Query 026494
Match_columns 238
No_of_seqs 183 out of 205
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 08:45:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026494.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026494hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07366 SnoaL: SnoaL-like pol 99.9 1E-25 2.2E-30 177.0 10.4 118 87-214 9-126 (126)
2 TIGR02096 conserved hypothetic 99.8 5.9E-18 1.3E-22 132.0 12.6 89 125-215 40-129 (129)
3 COG5485 Predicted ester cyclas 99.7 1.5E-17 3.3E-22 135.5 8.3 87 127-215 45-131 (131)
4 PF12680 SnoaL_2: SnoaL-like d 99.0 3.7E-09 8.1E-14 76.9 10.5 68 125-201 35-102 (102)
5 cd00781 ketosteroid_isomerase 98.9 2.6E-09 5.6E-14 82.8 5.7 77 125-211 45-121 (122)
6 PRK08241 RNA polymerase factor 97.9 6.3E-05 1.4E-09 68.8 8.6 59 146-217 276-334 (339)
7 PF10184 DUF2358: Uncharacteri 97.7 0.00059 1.3E-08 54.3 10.7 70 125-201 39-113 (113)
8 COG3631 Ketosteroid isomerase- 97.7 0.00021 4.6E-09 59.1 7.9 124 79-216 8-132 (133)
9 TIGR02960 SigX5 RNA polymerase 97.4 0.0013 2.9E-08 59.5 10.1 111 83-215 211-323 (324)
10 PF07858 LEH: Limonene-1,2-epo 97.3 0.0026 5.5E-08 52.3 10.3 65 143-215 60-124 (125)
11 COG4922 Uncharacterized protei 96.0 0.058 1.3E-06 44.5 8.6 70 125-206 45-114 (129)
12 COG4308 LimA Limonene-1,2-epox 94.6 0.11 2.4E-06 43.0 6.3 74 133-216 53-128 (130)
13 PF03284 PHZA_PHZB: Phenazine 93.5 2 4.4E-05 36.8 11.9 88 124-217 62-151 (162)
14 PRK09636 RNA polymerase sigma 64.2 76 0.0016 28.6 9.9 106 83-210 178-286 (293)
15 PF14534 DUF4440: Domain of un 51.7 47 0.001 23.7 5.3 86 72-194 15-102 (107)
16 PF07310 PAS_5: PAS domain; I 40.4 27 0.00057 28.2 2.7 42 135-182 32-73 (137)
17 PF07107 WI12: Wound-induced p 40.0 68 0.0015 26.1 4.9 59 143-217 13-71 (109)
18 PF01353 GFP: Green fluorescen 34.7 70 0.0015 28.9 4.6 30 135-164 78-107 (219)
19 KOG4457 Uncharacterized conser 33.9 1.5E+02 0.0033 26.3 6.4 56 138-202 93-165 (202)
20 PF05626 DUF790: Protein of un 32.8 3.5E+02 0.0076 26.4 9.4 116 53-216 217-334 (379)
21 PF05404 TRAP-delta: Transloco 25.4 1E+02 0.0022 26.9 3.9 64 83-173 78-141 (167)
22 TIGR03291 methan_mark_17 putat 24.1 1E+02 0.0022 27.3 3.7 30 118-147 123-152 (185)
23 PF09883 DUF2110: Uncharacteri 22.2 68 0.0015 29.2 2.3 32 50-81 15-46 (225)
24 PF10049 DUF2283: Protein of u 22.1 1.9E+02 0.0041 19.7 4.0 28 177-204 20-47 (50)
25 COG4051 Uncharacterized protei 21.2 1.9E+02 0.0042 25.8 4.8 71 52-147 90-160 (202)
26 PF09886 DUF2113: Uncharacteri 20.7 1.3E+02 0.0028 26.6 3.7 84 48-160 80-163 (188)
No 1
>PF07366 SnoaL: SnoaL-like polyketide cyclase; InterPro: IPR009959 This domain is found in SnoaL [] a polyketide cyclase involved in nogalamycin biosynthesis. This domain was formerly known as DUF1486. It adopts a distorted alpha-beta barrel fold []. Structural data together with site-directed mutagenesis experiments have shown that SnoaL has a different mechanism to that of the classical aldolase for catalysing intramolecular aldol condensation [].; PDB: 2GEY_C 3F9S_A 2GEX_A 3EHC_B 2F99_D 2F98_D 1SJW_A 3K0Z_B.
Probab=99.93 E-value=1e-25 Score=176.99 Aligned_cols=118 Identities=24% Similarity=0.309 Sum_probs=99.3
Q ss_pred EEeCCCCCCChHHHHhhcCCcccccccCCCcccCCCCCChhHHHhHHHHHHHhcCCCceeEEEEEEecCCEEEEEEEEEE
Q 026494 87 FSLNGRKPITLEEKRKLGGGYNSFMQTSLPEKYRGYNPAEETVESSHIAFTKAFPRGFALEVVHVYSGPPVIVYKFRHWG 166 (238)
Q Consensus 87 ~s~NGg~~~~~~e~~~~~g~yN~~l~~~l~~~~~~Ydp~~e~f~ss~~~f~~AFPdGf~~EV~eV~s~gp~Vafrwr~~G 166 (238)
..+|.+..-.+++++.. |+..+.+.+.. -.+.+.+++..+.+++|||| ++++|+++++++++|+++|+++|
T Consensus 9 ~~~n~~d~~~~~~~~~~----d~~~~~~~~~~----~~G~~~~~~~~~~~~~afPD-~~~~i~~~~~~gd~v~~~~~~~G 79 (126)
T PF07366_consen 9 EVWNRGDLDALDELVAP----DVVFHDPGPGP----PVGREGFKEFLKELRAAFPD-LRFEIEDVVAEGDRVAVRWTFTG 79 (126)
T ss_dssp HHHHTT-GCHHHGTEEE----EEEEEGCTTTE----EEHHHHHHHHHHHHHHHSTT-TEEEEEEEEEETTEEEEEEEEEE
T ss_pred HHHhCCCHHHHHHhcCC----CEEEEecCCCC----CCCHHHHHHHHHHHHHHCCC-CEEEEEEEEEECCEEEEEEEEEE
Confidence 34466666666666666 55555432111 22578899999999999999 99999999999999999999999
Q ss_pred eeecCCCccCCCCCEEEEEeEEEEEEcCCCeEEEEEEeeCHHHHHHhh
Q 026494 167 YMEGPFKSHAPTGDLVELYGIAIFEVDEQMKIVKVEFFLDRGELLGGL 214 (238)
Q Consensus 167 Th~G~f~GipPTGr~Vei~Gi~i~rv~d~gKIve~~~~~D~~~ll~QL 214 (238)
||+|+|+|+|||||+|++.|++++||++ |||+++|.++|.++|++||
T Consensus 80 th~g~~~g~~ptgk~v~~~~~~~~~~~~-gkI~e~~~~~D~~~~~~QL 126 (126)
T PF07366_consen 80 THTGEFMGIPPTGKPVEFRGMSIFRFED-GKIVEEWVYFDELSLLRQL 126 (126)
T ss_dssp EESSEBTTBE-TTEEEEEEEEEEEEEET-TEEEEEEEEECHHHHHHHT
T ss_pred eecCCcCCcCCCCCEEEEEEEEEEEEEC-CEEEEEEEEECHHHHHhhC
Confidence 9999999999999999999999999999 7999999999999999998
No 2
>TIGR02096 conserved hypothetical protein, steroid delta-isomerase-related. This family of proteins about 135 amino acids in length largely restricted to the Proteobacteria. This family and a delta5-3-ketosteroid isomerase from Pseudomonas testosteroni appear homologous, especially toward their respective N-termini. Members, therefore, probably are enzymes.
