Query 026495
Match_columns 237
No_of_seqs 268 out of 1707
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 08:46:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026495.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026495hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG4109 Predicted transcriptio 99.8 6.2E-20 1.3E-24 153.5 11.4 168 25-228 127-300 (432)
2 COG2524 Predicted transcriptio 99.8 1.9E-18 4.2E-23 139.1 10.7 118 79-228 168-285 (294)
3 COG3448 CBS-domain-containing 99.7 1.4E-17 3.1E-22 136.5 8.9 130 75-228 237-366 (382)
4 cd04603 CBS_pair_KefB_assoc Th 99.7 5.5E-16 1.2E-20 112.8 13.0 106 94-228 2-107 (111)
5 cd04619 CBS_pair_6 The CBS dom 99.7 6.4E-16 1.4E-20 112.9 13.2 108 95-228 3-110 (114)
6 PRK15094 magnesium/cobalt effl 99.7 8.2E-16 1.8E-20 130.5 11.7 129 68-228 54-183 (292)
7 PRK11543 gutQ D-arabinose 5-ph 99.7 8.4E-16 1.8E-20 132.5 12.0 117 82-228 196-314 (321)
8 cd04596 CBS_pair_DRTGG_assoc T 99.7 2.5E-15 5.5E-20 108.6 11.9 102 94-228 3-104 (108)
9 PRK10892 D-arabinose 5-phospha 99.6 1.7E-15 3.7E-20 130.9 12.8 120 81-228 200-319 (326)
10 cd04618 CBS_pair_5 The CBS dom 99.6 3.1E-15 6.7E-20 106.8 12.1 91 94-228 2-94 (98)
11 cd04617 CBS_pair_4 The CBS dom 99.6 4.4E-15 9.5E-20 109.1 13.2 108 94-228 2-114 (118)
12 cd04641 CBS_pair_28 The CBS do 99.6 4.4E-15 9.5E-20 109.4 12.7 115 94-228 2-116 (120)
13 cd04630 CBS_pair_17 The CBS do 99.6 4.9E-15 1.1E-19 108.1 12.7 108 94-228 2-110 (114)
14 TIGR03520 GldE gliding motilit 99.6 1.9E-15 4.1E-20 134.0 12.5 127 68-228 178-305 (408)
15 cd04639 CBS_pair_26 The CBS do 99.6 4.3E-15 9.2E-20 107.6 12.2 106 94-228 2-107 (111)
16 cd04582 CBS_pair_ABC_OpuCA_ass 99.6 7E-15 1.5E-19 105.6 12.8 101 94-228 2-102 (106)
17 cd04605 CBS_pair_MET2_assoc Th 99.6 7.8E-15 1.7E-19 106.1 12.8 104 94-228 3-106 (110)
18 cd04801 CBS_pair_M50_like This 99.6 9.1E-15 2E-19 106.6 13.1 106 94-228 2-110 (114)
19 PRK07807 inosine 5-monophospha 99.6 3.3E-15 7.1E-20 134.2 12.4 114 80-228 86-199 (479)
20 cd04583 CBS_pair_ABC_OpuCA_ass 99.6 1.1E-14 2.5E-19 104.8 13.0 103 94-228 3-105 (109)
21 cd04593 CBS_pair_EriC_assoc_ba 99.6 1.1E-14 2.3E-19 106.4 12.8 108 94-228 2-111 (115)
22 cd04607 CBS_pair_NTP_transfera 99.6 1.1E-14 2.4E-19 105.9 12.8 106 95-228 4-109 (113)
23 cd04627 CBS_pair_14 The CBS do 99.6 1.2E-14 2.6E-19 107.5 13.1 118 94-229 2-120 (123)
24 cd04600 CBS_pair_HPP_assoc Thi 99.6 1.2E-14 2.7E-19 107.3 12.6 118 94-228 3-120 (124)
25 cd04643 CBS_pair_30 The CBS do 99.6 1.3E-14 2.7E-19 105.9 11.8 111 94-228 2-112 (116)
26 cd04626 CBS_pair_13 The CBS do 99.6 1.7E-14 3.7E-19 104.6 12.3 106 94-228 2-107 (111)
27 cd04623 CBS_pair_10 The CBS do 99.6 2.5E-14 5.4E-19 103.6 13.1 108 94-228 2-109 (113)
28 cd04614 CBS_pair_1 The CBS dom 99.6 2.7E-14 5.8E-19 101.4 12.5 91 94-228 2-92 (96)
29 cd04624 CBS_pair_11 The CBS do 99.6 3.2E-14 7E-19 103.1 12.8 107 94-228 2-108 (112)
30 cd04615 CBS_pair_2 The CBS dom 99.6 2.7E-14 5.9E-19 103.7 12.2 107 95-228 3-109 (113)
31 cd04588 CBS_pair_CAP-ED_DUF294 99.6 4E-14 8.8E-19 102.3 12.9 105 94-228 2-106 (110)
32 cd04613 CBS_pair_SpoIVFB_EriC_ 99.6 2.9E-14 6.3E-19 103.4 11.9 108 94-228 2-110 (114)
33 TIGR00393 kpsF KpsF/GutQ famil 99.6 1.3E-14 2.8E-19 121.9 11.2 114 82-225 154-268 (268)
34 PRK01862 putative voltage-gate 99.6 1.1E-14 2.3E-19 134.8 11.5 122 78-228 442-565 (574)
35 cd04601 CBS_pair_IMPDH This cd 99.6 3.6E-14 7.7E-19 102.4 11.9 103 94-228 3-106 (110)
36 cd04803 CBS_pair_15 The CBS do 99.6 3.9E-14 8.4E-19 104.3 12.2 117 94-228 2-118 (122)
37 cd04621 CBS_pair_8 The CBS dom 99.6 3.5E-14 7.6E-19 107.2 12.3 129 94-228 2-131 (135)
38 cd04604 CBS_pair_KpsF_GutQ_ass 99.6 3.7E-14 8E-19 103.0 11.9 108 94-228 3-110 (114)
39 cd04642 CBS_pair_29 The CBS do 99.6 3.9E-14 8.5E-19 105.2 12.3 121 94-228 2-122 (126)
40 cd04602 CBS_pair_IMPDH_2 This 99.6 3.8E-14 8.2E-19 103.4 11.8 103 94-228 3-110 (114)
41 cd04629 CBS_pair_16 The CBS do 99.6 2.7E-14 6E-19 103.8 10.9 109 94-228 2-110 (114)
42 cd04599 CBS_pair_GGDEF_assoc2 99.6 5.1E-14 1.1E-18 100.8 12.1 100 94-228 2-101 (105)
43 cd04608 CBS_pair_PALP_assoc Th 99.6 1.2E-14 2.6E-19 108.1 9.1 108 94-228 3-119 (124)
44 cd04595 CBS_pair_DHH_polyA_Pol 99.6 6.8E-14 1.5E-18 101.2 12.6 104 94-228 3-106 (110)
45 COG3620 Predicted transcriptio 99.6 1.1E-14 2.4E-19 109.4 8.4 116 81-228 63-178 (187)
46 cd04587 CBS_pair_CAP-ED_DUF294 99.6 6.9E-14 1.5E-18 101.5 12.4 108 94-228 2-109 (113)
47 cd04611 CBS_pair_PAS_GGDEF_DUF 99.6 8.7E-14 1.9E-18 100.5 12.9 106 94-228 2-107 (111)
48 cd04640 CBS_pair_27 The CBS do 99.6 2.6E-14 5.6E-19 106.3 10.4 111 94-228 2-122 (126)
49 cd04631 CBS_pair_18 The CBS do 99.6 5.8E-14 1.3E-18 103.8 12.0 119 94-228 2-121 (125)
50 cd04635 CBS_pair_22 The CBS do 99.6 5.5E-14 1.2E-18 103.5 11.8 117 94-228 2-118 (122)
51 cd04590 CBS_pair_CorC_HlyC_ass 99.6 8.3E-14 1.8E-18 100.8 12.4 105 94-228 2-107 (111)
52 cd04610 CBS_pair_ParBc_assoc T 99.6 8.7E-14 1.9E-18 99.9 12.4 101 94-228 3-103 (107)
53 cd04589 CBS_pair_CAP-ED_DUF294 99.6 1.1E-13 2.4E-18 100.2 12.8 106 94-228 2-107 (111)
54 TIGR00400 mgtE Mg2+ transporte 99.6 3.7E-14 8E-19 127.4 12.3 116 78-228 126-246 (449)
55 cd04622 CBS_pair_9 The CBS dom 99.6 1.3E-13 2.8E-18 100.0 13.0 108 94-228 2-109 (113)
56 cd04632 CBS_pair_19 The CBS do 99.6 1.3E-13 2.8E-18 102.6 13.1 121 94-228 2-124 (128)
57 cd04636 CBS_pair_23 The CBS do 99.6 1.5E-13 3.2E-18 103.0 13.4 127 94-228 2-128 (132)
58 cd04800 CBS_pair_CAP-ED_DUF294 99.6 1.1E-13 2.5E-18 100.1 12.4 106 94-228 2-107 (111)
59 cd04606 CBS_pair_Mg_transporte 99.6 5.7E-14 1.2E-18 101.6 10.8 98 98-228 2-104 (109)
60 cd04594 CBS_pair_EriC_assoc_ar 99.6 9.6E-14 2.1E-18 99.7 11.9 97 96-228 4-100 (104)
61 cd04586 CBS_pair_BON_assoc Thi 99.5 6.8E-14 1.5E-18 105.2 11.4 125 94-228 3-131 (135)
62 TIGR01303 IMP_DH_rel_1 IMP deh 99.5 6E-14 1.3E-18 126.0 13.0 154 29-228 40-197 (475)
63 cd04620 CBS_pair_7 The CBS dom 99.5 1.3E-13 2.7E-18 100.6 12.5 107 94-228 2-111 (115)
64 PRK07107 inosine 5-monophospha 99.5 4.4E-14 9.5E-19 127.7 11.5 115 84-229 95-215 (502)
65 cd04612 CBS_pair_SpoIVFB_EriC_ 99.5 1.5E-13 3.2E-18 99.3 12.1 106 94-228 2-107 (111)
66 cd04585 CBS_pair_ACT_assoc2 Th 99.5 1.5E-13 3.3E-18 100.7 12.3 117 94-228 2-118 (122)
67 cd04625 CBS_pair_12 The CBS do 99.5 1.8E-13 3.9E-18 99.2 12.3 107 94-228 2-108 (112)
68 TIGR01302 IMP_dehydrog inosine 99.5 1E-13 2.2E-18 124.5 13.0 112 84-229 81-196 (450)
69 cd04802 CBS_pair_3 The CBS dom 99.5 2.6E-13 5.7E-18 98.3 12.8 107 94-228 2-108 (112)
70 PRK05567 inosine 5'-monophosph 99.5 2.1E-13 4.6E-18 123.6 14.1 111 84-228 88-199 (486)
71 PRK11573 hypothetical protein; 99.5 1.2E-13 2.6E-18 122.6 12.2 131 68-228 174-305 (413)
72 PTZ00314 inosine-5'-monophosph 99.5 3.9E-13 8.5E-18 121.6 15.3 112 84-229 97-213 (495)
73 cd04637 CBS_pair_24 The CBS do 99.5 3.3E-13 7.3E-18 99.3 11.7 117 94-228 2-118 (122)
74 PLN02274 inosine-5'-monophosph 99.5 2.4E-13 5.1E-18 123.1 12.4 106 89-228 106-216 (505)
75 cd04584 CBS_pair_ACT_assoc Thi 99.5 5.1E-13 1.1E-17 98.0 12.0 116 94-228 2-117 (121)
76 cd04638 CBS_pair_25 The CBS do 99.5 6.7E-13 1.5E-17 95.3 12.2 101 94-228 2-102 (106)
77 PRK14869 putative manganese-de 99.5 2.7E-13 5.9E-18 124.8 12.4 172 53-229 34-299 (546)
78 cd04633 CBS_pair_20 The CBS do 99.5 4.5E-13 9.7E-18 98.4 11.0 116 94-228 2-117 (121)
79 cd02205 CBS_pair The CBS domai 99.5 1.2E-12 2.6E-17 93.8 12.9 108 94-228 2-109 (113)
80 COG2905 Predicted signal-trans 99.5 1.7E-13 3.8E-18 121.5 9.6 119 80-228 146-264 (610)
81 cd04591 CBS_pair_EriC_assoc_eu 99.5 9.3E-13 2E-17 95.0 11.7 96 94-228 3-101 (105)
82 cd04609 CBS_pair_PALP_assoc2 T 99.5 8E-13 1.7E-17 95.2 11.3 105 94-228 2-106 (110)
83 COG1253 TlyC Hemolysins and re 99.5 6.2E-13 1.3E-17 118.9 12.6 129 68-228 193-322 (429)
84 COG0517 FOG: CBS domain [Gener 99.5 2.9E-12 6.3E-17 93.3 13.2 109 88-228 4-115 (117)
85 cd04598 CBS_pair_GGDEF_assoc T 99.4 1.5E-12 3.2E-17 95.4 11.3 110 94-228 2-115 (119)
86 cd04634 CBS_pair_21 The CBS do 99.4 2.1E-12 4.6E-17 98.3 12.2 133 94-228 2-139 (143)
87 TIGR01137 cysta_beta cystathio 99.4 1.1E-12 2.4E-17 118.2 11.8 117 80-228 332-448 (454)
88 COG4536 CorB Putative Mg2+ and 99.4 2.8E-14 6.1E-19 120.9 -0.2 191 2-228 118-318 (423)
89 cd04592 CBS_pair_EriC_assoc_eu 99.3 1.9E-11 4E-16 92.2 11.3 108 94-217 2-118 (133)
90 COG2239 MgtE Mg/Co/Ni transpor 99.3 5.8E-12 1.3E-16 111.9 9.7 114 80-228 129-247 (451)
91 PRK14869 putative manganese-de 99.2 1.3E-11 2.8E-16 113.8 4.4 182 26-229 195-388 (546)
92 COG4535 CorC Putative Mg2+ and 99.2 3.7E-11 8E-16 96.2 5.7 120 79-228 63-183 (293)
93 PF00571 CBS: CBS domain CBS d 99.1 1.7E-10 3.7E-15 73.6 5.9 54 85-140 1-54 (57)
94 KOG0474 Cl- channel CLC-7 and 99.1 1.6E-10 3.4E-15 103.8 6.1 152 77-230 576-743 (762)
95 PF00571 CBS: CBS domain CBS d 99.0 9.7E-10 2.1E-14 70.1 5.2 50 179-228 1-50 (57)
96 TIGR01186 proV glycine betaine 98.9 1.6E-08 3.4E-13 88.5 12.2 101 95-228 252-352 (363)
97 PRK10070 glycine betaine trans 98.9 1.3E-08 2.7E-13 90.2 11.5 113 83-228 274-387 (400)
98 KOG1764 5'-AMP-activated prote 98.9 7.2E-09 1.6E-13 91.0 9.8 116 94-228 238-353 (381)
99 COG2524 Predicted transcriptio 98.8 1.7E-08 3.7E-13 82.1 8.7 89 50-140 200-289 (294)
100 KOG2550 IMP dehydrogenase/GMP 98.8 7.1E-09 1.5E-13 89.2 6.7 104 94-229 117-223 (503)
101 cd04603 CBS_pair_KefB_assoc Th 98.7 8.3E-08 1.8E-12 69.4 9.0 56 82-139 55-110 (111)
102 TIGR03520 GldE gliding motilit 98.7 1.9E-08 4.1E-13 89.5 4.9 169 33-231 203-376 (408)
103 TIGR00400 mgtE Mg2+ transporte 98.7 4.6E-08 1E-12 88.1 7.0 99 81-214 193-291 (449)
104 PRK15094 magnesium/cobalt effl 98.6 2.2E-07 4.7E-12 79.1 8.3 106 33-141 79-188 (292)
105 cd04619 CBS_pair_6 The CBS dom 98.6 4.2E-07 9.2E-12 65.9 8.3 57 81-139 57-113 (114)
106 cd04597 CBS_pair_DRTGG_assoc2 98.5 1.8E-07 3.9E-12 68.2 6.0 84 54-139 25-112 (113)
107 cd04596 CBS_pair_DRTGG_assoc T 98.5 8.1E-07 1.7E-11 63.6 9.1 56 82-139 52-107 (108)
108 cd04600 CBS_pair_HPP_assoc Thi 98.5 9.5E-07 2.1E-11 64.7 9.2 57 81-139 67-123 (124)
109 cd04595 CBS_pair_DHH_polyA_Pol 98.5 1.1E-06 2.3E-11 63.1 8.5 56 81-139 54-109 (110)
110 cd04611 CBS_pair_PAS_GGDEF_DUF 98.5 1.3E-06 2.8E-11 62.6 8.8 57 81-139 54-110 (111)
111 cd04801 CBS_pair_M50_like This 98.5 7.8E-07 1.7E-11 64.3 7.7 58 82-139 56-113 (114)
112 PRK11573 hypothetical protein; 98.4 8.9E-07 1.9E-11 78.9 8.6 105 33-140 199-309 (413)
113 cd04610 CBS_pair_ParBc_assoc T 98.4 2.4E-06 5.2E-11 60.8 9.1 56 82-139 51-106 (107)
114 cd04639 CBS_pair_26 The CBS do 98.4 1.5E-06 3.3E-11 62.3 8.0 56 82-139 55-110 (111)
115 COG3448 CBS-domain-containing 98.4 4.5E-07 9.7E-12 75.3 5.6 62 168-229 236-297 (382)
116 PRK05567 inosine 5'-monophosph 98.4 1.4E-06 3.1E-11 79.3 9.3 104 32-140 96-203 (486)
117 cd04803 CBS_pair_15 The CBS do 98.4 2.5E-06 5.4E-11 62.3 8.9 57 81-139 65-121 (122)
118 cd04588 CBS_pair_CAP-ED_DUF294 98.4 2.4E-06 5.3E-11 61.1 8.5 55 83-139 55-109 (110)
119 cd04620 CBS_pair_7 The CBS dom 98.4 2.4E-06 5.1E-11 61.8 8.3 56 82-139 57-114 (115)
120 PRK11543 gutQ D-arabinose 5-ph 98.4 3.1E-06 6.7E-11 73.0 10.2 114 25-140 199-318 (321)
121 cd04630 CBS_pair_17 The CBS do 98.4 3E-06 6.5E-11 61.3 8.6 56 81-139 58-113 (114)
122 PRK07107 inosine 5-monophospha 98.4 7.9E-06 1.7E-10 74.4 12.8 61 80-140 158-218 (502)
123 cd04583 CBS_pair_ABC_OpuCA_ass 98.4 3.6E-06 7.7E-11 60.0 8.6 55 83-139 54-108 (109)
124 cd04623 CBS_pair_10 The CBS do 98.3 3.9E-06 8.3E-11 60.2 8.8 55 82-139 58-112 (113)
125 cd04605 CBS_pair_MET2_assoc Th 98.3 3.4E-06 7.3E-11 60.4 8.4 54 84-139 56-109 (110)
126 cd04631 CBS_pair_18 The CBS do 98.3 3.1E-06 6.7E-11 62.1 8.3 56 82-139 69-124 (125)
127 cd04601 CBS_pair_IMPDH This cd 98.3 4.8E-06 1.1E-10 59.4 9.1 56 82-139 53-109 (110)
128 cd04607 CBS_pair_NTP_transfera 98.3 1.5E-06 3.2E-11 62.7 6.4 55 82-138 57-111 (113)
129 cd04604 CBS_pair_KpsF_GutQ_ass 98.3 4.9E-06 1.1E-10 59.8 8.9 56 82-139 58-113 (114)
130 cd04617 CBS_pair_4 The CBS dom 98.3 1.6E-06 3.5E-11 63.2 6.1 59 81-139 56-117 (118)
131 cd04622 CBS_pair_9 The CBS dom 98.3 5.6E-06 1.2E-10 59.4 8.8 56 82-139 57-112 (113)
132 cd04597 CBS_pair_DRTGG_assoc2 98.3 1.4E-06 3E-11 63.5 5.4 52 177-228 58-109 (113)
133 cd04800 CBS_pair_CAP-ED_DUF294 98.3 6.6E-06 1.4E-10 59.0 9.0 55 82-139 56-110 (111)
134 cd04626 CBS_pair_13 The CBS do 98.3 4.7E-06 1E-10 59.8 8.1 55 82-139 56-110 (111)
135 cd04627 CBS_pair_14 The CBS do 98.3 2.5E-06 5.4E-11 62.6 6.7 50 87-138 72-121 (123)
136 PRK07807 inosine 5-monophospha 98.3 1.5E-05 3.2E-10 72.3 12.9 57 83-141 148-204 (479)
137 cd04613 CBS_pair_SpoIVFB_EriC_ 98.3 4.4E-06 9.5E-11 60.0 7.8 56 82-139 57-113 (114)
138 cd04618 CBS_pair_5 The CBS dom 98.3 2.1E-06 4.5E-11 60.9 5.9 45 95-139 52-97 (98)
139 COG1253 TlyC Hemolysins and re 98.3 4.6E-06 9.9E-11 74.9 9.4 105 33-140 218-326 (429)
140 cd04585 CBS_pair_ACT_assoc2 Th 98.3 2.5E-06 5.4E-11 62.0 6.3 56 82-139 66-121 (122)
141 cd04633 CBS_pair_20 The CBS do 98.3 5.2E-06 1.1E-10 60.5 7.8 56 81-139 65-120 (121)
142 cd04615 CBS_pair_2 The CBS dom 98.3 3E-06 6.5E-11 61.0 6.4 57 81-139 56-112 (113)
143 cd04641 CBS_pair_28 The CBS do 98.3 3.2E-06 7E-11 61.7 6.6 46 94-139 74-119 (120)
144 cd04606 CBS_pair_Mg_transporte 98.2 3.1E-06 6.8E-11 60.7 6.3 56 82-139 52-107 (109)
145 cd04642 CBS_pair_29 The CBS do 98.2 9.2E-06 2E-10 59.9 9.0 51 87-139 75-125 (126)
146 cd04590 CBS_pair_CorC_HlyC_ass 98.2 7.3E-06 1.6E-10 58.7 7.9 54 83-139 57-110 (111)
147 cd04625 CBS_pair_12 The CBS do 98.2 3.4E-06 7.4E-11 60.6 6.2 55 82-139 57-111 (112)
148 cd04643 CBS_pair_30 The CBS do 98.2 7.4E-06 1.6E-10 59.1 7.9 54 82-139 62-115 (116)
149 COG4536 CorB Putative Mg2+ and 98.2 4.1E-06 9E-11 71.8 7.3 109 31-139 210-321 (423)
150 cd04589 CBS_pair_CAP-ED_DUF294 98.2 1.1E-05 2.3E-10 57.9 8.6 56 81-139 55-110 (111)
151 cd04635 CBS_pair_22 The CBS do 98.2 3.5E-06 7.5E-11 61.5 6.1 57 81-139 65-121 (122)
152 cd04587 CBS_pair_CAP-ED_DUF294 98.2 3.3E-06 7.1E-11 60.7 5.7 55 83-139 58-112 (113)
153 cd04593 CBS_pair_EriC_assoc_ba 98.2 3.9E-06 8.5E-11 60.7 6.2 55 83-139 58-114 (115)
154 cd04582 CBS_pair_ABC_OpuCA_ass 98.2 5.2E-06 1.1E-10 59.0 6.6 54 84-139 52-105 (106)
155 cd04599 CBS_pair_GGDEF_assoc2 98.2 1.5E-05 3.3E-10 56.4 9.0 54 82-138 50-103 (105)
156 cd04624 CBS_pair_11 The CBS do 98.2 1.2E-05 2.6E-10 57.7 8.5 56 82-139 56-111 (112)
157 cd04612 CBS_pair_SpoIVFB_EriC_ 98.2 1.4E-05 3E-10 57.1 8.8 54 84-139 57-110 (111)
158 cd04802 CBS_pair_3 The CBS dom 98.2 1.2E-05 2.6E-10 57.7 8.3 56 81-139 56-111 (112)
159 cd04602 CBS_pair_IMPDH_2 This 98.2 4.2E-06 9.1E-11 60.5 5.8 55 83-139 57-113 (114)
160 cd04621 CBS_pair_8 The CBS dom 98.2 6E-06 1.3E-10 62.0 6.7 55 82-139 80-134 (135)
161 cd04640 CBS_pair_27 The CBS do 98.1 3.8E-06 8.3E-11 62.0 5.1 57 81-139 62-125 (126)
162 cd04586 CBS_pair_BON_assoc Thi 98.1 4.4E-06 9.6E-11 62.4 5.4 55 82-139 80-134 (135)
163 TIGR01303 IMP_DH_rel_1 IMP deh 98.1 7.6E-05 1.6E-09 67.6 14.2 57 83-141 146-202 (475)
164 PRK10892 D-arabinose 5-phospha 98.1 1.4E-05 3.1E-10 69.0 9.3 57 81-140 267-323 (326)
165 cd04629 CBS_pair_16 The CBS do 98.1 5.1E-06 1.1E-10 59.8 5.4 55 82-139 59-113 (114)
166 cd04636 CBS_pair_23 The CBS do 98.1 5.8E-06 1.3E-10 61.5 5.8 53 84-139 79-131 (132)
167 cd04608 CBS_pair_PALP_assoc Th 98.1 3.2E-06 7E-11 62.5 4.2 58 81-140 57-123 (124)
168 cd04614 CBS_pair_1 The CBS dom 98.1 1E-05 2.2E-10 57.0 6.3 45 95-139 51-95 (96)
169 COG0517 FOG: CBS domain [Gener 98.1 2.6E-05 5.7E-10 56.2 8.6 87 50-138 27-117 (117)
170 cd04637 CBS_pair_24 The CBS do 98.1 8.8E-06 1.9E-10 59.4 6.1 55 83-139 67-121 (122)
171 KOG1764 5'-AMP-activated prote 98.1 1.3E-05 2.8E-10 70.6 8.1 116 95-231 164-283 (381)
172 smart00116 CBS Domain in cysta 98.1 1.5E-05 3.2E-10 47.6 5.9 46 95-140 2-47 (49)
173 cd04584 CBS_pair_ACT_assoc Thi 98.1 2.5E-05 5.5E-10 56.7 8.2 56 81-139 65-120 (121)
174 cd04594 CBS_pair_EriC_assoc_ar 98.1 1.1E-05 2.4E-10 57.4 6.1 53 84-139 51-103 (104)
175 COG3620 Predicted transcriptio 98.1 6.7E-06 1.5E-10 62.5 5.0 67 161-228 47-115 (187)
176 PRK01862 putative voltage-gate 98.1 2.4E-05 5.2E-10 72.8 9.7 57 82-140 511-569 (574)
177 PLN02274 inosine-5'-monophosph 98.1 1.2E-05 2.6E-10 73.4 7.3 63 81-143 161-223 (505)
178 PTZ00314 inosine-5'-monophosph 98.0 0.00012 2.6E-09 66.8 13.4 61 81-141 157-217 (495)
179 TIGR01302 IMP_dehydrog inosine 98.0 3E-05 6.5E-10 70.0 9.1 93 44-141 101-200 (450)
180 cd04609 CBS_pair_PALP_assoc2 T 98.0 3.2E-05 7E-10 55.0 7.6 54 82-139 56-109 (110)
181 cd02205 CBS_pair The CBS domai 98.0 5.6E-05 1.2E-09 53.4 8.3 53 85-139 60-112 (113)
182 cd04634 CBS_pair_21 The CBS do 98.0 4.8E-05 1E-09 57.5 8.4 55 82-139 88-142 (143)
183 COG2905 Predicted signal-trans 98.0 2E-05 4.3E-10 71.0 7.0 61 78-141 209-269 (610)
184 cd04638 CBS_pair_25 The CBS do 98.0 7.8E-05 1.7E-09 52.9 8.7 54 83-139 52-105 (106)
185 cd04632 CBS_pair_19 The CBS do 98.0 2.2E-05 4.7E-10 57.9 6.0 56 82-139 70-127 (128)
186 cd04591 CBS_pair_EriC_assoc_eu 97.9 2.7E-05 5.9E-10 55.7 6.1 49 88-139 56-104 (105)
187 COG4109 Predicted transcriptio 97.9 5.7E-05 1.2E-09 64.5 7.7 87 50-142 218-306 (432)
188 KOG0475 Cl- channel CLC-3 and 97.9 0.00014 3E-09 66.3 10.6 123 95-228 558-689 (696)
189 TIGR00393 kpsF KpsF/GutQ famil 97.9 7.2E-05 1.6E-09 62.7 8.1 51 81-133 218-268 (268)
190 cd04598 CBS_pair_GGDEF_assoc T 97.8 4.5E-05 9.8E-10 55.2 5.7 56 82-139 60-118 (119)
191 smart00116 CBS Domain in cysta 97.8 5.9E-05 1.3E-09 44.8 4.9 42 187-228 2-43 (49)
192 COG4535 CorC Putative Mg2+ and 97.8 8.9E-05 1.9E-09 60.0 6.9 96 42-140 88-187 (293)
193 cd04592 CBS_pair_EriC_assoc_eu 97.7 9.4E-05 2E-09 55.5 6.0 43 186-228 2-44 (133)
194 COG4175 ProV ABC-type proline/ 97.5 0.00012 2.7E-09 62.0 4.2 107 79-227 270-376 (386)
195 TIGR01137 cysta_beta cystathio 97.5 0.00025 5.4E-09 64.1 6.4 55 174-228 332-386 (454)
196 TIGR03415 ABC_choXWV_ATP choli 97.5 0.00037 8.1E-09 61.5 7.2 105 79-228 270-374 (382)
197 COG2239 MgtE Mg/Co/Ni transpor 97.4 0.00023 5E-09 63.8 4.8 59 80-140 193-251 (451)
198 TIGR01186 proV glycine betaine 97.2 0.00088 1.9E-08 58.8 6.2 55 84-141 303-357 (363)
199 PRK10070 glycine betaine trans 96.8 0.0027 5.9E-08 56.5 6.2 56 84-142 338-393 (400)
200 KOG0476 Cl- channel CLC-2 and 96.7 0.012 2.5E-07 55.3 9.2 64 78-143 583-648 (931)
201 KOG2550 IMP dehydrogenase/GMP 95.8 0.013 2.8E-07 51.3 4.4 58 81-140 169-226 (503)
202 KOG0474 Cl- channel CLC-7 and 95.4 0.028 6E-07 51.8 5.1 55 84-140 691-745 (762)
203 KOG2118 Predicted membrane pro 95.0 0.04 8.7E-07 50.4 5.1 124 77-228 198-323 (498)
204 COG1125 OpuBA ABC-type proline 93.8 0.075 1.6E-06 44.3 3.7 61 79-139 245-307 (309)
205 TIGR03415 ABC_choXWV_ATP choli 93.7 0.14 3.1E-06 45.4 5.5 52 84-140 327-378 (382)
206 COG1125 OpuBA ABC-type proline 93.1 0.32 6.9E-06 40.6 6.2 105 104-228 196-304 (309)
207 KOG0475 Cl- channel CLC-3 and 89.8 0.87 1.9E-05 42.4 6.1 58 80-140 636-693 (696)
208 COG4175 ProV ABC-type proline/ 89.8 0.68 1.5E-05 39.9 5.0 47 94-141 336-382 (386)
209 KOG0476 Cl- channel CLC-2 and 82.3 1.2 2.6E-05 42.5 2.9 51 177-227 588-640 (931)
210 PF07085 DRTGG: DRTGG domain; 78.0 0.81 1.8E-05 32.5 0.3 46 25-72 54-102 (105)
211 PRK11388 DNA-binding transcrip 56.8 36 0.00077 32.3 6.7 103 104-227 61-164 (638)
212 PF05198 IF3_N: Translation in 51.0 28 0.00061 23.3 3.6 25 116-140 12-36 (76)
213 PF14827 Cache_3: Sensory doma 48.9 19 0.00042 25.8 2.8 18 118-135 93-110 (116)
214 COG2216 KdpB High-affinity K+ 48.4 44 0.00094 31.1 5.4 36 103-139 414-449 (681)
215 PF14827 Cache_3: Sensory doma 42.0 30 0.00066 24.7 3.0 17 210-226 93-109 (116)
216 PF02743 Cache_1: Cache domain 32.4 56 0.0012 21.4 2.9 17 118-134 18-34 (81)
217 PF02603 Hpr_kinase_N: HPr Ser 31.7 33 0.00071 25.3 1.8 37 26-64 75-113 (127)
218 PHA00673 acetyltransferase dom 29.5 1.2E+02 0.0025 23.3 4.5 33 194-226 40-72 (154)
219 PF14332 DUF4388: Domain of un 29.5 66 0.0014 22.2 3.0 41 192-233 5-45 (103)
220 COG0290 InfC Translation initi 29.4 52 0.0011 25.7 2.5 33 114-146 16-48 (176)
221 cd02958 UAS UAS family; UAS is 29.1 1.8E+02 0.0039 20.4 5.3 48 177-224 43-94 (114)
222 PF14044 NETI: NETI protein 27.5 89 0.0019 19.6 2.8 21 97-117 3-23 (57)
223 COG2216 KdpB High-affinity K+ 26.6 1.1E+02 0.0023 28.7 4.3 34 194-228 413-446 (681)
224 PF13365 Trypsin_2: Trypsin-li 25.6 51 0.0011 22.9 1.8 19 113-131 102-120 (120)
225 PF13596 PAS_10: PAS domain; P 25.5 64 0.0014 22.2 2.3 17 116-132 83-99 (106)
226 PF13420 Acetyltransf_4: Acety 25.2 93 0.002 22.8 3.3 42 195-236 36-78 (155)
227 PF12282 H_kinase_N: Signal tr 24.1 77 0.0017 23.9 2.6 18 209-227 107-124 (145)
228 PF13673 Acetyltransf_10: Acet 23.1 1.4E+02 0.0031 20.4 3.8 33 194-227 30-62 (117)
229 PHA00673 acetyltransferase dom 22.3 2E+02 0.0043 22.1 4.6 36 102-137 40-75 (154)
230 PRK10638 glutaredoxin 3; Provi 20.5 2E+02 0.0044 18.8 3.9 28 110-139 44-71 (83)
No 1
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=99.82 E-value=6.2e-20 Score=153.49 Aligned_cols=168 Identities=23% Similarity=0.327 Sum_probs=148.1
Q ss_pred chhhhhccCCEEEEecCccchhHHH--hccCCCceEEecCCce-eeeehhhhcccC---CCCCcccccccccccCceeEE
Q 026495 25 GRTSFALQLPCLLLSRPGCRVFSVL--ATSSDRVSALRRSSAV-FASGTLTANSAA---PSSGVYTVGDFMTTKEELHVV 98 (237)
Q Consensus 25 ~~~ai~~~v~~li~~~~~~~v~~~~--~~~~~~v~v~~~sp~~-~~~~~~~~~~~~---~~~~~~~v~~im~~~~~~~~v 98 (237)
.+.|++++...++ ++ |+.+.+++ .+.+.++|+++ +.++ |..+.++..++. .+..-+.|+++|.|.++..++
T Consensus 127 q~lAL~~~~AVLv-TG-GF~~s~evi~lAne~~lPvls-tsYDTFTVAtmIN~Al~n~lIKkdI~~Vedi~~P~~~~~yL 203 (432)
T COG4109 127 QLLALENGNAVLV-TG-GFDVSDEVIKLANEKGLPVLS-TSYDTFTVATMINKALSNQLIKKDIITVEDIMTPLEDTSYL 203 (432)
T ss_pred HHHHHhcCCeEEE-eC-CCCccHHHHHhhcccCCceEE-ecccceeHHHHHHHHHHHhhhhhheeeHHHhccccccceec
Confidence 3567888877666 55 78888888 78899999999 7788 998888875433 234567899999988899999
Q ss_pred cCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHhhcCCc
Q 026495 99 KPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKM 178 (237)
Q Consensus 99 ~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (237)
.+++++++..++..++++++|||+|+..+++|+||.+|+... ..+.+
T Consensus 204 ~~~d~v~d~~~l~~kt~~sRfPVvn~~~kvvGvVt~rDv~~~---------------------------------~~~t~ 250 (432)
T COG4109 204 RETDTVEDWLDLVEKTGHSRFPVVNRSMKVVGVVTMRDVLDK---------------------------------KPSTT 250 (432)
T ss_pred cccccHHHHHHHHHHcCCCccceecccceEEEEEEehhhhcC---------------------------------CCCcc
Confidence 999999999999999999999999999999999999999852 34688
Q ss_pred cccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495 179 VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK 228 (237)
Q Consensus 179 v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d 228 (237)
+..+|+++|.++.+.+++..+.+.|.-.+++.+||++++.+++|+||++|
T Consensus 251 ieKVMtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGiitR~d 300 (432)
T COG4109 251 IEKVMTKNPITVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGIITRQD 300 (432)
T ss_pred HHHHhccCCeeecccchHHHHHHHHHhccceeeeEEcCCceEEEEEEHHH
Confidence 99999999999999999999999999999999999999999999999987
No 2
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.77 E-value=1.9e-18 Score=139.07 Aligned_cols=118 Identities=29% Similarity=0.376 Sum_probs=107.3
Q ss_pred CCCcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccc
Q 026495 79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVD 158 (237)
Q Consensus 79 ~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~ 158 (237)
..-+.+|+++|++ ++.++.+++|+.++.+.|.+++++.+||+|+ ++++|++|..|+..+...+
T Consensus 168 siPk~~V~~~~s~--~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~-dk~vGiit~~dI~~aia~g-------------- 230 (294)
T COG2524 168 SIPKEKVKNLMSK--KLITVRPDDTLREAAKLFYEKGIRGAPVVDD-DKIVGIITLSDIAKAIANG-------------- 230 (294)
T ss_pred ecCcchhhhhccC--CceEecCCccHHHHHHHHHHcCccCCceecC-CceEEEEEHHHHHHHHHcC--------------
Confidence 3456689999999 8999999999999999999999999999996 5999999999999754322
Q ss_pred cchhhHHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495 159 STWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK 228 (237)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d 228 (237)
..+..++++|.++++++.+|+.+.+|+++|..+++.+|.|+|.+|+.+|+||+.|
T Consensus 231 ---------------~~~~kV~~~M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrTD 285 (294)
T COG2524 231 ---------------NLDAKVSDYMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRTD 285 (294)
T ss_pred ---------------CccccHHHHhccCCceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEehHH
Confidence 2467899999999999999999999999999999999999998999999999987
No 3
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.73 E-value=1.4e-17 Score=136.52 Aligned_cols=130 Identities=28% Similarity=0.361 Sum_probs=113.7
Q ss_pred ccCCCCCcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcc
Q 026495 75 SAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMF 154 (237)
Q Consensus 75 ~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~ 154 (237)
+...++..++..+||++ ++++++.++++.+|.+.|.+++++.+||+|++.+++|+||.+|+.+....
