~-----------l---VDeSD-PD~dlpq-i~H~lQTAEaiR~d----~-p~pDW~qLtGl 138 (238)
+.++.+.--||.+|+-+|=. + ++... ...+... ..|.+++|..+|.- + ++++-.-++||
T Consensus 61 ~~~~~~~I~si~~Av~~LG~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~hs~~~A~~a~~la~~~~~~~~~~~~~agL 140 (288)
T 3ljx_A 61 AQGTRRPVASVIDAIDLVGLPAVRQFALSLSLIDAHREGRCEAFDYAAYWQKSLARAVALQSITAQASTVAPKEAFTLGL 140 (288)
T ss_dssp C--CCSCCCSHHHHHHHHCHHHHHHHHHGGGC----CTTSCTTSCHHHHHHHHHHHHHHHHHHHHTSSSSCHHHHHHHHH
T ss_pred ccCCCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 33456677899999876531 1 12111 1233333 48999999886632 2 24567789999
Q ss_pred eecccccccc
Q 026492 139 IHDLGKVLNL 148 (238)
Q Consensus 139 iHDLGKvl~~ 148 (238)
+||+||++..
T Consensus 141 LhdiGkl~l~ 150 (288)
T 3ljx_A 141 LADVGRLALA 150 (288)
T ss_dssp HTTHHHHHHH
T ss_pred HHhccHHHHH
Confidence 9999999853
No 13
>3m1t_A Putative phosphohydrolase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE GOL; 1.62A {Shewanella amazonensis} SCOP: a.211.1.0
Probab=81.23 E-value=0.74 Score=39.51 Aligned_cols=66 Identities=15% Similarity=0.129 Sum_probs=41.4
Q ss_pred CCCCccccHHHHHHHhhh--------------hcCCCCCCCChHHH-HHHHHHHHHHH----hcCCCCCcceehhceecc
Q 026492 82 KLNRVEMSIWECCELLND--------------VVDESDPDLDEPQI-EHLLQTAEAIR----KDYPDEDWLHLTGLIHDL 142 (238)
Q Consensus 82 ~~~~~~MsI~EA~e~Ln~--------------lVDeSDPD~dlpqi-~H~lQTAEaiR----~d~p~pDW~qLtGliHDL 142 (238)
++.+.--||.+|+-+|=. ..+. .|..++..+ .|.+.+|..++ +-+.+++=.-++||+||+
T Consensus 62 ~~~~~i~si~~Av~~LG~~~l~~l~~~~~~~~~~~~-~~~~~~~~~~~hs~~~a~~a~~la~~~~~~~~~~~~agLLhdi 140 (275)
T 3m1t_A 62 GCSREVGTIDDAVVRLGMQTLRTLVIASAVVGAVPK-VEGFDLADFWGNTFEVAIICQELAKRLGTLPEEAFTCGILHSI 140 (275)
T ss_dssp ----CCCSHHHHHHHHCHHHHHHHHHHHHHHHHCCC-CTTCCHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHTTH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHccC-CCccCHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHc
Confidence 345566788888776531 2222 233454444 79999887754 334456778899999999
Q ss_pred cccccc
Q 026492 143 GKVLNL 148 (238)
Q Consensus 143 GKvl~~ 148 (238)
||++..
T Consensus 141 Gkl~l~ 146 (275)
T 3m1t_A 141 GELLIV 146 (275)
T ss_dssp HHHHHH
T ss_pred cHHHHH
Confidence 999853
No 14
>2pjq_A Uncharacterized protein LP_2664; LPR71, NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactobacillus plantarum WCFS1} SCOP: a.211.1.1
Probab=80.79 E-value=0.74 Score=38.96 Aligned_cols=58 Identities=7% Similarity=0.052 Sum_probs=39.5
Q ss_pred ccHHHHHHHhhhhcCCCCCCCChHHHHHHHHHHHHHHh-cCCCCCcceehhceeccccc
Q 026492 88 MSIWECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRK-DYPDEDWLHLTGLIHDLGKV 145 (238)
Q Consensus 88 MsI~EA~e~Ln~lVDeSDPD~dlpqi~H~lQTAEaiR~-d~p~pDW~qLtGliHDLGKv 145 (238)
+-|.++.+.+...+...++.-++.-+.-.++.|..|.+ .+.+++-+.+.+|+||+||.
