BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 026494
         (238 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P16273|PRPX_HORVU Pathogen-related protein OS=Hordeum vulgare PE=2 SV=2
          Length = 235

 Score =  253 bits (647), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 130/237 (54%), Positives = 161/237 (67%), Gaps = 7/237 (2%)

Query: 1   MASPSFNGDKYRSYLHGEEEKNTKWRFGSAPNYDVVDKLFEEGRTKVWPPGSLEEKVQNL 60
           MAS    GDKYRS+LHG+ EK T WR G+ PNYD+V+KLFEE RTK W  GS+EEKVQ L
Sbjct: 1   MASAEGGGDKYRSFLHGDGEKKTVWRHGAPPNYDLVNKLFEEERTKEWAEGSVEEKVQRL 60

Query: 61  VKTWEMEMFHKTCFEDYKSVDPNNYTFSLNGRKPITLEEKRKLGGGYNSFMQTSLPEKYR 120
           +KTWEMEM HK   ED KSV+  NY+ S NG KP+T EE   + GGYN+F+ T+LP ++R
Sbjct: 61  LKTWEMEMVHKVRPEDQKSVNLKNYSASTNGLKPLTREEVMAM-GGYNAFLATTLPPEHR 119

Query: 121 GYNPAEETVESSHIAFTKAFPRGFALEVVHVYSGP--PVIVYKFRHWGYMEGPFKSHAPT 178
            Y+P  E+VES+   F  AFPRGFA+EV+ VYS P  P I +KFRHWGYMEGPFK H P 
Sbjct: 120 IYDPEAESVESATSTFLTAFPRGFAIEVLDVYSSPSAPRIAFKFRHWGYMEGPFKGHPPH 179

Query: 179 GDLVELYGIAIFEVDEQMKIVKVEFFLDRGELLGGLMKLKGDNSCGEEEALSCPFLR 235
           G  VE +G+ +F VDE  K+ K EFF +RG  L   +     ++     A  CP +R
Sbjct: 180 GGRVEFFGVCVFHVDEDTKVEKAEFFYERGNFLASFLTAPAASA----SASGCPVMR 232


>sp|A7U6F1|DPOL_CEV01 DNA polymerase OS=Chrysochromulina ericina virus GN=dpo PE=3 SV=1
          Length = 1623

 Score = 31.2 bits (69), Expect = 6.5,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 46/102 (45%), Gaps = 8/102 (7%)

Query: 17  GEEEKNTKWRFGSAPNYDVVDKLFEEGRTKVWPPGSLEEKVQNLVKTWEMEMFHKTCFED 76
           GE+++N K+ +   P YD +D  ++  +     P +   KV++  KT     F      +
Sbjct: 798 GEKDENGKFIYDELPEYDYIDITYDTFKWIRKTPKAAATKVKSGYKTCRYVQFQN----N 853

Query: 77  YKSVDPNNYTFSLNGRKPITLEEKRKLGGGYNSFMQTSLPEK 118
            K++ P+     L  RK      KR++    + FMQ  L ++
Sbjct: 854 EKAILPSILDELLGARK----STKRQMKNETDPFMQNVLDKR 891


>sp|Q10MN6|P2C33_ORYSJ Probable protein phosphatase 2C 33 OS=Oryza sativa subsp. japonica
           GN=Os03g0301700 PE=2 SV=1
          Length = 432

 Score = 31.2 bits (69), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)

Query: 3   SPSFNGDKYRSYLHGEEEKNTKWRFGS-APNYDVVDKLFEEG 43
           SP  N +K RS L G    ++  + G+ + ++D V++LFEEG
Sbjct: 311 SPKKNQNKLRSLLFGRRSHSSVGKLGNKSASFDSVEELFEEG 352


>sp|Q5LRU1|SYA_RUEPO Alanine--tRNA ligase OS=Ruegeria pomeroyi (strain ATCC 700808 / DSM
           15171 / DSS-3) GN=alaS PE=3 SV=1
          Length = 890

 Score = 31.2 bits (69), Expect = 7.5,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 2/59 (3%)

Query: 25  WRFGSAPNYDVVDKLFEEGRTKVW--PPGSLEEKVQNLVKTWEMEMFHKTCFEDYKSVD 81
           W+ G         ++F +    +W  PPGS EE     ++ W +       FED   VD
Sbjct: 160 WQMGPTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRFIEIWNIVFMQNEKFEDGSMVD 218


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.317    0.137    0.422 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,047,166
Number of Sequences: 539616
Number of extensions: 4455846
Number of successful extensions: 8330
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 8326
Number of HSP's gapped (non-prelim): 7
length of query: 238
length of database: 191,569,459
effective HSP length: 114
effective length of query: 124
effective length of database: 130,053,235
effective search space: 16126601140
effective search space used: 16126601140
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)