T Consensus 237 a~~R~~~~LtcadIMSr--dVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl~~~a~~----------- 303 (382)
T COG3448 237 ALRRRMGELTCADIMSR--DVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLKHARP----------- 303 (382)
T ss_pred HHHHHhccccHHHhcCc--cceecCCcCChHHHHHHHHHcCcccccccccccceeeeeeHHHHhhccCc-----------
Confidence 44567788999999999 99999999999999999999999999999999999999999999963211
Q ss_pred cccccchhhHHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495 155 PEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK 228 (237)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d 228 (237)
.- .+.+.......++.+|+.+..++.++++..+++..|.+.+.+++||+|++|+++|+||..|
T Consensus 304 -------~p----~qrlr~~~~~~vk~imt~~v~tv~pdtpa~~lvp~lad~g~H~lpvld~~g~lvGIvsQtD 366 (382)
T COG3448 304 -------SP----FQRLRFLRPPTVKGIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLDAAGKLVGIVSQTD 366 (382)
T ss_pred -------ch----HHHhhccCCCcccccccCcceeecCCCcHHHHHHHhhcCCcceeeEEcCCCcEEEEeeHHH
Confidence 11 1222344567899999999999999999999999999999999999999999999999887
No 4
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.70 E-value=5.5e-16 Score=112.82 Aligned_cols=106 Identities=21% Similarity=0.226 Sum_probs=91.8
Q ss_pred ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHh
Q 026495 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (237)
Q Consensus 94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (237)
++.+++.+.++.++.+.|.+.+.+.+||+|++|+++|+++..|+.+... ..
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~-----------------------------~~ 52 (111)
T cd04603 2 QTVSVNCENPLREAIKMINELGARAVVVVDEENKVLGQVTLSDLLEIGP-----------------------------ND 52 (111)
T ss_pred ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHhhcc-----------------------------cc
Confidence 3678899999999999999999999999998899999999999986310 00
Q ss_pred hcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495 174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK 228 (237)
Q Consensus 174 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d 228 (237)
....++.++|..++.++.+++++.+|++.|.+++.+.+||+|++|+++|+||.+|
T Consensus 53 ~~~~~v~~~~~~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~~~~~Giit~~d 107 (111)
T cd04603 53 YETLKVCEVYIVPVPIVYCDSKVTDLLRIFRETEPPVVAVVDKEGKLVGTIYERE 107 (111)
T ss_pred ccccChhheeecCCcEECCCCcHHHHHHHHHHcCCCeEEEEcCCCeEEEEEEhHH
Confidence 1134688899888899999999999999999999999999997899999999876
No 5
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.69 E-value=6.4e-16 Score=112.95 Aligned_cols=108 Identities=24% Similarity=0.264 Sum_probs=93.0
Q ss_pred eeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHhh
Q 026495 95 LHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKT 174 (237)
Q Consensus 95 ~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (237)
+.++++++++.++.+.|.+.+...+||+|++|+++|+++.+|+.+...... ...
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~g~~~G~vt~~dl~~~~~~~~--------------------------~~~ 56 (114)
T cd04619 3 LAKIDVNATLQRAAKILGEPGIDLVVVCDPHGKLAGVLTKTDVVRQMGRCG--------------------------GPG 56 (114)
T ss_pred eEEECCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEehHHHHHHHhhcC--------------------------CCc
Confidence 677899999999999999999999999998899999999999986421100 011
Q ss_pred cCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495 175 NGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK 228 (237)
Q Consensus 175 ~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d 228 (237)
...++.++|.++++++.+++++.++++.|.+++..++||+|++|+++|+|+++|
T Consensus 57 ~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~Gvi~~~d 110 (114)
T cd04619 57 CTAPVENVMTRAVVSCRPGDLLHDVWQVMKQRGLKNIPVVDENARPLGVLNARD 110 (114)
T ss_pred ccCCHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEEEhHh
Confidence 235688999888999999999999999999999999999998899999999876
No 6
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.66 E-value=8.2e-16 Score=130.51 Aligned_cols=129 Identities=21% Similarity=0.313 Sum_probs=108.0
Q ss_pred eehhhhcccCCCCCcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCC-CcEEEEEehHhHhhhccccCC
Q 026495 68 SGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGS 146 (237)
Q Consensus 68 ~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~-~~~~Givt~~dl~~~~~~~~~ 146 (237)
+..++.. ...+...+|+++|+++.++.+++.+.+++++++.+.+++++++||++++ ++++|+|+.+|++....
T Consensus 54 e~~~i~~--vl~l~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~---- 127 (292)
T PRK15094 54 TRDMLEG--VMDIADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMR---- 127 (292)
T ss_pred HHHHHHH--HhccCCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHhh----
Confidence 4444444 5567889999999997779999999999999999999999999999876 78999999999985321
Q ss_pred CCCCCCcccccccchhhHHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEc
Q 026495 147 GRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKC 226 (237)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~ 226 (237)
.......+.++|.+ +.++++++++.++++.|.+++.+.+||+|++|.++|+||.
T Consensus 128 -------------------------~~~~~~~l~~l~r~-~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G~viGiVTl 181 (292)
T PRK15094 128 -------------------------SDAEAFSMDKVLRQ-AVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTI 181 (292)
T ss_pred -------------------------ccCCcCCHHHHcCC-CcCcCCCCcHHHHHHHHHhcCCEEEEEEeCCCCEEEEeEH
Confidence 00112347788865 5689999999999999999999999999998999999998
Q ss_pred cc
Q 026495 227 SK 228 (237)
Q Consensus 227 ~d 228 (237)
.|
T Consensus 182 eD 183 (292)
T PRK15094 182 ED 183 (292)
T ss_pred HH
Confidence 76
No 7
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.66 E-value=8.4e-16 Score=132.48 Aligned_cols=117 Identities=21% Similarity=0.205 Sum_probs=102.9
Q ss_pred cccccccccccCc--eeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCccccccc
Q 026495 82 VYTVGDFMTTKEE--LHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDS 159 (237)
Q Consensus 82 ~~~v~~im~~~~~--~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~ 159 (237)
..+|+++|.+ + ++++++++++.++.+.|.+.+...+||+|++|+++|+|+..|+.++....
T Consensus 196 ~~~V~~im~~--~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g~~iG~vt~~dl~~~~~~~--------------- 258 (321)
T PRK11543 196 LNKVHHLMRR--DDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLRRWLVGG--------------- 258 (321)
T ss_pred HhHHHHHhcc--CCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEecHHHHHHHHhCC---------------
Confidence 5689999998 6 99999999999999999988889999999999999999999998642110
Q ss_pred chhhHHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495 160 TWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK 228 (237)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d 228 (237)
.....++.++|.++++++.+++++.+|++.|.+++...+||+|++|+++|+||++|
T Consensus 259 -------------~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~d 314 (321)
T PRK11543 259 -------------GALTTPVNEAMTRGGTTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQD 314 (321)
T ss_pred -------------CCcCCcHHHhcCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHH
Confidence 11235688999999999999999999999999999999999998889999999876
No 8
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.65 E-value=2.5e-15 Score=108.55 Aligned_cols=102 Identities=25% Similarity=0.353 Sum_probs=91.8
Q ss_pred ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHh
Q 026495 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (237)
Q Consensus 94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (237)
++.++.+++++.++...|.+.+.+.+||+|++|+++|+++..++....
T Consensus 3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~-------------------------------- 50 (108)
T cd04596 3 DTGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSKDVAGKD-------------------------------- 50 (108)
T ss_pred ccEEeCCCCCHHHHHHHHHHcCCCceeEECCCCeEEEEecHHHHhccc--------------------------------
Confidence 688899999999999999999989999999889999999999997420
Q ss_pred hcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495 174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK 228 (237)
Q Consensus 174 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d 228 (237)
...++.++|..++.++++++++.++++.|.+++...+||++++|+++|+++..|
T Consensus 51 -~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~d 104 (108)
T cd04596 51 -PDTTIEKVMTKNPITVNPKTSVASVAHMMIWEGIEMLPVVDDNKKLLGIISRQD 104 (108)
T ss_pred -ccccHHHHhcCCCeEECCCCCHHHHHHHHHHcCCCeeeEEcCCCCEEEEEEHHH
Confidence 135688889888899999999999999999999999999998899999999875
No 9
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.65 E-value=1.7e-15 Score=130.88 Aligned_cols=120 Identities=23% Similarity=0.267 Sum_probs=102.0
Q ss_pred CcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccc
Q 026495 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDST 160 (237)
Q Consensus 81 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~ 160 (237)
..++|+++|.+.++++++++++++.++++.|.+++...+||+|++|+++|+||.+|+.+..... .
T Consensus 200 ~~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~g~lvGivt~~Dl~~~~~~~-~-------------- 264 (326)
T PRK10892 200 LLLRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDNMKIEGIFTDGDLRRVFDMG-I-------------- 264 (326)
T ss_pred ccCcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEecHHHHHHHhcC-C--------------
Confidence 6678999998533689999999999999999998888888889889999999999998642100 0
Q ss_pred hhhHHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495 161 WKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK 228 (237)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d 228 (237)
.....++.++|.+++.++.+++++.+|++.|.+++.+.+||++ +|+++|+||++|
T Consensus 265 ------------~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~-~~~lvGiit~~d 319 (326)
T PRK10892 265 ------------DLRQASIADVMTPGGIRVRPGILAVDALNLMQSRHITSVLVAD-GDHLLGVLHMHD 319 (326)
T ss_pred ------------CcccCCHHHhcCCCCEEECCCCCHHHHHHHHHHCCCcEEEEee-CCEEEEEEEhHH
Confidence 0113579999999999999999999999999999999999998 689999999987
No 10
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.65 E-value=3.1e-15 Score=106.80 Aligned_cols=91 Identities=31% Similarity=0.434 Sum_probs=82.7
Q ss_pred ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCC-CcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHH
Q 026495 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLS 172 (237)
Q Consensus 94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (237)
.+.++++++++.++.+.|.+++++.+||+|++ |+++|++|..|+.+..
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~------------------------------- 50 (98)
T cd04618 2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILIL------------------------------- 50 (98)
T ss_pred eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhe-------------------------------
Confidence 47889999999999999999999999999974 8999999999998521
Q ss_pred hhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCC-CcEEEEEEccc
Q 026495 173 KTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDAD-GWNYHKRKCSK 228 (237)
Q Consensus 173 ~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-~~~iGvIt~~d 228 (237)
. +.++.+++++.+|++.|.+++.+.+||++++ |+++|+||.+|
T Consensus 51 ----~---------~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~giit~~d 94 (98)
T cd04618 51 ----R---------LVSIHPERSLFDAALLLLKNKIHRLPVIDPSTGTGLYILTSRR 94 (98)
T ss_pred ----e---------eEEeCCCCcHHHHHHHHHHCCCCEeeEEECCCCCceEEeehhh
Confidence 0 6789999999999999999999999999987 89999999987
No 11
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.65 E-value=4.4e-15 Score=109.14 Aligned_cols=108 Identities=27% Similarity=0.271 Sum_probs=91.1
Q ss_pred ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHh
Q 026495 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (237)
Q Consensus 94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (237)
++.++++++++.++++.|..++...+||+|++|+++|+|+..|+.+...... .
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~Givt~~dl~~~~~~~~---------------------------~ 54 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDEDGDLVGVVSRKDLLKASIGGA---------------------------D 54 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHcCC---------------------------C
Confidence 4678999999999999999999999999998899999999999986421100 0
Q ss_pred hcCCcccccccc--CceEEcCCCCHHHHHHHHHHcCCcEEEEEcCC---CcEEEEEEccc
Q 026495 174 TNGKMVGDLMTP--APVVVRETTNLEDAARLLLETKYRRLPVVDAD---GWNYHKRKCSK 228 (237)
Q Consensus 174 ~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~---~~~iGvIt~~d 228 (237)
....++.++|.+ +++++.+++++.+++++|.+++.+.+||+|++ |+++|+||++|
T Consensus 55 ~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~ 114 (118)
T cd04617 55 LQKVPVGVIMTRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTN 114 (118)
T ss_pred ccCCCHHHHhCCCCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhh
Confidence 113457788874 67899999999999999999999999999876 69999999876
No 12
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.64 E-value=4.4e-15 Score=109.39 Aligned_cols=115 Identities=21% Similarity=0.300 Sum_probs=89.5
Q ss_pred ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHh
Q 026495 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (237)
Q Consensus 94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (237)
++.++++++++.++.+.|.+++.+.+||+|++|+++|+++.+|++++.......... . .....
T Consensus 2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv~~~dl~~~~~~~~~~~~~-----------~---~~~~~--- 64 (120)
T cd04641 2 NIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINLAKEGAYNNLD-----------L---TVGEA--- 64 (120)
T ss_pred CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEEeHHHHHHHHhcCcccccc-----------C---CHHHH---
Confidence 578899999999999999999999999999889999999999999743211100000 0 00000
Q ss_pred hcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495 174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK 228 (237)
Q Consensus 174 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d 228 (237)
....+.|..++.++.+++++.++++.|.+++.+.+||+|++|+++|+||++|
T Consensus 65 ---~~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~~~Givt~~d 116 (120)
T cd04641 65 ---LERRSQDFEGVRTCSPDDCLRTIFDLIVKARVHRLVVVDENKRVEGIISLSD 116 (120)
T ss_pred ---HhhcccCCCCCeEEcCCCcHHHHHHHHHhcCccEEEEECCCCCEEEEEEHHH
Confidence 0122345566789999999999999999999999999997799999999876
No 13
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.64 E-value=4.9e-15 Score=108.09 Aligned_cols=108 Identities=23% Similarity=0.276 Sum_probs=92.0
Q ss_pred ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCC-CcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHH
Q 026495 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLS 172 (237)
Q Consensus 94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (237)
+++++.++.++.++++.|.+.+.+.+||+|++ |+++|+++.+|+++.+...+.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~-------------------------- 55 (114)
T cd04630 2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGR-------------------------- 55 (114)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCC--------------------------
Confidence 57889999999999999999999999999987 899999999999864221100
Q ss_pred hhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495 173 KTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK 228 (237)
Q Consensus 173 ~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d 228 (237)
.....++.++|..+++++++++++.++++.|.+.+.+.+||+++ |+++|+|+++|
T Consensus 56 ~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~Gvi~~~d 110 (114)
T cd04630 56 DPDRVNVYEIMTKPLISVSPDMDIKYCARLMERTNIRRAPVVEN-NELIGIISLTD 110 (114)
T ss_pred CCCccCHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCEeeEeeC-CEEEEEEEHHH
Confidence 01135688899888999999999999999999999999999996 99999999876
No 14
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=99.64 E-value=1.9e-15 Score=134.00 Aligned_cols=127 Identities=20% Similarity=0.209 Sum_probs=109.1
Q ss_pred eehhhhcccCCCCCcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCC-CcEEEEEehHhHhhhccccCC
Q 026495 68 SGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGS 146 (237)
Q Consensus 68 ~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~-~~~~Givt~~dl~~~~~~~~~ 146 (237)
+..++.. ...+.+++|+++|+|+.++.+++.+++++++.+.+.+++++++||++++ ++++|+|+.+|++....
T Consensus 178 E~~~i~~--vl~l~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~---- 251 (408)
T TIGR03520 178 EQKILQG--IVSFGNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLN---- 251 (408)
T ss_pred HHHHHHH--HhccCCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhc----
Confidence 4444444 5678899999999998899999999999999999999999999999865 68999999999985311
Q ss_pred CCCCCCcccccccchhhHHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEc
Q 026495 147 GRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKC 226 (237)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~ 226 (237)
. ...++.++|. ++.++++++++.++++.|.+++.+.++|+|++|..+|+||.
T Consensus 252 --------------------------~-~~~~l~~~~~-~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G~~~GiVT~ 303 (408)
T TIGR03520 252 --------------------------K-KNFDWQSLLR-EPYFVPENKKLDDLLRDFQEKKNHLAIVVDEYGGTSGLVTL 303 (408)
T ss_pred --------------------------c-CCCCHHHHcC-CCeEeCCCCcHHHHHHHHHhcCceEEEEEcCCCCEEEEEEH
Confidence 0 1234677775 57899999999999999999999999999999999999999
Q ss_pred cc
Q 026495 227 SK 228 (237)
Q Consensus 227 ~d 228 (237)
.|
T Consensus 304 eD 305 (408)
T TIGR03520 304 ED 305 (408)
T ss_pred HH
Confidence 87
No 15
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.64 E-value=4.3e-15 Score=107.63 Aligned_cols=106 Identities=25% Similarity=0.353 Sum_probs=92.3
Q ss_pred ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHh
Q 026495 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (237)
Q Consensus 94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (237)
++.++.+++++.++.+.|.+.+...+||+|++|+++|+|+..++.+... ..
T Consensus 2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~-----------------------------~~ 52 (111)
T cd04639 2 HFETLSPADTLDDAADALLATTQHEFPVVDGDGHLVGLLTRDDLIRALA-----------------------------EG 52 (111)
T ss_pred CceEcCCCCcHHHHHHHHHHcCCCcceEECCCCcEEEEeeHHHHHHHHH-----------------------------hc
Confidence 4678899999999999999888999999998899999999999986421 11
Q ss_pred hcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495 174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK 228 (237)
Q Consensus 174 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d 228 (237)
....++.++|..+++.+.+++++.++++.|.+++...+||++++|+++|++|++|
T Consensus 53 ~~~~~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~d 107 (111)
T cd04639 53 GPDAPVRGVMRRDFPTVSPSATLDAVLRLMQQGGAPAVPVVDGSGRLVGLVTLEN 107 (111)
T ss_pred CCCCcHHHHhcCCCcEECCCCcHHHHHHHHHhcCCceeeEEcCCCCEEEEEEHHH
Confidence 1235688889888999999999999999999999999999997799999999876
No 16
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.64 E-value=7e-15 Score=105.60 Aligned_cols=101 Identities=23% Similarity=0.345 Sum_probs=89.7
Q ss_pred ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHh
Q 026495 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (237)
Q Consensus 94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (237)
++++++++.++.++.+.|.+.+.+.+||+|++|+++|+++..|+.+..
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~g~~~Giv~~~dl~~~~-------------------------------- 49 (106)
T cd04582 2 EPITVRPDDPLSDALGLMDDSDLRALTVVDADGQPLGFVTRREAARAS-------------------------------- 49 (106)
T ss_pred CCcEecCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEeHHHHHHhc--------------------------------
Confidence 577899999999999999999999999999889999999999998531
Q ss_pred hcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495 174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK 228 (237)
Q Consensus 174 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d 228 (237)
..++.++|.+.+..+.+++++.++++.|.+++...+||++++|+++|+|+++|
T Consensus 50 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~~ 102 (106)
T cd04582 50 --GGCCGDHAEPFKVTVSVDDDLRIVLSRMFAHDMSWLPCVDEDGRYVGEVTQRS 102 (106)
T ss_pred --ccchhhhcccCCEEECCCCCHHHHHHHHHHCCCCeeeEECCCCcEEEEEEHHH
Confidence 13467888777788999999999999999999999999998889999999875
No 17
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.63 E-value=7.8e-15 Score=106.08 Aligned_cols=104 Identities=26% Similarity=0.425 Sum_probs=91.4
Q ss_pred ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHh
Q 026495 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (237)
Q Consensus 94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (237)
++.++.+++++.++++.|.+++...+||+|++|++.|+++.+++++...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~------------------------------- 51 (110)
T cd04605 3 PVVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDISKAVA------------------------------- 51 (110)
T ss_pred CCEEECCCCCHHHHHHHHHhCCCceEEEECCCCcEEEEEeHHHHHHHHh-------------------------------
Confidence 5788999999999999999999999999998899999999999985321
Q ss_pred hcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495 174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK 228 (237)
Q Consensus 174 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d 228 (237)
....++.++|.+++..+.+++++.++++.|.+++.+.+||++++|+++|+|++.|
T Consensus 52 ~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~v~~~d 106 (110)
T cd04605 52 RDKKSVEDIMTRNVITATPDEPIDVAARKMERHNISALPVVDAENRVIGIITSED 106 (110)
T ss_pred hCccCHHHhcCCCCeEECCCCcHHHHHHHHHHhCCCEEeEECCCCcEEEEEEHHH
Confidence 0123477888888899999999999999999999999999998899999999876
No 18
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.63 E-value=9.1e-15 Score=106.57 Aligned_cols=106 Identities=26% Similarity=0.290 Sum_probs=89.0
Q ss_pred ceeEEcCCCCHHHHHHHHHHCC-CCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHH
Q 026495 94 ELHVVKPTTTVDEALEILVEKR-ITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLS 172 (237)
Q Consensus 94 ~~~~v~~~~~l~~~~~~~~~~~-~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (237)
++.++++++++.++.+.|.+.+ .+.+||+|++|+++|+|+.+|+.+... .
T Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~-----------------------------~ 52 (114)
T cd04801 2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGIISLADLRAIPT-----------------------------S 52 (114)
T ss_pred CcceeCCCCCHHHHHHHHhccCCceeEEEEcCCCcEEEEEEHHHHHHHHH-----------------------------h
Confidence 5788999999999999997664 889999998899999999999986421 0
Q ss_pred hhcCCcccccccc--CceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495 173 KTNGKMVGDLMTP--APVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK 228 (237)
Q Consensus 173 ~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d 228 (237)
.....++.++|.+ .++++.+++++.++++.|.+++.+++||++++|+++|+|+.+|
T Consensus 53 ~~~~~~v~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~d 110 (114)
T cd04801 53 QWAQTTVIQVMTPAAKLVTVLSEESLAEVLKLLEEQGLDELAVVEDSGQVIGLITEAD 110 (114)
T ss_pred hccccchhhhhcccccceEECCCCcHHHHHHHHHHCCCCeeEEEcCCCcEEEEEeccc
Confidence 1113567888864 3678999999999999999999999999997789999999876
No 19
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.63 E-value=3.3e-15 Score=134.23 Aligned_cols=114 Identities=25% Similarity=0.295 Sum_probs=102.8
Q ss_pred CCcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCccccccc
Q 026495 80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDS 159 (237)
Q Consensus 80 ~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~ 159 (237)
.+.+++.++|.+ +++++++++++.++.+.|.+++++.+||+|++++++|+||.+|+...
T Consensus 86 l~~VKv~~iMi~--~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~gklvGIVT~rDL~~~------------------- 144 (479)
T PRK07807 86 VAWVKSRDLVFD--TPVTLSPDDTVGDALALLPKRAHGAVVVVDEEGRPVGVVTEADCAGV------------------- 144 (479)
T ss_pred Hhhccccccccc--CCeEECCCCCHHHHHHHHHhcCCceEEEECCCCeEEEEEeHHHHhcC-------------------
Confidence 345677889988 89999999999999999999999999999988999999999999642
Q ss_pred chhhHHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495 160 TWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK 228 (237)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d 228 (237)
....++.++|+++++++++++++.+|+++|.+++.+.+||+|++|+++|+||++|
T Consensus 145 --------------~~~~~V~diMt~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~D 199 (479)
T PRK07807 145 --------------DRFTQVRDVMSTDLVTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTG 199 (479)
T ss_pred --------------ccCCCHHHhccCCceEECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHH
Confidence 0135689999999999999999999999999999999999998899999999987
No 20
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.63 E-value=1.1e-14 Score=104.84 Aligned_cols=103 Identities=28% Similarity=0.376 Sum_probs=91.4
Q ss_pred ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHh
Q 026495 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (237)
Q Consensus 94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (237)
++..++++.++.++...|.+.+...+||+|++|+++|+++..|+.+..
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~-------------------------------- 50 (109)
T cd04583 3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVSLESLEQAY-------------------------------- 50 (109)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCceEEEEcCCCcEEEEEEHHHHHHHh--------------------------------
Confidence 577899999999999999999999999999889999999999998531
Q ss_pred hcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495 174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK 228 (237)
Q Consensus 174 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d 228 (237)
....++.++|...+..+++++++.++++.|.+.+..++||++++|+++|++|++|
T Consensus 51 ~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~~g~~~Gvit~~~ 105 (109)
T cd04583 51 KEAKSLEDIMLEDVFTVQPDASLRDVLGLVLKRGPKYVPVVDEDGKLVGLITRSS 105 (109)
T ss_pred hcCCcHhHhhcCCceEECCCCcHHHHHHHHHHcCCceeeEECCCCeEEEEEehHH
Confidence 1124678888888899999999999999999999999999998899999999876
No 21
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.62 E-value=1.1e-14 Score=106.37 Aligned_cols=108 Identities=27% Similarity=0.290 Sum_probs=91.8
Q ss_pred ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHh
Q 026495 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (237)
Q Consensus 94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (237)
++.++.+++++.++.+.|.+.+.+.+||+|++|+++|+++.+||.+...... .
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~~---------------------------~ 54 (115)
T cd04593 2 PPPVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRALEADE---------------------------A 54 (115)
T ss_pred CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCCCCEEEEEEHHHHHHHHhccc---------------------------c
Confidence 4678899999999999999999999999998899999999999986421100 0
Q ss_pred hcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCC--CcEEEEEEccc
Q 026495 174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDAD--GWNYHKRKCSK 228 (237)
Q Consensus 174 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~--~~~iGvIt~~d 228 (237)
....++.++|..+++++.+++++.++++.|.+++...+||+|++ |+++|+||++|
T Consensus 55 ~~~~~~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~d 111 (115)
T cd04593 55 GEPSAVDEVATPPLLTVHPDEPLAHALDRMASRGLRQLPVVDRGNPGQVLGLLTREN 111 (115)
T ss_pred cccccHHHhccCCceEECCCCCHHHHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHH
Confidence 11234778888889999999999999999999999999999876 79999999876
No 22
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.62 E-value=1.1e-14 Score=105.94 Aligned_cols=106 Identities=21% Similarity=0.307 Sum_probs=91.3
Q ss_pred eeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHhh
Q 026495 95 LHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKT 174 (237)
Q Consensus 95 ~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (237)
..+++.+.++.++.+.|.+.+.+.+||+|++|+++|+++.+|+.+..... ..
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~----------------------------~~ 55 (113)
T cd04607 4 QLLVSPDASILDALRKIDKNALRIVLVVDENGRLLGTVTDGDIRRALLKG----------------------------LS 55 (113)
T ss_pred ceEECCCCCHHHHHHHHHhcCcCEEEEECCCCCEEEEEEcHHHHHHHhcC----------------------------CC
Confidence 56789999999999999999999999999889999999999997532100 11
Q ss_pred cCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495 175 NGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK 228 (237)
Q Consensus 175 ~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d 228 (237)
...++.++|.+.+..+.+++++.++++.|.+++.+.+||++++|+++|+||.+|
T Consensus 56 ~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~d 109 (113)
T cd04607 56 LDDPVSEVMNRNPITAKVGSSREEILALMRERSIRHLPILDEEGRVVGLATLDD 109 (113)
T ss_pred cCCCHHHhhcCCCEEEcCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEhHH
Confidence 134688899888889999999999999999999999999998899999999876
No 23
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.62 E-value=1.2e-14 Score=107.53 Aligned_cols=118 Identities=18% Similarity=0.138 Sum_probs=90.6
Q ss_pred ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCC-CcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHH
Q 026495 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLS 172 (237)
Q Consensus 94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (237)
++.++++++++.++++.|.+.+++.+||+|++ |++.|+|+..|++++......... .+ ...
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~~~----------~~-------~~~- 63 (123)
T cd04627 2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSFP----------GL-------DPL- 63 (123)
T ss_pred CceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHHhcc----------ch-------hhh-
Confidence 57789999999999999998899999999987 899999999999874321100000 00 000
Q ss_pred hhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEcccC
Q 026495 173 KTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSKG 229 (237)
Q Consensus 173 ~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d~ 229 (237)
......+.++|..++.++.+++++.+|++.|.+++.+++||+|++|+++|+||.+|=
T Consensus 64 ~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di 120 (123)
T cd04627 64 YPIPLRDLTIGTSDVISINGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDV 120 (123)
T ss_pred hhhhhhhcccCcCCceEeCCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHh
Confidence 000112334677888899999999999999999999999999988999999999873
No 24
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.61 E-value=1.2e-14 Score=107.25 Aligned_cols=118 Identities=31% Similarity=0.482 Sum_probs=94.4
Q ss_pred ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHh
Q 026495 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (237)
Q Consensus 94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (237)
++.+++++.++.++.+.|.+.+++.+||++++|+++|+|+..||.+......... .+... . ..
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~~-----------~~~~~----~--~~ 65 (124)
T cd04600 3 DVVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLLRHARPDGRRP-----------LRGRL----R--GR 65 (124)
T ss_pred CcEEeCCCCCHHHHHHHHHHcCCceeeEECCCCCEEEEEEHHHHHhhhcccccch-----------hhhhh----h--cc
Confidence 6788999999999999999999999999998899999999999986432111000 00000 0 01
Q ss_pred hcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495 174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK 228 (237)
Q Consensus 174 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d 228 (237)
....++.++|.++++++++++++.++++.|.+.+.+.+||++++|+++|+|+++|
T Consensus 66 ~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~d 120 (124)
T cd04600 66 DKPETVGDIMSPPVVTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTD 120 (124)
T ss_pred cccccHHHhccCCCeeeCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHH
Confidence 1234688899888999999999999999999999999999998899999999876
No 25
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.61 E-value=1.3e-14 Score=105.89 Aligned_cols=111 Identities=28% Similarity=0.321 Sum_probs=90.3
Q ss_pred ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHh
Q 026495 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (237)
Q Consensus 94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (237)
++++++.++++.++.+.|.+.+.+.+||+|++|+++|+++.+|+.++...... . .. ..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~-~--------------------~~-~~ 59 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKLKGLEN-L--------------------DL-ER 59 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECCCCcEEEEEeHHHHHHHhhccCc-h--------------------hH-HH
Confidence 57889999999999999999999999999988999999999999875321100 0 00 00
Q ss_pred hcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495 174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK 228 (237)
Q Consensus 174 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d 228 (237)
....++.++|.+++.++.+++++.++++.|.+.+ .+||++++|+++|+||++|
T Consensus 60 ~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~~~~~~~Gvit~~d 112 (116)
T cd04643 60 LVDLKVIDVMNTDVPVIIDDADIEEILHLLIDQP--FLPVVDDDGIFIGIITRRE 112 (116)
T ss_pred HhCCcHHHHhcCCCceecCCCCHHHHHHHHhcCC--ceeEEeCCCeEEEEEEHHH
Confidence 0135688899888999999999999999998865 5899998899999999876
No 26
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.61 E-value=1.7e-14 Score=104.55 Aligned_cols=106 Identities=24% Similarity=0.315 Sum_probs=91.2
Q ss_pred ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHh
Q 026495 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (237)
Q Consensus 94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (237)
++.+++.++++.++++.|.+.+++.+||+|++|+++|+++.+|+..+.... .