T Consensus 10 ~~i~~~~~~v~~~~~~~~~~H~~~H~~rV~~~a~~ia~~~~~d~~ll~lAAlLHDigk~ 68 (231)
T 2pjq_A 10 TQLTAIQTYALQKLAHDHSGHGRDHLQRVNRLARRLAKDEGANLNLTLAAAWLHDVIDD 68 (231)
T ss_dssp HHHHHHHHHHHTSSTTCCSSCSHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHcCCcc
Confidence 34556666666666655666666555555666666665 34577788999999999994
No 15
>2pq7_A Predicted HD superfamily hydrolase; 104161995, HD domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.45A {Uncultured thermotogales bacterium} SCOP: a.211.1.1
Probab=74.26 E-value=2.2 Score=35.18 Aligned_cols=53 Identities=21% Similarity=0.191 Sum_probs=32.0
Q ss_pred HHHHHHHhhhhcCCCCCCCChHHHHHHHHHHH---HHHh-cCCCCCcceehhceeccccc
Q 026492 90 IWECCELLNDVVDESDPDLDEPQIEHLLQTAE---AIRK-DYPDEDWLHLTGLIHDLGKV 145 (238)
Q Consensus 90 I~EA~e~Ln~lVDeSDPD~dlpqi~H~lQTAE---aiR~-d~p~pDW~qLtGliHDLGKv 145 (238)
+.++.+.+.......++..++ .|.+.++. .|-+ .+.+++-+.+.||+||+|+-
T Consensus 15 ~~~~~~~v~~~~~~~~~~h~~---~H~~rV~~~a~~la~~~~~d~~~l~~AaLLHDIg~~ 71 (220)
T 2pq7_A 15 REILNIVREAFKDYDDPAHDI---SHTFRVMENASEIASREKCDLQKAIIAALLHDIKRP 71 (220)
T ss_dssp HHHHHHHHHHHTTCCCTTTSH---HHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHHHHHhcCCCchhH---HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHcCCCc
Confidence 344445555555444455555 55555544 4433 34466778999999999874
No 16
>2l3i_A Aoxki4A, antimicrobial peptide in spider venom; antimicrobial protein; NMR {Araneae}
Probab=72.58 E-value=3.1 Score=26.04 Aligned_cols=26 Identities=12% Similarity=0.073 Sum_probs=23.4
Q ss_pred cccccchhHHHHHHHHHHhHhhhccc
Q 026492 208 MMSWGHDDYMYLVKNLQAFIKSYFSI 233 (238)
Q Consensus 208 ~mSWGHDEYlY~VlkeaL~mIRyHSF 233 (238)
--||--..+--+|+|.-|+|+|-|.|
T Consensus 5 pkswkckafkqrvlkrllamlrqhaf 30 (30)
T 2l3i_A 5 PKSWKCKAFKQRVLKRLLAMLRQHAF 30 (30)
T ss_dssp SSCSCCCHHHHHHHHHHHHHHHTCCC
T ss_pred CcchhHHHHHHHHHHHHHHHHHHhcC
Confidence 35899899999999999999999987
No 17
>3kq5_A Hypothetical cytosolic protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Coxiella burnetii}
Probab=65.12 E-value=1.4 Score=41.79 Aligned_cols=34 Identities=15% Similarity=0.230 Sum_probs=26.0
Q ss_pred HHHHHH-H---HHHHHhcCCCC-----Ccceehhceecccccc
Q 026492 113 IEHLLQ-T---AEAIRKDYPDE-----DWLHLTGLIHDLGKVL 146 (238)
Q Consensus 113 i~H~lQ-T---AEaiR~d~p~p-----DW~qLtGliHDLGKvl 146 (238)
++|.|. + |.++++.||.- +=+-..||+||+||++
T Consensus 77 LeHtLerVa~~A~~l~~~YP~~~~~Er~~l~~aALLHDIGKl~ 119 (393)
T 3kq5_A 77 MNEGLLRGVNSLNHYIQNHPEATPLERYALFSAGLLLEVAHAV 119 (393)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHTTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhccchhe
Confidence 689988 5 66788999631 1346678999999997
No 18
>3sk9_A Putative uncharacterized protein TTHB187; crispr, CAS, HD domain, nuclease, hydrolase; 1.80A {Thermus thermophilus HB8} PDB: 3skd_A
Probab=64.00 E-value=1.8 Score=38.04 Aligned_cols=42 Identities=31% Similarity=0.373 Sum_probs=30.7
Q ss_pred ChHHHHHHHHHHHHHHhc----------------CCC----CCcceehhceeccccccccCCCC
Q 026492 109 DEPQIEHLLQTAEAIRKD----------------YPD----EDWLHLTGLIHDLGKVLNLPSFG 152 (238)
Q Consensus 109 dlpqi~H~lQTAEaiR~d----------------~p~----pDW~qLtGliHDLGKvl~~p~fg 152 (238)
..|-+.|++-||+..+.- +.. ..|+...|++||+||.- |.|.