Probab=99.77 E-value=5.9e-18 Score=131.97 Aligned_cols=89 Identities=17% Similarity=0.293 Sum_probs=84.0
Q ss_pred ChhHHHhHHHHHHHhcCCCceeEEEEEEecCC-EEEEEEEEEEeeecCCCccCCCCCEEEEEeEEEEEEcCCCeEEEEEE
Q 026494 125 AEETVESSHIAFTKAFPRGFALEVVHVYSGPP-VIVYKFRHWGYMEGPFKSHAPTGDLVELYGIAIFEVDEQMKIVKVEF 203 (238)
Q Consensus 125 ~~e~f~ss~~~f~~AFPdGf~~EV~eV~s~gp-~Vafrwr~~GTh~G~f~GipPTGr~Vei~Gi~i~rv~d~gKIve~~~ 203 (238)
+.+.++..+..|.+++|+ +++++.+++..++ .|++.|+.+|+|.|+|.|+||||+++++.++++++|++ |||+++|.
T Consensus 40 G~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~v~~~~~~~g~~~g~~~g~~~~g~~~~~~~~~~~~~~~-gkI~~~~~ 117 (129)
T TIGR02096 40 GKAQLARFLAPYRTAFPD-LLVDVVVCRNDEGVRVAAEWTVHGTYRTAFLGLPASGKTYSIRGVTFFVFDD-GKIKRETT 117 (129)
T ss_pred cHHHHHHHHHHHHHhCch-hhceeEEEEecCCcEEEEEEEEeeeeccccCCCCCCCCEEEeeeeEEEEEeC-CEEEEEEE
Confidence 477788889999999999 9999999988776 99999999999999999999999999999999999996 79999999
Q ss_pred eeCHHHHHHhhc
Q 026494 204 FLDRGELLGGLM 215 (238)
Q Consensus 204 ~~D~~~ll~QL~ 215 (238)
|||...|++||+
T Consensus 118 y~D~~~~~~qlg 129 (129)
T TIGR02096 118 YYNLATFLRQLG 129 (129)
T ss_pred EecHHHHHHhhC
Confidence 999999999996
No 3
>COG5485 Predicted ester cyclase [General function prediction only]
Probab=99.72 E-value=1.5e-17 Score=135.54 Aligned_cols=87 Identities=16% Similarity=0.171 Sum_probs=82.1
Q ss_pred hHHHhHHHHHHHhcCCCceeEEEEEEecCCEEEEEEEEEEeeecCCCccCCCCCEEEEEeEEEEEEcCCCeEEEEEEeeC
Q 026494 127 ETVESSHIAFTKAFPRGFALEVVHVYSGPPVIVYKFRHWGYMEGPFKSHAPTGDLVELYGIAIFEVDEQMKIVKVEFFLD 206 (238)
Q Consensus 127 e~f~ss~~~f~~AFPdGf~~EV~eV~s~gp~Vafrwr~~GTh~G~f~GipPTGr~Vei~Gi~i~rv~d~gKIve~~~~~D 206 (238)
.+|......-..|||| |.++++.++++||+||.|..+-+|++|.|+||||+||+|.|.-..+++|.+ +||+++|...|
T Consensus 45 sgyr~ml~~df~aiPd-l~f~ie~lvae~~~vaarl~Fdctp~G~i~Gip~nGkrV~Fse~vfy~f~~-~KI~~vwsv~D 122 (131)
T COG5485 45 SGYREMLVRDFSAIPD-LSFEIERLVAEGDRVAARLTFDCTPSGEIMGIPPNGKRVRFSENVFYEFEN-GKIVEVWSVID 122 (131)
T ss_pred HHHHHHHHhhHhhCCC-cceEEEEEeecCCceEEEEEEccCcCceEeccCCCCcEEEeehhhhhhhcC-CeEEeeehhcc
Confidence 4566777777899999 999999999999999999999999999999999999999999999999998 69999999999
Q ss_pred HHHHHHhhc
Q 026494 207 RGELLGGLM 215 (238)
Q Consensus 207 ~~~ll~QL~ 215 (238)
.+++.+||+
T Consensus 123 k~ai~rQL~ 131 (131)
T COG5485 123 KMAIERQLG 131 (131)
T ss_pred HHHHHHhhC
Confidence 999999995
No 4
>PF12680 SnoaL_2: SnoaL-like domain; PDB: 3F40_A 3RGA_A 3G8Z_A 3DMC_A 3FH1_A 1TUH_A 3F14_A 3ER7_A 1Z1S_A 3F7X_A ....
Probab=99.03 E-value=3.7e-09 Score=76.88 Aligned_cols=68 Identities=22% Similarity=0.462 Sum_probs=63.1
Q ss_pred ChhHHHhHHHHHHHhcCCCceeEEEEEEecCCEEEEEEEEEEeeecCCCccCCCCCEEEEEeEEEEEEcCCCeEEEE
Q 026494 125 AEETVESSHIAFTKAFPRGFALEVVHVYSGPPVIVYKFRHWGYMEGPFKSHAPTGDLVELYGIAIFEVDEQMKIVKV 201 (238)
Q Consensus 125 ~~e~f~ss~~~f~~AFPdGf~~EV~eV~s~gp~Vafrwr~~GTh~G~f~GipPTGr~Vei~Gi~i~rv~d~gKIve~ 201 (238)
+++.+.+..+.+...+|+ +.+++.+++++|+.|+++|+..++ .+|||+++.+.++++++|+| |||+++
T Consensus 35 g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~gd~v~~~~~~~~~-------~~~~g~~~~~~~~~~~~~~d-gkI~~~ 102 (102)
T PF12680_consen 35 GREAIREFFEEFFESFPD-IRFEIHDIFADGDRVVVEWTVTGT-------TPPTGQPISFRGCSVFRFED-GKIVEH 102 (102)
T ss_dssp SHHHHHHHHHHHHHHEEE-EEEEEEEEEEETTEEEEEEEEEEE-------ETTTSCEEEEEEEEEEEEET-TEEEEE
T ss_pred CHHHHHHHHHHHHhcCCc-eEEEEEEEEEcCCEEEEEEEEEEE-------EcCCCCEEEEEEEEEEEEEC-CEEEEC
Confidence 667888888888889999 999999999999999999999998 89999999999999999987 799985
No 5
>cd00781 ketosteroid_isomerase ketosteroid isomerase: Many biological reactions proceed by enzymatic cleavage of a C-H bond adjacent to carbonyl or a carboxyl group, leading to an enol or a enolate intermediate that is subsequently re-protonated at the same or an adjacent carbon. Ketosteroid isomerases are important members of this class of enzymes which are the most proficient of all enzymes known and have served as a paradigm for enzymatic enolizations since its discovery in 1954. This CD includes members of this class that calalyze the isomerization of various beta,gamma-unsaturated isomers at nearly a diffusion-controlled rate. These enzymes are widely distributed in bacteria.