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~----------------------------~ 53 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNEEKLKGVVTFTDILDLDLFE----------------------------S 53 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEEcCCCCEEEEEehHHhHHHHhhc----------------------------c
Confidence 577899999999999999999999999999889999999999998642100 0
Q ss_pred hcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495 174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK 228 (237)
Q Consensus 174 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d 228 (237)
....++.++|.++++++.+++++.++++.|.+++.+.+||+++ |+++|+||+.|
T Consensus 54 ~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~d 107 (111)
T cd04626 54 FLEKKVFNIVSQDVFYVNEEDTIDEALDIMREKQIGRLPVVDD-NKLIGVVRTKD 107 (111)
T ss_pred cccCcHHHHhcCCcEEEcCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEhHH
Confidence 0134688889888899999999999999999999999999996 99999999876
No 27
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.60 E-value=2.5e-14 Score=103.62 Aligned_cols=108 Identities=30% Similarity=0.478 Sum_probs=91.4
Q ss_pred ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHh
Q 026495 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (237)
Q Consensus 94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (237)
++..++++.++.++.+.|.+.+++.+||+|++++++|+++.+|+.++...... .
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~--------------------------~ 55 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKVALRGA--------------------------S 55 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEehHHHHHHHhhcCC--------------------------C
Confidence 57788999999999999999999999999988999999999999864321100 0
Q ss_pred hcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495 174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK 228 (237)
Q Consensus 174 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d 228 (237)
....++.++|.+++.++.+++++.++++.|.+.+.+++||+++ |+++|+|+..|
T Consensus 56 ~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~-~~~~Gvit~~d 109 (113)
T cd04623 56 ALDTPVSEIMTRNVITVTPDDTVDEAMALMTERRFRHLPVVDG-GKLVGIVSIGD 109 (113)
T ss_pred ccccCHHHhcCCCcEEECCCCcHHHHHHHHHHcCCCEeEEEeC-CEEEEEEEHHH
Confidence 1134688889888899999999999999999999999999986 99999999875
No 28
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.60 E-value=2.7e-14 Score=101.44 Aligned_cols=91 Identities=21% Similarity=0.362 Sum_probs=82.9
Q ss_pred ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHh
Q 026495 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (237)
Q Consensus 94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (237)
+++.+.+++++.++++.|.+++.+.+||+|++|+++|+++.+|+.+.
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~--------------------------------- 48 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLDDDGKLSGIITERDLIAK--------------------------------- 48 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHhcC---------------------------------
Confidence 57889999999999999999999999999988999999999999852
Q ss_pred hcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495 174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK 228 (237)
Q Consensus 174 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d 228 (237)
. .+.++.+++++.++++.|.+++.+++||++++|+++|+||++|
T Consensus 49 ---~--------~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~~~~Giit~~d 92 (96)
T cd04614 49 ---S--------EVVTATKRTTVSECAQKMKRNRIEQIPIINGNDKLIGLLRDHD 92 (96)
T ss_pred ---C--------CcEEecCCCCHHHHHHHHHHhCCCeeeEECCCCcEEEEEEHHH
Confidence 0 1778999999999999999999999999997789999999876
No 29
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.59 E-value=3.2e-14 Score=103.14 Aligned_cols=107 Identities=23% Similarity=0.322 Sum_probs=92.0
Q ss_pred ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHh
Q 026495 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (237)
Q Consensus 94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (237)
++.+++.+.++.++.+.|.+.+++.+||+|++|+++|+++..|+++..... .
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~l~~~~~~~----------------------------~ 53 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIVRAVAAG----------------------------I 53 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEeeHHHHHHHHhcc----------------------------C
Confidence 467889999999999999999999999999889999999999998642110 1
Q ss_pred hcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495 174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK 228 (237)
Q Consensus 174 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d 228 (237)
....++.++|.++++.+.+++++.++++.|.+++...+||++++|+++|+++++|
T Consensus 54 ~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~g~~~Gilt~~d 108 (112)
T cd04624 54 DLDTPVSEIMTRDLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKGGELVGVISIRD 108 (112)
T ss_pred CCccCHHHhccCCCEEECCCCcHHHHHHHHHHcCccEEEEEcCCCcEEEEEEHHH
Confidence 1235678888888999999999999999999999889999997799999999875
No 30
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.59 E-value=2.7e-14 Score=103.68 Aligned_cols=107 Identities=22% Similarity=0.341 Sum_probs=91.3
Q ss_pred eeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHhh
Q 026495 95 LHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKT 174 (237)
Q Consensus 95 ~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (237)
+..+.+++++.++.+.|.+.+.+.+||+|++|+++|+++.+|+.+..... ...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~dl~~~~~~~---------------------------~~~ 55 (113)
T cd04615 3 PSCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLSYALES---------------------------EEL 55 (113)
T ss_pred CEEeeCCCcHHHHHHHHHHcCCceEeEEcCCCCEEEEEEHHHHHHhhhhh---------------------------hhh
Confidence 56789999999999999999999999999889999999999998631100 011
Q ss_pred cCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495 175 NGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK 228 (237)
Q Consensus 175 ~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d 228 (237)
...++.++|.+++.++.+++++.++++.|.+++...+||++++|+++|+++..|
T Consensus 56 ~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvvt~~d 109 (113)
T cd04615 56 KDAKVREVMNSPVITIDANDSIAKARWLMSNNNISRLPVLDDKGKVGGIVTEDD 109 (113)
T ss_pred cCCcHHHhccCCceEECCCCcHHHHHHHHHHcCCCeeeEECCCCeEEEEEEHHH
Confidence 235688899888999999999999999999999999999998889999999876
No 31
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.59 E-value=4e-14 Score=102.29 Aligned_cols=105 Identities=30% Similarity=0.369 Sum_probs=90.9
Q ss_pred ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHh
Q 026495 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (237)
Q Consensus 94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (237)
++.+++.++++.++.+.|.+.+++.+||+++ |+++|+++.+|++++... .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~~l~~~~~~-----------------------------~ 51 (110)
T cd04588 2 PLITLNPNATLREAARLFNTHHIHGAPVVDD-GKLVGIVTLSDIAHAIAR-----------------------------G 51 (110)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEHHHHHHHHhc-----------------------------c
Confidence 5778999999999999999999999999998 999999999999864210 0
Q ss_pred hcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495 174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK 228 (237)
Q Consensus 174 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d 228 (237)
....++.++|..++.++++++++.++++.|.+.+.+.+||++++|+++|+|+++|
T Consensus 52 ~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~d 106 (110)
T cd04588 52 LELAKVKDVMTKDVITIDEDEQLYDAIRLMNKHNVGRLIVTDDEGRPVGIITRTD 106 (110)
T ss_pred ccccCHHHHhcCCceEECCCCCHHHHHHHHHhcCCCEEEEECCCCCEEEEEEhHH
Confidence 1124677888888899999999999999999999999999997799999999876
No 32
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.59 E-value=2.9e-14 Score=103.45 Aligned_cols=108 Identities=31% Similarity=0.437 Sum_probs=92.7
Q ss_pred ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHh
Q 026495 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (237)
Q Consensus 94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (237)
+++++++++++.++.+.|.+.+++.+||+|++|+++|+++..|+.++..... .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~---------------------------~ 54 (114)
T cd04613 2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIREILFDPS---------------------------L 54 (114)
T ss_pred CceeeCCCCcHHHHHHHHHhCCCcceeEECCCCCEEEEEEHHHHHHHHhccc---------------------------c
Confidence 5788999999999999999999999999998899999999999986421100 0
Q ss_pred hcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcC-CCcEEEEEEccc
Q 026495 174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDA-DGWNYHKRKCSK 228 (237)
Q Consensus 174 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~~~~iGvIt~~d 228 (237)
....++.++|.+++.++.+++++.++++.|...+.+.+||+++ +|+++|+++..|
T Consensus 55 ~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~d 110 (114)
T cd04613 55 YDLVVASDIMTKPPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDPGKLLGILSRSD 110 (114)
T ss_pred cccEEHHHhccCCCcEEcCCCCHHHHHHHHhhCCccEeeEEeCCCCEEEEEEEhHH
Confidence 0125688899888999999999999999999999999999987 789999999876
No 33
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=99.58 E-value=1.3e-14 Score=121.90 Aligned_cols=114 Identities=30% Similarity=0.300 Sum_probs=99.7
Q ss_pred cccccccccccCc-eeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccc
Q 026495 82 VYTVGDFMTTKEE-LHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDST 160 (237)
Q Consensus 82 ~~~v~~im~~~~~-~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~ 160 (237)
.++++++|.+ + ++++.+++++.++++.|.+.+.+.+||+|++|+++|+|+..|+.++...
T Consensus 154 ~~~v~~im~~--~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Givt~~dl~~~~~~----------------- 214 (268)
T TIGR00393 154 LVKVKDLMQT--TDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLRRALLG----------------- 214 (268)
T ss_pred hhhHHHHhCC--CCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEEEcHHHHHHHhc-----------------
Confidence 3688999988 6 8899999999999999999999999999988999999999999864210
Q ss_pred hhhHHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEE
Q 026495 161 WKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRK 225 (237)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt 225 (237)
......++.++|.++++++.+++++.+|++.|.+++.+.+||+|++|+++|+|+
T Consensus 215 -----------~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GvI~ 268 (268)
T TIGR00393 215 -----------GGSLKSEVRDFMTLGPKTFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVLH 268 (268)
T ss_pred -----------CCcccCcHHHhCCCCCeEECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEEEC
Confidence 011246789999988999999999999999999999999999998899999985
No 34
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.58 E-value=1.1e-14 Score=134.80 Aligned_cols=122 Identities=20% Similarity=0.195 Sum_probs=104.3
Q ss_pred CCCCcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCccccc
Q 026495 78 PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEV 157 (237)
Q Consensus 78 ~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~ 157 (237)
..+..++++|+|++ +..++++++++.++.+.|.+++.+.+||+|++|+++|+|+.+|+.+.....
T Consensus 442 ~~L~~~~V~dim~~--~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~g~lvGiVt~~dL~~~l~~~------------- 506 (574)
T PRK01862 442 ERLRTTQMRELIQP--AQTVVPPTASVADMTRVFLEYPVKYLYVVDDDGRFRGAVALKDITSDLLDK------------- 506 (574)
T ss_pred hHHhhCcHHHHhcC--CCceeCCCCCHHHHHHHHHhCCCceEEEEcCCCeEEEEEEHHHHHHHhhcc-------------
Confidence 34567899999998 788999999999999999999999999999989999999999998632100
Q ss_pred ccchhhHHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCC--CcEEEEEEccc
Q 026495 158 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDAD--GWNYHKRKCSK 228 (237)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~--~~~iGvIt~~d 228 (237)
......++.++|+++++++++++++.++++.|.+++.+.+||+|++ ++++|+||++|
T Consensus 507 --------------~~~~~~~v~dim~~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~D 565 (574)
T PRK01862 507 --------------RDTTDKTAADYAHTPFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTS 565 (574)
T ss_pred --------------cccccchHHHhccCCCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHH
Confidence 0111356889999989999999999999999999999999999865 48999999987
No 35
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=99.58 E-value=3.6e-14 Score=102.40 Aligned_cols=103 Identities=41% Similarity=0.548 Sum_probs=89.3
Q ss_pred ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHh
Q 026495 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (237)
Q Consensus 94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (237)
++..+..+.++.++.+.|.+.+...+||+|++|+++|+++.+++.+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~-------------------------------- 50 (110)
T cd04601 3 DPITVSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRDLRFET-------------------------------- 50 (110)
T ss_pred CCeEeCCCCcHHHHHHHHHHcCCceEEEEcCCCEEEEEEEhhHeeecc--------------------------------
Confidence 577899999999999999999999999999889999999999987421
Q ss_pred hcCCccccccccCceEEcC-CCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495 174 TNGKMVGDLMTPAPVVVRE-TTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK 228 (237)
Q Consensus 174 ~~~~~v~~im~~~~~~v~~-~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d 228 (237)
..+.++.++|...+..+.. ++++.++++.|.+.+.+.+||++++|+++|+|+++|
T Consensus 51 ~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~d 106 (110)
T cd04601 51 DLDKPVSEVMTPENLLTTVEGTSLEEALELLHEHKIEKLPVVDDEGKLKGLITVKD 106 (110)
T ss_pred cCCCCHHHhcccCceEEecCCCCHHHHHHHHHHhCCCeeeEEcCCCCEEEEEEhhh
Confidence 1135678888776777777 999999999999999999999998899999999876
No 36
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.58 E-value=3.9e-14 Score=104.30 Aligned_cols=117 Identities=31% Similarity=0.396 Sum_probs=93.8
Q ss_pred ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHh
Q 026495 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (237)
Q Consensus 94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (237)
++.++.+++++.++.+.|.+.+++.+||++++|+++|+++..++++....... ... .. ....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~-~~~-------~~----------~~~~ 63 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLLRAALSSLS-DNG-------EE----------SLTK 63 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCcccccEECCCCCEEEEEEHHHHHHHhccccc-ccc-------cc----------cccc
Confidence 47789999999999999999999999999988999999999999875321100 000 00 0001
Q ss_pred hcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495 174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK 228 (237)
Q Consensus 174 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d 228 (237)
....++.++|..+++++.+++++.++++.|.+.+.+.+||++++|+++|+||..|
T Consensus 64 ~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~d 118 (122)
T cd04803 64 ERDVPVAEVMKTDVLTVTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSD 118 (122)
T ss_pred ccCcCHHHhhCCCCeEeCCCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHH
Confidence 1245688889888999999999999999999999999999997789999999876
No 37
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.58 E-value=3.5e-14 Score=107.20 Aligned_cols=129 Identities=22% Similarity=0.266 Sum_probs=94.6
Q ss_pred ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhh-HHHHHHHHH
Q 026495 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKT-FNEVQKLLS 172 (237)
Q Consensus 94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 172 (237)
+++++++++++.++++.|.+.+.+.+||+|++|+++|+++..|+++......... .+..++.|.. .......+.
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~~~~~Giv~~~dl~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 76 (135)
T cd04621 2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDNGKPVGVITYRDLAFAEFEDNERG-----LPKKSIKMKRKAGQKRYRYV 76 (135)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCcceEECCCCCEEEEEeHHHHHHHhhcccccc-----cchhhhhhhhhccccccccc
Confidence 5778999999999999999999999999998899999999999987542111000 0000000000 000000011
Q ss_pred hhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495 173 KTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK 228 (237)
Q Consensus 173 ~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d 228 (237)
.....++.++|.++++.+.+++++.++++.|.+++.+.+||+++ |+++|+|+.+|
T Consensus 77 ~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~Gvit~~d 131 (135)
T cd04621 77 KEVPLVAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVDN-DNIVGVITKTD 131 (135)
T ss_pred ccccccHHHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEeC-CEEEEEEEHHH
Confidence 11245788999888899999999999999999999999999985 99999999876
No 38
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.58 E-value=3.7e-14 Score=102.96 Aligned_cols=108 Identities=29% Similarity=0.329 Sum_probs=92.2
Q ss_pred ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHh
Q 026495 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (237)
Q Consensus 94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (237)
+++++++++++.++.+.|.+.+.+.+||+|++|+++|+++..++.+...... .
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~i~~~~~~~~---------------------------~ 55 (114)
T cd04604 3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDEDGRLVGIFTDGDLRRALEKGL---------------------------D 55 (114)
T ss_pred cccccCCCCcHHHHHHHHHhcCccEEEEEcCCCCEEEEechHHHHHHHhccC---------------------------c
Confidence 5778899999999999998888899999998899999999999986432100 0
Q ss_pred hcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495 174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK 228 (237)
Q Consensus 174 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d 228 (237)
....++.++|.+++..+++++++.++++.|..++...+||++++|+++|+|+..|
T Consensus 56 ~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~iG~it~~d 110 (114)
T cd04604 56 ILTLPVADVMTRNPKTIDPDALAAEALELMEENKITALPVVDDNGRPVGVLHIHD 110 (114)
T ss_pred cccCCHHHhhccCCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEEEHHH
Confidence 1124688899888899999999999999999999999999997899999999876
No 39
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.58 E-value=3.9e-14 Score=105.25 Aligned_cols=121 Identities=21% Similarity=0.266 Sum_probs=90.1
Q ss_pred ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHh
Q 026495 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (237)
Q Consensus 94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (237)
++.+++++.++.++++.|.+++.+.+||+|++|+++|+++..|+++........... +. ..+.... .
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~----~~-----~~~~~~~---~- 68 (126)
T cd04642 2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKLIGNISASDLKGLLLSPDDLLLY----RT-----ITFKELS---E- 68 (126)
T ss_pred CeEEECCCccHHHHHHHHHHhCCCcccEECCCCcEEEEEEHHHhhhhhcCcchhhcc----cc-----hhhhhhh---h-
Confidence 578899999999999999999999999999889999999999998753211100000 00 0000000 0
Q ss_pred hcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495 174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK 228 (237)
Q Consensus 174 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d 228 (237)
.-....+.|..++.++++++++.++++.|.+++.+++||+|++|+++|+||.+|
T Consensus 69 -~~~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~~d 122 (126)
T cd04642 69 -KFTDSDGVKSRPLITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTD 122 (126)
T ss_pred -hcccccccccCCCeEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEHHH
Confidence 001223456677889999999999999999999999999998899999999875
No 40
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=99.58 E-value=3.8e-14 Score=103.43 Aligned_cols=103 Identities=34% Similarity=0.488 Sum_probs=88.9
Q ss_pred ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcC---CCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHH
Q 026495 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDD---DWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKL 170 (237)
Q Consensus 94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~---~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (237)
++.++..++++.++++.|.+.+...+||+|+ +|+++|+++..|++...
T Consensus 3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~~----------------------------- 53 (114)
T cd04602 3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFLT----------------------------- 53 (114)
T ss_pred CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhhh-----------------------------
Confidence 4678899999999999999888899999997 68999999999987421
Q ss_pred HHhhcCCccccccccCceEEcC--CCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495 171 LSKTNGKMVGDLMTPAPVVVRE--TTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK 228 (237)
Q Consensus 171 ~~~~~~~~v~~im~~~~~~v~~--~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d 228 (237)
....++.++|...+..+.. ++++.++++.|.+++.+++||++++|+++|+||++|
T Consensus 54 ---~~~~~v~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~~~~~~Gvit~~d 110 (114)
T cd04602 54 ---DSETPLSEVMTPREVLVVAPTGITLEEANEILRESKKGKLPIVNDDGELVALVTRSD 110 (114)
T ss_pred ---ccCCCHHHhcCCCceEEECCCCCCHHHHHHHHHhcCCCceeEECCCCeEEEEEEHHH
Confidence 1124588899877777866 999999999999999999999998899999999876
No 41
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.57 E-value=2.7e-14 Score=103.75 Aligned_cols=109 Identities=32% Similarity=0.407 Sum_probs=91.7
Q ss_pred ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHh
Q 026495 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (237)
Q Consensus 94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (237)
++.+++++.++.++.+.|.+.+.+.+||+|++|+++|+++..++++...... ...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~-------------------------~~~ 56 (114)
T cd04629 2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQLLESS-------------------------YHC 56 (114)
T ss_pred CCeEeCCCCCHHHHHHHHHhcCCCCccEECCCCeEEEEeehHHHHHHhhhhh-------------------------hcc
Confidence 5778999999999999999888889999998899999999999986421100 001
Q ss_pred hcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495 174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK 228 (237)
Q Consensus 174 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d 228 (237)
....++.++|.++++.+.+++++.++++.|.+++.+.+||+++ |+++|+||.+|
T Consensus 57 ~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvit~~d 110 (114)
T cd04629 57 DGVATVRDIMTTEVLTVSPDDSIVDLAQLMLKAKPKRYPVVDD-GKLVGQISRRD 110 (114)
T ss_pred CCCccHHHHhccCceEECCCCcHHHHHHHHHHhCCCccCEEEC-CEEEEEEEHHH
Confidence 1245688899888899999999999999999999999999996 99999999876
No 42
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.57 E-value=5.1e-14 Score=100.79 Aligned_cols=100 Identities=29% Similarity=0.434 Sum_probs=88.7
Q ss_pred ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHh
Q 026495 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (237)
Q Consensus 94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (237)
++.++++++++.++++.|.+.+.+.+||+| +|+++|+++.+++.+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d-~~~~~Giv~~~~l~~~~-------------------------------- 48 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEKHRIGGLPVVE-DGKLVGIITSRDVRRAH-------------------------------- 48 (105)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEehHHhhccc--------------------------------
Confidence 467899999999999999988989999998 58999999999998531
Q ss_pred hcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495 174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK 228 (237)
Q Consensus 174 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d 228 (237)
...++.++|.+++.++++++++.++++.|.+++...+||+++ |+++|+||..|
T Consensus 49 -~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~~ 101 (105)
T cd04599 49 -PNRLVADAMTREVVTISPEASLLEAKRLMEEKKIERLPVLRE-RKLVGIITKGT 101 (105)
T ss_pred -ccCCHHHHccCCCEEECCCCCHHHHHHHHHHcCCCEeeEEEC-CEEEEEEEHHH
Confidence 124577889888999999999999999999999999999996 99999999876
No 43
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.57 E-value=1.2e-14 Score=108.11 Aligned_cols=108 Identities=23% Similarity=0.181 Sum_probs=90.4
Q ss_pred ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHh
Q 026495 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (237)
Q Consensus 94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (237)
++.+++++.++.++++.|.+++.+.+||+|++|+++|+++.+|+++..... ..
T Consensus 3 ~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~~~~---------------------------~~ 55 (124)
T cd04608 3 APVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLSSG---------------------------KV 55 (124)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHHh---------------------------cc
Confidence 578899999999999999999999999999889999999999998632110 01
Q ss_pred hcCCccccccccCceEEcCCCCHHHHHHHHHH---------cCCcEEEEEcCCCcEEEEEEccc
Q 026495 174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLE---------TKYRRLPVVDADGWNYHKRKCSK 228 (237)
Q Consensus 174 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~---------~~~~~lpVvd~~~~~iGvIt~~d 228 (237)
..+.++.++|.+++.++.+++++.++.+++.. .+...+||++++|+++|+||++|
T Consensus 56 ~~~~~v~~im~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~~D 119 (124)
T cd04608 56 QPSDPVSKALYKQFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKID 119 (124)
T ss_pred CCCCcHHHHhhccceecCCCCCHHHHHhhcccCCceEEEeccccccccccccccceEEEEehhH
Confidence 23578999999999999999999999996543 35667888887899999999987
No 44
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.57 E-value=6.8e-14 Score=101.20 Aligned_cols=104 Identities=28% Similarity=0.394 Sum_probs=91.0
Q ss_pred ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHh
Q 026495 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (237)
Q Consensus 94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (237)
++++++.+.++.++.+.|.+.++..+||+|+ |+++|+++..|+.+.... .
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~dl~~~~~~-----------------------------~ 52 (110)
T cd04595 3 PVKTVRPEATIEEARELLLRYGHTALPVVEG-GRVVGIISRRDVEKALRH-----------------------------G 52 (110)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCeeeEeeC-CEEEEEEEHHHHHHHHhc-----------------------------c
Confidence 5788999999999999999889999999998 999999999999864210 0
Q ss_pred hcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495 174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK 228 (237)
Q Consensus 174 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d 228 (237)
....++.++|.+++..+.+++++.++++.|.+++.+.+||++ +|+++|+||+.|
T Consensus 53 ~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Gvvt~~d 106 (110)
T cd04595 53 LGHAPVKDYMSTDVVTVPPDTPLSEVQELMVEHDIGRVPVVE-DGRLVGIVTRTD 106 (110)
T ss_pred cccCcHHHHhcCCCEEECCCCcHHHHHHHHHHcCCCeeEEEe-CCEEEEEEEhHH
Confidence 124578889988899999999999999999999999999999 799999999876
No 45
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.57 E-value=1.1e-14 Score=109.42 Aligned_cols=116 Identities=20% Similarity=0.255 Sum_probs=99.0
Q ss_pred CcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccc
Q 026495 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDST 160 (237)
Q Consensus 81 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~ 160 (237)
..++++.+|+. +++.+.+++++.++.++|.+.+++.+||+++ |+++|-||.+++.+......
T Consensus 63 ~~ita~~iM~s--pvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~-~k~VGsItE~~iv~~~le~~--------------- 124 (187)
T COG3620 63 TRITAKTIMHS--PVVSVSPDDSISDVVNLMRDKGISQLPVIEE-DKVVGSITENDIVRALLEGM--------------- 124 (187)
T ss_pred ceEeHhhhccC--CeeEECchhhHHHHHHHHHHcCCccCceeeC-CeeeeeecHHHHHHHHhccc---------------
Confidence 56788999999 8999999999999999999999999999996 89999999999997532110
Q ss_pred hhhHHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495 161 WKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK 228 (237)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d 228 (237)
+......+.++|..++++|+++.++..+.+++..++ .+.|++ +|+++|+||+.|
T Consensus 125 -----------e~i~~~~vr~vM~e~fP~Vs~~~~l~vI~~LL~~~~--AVlV~e-~G~~vGIITk~D 178 (187)
T COG3620 125 -----------ESIRSLRVREVMGEPFPTVSPDESLNVISQLLEEHP--AVLVVE-NGKVVGIITKAD 178 (187)
T ss_pred -----------cchhhhhHHHHhcCCCCcCCCCCCHHHHHHHHhhCC--eEEEEe-CCceEEEEeHHH
Confidence 112356789999999999999999999999988765 466775 899999999976
No 46
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=99.57 E-value=6.9e-14 Score=101.48 Aligned_cols=108 Identities=34% Similarity=0.488 Sum_probs=90.4
Q ss_pred ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHh
Q 026495 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (237)
Q Consensus 94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (237)
++.++.++.++.++++.|.+.+.+.+||+++ |+++|+++..|++......+. .
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~~~~~--------------------------~ 54 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG-NKLVGIFTSKDIALRVVAQGL--------------------------D 54 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHHHHhcCC--------------------------C
Confidence 4678899999999999999888899999997 999999999999742211000 0
Q ss_pred hcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495 174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK 228 (237)
Q Consensus 174 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d 228 (237)
....++.++|.+++.++.+++++.++++.|.+++.+++||++++|+++|+|+.+|
T Consensus 55 ~~~~~v~~i~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvvs~~d 109 (113)
T cd04587 55 PESTLVERVMTPNPVCATSDTPVLEALHLMVQGKFRHLPVVDKSGQVVGLLDVTK 109 (113)
T ss_pred cCcCCHHHhcCCCCeEEcCCCCHHHHHHHHHHcCCCcccEECCCCCEEEEEEHHH
Confidence 0125688899888899999999999999999999999999997799999999876
No 47
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=99.57 E-value=8.7e-14 Score=100.52 Aligned_cols=106 Identities=30% Similarity=0.398 Sum_probs=91.0
Q ss_pred ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHh
Q 026495 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (237)
Q Consensus 94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (237)
++.+++++.++.++.+.|.+.+.+.+||+|+ |+++|+++.+|+.++.... .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~~l~~~~~~~----------------------------~ 52 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRERRISSIVVVDD-GRPLGIVTERDILRLLASG----------------------------P 52 (111)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEeHHHHHHHHhcC----------------------------C
Confidence 4678999999999999999988999999987 9999999999998642100 0
Q ss_pred hcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495 174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK 228 (237)
Q Consensus 174 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d 228 (237)
....++.++|.++++.+.+++++.++++.|.+.+.+.+||+|++|+++|+|+.+|
T Consensus 53 ~~~~~v~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~~~~~~Gvi~~~d 107 (111)
T cd04611 53 DLQTPVGEVMSSPLLTVPADTSLYDARQLMREHGIRHLVVVDDDGELLGLLSQTD 107 (111)
T ss_pred CCCcCHHHhcCCCceEECCCCCHHHHHHHHHHcCCeEEEEECCCCcEEEEEEhHH
Confidence 0235688889888899999999999999999999999999997799999999875
No 48
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.57 E-value=2.6e-14 Score=106.30 Aligned_cols=111 Identities=24% Similarity=0.347 Sum_probs=87.7
Q ss_pred ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHH-
Q 026495 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLS- 172 (237)
Q Consensus 94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 172 (237)
++.++..++++.++++.|.+.+.+.+||+|++|+++|+++.+|+.+.... .....
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~------------------------~~~~~~ 57 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAVDLLGEEPI------------------------KRIQEG 57 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHhhChhh------------------------HHHHHc
Confidence 36788999999999999998999999999988999999999999852100 00000
Q ss_pred --hhcCCccccccccCceEE------cCCCCHHHHHHHHHHcCCcEEEEEcCC-CcEEEEEEccc
Q 026495 173 --KTNGKMVGDLMTPAPVVV------RETTNLEDAARLLLETKYRRLPVVDAD-GWNYHKRKCSK 228 (237)
Q Consensus 173 --~~~~~~v~~im~~~~~~v------~~~~~l~~a~~~m~~~~~~~lpVvd~~-~~~iGvIt~~d 228 (237)
.....++.++|.++...+ .+++++.++++.|.+++.+++||+|++ |+++|+||++|
T Consensus 58 ~~~~~~~~v~~im~~~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~d 122 (126)
T cd04640 58 GISRSELTVADVMTPKEDLKALDLEELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSD 122 (126)
T ss_pred CCCchheEHHHhcCchhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHH
Confidence 112356888997654333 368999999999999999999999976 79999999876
No 49
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.56 E-value=5.8e-14 Score=103.80 Aligned_cols=119 Identities=28% Similarity=0.370 Sum_probs=93.0
Q ss_pred ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCC-CcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHH
Q 026495 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLS 172 (237)
Q Consensus 94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (237)
++.++.++.++.++++.|.+.+...+||+|++ |+++|+|+..|+.+.+..... ... ... .. ..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~~~~-~~~---~~~--------~~----~~ 65 (125)
T cd04631 2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEK-FNK---IKT--------GN----GL 65 (125)
T ss_pred CceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhccch-hcc---ccc--------cc----cc
Confidence 57788999999999999999999999999987 999999999999865321100 000 000 00 00
Q ss_pred hhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495 173 KTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK 228 (237)
Q Consensus 173 ~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d 228 (237)
.....++.++|.++++.+++++++.++++.|.+.+.+.+||++++|+++|+||++|
T Consensus 66 ~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~d 121 (125)
T cd04631 66 EAINEPVRSIMTRNVITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERD 121 (125)
T ss_pred hhhhcCHHHHhcCCceEeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHH
Confidence 01134688888888999999999999999999999999999997799999999876
No 50
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.56 E-value=5.5e-14 Score=103.47 Aligned_cols=117 Identities=23% Similarity=0.365 Sum_probs=93.1
Q ss_pred ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHh
Q 026495 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (237)
Q Consensus 94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (237)
++.++.+++++.++.+.|.+.+++.+||+|++|+++|+++..|+++....... .+ . ......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~--------~~--~--------~~~~~~ 63 (122)
T cd04635 2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQKAGELIGIITRRDIIRAGSVRTS--------VE--D--------QQRTQT 63 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcccEECCCCcEEEEEEcHHHHhhcccccc--------cc--c--------hhhhhh
Confidence 57889999999999999999999999999988999999999999863211000 00 0 000000
Q ss_pred hcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495 174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK 228 (237)
Q Consensus 174 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d 228 (237)
....++.++|.+++..+++++++.++++.|.+.+.+.+||++++|+++|++|+.|
T Consensus 64 ~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~d 118 (122)
T cd04635 64 KASPTVEKIMSTPVYSVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHD 118 (122)
T ss_pred hccCcHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHH
Confidence 1245678888888899999999999999999999999999998899999999875
No 51
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.56 E-value=8.3e-14 Score=100.79 Aligned_cols=105 Identities=26% Similarity=0.329 Sum_probs=88.9
Q ss_pred ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCC-CcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHH
Q 026495 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLS 172 (237)
Q Consensus 94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (237)
++.+++++.++.++.+.|.+.+.+.+||++++ |+++|+++..|+.+....
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~----------------------------- 52 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAE----------------------------- 52 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHc-----------------------------
Confidence 57889999999999999999899999999988 999999999999874210
Q ss_pred hhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495 173 KTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK 228 (237)
Q Consensus 173 ~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d 228 (237)
.....++.++| .++.++.+++++.++++.|.+++.+.+||++++|+++|+||++|
T Consensus 53 ~~~~~~~~~~~-~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~d 107 (111)
T cd04590 53 GEEDLDLRDLL-RPPLFVPESTPLDDLLEEMRKERSHMAIVVDEYGGTAGLVTLED 107 (111)
T ss_pred CCCcCCHHHHh-cCCeecCCCCcHHHHHHHHHhcCCcEEEEEECCCCEEEEeEHHH
Confidence 00013456665 46788999999999999999999999999998899999999876
No 52
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.56 E-value=8.7e-14 Score=99.93 Aligned_cols=101 Identities=32% Similarity=0.491 Sum_probs=89.3
Q ss_pred ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHh
Q 026495 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (237)
Q Consensus 94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (237)
++++++.+.++.++.+.|.+.+...+||+|+ ++++|+++..||+..
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~g~v~~~~l~~~--------------------------------- 48 (107)
T cd04610 3 DVITVSPDNTVKDVIKLIKETGHDGFPVVDN-GKVVGIVSARDLLGK--------------------------------- 48 (107)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhcc---------------------------------
Confidence 5788999999999999998888889999997 999999999999842
Q ss_pred hcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495 174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK 228 (237)
Q Consensus 174 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d 228 (237)
....++.++|.+.+.++.+++++.++++.|.+++...+||++++|+++|+|+..|
T Consensus 49 ~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvi~~~d 103 (107)
T cd04610 49 DPDETVEEIMSKDLVVAVPEMDIMDAARVMFRTGISKLPVVDENNNLVGIITNTD 103 (107)
T ss_pred CccccHHHhCCCCCeEECCCCCHHHHHHHHHHhCCCeEeEECCCCeEEEEEEHHH
Confidence 0124688889888899999999999999999999999999998899999999876
No 53
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=99.56 E-value=1.1e-13 Score=100.18 Aligned_cols=106 Identities=21% Similarity=0.232 Sum_probs=90.0
Q ss_pred ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHh
Q 026495 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (237)
Q Consensus 94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (237)
.++.++.+.++.++.+.|.+.+...++|+|+ |++.|+++.+|+.+...... .