T Consensus 23 ~~~L~~HllDvAava~~L~~~~~~~~r~~la~~~g~~~~~~~~~~~~~~~lHDiGK~~--~~fq 84 (265)
T 3sk9_A 23 FHPLLAHMLDTAAVALAVLRMEPPRTRALYAEDWGLPEEGALAWAAALVGLHDLGKAS--PVFQ 84 (265)
T ss_dssp TSBHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHTSCHHHHHHHHHHHHTTTTGGGCS--GGGC
T ss_pred cccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccccc--HHHH
Confidence 366789999999885541 211 25888899999999995 4564
No 19
>1ckk_B Camkk, protein (RAT Ca2+/calmodulin dependent protein kinase); complex (calmodulin/peptide), calmodulin-peptide complex; NMR {Rattus norvegicus}
Probab=62.68 E-value=2.2 Score=26.32 Aligned_cols=14 Identities=7% Similarity=-0.304 Sum_probs=11.5
Q ss_pred HHhHhhhcccccCC
Q 026492 224 QAFIKSYFSILLNL 237 (238)
Q Consensus 224 aL~mIRyHSFYp~~ 237 (238)
+=.|+|.|||+-|+
T Consensus 13 vk~Mlr~~sf~nPf 26 (26)
T 1ckk_B 13 VKSMLRKRSFGNPF 26 (26)
T ss_dssp HHHHCSSSCCCCCC
T ss_pred HHHHhhcccccCCC
Confidence 34799999999885
No 20
>1vqr_A Hypothetical protein CJ0248; HD-domain/pdease-like fold, structural genomics, joint cente structural genomics, JCSG; 2.25A {Campylobacter jejuni subsp} SCOP: a.211.1.3
Probab=62.44 E-value=2.3 Score=36.62 Aligned_cols=69 Identities=20% Similarity=0.162 Sum_probs=41.1
Q ss_pred HhcCCCCccccHHHHHHHhhh-----h------cCC--CCC---CCChH-HHHHHHHHHHHHHhcC-----CCCCcceeh
Q 026492 79 EYGKLNRVEMSIWECCELLND-----V------VDE--SDP---DLDEP-QIEHLLQTAEAIRKDY-----PDEDWLHLT 136 (238)
Q Consensus 79 ~~~~~~~~~MsI~EA~e~Ln~-----l------VDe--SDP---D~dlp-qi~H~lQTAEaiR~d~-----p~pDW~qLt 136 (238)
-+.++.+.--||.+|+.+|-. + .+. +++ ..+.. -..|.+.+|..+++-. .+++=.-+.
T Consensus 75 ~~~~~~~~i~si~~Av~~LG~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~hs~~va~~a~~la~~~~~~~~e~a~~a 154 (297)
T 1vqr_A 75 PYYGFTREITTINQVITLLGVGNIINIVMADSIRDNFKIDVSPYGLNTQNFLKTCNEEATFIANWLNDEDKKLSHLLVPC 154 (297)
T ss_dssp GGGTCTTCCCSHHHHHHHHCHHHHHHHHHCCCTTCCCCCCCGGGTCCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred cccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 344566666889999877642 1 111 111 12222 3478877777655332 123455789
Q ss_pred hceeccccccc
Q 026492 137 GLIHDLGKVLN 147 (238)
Q Consensus 137 GliHDLGKvl~ 147 (238)
||+||+||+..
T Consensus 155 GLLHDIGkl~l 165 (297)
T 1vqr_A 155 AMLLRLGIVIF 165 (297)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHccHHHH
Confidence 99999999985
No 21
>3tm8_A BD1817, uncharacterized protein; HD-GYP, phosphodiesterase, unknown function, hydrolase,signa protein; 1.28A {Bdellovibrio bacteriovorus} PDB: 3tmb_A 3tmc_A 3tmd_A
Probab=55.12 E-value=5 Score=35.48 Aligned_cols=36 Identities=22% Similarity=0.147 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHH----hcCCCCCc----ceehhceeccccccc
Q 026492 112 QIEHLLQTAEAIR----KDYPDEDW----LHLTGLIHDLGKVLN 147 (238)
Q Consensus 112 qi~H~lQTAEaiR----~d~p~pDW----~qLtGliHDLGKvl~ 147 (238)
-..|.+.+|...+ +-+-.++. +-+.||+||+||+..