Probab=98.90 E-value=2.6e-09 Score=82.76 Aligned_cols=77 Identities=14% Similarity=0.047 Sum_probs=62.4
Q ss_pred ChhHHHhHHHHHHHhcCCCceeEEEEEEecCCEEEEEEEEEEeeecCCCccCCCCCEEEEEeEEEEEEcCCCeEEEEEEe
Q 026494 125 AEETVESSHIAFTKAFPRGFALEVVHVYSGPPVIVYKFRHWGYMEGPFKSHAPTGDLVELYGIAIFEVDEQMKIVKVEFF 204 (238)
Q Consensus 125 ~~e~f~ss~~~f~~AFPdGf~~EV~eV~s~gp~Vafrwr~~GTh~G~f~GipPTGr~Vei~Gi~i~rv~d~gKIve~~~~ 204 (238)
+++.+......+..++++ +.+.+..+++.++.+++.|++.+ +++|+++.+.|+++++|+++|||++++.|
T Consensus 45 G~~~i~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~---------~~~g~~~~~~~~~v~~~~~dGkI~~~~~y 114 (122)
T cd00781 45 GRAAIAAFYAQSLGGAKR-LELTGPVRASHGGEAAFAFRVEF---------EWEGQPCVVRVIDVMRFDADGRIVSMRAY 114 (122)
T ss_pred CHHHHHHHHHHHhccCce-EEecCceeeecCCEEEEEEEEEE---------EeCCceEEEEEEEEEEECCCccChHHHHh
Confidence 455666666666666777 77777778889999999998753 45799999999999999866899999999
Q ss_pred eCHHHHH
Q 026494 205 LDRGELL 211 (238)
Q Consensus 205 ~D~~~ll 211 (238)
||+..|.
T Consensus 115 ~d~~~~~ 121 (122)
T cd00781 115 WGPVNLH 121 (122)
T ss_pred cCccccc
Confidence 9998763
No 6
>PRK08241 RNA polymerase factor sigma-70; Validated
Probab=97.86 E-value=6.3e-05 Score=68.85 Aligned_cols=59 Identities=17% Similarity=0.228 Sum_probs=49.1
Q ss_pred eEEEEEEecCCEEEEEEEEEEeeecCCCccCCCCCEEEEEeEEEEEEcCCCeEEEEEEeeCHHHHHHhhcCC
Q 026494 146 LEVVHVYSGPPVIVYKFRHWGYMEGPFKSHAPTGDLVELYGIAIFEVDEQMKIVKVEFFLDRGELLGGLMKL 217 (238)
Q Consensus 146 ~EV~eV~s~gp~Vafrwr~~GTh~G~f~GipPTGr~Vei~Gi~i~rv~d~gKIve~~~~~D~~~ll~QL~~~ 217 (238)
+.+...+++|+.|++.+.. .++|+.+.+.++.|++|+| |||++++.|+|+ ..|++++..
T Consensus 276 ~~~~~~~~~g~~v~~~~~~-----------~~~g~~~~~~~v~v~~v~d-GkI~~~~~y~d~-~~~~~~~~~ 334 (339)
T PRK08241 276 SRLVPTRANGQPAFAQYMR-----------DPDGGGHRPWALHVLELRG-GRIAHVTSFLDT-TLFPRFGLP 334 (339)
T ss_pred eEEEEeecCCCeEEEEEEE-----------cCCCCeeecceEEEEEEeC-CEEEEEEEEcCh-hhhhhcCCC
Confidence 4555558888888886532 5679999999999999997 799999999999 888988774
No 7
>PF10184 DUF2358: Uncharacterized conserved protein (DUF2358); InterPro: IPR018790 This entry represents a family of conserved proteins. The function is unknown.
Probab=97.70 E-value=0.00059 Score=54.26 Aligned_cols=70 Identities=14% Similarity=0.169 Sum_probs=57.1
Q ss_pred ChhHHHhH---HHHHHH-hcCCCceeEEEEEEecCC-EEEEEEEEEEeeecCCCccCCCCCEEEEEeEEEEEEcCCCeEE
Q 026494 125 AEETVESS---HIAFTK-AFPRGFALEVVHVYSGPP-VIVYKFRHWGYMEGPFKSHAPTGDLVELYGIAIFEVDEQMKIV 199 (238)
Q Consensus 125 ~~e~f~ss---~~~f~~-AFPdGf~~EV~eV~s~gp-~Vafrwr~~GTh~G~f~GipPTGr~Vei~Gi~i~rv~d~gKIv 199 (238)
+.+.++.. .+.+.. .|++ ...+|+++...++ .|.+|||..|.-.-+ -..++.+.|.++++||++|+|.
T Consensus 39 g~~~Y~~~~~~l~~l~~~~~~~-~~~~v~~i~~~~~~~I~~rW~~~g~~~l~------w~p~~~~~G~S~~~ln~~g~I~ 111 (113)
T PF10184_consen 39 GLDRYKRNLWALRFLGRLFFSD-PSLEVLSIEQDGEDTIRARWRLRGVPRLP------WRPRISFDGTSTYTLNSDGLIY 111 (113)
T ss_pred cHHHHHHHHHHHHHHHhhccCC-cEEEEEEEEECCCCEEEEEEEEEEEeCCC------cCCcEEEEEEEEEEECCCCcEE
Confidence 46677777 555555 5778 8999999999998 999999998885544 4567889999999999999998
Q ss_pred EE
Q 026494 200 KV 201 (238)
Q Consensus 200 e~ 201 (238)
++
T Consensus 112 ~H 113 (113)
T PF10184_consen 112 RH 113 (113)
T ss_pred eC
Confidence 75
No 8
>COG3631 Ketosteroid isomerase-related protein [General function prediction only]
Probab=97.66 E-value=0.00021 Score=59.06 Aligned_cols=124 Identities=14% Similarity=0.084 Sum_probs=79.7
Q ss_pred eecccceEEEeCCCCCCChHHHHhhcCCcccccc-cCCCcccCCCCCChhHHHhHHHHHHHhcCCCceeEEEEEEecCCE
Q 026494 79 SVDPNNYTFSLNGRKPITLEEKRKLGGGYNSFMQ-TSLPEKYRGYNPAEETVESSHIAFTKAFPRGFALEVVHVYSGPPV 157 (238)
Q Consensus 79 sv~~~~f~~s~NGg~~~~~~e~~~~~g~yN~~l~-~~l~~~~~~Ydp~~e~f~ss~~~f~~AFPdGf~~EV~eV~s~gp~ 157 (238)
-+.+..|....+| ..+.+.+. ..=|.... +.-++....|.-+.+........+-+.+=+ ...++..++.++|.
T Consensus 8 ~~v~~~f~a~~~G----D~~~~~~l-~a~D~v~~~p~~~~~~~~~~~g~~~~~~~~~~~~r~~~~-~~~~~~~~~~~gD~ 81 (133)
T COG3631 8 DLVRRYFAALSRG----DLDGLLAL-LAEDVVWEVPGTPPLSGTFRGGVAIRRDVFALLPRLIED-GRFTVETVYVSGDP 81 (133)
T ss_pred hHHHHHHHHHhcC----CHHHHHhh-ccCceEEEeeCCCCCccccccchhhhhHHhhhChhhccc-ccccceEEEEcCCc
Confidence 3445566666666 44444444 32233221 001112222222333334444455555534 68899999999999
Q ss_pred EEEEEEEEEeeecCCCccCCCCCEEEEEeEEEEEEcCCCeEEEEEEeeCHHHHHHhhcC
Q 026494 158 IVYKFRHWGYMEGPFKSHAPTGDLVELYGIAIFEVDEQMKIVKVEFFLDRGELLGGLMK 216 (238)
Q Consensus 158 Vafrwr~~GTh~G~f~GipPTGr~Vei~Gi~i~rv~d~gKIve~~~~~D~~~ll~QL~~ 216 (238)
++.-.+.- ..+.+||+.++-.-+.|+++.| |||++.+.|+|+..+..-|+.
T Consensus 82 ~~~v~~~~-------~~~~~~G~~~~~~~~~v~~vrd-GrI~~~~~y~D~~~~~~a~~~ 132 (133)
T COG3631 82 VGAVFRTR-------GRVSRTGKPYENRYAFVIRVRD-GRITRYREYVDTLALAEALGG 132 (133)
T ss_pred eEEEEEec-------CcccccCceeecceEEEEEEeC-CEEEEEEEEechHhHHHHhcC
Confidence 98333331 2379999999999999999999 799999999999999877754
No 9
>TIGR02960 SigX5 RNA polymerase sigma-70 factor, TIGR02960 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family.