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~~~~---------------------------~ 53 (111)
T cd04589 2 PPLIVDASTSIRDAARLMREHGADALLVRDG-DPRLGIVTRTDLLDAVLLDG---------------------------L 53 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEecC-CeEEEEEEHHHHHHHHHcCC---------------------------C
Confidence 4678899999999999999999999999997 89999999999986421100 0
Q ss_pred hcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495 174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK 228 (237)
Q Consensus 174 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d 228 (237)
....++.++|.+++..+++++++.++++.|.+++.+.+||++ +|+++|+||.+|
T Consensus 54 ~~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~~~~~G~it~~d 107 (111)
T cd04589 54 PSSTPVGEIATFPLITVDPDDFLFNALLLMTRHRIHRVVVRE-GGEVVGVLEQTD 107 (111)
T ss_pred CCCCCHHHHhCCCcEEECCCCcHHHHHHHHHHhCccEEEEee-CCEEEEEEEhHH
Confidence 123568889988899999999999999999999999999998 589999999875
No 54
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.56 E-value=3.7e-14 Score=127.40 Aligned_cols=116 Identities=23% Similarity=0.300 Sum_probs=101.7
Q ss_pred CCCCcccccccccccCceeEEcCCCCHHHHHHHHHH-----CCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCC
Q 026495 78 PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVE-----KRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNS 152 (237)
Q Consensus 78 ~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~-----~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~ 152 (237)
..+...+++++|++ ++.++++++++.++.+.|.+ .+...+||+|++++++|+|+.+|++..
T Consensus 126 l~~~e~tvg~iMt~--~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~~~l~GvV~l~dLl~a------------ 191 (449)
T TIGR00400 126 LSYSDDSAGRIMTI--EYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNESKHLKGVLSIRDLILA------------ 191 (449)
T ss_pred hCCCcchHHHhCcC--ceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCCCeEEEEEEHHHHhcC------------
Confidence 44567799999998 89999999999999999975 345678899988999999999999742
Q ss_pred cccccccchhhHHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495 153 MFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK 228 (237)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d 228 (237)
..+.+++++|.++++++++++++.++++.|.+++...+||||++|+++|+||.+|
T Consensus 192 ---------------------~~~~~v~~im~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g~lvGiIt~~D 246 (449)
T TIGR00400 192 ---------------------KPEEILSSIMRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVDNEGRLVGIVTVDD 246 (449)
T ss_pred ---------------------CCCCcHHHHhCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEcCCCeEEEEEEHHH
Confidence 1135789999988889999999999999999999999999998899999999876
No 55
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.55 E-value=1.3e-13 Score=99.98 Aligned_cols=108 Identities=34% Similarity=0.545 Sum_probs=90.2
Q ss_pred ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHh
Q 026495 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (237)
Q Consensus 94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (237)
++.++.+++++.++.+.|.+.+++.+||+|+ |+++|+++..|++......+. .
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~i~~~~l~~~~~~~~~--------------------------~ 54 (113)
T cd04622 2 DVVTVSPDDTIREAARLMREHDVGALPVCEN-DRLVGIVTDRDIVVRAVAEGR--------------------------D 54 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEhHHHHHHHhhccC--------------------------C
Confidence 5788999999999999999999999999997 999999999998732110000 0
Q ss_pred hcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495 174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK 228 (237)
Q Consensus 174 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d 228 (237)
....++.++|...+.++.+++++.++++.|.+.+.+.+||++++|+++|+|++.|
T Consensus 55 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~d 109 (113)
T cd04622 55 PDTTTVGDVMTRGVVTVTEDDDVDEAARLMREHQVRRLPVVDDDGRLVGIVSLGD 109 (113)
T ss_pred cccCCHHHhccCCccEECCCCCHHHHHHHHHHcCCCeeeEECCCCcEEEEEEHHH
Confidence 1123488899888999999999999999999999999999987799999999876
No 56
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.55 E-value=1.3e-13 Score=102.57 Aligned_cols=121 Identities=21% Similarity=0.245 Sum_probs=92.3
Q ss_pred ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHh
Q 026495 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (237)
Q Consensus 94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (237)
++..+.++.++.++++.|.+.+.+.+||+|++|+++|+++..|+..++........ ..........
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~~~~~~~~~~~--------------~~~~~~~~~~ 67 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIVDFVVRDRDKAR--------------TGDRSGEKER 67 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEECCCCcEEEEEEHHHHHHHHhhhhhhcc--------------hhhhhhhhhh
Confidence 57789999999999999999999999999988999999999999864321100000 0000000001
Q ss_pred hcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEc--CCCcEEEEEEccc
Q 026495 174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVD--ADGWNYHKRKCSK 228 (237)
Q Consensus 174 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd--~~~~~iGvIt~~d 228 (237)
....++.++|..+++++++++++.++++.|.+.+.+.+||++ ++|+++|+||++|
T Consensus 68 ~~~~~~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~d 124 (128)
T cd04632 68 MLDLPVYDAMSSPVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKD 124 (128)
T ss_pred hccCcHHHHhcCCCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHh
Confidence 123568889988889999999999999999999999999985 3589999999976
No 57
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.55 E-value=1.5e-13 Score=102.99 Aligned_cols=127 Identities=31% Similarity=0.427 Sum_probs=94.8
Q ss_pred ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHh
Q 026495 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (237)
Q Consensus 94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (237)
++.++.+++++.++++.|.+.+.+.+||+|++|+++|+++..++.++........... .+.... +.+ .+....
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~i~~~~l~~~~~~~~~~~~~~-~~~~~~-----~~~-~~~~~~ 74 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLIRKIYKGKGLFYVT-LLYSVI-----FLD-ESKIKK 74 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCCCccceECCCCCEEEEEeHHHHHHHHhccCCccccc-cccccc-----ccc-hHHHHH
Confidence 4678999999999999999989999999998899999999999987543211100000 000000 000 111122
Q ss_pred hcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495 174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK 228 (237)
Q Consensus 174 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d 228 (237)
....++.++|.++++.+.+++++.++++.|.+.+.+.+||+++ |+++|++|..|
T Consensus 75 ~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~iGvit~~d 128 (132)
T cd04636 75 LLGKKVEEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVDD-GKLVGIISRGD 128 (132)
T ss_pred HcCCCHHHhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEEC-CEEEEEEEHHH
Confidence 2234788899888999999999999999999999999999997 99999999876
No 58
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=99.55 E-value=1.1e-13 Score=100.09 Aligned_cols=106 Identities=30% Similarity=0.436 Sum_probs=90.3
Q ss_pred ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHh
Q 026495 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (237)
Q Consensus 94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (237)
++.+++.+.++.++.+.|.+.+.+.+||+|+ |+++|+++..++.+.....+ .
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~~~~~---------------------------~ 53 (111)
T cd04800 2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDD-GRLVGIVTDRDLRNRVVAEG---------------------------L 53 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHHHhccC---------------------------C
Confidence 5778999999999999999988999999997 99999999999986321110 0
Q ss_pred hcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495 174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK 228 (237)
Q Consensus 174 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d 228 (237)
....++.++|..+++.+.+++++.++++.|.+++.+.+||+++ |+++|+++++|
T Consensus 54 ~~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Giit~~d 107 (111)
T cd04800 54 DPDTPVSEVMTAPPITIPPDATVFEALLLMLERGIHHLPVVDD-GRLVGVISATD 107 (111)
T ss_pred CccCCHHHHhCCCCeEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHH
Confidence 1134688888888999999999999999999999999999986 99999999876
No 59
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.55 E-value=5.7e-14 Score=101.57 Aligned_cols=98 Identities=33% Similarity=0.379 Sum_probs=85.0
Q ss_pred EcCCCCHHHHHHHHHHCC-----CCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHH
Q 026495 98 VKPTTTVDEALEILVEKR-----ITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLS 172 (237)
Q Consensus 98 v~~~~~l~~~~~~~~~~~-----~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (237)
+.+++++.++++.|.+++ ...+||+|++|+++|+++.+++.+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~~l~~~-------------------------------- 49 (109)
T cd04606 2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDLLLA-------------------------------- 49 (109)
T ss_pred ccccCcHHHHHHHHHhccCcccceeEEEEECCCCCEEEEEEHHHHhcC--------------------------------
Confidence 567889999999998776 4689999988999999999999852
Q ss_pred hhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495 173 KTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK 228 (237)
Q Consensus 173 ~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d 228 (237)
..+.++.++|.++++.+.+++++.++++.|.+.+.+.+||++++|+++|+|+++|
T Consensus 50 -~~~~~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~d 104 (109)
T cd04606 50 -DPDTPVSDIMDTDVISVSADDDQEEVARLFEKYDLLALPVVDEEGRLVGIITVDD 104 (109)
T ss_pred -CCcchHHHHhCCCCeEEcCCCCHHHHHHHHHHcCCceeeeECCCCcEEEEEEhHH
Confidence 0134678888888899999999999999999999999999998899999999876
No 60
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=99.55 E-value=9.6e-14 Score=99.67 Aligned_cols=97 Identities=30% Similarity=0.281 Sum_probs=86.4
Q ss_pred eEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHhhc
Q 026495 96 HVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTN 175 (237)
Q Consensus 96 ~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (237)
.++++++++.++++.|.+.+...+||+|+ |+++|+++.+|+.+..
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~---------------------------------- 48 (104)
T cd04594 4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY-NKFLGAVYLKDIENAT---------------------------------- 48 (104)
T ss_pred eEECCCCCHHHHHHHHHHcCCcEEEEEEC-CEEEEEEEHHHHhhhc----------------------------------
Confidence 46789999999999999999999999997 9999999999998521
Q ss_pred CCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495 176 GKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK 228 (237)
Q Consensus 176 ~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d 228 (237)
..++.++|.+.+.++.+++++.++++.|.+++...+||++ +|+++|+||.+|
T Consensus 49 ~~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~-~~~~iGvit~~d 100 (104)
T cd04594 49 YGDVVDYIVRGIPYVRLTSTAEEAWEVMMKNKTRWCPVVD-DGKFKGIVTLDS 100 (104)
T ss_pred ccchhhhhhcCCcEEcCCCCHHHHHHHHHHcCcceEEEEE-CCEEEEEEEHHH
Confidence 1346778888889999999999999999999999999998 699999999876
No 61
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.55 E-value=6.8e-14 Score=105.21 Aligned_cols=125 Identities=33% Similarity=0.537 Sum_probs=94.5
Q ss_pred ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHH----
Q 026495 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQK---- 169 (237)
Q Consensus 94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 169 (237)
++.++.+++++.++.+.|.+++++.+||+|++|+++|+++..|+.+....... ... ..|........
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~~Gvi~~~dl~~~~~~~~~-~~~--------~~~~~~~~~~~~~~~ 73 (135)
T cd04586 3 DVVTVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLLRRAELGTE-RRR--------ARWLDLLAGAEELAA 73 (135)
T ss_pred CCEEeCCCCCHHHHHHHHHHcCCCCceEECCCCCEEEEeeHHHHHHHhcccCc-chh--------hhHHHHhcchHHHHH
Confidence 57889999999999999999999999999988999999999999864321100 000 00100000000
Q ss_pred HHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495 170 LLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK 228 (237)
Q Consensus 170 ~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d 228 (237)
........++.++|.++++.+.+++++.++++.|.+.+.+.+||+| +|+++|+||++|
T Consensus 74 ~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~g~~~Gvit~~d 131 (135)
T cd04586 74 AFVRSHGRKVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR-GGRLVGIVSRAD 131 (135)
T ss_pred HHHHhcCCCHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEec-CCEEEEEEEhHh
Confidence 0001223568899988899999999999999999999999999999 899999999976
No 62
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.55 E-value=6e-14 Score=125.97 Aligned_cols=154 Identities=21% Similarity=0.214 Sum_probs=120.4
Q ss_pred hhccCCEEEEecCccchhH-HH---hccCCCceEEecCCceeeeehhhhcccCCCCCcccccccccccCceeEEcCCCCH
Q 026495 29 FALQLPCLLLSRPGCRVFS-VL---ATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTV 104 (237)
Q Consensus 29 i~~~v~~li~~~~~~~v~~-~~---~~~~~~v~v~~~sp~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l 104 (237)
+..++|++-.. -..+++ +| .+...++-+++.+ ..... + ......+++.++|.+ +++++.+++++
T Consensus 40 ~~l~~P~vsa~--mdtvTe~~MAi~~A~~GGigvIh~n-~~i~~-----q--ae~v~~VKv~eim~~--~pvtv~p~~tI 107 (475)
T TIGR01303 40 TGTTIPLVVAN--MTAVAGRRMAETVARRGGIVILPQD-LPIPA-----V--KQTVAFVKSRDLVLD--TPITLAPHDTV 107 (475)
T ss_pred Cccccceeecc--chhhHHHHHHHHHHHCCCEEEEeCC-CCHHH-----H--HHHHhhcchhhcccc--CCeEECCCCCH
Confidence 34567766543 444543 44 3677788888743 12111 1 122345577788888 78999999999
Q ss_pred HHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHhhcCCccccccc
Q 026495 105 DEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMT 184 (237)
Q Consensus 105 ~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~ 184 (237)
.++++.|.+.+.+.+||+|+ ++++|+||.+|+... ....+++++|+
T Consensus 108 ~eA~~lm~~~~~~~~vVvD~-gklvGIVT~rDL~~~---------------------------------~~~~~V~dIMt 153 (475)
T TIGR01303 108 SDAMALIHKRAHGAAVVILE-DRPVGLVTDSDLLGV---------------------------------DRFTQVRDIMS 153 (475)
T ss_pred HHHHHHHHhcCCeEEEEEEC-CEEEEEEEHHHhhcC---------------------------------CCCCCHHHHcc
Confidence 99999999999999999884 799999999998642 01356999999
Q ss_pred cCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495 185 PAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK 228 (237)
Q Consensus 185 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d 228 (237)
++++++++++++.+|+++|.+++.+++||+|++|+++|+||++|
T Consensus 154 ~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~D 197 (475)
T TIGR01303 154 TDLVTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTG 197 (475)
T ss_pred CCceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHH
Confidence 99999999999999999999999999999998899999999987
No 63
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.55 E-value=1.3e-13 Score=100.57 Aligned_cols=107 Identities=22% Similarity=0.388 Sum_probs=87.5
Q ss_pred ceeEEcCCCCHHHHHHHHHHCC-CCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHH
Q 026495 94 ELHVVKPTTTVDEALEILVEKR-ITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLS 172 (237)
Q Consensus 94 ~~~~v~~~~~l~~~~~~~~~~~-~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (237)
++..++.+.++.++.+.|.+.+ ...+||+| +|+++|+++..|+++......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~~~~~~~--------------------------- 53 (115)
T cd04620 2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVE-KGRLLGIFTERDIVRLTAIGK--------------------------- 53 (115)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCCceEEEcC-CCcEEEEEeHHHHHHHHhcCC---------------------------
Confidence 4678899999999999998887 66777777 589999999999986421000
Q ss_pred hhcCCccccccccCceEEcCC--CCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495 173 KTNGKMVGDLMTPAPVVVRET--TNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK 228 (237)
Q Consensus 173 ~~~~~~v~~im~~~~~~v~~~--~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d 228 (237)
.....++.++|.++++++.++ +++.++++.|.+++...+||+|++|+++|+||++|
T Consensus 54 ~~~~~~i~~~~~~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~d 111 (115)
T cd04620 54 DLSDLPIGEVMTQPVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQGQLIGLVTAES 111 (115)
T ss_pred CccccCHHHhcCCCcEEEecccccCHHHHHHHHHHhCCceEEEEcCCCCEEEEEEhHH
Confidence 001256888898888889887 78999999999999999999998899999999876
No 64
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.54 E-value=4.4e-14 Score=127.67 Aligned_cols=115 Identities=23% Similarity=0.291 Sum_probs=97.0
Q ss_pred ccccccccc-CceeEEcCCCCHHHHHHHHHHCCCCeEEEEcC---CCcEEEEEehHhHhhhccccCCCCCCCCccccccc
Q 026495 84 TVGDFMTTK-EELHVVKPTTTVDEALEILVEKRITGFPVIDD---DWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDS 159 (237)
Q Consensus 84 ~v~~im~~~-~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~---~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~ 159 (237)
+|+++|... ...+++++++++.++++.|.+++++.+||+|+ +|+++|+||..|+....
T Consensus 95 kVk~~~~g~i~~~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~------------------ 156 (502)
T PRK07107 95 RVKNYKAGFVVSDSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISR------------------ 156 (502)
T ss_pred HHHHHhcCCcCCCCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhccc------------------
Confidence 456666421 13568999999999999999999999999996 58999999999997420
Q ss_pred chhhHHHHHHHHHhhcCCcccccccc--CceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEcccC
Q 026495 160 TWKTFNEVQKLLSKTNGKMVGDLMTP--APVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSKG 229 (237)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d~ 229 (237)
...+.+++++|++ +++++.+++++.+|+++|.++++..+||+|++|+++|+||++|=
T Consensus 157 -------------~~~~~~V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Di 215 (502)
T PRK07107 157 -------------MSLDTKVKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDY 215 (502)
T ss_pred -------------cCCCCCHHHHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHH
Confidence 1124679999986 67889999999999999999999999999988999999999874
No 65
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.54 E-value=1.5e-13 Score=99.29 Aligned_cols=106 Identities=34% Similarity=0.494 Sum_probs=90.2
Q ss_pred ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHh
Q 026495 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (237)
Q Consensus 94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (237)
++.++.++.++.++.+.|.+.+.+.+||+|+ |+++|+++..|+.+..... .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~~~~----------------------------~ 52 (111)
T cd04612 2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDD-GRLVGIVTLADIRRVPAEG----------------------------R 52 (111)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcceEeeC-CeEEEEEEHHHHHHHHhcC----------------------------c
Confidence 5778999999999999999988999999997 9999999999998642100 0
Q ss_pred hcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495 174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK 228 (237)
Q Consensus 174 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d 228 (237)
.....+.++|.++++++.+++++.++++.|.+.+.+.+||++++|+++|+||..|
T Consensus 53 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~d 107 (111)
T cd04612 53 EATVLVGDVMTRDPVTASPDETLRDALKRMAERDIGRLPVVDDSGRLVGIVSRSD 107 (111)
T ss_pred ccccCHHHhccCCCeEECCCCCHHHHHHHHHhCCCCeeeEEcCCCCEEEEEEHHH
Confidence 0012567788888999999999999999999999999999997799999999875
No 66
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=99.54 E-value=1.5e-13 Score=100.70 Aligned_cols=117 Identities=35% Similarity=0.478 Sum_probs=92.5
Q ss_pred ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHh
Q 026495 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (237)
Q Consensus 94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (237)
++.+++.+.++.++++.|.+.+...+||+|+ |+++|+++..++.+.......... .++ ....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~i~~~~l~~~~~~~~~~~~----------~~~-------~~~~ 63 (122)
T cd04585 2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR-GKLVGIVTDRDLKLASPSKATTLD----------IWE-------LYYL 63 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHhCCcceeeEecC-CeEEEEEeHHHHHHhhhccccccc----------chh-------hhhh
Confidence 4678999999999999999999999999997 999999999999875321110000 000 0000
Q ss_pred hcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495 174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK 228 (237)
Q Consensus 174 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d 228 (237)
....++.++|.+++.++++++++.++++.|.+.+.+.+||++++|+++|+||+.|
T Consensus 64 ~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~d 118 (122)
T cd04585 64 LSKIKVSDIMTRDPITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESD 118 (122)
T ss_pred hcccCHHHhccCCCeEeCCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHH
Confidence 1135678889888999999999999999999999999999997799999999875
No 67
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.54 E-value=1.8e-13 Score=99.17 Aligned_cols=107 Identities=25% Similarity=0.418 Sum_probs=88.1
Q ss_pred ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHh
Q 026495 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (237)
Q Consensus 94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (237)
+++++++++++.++.+.|.+++...++|.+ +|+++|+++.+|+++.....+ ..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~~~~~~~--------------------------~~ 54 (112)
T cd04625 2 TIYTVAPETLLSEAVATMAEQDLGSLVVME-RGELVGLLTFREVLQAMAQHG--------------------------AG 54 (112)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeEEEee-CCEEEEEEEHHHHHHHHHhcC--------------------------Cc
Confidence 577899999999999999888877777766 599999999999986421100 00
Q ss_pred hcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495 174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK 228 (237)
Q Consensus 174 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d 228 (237)
....++.++|..++.++.+++++.++++.|.+++...+||++ +|+++|+||++|
T Consensus 55 ~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~-~~~~~Gvvt~~d 108 (112)
T cd04625 55 VLDTTVRAIMNPEPIVASPDDSIDEVRRLMVERHLRYLPVLD-GGTLLGVISFHD 108 (112)
T ss_pred hhcCCHHHHhCCCCeEECCCCCHHHHHHHHHHcCCCeeeEEE-CCEEEEEEEHHH
Confidence 113568899988888999999999999999999999999998 699999999876
No 68
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.53 E-value=1e-13 Score=124.47 Aligned_cols=112 Identities=31% Similarity=0.484 Sum_probs=99.2
Q ss_pred cccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCC---CcEEEEEehHhHhhhccccCCCCCCCCcccccccc
Q 026495 84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD---WKLVGLVSDYDLLALDSISGSGRADNSMFPEVDST 160 (237)
Q Consensus 84 ~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~---~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~ 160 (237)
+.++.|.+ ++.++++++++.++++.|.+++++.+||+|++ ++++|+|+.+|++...
T Consensus 81 ~~~~~~~~--~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~~------------------- 139 (450)
T TIGR01302 81 RAENGIIS--DPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFVK------------------- 139 (450)
T ss_pred cccCceec--CceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhhh-------------------
Confidence 55667877 79999999999999999999999999999987 7999999999997421
Q ss_pred hhhHHHHHHHHHhhcCCccccccc-cCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEcccC
Q 026495 161 WKTFNEVQKLLSKTNGKMVGDLMT-PAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSKG 229 (237)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~v~~im~-~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d~ 229 (237)
....++.++|. .+++++++++++.++++.|.+++.+.+||+|++|+++|+||++|=
T Consensus 140 -------------~~~~~V~dvm~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DI 196 (450)
T TIGR01302 140 -------------DKGKPVSEVMTREEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDI 196 (450)
T ss_pred -------------cCCCCHHHhhCCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHh
Confidence 12457889998 488999999999999999999999999999999999999998763
No 69
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.53 E-value=2.6e-13 Score=98.32 Aligned_cols=107 Identities=29% Similarity=0.397 Sum_probs=89.4
Q ss_pred ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHh
Q 026495 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (237)
Q Consensus 94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (237)
++.++++++++.++.+.|.+.+.+.+||+|+ ++++|+++..|+++....... .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~~~~~~--------------------------~ 54 (112)
T cd04802 2 NVITVDPDTTVYEAANIMTENNIGRLIVVDN-EKPVGIITERDLVKKVVSRNL--------------------------K 54 (112)
T ss_pred CcEEECCCCCHHHHHHHHHHCCCCEEEEEEC-CEEEEEEEHHHHHHHHhhccC--------------------------C
Confidence 4678999999999999999999999999996 599999999999864211100 0
Q ss_pred hcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495 174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK 228 (237)
Q Consensus 174 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d 228 (237)
....++.++|.++++.+.+++++.++++.|.+++.+.+||+++ ++++|+|+++|
T Consensus 55 ~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvi~~~d 108 (112)
T cd04802 55 PREVPVGEVMSTPLITIDPNASLNEAAKLMAKHGIKRLPVVDD-DELVGIVTTTD 108 (112)
T ss_pred cccCCHHHhcCCCcEEECCCCCHHHHHHHHHHcCCCeeEEeeC-CEEEEEEEhhh
Confidence 1235688889888899999999999999999999999999985 49999999876
No 70
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.52 E-value=2.1e-13 Score=123.57 Aligned_cols=111 Identities=33% Similarity=0.446 Sum_probs=99.5
Q ss_pred cccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhh
Q 026495 84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKT 163 (237)
Q Consensus 84 ~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (237)
.++++|.+ ++.++++++++.++++.|.+++++.+||+|++++++|+|+.+|+....
T Consensus 88 ~~~dim~~--~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~~~~---------------------- 143 (486)
T PRK05567 88 RSESGVVT--DPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVRFET---------------------- 143 (486)
T ss_pred hhhhcccC--CCeEeCCCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhhhcc----------------------
Confidence 46778888 899999999999999999999999999999889999999999997421
Q ss_pred HHHHHHHHHhhcCCccccccc-cCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495 164 FNEVQKLLSKTNGKMVGDLMT-PAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK 228 (237)
Q Consensus 164 ~~~~~~~~~~~~~~~v~~im~-~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d 228 (237)
....++.++|. ++++++++++++.++++.|.+++.+.+||+|++|+++|+||++|
T Consensus 144 ----------~~~~~V~dim~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~D 199 (486)
T PRK05567 144 ----------DLSQPVSEVMTKERLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKD 199 (486)
T ss_pred ----------cCCCcHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHH
Confidence 12357888997 67889999999999999999999999999999999999999887
No 71
>PRK11573 hypothetical protein; Provisional
Probab=99.52 E-value=1.2e-13 Score=122.58 Aligned_cols=131 Identities=14% Similarity=0.023 Sum_probs=107.8
Q ss_pred eehhhhcccCCCCCcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCC-CcEEEEEehHhHhhhccccCC
Q 026495 68 SGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGS 146 (237)
Q Consensus 68 ~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~-~~~~Givt~~dl~~~~~~~~~ 146 (237)
+..++.. ...+.+.+|+++|+|+.++..++.+++++++.+.+.+++++++||++++ +.++|+++.+|++.......
T Consensus 174 e~~mi~~--vl~l~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~~~- 250 (413)
T PRK11573 174 NQDMLLS--VLDLEKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKK- 250 (413)
T ss_pred HHHHHHH--HhccCCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhccC-
Confidence 4444444 5678899999999999999999999999999999999999999999765 78999999999986321000
Q ss_pred CCCCCCcccccccchhhHHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEc
Q 026495 147 GRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKC 226 (237)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~ 226 (237)
......+.+++ +++.+|++++++.++++.|++++.+...|+|++|...|+||.
T Consensus 251 --------------------------~~~~~~l~~~~-r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG~~~GiVTl 303 (413)
T PRK11573 251 --------------------------EFTKENMLRAA-DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTV 303 (413)
T ss_pred --------------------------cCCHHHHHhhc-cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEecCCCeEEEeeH
Confidence 00012234555 467899999999999999999999999999999999999998
Q ss_pred cc
Q 026495 227 SK 228 (237)
Q Consensus 227 ~d 228 (237)
.|
T Consensus 304 eD 305 (413)
T PRK11573 304 ED 305 (413)
T ss_pred HH
Confidence 87
No 72
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.51 E-value=3.9e-13 Score=121.60 Aligned_cols=112 Identities=28% Similarity=0.346 Sum_probs=98.1
Q ss_pred cccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCC---CcEEEEEehHhHhhhccccCCCCCCCCcccccccc
Q 026495 84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD---WKLVGLVSDYDLLALDSISGSGRADNSMFPEVDST 160 (237)
Q Consensus 84 ~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~---~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~ 160 (237)
..++.|.. ++.++++++++.++.++|.+.+++.+||+|++ ++++|+|+.+|+...
T Consensus 97 ~~e~g~i~--dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~-------------------- 154 (495)
T PTZ00314 97 RFENGFIM--DPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFV-------------------- 154 (495)
T ss_pred cccccccc--CCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhc--------------------
Confidence 34556777 78999999999999999999999999999873 799999999999732
Q ss_pred hhhHHHHHHHHHhhcCCcccccccc--CceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEcccC
Q 026495 161 WKTFNEVQKLLSKTNGKMVGDLMTP--APVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSKG 229 (237)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d~ 229 (237)
.....++.++|++ ++.++++++++.+++++|.+++.+.+||+|++++++|+||++|=
T Consensus 155 ------------~~~~~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DI 213 (495)
T PTZ00314 155 ------------KDKSTPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDL 213 (495)
T ss_pred ------------ccCCCCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHh
Confidence 1124679999987 78899999999999999999999999999988999999999874
No 73
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.50 E-value=3.3e-13 Score=99.34 Aligned_cols=117 Identities=28% Similarity=0.377 Sum_probs=91.7
Q ss_pred ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHh
Q 026495 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (237)
Q Consensus 94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (237)
++.++++++++.++.+.|.+.+++.+||+|+ |+++|+++..++.+..... .. ..++...+. .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~~~-~~-----------~~~~~~~~~-----~ 63 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED-NELVGVISDRDYLKAISPF-LG-----------TAGETEKDL-----A 63 (122)
T ss_pred CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC-CeEEEEEEHHHHHHHHHHH-hc-----------cccchHHHH-----H
Confidence 4778999999999999999999999999996 9999999999998642210 00 000000000 0
Q ss_pred hcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495 174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK 228 (237)
Q Consensus 174 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d 228 (237)
....++.++|..+++.+.+++++.++++.|.+++...+||++++|+++|++++.|
T Consensus 64 ~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~d 118 (122)
T cd04637 64 TLNRRAHQIMTRDPITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKD 118 (122)
T ss_pred HHHhHHHHhhcCCCeeeCCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHH
Confidence 1124678888888999999999999999999999999999997799999999876
No 74
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.50 E-value=2.4e-13 Score=123.11 Aligned_cols=106 Identities=22% Similarity=0.309 Sum_probs=94.5
Q ss_pred ccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcC---CCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHH
Q 026495 89 MTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD---DWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFN 165 (237)
Q Consensus 89 m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~---~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (237)
|.+ +++++++++++.++.+.|.+++++.+||+|+ +|+++|+||.+|+....
T Consensus 106 mi~--dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~------------------------ 159 (505)
T PLN02274 106 FVS--DPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVN------------------------ 159 (505)
T ss_pred ccC--CCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhcc------------------------
Confidence 666 7999999999999999999999999999987 48999999999997421
Q ss_pred HHHHHHHhhcCCccccccccC--ceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495 166 EVQKLLSKTNGKMVGDLMTPA--PVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK 228 (237)
Q Consensus 166 ~~~~~~~~~~~~~v~~im~~~--~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d 228 (237)
..+.++.++|+++ ++++++++++.+|+++|.+++.+.+||+|++++++|+||++|
T Consensus 160 --------~~~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~D 216 (505)
T PLN02274 160 --------DRETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTD 216 (505)
T ss_pred --------ccCCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHH
Confidence 1246799999876 779999999999999999999999999998899999999877
No 75
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=99.49 E-value=5.1e-13 Score=98.03 Aligned_cols=116 Identities=30% Similarity=0.402 Sum_probs=91.7
Q ss_pred ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHh
Q 026495 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (237)
Q Consensus 94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (237)
++.+++.++++.++...|.+.+++.+||+|++|+++|+++..++.+.......... .... ..
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~-----------------~~~~-~~ 63 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLRDASPSPFTTLS-----------------EHEL-YL 63 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEECCCCcEEEEEEHHHHHHHhhhhcccch-----------------hhhh-hh
Confidence 47789999999999999999999999999988999999999999864211000000 0000 01
Q ss_pred hcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495 174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK 228 (237)
Q Consensus 174 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d 228 (237)
....++.++|.+++.++.+++++.++++.|.+++...+||+++ |+++|+++.+|
T Consensus 64 ~~~~~v~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~~Gvv~~~d 117 (121)
T cd04584 64 LLKMPVKEIMTKDVITVHPLDTVEEAALLMREHRIGCLPVVED-GRLVGIITETD 117 (121)
T ss_pred hcCcCHHHHhhCCCeEECCCCcHHHHHHHHHHcCCCeEEEeeC-CEEEEEEEHHH
Confidence 1235688889888999999999999999999999999999985 99999999875
No 76
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.49 E-value=6.7e-13 Score=95.35 Aligned_cols=101 Identities=33% Similarity=0.500 Sum_probs=87.6
Q ss_pred ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHh
Q 026495 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (237)
Q Consensus 94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (237)
++.++..+.++.+++..|.+.+++.+||++++++++|+++.+++....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~v~~~~l~~~~-------------------------------- 49 (106)
T cd04638 2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKSGELVGIITRKDLLRNP-------------------------------- 49 (106)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEHHHHHhcc--------------------------------
Confidence 467889999999999999998899999999889999999999997420
Q ss_pred hcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495 174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK 228 (237)
Q Consensus 174 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d 228 (237)
...++.++|..++.++.+++++.++++.|.+++.+.+||++ +|+++|+|+..|
T Consensus 50 -~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd-~~~~~G~it~~d 102 (106)
T cd04638 50 -EEEQLALLMTRDPPTVSPDDDVKEAAKLMVENNIRRVPVVD-DGKLVGIVTVAD 102 (106)
T ss_pred -ccchHHHHhcCCCceECCCCCHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHH
Confidence 12346677878888999999999999999999999999998 589999999875
No 77
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=99.49 E-value=2.7e-13 Score=124.81 Aligned_cols=172 Identities=24% Similarity=0.252 Sum_probs=120.0
Q ss_pred CCCceEEecCCceeeeehhhhcc--cCCCCC--cccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcE
Q 026495 53 SDRVSALRRSSAVFASGTLTANS--AAPSSG--VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKL 128 (237)
Q Consensus 53 ~~~v~v~~~sp~~~~~~~~~~~~--~~~~~~--~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~ 128 (237)
..+++.+.++|.+..++.+.... .+.... ..+++++|.+ ++.++++++++.+|++.|.+++++.+||+|++|++
T Consensus 34 ~~~v~~r~~~~~~~~e~vl~~~~~~~p~ll~~~~~~V~dim~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l 111 (546)
T PRK14869 34 GNYIPARLGELNPETKFVLDYFGVEAPELIEDVKPQVRDLEID--KPVTVSPDTSLKEAWNLMDENNVKTLPVVDEEGKL 111 (546)
T ss_pred CcEEEeeCCCCCHHHHHHHHHhCCCchhhhhccCCcHHHhcCC--CCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEE
Confidence 33566677777663333222211 111111 3689999998 89999999999999999999999999999988999
Q ss_pred EEEEehHhHhhhccccCCC----C---------------------CCC----Cc--------------cc----ccccc-
Q 026495 129 VGLVSDYDLLALDSISGSG----R---------------------ADN----SM--------------FP----EVDST- 160 (237)
Q Consensus 129 ~Givt~~dl~~~~~~~~~~----~---------------------~~~----~~--------------~~----~~~~~- 160 (237)
+|+|+..|+.+........ . ... .+ .. -.++.