T Consensus 167 ~~~Hs~~Va~la~~la~~lgl~~~~~~~~l~~aaLLHDIGk~~i 210 (328)
T 3tm8_A 167 ISHHGVTVSTLSIALAQKLGITDPKKTQLLTLGALLHDYGHHHS 210 (328)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTTGGGTTC
T ss_pred HHHHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHhcCCcccC
Confidence 3589999887643 22323444 335999999999863
No 22
>3m5f_A Metal dependent phosphohydrolase; CAS3, prokaryotic immune system, HD-motif, structural genomics, PSI-2; 2.30A {Methanocaldococcus jannaschii} PDB: 3s4l_A
Probab=45.82 E-value=6.6 Score=34.88 Aligned_cols=17 Identities=24% Similarity=0.579 Sum_probs=14.0
Q ss_pred Ccceehhceeccccccc
Q 026492 131 DWLHLTGLIHDLGKVLN 147 (238)
Q Consensus 131 DW~qLtGliHDLGKvl~ 147 (238)
+++-++++.||+||.-.
T Consensus 57 ~ll~~a~llHDiGKa~~ 73 (244)
T 3m5f_A 57 EFMKILIKLHDIGKASK 73 (244)
T ss_dssp HHHHHHHHHTTGGGGBH
T ss_pred HHHHHHHHHcccccCCH
Confidence 45678999999999873
No 23
>3mem_A Putative signal transduction protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.25A {Marinobacter aquaeolei}
Probab=44.26 E-value=3.8 Score=38.00 Aligned_cols=69 Identities=14% Similarity=0.159 Sum_probs=41.3
Q ss_pred hcCCCCccccHHHHHH-Hh--h---h------hcC---CC-CCCCCh-HHHHHHHHHHHHHHh---cC-----CCCCcce
Q 026492 80 YGKLNRVEMSIWECCE-LL--N---D------VVD---ES-DPDLDE-PQIEHLLQTAEAIRK---DY-----PDEDWLH 134 (238)
Q Consensus 80 ~~~~~~~~MsI~EA~e-~L--n---~------lVD---eS-DPD~dl-pqi~H~lQTAEaiR~---d~-----p~pDW~q 134 (238)
|.++.+.--||.+|+- +| + + +.+ .+ +...+. .-..|.+.+|..++. .. ++++=.-
T Consensus 230 ~y~~~~~I~si~~Av~rlLG~~~v~~l~~~~~l~~~~~~~~~~~~~~~~~w~hs~~~A~~a~~LA~~~~~~~~~~~~~af 309 (457)
T 3mem_A 230 FYAAAGRVHSVHDAVSRVLGFDLVMNLAMGLALGRALKHPQDHPDGYVDYWQQAIWQAQSAGILASMMPRGQRPLFGLAY 309 (457)
T ss_dssp TTGGGCCCCCHHHHHHTTTCHHHHHHHHHHHHHHTTSCCCSCCCTTSCCHHHHHHHHHHHHHHHHHHSCGGGCCCHHHHH
T ss_pred ccCCCCCCCCHHHHHHHHhcHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHH
Confidence 3345566789999987 32 1 1 112 11 111121 235899988877552 21 2334567
Q ss_pred ehhceecccccccc
Q 026492 135 LTGLIHDLGKVLNL 148 (238)
Q Consensus 135 LtGliHDLGKvl~~ 148 (238)
++||+||+||++..
T Consensus 310 laGLLhDIGkl~l~ 323 (457)
T 3mem_A 310 LAGLLHNFGHLVLA 323 (457)
T ss_dssp HHHHHTTTHHHHHH
T ss_pred HHHHHHHhhHHHHH
Confidence 99999999999853
No 24
>3gw7_A Uncharacterized protein YEDJ; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Escherichia coli k-12}
Probab=38.08 E-value=9.9 Score=32.77 Aligned_cols=41 Identities=20% Similarity=0.182 Sum_probs=24.0
Q ss_pred CCCCChHHHHHHHHHHHHHHh-cCCCCCcceehhceeccccc
Q 026492 105 DPDLDEPQIEHLLQTAEAIRK-DYPDEDWLHLTGLIHDLGKV 145 (238)
Q Consensus 105 DPD~dlpqi~H~lQTAEaiR~-d~p~pDW~qLtGliHDLGKv 145 (238)
++.-++.-+.-.+.+|..|-+ .+.+++-+.+.+|+||+||.