Probab=97.39 E-value=0.0013 Score=59.49 Aligned_cols=111 Identities=10% Similarity=0.085 Sum_probs=70.0
Q ss_pred cceEEEeCCCCCCChHHHHhhcCCcccccccCCCcccCCCCCChhHHHhHHHHH--HHhcCCCceeEEEEEEecCCEEEE
Q 026494 83 NNYTFSLNGRKPITLEEKRKLGGGYNSFMQTSLPEKYRGYNPAEETVESSHIAF--TKAFPRGFALEVVHVYSGPPVIVY 160 (238)
Q Consensus 83 ~~f~~s~NGg~~~~~~e~~~~~g~yN~~l~~~l~~~~~~Ydp~~e~f~ss~~~f--~~AFPdGf~~EV~eV~s~gp~Vaf 160 (238)
+.|...+|.|..-.+.++++. ++.+..+.. ... -.+++.+......+ ...+++ +.++ .+++.|+.+++
T Consensus 211 ~~~~~a~~~gD~~~l~~Lla~----Dv~~~~p~~--~~~-~~G~~~v~~~~~~~~~~~~~~~-~~~~--~~~~~g~~~~v 280 (324)
T TIGR02960 211 ERYIAAFESYDLDALTALLHE----DAIWEMPPY--TLW-YQGRPAIVGFIHTVCPGEGAAG-MRLL--PTIANGQPAAA 280 (324)
T ss_pred HHHHHHHHcCCHHHHHHHhcC----CeEEEcCCC--Ccc-eeCHHHHHHHHHHhcccccCCc-eeEE--EeeecCCceEE
Confidence 455666666665555555554 333332100 000 11334444444444 344555 6554 45688888888
Q ss_pred EEEEEEeeecCCCccCCCCCEEEEEeEEEEEEcCCCeEEEEEEeeCHHHHHHhhc
Q 026494 161 KFRHWGYMEGPFKSHAPTGDLVELYGIAIFEVDEQMKIVKVEFFLDRGELLGGLM 215 (238)
Q Consensus 161 rwr~~GTh~G~f~GipPTGr~Vei~Gi~i~rv~d~gKIve~~~~~D~~~ll~QL~ 215 (238)
.|. ..++|+.+.+.|+.+++|.| |||++++.|+|...+++-++
T Consensus 281 ~~~-----------~~~~~~~~~~~~v~~~~~~d-GkI~~~~~~~~~~~~~~~~~ 323 (324)
T TIGR02960 281 MYM-----------RRPDAERHTAFQLHVLEIRG-GRITHVTAFLDGPSLFAAFG 323 (324)
T ss_pred EEE-----------EcCCCCeeeeeEEEEEEEcC-CcEEEEEEEcCCHHHHhhcC
Confidence 774 35679999999999999976 89999999999888876553
No 10
>PF07858 LEH: Limonene-1,2-epoxide hydrolase catalytic domain; InterPro: IPR013100 Epoxide hydrolases catalyse the hydrolysis of epoxides to corresponding diols, which is important in detoxification, synthesis of signal molecules, or metabolism. Limonene-1,2- epoxide hydrolase (LEH) differs from many other epoxide hydrolases in its structure and its novel one-step catalytic mechanism. Its main fold consists of a six-stranded mixed beta-sheet, with three N-terminal alpha helices packed to one side to create a pocket that extends into the protein core. A fourth helix lies in such a way that it acts as a rim to this pocket. Although mainly lined by hydrophobic residues, this pocket features a cluster of polar groups that lie at its deepest point and constitute the enzymes active site []. ; PDB: 2BNG_C 1NWW_A 1NU3_B.
Probab=97.35 E-value=0.0026 Score=52.33 Aligned_cols=65 Identities=17% Similarity=0.232 Sum_probs=51.3
Q ss_pred CceeEEEEEEecCCEEEEEEEEEEeeecCCCccCCCCCEEEEEeEEEEEEcCCCeEEEEEEeeCHHHHHHhhc
Q 026494 143 GFALEVVHVYSGPPVIVYKFRHWGYMEGPFKSHAPTGDLVELYGIAIFEVDEQMKIVKVEFFLDRGELLGGLM 215 (238)
Q Consensus 143 Gf~~EV~eV~s~gp~Vafrwr~~GTh~G~f~GipPTGr~Vei~Gi~i~rv~d~gKIve~~~~~D~~~ll~QL~ 215 (238)
||.++|+.+.++|+.|...=.-. .-++..++++++.-+.+++|.| |||+..+.|||...|++++.
T Consensus 60 ~~e~~i~~iaadg~~VltER~D~-------l~~~dG~~~~~~~V~GvfEv~d-GkI~~WRDYFD~~~~~~a~~ 124 (125)
T PF07858_consen 60 GFEFDIHRIAADGDVVLTERTDV-------LRFADGPLRIQFPVCGVFEVRD-GKITLWRDYFDLADFLKATV 124 (125)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEE-------EEETTTTEEEEEEEEEEEEEET-TEEEEEEEE--HHHHHHHHT
T ss_pred eeEEEEEEEeecCCEEEEEeEee-------eeeecCCeEEEEEEEEEEEEEC-CEEEEEeccCCHHHHHHHhc
Confidence 58999999999998876653332 2234445899999999999998 79999999999999999873
No 11
>COG4922 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.95 E-value=0.058 Score=44.45 Aligned_cols=70 Identities=19% Similarity=0.274 Sum_probs=55.3
Q ss_pred ChhHHHhHHHHHHHhcCCCceeEEEEEEecCCEEEEEEEEEEeeecCCCccCCCCCEEEEEeEEEEEEcCCCeEEEEEEe
Q 026494 125 AEETVESSHIAFTKAFPRGFALEVVHVYSGPPVIVYKFRHWGYMEGPFKSHAPTGDLVELYGIAIFEVDEQMKIVKVEFF 204 (238)
Q Consensus 125 ~~e~f~ss~~~f~~AFPdGf~~EV~eV~s~gp~Vafrwr~~GTh~G~f~GipPTGr~Vei~Gi~i~rv~d~gKIve~~~~ 204 (238)
++++|-.....|.+--|. ....+..++++||.|++...-+ .+-| |.. +..-++++|++| |||+|+|..
T Consensus 45 Gk~~fv~fFt~ffk~~P~-~~~kiVr~iadGdLV~vh~hqt-------~~~p--g~~-~~v~~DtfR~dd-gkivEHWDv 112 (129)
T COG4922 45 GKDGFVRFFTEFFKEKPR-ISTKIVRVIADGDLVTVHYHQT-------VSEP--GSY-TTVTFDTFRIDD-GKIVEHWDV 112 (129)
T ss_pred chHHHHHHHHHHHHhCcc-ccceeeEEeccCCEEEEEEeee-------eCCC--Ccc-eeEEEEEEEeeC-Cceeeccch
Confidence 788999999999999999 8999999999999999876542 1112 332 334578999999 599999875
Q ss_pred eC
Q 026494 205 LD 206 (238)
Q Consensus 205 ~D 206 (238)
-+
T Consensus 113 iq 114 (129)
T COG4922 113 IQ 114 (129)
T ss_pred hh
Confidence 43
No 12
>COG4308 LimA Limonene-1,2-epoxide hydrolase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.64 E-value=0.11 Score=42.99 Aligned_cols=74 Identities=14% Similarity=0.245 Sum_probs=54.1
Q ss_pred HHHHHHhcCC--CceeEEEEEEecCCEEEEEEEEEEeeecCCCccCCCCCEEEEEeEEEEEEcCCCeEEEEEEeeCHHHH
Q 026494 133 HIAFTKAFPR--GFALEVVHVYSGPPVIVYKFRHWGYMEGPFKSHAPTGDLVELYGIAIFEVDEQMKIVKVEFFLDRGEL 210 (238)
Q Consensus 133 ~~~f~~AFPd--Gf~~EV~eV~s~gp~Vafrwr~~GTh~G~f~GipPTGr~Vei~Gi~i~rv~d~gKIve~~~~~D~~~l 210 (238)
...++.-|++ ||++.|+-+-++|..|-..=.- -+.---.-+++.=+.|++|++ +||+.++.|||...|
T Consensus 53 ia~l~~~~~~~~~~ef~I~riAadg~~VltER~D---------~~~~g~~~~~~~V~GvfEV~~-~rI~~WRDYFDv~~l 122 (130)
T COG4308 53 IALLRPRMAGILGFEFKILRIAADGGAVLTERLD---------ARIDGPLWVQFWVCGVFEVED-GRIVLWRDYFDVNDL 122 (130)
T ss_pred hhhhccccCCcceeEEEEEEEecccceehhhhhh---------hhccCCcEEEEEEEEEEEEeC-CEEEeehhhhhHHHH
Confidence 3344435555 6888899888888877543211 122223457899999999998 699999999999999
Q ss_pred HHhhcC
Q 026494 211 LGGLMK 216 (238)
Q Consensus 211 l~QL~~ 216 (238)
+.|...