T Consensus 112 ~Givt~~di~~~~~~~~~~~~~~~~~~t~~~i~~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr~ 191 (546)
T PRK14869 112 LGLVSLSDLARAYMDILDPEILSKSPTSLENIIRTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDRE 191 (546)
T ss_pred EEEEEHHHHHHHHHhhcchhhhhhcCCCHHHHHHhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCcH
Confidence 9999999998754321100 0 000 00 00 00011
Q ss_pred -----------------------------------------hhhHHHHHHHHHhhcCCccccccc-cCceEEcCCCCHHH
Q 026495 161 -----------------------------------------WKTFNEVQKLLSKTNGKMVGDLMT-PAPVVVRETTNLED 198 (237)
Q Consensus 161 -----------------------------------------~~~~~~~~~~~~~~~~~~v~~im~-~~~~~v~~~~~l~~ 198 (237)
+.+++....+ ....+++++|+ +++.++++++++.+
T Consensus 192 d~~~~ai~~~~~~lIlt~g~~~~~~v~~la~~~~i~ii~t~~dt~~t~~~l---~~~~~V~~iM~~~~~~~~~~~~~~~~ 268 (546)
T PRK14869 192 DIQLAAIEAGVRLLIITGGAPVSEDVLELAKENGVTVISTPYDTFTTARLI---NQSIPVSYIMTTEDLVTFSKDDYLED 268 (546)
T ss_pred HHHHHHHHcCCCEEEECCCCCCCHHHHHHHHhCCCeEEEecccHHHHHHHh---hcCCCHHHhccCCCcEEECCCCcHHH
Confidence 1112222211 23568999999 88999999999999
Q ss_pred HHHHHHHcCCcEEEEEcCCCcEEEEEEcccC
Q 026495 199 AARLLLETKYRRLPVVDADGWNYHKRKCSKG 229 (237)
Q Consensus 199 a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d~ 229 (237)
+.+.|.+++++.+||+|++|+++|+||++|-
T Consensus 269 ~~~~m~~~~~~~~PVvd~~g~lvGiit~~dl 299 (546)
T PRK14869 269 VKEVMLKSRYRSYPVVDEDGKVVGVISRYHL 299 (546)
T ss_pred HHHHHHhcCCCceEEEcCCCCEEEEEEHHHh
Confidence 9999999999999999988999999998764
No 78
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.48 E-value=4.5e-13 Score=98.43 Aligned_cols=116 Identities=26% Similarity=0.347 Sum_probs=91.3
Q ss_pred ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHh
Q 026495 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (237)
Q Consensus 94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (237)
++.++.+++++.++.+.|.+.+.+.+||+|+ |+++|+++..++.+........ |.. . .....
T Consensus 2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~~~~~~~-------------~~~-~---~~~~~ 63 (121)
T cd04633 2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG-GKLVGIVTEKDIADALRSFRPL-------------VRD-R---HQERR 63 (121)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC-CEEEEEEchHHHHHhhhhhhhc-------------ccc-h---hhhhh
Confidence 4678999999999999999999999999996 9999999999998643211000 000 0 00001
Q ss_pred hcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495 174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK 228 (237)
Q Consensus 174 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d 228 (237)
....++.++|..++..+.+++++.++++.|.+.+.+.+||+++ |+++|+|+.+|
T Consensus 64 ~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvi~~~d 117 (121)
T cd04633 64 IRNLPVSDIMTRPVITIEPDTSVSDVASLMLENNIGGLPVVDD-GKLVGIVTRTD 117 (121)
T ss_pred hhccCHHHHccCCceEECCCCcHHHHHHHHHHcCCCcccEEEC-CEEEEEEEHHH
Confidence 1234677888888999999999999999999999999999996 99999999876
No 79
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=99.48 E-value=1.2e-12 Score=93.79 Aligned_cols=108 Identities=44% Similarity=0.602 Sum_probs=90.2
Q ss_pred ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHh
Q 026495 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (237)
Q Consensus 94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (237)
++.+++.+.++.++.+.|.+.+...+||++++++++|+++.+|+.+...... .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~---------------------------~ 54 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAEGG---------------------------L 54 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECCCCCEEEEEeHHHHHHHHHhcc---------------------------C
Confidence 4678899999999999999988999999998899999999999986421100 0
Q ss_pred hcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495 174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK 228 (237)
Q Consensus 174 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d 228 (237)
.....+.++|..++..+.+++++.++++.|.+.+.+.+||++++|+++|+++.+|
T Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~d 109 (113)
T cd02205 55 DPLVTVGDVMTRDVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGRLVGIVTRSD 109 (113)
T ss_pred CccccHHHHhcCCceecCCCcCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHH
Confidence 0011256778888889999999999999999999999999998899999999875
No 80
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.48 E-value=1.7e-13 Score=121.46 Aligned_cols=119 Identities=23% Similarity=0.348 Sum_probs=105.3
Q ss_pred CCcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCccccccc
Q 026495 80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDS 159 (237)
Q Consensus 80 ~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~ 159 (237)
+-..++++++.. +.+++++..++.+|...|.+.+.+.+.++++++...||||.+|+.......+
T Consensus 146 ~~~trv~~~~~~--~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~~~~~GIvT~~dl~~~v~~~g-------------- 209 (610)
T COG2905 146 FILTRVGEVKTL--PAVTVSPQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIADG-------------- 209 (610)
T ss_pred HHHHHHHHHhcC--CCcccCccCcHHHHHHHHHhcCCCeEEEEcCCCCccceeehHHHHHHHHhcC--------------
Confidence 445678888888 7999999999999999999999999999998999999999999997533222
Q ss_pred chhhHHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495 160 TWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK 228 (237)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d 228 (237)
.....+|+++|+.++.+|+..+.+.+|+-.|..++++++||++ +|+++|+||.+|
T Consensus 210 -------------~~~~~~V~evmT~p~~svd~~~~~feAml~m~r~~I~hl~V~e-~gq~~Gilt~~d 264 (610)
T COG2905 210 -------------RSKTQKVSEVMTSPVISVDRGDFLFEAMLMMLRNRIKHLPVTE-DGQPLGILTLTD 264 (610)
T ss_pred -------------CCcccchhhhhccCceeecCcchHHHHHHHHHHhCCceeeeec-CCeeeEEeeHHH
Confidence 2335789999999999999999999999999999999999997 799999999876
No 81
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=99.47 E-value=9.3e-13 Score=94.98 Aligned_cols=96 Identities=26% Similarity=0.370 Sum_probs=85.4
Q ss_pred ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcC---CCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHH
Q 026495 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDD---DWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKL 170 (237)
Q Consensus 94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~---~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (237)
....+.+++++.++.+.+.+.+...+||+|+ +|+++|+|+.+|+.+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~----------------------------- 53 (105)
T cd04591 3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVAL----------------------------- 53 (105)
T ss_pred ceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHH-----------------------------
Confidence 5678899999999999999998889999997 68999999999998531
Q ss_pred HHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495 171 LSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK 228 (237)
Q Consensus 171 ~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d 228 (237)
. . +|.+++.++++++++.++++.|.+++.+.+||++ +|+++|+|+++|
T Consensus 54 -~---~-----~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~-~~~~~Gvvt~~d 101 (105)
T cd04591 54 -K---N-----YIDPSPFTVSPRTSLEKVHQLFRKLGLRHLLVVD-EGRLVGIITRKD 101 (105)
T ss_pred -H---H-----hccCCCceECCCCcHHHHHHHHHHcCCCEEEEEE-CCeEEEEEEhhh
Confidence 0 1 7878888999999999999999999999999996 789999999976
No 82
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.47 E-value=8e-13 Score=95.17 Aligned_cols=105 Identities=25% Similarity=0.265 Sum_probs=86.4
Q ss_pred ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHh
Q 026495 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (237)
Q Consensus 94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (237)
++.+++.++++.++.+.|.+.+.+.+||+|+ |+++|+++..|+.+...... .
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~~~~---------------------------~ 53 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD-GRVVGSIDESDLLDALIEGK---------------------------A 53 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEeeC-CeeEEEEeHHHHHHHHhccc---------------------------c
Confidence 4678899999999999999999999999997 99999999999987421100 0
Q ss_pred hcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495 174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK 228 (237)
Q Consensus 174 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d 228 (237)
....++.++|.+++..+++++++.+++++|.+ .. .+||++++|+++|+||++|
T Consensus 54 ~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~-~~-~~~vv~~~~~~~Gvvt~~d 106 (110)
T cd04609 54 KFSLPVREVMGEPLPTVDPDAPIEELSELLDR-GN-VAVVVDEGGKFVGIITRAD 106 (110)
T ss_pred ccCcCHHHHhcCCCceeCCCCcHHHHHHHHHh-CC-ceeEEecCCeEEEEEeHHH
Confidence 01246778888888899999999999999988 43 4788887899999999876
No 83
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=99.47 E-value=6.2e-13 Score=118.87 Aligned_cols=129 Identities=25% Similarity=0.244 Sum_probs=107.0
Q ss_pred eehhhhcccCCCCCcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEc-CCCcEEEEEehHhHhhhccccCC
Q 026495 68 SGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVID-DDWKLVGLVSDYDLLALDSISGS 146 (237)
Q Consensus 68 ~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd-~~~~~~Givt~~dl~~~~~~~~~ 146 (237)
+..++.. ...+.+.+|+++|+|+.++..++.+.+++++.+.+.+++++++||++ +.+.++|+++.+|++......
T Consensus 193 E~~mi~~--v~~l~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~-- 268 (429)
T COG1253 193 EREMINN--VLDLDDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDG-- 268 (429)
T ss_pred HHHHHHH--HhccCCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcC--
Confidence 4444444 56788999999999999999999999999999999999999999999 448899999999999742111
Q ss_pred CCCCCCcccccccchhhHHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEc
Q 026495 147 GRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKC 226 (237)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~ 226 (237)
.........+ .+++.|++++++.++++.|++.+.+...|+|++|.+.|+||.
T Consensus 269 ---------------------------~~~~~~~~~~-~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEyG~~~GlVTl 320 (429)
T COG1253 269 ---------------------------QSDLDLRVLV-RPPLFVPETLSLSDLLEEFREERTHMAIVVDEYGGVEGLVTL 320 (429)
T ss_pred ---------------------------ccccchhhcc-cCCeEecCCCcHHHHHHHHHHhCCeEEEEEEcCCCeEEEeEH
Confidence 0001122222 378899999999999999999999999999999999999998
Q ss_pred cc
Q 026495 227 SK 228 (237)
Q Consensus 227 ~d 228 (237)
.|
T Consensus 321 eD 322 (429)
T COG1253 321 ED 322 (429)
T ss_pred HH
Confidence 87
No 84
>COG0517 FOG: CBS domain [General function prediction only]
Probab=99.45 E-value=2.9e-12 Score=93.34 Aligned_cols=109 Identities=39% Similarity=0.531 Sum_probs=93.4
Q ss_pred cccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHH
Q 026495 88 FMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEV 167 (237)
Q Consensus 88 im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (237)
+|.+ .++++.++.++.++...|.+++...+||++. ++++|++|.+|+.+.....
T Consensus 4 ~~~~--~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~-~~l~Giit~~di~~~~~~~----------------------- 57 (117)
T COG0517 4 IMTK--DVITVKPDTSVRDALLLMSENGVSAVPVVDD-GKLVGIITERDILRALAAG----------------------- 57 (117)
T ss_pred cccC--CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEHHHHHHHHhcc-----------------------
Confidence 4445 7899999999999999999999999999984 4899999999999753211
Q ss_pred HHHHHhhcCC-ccccccccCceEEcCCCCHHHHHHHHHH-cCCcEEEEEcCCC-cEEEEEEccc
Q 026495 168 QKLLSKTNGK-MVGDLMTPAPVVVRETTNLEDAARLLLE-TKYRRLPVVDADG-WNYHKRKCSK 228 (237)
Q Consensus 168 ~~~~~~~~~~-~v~~im~~~~~~v~~~~~l~~a~~~m~~-~~~~~lpVvd~~~-~~iGvIt~~d 228 (237)
.... ++.++|..++.++.++.++.++++.|.+ .+++.+||+++++ +++|++|++|
T Consensus 58 ------~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~d 115 (117)
T COG0517 58 ------GKRLLPVKEVMTKPVVTVDPDTPLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSD 115 (117)
T ss_pred ------CCccccHHHhccCCcEEECCCCCHHHHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHH
Confidence 1112 5888998888999999999999999999 6999999999775 9999999876
No 85
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.44 E-value=1.5e-12 Score=95.37 Aligned_cols=110 Identities=26% Similarity=0.358 Sum_probs=88.0
Q ss_pred ceeEEcCCCCHHHHHHHHHHCC-CCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHH
Q 026495 94 ELHVVKPTTTVDEALEILVEKR-ITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLS 172 (237)
Q Consensus 94 ~~~~v~~~~~l~~~~~~~~~~~-~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (237)
+++++++++++.++.+.|...+ ++.+||+|+ |+++|+++..|+.++..... .. .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~~l~~~~~~~~----------------------~~--~ 56 (119)
T cd04598 2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD-GRPVGLIMREALMELLSTPY----------------------GR--A 56 (119)
T ss_pred CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC-CeeEEEEEHHHHHHHHhchh----------------------hH--H
Confidence 4678899999999999998876 889999998 99999999999986421000 00 0
Q ss_pred hhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCc---EEEEEcCCCcEEEEEEccc
Q 026495 173 KTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYR---RLPVVDADGWNYHKRKCSK 228 (237)
Q Consensus 173 ~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~---~lpVvd~~~~~iGvIt~~d 228 (237)
.....++.++|.++++.+.+++++.++++.|.+++.. ..+|++++|+++|+|+..|
T Consensus 57 ~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~d 115 (119)
T cd04598 57 LYGKKPVSEVMDPDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKD 115 (119)
T ss_pred HHcCCcHHHhcCCCcEEecCCCCHHHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHH
Confidence 0124568899988899999999999999999988753 3468887899999999875
No 86
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.44 E-value=2.1e-12 Score=98.26 Aligned_cols=133 Identities=28% Similarity=0.400 Sum_probs=94.9
Q ss_pred ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccC--CCCCCCCcccccccchhh---HHHHH
Q 026495 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG--SGRADNSMFPEVDSTWKT---FNEVQ 168 (237)
Q Consensus 94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~--~~~~~~~~~~~~~~~~~~---~~~~~ 168 (237)
+++++++++++.++.+.|.+.+++.+||+|+ |+++|+++..|+.+++.... .....++..........+ ..++.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (143)
T cd04634 2 NPITCNADDTISDAARLLRENKISGAPVLDG-GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFINWEETK 80 (143)
T ss_pred CcEEecCCCCHHHHHHHHHHcCCCcceEeEC-CeEEEEecHHHHHHHHHhccCccccccCCcceeeeccchheeehHHHH
Confidence 5778999999999999999999999999997 99999999999987543221 000000100000000000 00111
Q ss_pred HHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495 169 KLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK 228 (237)
Q Consensus 169 ~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d 228 (237)
.........++.++|..+++++.+++++.++++.|.+.+...+||+++ |+++|+++.+|
T Consensus 81 ~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-~~~~Gvvt~~d 139 (143)
T cd04634 81 RALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVED-GRLVGIVTRGD 139 (143)
T ss_pred HHHHHHhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHH
Confidence 111112345788899888999999999999999999999999999986 99999999876
No 87
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=99.43 E-value=1.1e-12 Score=118.20 Aligned_cols=117 Identities=24% Similarity=0.268 Sum_probs=96.8
Q ss_pred CCcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCccccccc
Q 026495 80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDS 159 (237)
Q Consensus 80 ~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~ 159 (237)
+..++++++|.+ ++.++.+++++.++++.|.+++++.+||+|++|+++|+|+.+|+++......
T Consensus 332 l~~~~v~~im~~--~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~-------------- 395 (454)
T TIGR01137 332 LKNATVKDLHLP--APVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSALFAGK-------------- 395 (454)
T ss_pred hccCCHHHhCcC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhccC--------------
Confidence 567889999988 7999999999999999999999999999998899999999999986421100
Q ss_pred chhhHHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495 160 TWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK 228 (237)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d 228 (237)
.....++.++|.+++.++++++++.++++.|.+++ . +||+++|+++|+||++|
T Consensus 396 -------------~~~~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~--~-~vV~~~g~liGvvt~~d 448 (454)
T TIGR01137 396 -------------ANPDDAVSKVMSKKFIQIGEGEKLSDLSKFLEKNS--S-AIVTEEGKPIGVVTKID 448 (454)
T ss_pred -------------CCcCCCHHHhcCCCCeEECCcCcHHHHHHHHHHCC--e-eEEEECCEEEEEEEHHH
Confidence 01234688999888889999999999999998864 3 44444799999999876
No 88
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=99.41 E-value=2.8e-14 Score=120.88 Aligned_cols=191 Identities=19% Similarity=0.122 Sum_probs=139.7
Q ss_pred CeeeecceeccccccCCCCCCCcchhhhhccCCEEEEecC---------ccchhHHHhccCCCceEEecCCceeeeehhh
Q 026495 2 DSIVLPHSISVARLRAPPAGRTSGRTSFALQLPCLLLSRP---------GCRVFSVLATSSDRVSALRRSSAVFASGTLT 72 (237)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~~v~~li~~~~---------~~~v~~~~~~~~~~v~v~~~sp~~~~~~~~~ 72 (237)
|++++|++.++..+-+.+.|+.|...++.+++--+.--.+ ..++...+....+..++.+ .+..++
T Consensus 118 erva~~~s~~l~~l~~l~~Plv~lln~it~~llrl~gi~~~~~~~~~~s~EElR~~v~~~~~e~~~~~------~~rdmL 191 (423)
T COG4536 118 ERVALPSSFILAILVRLFGPLVWLLNAITRRLLRLLGINLDQAVSQLSSKEELRTAVNESGSEGSVNK------IDRDML 191 (423)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcccccccccCHHHHHHHHHHhhccccccc------ccHHHH
Confidence 6789999999999999999999988887665533321111 1111122222233333322 011111
Q ss_pred hcccCCCCCcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCC-CcEEEEEehHhHhhhccccCCCCCCC
Q 026495 73 ANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADN 151 (237)
Q Consensus 73 ~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~ 151 (237)
.. ...+++++|.|+|.||.++..++.+++.+++.+.+....+.++|+..++ +.++|+++.+|+++++...+.
T Consensus 192 ~g--vLDLe~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~----- 264 (423)
T COG4536 192 LG--VLDLENLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNE----- 264 (423)
T ss_pred hc--ccccccceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccCc-----
Confidence 11 4677899999999999999999999999999999999999999999765 679999999999986432210
Q ss_pred CcccccccchhhHHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495 152 SMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK 228 (237)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d 228 (237)
.....+..+. ..|++|++.+++.+-+..|.+++-+...|||++|.+.|+||..|
T Consensus 265 ----------------------~~k~d~~~~a-~epyFVPe~Tpl~~QL~~F~~~k~hialVVDEYG~i~GLVTLED 318 (423)
T COG4536 265 ----------------------FTKEDILRAA-DEPYFVPEGTPLSDQLVAFQRNKKHIALVVDEYGDIQGLVTLED 318 (423)
T ss_pred ----------------------ccHhHHHHHh-cCCeecCCCCcHHHHHHHHHHhcceEEEEEeccCcEEeeeeHHH
Confidence 0011222222 45789999999999999999999999999999999999999887
No 89
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=99.33 E-value=1.9e-11 Score=92.19 Aligned_cols=108 Identities=24% Similarity=0.281 Sum_probs=79.5
Q ss_pred ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHh
Q 026495 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (237)
Q Consensus 94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (237)
++.++.+++++.++++.|.+.+...+||+|++|+++|+||.+|++++.......... .. ..+..
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~~~~~~~~~--~~--------------~~~~~ 65 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLFTNKTTRVQ--PE--------------DETKQ 65 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHhhccccccc--cc--------------hhhcc
Confidence 578899999999999999999999999999889999999999999754321110000 00 00000
Q ss_pred hcCCccccc---------cccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCC
Q 026495 174 TNGKMVGDL---------MTPAPVVVRETTNLEDAARLLLETKYRRLPVVDAD 217 (237)
Q Consensus 174 ~~~~~v~~i---------m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 217 (237)
.....+.++ |..+++++.+++++.+|++.|.+++++.+||++++
T Consensus 66 ~~~~~v~~i~~~~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~ 118 (133)
T cd04592 66 TNTCLVSSVCTKGISYGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRG 118 (133)
T ss_pred cccccHHHHhhhhhhhcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCC
Confidence 001122333 45678899999999999999999999999999864
No 90
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=99.33 E-value=5.8e-12 Score=111.88 Aligned_cols=114 Identities=33% Similarity=0.371 Sum_probs=101.7
Q ss_pred CCcccccccccccCceeEEcCCCCHHHHHHHHHHC-----CCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcc
Q 026495 80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEK-----RITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMF 154 (237)
Q Consensus 80 ~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~-----~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~ 154 (237)
...-+++.+|+. +++.++++.|+.+++..+++. ....++|+|+++++.|+++.++++..
T Consensus 129 y~e~taG~~Mt~--e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~~~L~Gvvsl~~Ll~a-------------- 192 (451)
T COG2239 129 YPEDTAGRIMTT--EFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKGKLLGVVSLRDLLTA-------------- 192 (451)
T ss_pred CChhhhhcccee--eeEEeccCcCHHHHHHHHHHhcccccccceEEEECCccceEEEeeHHHHhcC--------------
Confidence 345588999999 999999999999999999853 45789999999999999999999842
Q ss_pred cccccchhhHHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495 155 PEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK 228 (237)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d 228 (237)
.+..+++++|.+.+..+.+++..+++.+++.+++.-.+||||++++++|+||..|
T Consensus 193 -------------------~~~~~i~~im~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~~LiG~itiDD 247 (451)
T COG2239 193 -------------------EPDELLKDLMEDDVVSVLADDDQEEVARLFEKYDLLAVPVVDEDNRLIGIITIDD 247 (451)
T ss_pred -------------------CcHhHHHHHhcccceeecccCCHHHHHHHHHHhCCeecceECCCCceeeeeeHHH
Confidence 2357899999999999999999999999999999999999999999999999765
No 91
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=99.19 E-value=1.3e-11 Score=113.79 Aligned_cols=182 Identities=17% Similarity=0.253 Sum_probs=126.9
Q ss_pred hhhhhccCCEEEEecCccchhHHH--hccCCCceEEecCCce-eeeehhhhcccCCCCCccccccccc-ccCceeEEcCC
Q 026495 26 RTSFALQLPCLLLSRPGCRVFSVL--ATSSDRVSALRRSSAV-FASGTLTANSAAPSSGVYTVGDFMT-TKEELHVVKPT 101 (237)
Q Consensus 26 ~~ai~~~v~~li~~~~~~~v~~~~--~~~~~~v~v~~~sp~~-~~~~~~~~~~~~~~~~~~~v~~im~-~~~~~~~v~~~ 101 (237)
..|++.+++++++++ +..+.+.+ .+...+++++. +|.+ +...+.+.. ..+|+++|+ + ++++++++
T Consensus 195 ~~ai~~~~~~lIlt~-g~~~~~~v~~la~~~~i~ii~-t~~dt~~t~~~l~~-------~~~V~~iM~~~--~~~~~~~~ 263 (546)
T PRK14869 195 LAAIEAGVRLLIITG-GAPVSEDVLELAKENGVTVIS-TPYDTFTTARLINQ-------SIPVSYIMTTE--DLVTFSKD 263 (546)
T ss_pred HHHHHcCCCEEEECC-CCCCCHHHHHHHHhCCCeEEE-ecccHHHHHHHhhc-------CCCHHHhccCC--CcEEECCC
Confidence 368999999999998 66766655 45567899999 8888 766655554 348999999 6 79999999
Q ss_pred CCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCC--CC-CCCCcccccc--cchhhHHHHHHHHHhhcC
Q 026495 102 TTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGS--GR-ADNSMFPEVD--STWKTFNEVQKLLSKTNG 176 (237)
Q Consensus 102 ~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~--~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 176 (237)
+++.++.+.|.+++++.+||+|++|+++|++|.+|+.+.....-. .. .........+ +.++.+ ..
T Consensus 264 ~~~~~~~~~m~~~~~~~~PVvd~~g~lvGiit~~dl~~~~~~~~iLVD~~e~~q~~~~~~~~~i~~ii----------DH 333 (546)
T PRK14869 264 DYLEDVKEVMLKSRYRSYPVVDEDGKVVGVISRYHLLSPVRKKVILVDHNEKSQAVEGIEEAEILEII----------DH 333 (546)
T ss_pred CcHHHHHHHHHhcCCCceEEEcCCCCEEEEEEHHHhhccccCceEEEcCccccccccchhhceEEEEe----------cC
Confidence 999999999999999999999999999999999999974221000 00 0000000000 000000 12
Q ss_pred CccccccccCceEE---cCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEcccC
Q 026495 177 KMVGDLMTPAPVVV---RETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSKG 229 (237)
Q Consensus 177 ~~v~~im~~~~~~v---~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d~ 229 (237)
.+++++++..+..+ +...+..-+.++|.+.++...|++. ..-+.|+++-++.
T Consensus 334 H~~~~~~~~~pi~~~~~~~gst~tiv~~~~~~~~i~~~~~ia-~~ll~gIlsDT~~ 388 (546)
T PRK14869 334 HRLGDIQTSNPIFFRNEPVGSTSTIVARMYRENGIEPSPEIA-GLLLAAILSDTLL 388 (546)
T ss_pred CccCCCCCCCCcEEEeeeeeeHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHHHhcC
Confidence 24566776665444 4466677888999999988777765 4567888865543
No 92
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=99.17 E-value=3.7e-11 Score=96.19 Aligned_cols=120 Identities=22% Similarity=0.300 Sum_probs=102.7
Q ss_pred CCCcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCC-CcEEEEEehHhHhhhccccCCCCCCCCccccc
Q 026495 79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPEV 157 (237)
Q Consensus 79 ~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~ 157 (237)
....++|+++|.|+....++..+.++.+.+..+.+..++++||+.++ +.+.|++..+||++++...
T Consensus 63 ~iadl~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~------------- 129 (293)
T COG4535 63 DIADLRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRSD------------- 129 (293)
T ss_pred HHHHhhHhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcCC-------------
Confidence 34567999999999899999999999999999999999999999654 7899999999999753211
Q ss_pred ccchhhHHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495 158 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK 228 (237)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d 228 (237)
...-.+.+++ ++..+|+++..+...++-|....++...|+|+.|.+.|+||..|
T Consensus 130 ----------------~~~F~i~~lL-RPav~VPESKrvd~lLkeFR~~RnHMAIViDEfGgVsGLVTIED 183 (293)
T COG4535 130 ----------------AEPFDIKELL-RPAVVVPESKRVDRLLKEFRSQRNHMAIVIDEFGGVSGLVTIED 183 (293)
T ss_pred ----------------cccccHHHhc-ccceecccchhHHHHHHHHHhhcCceEEEEeccCCeeeeEEHHH
Confidence 1123466655 56778999999999999999999999999999999999999876
No 93
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=99.12 E-value=1.7e-10 Score=73.60 Aligned_cols=54 Identities=46% Similarity=0.722 Sum_probs=51.0
Q ss_pred ccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhh
Q 026495 85 VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (237)
Q Consensus 85 v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~ 140 (237)
|+++|.+ +++++++++++.++++.|.+++.+++||+|++|+++|++|.+||+++
T Consensus 1 v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~ 54 (57)
T PF00571_consen 1 VGDIMTP--PPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKA 54 (57)
T ss_dssp HHHHSBS--SSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHH
T ss_pred CeECCcC--CCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhh
Confidence 4688998 89999999999999999999999999999999999999999999974
No 94
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=99.08 E-value=1.6e-10 Score=103.82 Aligned_cols=152 Identities=22% Similarity=0.244 Sum_probs=113.0
Q ss_pred CCCCCcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCC-----CcEEEEEehHhHhhhccccCCCCCCC
Q 026495 77 APSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-----WKLVGLVSDYDLLALDSISGSGRADN 151 (237)
Q Consensus 77 ~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~-----~~~~Givt~~dl~~~~~~~~~~~~~~ 151 (237)
...+++++++|+|++ ++++++.-+.+....+.++.+.++.+||+|+. +++.|+|-+++++.++..+-+....+
T Consensus 576 e~~mr~L~a~ev~~~--pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~~~~ 653 (762)
T KOG0474|consen 576 EPYMRNLTAGEVMSK--PVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVEESR 653 (762)
T ss_pred chHhhhhhHhhhccC--CeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhhhccCc
Confidence 455788899999999 89999999999999999999999999999962 47889999999987655443322211
Q ss_pred Ccc--c--------ccccchhhHHHHHHH-HHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcE
Q 026495 152 SMF--P--------EVDSTWKTFNEVQKL-LSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWN 220 (237)
Q Consensus 152 ~~~--~--------~~~~~~~~~~~~~~~-~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~ 220 (237)
.-. + +...+-..++++... .+...-..+..+|.+.|++|.+++++.+++.+|.+-+.+++.||+..+++
T Consensus 654 ~~~~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~~~ 733 (762)
T KOG0474|consen 654 STFDLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVPKTNRV 733 (762)
T ss_pred cccCcchhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhcceeEEEecCCCce
Confidence 111 0 011111111111111 11122346778899999999999999999999999999999999988999
Q ss_pred EEEEEcccCC
Q 026495 221 YHKRKCSKGG 230 (237)
Q Consensus 221 iGvIt~~d~~ 230 (237)
+|++|++|--
T Consensus 734 ~gilTR~D~~ 743 (762)
T KOG0474|consen 734 VGILTRKDLA 743 (762)
T ss_pred eEEEehhhhh
Confidence 9999999853
No 95
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.98 E-value=9.7e-10 Score=70.06 Aligned_cols=50 Identities=40% Similarity=0.585 Sum_probs=46.9
Q ss_pred cccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495 179 VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK 228 (237)
Q Consensus 179 v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d 228 (237)
++++|.++++++++++++.++++.|.+++++.+||+|++|+++|+||.+|
T Consensus 1 v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~d 50 (57)
T PF00571_consen 1 VGDIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSD 50 (57)
T ss_dssp HHHHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHH
T ss_pred CeECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHH
Confidence 35789999999999999999999999999999999998999999999876
No 96
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.92 E-value=1.6e-08 Score=88.52 Aligned_cols=101 Identities=21% Similarity=0.251 Sum_probs=85.8
Q ss_pred eeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHhh
Q 026495 95 LHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKT 174 (237)
Q Consensus 95 ~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (237)
.....++.+..++...|...+...+.|+|+++++.|+++.+++..+..
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-------------------------------- 299 (363)
T TIGR01186 252 PITKTADKGPRSALQLMRDERVDSLYVVDRQNKLVGVVDVESIKQARK-------------------------------- 299 (363)
T ss_pred ceeecCCCCHHHHHHHHHhcCCceEEEEcCCCCEEEEEeHHHHHHHhh--------------------------------
Confidence 344566778999999999999999999999999999999999875321
Q ss_pred cCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495 175 NGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK 228 (237)
Q Consensus 175 ~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d 228 (237)
....+.+.+....+++.+++++.+++..|.+++.. +||+|++|+++|+|++.+
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~i~~~~ 352 (363)
T TIGR01186 300 KAQGLQDVLIDDIYTVDAGTLLRETVRKVLKAGIK-VPVVDEDQRLVGIVTRGS 352 (363)
T ss_pred cCCchhhhhccCCceECCCCcHHHHHHHHHhCCCC-EEEECCCCcEEEEEEHHH
Confidence 12356777777788999999999999999999998 999999999999999764
No 97
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.92 E-value=1.3e-08 Score=90.20 Aligned_cols=113 Identities=21% Similarity=0.170 Sum_probs=90.0
Q ss_pred ccccccccccCc-eeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccch
Q 026495 83 YTVGDFMTTKEE-LHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTW 161 (237)
Q Consensus 83 ~~v~~im~~~~~-~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~ 161 (237)
.++.++|.+... .+...++.+..+++..|...+.+.++|+|+++++.|+++.+++.+...
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~------------------- 334 (400)
T PRK10070 274 FSAKDIARRTPNGLIRKTPGFGPRSALKLLQDEDREYGYVIERGNKFVGAVSIDSLKTALT------------------- 334 (400)
T ss_pred cchhhhhhcCcccccccCCCCCHHHHHHHHHhcCCceEEEEcCCCcEEEEEeHHHHHhhhh-------------------
Confidence 456677754101 122346678899999999999999999999999999999999975321
Q ss_pred hhHHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495 162 KTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK 228 (237)
Q Consensus 162 ~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d 228 (237)
....+.+.+.....++.+++++.+++..+.+.... +||||++|+++|+|++.+
T Consensus 335 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~~~~~~ 387 (400)
T PRK10070 335 -------------QQQGLDAALIDAPLAVDAQTPLSELLSHVGQAPCA-VPVVDEDQQYVGIISKGM 387 (400)
T ss_pred -------------cCCchhhhhccCCceeCCCCCHHHHHHHHHhCCCc-EEEECCCCcEEEEEEHHH
Confidence 12346666777788999999999999999998876 999999999999999764
No 98
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=98.91 E-value=7.2e-09 Score=91.00 Aligned_cols=116 Identities=29% Similarity=0.354 Sum_probs=90.2
Q ss_pred ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHh
Q 026495 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (237)
Q Consensus 94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (237)
.+..+..++++.+|++.|.+.+++.+||+|..|+.+|.++..|+........+....... +....
T Consensus 238 ~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g~~v~~~s~~Dv~~l~~~~~~~~~~~~~-------------l~~~~-- 302 (381)
T KOG1764|consen 238 NIASISEDTPVIEALKIMSERRISALPVVDENGKKVGNYSRFDVIHLAREGTYNNLDLSC-------------LSEAL-- 302 (381)
T ss_pred hheeecCCCcHHHHHHHHHhcCcCcceEEcCCCceecceehhhhhhhhhcCccCccchhH-------------HHHHh--
Confidence 488899999999999999999999999999999999999999998765444332211100 00000
Q ss_pred hcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495 174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK 228 (237)
Q Consensus 174 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d 228 (237)
.....-...+.++.++.+|.+++..|..++.+++.|||++|.++|+||.+|
T Consensus 303 ----~~~~~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~~~~l~GvvSLsD 353 (381)
T KOG1764|consen 303 ----SHRPIRFEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVDEDGVLVGVISLSD 353 (381)
T ss_pred ----hhcccccCccEEEeecchHHHHHHHHHhcCceEEEEEcCCCcEEEEeeHHH
Confidence 011111223688999999999999999999999999998899999999876
No 99
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=98.84 E-value=1.7e-08 Score=82.08 Aligned_cols=89 Identities=16% Similarity=0.235 Sum_probs=76.9
Q ss_pred hccCCCceEEecCCce-eeeehhhhcccCCCCCcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcE
Q 026495 50 ATSSDRVSALRRSSAV-FASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKL 128 (237)
Q Consensus 50 ~~~~~~v~v~~~sp~~-~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~ 128 (237)
+.+..+.|+..+...- +.+...+..+......+.+|+++|++ ++++++.++.+.||+++|..++..++.|+|.+|++
T Consensus 200 ~~~i~GaPVvd~dk~vGiit~~dI~~aia~g~~~~kV~~~M~k--~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~gkp 277 (294)
T COG2524 200 EKGIRGAPVVDDDKIVGIITLSDIAKAIANGNLDAKVSDYMRK--NVITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKP 277 (294)
T ss_pred HcCccCCceecCCceEEEEEHHHHHHHHHcCCccccHHHHhcc--CCceEcCchhHHHHHHHHHhcCcceEEEEccCCcE
Confidence 5666677888755444 66677777666777788899999999 89999999999999999999999999999999999
Q ss_pred EEEEehHhHhhh
Q 026495 129 VGLVSDYDLLAL 140 (237)
Q Consensus 129 ~Givt~~dl~~~ 140 (237)
+|++|+.|++..