T Consensus 22 ~~~H~~~H~~rV~~~a~~ia~~~~~d~~~~~~AalLHDig~~ 63 (239)
T 3gw7_A 22 DAAHDVCHFRRVWATAQKLAADDDVDMLVILTACYFHDIVSL 63 (239)
T ss_dssp -----CCHHHHHHHHHHHHTTTSCSCTTHHHHHHHHTTTTC-
T ss_pred CCCccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhcccc
Confidence 344445444444555555543 34577888999999999996
No 25
>1iq5_B Ca2+/calmodulin dependent kinase kinase; EF-hand, protein-peptide complex, metal binding protein/protein binding complex; 1.80A {Xenopus laevis}
Probab=37.05 E-value=15 Score=22.71 Aligned_cols=15 Identities=0% Similarity=-0.305 Sum_probs=12.2
Q ss_pred HHhHhhhcccccCCC
Q 026492 224 QAFIKSYFSILLNLD 238 (238)
Q Consensus 224 aL~mIRyHSFYp~~~ 238 (238)
+=.|+|=|||+-|+.
T Consensus 13 vk~Ml~~~sf~nPf~ 27 (27)
T 1iq5_B 13 VKAMGHRKRFGNPFR 27 (27)
T ss_dssp HHHHHHHTSSSCSCC
T ss_pred HHHHHhcccccCCCC
Confidence 346999999999874
No 26
>2hek_A Hypothetical protein; predominantly alpha helical protein with GDP binding site AN site being FAR from EACH other, structural genomics, PSI; HET: GDP; 2.00A {Aquifex aeolicus} SCOP: a.211.1.1
Probab=36.20 E-value=13 Score=33.98 Aligned_cols=37 Identities=30% Similarity=0.418 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHh----cCCCC-Ccceehhceeccccccc
Q 026492 111 PQIEHLLQTAEAIRK----DYPDE-DWLHLTGLIHDLGKVLN 147 (238)
Q Consensus 111 pqi~H~lQTAEaiR~----d~p~p-DW~qLtGliHDLGKvl~ 147 (238)
...+|.+.+|...|+ .+-++ .-..++||+||+|+...
T Consensus 50 ~r~~Hsl~V~~~a~~ia~~~~~~~~~~~~~AaLLHDiG~~pf 91 (371)
T 2hek_A 50 TRFEHSLGVYHITERICESLKVKEKELVKLAGLLHDLGHPPF 91 (371)
T ss_dssp BHHHHHHHHHHHHHHHHHHHTCTTHHHHHHHHHTTTTTCCSS
T ss_pred ChhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc
Confidence 356898888887654 22222 35789999999999763
No 27
>3nqw_A CG11900; stringent response, pyrophosphohydrolase, HD (histidine and acid) family ,PPGPP hydrolase, hydrolase; 2.90A {Drosophila melanogaster}
Probab=34.09 E-value=32 Score=28.24 Aligned_cols=54 Identities=17% Similarity=0.296 Sum_probs=32.4
Q ss_pred HHHHHHHhhhhcCCCCC-C-CChHHHHHHHHHHHHHHhcCCCCCc-ceehhceeccc
Q 026492 90 IWECCELLNDVVDESDP-D-LDEPQIEHLLQTAEAIRKDYPDEDW-LHLTGLIHDLG 143 (238)
Q Consensus 90 I~EA~e~Ln~lVDeSDP-D-~dlpqi~H~lQTAEaiR~d~p~pDW-~qLtGliHDLG 143 (238)
|.+|+++-.......-. + ...|-|.|.+.+|+.+..+..-.|. ...+||+||.=
T Consensus 9 l~~A~~~A~~~H~gQ~rk~~~G~pyi~Hpl~VA~ila~~l~~~D~~~i~AAlLHDvv 65 (179)
T 3nqw_A 9 FMECLQYAAFKHRQQRRKDPQETPYVNHVINVSTILSVEACITDEGVLMAALLHDVV 65 (179)
T ss_dssp HHHHHHHHHHHSTTCBCSSSSCCBTHHHHHHHHHHHHTTTCCCCHHHHHHHHTTTHH
T ss_pred HHHHHHHHHHHhccCcCCCCCCCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhHH
Confidence 34444444443332221 2 4577899999999999855422244 34689999863
No 28
>2wzo_A Transforming growth factor beta regulator 1; nucleus, cell cycle, tumor suppressor; 1.60A {Homo sapiens}
Probab=33.99 E-value=13 Score=29.54 Aligned_cols=32 Identities=28% Similarity=0.617 Sum_probs=21.7
Q ss_pred ceehhc-eeccccccccCCCCCCCCeeeecCceeeccc
Q 026492 133 LHLTGL-IHDLGKVLNLPSFGGLPQWAVVGDTFPVGCA 169 (238)
Q Consensus 133 ~qLtGl-iHDLGKvl~~p~fg~~~QWavvGdTfpVGC~ 169 (238)
+.+.+| ||.||+|+. +.+-|..-.-.||||=.