T Consensus 123 ~k~~~r 128 (130)
T COG4308 123 FKQTPR 128 (130)
T ss_pred HhhccC
Confidence 999754
No 13
>PF03284 PHZA_PHZB: Phenazine biosynthesis protein A/B; InterPro: IPR004964 The phenazine biosynthesis proteins A and B are involved in the biosynthesis of this antibiotic. Phenazine is a nitrogen-containing heterocyclic molecule with important implications in virulence, competition and biological control.; GO: 0017000 antibiotic biosynthetic process; PDB: 3EX9_A 3JUP_B 3DZL_A 3JUN_A 3JUO_A 3CNM_A 3JUM_B 3JUQ_A 3B4O_A 3B4P_B ....
Probab=93.54 E-value=2 Score=36.83 Aligned_cols=88 Identities=19% Similarity=0.215 Sum_probs=64.1
Q ss_pred CChhHHHhHHHHHHHhcCCCceeEEEEEEe--cCCEEEEEEEEEEeeecCCCccCCCCCEEEEEeEEEEEEcCCCeEEEE
Q 026494 124 PAEETVESSHIAFTKAFPRGFALEVVHVYS--GPPVIVYKFRHWGYMEGPFKSHAPTGDLVELYGIAIFEVDEQMKIVKV 201 (238)
Q Consensus 124 p~~e~f~ss~~~f~~AFPdGf~~EV~eV~s--~gp~Vafrwr~~GTh~G~f~GipPTGr~Vei~Gi~i~rv~d~gKIve~ 201 (238)
.+++..........+.||| ..|.-..++- +|+.+.+..+..|+- -|.|.|. | --+-.-|..+++++ |||...
T Consensus 62 ~G~~~L~~havwslkcFPD-WeW~nv~ifeT~DP~~fwVEcdG~G~i--~fpGype-g-~y~NHfiHsFel~n-GkI~~~ 135 (162)
T PF03284_consen 62 RGRDRLAEHAVWSLKCFPD-WEWYNVRIFETQDPNHFWVECDGRGKI--LFPGYPE-G-YYENHFIHSFELEN-GKIKRN 135 (162)
T ss_dssp ESHHHHHHHHHHHHHHSTT--EEEEEEEEEBSSTTEEEEEEEEEEEE----TTS---E-EEEEEEEEEEEEET-TEEEEE
T ss_pred EhHHHHHHHHHHHHHHCCC-cEEEEEEeecccCCCEEEEEecCccce--ecCCCCc-c-cceeeeEEEEEeeC-CEEEee
Confidence 3667777777778899999 8888888875 677888888887774 2344332 1 24666788999998 799999
Q ss_pred EEeeCHHHHHHhhcCC
Q 026494 202 EFFLDRGELLGGLMKL 217 (238)
Q Consensus 202 ~~~~D~~~ll~QL~~~ 217 (238)
+-|+|+.+-|+.|+..
T Consensus 136 REFmNp~qq~RaLgi~ 151 (162)
T PF03284_consen 136 REFMNPFQQLRALGIP 151 (162)
T ss_dssp EEEE-HHHHHHHTT--
T ss_pred hhhcCHHHHHHHcCCC
Confidence 9999999999999874
No 14
>PRK09636 RNA polymerase sigma factor SigJ; Provisional
Probab=64.25 E-value=76 Score=28.59 Aligned_cols=106 Identities=11% Similarity=0.016 Sum_probs=56.5
Q ss_pred cceEEEeCCCCCCChHHHHhhcCCcccccccCCCcccCC-C--CCChhHHHhHHHHHHHhcCCCceeEEEEEEecCCEEE
Q 026494 83 NNYTFSLNGRKPITLEEKRKLGGGYNSFMQTSLPEKYRG-Y--NPAEETVESSHIAFTKAFPRGFALEVVHVYSGPPVIV 159 (238)
Q Consensus 83 ~~f~~s~NGg~~~~~~e~~~~~g~yN~~l~~~l~~~~~~-Y--dp~~e~f~ss~~~f~~AFPdGf~~EV~eV~s~gp~Va 159 (238)
+.|.-.+|.|..-.+.++++. ++.+.+.=++..+. . -.+++.+......+.+.++.++.+++.-+...|+-.+
T Consensus 178 ~~f~~A~~~gD~~~l~~Lla~----Dv~~~~dggg~~~~~~~~~~G~~~v~~~l~~~~~~~~~~~~~~~~~~~vnG~~a~ 253 (293)
T PRK09636 178 EAFFAALASGDLDALVALLAP----DVVLHADGGGKVPTALRPIYGADKVARFFLGLARRYGPGGSTLVRLALVNGLPGF 253 (293)
T ss_pred HHHHHHHHhCCHHHHHHHHhh----CeEEEecCCCccCCCCccccCHHHHHHHHHHHhhhccCCCceEEEEEEECCceeE
Confidence 345555666666666666665 44443210000000 0 1245555555555555565445566665555554444
Q ss_pred EEEEEEEeeecCCCccCCCCCEEEEEeEEEEEEcCCCeEEEEEEeeCHHHH
Q 026494 160 YKFRHWGYMEGPFKSHAPTGDLVELYGIAIFEVDEQMKIVKVEFFLDRGEL 210 (238)
Q Consensus 160 frwr~~GTh~G~f~GipPTGr~Vei~Gi~i~rv~d~gKIve~~~~~D~~~l 210 (238)
+.-.. |..+.+ ..+.+++ |||+.++..-+|.-|
T Consensus 254 ~~~~~--------------~~~~~~---~~~~~~~-g~I~~i~~~~~p~kl 286 (293)
T PRK09636 254 VTAEA--------------DGEPQT---TALEVED-GKIVAIYDVRNPDKL 286 (293)
T ss_pred EEEeC--------------CceEEE---EEEEEEC-CEEEEEEEEcCHHHh
Confidence 33222 233344 4445566 799999999999877
No 15
>PF14534 DUF4440: Domain of unknown function (DUF4440); PDB: 3HX8_A 3SOY_A 3ROB_B 3GZR_A 3B7C_A 3CU3_A 3FSD_A 2R4I_C 1TP6_A.