T Consensus 278 vGiITrTDIL~~ 289 (294)
T COG2524 278 VGIITRTDILTR 289 (294)
T ss_pred EEEEehHHHHHH
Confidence 999999999964
No 100
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=98.83 E-value=7.1e-09 Score=89.19 Aligned_cols=104 Identities=34% Similarity=0.448 Sum_probs=92.9
Q ss_pred ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcC---CCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHH
Q 026495 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDD---DWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKL 170 (237)
Q Consensus 94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~---~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (237)
++.++.++.++.++++....+++..+||.++ .++++|+||.+|+-..
T Consensus 117 ~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~f~------------------------------ 166 (503)
T KOG2550|consen 117 NPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQFL------------------------------ 166 (503)
T ss_pred CCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhhhhh------------------------------
Confidence 4678899999999999999999999999974 3689999999998642
Q ss_pred HHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEcccC
Q 026495 171 LSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSKG 229 (237)
Q Consensus 171 ~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d~ 229 (237)
+.....++++|++++.+.+...++.++-+++.++....+||||++|+++.+|++.|-
T Consensus 167 --~~~~~~~~~vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl 223 (503)
T KOG2550|consen 167 --EDNSLLVSDVMTKNPVTGAQGITLKEANEILKKIKKGKLPVVDDKGELVAMLSRTDL 223 (503)
T ss_pred --hcccchhhhhcccccccccccccHHHHHHHHHhhhcCCcceeccCCceeeeeehhhh
Confidence 234678999999988899999999999999999999999999999999999999885
No 101
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.74 E-value=8.3e-08 Score=69.38 Aligned_cols=56 Identities=25% Similarity=0.341 Sum_probs=51.5
Q ss_pred cccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (237)
Q Consensus 82 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~ 139 (237)
..++.++|.. .+.++.+++++.++++.|.+++.+.+||+|++|+++|+||.+|+++
T Consensus 55 ~~~v~~~~~~--~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~~~~~Giit~~di~~ 110 (111)
T cd04603 55 TLKVCEVYIV--PVPIVYCDSKVTDLLRIFRETEPPVVAVVDKEGKLVGTIYERELLR 110 (111)
T ss_pred ccChhheeec--CCcEECCCCcHHHHHHHHHHcCCCeEEEEcCCCeEEEEEEhHHhhc
Confidence 3468899987 7889999999999999999999999999998899999999999985
No 102
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=98.69 E-value=1.9e-08 Score=89.52 Aligned_cols=169 Identities=12% Similarity=0.047 Sum_probs=106.8
Q ss_pred CCEEEEecCccchhHHH-hccCCCceEEecCCce---eeeehhhhcccCCCCCcccccccccccCceeEEcCCCCHHHHH
Q 026495 33 LPCLLLSRPGCRVFSVL-ATSSDRVSALRRSSAV---FASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEAL 108 (237)
Q Consensus 33 v~~li~~~~~~~v~~~~-~~~~~~v~v~~~sp~~---~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~ 108 (237)
+.++....+..++.+.+ ...++++|++.++..+ ....+.+..... ....+++++|++ +.+++++.++.+++
T Consensus 203 v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~--~~~~~l~~~~~~---~~~Vpe~~~l~~ll 277 (408)
T TIGR03520 203 IFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLN--KKNFDWQSLLRE---PYFVPENKKLDDLL 277 (408)
T ss_pred EEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhc--cCCCCHHHHcCC---CeEeCCCCcHHHHH
Confidence 33444444455555666 7888899999876544 222222221111 123467888876 78999999999999
Q ss_pred HHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHhhcCCccccccccCce
Q 026495 109 EILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPV 188 (237)
Q Consensus 109 ~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~ 188 (237)
+.|++++.+.++|+|+.|...|+||.+|+++.+.- +. .+..+ .....+.. ......
T Consensus 278 ~~m~~~~~~~aiVvDE~G~~~GiVT~eDileeivg------------ei----------~de~d-~~~~~i~~-~~~~~~ 333 (408)
T TIGR03520 278 RDFQEKKNHLAIVVDEYGGTSGLVTLEDIIEEIVG------------DI----------SDEFD-DEDLIYSK-IDDNNY 333 (408)
T ss_pred HHHHhcCceEEEEEcCCCCEEEEEEHHHHHHHHhC------------CC----------CCcCC-cCccceEE-eCCCeE
Confidence 99999999999999998999999999999975310 00 00000 00111222 123457
Q ss_pred EEcCCCCHHHHHHHHHHcCCcEEEEE-cCCCcEEEEEEcccCCC
Q 026495 189 VVRETTNLEDAARLLLETKYRRLPVV-DADGWNYHKRKCSKGGS 231 (237)
Q Consensus 189 ~v~~~~~l~~a~~~m~~~~~~~lpVv-d~~~~~iGvIt~~d~~~ 231 (237)
.++..+++.++.+.|.-. ...++.. ++.+.+-|++...-|++
T Consensus 334 ~v~G~~~l~~l~~~l~~~-~~~~~~~~~~~~Tl~G~i~~~l~~i 376 (408)
T TIGR03520 334 VFEGKTSLKDFYKILKLE-EDMFDEVKGEAETLAGFLLEISGGF 376 (408)
T ss_pred EEEeccCHHHHHHHhCCC-ccccCCcCCCCccHHHHHHHHhCcC
Confidence 788899999998888442 1112222 23456777776666654
No 103
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=98.67 E-value=4.6e-08 Score=88.13 Aligned_cols=99 Identities=15% Similarity=0.261 Sum_probs=79.5
Q ss_pred CcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccc
Q 026495 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDST 160 (237)
Q Consensus 81 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~ 160 (237)
...+++++|++ +++++++++++.++++.|.+++...+||+|++|+++|+||.+|+.+.+.
T Consensus 193 ~~~~v~~im~~--~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g~lvGiIt~~Dil~~l~------------------ 252 (449)
T TIGR00400 193 PEEILSSIMRS--SVFSIVGVNDQEEVARLIQKYDFLAVPVVDNEGRLVGIVTVDDIIDVIQ------------------ 252 (449)
T ss_pred CCCcHHHHhCC--CCeeECCCCCHHHHHHHHHHcCCCEEeEEcCCCeEEEEEEHHHHHHHHH------------------
Confidence 34579999998 7889999999999999999999999999999999999999999997431
Q ss_pred hhhHHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEE
Q 026495 161 WKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVV 214 (237)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv 214 (237)
...-+++|.....+..+++.+.+++..|.+++..+++|.
T Consensus 253 ---------------~~~~ed~~~~~gv~~~~~~~l~~~~~~~~~~R~~wL~v~ 291 (449)
T TIGR00400 253 ---------------SEATEDFYMIAAVKPLDDSYFDTSILVMAKNRIIWLLVL 291 (449)
T ss_pred ---------------hhhHHHHHHhcCCCCCcchhhhchHHHHHHhccchHHHH
Confidence 112255665554444457788999999999888877664
No 104
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=98.58 E-value=2.2e-07 Score=79.13 Aligned_cols=106 Identities=17% Similarity=0.163 Sum_probs=74.4
Q ss_pred CCEEEEecCccchhHHH-hccCCCceEEecCCce---eeeehhhhcccCCCCCcccccccccccCceeEEcCCCCHHHHH
Q 026495 33 LPCLLLSRPGCRVFSVL-ATSSDRVSALRRSSAV---FASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEAL 108 (237)
Q Consensus 33 v~~li~~~~~~~v~~~~-~~~~~~v~v~~~sp~~---~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~ 108 (237)
+.++....+...+.+.+ ....+.+|++.++..+ ....+.+............+.++|++ +.+++++.++.+++
T Consensus 79 i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~l~~l~r~---~~~V~e~~~l~~~L 155 (292)
T PRK15094 79 MITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDAEAFSMDKVLRQ---AVVVPESKRVDRML 155 (292)
T ss_pred EEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHhhccCCcCCHHHHcCC---CcCcCCCCcHHHHH
Confidence 44555455455555556 6667889998755333 22222222111111123457889987 56899999999999
Q ss_pred HHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhc
Q 026495 109 EILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (237)
Q Consensus 109 ~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~ 141 (237)
+.|++++.+.+||+|+.|.++|+||.+|+++.+
T Consensus 156 ~~m~~~~~~~a~VvDe~G~viGiVTleDIle~i 188 (292)
T PRK15094 156 KEFRSQRYHMAIVIDEFGGVSGLVTIEDILELI 188 (292)
T ss_pred HHHHhcCCEEEEEEeCCCCEEEEeEHHHHHHHH
Confidence 999999999999999889999999999999753
No 105
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.56 E-value=4.2e-07 Score=65.90 Aligned_cols=57 Identities=18% Similarity=0.413 Sum_probs=52.1
Q ss_pred CcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (237)
Q Consensus 81 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~ 139 (237)
...+++++|.. +++++.+++++.++++.|.+++...+||+|++|+++|+|+.+|+++
T Consensus 57 ~~~~v~~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~Gvi~~~dl~~ 113 (114)
T cd04619 57 CTAPVENVMTR--AVVSCRPGDLLHDVWQVMKQRGLKNIPVVDENARPLGVLNARDALK 113 (114)
T ss_pred ccCCHHHHhcC--CCeeECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEEEhHhhcc
Confidence 34678899988 7899999999999999999999999999998899999999999874
No 106
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.54 E-value=1.8e-07 Score=68.19 Aligned_cols=84 Identities=21% Similarity=0.242 Sum_probs=63.2
Q ss_pred CCceEEecCCceeeeehhhhcc--cCCCCCc--ccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEE
Q 026495 54 DRVSALRRSSAVFASGTLTANS--AAPSSGV--YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLV 129 (237)
Q Consensus 54 ~~v~v~~~sp~~~~~~~~~~~~--~~~~~~~--~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~ 129 (237)
.+++.+.++|.+..++.+.... .+....+ .+++++|.+ ++.++++++++.++++.|.+.+.+.+||+|++|+++
T Consensus 25 ~~~~~~~g~~n~e~~~vl~~~~~~~p~ll~~v~~~v~dim~~--~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~ 102 (113)
T cd04597 25 NVTAARLGEPNPQTRYVLEYLGIEPPILLADVHPRVRDVINR--KPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPA 102 (113)
T ss_pred ceeehhcCCCCHHHHHHHHHcCCCCchhhcchhhhHHHhcCC--CCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEE
Confidence 4466666666554443332221 1111222 679999988 789999999999999999999999999999889999
Q ss_pred EEEehHhHhh
Q 026495 130 GLVSDYDLLA 139 (237)
Q Consensus 130 Givt~~dl~~ 139 (237)
|+|+.+||.+
T Consensus 103 Givt~~dl~~ 112 (113)
T cd04597 103 GIITLLDLAE 112 (113)
T ss_pred EEEEHHHhhc
Confidence 9999999873
No 107
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.53 E-value=8.1e-07 Score=63.64 Aligned_cols=56 Identities=32% Similarity=0.496 Sum_probs=51.6
Q ss_pred cccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (237)
Q Consensus 82 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~ 139 (237)
..++.++|.+ .+.++++++++.++++.|.+.+...+||++++|+++|+++..|+.+
T Consensus 52 ~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~di~~ 107 (108)
T cd04596 52 DTTIEKVMTK--NPITVNPKTSVASVAHMMIWEGIEMLPVVDDNKKLLGIISRQDVLK 107 (108)
T ss_pred cccHHHHhcC--CCeEECCCCCHHHHHHHHHHcCCCeeeEEcCCCCEEEEEEHHHhhc
Confidence 4578899987 7899999999999999999999999999998899999999999874
No 108
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.51 E-value=9.5e-07 Score=64.71 Aligned_cols=57 Identities=37% Similarity=0.622 Sum_probs=51.9
Q ss_pred CcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (237)
Q Consensus 81 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~ 139 (237)
...++.++|.+ .+.++++++++.++++.|.+.+.+.+||+|++|+++|++|..|+++
T Consensus 67 ~~~~i~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~~ 123 (124)
T cd04600 67 KPETVGDIMSP--PVVTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIA 123 (124)
T ss_pred ccccHHHhccC--CCeeeCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhhc
Confidence 34578899987 7999999999999999999999999999998899999999999974
No 109
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.47 E-value=1.1e-06 Score=63.06 Aligned_cols=56 Identities=41% Similarity=0.673 Sum_probs=51.1
Q ss_pred CcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (237)
Q Consensus 81 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~ 139 (237)
...++.++|.+ .+.++++++++.+++..|.+.+.+.+||++ +|+++|+||..|+++
T Consensus 54 ~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Gvvt~~di~~ 109 (110)
T cd04595 54 GHAPVKDYMST--DVVTVPPDTPLSEVQELMVEHDIGRVPVVE-DGRLVGIVTRTDLLR 109 (110)
T ss_pred ccCcHHHHhcC--CCEEECCCCcHHHHHHHHHHcCCCeeEEEe-CCEEEEEEEhHHhhc
Confidence 45678899988 799999999999999999999999999999 789999999999874
No 110
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=98.47 E-value=1.3e-06 Score=62.59 Aligned_cols=57 Identities=35% Similarity=0.491 Sum_probs=51.7
Q ss_pred CcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (237)
Q Consensus 81 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~ 139 (237)
...+++++|.+ .+.++++++++.++++.|.+.+.+.+||+|++|++.|+|+.+|+.+
T Consensus 54 ~~~~v~~~~~~--~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~~ 110 (111)
T cd04611 54 LQTPVGEVMSS--PLLTVPADTSLYDARQLMREHGIRHLVVVDDDGELLGLLSQTDLLQ 110 (111)
T ss_pred CCcCHHHhcCC--CceEECCCCCHHHHHHHHHHcCCeEEEEECCCCcEEEEEEhHHhhc
Confidence 45678899987 7899999999999999999999999999998899999999999874
No 111
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.47 E-value=7.8e-07 Score=64.30 Aligned_cols=58 Identities=29% Similarity=0.461 Sum_probs=50.5
Q ss_pred cccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (237)
Q Consensus 82 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~ 139 (237)
..++.++|.+...++++.+++++.++++.|.+++.+.+||+|++|+++|+++.+|+++
T Consensus 56 ~~~v~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~~ 113 (114)
T cd04801 56 QTTVIQVMTPAAKLVTVLSEESLAEVLKLLEEQGLDELAVVEDSGQVIGLITEADLLR 113 (114)
T ss_pred ccchhhhhcccccceEECCCCcHHHHHHHHHHCCCCeeEEEcCCCcEEEEEeccceec
Confidence 4578889975224678999999999999999999999999998789999999999874
No 112
>PRK11573 hypothetical protein; Provisional
Probab=98.43 E-value=8.9e-07 Score=78.93 Aligned_cols=105 Identities=14% Similarity=0.028 Sum_probs=73.4
Q ss_pred CCEEEEecCccchhHHH-hccCCCceEEecCCceeeeehhhh--cccC---CCCCcccccccccccCceeEEcCCCCHHH
Q 026495 33 LPCLLLSRPGCRVFSVL-ATSSDRVSALRRSSAVFASGTLTA--NSAA---PSSGVYTVGDFMTTKEELHVVKPTTTVDE 106 (237)
Q Consensus 33 v~~li~~~~~~~v~~~~-~~~~~~v~v~~~sp~~~~~~~~~~--~~~~---~~~~~~~v~~im~~~~~~~~v~~~~~l~~ 106 (237)
+-++....+..++.+.+ ...++++|++.++..+....-... +... .......+.+++++ +.+++++.++.+
T Consensus 199 i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~~~~~~~~~l~~~~r~---~~~Vpe~~~l~~ 275 (413)
T PRK11573 199 IVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKKEFTKENMLRAADE---IYFVPEGTPLST 275 (413)
T ss_pred EEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhccCcCCHHHHHhhccC---CeEeCCCCcHHH
Confidence 33444444445555556 788899999997766632222211 1111 11111234456665 889999999999
Q ss_pred HHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhh
Q 026495 107 ALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (237)
Q Consensus 107 ~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~ 140 (237)
+++.|++++.+.+.|+|+.|...|+||.+|+++.
T Consensus 276 lL~~~~~~~~~~AiVvDEyG~~~GiVTleDilEe 309 (413)
T PRK11573 276 QLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEE 309 (413)
T ss_pred HHHHHHhcCCeEEEEEecCCCeEEEeeHHHHHHH
Confidence 9999999999999999999999999999999974
No 113
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.42 E-value=2.4e-06 Score=60.78 Aligned_cols=56 Identities=27% Similarity=0.537 Sum_probs=50.8
Q ss_pred cccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (237)
Q Consensus 82 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~ 139 (237)
..+++++|.+ .+.++.+++++.++++.|.+++...+||++++|+++|+++..|+++
T Consensus 51 ~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvi~~~di~~ 106 (107)
T cd04610 51 DETVEEIMSK--DLVVAVPEMDIMDAARVMFRTGISKLPVVDENNNLVGIITNTDVIR 106 (107)
T ss_pred cccHHHhCCC--CCeEECCCCCHHHHHHHHHHhCCCeEeEECCCCeEEEEEEHHHhhc
Confidence 3468899987 7889999999999999999999999999998899999999999974
No 114
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.42 E-value=1.5e-06 Score=62.34 Aligned_cols=56 Identities=27% Similarity=0.414 Sum_probs=50.8
Q ss_pred cccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (237)
Q Consensus 82 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~ 139 (237)
..++.++|.. .++++++++++.++++.|.+++...+||++++|+++|++|.+|+.+
T Consensus 55 ~~~v~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~ 110 (111)
T cd04639 55 DAPVRGVMRR--DFPTVSPSATLDAVLRLMQQGGAPAVPVVDGSGRLVGLVTLENVGE 110 (111)
T ss_pred CCcHHHHhcC--CCcEECCCCcHHHHHHHHHhcCCceeeEEcCCCCEEEEEEHHHhhc
Confidence 3478889987 7999999999999999999999999999997799999999999874
No 115
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=98.41 E-value=4.5e-07 Score=75.33 Aligned_cols=62 Identities=24% Similarity=0.276 Sum_probs=54.8
Q ss_pred HHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEcccC
Q 026495 168 QKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSKG 229 (237)
Q Consensus 168 ~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d~ 229 (237)
+.+..........++|++++.++++++++.+|.++|.++++..+||+|++.+++|+|+.+|-
T Consensus 236 qa~~R~~~~LtcadIMSrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl 297 (382)
T COG3448 236 QALRRRMGELTCADIMSRDVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDL 297 (382)
T ss_pred HHHHHHhccccHHHhcCccceecCCcCChHHHHHHHHHcCcccccccccccceeeeeeHHHH
Confidence 33334455677899999999999999999999999999999999999999999999999873
No 116
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=98.40 E-value=1.4e-06 Score=79.29 Aligned_cols=104 Identities=23% Similarity=0.293 Sum_probs=70.5
Q ss_pred cCCEEEEecCccchhHHH-hccCCCceEEecCCce--eeeehhhhcccCCCCCccccccccc-ccCceeEEcCCCCHHHH
Q 026495 32 QLPCLLLSRPGCRVFSVL-ATSSDRVSALRRSSAV--FASGTLTANSAAPSSGVYTVGDFMT-TKEELHVVKPTTTVDEA 107 (237)
Q Consensus 32 ~v~~li~~~~~~~v~~~~-~~~~~~v~v~~~sp~~--~~~~~~~~~~~~~~~~~~~v~~im~-~~~~~~~v~~~~~l~~~ 107 (237)
.+.++....+..++.+.+ ......+|+..+...- ....+.+.. . .....+++++|. . +++++++++++.++
T Consensus 96 ~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~~--~-~~~~~~V~dim~~~--~~v~v~~~~sl~ea 170 (486)
T PRK05567 96 DPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVRF--E-TDLSQPVSEVMTKE--RLVTVPEGTTLEEA 170 (486)
T ss_pred CCeEeCCCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhhh--c-ccCCCcHHHHcCCC--CCEEECCCCCHHHH
Confidence 333333333333344444 4455677777632211 222222221 1 123457899997 4 68899999999999
Q ss_pred HHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhh
Q 026495 108 LEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (237)
Q Consensus 108 ~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~ 140 (237)
++.|.+++.+.+||+|++|+++|+||.+||++.
T Consensus 171 l~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~ 203 (486)
T PRK05567 171 LELLHEHRIEKLPVVDDNGRLKGLITVKDIEKA 203 (486)
T ss_pred HHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhh
Confidence 999999999999999999999999999999975
No 117
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.40 E-value=2.5e-06 Score=62.27 Aligned_cols=57 Identities=39% Similarity=0.612 Sum_probs=51.8
Q ss_pred CcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (237)
Q Consensus 81 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~ 139 (237)
...++.++|.. ++.++++++++.++++.|.+.+...+||+|++|+++|++|..|+++
T Consensus 65 ~~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~~ 121 (122)
T cd04803 65 RDVPVAEVMKT--DVLTVTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFLR 121 (122)
T ss_pred cCcCHHHhhCC--CCeEeCCCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhhc
Confidence 45678889987 7899999999999999999999999999998789999999999974
No 118
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=98.39 E-value=2.4e-06 Score=61.14 Aligned_cols=55 Identities=22% Similarity=0.412 Sum_probs=50.3
Q ss_pred ccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495 83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (237)
Q Consensus 83 ~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~ 139 (237)
.++.++|.+ ++.++++++++.++++.|.+.+...+||++++|++.|+++.+|+.+
T Consensus 55 ~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 109 (110)
T cd04588 55 AKVKDVMTK--DVITIDEDEQLYDAIRLMNKHNVGRLIVTDDEGRPVGIITRTDILR 109 (110)
T ss_pred cCHHHHhcC--CceEECCCCCHHHHHHHHHhcCCCEEEEECCCCCEEEEEEhHHhhc
Confidence 568888887 7899999999999999999999999999998899999999999874
No 119
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.38 E-value=2.4e-06 Score=61.77 Aligned_cols=56 Identities=25% Similarity=0.467 Sum_probs=49.9
Q ss_pred cccccccccccCceeEEcCC--CCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495 82 VYTVGDFMTTKEELHVVKPT--TTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (237)
Q Consensus 82 ~~~v~~im~~~~~~~~v~~~--~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~ 139 (237)
..++.++|.+ .++++.++ +++.++++.|.+++...+||+|++|+++|+||.+|+++
T Consensus 57 ~~~i~~~~~~--~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~~ 114 (115)
T cd04620 57 DLPIGEVMTQ--PVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQGQLIGLVTAESIRQ 114 (115)
T ss_pred ccCHHHhcCC--CcEEEecccccCHHHHHHHHHHhCCceEEEEcCCCCEEEEEEhHHhhc
Confidence 3578889987 78888876 78999999999999999999998899999999999975
No 120
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=98.37 E-value=3.1e-06 Score=72.99 Aligned_cols=114 Identities=18% Similarity=0.159 Sum_probs=75.2
Q ss_pred chhhhhcc--CCEEEEecCccchhHHH-hccCCCceEEecCC--ceeeeehhhh-cccCCCCCcccccccccccCceeEE
Q 026495 25 GRTSFALQ--LPCLLLSRPGCRVFSVL-ATSSDRVSALRRSS--AVFASGTLTA-NSAAPSSGVYTVGDFMTTKEELHVV 98 (237)
Q Consensus 25 ~~~ai~~~--v~~li~~~~~~~v~~~~-~~~~~~v~v~~~sp--~~~~~~~~~~-~~~~~~~~~~~v~~im~~~~~~~~v 98 (237)
....+.+. ++.+....+...+.+.+ ......+++..+.. ........+. ..........+++++|.+ +++++
T Consensus 199 V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g~~iG~vt~~dl~~~~~~~~~~~~~v~~im~~--~~~~v 276 (321)
T PRK11543 199 VHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLRRWLVGGGALTTPVNEAMTR--GGTTL 276 (321)
T ss_pred HHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEecHHHHHHHHhCCCCcCCcHHHhcCC--CCEEE
Confidence 33446666 66654444344444444 33334566665332 1122211111 111112234568999998 88999
Q ss_pred cCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhh
Q 026495 99 KPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (237)
Q Consensus 99 ~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~ 140 (237)
.+++++.++++.|.+++...+||+|++|+++|+||.+|++++
T Consensus 277 ~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di~~~ 318 (321)
T PRK11543 277 QAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQA 318 (321)
T ss_pred CCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHhc
Confidence 999999999999999999999999988999999999999863
No 121
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.37 E-value=3e-06 Score=61.25 Aligned_cols=56 Identities=23% Similarity=0.386 Sum_probs=51.0
Q ss_pred CcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (237)
Q Consensus 81 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~ 139 (237)
...++.++|.. +++++++++++.++++.|.+.+...+||+|+ |+++|+|+..|+++
T Consensus 58 ~~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~Gvi~~~dl~~ 113 (114)
T cd04630 58 DRVNVYEIMTK--PLISVSPDMDIKYCARLMERTNIRRAPVVEN-NELIGIISLTDIFL 113 (114)
T ss_pred CccCHHHHhcC--CCeeECCCCCHHHHHHHHHHcCCCEeeEeeC-CEEEEEEEHHHhhc
Confidence 34678899987 7999999999999999999999999999997 99999999999974
No 122
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.35 E-value=7.9e-06 Score=74.42 Aligned_cols=61 Identities=33% Similarity=0.371 Sum_probs=54.9
Q ss_pred CCcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhh
Q 026495 80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (237)
Q Consensus 80 ~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~ 140 (237)
....+++++|++..+++++++++++.+|+++|.+++++.+||+|++|+++|+||.+|+++.
T Consensus 158 ~~~~~V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~ 218 (502)
T PRK07107 158 SLDTKVKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSH 218 (502)
T ss_pred CCCCCHHHHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhc
Confidence 3456899999864468899999999999999999999999999988999999999999974
No 123
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=98.35 E-value=3.6e-06 Score=60.02 Aligned_cols=55 Identities=27% Similarity=0.547 Sum_probs=50.5
Q ss_pred ccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495 83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (237)
Q Consensus 83 ~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~ 139 (237)
.++.++|.+ .+.++++++++.++++.|.+.+...+||++++|+++|++|.+|+++
T Consensus 54 ~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~~g~~~Gvit~~~l~~ 108 (109)
T cd04583 54 KSLEDIMLE--DVFTVQPDASLRDVLGLVLKRGPKYVPVVDEDGKLVGLITRSSLVD 108 (109)
T ss_pred CcHhHhhcC--CceEECCCCcHHHHHHHHHHcCCceeeEECCCCeEEEEEehHHhhc
Confidence 467888987 7899999999999999999999999999998899999999999874
No 124
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.35 E-value=3.9e-06 Score=60.18 Aligned_cols=55 Identities=40% Similarity=0.600 Sum_probs=50.4
Q ss_pred cccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (237)
Q Consensus 82 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~ 139 (237)
..++.++|.+ ++.++++++++.++++.|.+.+.+.+||+++ |+++|+||.+|+.+
T Consensus 58 ~~~~~~~~~~--~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~ 112 (113)
T cd04623 58 DTPVSEIMTR--NVITVTPDDTVDEAMALMTERRFRHLPVVDG-GKLVGIVSIGDVVK 112 (113)
T ss_pred ccCHHHhcCC--CcEEECCCCcHHHHHHHHHHcCCCEeEEEeC-CEEEEEEEHHHhhc
Confidence 4578899987 7899999999999999999999999999987 99999999999974
No 125
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.34 E-value=3.4e-06 Score=60.38 Aligned_cols=54 Identities=24% Similarity=0.509 Sum_probs=49.5
Q ss_pred cccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495 84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (237)
Q Consensus 84 ~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~ 139 (237)
++.++|.+ ++.++++++++.++++.|.+++.+.+||++++|++.|+++..|+.+
T Consensus 56 ~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~v~~~di~~ 109 (110)
T cd04605 56 SVEDIMTR--NVITATPDEPIDVAARKMERHNISALPVVDAENRVIGIITSEDISK 109 (110)
T ss_pred CHHHhcCC--CCeEECCCCcHHHHHHHHHHhCCCEEeEECCCCcEEEEEEHHHhhh
Confidence 48888877 7889999999999999999999999999998899999999999864
No 126
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.34 E-value=3.1e-06 Score=62.05 Aligned_cols=56 Identities=41% Similarity=0.723 Sum_probs=50.9
Q ss_pred cccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (237)
Q Consensus 82 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~ 139 (237)
..++.++|.+ .++++++++++.++++.|.+.+.+.+||+|++|+++|+||.+|+++
T Consensus 69 ~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~~ 124 (125)
T cd04631 69 NEPVRSIMTR--NVITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLLK 124 (125)
T ss_pred hcCHHHHhcC--CceEeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhhc
Confidence 3468888887 7999999999999999999999999999997799999999999975
No 127
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=98.34 E-value=4.8e-06 Score=59.42 Aligned_cols=56 Identities=38% Similarity=0.519 Sum_probs=49.2
Q ss_pred cccccccccccCceeEEcC-CCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495 82 VYTVGDFMTTKEELHVVKP-TTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (237)
Q Consensus 82 ~~~v~~im~~~~~~~~v~~-~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~ 139 (237)
..++.++|.. .+..+.. ++++.++++.|.+.+.+.+||+|++|+++|+||.+|+++
T Consensus 53 ~~~v~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil~ 109 (110)
T cd04601 53 DKPVSEVMTP--ENLLTTVEGTSLEEALELLHEHKIEKLPVVDDEGKLKGLITVKDIEK 109 (110)
T ss_pred CCCHHHhccc--CceEEecCCCCHHHHHHHHHHhCCCeeeEEcCCCCEEEEEEhhhhhc
Confidence 4578899976 5666666 999999999999999999999998899999999999974
No 128
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.34 E-value=1.5e-06 Score=62.75 Aligned_cols=55 Identities=27% Similarity=0.441 Sum_probs=50.7
Q ss_pred cccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHh
Q 026495 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138 (237)
Q Consensus 82 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~ 138 (237)
..++.++|.+ .+.++++++++.++++.|.+++.+.+||+|++|+++|+||.+|++
T Consensus 57 ~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~ 111 (113)
T cd04607 57 DDPVSEVMNR--NPITAKVGSSREEILALMRERSIRHLPILDEEGRVVGLATLDDLL 111 (113)
T ss_pred CCCHHHhhcC--CCEEEcCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEhHHhc
Confidence 3468899987 788999999999999999999999999999889999999999987
No 129
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=98.32 E-value=4.9e-06 Score=59.81 Aligned_cols=56 Identities=38% Similarity=0.595 Sum_probs=51.3
Q ss_pred cccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (237)
Q Consensus 82 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~ 139 (237)
..++.++|.+ .+.++++++++.++++.|.+++...+||++++|+++|+|+..||++
T Consensus 58 ~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~iG~it~~di~~ 113 (114)
T cd04604 58 TLPVADVMTR--NPKTIDPDALAAEALELMEENKITALPVVDDNGRPVGVLHIHDLLR 113 (114)
T ss_pred cCCHHHhhcc--CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEEEHHHhhc
Confidence 3478999988 7889999999999999999999999999998899999999999974
No 130
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.31 E-value=1.6e-06 Score=63.22 Aligned_cols=59 Identities=22% Similarity=0.418 Sum_probs=50.7
Q ss_pred CcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCC---CcEEEEEehHhHhh
Q 026495 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD---WKLVGLVSDYDLLA 139 (237)
Q Consensus 81 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~---~~~~Givt~~dl~~ 139 (237)
...+++++|.....++++++++++.+++++|.+++.+.+||+|++ |+++|+||.+||.+
T Consensus 56 ~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 56 QKVPVGVIMTRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK 117 (118)
T ss_pred cCCCHHHHhCCCCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence 355677888732258899999999999999999999999999976 69999999999874
No 131
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.31 E-value=5.6e-06 Score=59.45 Aligned_cols=56 Identities=43% Similarity=0.588 Sum_probs=50.8
Q ss_pred cccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (237)
Q Consensus 82 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~ 139 (237)
..++.++|.+ .+.++.+++++.++++.|.+.+.+.+||++++|+++|+++..|+++
T Consensus 57 ~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 112 (113)
T cd04622 57 TTTVGDVMTR--GVVTVTEDDDVDEAARLMREHQVRRLPVVDDDGRLVGIVSLGDLAR 112 (113)
T ss_pred cCCHHHhccC--CccEECCCCCHHHHHHHHHHcCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 3358899987 7899999999999999999999999999998799999999999974
No 132
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.29 E-value=1.4e-06 Score=63.49 Aligned_cols=52 Identities=33% Similarity=0.406 Sum_probs=48.0
Q ss_pred CccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495 177 KMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK 228 (237)
Q Consensus 177 ~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d 228 (237)
.++.++|.+++.++.+++++.++++.|.+.+...+||+|++|+++|+|+.+|
T Consensus 58 ~~v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~d 109 (113)
T cd04597 58 PRVRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLD 109 (113)
T ss_pred hhHHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHH
Confidence 4688999888999999999999999999999999999998899999999875
No 133
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=98.29 E-value=6.6e-06 Score=58.95 Aligned_cols=55 Identities=40% Similarity=0.569 Sum_probs=50.5
Q ss_pred cccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (237)
Q Consensus 82 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~ 139 (237)
..++.++|.. .++.+++++++.++++.|.+.+.+.+||+++ |+++|++|.+|+++
T Consensus 56 ~~~i~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Giit~~di~~ 110 (111)
T cd04800 56 DTPVSEVMTA--PPITIPPDATVFEALLLMLERGIHHLPVVDD-GRLVGVISATDLLR 110 (111)
T ss_pred cCCHHHHhCC--CCeEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhc
Confidence 4578899987 7999999999999999999999999999987 89999999999974
No 134
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.29 E-value=4.7e-06 Score=59.78 Aligned_cols=55 Identities=38% Similarity=0.597 Sum_probs=49.9
Q ss_pred cccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (237)
Q Consensus 82 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~ 139 (237)
..++.++|.+ .+.++.+++++.+++..|.+++...+||+++ |+++|+||..|++.