T Consensus 7 ~~~g~l~v~slG~i~~-----~~~~fh~~~~IyPvGy~ 39 (146)
T 2wzo_A 7 IGLGGLTVYSLGEIIT-----DRPGFHDESAIYPVGYC 39 (146)
T ss_dssp EEETTEEEEEEEECCC-----SSGGGBCSSCBCCEEEE
T ss_pred EEECCEEEEEeeeEcc-----CCCCccCCCceeCCCEE
Confidence 345566 999999993 23446555668999843
No 29
>3nr1_A HD domain-containing protein 3; stringent response, pyrophosphohydrolase, HD (histidine and acid) family, PPGPP hydrolase, hydrolase; 1.90A {Homo sapiens}
Probab=31.41 E-value=34 Score=28.13 Aligned_cols=35 Identities=23% Similarity=0.303 Sum_probs=25.5
Q ss_pred ChHHHHHHHHHHHHHHhcCCCCCc-ceehhceeccc
Q 026492 109 DEPQIEHLLQTAEAIRKDYPDEDW-LHLTGLIHDLG 143 (238)
Q Consensus 109 dlpqi~H~lQTAEaiR~d~p~pDW-~qLtGliHDLG 143 (238)
..|-|.|.+.+|+.+..+..-.|. ...+||+||.=
T Consensus 28 G~PYi~Hpl~VA~il~~~~~~~d~~~i~AALLHDvv 63 (178)
T 3nr1_A 28 GTPYINHPIGVARILTHEAGITDIVVLQAALLHDTV 63 (178)
T ss_dssp CCBTTHHHHHHHHHHHHTSCCCCHHHHHHHHHTTHH
T ss_pred CCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhHH
Confidence 467799999999999655422354 46789999863
No 30
>4dmb_A HD domain-containing protein 2; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium (NESG); HET: MSE GOL; 1.90A {Homo sapiens}
Probab=28.60 E-value=11 Score=32.07 Aligned_cols=41 Identities=22% Similarity=0.272 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHhcCC-CCCc--ceehhceeccccccccCCCCCCCCeeeecCceee
Q 026492 113 IEHLLQTAEAIRKDYP-DEDW--LHLTGLIHDLGKVLNLPSFGGLPQWAVVGDTFPV 166 (238)
Q Consensus 113 i~H~lQTAEaiR~d~p-~pDW--~qLtGliHDLGKvl~~p~fg~~~QWavvGdTfpV 166 (238)
-+|.+++|-..---.+ .-|+ .-..+|+|||+.++ +||+.|+
T Consensus 47 AEHS~~vAliA~~l~~~~vD~~r~~~maL~HDl~E~~-------------tGDitp~ 90 (204)
T 4dmb_A 47 SDHMYRMAVMAMVIKDDRLNKDRCVRLALVHDMAECI-------------VGDIAPA 90 (204)
T ss_dssp HHHHHHHHHHHHHSCCTTSCHHHHHHHHHHTTTTHHH-------------HCCCCGG
T ss_pred HHHHHHHHHHHHHHccccCCHHHHHHHHHhcchHHhh-------------cCCCccc
Confidence 5888888876443221 2343 35678999999877 5788665
No 31
>1ynb_A Hypothetical protein AF1432; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 1.76A {Archaeoglobus fulgidus} SCOP: a.211.1.1 PDB: 1yoy_A
Probab=27.34 E-value=15 Score=30.50 Aligned_cols=33 Identities=24% Similarity=0.244 Sum_probs=23.6
Q ss_pred HHHHHHHHHH---HHhcCCCCCc-----ceehhceecccccc
Q 026492 113 IEHLLQTAEA---IRKDYPDEDW-----LHLTGLIHDLGKVL 146 (238)
Q Consensus 113 i~H~lQTAEa---iR~d~p~pDW-----~qLtGliHDLGKvl 146 (238)
-+|.+++|-. +-. ++.-|+ .-..+|+||++.+.