Probab=51.73 E-value=47 Score=23.69 Aligned_cols=86 Identities=15% Similarity=0.140 Sum_probs=53.8
Q ss_pred CCCCCceeecccceEEEeCCCCCCChHHHHhhcCCcccccccCCCcccCCCCCChhHHHhHHHHHHHhcCCCceeEEEEE
Q 026494 72 TCFEDYKSVDPNNYTFSLNGRKPITLEEKRKLGGGYNSFMQTSLPEKYRGYNPAEETVESSHIAFTKAFPRGFALEVVHV 151 (238)
Q Consensus 72 ~~~~dw~sv~~~~f~~s~NGg~~~~~~e~~~~~g~yN~~l~~~l~~~~~~Ydp~~e~f~ss~~~f~~AFPdGf~~EV~eV 151 (238)
-|++...++-.+.|.+..++|..++.+++++. +.. . ...++. +.++..+|
T Consensus 15 ~D~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~-------~~~---------------------~-~~~~~~-~~~~~~~v 64 (107)
T PF14534_consen 15 GDIDALASLYADDFVFVGPGGTILGKEAILAA-------FKS---------------------G-FARFSS-IKFEDVEV 64 (107)
T ss_dssp THHHHHHTTEEEEEEEEETTSEEEEHHHHHHH-------HHH---------------------H-CEEEEE-EEEEEEEE
T ss_pred CCHHHHHhhhCCCEEEECCCCCEeCHHHHHHH-------Hhh---------------------c-cCCCce-EEEEEEEE
Confidence 45555566666778888888877777777775 221 0 123455 78888888
Q ss_pred EecCCEEEEEEEEEEeeecCCCccCCCCCEEEE--EeEEEEEEcC
Q 026494 152 YSGPPVIVYKFRHWGYMEGPFKSHAPTGDLVEL--YGIAIFEVDE 194 (238)
Q Consensus 152 ~s~gp~Vafrwr~~GTh~G~f~GipPTGr~Vei--~Gi~i~rv~d 194 (238)
...|+.+++.-+...+..+ .|+++++ .-..|++-.+
T Consensus 65 ~~~gd~a~~~~~~~~~~~~-------~g~~~~~~~~~~~v~~k~~ 102 (107)
T PF14534_consen 65 RVLGDTAVVRGRWTFTWRG-------DGEPVTIRGRFTSVWKKQD 102 (107)
T ss_dssp EEETTEEEEEEEEEEEETT-------TTEEEEEEEEEEEEEEEET
T ss_pred EEECCEEEEEEEEEEEEec-------CCceEEEEEEEEEEEEEeC
Confidence 8889988877776555422 3555544 4455555554
No 16
>PF07310 PAS_5: PAS domain; InterPro: IPR009922 This family contains a number of hypothetical bacterial proteins of unknown function approximately 200 residues long.
Probab=40.36 E-value=27 Score=28.22 Aligned_cols=42 Identities=14% Similarity=0.207 Sum_probs=34.3
Q ss_pred HHHHhcCCCceeEEEEEEecCCEEEEEEEEEEeeecCCCccCCCCCEE
Q 026494 135 AFTKAFPRGFALEVVHVYSGPPVIVYKFRHWGYMEGPFKSHAPTGDLV 182 (238)
Q Consensus 135 ~f~~AFPdGf~~EV~eV~s~gp~Vafrwr~~GTh~G~f~GipPTGr~V 182 (238)
.+....|+ .-|+|+..++ .|++|..||.--+..|...||+.+
T Consensus 32 ~i~~~Lp~---i~ile~~~~~---~~r~RLaGt~i~~~~G~d~tG~~~ 73 (137)
T PF07310_consen 32 DIPRLLPH---IFILEVDDPG---DFRYRLAGTRIVELFGRDLTGRRL 73 (137)
T ss_pred HHHHHhCC---eEEEEEeCCC---ceEEEEecHHHHHHhCCCCCCCCH
Confidence 56788998 5577765433 589999999999999999999976
No 17
>PF07107 WI12: Wound-induced protein WI12; InterPro: IPR009798 This entry consists of several plant wound-induced protein sequences related to WI12 from Mesembryanthemum crystallinum (Common ice plant) (Q9XES3 from SWISSPROT). Wounding, methyl jasmonate, and pathogen infection is known to induce local WI12 expression. WI12 expression is also thought to be developmentally controlled in the placenta and developing seeds. WI12 preferentially accumulates in the cell wall and it has been suggested that it plays a role in the reinforcement of cell wall composition after wounding and during plant development [].
Probab=40.01 E-value=68 Score=26.13 Aligned_cols=59 Identities=10% Similarity=0.068 Sum_probs=44.0
Q ss_pred CceeEEEEEEecCCEEEEEEEEEEeeecCCCccCCCCCEEEEEeEEEEEEcCCCeEEEEEEeeCHHHHHHhhcCC
Q 026494 143 GFALEVVHVYSGPPVIVYKFRHWGYMEGPFKSHAPTGDLVELYGIAIFEVDEQMKIVKVEFFLDRGELLGGLMKL 217 (238)
Q Consensus 143 Gf~~EV~eV~s~gp~Vafrwr~~GTh~G~f~GipPTGr~Vei~Gi~i~rv~d~gKIve~~~~~D~~~ll~QL~~~ 217 (238)
.|++....|.+=|++|.++-- .+.-.+.=+.+.+|.| |+|.+++-||+-.-....|+..
T Consensus 13 sF~F~P~sV~afG~~ViaEG~---------------~~~~~~yWVHaWTV~d-GiITqlREYFNT~ltVt~l~~~ 71 (109)
T PF07107_consen 13 SFRFVPRSVDAFGSTVIAEGC---------------DETRSVYWVHAWTVKD-GIITQLREYFNTSLTVTRLGPG 71 (109)
T ss_pred cEEEeccEEEEECCEEEEecc---------------cCcCcEEEEEEEEecC-CEEEeeeeeeeeEEEEEecccc
Confidence 377887777777888877531 1122366678899997 7999999999998888888754
No 18
>PF01353 GFP: Green fluorescent protein; InterPro: IPR011584 The green fluorescent protein (GFP) is found in the jellyfish (Aequorea victoria), and functions as an energy-transfer acceptor. It fluoresces in vivo upon receiving energy from the Ca2+-activated photoprotein aequorin. The protein absorbs light maximally at 395 nm and exhibits a smaller absorbance peak at 470 nm. The fluorescence emission spectrum peaks at 509 nm with a shoulder at 540 nm. The protein is produced in the photocytes and contains a chromophore, which is composed of modified amino acid residues. The chromophore is formed upon cyclization of the residues ser-dehydrotyr-gly. There are several other members of the GFP family, which are able to fluoresce different colours, sveral of which are non-fluorescent []. These proteins are all essentailly encoded by single genes, since both the substrate and the catalytic enzyme for pigment biosynthesis are provided within a single polypeptide chain []. More information about this protein can be found at Protein of the Month: Green Fluorescent Protein [].; GO: 0008218 bioluminescence; PDB: 2G16_B 1QYO_A 1W7S_B 3ED8_B 3GJ1_A 1GFL_B 3GJ2_C 2WSO_A 3DQD_A 2AWJ_A ....
Probab=34.71 E-value=70 Score=28.89 Aligned_cols=30 Identities=20% Similarity=0.365 Sum_probs=21.1
Q ss_pred HHHHhcCCCceeEEEEEEecCCEEEEEEEE
Q 026494 135 AFTKAFPRGFALEVVHVYSGPPVIVYKFRH 164 (238)
Q Consensus 135 ~f~~AFPdGf~~EV~eV~s~gp~Vafrwr~ 164 (238)
-|+.+||.|+.||-.-.|-+|-.+.+..+.