T Consensus 56 ~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~di~~ 110 (111)
T cd04626 56 EKKVFNIVSQ--DVFYVNEEDTIDEALDIMREKQIGRLPVVDD-NKLIGVVRTKDILD 110 (111)
T ss_pred cCcHHHHhcC--CcEEEcCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEhHHhcc
Confidence 3468888987 7889999999999999999999999999997 89999999999873
No 135
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.29 E-value=2.5e-06 Score=62.63 Aligned_cols=50 Identities=20% Similarity=0.337 Sum_probs=46.1
Q ss_pred ccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHh
Q 026495 87 DFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138 (237)
Q Consensus 87 ~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~ 138 (237)
++|.+ ++.++++++++.++++.|.+++.+.+||+|++|+++|+||.+|+.
T Consensus 72 ~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di~ 121 (123)
T cd04627 72 TIGTS--DVISINGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDVR 121 (123)
T ss_pred ccCcC--CceEeCCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHhh
Confidence 46766 788999999999999999999999999999889999999999986
No 136
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.28 E-value=1.5e-05 Score=72.29 Aligned_cols=57 Identities=32% Similarity=0.442 Sum_probs=53.3
Q ss_pred ccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhc
Q 026495 83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (237)
Q Consensus 83 ~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~ 141 (237)
.+++++|++ +++++++++++.++++.|.+++.+.+||+|++|+++|+||.+||++..
T Consensus 148 ~~V~diMt~--~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~ 204 (479)
T PRK07807 148 TQVRDVMST--DLVTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRAT 204 (479)
T ss_pred CCHHHhccC--CceEECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHh
Confidence 469999998 899999999999999999999999999999889999999999999753
No 137
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=98.28 E-value=4.4e-06 Score=59.98 Aligned_cols=56 Identities=34% Similarity=0.542 Sum_probs=51.5
Q ss_pred cccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcC-CCcEEEEEehHhHhh
Q 026495 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD-DWKLVGLVSDYDLLA 139 (237)
Q Consensus 82 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~-~~~~~Givt~~dl~~ 139 (237)
..++.++|.+ .+.++++++++.++++.|.+.+.+.+||+|+ +|+++|+++.+|+.+
T Consensus 57 ~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~ 113 (114)
T cd04613 57 LVVASDIMTK--PPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS 113 (114)
T ss_pred cEEHHHhccC--CCcEEcCCCCHHHHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence 3688999988 7999999999999999999999999999997 789999999999874
No 138
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.28 E-value=2.1e-06 Score=60.91 Aligned_cols=45 Identities=22% Similarity=0.370 Sum_probs=42.3
Q ss_pred eeEEcCCCCHHHHHHHHHHCCCCeEEEEcCC-CcEEEEEehHhHhh
Q 026495 95 LHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLA 139 (237)
Q Consensus 95 ~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~-~~~~Givt~~dl~~ 139 (237)
+.++.+++++.++++.|.+++.+++||+|++ |+++|++|.+|++.
T Consensus 52 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~ 97 (98)
T cd04618 52 LVSIHPERSLFDAALLLLKNKIHRLPVIDPSTGTGLYILTSRRILK 97 (98)
T ss_pred eEEeCCCCcHHHHHHHHHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence 6789999999999999999999999999987 89999999999974
No 139
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=98.27 E-value=4.6e-06 Score=74.85 Aligned_cols=105 Identities=15% Similarity=0.109 Sum_probs=72.2
Q ss_pred CCEEEEecCccchhHHH-hccCCCceEEecCCceeeeehhhh--cccCCCCC-cccccccccccCceeEEcCCCCHHHHH
Q 026495 33 LPCLLLSRPGCRVFSVL-ATSSDRVSALRRSSAVFASGTLTA--NSAAPSSG-VYTVGDFMTTKEELHVVKPTTTVDEAL 108 (237)
Q Consensus 33 v~~li~~~~~~~v~~~~-~~~~~~v~v~~~sp~~~~~~~~~~--~~~~~~~~-~~~v~~im~~~~~~~~v~~~~~l~~~~ 108 (237)
+-.+..+.+...+.+.+ ...++++|++.++..+....-... +....... .......+.+ ++.++++.++.+++
T Consensus 218 i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~~~~~~~~~~~---~~~Vpet~~~~~lL 294 (429)
T COG1253 218 IVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQSDLDLRVLVRP---PLFVPETLSLSDLL 294 (429)
T ss_pred EEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCccccchhhcccC---CeEecCCCcHHHHH
Confidence 33344444455555666 777899999996655533322222 11111111 1222223334 88999999999999
Q ss_pred HHHHHCCCCeEEEEcCCCcEEEEEehHhHhhh
Q 026495 109 EILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (237)
Q Consensus 109 ~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~ 140 (237)
+.|++.+.+.+.|+|+.|.+.|+||.+|+++.
T Consensus 295 ~~~r~~~~hmAiVvDEyG~~~GlVTleDIiEe 326 (429)
T COG1253 295 EEFREERTHMAIVVDEYGGVEGLVTLEDIIEE 326 (429)
T ss_pred HHHHHhCCeEEEEEEcCCCeEEEeEHHHHHHH
Confidence 99999999999999999999999999999974
No 140
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=98.27 E-value=2.5e-06 Score=62.00 Aligned_cols=56 Identities=39% Similarity=0.748 Sum_probs=51.3
Q ss_pred cccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (237)
Q Consensus 82 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~ 139 (237)
..++.++|.+ ++.++++++++.+++..|.+.+.+.+||++++|+++|+||..|+++
T Consensus 66 ~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~~ 121 (122)
T cd04585 66 KIKVSDIMTR--DPITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLFR 121 (122)
T ss_pred ccCHHHhccC--CCeEeCCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhhh
Confidence 4568889988 7999999999999999999999999999998799999999999975
No 141
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.26 E-value=5.2e-06 Score=60.48 Aligned_cols=56 Identities=38% Similarity=0.657 Sum_probs=50.7
Q ss_pred CcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (237)
Q Consensus 81 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~ 139 (237)
...++.++|.. ++.++++++++.+++..|.+.+.+.+||+|+ |+++|+++.+|+++
T Consensus 65 ~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvi~~~dl~~ 120 (121)
T cd04633 65 RNLPVSDIMTR--PVITIEPDTSVSDVASLMLENNIGGLPVVDD-GKLVGIVTRTDILR 120 (121)
T ss_pred hccCHHHHccC--CceEECCCCcHHHHHHHHHHcCCCcccEEEC-CEEEEEEEHHHhhc
Confidence 34578888987 7899999999999999999999999999997 99999999999974
No 142
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.26 E-value=3e-06 Score=60.97 Aligned_cols=57 Identities=23% Similarity=0.410 Sum_probs=51.6
Q ss_pred CcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (237)
Q Consensus 81 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~ 139 (237)
...++.++|.+ ++.++..++++.++++.|.+++...+||+|++|+++|+++..|+.+
T Consensus 56 ~~~~i~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~~ 112 (113)
T cd04615 56 KDAKVREVMNS--PVITIDANDSIAKARWLMSNNNISRLPVLDDKGKVGGIVTEDDILR 112 (113)
T ss_pred cCCcHHHhccC--CceEECCCCcHHHHHHHHHHcCCCeeeEECCCCeEEEEEEHHHhhc
Confidence 44578899987 7899999999999999999999999999998899999999999874
No 143
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.25 E-value=3.2e-06 Score=61.73 Aligned_cols=46 Identities=20% Similarity=0.478 Sum_probs=43.2
Q ss_pred ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (237)
Q Consensus 94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~ 139 (237)
++.++++++++.++++.|.+++.+.+||+|++|+++|+||.+|+++
T Consensus 74 ~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~~~Givt~~di~~ 119 (120)
T cd04641 74 GVRTCSPDDCLRTIFDLIVKARVHRLVVVDENKRVEGIISLSDILQ 119 (120)
T ss_pred CCeEEcCCCcHHHHHHHHHhcCccEEEEECCCCCEEEEEEHHHhhc
Confidence 5789999999999999999999999999998899999999999874
No 144
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.25 E-value=3.1e-06 Score=60.65 Aligned_cols=56 Identities=23% Similarity=0.442 Sum_probs=51.5
Q ss_pred cccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (237)
Q Consensus 82 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~ 139 (237)
..+++++|.+ ++..+.+++++.++++.|.+.+...+||+|++|+++|+||..|+++
T Consensus 52 ~~~v~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dll~ 107 (109)
T cd04606 52 DTPVSDIMDT--DVISVSADDDQEEVARLFEKYDLLALPVVDEEGRLVGIITVDDVID 107 (109)
T ss_pred cchHHHHhCC--CCeEEcCCCCHHHHHHHHHHcCCceeeeECCCCcEEEEEEhHHhhh
Confidence 4578899987 7899999999999999999999999999998899999999999985
No 145
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.24 E-value=9.2e-06 Score=59.86 Aligned_cols=51 Identities=22% Similarity=0.420 Sum_probs=46.1
Q ss_pred ccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495 87 DFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (237)
Q Consensus 87 ~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~ 139 (237)
+.|.. ++.++++++++.++++.|.+++.+.+||+|++|+++|+||..|+++
T Consensus 75 ~~~~~--~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~~dil~ 125 (126)
T cd04642 75 GVKSR--PLITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDIIS 125 (126)
T ss_pred ccccC--CCeEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEHHHHhc
Confidence 45555 6889999999999999999999999999998899999999999974
No 146
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=98.23 E-value=7.3e-06 Score=58.72 Aligned_cols=54 Identities=26% Similarity=0.293 Sum_probs=47.6
Q ss_pred ccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495 83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (237)
Q Consensus 83 ~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~ 139 (237)
..+.++|. ++.++.+++++.++++.|.+++.+.+||+|++|+++|++|.+|+.+
T Consensus 57 ~~~~~~~~---~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~ 110 (111)
T cd04590 57 LDLRDLLR---PPLFVPESTPLDDLLEEMRKERSHMAIVVDEYGGTAGLVTLEDILE 110 (111)
T ss_pred CCHHHHhc---CCeecCCCCcHHHHHHHHHhcCCcEEEEEECCCCEEEEeEHHHhhc
Confidence 35666664 4788999999999999999999999999998899999999999873
No 147
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.23 E-value=3.4e-06 Score=60.57 Aligned_cols=55 Identities=31% Similarity=0.462 Sum_probs=49.9
Q ss_pred cccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (237)
Q Consensus 82 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~ 139 (237)
..++.++|.. .+.++.+++++.++++.|.+++...+||++ +|+++|++|.+|+++
T Consensus 57 ~~~v~~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~-~~~~~Gvvt~~dl~~ 111 (112)
T cd04625 57 DTTVRAIMNP--EPIVASPDDSIDEVRRLMVERHLRYLPVLD-GGTLLGVISFHDVAK 111 (112)
T ss_pred cCCHHHHhCC--CCeEECCCCCHHHHHHHHHHcCCCeeeEEE-CCEEEEEEEHHHhhc
Confidence 3578899987 788999999999999999999999999998 589999999999974
No 148
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.22 E-value=7.4e-06 Score=59.09 Aligned_cols=54 Identities=28% Similarity=0.538 Sum_probs=47.9
Q ss_pred cccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (237)
Q Consensus 82 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~ 139 (237)
..+++++|.+ .+.++.+++++.++++.|.+.+ .+||+|++|+++|++|.+|+++
T Consensus 62 ~~~v~~~~~~--~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~~~~~~~Gvit~~dil~ 115 (116)
T cd04643 62 DLKVIDVMNT--DVPVIIDDADIEEILHLLIDQP--FLPVVDDDGIFIGIITRREILK 115 (116)
T ss_pred CCcHHHHhcC--CCceecCCCCHHHHHHHHhcCC--ceeEEeCCCeEEEEEEHHHhhc
Confidence 4578899988 7999999999999999998754 5899998899999999999974
No 149
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=98.22 E-value=4.1e-06 Score=71.85 Aligned_cols=109 Identities=16% Similarity=0.156 Sum_probs=79.6
Q ss_pred ccCCEEEEecCccchhHHH-hccCCCceEEecCCce-eeeehhhh-cccCCCCCcccccccccccCceeEEcCCCCHHHH
Q 026495 31 LQLPCLLLSRPGCRVFSVL-ATSSDRVSALRRSSAV-FASGTLTA-NSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEA 107 (237)
Q Consensus 31 ~~v~~li~~~~~~~v~~~~-~~~~~~v~v~~~sp~~-~~~~~~~~-~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~ 107 (237)
..+..+.+..+...+.+.+ ..++.++|+++++..+ .+....-. ++......+.+-.++++-.+++.++++++++.+-
T Consensus 210 ~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~~~k~d~~~~a~epyFVPe~Tpl~~Q 289 (423)
T COG4536 210 NEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNEFTKEDILRAADEPYFVPEGTPLSDQ 289 (423)
T ss_pred cceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccCcccHhHHHHHhcCCeecCCCCcHHHH
Confidence 4455566666666777777 8889999999988766 32222221 1111222224445566443468899999999999
Q ss_pred HHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495 108 LEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (237)
Q Consensus 108 ~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~ 139 (237)
+..|++++.+...|||+.|.+.|+||.+|+++
T Consensus 290 L~~F~~~k~hialVVDEYG~i~GLVTLEDIlE 321 (423)
T COG4536 290 LVAFQRNKKHIALVVDEYGDIQGLVTLEDILE 321 (423)
T ss_pred HHHHHHhcceEEEEEeccCcEEeeeeHHHHHH
Confidence 99999999999999999999999999999996
No 150
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=98.22 E-value=1.1e-05 Score=57.94 Aligned_cols=56 Identities=29% Similarity=0.388 Sum_probs=50.6
Q ss_pred CcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (237)
Q Consensus 81 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~ 139 (237)
...++.++|.+ ++..+++++++.++++.|.+++...+||+|+ |+++|++|..|+.+
T Consensus 55 ~~~~i~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~dl~~ 110 (111)
T cd04589 55 SSTPVGEIATF--PLITVDPDDFLFNALLLMTRHRIHRVVVREG-GEVVGVLEQTDLLS 110 (111)
T ss_pred CCCCHHHHhCC--CcEEECCCCcHHHHHHHHHHhCccEEEEeeC-CEEEEEEEhHHhhc
Confidence 34578899987 7899999999999999999999999999985 89999999999975
No 151
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.22 E-value=3.5e-06 Score=61.50 Aligned_cols=57 Identities=32% Similarity=0.538 Sum_probs=51.4
Q ss_pred CcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (237)
Q Consensus 81 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~ 139 (237)
...++.++|.+ ++..++.++++.++++.|.+.+.+.+||+|++|++.|++|.+|+++
T Consensus 65 ~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~~ 121 (122)
T cd04635 65 ASPTVEKIMST--PVYSVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVLK 121 (122)
T ss_pred ccCcHHHHhcC--CCeeECCCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhhc
Confidence 35567888887 7899999999999999999999999999998899999999999974
No 152
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=98.21 E-value=3.3e-06 Score=60.68 Aligned_cols=55 Identities=29% Similarity=0.379 Sum_probs=50.6
Q ss_pred ccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495 83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (237)
Q Consensus 83 ~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~ 139 (237)
.++.++|.+ .+.++++++++.++++.|.+++...+||++++|+++|+|+..|++.
T Consensus 58 ~~v~~i~~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~~ 112 (113)
T cd04587 58 TLVERVMTP--NPVCATSDTPVLEALHLMVQGKFRHLPVVDKSGQVVGLLDVTKLTH 112 (113)
T ss_pred CCHHHhcCC--CCeEEcCCCCHHHHHHHHHHcCCCcccEECCCCCEEEEEEHHHhcc
Confidence 578899987 7889999999999999999999999999998899999999999873
No 153
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=98.21 E-value=3.9e-06 Score=60.67 Aligned_cols=55 Identities=24% Similarity=0.452 Sum_probs=50.0
Q ss_pred ccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCC--CcEEEEEehHhHhh
Q 026495 83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD--WKLVGLVSDYDLLA 139 (237)
Q Consensus 83 ~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~--~~~~Givt~~dl~~ 139 (237)
.++.++|.. .++++.+++++.++++.|.+++...+||+|++ |+++|+||.+|+.+
T Consensus 58 ~~~~~~~~~--~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~ 114 (115)
T cd04593 58 SAVDEVATP--PLLTVHPDEPLAHALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLL 114 (115)
T ss_pred ccHHHhccC--CceEECCCCCHHHHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhc
Confidence 347788887 79999999999999999999999999999977 79999999999974
No 154
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=98.20 E-value=5.2e-06 Score=58.98 Aligned_cols=54 Identities=19% Similarity=0.274 Sum_probs=49.3
Q ss_pred cccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495 84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (237)
Q Consensus 84 ~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~ 139 (237)
+++++|.+ .+..+.+++++.++++.|.+++...+||+|++|+++|+++.+++.+
T Consensus 52 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~~ 105 (106)
T cd04582 52 CCGDHAEP--FKVTVSVDDDLRIVLSRMFAHDMSWLPCVDEDGRYVGEVTQRSIAD 105 (106)
T ss_pred chhhhccc--CCEEECCCCCHHHHHHHHHHCCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 47788987 6788999999999999999999999999998899999999999874
No 155
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.20 E-value=1.5e-05 Score=56.35 Aligned_cols=54 Identities=31% Similarity=0.503 Sum_probs=49.6
Q ss_pred cccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHh
Q 026495 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138 (237)
Q Consensus 82 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~ 138 (237)
..++.++|.+ .+.++++++++.++++.|.+++...+||+|+ |++.|++|.+|++
T Consensus 50 ~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~~l~ 103 (105)
T cd04599 50 NRLVADAMTR--EVVTISPEASLLEAKRLMEEKKIERLPVLRE-RKLVGIITKGTIA 103 (105)
T ss_pred cCCHHHHccC--CCEEECCCCCHHHHHHHHHHcCCCEeeEEEC-CEEEEEEEHHHhc
Confidence 3468889988 7999999999999999999999999999997 9999999999987
No 156
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.20 E-value=1.2e-05 Score=57.67 Aligned_cols=56 Identities=32% Similarity=0.447 Sum_probs=50.6
Q ss_pred cccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (237)
Q Consensus 82 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~ 139 (237)
..++.++|.+ +++.+..++++.++++.|.+++...+||++++|++.|++|.+|+++
T Consensus 56 ~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~~ 111 (112)
T cd04624 56 DTPVSEIMTR--DLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKGGELVGVISIRDLVR 111 (112)
T ss_pred ccCHHHhccC--CCEEECCCCcHHHHHHHHHHcCccEEEEEcCCCcEEEEEEHHHhcc
Confidence 3468889987 7899999999999999999999999999998899999999999874
No 157
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=98.19 E-value=1.4e-05 Score=57.09 Aligned_cols=54 Identities=43% Similarity=0.654 Sum_probs=49.7
Q ss_pred cccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495 84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (237)
Q Consensus 84 ~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~ 139 (237)
++.++|.+ ++.++.+++++.++++.|.+++.+.+||+|++|++.|++|..|+.+
T Consensus 57 ~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 110 (111)
T cd04612 57 LVGDVMTR--DPVTASPDETLRDALKRMAERDIGRLPVVDDSGRLVGIVSRSDLLR 110 (111)
T ss_pred CHHHhccC--CCeEECCCCCHHHHHHHHHhCCCCeeeEEcCCCCEEEEEEHHHhhh
Confidence 57788887 7999999999999999999999999999998899999999999874
No 158
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.19 E-value=1.2e-05 Score=57.70 Aligned_cols=56 Identities=34% Similarity=0.665 Sum_probs=50.1
Q ss_pred CcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (237)
Q Consensus 81 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~ 139 (237)
...++.++|.+ ++.++.+++++.++++.|.+.+...+||+|++ +++|+|+.+|+.+
T Consensus 56 ~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-~~~Gvi~~~di~~ 111 (112)
T cd04802 56 REVPVGEVMST--PLITIDPNASLNEAAKLMAKHGIKRLPVVDDD-ELVGIVTTTDIVM 111 (112)
T ss_pred ccCCHHHhcCC--CcEEECCCCCHHHHHHHHHHcCCCeeEEeeCC-EEEEEEEhhhhhc
Confidence 45578899987 78899999999999999999999999999865 9999999999873
No 159
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=98.18 E-value=4.2e-06 Score=60.53 Aligned_cols=55 Identities=35% Similarity=0.455 Sum_probs=48.7
Q ss_pred ccccccccccCceeEEcC--CCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495 83 YTVGDFMTTKEELHVVKP--TTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (237)
Q Consensus 83 ~~v~~im~~~~~~~~v~~--~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~ 139 (237)
.+++++|.. ....+.. ++++.++++.|.+++...+||+|++|+++|+||.+|+.+
T Consensus 57 ~~v~~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~~ 113 (114)
T cd04602 57 TPLSEVMTP--REVLVVAPTGITLEEANEILRESKKGKLPIVNDDGELVALVTRSDLKK 113 (114)
T ss_pred CCHHHhcCC--CceEEECCCCCCHHHHHHHHHhcCCCceeEECCCCeEEEEEEHHHhhc
Confidence 468899987 5666755 999999999999999999999998899999999999874
No 160
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.17 E-value=6e-06 Score=62.00 Aligned_cols=55 Identities=31% Similarity=0.583 Sum_probs=50.4
Q ss_pred cccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (237)
Q Consensus 82 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~ 139 (237)
..+++++|.+ ++..+.+++++.++++.|.+++.+.+||+++ |+++|+||.+|+++
T Consensus 80 ~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~Gvit~~di~~ 134 (135)
T cd04621 80 PLVAEDIMTE--EIITVSPNDDVVDAAKLMLEANISGLPVVDN-DNIVGVITKTDICR 134 (135)
T ss_pred cccHHHhcCC--CCeEECCCCCHHHHHHHHHHcCCCEEEEEeC-CEEEEEEEHHHHhh
Confidence 4578999987 7889999999999999999999999999986 89999999999874
No 161
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.14 E-value=3.8e-06 Score=61.99 Aligned_cols=57 Identities=23% Similarity=0.333 Sum_probs=47.5
Q ss_pred CcccccccccccCceeE--E----cCCCCHHHHHHHHHHCCCCeEEEEcCC-CcEEEEEehHhHhh
Q 026495 81 GVYTVGDFMTTKEELHV--V----KPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLA 139 (237)
Q Consensus 81 ~~~~v~~im~~~~~~~~--v----~~~~~l~~~~~~~~~~~~~~~pVvd~~-~~~~Givt~~dl~~ 139 (237)
...+++++|.+ .... + .+++++.++++.|.+++.+.+||+|++ |+++|+||.+|+++
T Consensus 62 ~~~~v~~im~~--~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~ 125 (126)
T cd04640 62 SELTVADVMTP--KEDLKALDLEELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIAR 125 (126)
T ss_pred hheEHHHhcCc--hhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence 35678899986 4433 3 268899999999999999999999986 79999999999974
No 162
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.14 E-value=4.4e-06 Score=62.37 Aligned_cols=55 Identities=38% Similarity=0.498 Sum_probs=50.6
Q ss_pred cccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (237)
Q Consensus 82 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~ 139 (237)
..++.++|.+ ++..+.+++++.+++..|.+.+.+.+||+| +|+++|++|.+|+.+
T Consensus 80 ~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~g~~~Gvit~~di~~ 134 (135)
T cd04586 80 GRKVADVMTR--PVVTVGEDTPLAEVAELMEEHRIKRVPVVR-GGRLVGIVSRADLLR 134 (135)
T ss_pred CCCHHHHhCC--CceEeCCCCcHHHHHHHHHHcCCCccCEec-CCEEEEEEEhHhhhc
Confidence 4578899987 789999999999999999999999999999 799999999999874
No 163
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=98.14 E-value=7.6e-05 Score=67.63 Aligned_cols=57 Identities=25% Similarity=0.335 Sum_probs=53.4
Q ss_pred ccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhc
Q 026495 83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (237)
Q Consensus 83 ~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~ 141 (237)
.+++++|++ +++++++++++.+++++|.+++.+.+||+|++|+++|+||.+||++..
T Consensus 146 ~~V~dIMt~--~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~ 202 (475)
T TIGR01303 146 TQVRDIMST--DLVTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRAT 202 (475)
T ss_pred CCHHHHccC--CceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHH
Confidence 579999998 899999999999999999999999999999889999999999999753
No 164
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=98.14 E-value=1.4e-05 Score=69.03 Aligned_cols=57 Identities=28% Similarity=0.336 Sum_probs=52.2
Q ss_pred CcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhh
Q 026495 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (237)
Q Consensus 81 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~ 140 (237)
...+++++|.+ ++.++.+++++.++++.|.+++.+.+||++ +|+++|+||..|+++.
T Consensus 267 ~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~-~~~lvGiit~~dil~~ 323 (326)
T PRK10892 267 RQASIADVMTP--GGIRVRPGILAVDALNLMQSRHITSVLVAD-GDHLLGVLHMHDLLRA 323 (326)
T ss_pred ccCCHHHhcCC--CCEEECCCCCHHHHHHHHHHCCCcEEEEee-CCEEEEEEEhHHhHhc
Confidence 35689999998 899999999999999999999999999998 5899999999999863
No 165
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.13 E-value=5.1e-06 Score=59.79 Aligned_cols=55 Identities=38% Similarity=0.607 Sum_probs=50.2
Q ss_pred cccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (237)
Q Consensus 82 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~ 139 (237)
..++.++|.+ .+.++.+++++.++++.|.+++.+.+||+|+ |+++|++|.+|+.+
T Consensus 59 ~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~ 113 (114)
T cd04629 59 VATVRDIMTT--EVLTVSPDDSIVDLAQLMLKAKPKRYPVVDD-GKLVGQISRRDVLR 113 (114)
T ss_pred CccHHHHhcc--CceEECCCCcHHHHHHHHHHhCCCccCEEEC-CEEEEEEEHHHHhc
Confidence 4578899987 7889999999999999999999999999997 89999999999974
No 166
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.12 E-value=5.8e-06 Score=61.46 Aligned_cols=53 Identities=36% Similarity=0.605 Sum_probs=49.2
Q ss_pred cccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495 84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (237)
Q Consensus 84 ~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~ 139 (237)
++.++|.+ ++..+.+++++.+++..|.+.+.+.+||+|+ |+++|++|..|+++
T Consensus 79 ~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~iGvit~~dl~~ 131 (132)
T cd04636 79 KVEEIMTK--KVITVDEDTTIEDVARIMSKKNIKRLPVVDD-GKLVGIISRGDIIR 131 (132)
T ss_pred CHHHhccC--CceEECCCCcHHHHHHHHHHCCCCeeEEEEC-CEEEEEEEHHHhhc
Confidence 78888987 7899999999999999999999999999997 99999999999974
No 167
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=98.12 E-value=3.2e-06 Score=62.49 Aligned_cols=58 Identities=21% Similarity=0.216 Sum_probs=49.5
Q ss_pred CcccccccccccCceeEEcCCCCHHHHHHHHH---------HCCCCeEEEEcCCCcEEEEEehHhHhhh
Q 026495 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILV---------EKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (237)
Q Consensus 81 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~---------~~~~~~~pVvd~~~~~~Givt~~dl~~~ 140 (237)
...+++++|.+ ++.++.+++++.++.+++. +.+.+.+||++++|+++|+||.+|++++
T Consensus 57 ~~~~v~~im~~--~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~~Dl~~~ 123 (124)
T cd04608 57 PSDPVSKALYK--QFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKIDLLSY 123 (124)
T ss_pred CCCcHHHHhhc--cceecCCCCCHHHHHhhcccCCceEEEeccccccccccccccceEEEEehhHhhhh
Confidence 45689999998 8999999999999999653 3356788899888999999999999863
No 168
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.10 E-value=1e-05 Score=56.98 Aligned_cols=45 Identities=36% Similarity=0.540 Sum_probs=42.4
Q ss_pred eeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495 95 LHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (237)
Q Consensus 95 ~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~ 139 (237)
+.++.+++++.++++.|.+++.+.+||+|++|+++|++|.+|+.+
T Consensus 51 ~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~~~~Giit~~di~~ 95 (96)
T cd04614 51 VVTATKRTTVSECAQKMKRNRIEQIPIINGNDKLIGLLRDHDLLK 95 (96)
T ss_pred cEEecCCCCHHHHHHHHHHhCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 778999999999999999999999999998799999999999974
No 169
>COG0517 FOG: CBS domain [General function prediction only]
Probab=98.09 E-value=2.6e-05 Score=56.20 Aligned_cols=87 Identities=30% Similarity=0.439 Sum_probs=63.4
Q ss_pred hccCCCceEEecC-CceeeeehhhhcccCCCCCcc-cccccccccCceeEEcCCCCHHHHHHHHHH-CCCCeEEEEcCCC
Q 026495 50 ATSSDRVSALRRS-SAVFASGTLTANSAAPSSGVY-TVGDFMTTKEELHVVKPTTTVDEALEILVE-KRITGFPVIDDDW 126 (237)
Q Consensus 50 ~~~~~~v~v~~~s-p~~~~~~~~~~~~~~~~~~~~-~v~~im~~~~~~~~v~~~~~l~~~~~~~~~-~~~~~~pVvd~~~ 126 (237)
......+++..+. .....+.+.+........... ++.++|.. .+.++.++.++.++.+.|.+ .+.+.+||+++++
T Consensus 27 ~~~~~~~~v~~~~~l~Giit~~di~~~~~~~~~~~~~v~~v~~~--~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~~ 104 (117)
T COG0517 27 ENGVSAVPVVDDGKLVGIITERDILRALAAGGKRLLPVKEVMTK--PVVTVDPDTPLEEALELMVERHKIRRLPVVDDDG 104 (117)
T ss_pred HcCCCEEEEeeCCEEEEEEEHHHHHHHHhccCCccccHHHhccC--CcEEECCCCCHHHHHHHHHHHcCcCeEEEEECCC
Confidence 4445566776643 333444444443222222222 68999997 78999999999999999999 7999999999886
Q ss_pred -cEEEEEehHhHh
Q 026495 127 -KLVGLVSDYDLL 138 (237)
Q Consensus 127 -~~~Givt~~dl~ 138 (237)
+++|++|..|+.
T Consensus 105 ~~lvGivt~~di~ 117 (117)
T COG0517 105 GKLVGIITLSDIL 117 (117)
T ss_pred CeEEEEEEHHHcC
Confidence 999999999973
No 170
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.09 E-value=8.8e-06 Score=59.39 Aligned_cols=55 Identities=36% Similarity=0.582 Sum_probs=50.4
Q ss_pred ccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495 83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (237)
Q Consensus 83 ~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~ 139 (237)
.++.++|.. .++++++++++.++++.|.+++...+||+|++|+++|+++..|+++
T Consensus 67 ~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll~ 121 (122)
T cd04637 67 RRAHQIMTR--DPITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLLK 121 (122)
T ss_pred hHHHHhhcC--CCeeeCCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhhh
Confidence 467888987 7999999999999999999999999999998899999999999975
No 171
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=98.09 E-value=1.3e-05 Score=70.63 Aligned_cols=116 Identities=22% Similarity=0.326 Sum_probs=90.4
Q ss_pred eeEEcCCCCHHHHHHHHHHCCCCeEEEEc-CCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHh
Q 026495 95 LHVVKPTTTVDEALEILVEKRITGFPVID-DDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (237)
Q Consensus 95 ~~~v~~~~~l~~~~~~~~~~~~~~~pVvd-~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (237)
+..+.+..++.++...+.+++++++||.| +.+.+..++|.+-+++++........ +..++
T Consensus 164 ~~~i~p~~s~l~~~~~l~~~~~~rvpv~d~~~~~v~~ilt~~rIl~~l~~~~~~~~-----------------~~~~l-- 224 (381)
T KOG1764|consen 164 FVSISPESSLLDAVLLLIKSRIHRVPVIDPETGEVLYILTQRRILKFLWLNGRLLP-----------------LPSLL-- 224 (381)
T ss_pred ceeecCcHHHHHHHHHHHhCCccceeeecccccceeeehhHHHHHHHHHHhhcccc-----------------cHHHh--
Confidence 48899999999999999999999999999 45899999999999986533222111 00111
Q ss_pred hcCCccccc---cccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEcccCCC
Q 026495 174 TNGKMVGDL---MTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSKGGS 231 (237)
Q Consensus 174 ~~~~~v~~i---m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d~~~ 231 (237)
..++.++ ...+...+.+++++.+|++.|.+.++..+|||++.|+.+|++++.|+..