T Consensus 40 AeHS~~vA~iA~~la~-~~~vd~~~~~r~~~maL~HDl~E~~ 80 (173)
T 1ynb_A 40 AEHNFRAAIIAFILAL-KSGESVEKACKAATAALFHDLHEAR 80 (173)
T ss_dssp HHHHHHHHHHHHHHHH-HTTCCHHHHHHHHHHHHHTTTTHHH
T ss_pred HHHHHHHHHHHHHHhh-hcCCChhHHHHHHHHHHHcchHHhh
Confidence 5888888875 332 234676 35679999999987
No 32
>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*
Probab=26.34 E-value=59 Score=30.30 Aligned_cols=51 Identities=16% Similarity=0.146 Sum_probs=36.2
Q ss_pred HHHHHHHhcCCCCccccHHHHHHHhhhhcCC-------CCCCCChHHHHHHHHHHHHH
Q 026492 73 VKKMREEYGKLNRVEMSIWECCELLNDVVDE-------SDPDLDEPQIEHLLQTAEAI 123 (238)
Q Consensus 73 v~~~~~~~~~~~~~~MsI~EA~e~Ln~lVDe-------SDPD~dlpqi~H~lQTAEai 123 (238)
+++...+|.+.-|.+-++.+|++.|..|-.+ .+...+.-.+.+++.+|+.|
T Consensus 443 l~~~m~~~~gi~R~~~~L~~a~~~l~~l~~~~~~~~~~~~~~~~~~e~~~~~~~a~~~ 500 (540)
T 1chu_A 443 LRLFMWDYVGIVRTTKRLERALRRITMLQQEIDEYYAHFRVSNNLLELRNLVQVAELI 500 (540)
T ss_dssp HHHHHHHHSSSSBCHHHHHHHHHHHHHHHHHHHHHHTTBCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCcccCHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHH
Confidence 4556667788888888999999999876422 12222344678999999984
No 33
>2dqb_A Deoxyguanosinetriphosphate triphosphohydrolase, P; dntpase, DNTP, single-stranded DNA, DNA dGTPase, HD superfamily, structural genomics; 2.20A {Thermus thermophilus}
Probab=24.83 E-value=18 Score=33.44 Aligned_cols=34 Identities=32% Similarity=0.402 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHH----hcCCCCCcceehhceeccccc
Q 026492 112 QIEHLLQTAEAIR----KDYPDEDWLHLTGLIHDLGKV 145 (238)
Q Consensus 112 qi~H~lQTAEaiR----~d~p~pDW~qLtGliHDLGKv 145 (238)
.++|-+-+|...| +-+-+++-....||+||+|+.
T Consensus 76 Rl~HSl~Va~iar~ia~~l~l~~~l~~~a~LlHDiGh~ 113 (376)
T 2dqb_A 76 RLTHTLEVAQVSRSIARALGLNEDLTEAIALSHDLGHP 113 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHTTTTCC
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCC
Confidence 4456665555433 233345667889999999985
No 34
>2paq_A 5'-deoxynucleotidase YFBR; HD domain phosphoh structural genomics, PSI, protein structure initiative, MID center for structural genomics, MCSG; 2.10A {Escherichia coli} SCOP: a.211.1.1 PDB: 2par_A* 2pau_A*
Probab=23.39 E-value=22 Score=29.66 Aligned_cols=35 Identities=29% Similarity=0.396 Sum_probs=23.6
Q ss_pred HHHHHHHHHH---HH----hcC-CCCCcc--eehhceeccccccc
Q 026492 113 IEHLLQTAEA---IR----KDY-PDEDWL--HLTGLIHDLGKVLN 147 (238)
Q Consensus 113 i~H~lQTAEa---iR----~d~-p~pDW~--qLtGliHDLGKvl~ 147 (238)
.+|.+++|-. +- +.. +.-|+- .+.||+||+|+++.