T Consensus 78 yFk~sfpeGys~eRt~~fEDgGv~t~~~~i 107 (219)
T PF01353_consen 78 YFKQSFPEGYSWERTMRFEDGGVCTASHDI 107 (219)
T ss_dssp HHHHTTTT-EEEEEEEEETTS-EEEEEEEE
T ss_pred HHHHhCCCceEEEEEEEECCCcEEEEEEEE
Confidence 577899999999977777766666555554
No 19
>KOG4457 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.93 E-value=1.5e+02 Score=26.27 Aligned_cols=56 Identities=16% Similarity=0.116 Sum_probs=40.5
Q ss_pred HhcCCCceeEEEEEEecCC--EEEEEEEEEEeeecCCCccCCCC-------CEE-----E---EEeEEEEEEcCCCeEEE
Q 026494 138 KAFPRGFALEVVHVYSGPP--VIVYKFRHWGYMEGPFKSHAPTG-------DLV-----E---LYGIAIFEVDEQMKIVK 200 (238)
Q Consensus 138 ~AFPdGf~~EV~eV~s~gp--~Vafrwr~~GTh~G~f~GipPTG-------r~V-----e---i~Gi~i~rv~d~gKIve 200 (238)
-.||- +.+||+.|---+| +|-.|||.. |++=+= ... + +.|-+++-++++|-|..
T Consensus 93 ~~~ah-v~~EvL~vt~h~d~~Tvr~RWRv~--------gvsv~~~f~~~~l~~~de~~~~~swyDgYSv~yl~~~GlI~k 163 (202)
T KOG4457|consen 93 VFLAH-VEMEVLSVTPHIDEGTVRCRWRVK--------GVSVTRIFMNPRLLRFDERMQNLSWYDGYSVLYLDGNGLIYK 163 (202)
T ss_pred Hhhhh-eeeEeEeecccCCCceEEEEEEEe--------cceEeeeeechHHhhHHHHhcccccccceeEEEECCCceEEe
Confidence 45888 8999998765555 788999994 444110 000 2 67999999999999999
Q ss_pred EE
Q 026494 201 VE 202 (238)
Q Consensus 201 ~~ 202 (238)
+.
T Consensus 164 h~ 165 (202)
T KOG4457|consen 164 HT 165 (202)
T ss_pred ee
Confidence 84
No 20
>PF05626 DUF790: Protein of unknown function (DUF790); InterPro: IPR008508 This family consists of several hypothetical bacterial and archaeal proteins whose functions have not been experimentally verified. Computational analysis of sequence, predicted structure and genomic context suggests that these proteins may be endonucleases involved in either restriction-modification and/or DNA excision repair [].
Probab=32.85 E-value=3.5e+02 Score=26.35 Aligned_cols=116 Identities=18% Similarity=0.238 Sum_probs=66.2
Q ss_pred HHHHHHHH--HheeeeeccccCCCCCceeecccceEEEeCCCCCCChHHHHhhcCCcccccccCCCcccCCCCCChhHHH
Q 026494 53 LEEKVQNL--VKTWEMEMFHKTCFEDYKSVDPNNYTFSLNGRKPITLEEKRKLGGGYNSFMQTSLPEKYRGYNPAEETVE 130 (238)
Q Consensus 53 Le~~V~nl--vk~wemE~shK~~~~dw~sv~~~~f~~s~NGg~~~~~~e~~~~~g~yN~~l~~~l~~~~~~Ydp~~e~f~ 130 (238)
|.-++--| +..|+|+|+=+ |-+-....|+|+++....+. .+ .++....||+..| +
T Consensus 217 lAkllP~l~~~~~W~l~A~i~-----~~~~~~r~~~f~l~~~~~~~--------------~~--~~~~~~~fDS~~E--~ 273 (379)
T PF05626_consen 217 LAKLLPALLHASRWSLEAEIQ-----KDRGGRRTYRFELDSEDGLV--------------SH--YPAEKPEFDSSLE--E 273 (379)
T ss_pred HHHHHHHhhCCCCceEEEEEe-----ccCCCceeEEEEeccccccc--------------CC--CCCCcCCCCcHHH--H
Confidence 44444444 56899998877 33334467777776543211 11 1122233776544 3
Q ss_pred hHHHHHHHhcCCCceeEEEEEEecCCEEEEEEEEEEeeecCCCccCCCCCEEEEEeEEEEEEcCCCeEEEEEEeeCHHHH
Q 026494 131 SSHIAFTKAFPRGFALEVVHVYSGPPVIVYKFRHWGYMEGPFKSHAPTGDLVELYGIAIFEVDEQMKIVKVEFFLDRGEL 210 (238)
Q Consensus 131 ss~~~f~~AFPdGf~~EV~eV~s~gp~Vafrwr~~GTh~G~f~GipPTGr~Vei~Gi~i~rv~d~gKIve~~~~~D~~~l 210 (238)
+....|.++..+ |+|.. +|+-+. .|..|=|.-+.+-+ ++---.+|+=+||-+.-|
T Consensus 274 ~Fa~~f~~~~~~---W~l~R---Ep~~l~------------------~g~~v~IPDF~~~~-~g~~vylEIvGfWtpeYL 328 (379)
T PF05626_consen 274 EFARRFSRLDTD---WELER---EPEPLV------------------LGGSVMIPDFRFEH-DGRRVYLEIVGFWTPEYL 328 (379)
T ss_pred HHHHHHHHhccC---eeeec---CCccee------------------cCCeEEccceeEEE-CCEEEEEEEecCCCHHHH
Confidence 444556666665 88873 444332 34567677777766 432235778899999988
Q ss_pred HHhhcC
Q 026494 211 LGGLMK 216 (238)
Q Consensus 211 l~QL~~ 216 (238)
-+.|.+
T Consensus 329 ~rKl~k 334 (379)
T PF05626_consen 329 ERKLEK 334 (379)
T ss_pred HHHHHH
Confidence 554433
No 21
>PF05404 TRAP-delta: Translocon-associated protein, delta subunit precursor (TRAP-delta); InterPro: IPR008855 This family consists of several eukaryotic translocon-associated protein, delta subunit precursors (TRAP-delta or SSR-delta). The exact function of this protein is unknown [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=25.43 E-value=1e+02 Score=26.87 Aligned_cols=64 Identities=30% Similarity=0.442 Sum_probs=39.4
Q ss_pred cceEEEeCCCCCCChHHHHhhcCCcccccccCCCcccCCCCCChhHHHhHHHHHHHhcCCCceeEEEEEEecCCEEEEEE
Q 026494 83 NNYTFSLNGRKPITLEEKRKLGGGYNSFMQTSLPEKYRGYNPAEETVESSHIAFTKAFPRGFALEVVHVYSGPPVIVYKF 162 (238)
Q Consensus 83 ~~f~~s~NGg~~~~~~e~~~~~g~yN~~l~~~l~~~~~~Ydp~~e~f~ss~~~f~~AFPdGf~~EV~eV~s~gp~Vafrw 162 (238)
.+|.+|+.- |+-.+..|+|+.-+ ||. | +..++|+|--.| +++=+-.|..++.-
T Consensus 78 nkYQVSW~~------e~k~a~sG~y~V~~----------fDE--e----gyaalrKA~R~g-----ed~~~vkplftV~v 130 (167)
T PF05404_consen 78 NKYQVSWTE------EHKKASSGTYEVKF----------FDE--E----GYAALRKAQRNG-----EDVSSVKPLFTVTV 130 (167)
T ss_pred CceEEEEEe------chhhccCCceEEEE----------eCh--H----HHHHHHHHhhcC-----CCcccCCccEEEEE
Confidence 566666643 33334458888765 332 3 445556665554 12224577888889
Q ss_pred EEEEeeecCCC
Q 026494 163 RHWGYMEGPFK 173 (238)
Q Consensus 163 r~~GTh~G~f~ 173 (238)
.|.|.++|||.