T Consensus 33 aeHS~~VA~lA~~la~~~~~~~~~~vD~~~~~~~aLlHDi~E~~~ 77 (201)
T 2paq_A 33 SEHSLQVAMVAHALAAIKNRKFGGNVNAERIALLAMYHDASEVLT 77 (201)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHTTTTHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHhcCcccCHHHHHHHHHhcccccccC
Confidence 5899998865 21 222 234544 56699999999984
No 35
>1vj7_A Bifunctional RELA/SPOT; HD domain, alpha beta 2-layer sandwich, helix bundle, mangan PPG2':3'P, (P)PPGPP, PPGPP; HET: GDP GPX; 2.10A {Streptococcus dysgalactiae subsp} SCOP: a.211.1.1 d.218.1.8
Probab=22.96 E-value=37 Score=31.59 Aligned_cols=53 Identities=19% Similarity=0.131 Sum_probs=33.7
Q ss_pred HHHHHHHhhhhcCCCCCCCChHHHHHHHHHHHHHHhcCCCCCcceehhceeccc
Q 026492 90 IWECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRKDYPDEDWLHLTGLIHDLG 143 (238)
Q Consensus 90 I~EA~e~Ln~lVDeSDPD~dlpqi~H~lQTAEaiR~d~p~pDW~qLtGliHDLG 143 (238)
|.+|+++-.......-.....|-|.|.+.+|+.+..-+-+++ ...+||+||.-
T Consensus 28 l~~A~~~A~~aH~gQ~rksGePYi~Hpl~VA~iLa~l~~D~~-~i~AALLHDvv 80 (393)
T 1vj7_A 28 VKKALDYATAAHFYQVRKSGEPYIVHPIQVAGILADLHLDAV-TVACGFLHDVV 80 (393)
T ss_dssp HHHHHHHHHHHTTTCBCTTSCBTTHHHHHHHHHHHHTTCCHH-HHHHHHHTTHH
T ss_pred HHHHHHHHHHHhccCcCCCCCcHHHHHHHHHHHHHHhcCCHH-HHHHHHhhhHH
Confidence 445555544433222223346779999999999987664333 46789999853
No 36
>3aql_A Poly(A) polymerase; transferase/RNA, ATP-binding, nucleotide-binding, RNA-bindin transferase, nucleotidyltransferase, ATP binding, A-phospho; 3.00A {Escherichia coli} PDB: 3aqn_A* 3aqk_A 3aqm_A
Probab=22.40 E-value=22 Score=32.89 Aligned_cols=36 Identities=17% Similarity=0.238 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHH-HHhcCCCCCcceehhcee-cccccc
Q 026492 111 PQIEHLLQTAEA-IRKDYPDEDWLHLTGLIH-DLGKVL 146 (238)
Q Consensus 111 pqi~H~lQTAEa-iR~d~p~pDW~qLtGliH-DLGKvl 146 (238)
...+|.+++.+. |..+-+.+.++-|++|+| |+||-.
T Consensus 266 ~v~~h~L~~~d~~i~~~~~~~~~L~lAALLH~di~K~~ 303 (415)
T 3aql_A 266 RIIEQVLKNTDTRIHNDMRVNPAFLFAAMFWYPLLETA 303 (415)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHhHhcCcchhhhh
Confidence 456888887554 666666677899999999 999953
No 37
>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}
Probab=20.88 E-value=73 Score=28.91 Aligned_cols=39 Identities=8% Similarity=0.017 Sum_probs=29.8
Q ss_pred HHHHHHHhcCCCCccccHHHHHHHhhhhcCCCCCCCChHHHHHHHHHHHHH
Q 026492 73 VKKMREEYGKLNRVEMSIWECCELLNDVVDESDPDLDEPQIEHLLQTAEAI 123 (238)
Q Consensus 73 v~~~~~~~~~~~~~~MsI~EA~e~Ln~lVDeSDPD~dlpqi~H~lQTAEai 123 (238)
.++...+|.+.-|.+-++.+|++.|+.|-.+ ++++|+.|
T Consensus 398 l~~~m~~~~g~~r~~~~l~~~~~~~~~~~~~------------~~~~a~~~ 436 (472)
T 2e5v_A 398 IRRINWENVGIIRNEEKLVKAINTYSSSTQN------------EAIISYLT 436 (472)
T ss_dssp HHHHHHHHSSSSBCHHHHHHHHHHHTTCCCH------------HHHHHHHH
T ss_pred HHHHHHHhcCcccCHHHHHHHHHHHHHHHHH------------HHHHHHHH
Confidence 3445566778889999999999999988542 77777764
Done!