T Consensus 131 ~h~Ga~~gpwV 141 (167)
T PF05404_consen 131 NHPGAYKGPWV 141 (167)
T ss_pred ecCccccCCCc
Confidence 99999999874
No 22
>TIGR03291 methan_mark_17 putative methanogenesis marker protein 17. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=24.08 E-value=1e+02 Score=27.29 Aligned_cols=30 Identities=17% Similarity=0.342 Sum_probs=26.3
Q ss_pred ccCCCCCChhHHHhHHHHHHHhcCCCceeE
Q 026494 118 KYRGYNPAEETVESSHIAFTKAFPRGFALE 147 (238)
Q Consensus 118 ~~~~Ydp~~e~f~ss~~~f~~AFPdGf~~E 147 (238)
+...|||..+-++.-.....+.||.||+..
T Consensus 123 dlvV~DP~~~l~~~v~d~~~rI~PEGFRVr 152 (185)
T TIGR03291 123 DLEVADPRKDLKKKVYDFMFRVFPEGFRVK 152 (185)
T ss_pred cceEECchHHHHHHHHHHHHHhCCCccEEe
Confidence 456789999999999999999999997654
No 23
>PF09883 DUF2110: Uncharacterized protein conserved in archaea (DUF2110); InterPro: IPR016757 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=22.24 E-value=68 Score=29.19 Aligned_cols=32 Identities=22% Similarity=0.163 Sum_probs=27.4
Q ss_pred CCCHHHHHHHHHheeeeeccccCCCCCceeec
Q 026494 50 PGSLEEKVQNLVKTWEMEMFHKTCFEDYKSVD 81 (238)
Q Consensus 50 ~gsLe~~V~nlvk~wemE~shK~~~~dw~sv~ 81 (238)
-.||..+|+|+++-.|.|..--.+.++|.+|.
T Consensus 15 ld~L~~~v~n~lgdLdV~~~i~~~~~~wv~vt 46 (225)
T PF09883_consen 15 LDSLRSLVENDLGDLDVEWDIGITKDDWVKVT 46 (225)
T ss_pred HHHHHHHHHHhhcCeeEEEEeccccCCceEEE
Confidence 34799999999999999987777889998874
No 24
>PF10049 DUF2283: Protein of unknown function (DUF2283); InterPro: IPR019270 Members of this family of hypothetical proteins have no known function.
Probab=22.07 E-value=1.9e+02 Score=19.69 Aligned_cols=28 Identities=32% Similarity=0.443 Sum_probs=22.4
Q ss_pred CCCCEEEEEeEEEEEEcCCCeEEEEEEe
Q 026494 177 PTGDLVELYGIAIFEVDEQMKIVKVEFF 204 (238)
Q Consensus 177 PTGr~Vei~Gi~i~rv~d~gKIve~~~~ 204 (238)
+.-+..++..-.++.++++|+|+.++..
T Consensus 20 ~~~~s~e~~~~iild~d~~G~ivGIEIl 47 (50)
T PF10049_consen 20 PVEESEELDDGIILDYDEDGRIVGIEIL 47 (50)
T ss_pred CceeeEEecCCEEEEECCCCCEEEEEEE
Confidence 3347778887888899999999998753
No 25
>COG4051 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.18 E-value=1.9e+02 Score=25.80 Aligned_cols=71 Identities=28% Similarity=0.391 Sum_probs=48.4
Q ss_pred CHHHHHHHHHheeeeeccccCCCCCceeecccceEEEeCCCCCCChHHHHhhcCCcccccccCCCcccCCCCCChhHHHh
Q 026494 52 SLEEKVQNLVKTWEMEMFHKTCFEDYKSVDPNNYTFSLNGRKPITLEEKRKLGGGYNSFMQTSLPEKYRGYNPAEETVES 131 (238)
Q Consensus 52 sLe~~V~nlvk~wemE~shK~~~~dw~sv~~~~f~~s~NGg~~~~~~e~~~~~g~yN~~l~~~l~~~~~~Ydp~~e~f~s 131 (238)
=|+++ |+|-||.- -|.+..| |++|.+++.--++ ++|+... .+-..|||...--+.
T Consensus 90 YlP~l---L~kL~e~~--G~~rvrq-----psRfeV~ie~~~~--~e~~~~l-------------~em~VhDprk~l~~r 144 (202)
T COG4051 90 YLPEL---LVKLWERY--GKARVRQ-----PSRFEVSIETDKP--AEEAAFL-------------KEMMVHDPRKRLHER 144 (202)
T ss_pred hhHHH---HHHHHHHh--ccccccC-----CceEEEEecCCCc--hhhhhhh-------------hcceeeChhhhHHHH
Confidence 34544 34446543 3444443 7889999887766 6665543 246789999888888
Q ss_pred HHHHHHHhcCCCceeE
Q 026494 132 SHIAFTKAFPRGFALE 147 (238)
Q Consensus 132 s~~~f~~AFPdGf~~E 147 (238)
-....-+++|.||++.
T Consensus 145 vyDfi~Rv~PEGfRV~ 160 (202)
T COG4051 145 VYDFIIRVTPEGFRVR 160 (202)
T ss_pred HHHHHHHhCccceEee
Confidence 8888889999997654
No 26
>PF09886 DUF2113: Uncharacterized protein conserved in archaea (DUF2113); InterPro: IPR016762 There is currently no experimental data for members of this group or their homologues. Based on distant sequence similarity, they may be tentatively predicted to be nucleic acid-binding proteins, they are also likely to be linked to methanogenesis or a process closely connected to it.
Probab=20.70 E-value=1.3e+02 Score=26.62 Aligned_cols=84 Identities=15% Similarity=0.298 Sum_probs=52.2
Q ss_pred CCCCCHHHHHHHHHheeeeeccccCCCCCceeecccceEEEeCCCCCCChHHHHhhcCCcccccccCCCcccCCCCCChh
Q 026494 48 WPPGSLEEKVQNLVKTWEMEMFHKTCFEDYKSVDPNNYTFSLNGRKPITLEEKRKLGGGYNSFMQTSLPEKYRGYNPAEE 127 (238)
Q Consensus 48 ~~~gsLe~~V~nlvk~wemE~shK~~~~dw~sv~~~~f~~s~NGg~~~~~~e~~~~~g~yN~~l~~~l~~~~~~Ydp~~e 127 (238)
-.+.=|+++++.| |+-.--+++ . .|++|++.+-...... +++. +...|||..+
T Consensus 80 ~dEtYlp~LL~kL---W~kyGr~~V--~-----QP~Rf~I~i~~~~~~~-~~i~----------------dlvV~Dp~~~ 132 (188)
T PF09886_consen 80 EDETYLPDLLKKL---WEKYGRENV--D-----QPDRFEIIIDSDIDEA-KDIE----------------DLVVYDPSED 132 (188)
T ss_pred cccchHHHHHHHH---HHHhCcccc--C-----CCCceEEEecCCcccc-cchh----------------hcEEECcHHH
Confidence 3444566666555 443322222 1 2667777776655443 2222 3567899999
Q ss_pred HHHhHHHHHHHhcCCCceeEEEEEEecCCEEEE
Q 026494 128 TVESSHIAFTKAFPRGFALEVVHVYSGPPVIVY 160 (238)
Q Consensus 128 ~f~ss~~~f~~AFPdGf~~EV~eV~s~gp~Vaf 160 (238)
-.+.-..++.+.+|.||+.. .-...++.++|
T Consensus 133 l~~~v~da~~RI~PEGFRVr--~~~~~~~~f~~ 163 (188)
T PF09886_consen 133 LKKKVYDAMFRIAPEGFRVR--RHYYEGNSFAF 163 (188)
T ss_pred HHHHHHHHHHHhCCCccEEe--eccccCCeEEE
Confidence 99999999999999996654 33455666554
Done!