T Consensus 225 --~~s~~dl~ig~~~~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g~~v~~~s~~Dv~~ 283 (381)
T KOG1764|consen 225 --SKSLSDLGIGTWSNIASISEDTPVIEALKIMSERRISALPVVDENGKKVGNYSRFDVIH 283 (381)
T ss_pred --hCCHHHhCcchhhhheeecCCCcHHHHHHHHHhcCcCcceEEcCCCceecceehhhhhh
Confidence 2233332 1235788999999999999999999999999999999999999999753
No 172
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=98.08 E-value=1.5e-05 Score=47.56 Aligned_cols=46 Identities=41% Similarity=0.710 Sum_probs=41.8
Q ss_pred eeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhh
Q 026495 95 LHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (237)
Q Consensus 95 ~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~ 140 (237)
+.++.+++++.++.+.|.+.+.+.+||++++++++|+++..++.+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~~ 47 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKA 47 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHHh
Confidence 5678999999999999999999999999988999999999999753
No 173
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=98.07 E-value=2.5e-05 Score=56.69 Aligned_cols=56 Identities=38% Similarity=0.595 Sum_probs=50.6
Q ss_pred CcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (237)
Q Consensus 81 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~ 139 (237)
...++.++|.+ .+.++..++++.++++.|.+.+...+||+++ |+++|+++.+|+++
T Consensus 65 ~~~~v~~~~~~--~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~~Gvv~~~di~~ 120 (121)
T cd04584 65 LKMPVKEIMTK--DVITVHPLDTVEEAALLMREHRIGCLPVVED-GRLVGIITETDLLR 120 (121)
T ss_pred cCcCHHHHhhC--CCeEECCCCcHHHHHHHHHHcCCCeEEEeeC-CEEEEEEEHHHhhc
Confidence 34678889988 7899999999999999999999999999986 89999999999874
No 174
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=98.07 E-value=1.1e-05 Score=57.35 Aligned_cols=53 Identities=30% Similarity=0.492 Sum_probs=48.2
Q ss_pred cccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495 84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (237)
Q Consensus 84 ~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~ 139 (237)
++.++|.+ ...+++++.++.+++..|.+++...+||+| +|+++|++|.+|+.+
T Consensus 51 ~~~~~~~~--~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~-~~~~iGvit~~dl~~ 103 (104)
T cd04594 51 DVVDYIVR--GIPYVRLTSTAEEAWEVMMKNKTRWCPVVD-DGKFKGIVTLDSILD 103 (104)
T ss_pred chhhhhhc--CCcEEcCCCCHHHHHHHHHHcCcceEEEEE-CCEEEEEEEHHHhhc
Confidence 57778887 788999999999999999999999999998 589999999999874
No 175
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=98.07 E-value=6.7e-06 Score=62.46 Aligned_cols=67 Identities=15% Similarity=0.214 Sum_probs=54.1
Q ss_pred hhhHHHHHHHHHhhc--CCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495 161 WKTFNEVQKLLSKTN--GKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK 228 (237)
Q Consensus 161 ~~~~~~~~~~~~~~~--~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d 228 (237)
..+++.+...+.+.. ......+|..++..+.+++++.+++++|.++|++.+||+++ |+++|-||.+|
T Consensus 47 lSt~k~Il~aL~e~e~~~ita~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~-~k~VGsItE~~ 115 (187)
T COG3620 47 LSTVKRILEALEEAEKTRITAKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEE-DKVVGSITEND 115 (187)
T ss_pred HHHHHHHHHHHHHhhcceEeHhhhccCCeeEECchhhHHHHHHHHHHcCCccCceeeC-CeeeeeecHHH
Confidence 445555555554332 24567899999999999999999999999999999999994 99999998764
No 176
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=98.06 E-value=2.4e-05 Score=72.82 Aligned_cols=57 Identities=25% Similarity=0.387 Sum_probs=51.9
Q ss_pred cccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCC--CcEEEEEehHhHhhh
Q 026495 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD--WKLVGLVSDYDLLAL 140 (237)
Q Consensus 82 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~--~~~~Givt~~dl~~~ 140 (237)
..+++++|.+ ++.++++++++.++++.|.+++.+.+||+|++ ++++|+||.+|+.+.
T Consensus 511 ~~~v~dim~~--~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~ 569 (574)
T PRK01862 511 DKTAADYAHT--PFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDA 569 (574)
T ss_pred cchHHHhccC--CCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHH
Confidence 4578999988 78999999999999999999999999999876 489999999999974
No 177
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=98.05 E-value=1.2e-05 Score=73.39 Aligned_cols=63 Identities=21% Similarity=0.373 Sum_probs=55.8
Q ss_pred CcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccc
Q 026495 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143 (237)
Q Consensus 81 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~ 143 (237)
...+|.++|++...++++++++++.++++.|.+++...+||+|++++++|+||.+||.+....
T Consensus 161 ~~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~~ 223 (505)
T PLN02274 161 RETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKGY 223 (505)
T ss_pred cCCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhhC
Confidence 356899999973238899999999999999999999999999988999999999999986543
No 178
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=98.03 E-value=0.00012 Score=66.84 Aligned_cols=61 Identities=34% Similarity=0.447 Sum_probs=55.0
Q ss_pred CcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhc
Q 026495 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (237)
Q Consensus 81 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~ 141 (237)
...+++++|++.+++++++++.++.+++++|.+++...+||+|++++++|+||.+||++..
T Consensus 157 ~~~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~ 217 (495)
T PTZ00314 157 KSTPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNR 217 (495)
T ss_pred CCCCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhcc
Confidence 3567999998644688999999999999999999999999999999999999999999753
No 179
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=98.01 E-value=3e-05 Score=70.01 Aligned_cols=93 Identities=24% Similarity=0.348 Sum_probs=68.0
Q ss_pred chhHHH-hccCCCceEEecCC----ce-eeeehhhhcccCCCCCccccccccc-ccCceeEEcCCCCHHHHHHHHHHCCC
Q 026495 44 RVFSVL-ATSSDRVSALRRSS----AV-FASGTLTANSAAPSSGVYTVGDFMT-TKEELHVVKPTTTVDEALEILVEKRI 116 (237)
Q Consensus 44 ~v~~~~-~~~~~~v~v~~~sp----~~-~~~~~~~~~~~~~~~~~~~v~~im~-~~~~~~~v~~~~~l~~~~~~~~~~~~ 116 (237)
++.+.+ ......+|+..+.. .. ....+.+.. . .....+++++|+ . +++++++++++.++++.|.+++.
T Consensus 101 eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~--~-~~~~~~V~dvm~~~--~~~~V~~~~sl~eal~~m~~~~~ 175 (450)
T TIGR01302 101 DVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRF--V-KDKGKPVSEVMTRE--EVITVPEGIDLEEALKVLHEHRI 175 (450)
T ss_pred HHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhh--h-hcCCCCHHHhhCCC--CCEEECCCCcHHHHHHHHHHcCC
Confidence 333334 44566778887542 11 222222221 1 123557899998 4 68999999999999999999999
Q ss_pred CeEEEEcCCCcEEEEEehHhHhhhc
Q 026495 117 TGFPVIDDDWKLVGLVSDYDLLALD 141 (237)
Q Consensus 117 ~~~pVvd~~~~~~Givt~~dl~~~~ 141 (237)
+.+||+|++|++.|+||.+||++..
T Consensus 176 ~~lpVVDe~G~lvGiVT~~DIl~~~ 200 (450)
T TIGR01302 176 EKLPVVDKNGELVGLITMKDIVKRR 200 (450)
T ss_pred CeEEEEcCCCcEEEEEEhHHhhhcc
Confidence 9999999999999999999999864
No 180
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=98.01 E-value=3.2e-05 Score=54.99 Aligned_cols=54 Identities=30% Similarity=0.416 Sum_probs=46.1
Q ss_pred cccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (237)
Q Consensus 82 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~ 139 (237)
..++.++|.+ .+.++++++++.++.+.|.+ .. .+||++++|+++|+||.+|+.+
T Consensus 56 ~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~-~~-~~~vv~~~~~~~Gvvt~~di~~ 109 (110)
T cd04609 56 SLPVREVMGE--PLPTVDPDAPIEELSELLDR-GN-VAVVVDEGGKFVGIITRADLLK 109 (110)
T ss_pred CcCHHHHhcC--CCceeCCCCcHHHHHHHHHh-CC-ceeEEecCCeEEEEEeHHHhhc
Confidence 3568888987 78899999999999999988 33 4788988899999999999974
No 181
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=97.97 E-value=5.6e-05 Score=53.41 Aligned_cols=53 Identities=43% Similarity=0.771 Sum_probs=48.3
Q ss_pred ccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495 85 VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (237)
Q Consensus 85 v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~ 139 (237)
+.++|.. +...+++++++.++++.|.+.+...+||+|++|++.|+++..|+.+
T Consensus 60 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 112 (113)
T cd02205 60 VGDVMTR--DVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGRLVGIVTRSDILR 112 (113)
T ss_pred HHHHhcC--CceecCCCcCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHhhc
Confidence 5677877 7889999999999999999999999999998899999999999874
No 182
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.97 E-value=4.8e-05 Score=57.50 Aligned_cols=55 Identities=31% Similarity=0.642 Sum_probs=49.7
Q ss_pred cccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (237)
Q Consensus 82 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~ 139 (237)
..++.++|.+ .+.+++.++++.+++..|.+.+.+.+||+++ |+++|+++.+|+++
T Consensus 88 ~~~v~~~~~~--~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-~~~~Gvvt~~dl~~ 142 (143)
T cd04634 88 KMKVRDIMTK--KVITISPDASIEDAAELMVRHKIKRLPVVED-GRLVGIVTRGDIIE 142 (143)
T ss_pred cCCHHHHcCC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence 4567888887 7999999999999999999999999999997 89999999999873
No 183
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=97.97 E-value=2e-05 Score=71.00 Aligned_cols=61 Identities=26% Similarity=0.348 Sum_probs=55.9
Q ss_pred CCCCcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhc
Q 026495 78 PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (237)
Q Consensus 78 ~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~ 141 (237)
......+|+++|+. ++.+++.++.+.||+-.|.+++++++||++ +|+++|+||..||++..
T Consensus 209 g~~~~~~V~evmT~--p~~svd~~~~~feAml~m~r~~I~hl~V~e-~gq~~Gilt~~dIl~l~ 269 (610)
T COG2905 209 GRSKTQKVSEVMTS--PVISVDRGDFLFEAMLMMLRNRIKHLPVTE-DGQPLGILTLTDILRLF 269 (610)
T ss_pred CCCcccchhhhhcc--CceeecCcchHHHHHHHHHHhCCceeeeec-CCeeeEEeeHHHHHHhh
Confidence 34567799999999 899999999999999999999999999998 69999999999999864
No 184
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.96 E-value=7.8e-05 Score=52.92 Aligned_cols=54 Identities=37% Similarity=0.551 Sum_probs=47.9
Q ss_pred ccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495 83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (237)
Q Consensus 83 ~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~ 139 (237)
.++.++|.. .+.++..++++.+++..|.+.+.+.+||+|+ |++.|++|.+|+.+
T Consensus 52 ~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~G~it~~d~~~ 105 (106)
T cd04638 52 EQLALLMTR--DPPTVSPDDDVKEAAKLMVENNIRRVPVVDD-GKLVGIVTVADIVR 105 (106)
T ss_pred chHHHHhcC--CCceECCCCCHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence 356778877 7888999999999999999999999999985 79999999999874
No 185
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.95 E-value=2.2e-05 Score=57.90 Aligned_cols=56 Identities=27% Similarity=0.432 Sum_probs=49.3
Q ss_pred cccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEc--CCCcEEEEEehHhHhh
Q 026495 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVID--DDWKLVGLVSDYDLLA 139 (237)
Q Consensus 82 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd--~~~~~~Givt~~dl~~ 139 (237)
..++.++|.+ +++++++++++.+++..|.+.+...+||++ ++|+++|+||.+|+++
T Consensus 70 ~~~~~~~~~~--~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~ 127 (128)
T cd04632 70 DLPVYDAMSS--PVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR 127 (128)
T ss_pred cCcHHHHhcC--CCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence 3468889987 799999999999999999999999999984 4689999999999874
No 186
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=97.94 E-value=2.7e-05 Score=55.67 Aligned_cols=49 Identities=22% Similarity=0.489 Sum_probs=45.1
Q ss_pred cccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495 88 FMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (237)
Q Consensus 88 im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~ 139 (237)
+|.+ ++.++++++++.++++.|.+++.+.+||++ +|+++|+||.+|+.+
T Consensus 56 ~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~-~~~~~Gvvt~~dl~~ 104 (105)
T cd04591 56 YIDP--SPFTVSPRTSLEKVHQLFRKLGLRHLLVVD-EGRLVGIITRKDLLK 104 (105)
T ss_pred hccC--CCceECCCCcHHHHHHHHHHcCCCEEEEEE-CCeEEEEEEhhhhhc
Confidence 7877 788999999999999999999999999996 689999999999974
No 187
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=97.87 E-value=5.7e-05 Score=64.46 Aligned_cols=87 Identities=22% Similarity=0.294 Sum_probs=70.4
Q ss_pred hccCCCceEEecCCce--eeeehhhhcccCCCCCcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCc
Q 026495 50 ATSSDRVSALRRSSAV--FASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWK 127 (237)
Q Consensus 50 ~~~~~~v~v~~~sp~~--~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~ 127 (237)
...++.+|+...+..- ....+... ......++..+|++ .+.++.+.+++..+.+.|.=.++..+||+|++.+
T Consensus 218 kt~~sRfPVvn~~~kvvGvVt~rDv~----~~~~~t~ieKVMtk--np~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~ 291 (432)
T COG4109 218 KTGHSRFPVVNRSMKVVGVVTMRDVL----DKKPSTTIEKVMTK--NPITVRAKTSVASVAQMMIWEGIEMLPVVDSNNT 291 (432)
T ss_pred HcCCCccceecccceEEEEEEehhhh----cCCCCccHHHHhcc--CCeeecccchHHHHHHHHHhccceeeeEEcCCce
Confidence 5667788888755433 33443333 23456788999999 8999999999999999999999999999999999
Q ss_pred EEEEEehHhHhhhcc
Q 026495 128 LVGLVSDYDLLALDS 142 (237)
Q Consensus 128 ~~Givt~~dl~~~~~ 142 (237)
++|+||+.|+++.+.
T Consensus 292 llGiitR~dvlk~lq 306 (432)
T COG4109 292 LLGIITRQDVLKSLQ 306 (432)
T ss_pred EEEEEEHHHHHHHHH
Confidence 999999999997543
No 188
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=97.87 E-value=0.00014 Score=66.31 Aligned_cols=123 Identities=18% Similarity=0.256 Sum_probs=85.7
Q ss_pred eeEEcC-CCCHHHHHHHHHHCCCCeEEEE-cC-CCcEEEEEehHhHhhhcc-c---cCCCCCCCCcccccccchhhHHHH
Q 026495 95 LHVVKP-TTTVDEALEILVEKRITGFPVI-DD-DWKLVGLVSDYDLLALDS-I---SGSGRADNSMFPEVDSTWKTFNEV 167 (237)
Q Consensus 95 ~~~v~~-~~~l~~~~~~~~~~~~~~~pVv-d~-~~~~~Givt~~dl~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~ 167 (237)
...+.. +.++++...+|.++.++.+||+ ++ .++++|+|.++|+.-.+. . +.+.......+.+ .
T Consensus 558 L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~~f~~----------~ 627 (696)
T KOG0475|consen 558 LIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFIVTTSIYFND----------P 627 (696)
T ss_pred heeccccceeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhccccccceecccccCC----------C
Confidence 445544 4899999999999999999988 33 368999999999874322 1 1111100000000 0
Q ss_pred HHHHH--hhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495 168 QKLLS--KTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK 228 (237)
Q Consensus 168 ~~~~~--~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d 228 (237)
.+... ......+.++|...+.++...++.+-+++++.+-+...+.|.+ +|++.|+||++|
T Consensus 628 ~~~~~~~~~~~~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~~-~G~l~Giitkkd 689 (696)
T KOG0475|consen 628 SPSAVAGIPSRLDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQILVTK-NGILLGIITKKD 689 (696)
T ss_pred CccccCCCCCCcCceeeccCCcccccccCcHHHHHHHHHhhCceEEEEcc-CCeeEeeeehHH
Confidence 00000 1123457788988899999999999999999999998887765 899999999876
No 189
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=97.85 E-value=7.2e-05 Score=62.72 Aligned_cols=51 Identities=35% Similarity=0.434 Sum_probs=46.8
Q ss_pred CcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEe
Q 026495 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVS 133 (237)
Q Consensus 81 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt 133 (237)
...+++++|.+ +++++.+++++.++++.|.+.+...+||+|++|+++|+|+
T Consensus 218 ~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GvI~ 268 (268)
T TIGR00393 218 LKSEVRDFMTL--GPKTFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVLH 268 (268)
T ss_pred ccCcHHHhCCC--CCeEECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEEEC
Confidence 35679999988 7899999999999999999999999999998899999985
No 190
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.82 E-value=4.5e-05 Score=55.24 Aligned_cols=56 Identities=16% Similarity=0.253 Sum_probs=48.1
Q ss_pred cccccccccccCceeEEcCCCCHHHHHHHHHHCCCC---eEEEEcCCCcEEEEEehHhHhh
Q 026495 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRIT---GFPVIDDDWKLVGLVSDYDLLA 139 (237)
Q Consensus 82 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~---~~pVvd~~~~~~Givt~~dl~~ 139 (237)
..++.++|.+ .+..+.+++++.+++..|.+.+.. ..||++++|+++|+|+..|+.+
T Consensus 60 ~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~~ 118 (119)
T cd04598 60 KKPVSEVMDP--DPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLLR 118 (119)
T ss_pred CCcHHHhcCC--CcEEecCCCCHHHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHHhc
Confidence 4578899988 799999999999999999988753 4468888899999999999874
No 191
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.78 E-value=5.9e-05 Score=44.84 Aligned_cols=42 Identities=40% Similarity=0.440 Sum_probs=37.9
Q ss_pred ceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495 187 PVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK 228 (237)
Q Consensus 187 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d 228 (237)
++++.+++++.++++.|.+.+.+.+||++++++++|+++..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~ 43 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRD 43 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHH
Confidence 467899999999999999999999999997789999999765
No 192
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=97.77 E-value=8.9e-05 Score=60.05 Aligned_cols=96 Identities=18% Similarity=0.185 Sum_probs=71.1
Q ss_pred ccchhHHH-hccCCCceEEecCCceeeeehhh--hcc-cCCCCCcccccccccccCceeEEcCCCCHHHHHHHHHHCCCC
Q 026495 42 GCRVFSVL-ATSSDRVSALRRSSAVFASGTLT--ANS-AAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRIT 117 (237)
Q Consensus 42 ~~~v~~~~-~~~~~~v~v~~~sp~~~~~~~~~--~~~-~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~ 117 (237)
.......+ ++.++++|++.++..+....-+- .+. .........++++.+| .+.++++-.+.-.++.|+.++.+
T Consensus 88 l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~~~~F~i~~lLRP---av~VPESKrvd~lLkeFR~~RnH 164 (293)
T COG4535 88 LDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRSDAEPFDIKELLRP---AVVVPESKRVDRLLKEFRSQRNH 164 (293)
T ss_pred HHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcCCcccccHHHhccc---ceecccchhHHHHHHHHHhhcCc
Confidence 33444455 78899999998765552222111 111 1122234677788877 88899999999999999999999
Q ss_pred eEEEEcCCCcEEEEEehHhHhhh
Q 026495 118 GFPVIDDDWKLVGLVSDYDLLAL 140 (237)
Q Consensus 118 ~~pVvd~~~~~~Givt~~dl~~~ 140 (237)
.+.|+|+-|.+.|.||.+|++..
T Consensus 165 MAIViDEfGgVsGLVTIEDiLEq 187 (293)
T COG4535 165 MAIVIDEFGGVSGLVTIEDILEQ 187 (293)
T ss_pred eEEEEeccCCeeeeEEHHHHHHH
Confidence 99999999999999999999974
No 193
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=97.71 E-value=9.4e-05 Score=55.51 Aligned_cols=43 Identities=28% Similarity=0.285 Sum_probs=39.6
Q ss_pred CceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495 186 APVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK 228 (237)
Q Consensus 186 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d 228 (237)
++.++.+++++.+|++.|...++..+||+|++|+++|+|+..|
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~D 44 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGD 44 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHH
Confidence 4678999999999999999999999999998899999999776
No 194
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.48 E-value=0.00012 Score=62.04 Aligned_cols=107 Identities=23% Similarity=0.193 Sum_probs=80.3
Q ss_pred CCCcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccc
Q 026495 79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVD 158 (237)
Q Consensus 79 ~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~ 158 (237)
...-++++++|++.+....-.+...-..++..+.......+.+++.+++.+|+|+..++..
T Consensus 270 ~~~VltA~~IM~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~------------------- 330 (386)
T COG4175 270 RSRVLTAKDIMRRPDLLIRKTPGDGPRVALKLLRDEGREYGYAVDRGNKFVGVVSIDSLVK------------------- 330 (386)
T ss_pred hhheeeHHHhhcccccccccccccccchhhhhhhhccchhhHHHhccCceeeEEeccchhc-------------------
Confidence 3456678888885212222233344456788888888777888887788999999988763
Q ss_pred cchhhHHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEcc
Q 026495 159 STWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCS 227 (237)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~ 227 (237)
. .+...+..+..++++.+.+....+.+.+ ++|+|++++++|+|++.
T Consensus 331 ------------------~----~~~~~~~~v~~d~~~~~~~~~~~~~~~p-~aVvde~~r~vG~i~~~ 376 (386)
T COG4175 331 ------------------A----ALIDDVLTVDADTPLSEILARIRQAPCP-VAVVDEDGRYVGIISRG 376 (386)
T ss_pred ------------------c----cccccccccCccchHHHHHHHHhcCCCc-eeEEcCCCcEEEEecHH
Confidence 1 3456677899999999999999988875 78999999999999875
No 195
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=97.48 E-value=0.00025 Score=64.12 Aligned_cols=55 Identities=33% Similarity=0.421 Sum_probs=49.7
Q ss_pred hcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495 174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK 228 (237)
Q Consensus 174 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d 228 (237)
....++.++|.+++.++.+++++.++++.|.+.++..+||+|++++++|+|+.+|
T Consensus 332 l~~~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~d 386 (454)
T TIGR01137 332 LKNATVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRE 386 (454)
T ss_pred hccCCHHHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHH
Confidence 3456899999999999999999999999999999999999998899999999776
No 196
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=97.47 E-value=0.00037 Score=61.54 Aligned_cols=105 Identities=17% Similarity=0.098 Sum_probs=72.1
Q ss_pred CCCcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccc
Q 026495 79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVD 158 (237)
Q Consensus 79 ~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~ 158 (237)
..+-++++++|.+ ...+...+.. .+++. .+...++|+|+ |+++..+...+..
T Consensus 270 ~~~~l~a~~~m~~---~~~~~~~~~~-~~~~~---~~~~~~~~~~~-----~~~~~~~~~~~~~---------------- 321 (382)
T TIGR03415 270 PLNVLTARSLMRP---LTDLEHVDGG-WCVSD---RRDTWLFTIDK-----QVRRRDAKLPVQA---------------- 321 (382)
T ss_pred cccceeHHHHhcc---cccccccCcc-hhhhh---cccceeEeecc-----ceecccchHhHhh----------------
Confidence 3556778888865 3333222222 33433 67788889985 8888877654211
Q ss_pred cchhhHHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495 159 STWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK 228 (237)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d 228 (237)
......+.+ +..+.+++++++++.+++..+.+.+.. ++|+|+ |+++|+|++.+
T Consensus 322 --------------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~-~~~~g~~~~~~ 374 (382)
T TIGR03415 322 --------------WAAEQEVES-LEAAPTVINPDTLMRDVLAARHRTGGA-ILLVEN-GRIVGVIGDDN 374 (382)
T ss_pred --------------cccccchhh-hcccCcccCCCCcHHHHHHHHhcCCCC-eEEeeC-CeEEEEEeHHH
Confidence 001234666 556678999999999999999998876 888885 99999998753
No 197
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=97.38 E-value=0.00023 Score=63.81 Aligned_cols=59 Identities=19% Similarity=0.374 Sum_probs=54.9
Q ss_pred CCcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhh
Q 026495 80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (237)
Q Consensus 80 ~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~ 140 (237)
..+..++++|.+ ++.++.+++..+++.+.+.+++.-.+||||++++++|++|..|+...
T Consensus 193 ~~~~~i~~im~~--~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~~LiG~itiDDiidv 251 (451)
T COG2239 193 EPDELLKDLMED--DVVSVLADDDQEEVARLFEKYDLLAVPVVDEDNRLIGIITIDDIIDV 251 (451)
T ss_pred CcHhHHHHHhcc--cceeecccCCHHHHHHHHHHhCCeecceECCCCceeeeeeHHHHHHH
Confidence 456789999999 79999999999999999999999999999999999999999999864
No 198
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=97.18 E-value=0.00088 Score=58.85 Aligned_cols=55 Identities=25% Similarity=0.438 Sum_probs=49.8
Q ss_pred cccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhc
Q 026495 84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (237)
Q Consensus 84 ~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~ 141 (237)
.+.+.|.+ ...++++++++.+++..|.+++.. +||+|++|+++|+||..++++.+
T Consensus 303 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~i~~~~~~~~~ 357 (363)
T TIGR01186 303 GLQDVLID--DIYTVDAGTLLRETVRKVLKAGIK-VPVVDEDQRLVGIVTRGSLVDAL 357 (363)
T ss_pred chhhhhcc--CCceECCCCcHHHHHHHHHhCCCC-EEEECCCCcEEEEEEHHHHHHHH
Confidence 56777877 788999999999999999999998 99999999999999999999753
No 199
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=96.83 E-value=0.0027 Score=56.49 Aligned_cols=56 Identities=23% Similarity=0.285 Sum_probs=49.3
Q ss_pred cccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhcc
Q 026495 84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS 142 (237)
Q Consensus 84 ~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~ 142 (237)
.+.+.+.+ ...++.+++++.+++..+.+.... +||+|++|+++|+|+..++++.+.
T Consensus 338 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~~~~~~~~~~~~ 393 (400)
T PRK10070 338 GLDAALID--APLAVDAQTPLSELLSHVGQAPCA-VPVVDEDQQYVGIISKGMLLRALD 393 (400)
T ss_pred chhhhhcc--CCceeCCCCCHHHHHHHHHhCCCc-EEEECCCCcEEEEEEHHHHHHHHH
Confidence 56777776 688999999999999999997776 999999999999999999997643
No 200
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=96.68 E-value=0.012 Score=55.30 Aligned_cols=64 Identities=27% Similarity=0.321 Sum_probs=54.2
Q ss_pred CCCCcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCC--CcEEEEEehHhHhhhccc
Q 026495 78 PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD--WKLVGLVSDYDLLALDSI 143 (237)
Q Consensus 78 ~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~--~~~~Givt~~dl~~~~~~ 143 (237)
.....+.|+++|.+ ++.++..+.|..|..+.+..+..+.+|+||+. .-++|.|.++.|..++..
T Consensus 583 ~~~h~v~VE~iMV~--dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll~~ 648 (931)
T KOG0476|consen 583 SSVHTVKVEHIMVT--DVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALLQR 648 (931)
T ss_pred cceeEEEeeeeccc--cceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHHHh
Confidence 34567899999999 99999999999999999988879999999854 457899999999865443
No 201
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=95.79 E-value=0.013 Score=51.34 Aligned_cols=58 Identities=33% Similarity=0.367 Sum_probs=52.3
Q ss_pred CcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhh
Q 026495 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (237)
Q Consensus 81 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~ 140 (237)
....+.++|++ +.++.+.+.++.++-+++.+++...+||||++|+++.++++.||.+.
T Consensus 169 ~~~~~~~vmt~--~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl~k~ 226 (503)
T KOG2550|consen 169 NSLLVSDVMTK--NPVTGAQGITLKEANEILKKIKKGKLPVVDDKGELVAMLSRTDLMKN 226 (503)
T ss_pred ccchhhhhccc--ccccccccccHHHHHHHHHhhhcCCcceeccCCceeeeeehhhhhhh
Confidence 45567889999 56888999999999999999999999999999999999999999864
No 202
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=95.37 E-value=0.028 Score=51.84 Aligned_cols=55 Identities=18% Similarity=0.289 Sum_probs=49.7
Q ss_pred cccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhh
Q 026495 84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (237)
Q Consensus 84 ~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~ 140 (237)
....+|.+ .+.++++++++..+..++++-+.+++.|+++.++..|++|++|+.+.
T Consensus 691 Dl~p~~n~--sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~~~~gilTR~D~~~~ 745 (762)
T KOG0474|consen 691 DLHPFMNP--SPYTVPETMSLAKAFILFRQLGLRHLLVVPKTNRVVGILTRKDLARY 745 (762)
T ss_pred ccccccCC--CCcccCcccchHHHHHHHHHhcceeEEEecCCCceeEEEehhhhhhH
Confidence 44567888 78999999999999999999999999999988889999999999863
No 203
>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]
Probab=95.01 E-value=0.04 Score=50.41 Aligned_cols=124 Identities=19% Similarity=0.149 Sum_probs=89.0
Q ss_pred CCCCCcccccccccccCceeEEcCCCCHH-HHHHHHHHCCCCeEEEEcCCC-cEEEEEehHhHhhhccccCCCCCCCCcc
Q 026495 77 APSSGVYTVGDFMTTKEELHVVKPTTTVD-EALEILVEKRITGFPVIDDDW-KLVGLVSDYDLLALDSISGSGRADNSMF 154 (237)
Q Consensus 77 ~~~~~~~~v~~im~~~~~~~~v~~~~~l~-~~~~~~~~~~~~~~pVvd~~~-~~~Givt~~dl~~~~~~~~~~~~~~~~~ 154 (237)
.-.+..+.++++|.+-+++..+..+..+. +......+.+++++||.+.+. ..+|.+=...++++....
T Consensus 198 ~l~l~ek~~~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~~~~~i~~~L~~~~~~~~~~~---------- 267 (498)
T KOG2118|consen 198 ALELTEKLVGEVMTPIEDVFALDANTKLDRETVGEIVKHGYSRIPVYEQEPKNKIGGLLVMNLLRLLQVE---------- 267 (498)
T ss_pred hHHHHHHHHHHhccchhhheeeccccccchHHHhhHhhcCcceeeeccCcccchhhHHHHhhhhhhhccc----------
Confidence 44567788999999987888888888887 666677799999999998652 223332222222221100
Q ss_pred cccccchhhHHHHHHHHHhhcCCccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495 155 PEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK 228 (237)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d 228 (237)
......++.+.+....+.++.++++.+.++.+.+...+.+.|.+ ...-+|+++..|
T Consensus 268 -----------------~~~~~~~v~~~~~~~l~~vp~~~~~~~~l~~~~~~~~H~~~v~~-~~~~~~~~~l~~ 323 (498)
T KOG2118|consen 268 -----------------VPLEPLPVSESALLRLPLVPENMPLLDLLNEFQKGKSHMAVVRN-GHVDIFVLTLED 323 (498)
T ss_pred -----------------cccccccchhhhccccccCCCcccHHHHHHHHhhhhceeEEEec-CCcceeeEeccc
Confidence 01124567778888888999999999999999999988777776 556788888876
No 204
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=93.82 E-value=0.075 Score=44.26 Aligned_cols=61 Identities=23% Similarity=0.282 Sum_probs=43.8
Q ss_pred CCCcccccccccccC--ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495 79 SSGVYTVGDFMTTKE--ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (237)
Q Consensus 79 ~~~~~~v~~im~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~ 139 (237)
.+...++.+.|.+.. +--.......-.+++..+...+...+||+|++|+++|.+|..+|+.
T Consensus 245 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd~~g~~~G~vt~~~l~~ 307 (309)
T COG1125 245 LLSLVSVADAVRRGEPADGEPLLEGFVDRDALSDFLARGRSVLPVVDEDGRPLGTVTRADLLD 307 (309)
T ss_pred ccchhhHHHhhcccccccCCccccchhhHHHHHHHHhcCCceeEEECCCCcEeeEEEHHHHhh
Confidence 345667777776521 1112334444566778888889999999999999999999999974
No 205
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=93.69 E-value=0.14 Score=45.36 Aligned_cols=52 Identities=15% Similarity=0.314 Sum_probs=43.1
Q ss_pred cccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhh
Q 026495 84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (237)
Q Consensus 84 ~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~ 140 (237)
++.+ +.. +..++++++++.+++..+.++.+. ++|+|+ |+++|+|+..+++..
T Consensus 327 ~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~-~~~~g~~~~~~~~~~ 378 (382)
T TIGR03415 327 EVES-LEA--APTVINPDTLMRDVLAARHRTGGA-ILLVEN-GRIVGVIGDDNIYHA 378 (382)
T ss_pred chhh-hcc--cCcccCCCCcHHHHHHHHhcCCCC-eEEeeC-CeEEEEEeHHHHHHH
Confidence 3445 444 578899999999999999888775 788885 999999999999864
No 206
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=93.08 E-value=0.32 Score=40.63 Aligned_cols=105 Identities=23% Similarity=0.191 Sum_probs=59.6
Q ss_pred HHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHhhcCCcccccc
Q 026495 104 VDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLM 183 (237)
Q Consensus 104 l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im 183 (237)
+.||+++- .++.|++ +|+++-+-+..++++..+.... +++. +.-...+.......+.+.|
T Consensus 196 idEA~kLa-----dri~vm~-~G~i~Q~~~P~~il~~Pan~FV-----------~~f~---g~~~~~~~~l~~~~~~~~~ 255 (309)
T COG1125 196 IDEALKLA-----DRIAVMD-AGEIVQYDTPDEILANPANDFV-----------EDFF---GESERGLRLLSLVSVADAV 255 (309)
T ss_pred HHHHHhhh-----ceEEEec-CCeEEEeCCHHHHHhCccHHHH-----------HHHh---ccccccccccchhhHHHhh
Confidence 56776663 3567777 6999999999999863211000 0000 0000000000112233333
Q ss_pred ccCc----eEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495 184 TPAP----VVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK 228 (237)
Q Consensus 184 ~~~~----~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d 228 (237)
.... ..+.......+++..+...+...+||+|++|+++|.||+.+
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd~~g~~~G~vt~~~ 304 (309)
T COG1125 256 RRGEPADGEPLLEGFVDRDALSDFLARGRSVLPVVDEDGRPLGTVTRAD 304 (309)
T ss_pred cccccccCCccccchhhHHHHHHHHhcCCceeEEECCCCcEeeEEEHHH
Confidence 2211 12334445556888888888889999999999999999865
No 207
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=89.84 E-value=0.87 Score=42.37 Aligned_cols=58 Identities=14% Similarity=0.239 Sum_probs=49.9
Q ss_pred CCcccccccccccCceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhh
Q 026495 80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (237)
Q Consensus 80 ~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~ 140 (237)
......+++|.. .+.++....+.+-+++++++-+.+...|.. +|++.|+||.+|+++.
T Consensus 636 ~~~~~lk~il~~--tp~tv~d~tp~~~v~~~F~~lg~~~~~v~~-~G~l~Giitkkd~l~~ 693 (696)
T KOG0475|consen 636 PSRLDLKDILDM--TPFTVTDLTPMETVVDLFRKLGLRQILVTK-NGILLGIITKKDCLRH 693 (696)
T ss_pred CCCcCceeeccC--CcccccccCcHHHHHHHHHhhCceEEEEcc-CCeeEeeeehHHHHHh
Confidence 455667888887 788999999999999999999998887665 7999999999999864
No 208
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=89.80 E-value=0.68 Score=39.89 Aligned_cols=47 Identities=26% Similarity=0.367 Sum_probs=40.5
Q ss_pred ceeEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhc
Q 026495 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (237)
Q Consensus 94 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~ 141 (237)
.+..+..++++.+.+..+.+... .++|+|++|+++|+++...++.++
T Consensus 336 ~~~~v~~d~~~~~~~~~~~~~~~-p~aVvde~~r~vG~i~~~~vl~aL 382 (386)
T COG4175 336 DVLTVDADTPLSEILARIRQAPC-PVAVVDEDGRYVGIISRGELLEAL 382 (386)
T ss_pred cccccCccchHHHHHHHHhcCCC-ceeEEcCCCcEEEEecHHHHHHHH
Confidence 57788999999999988877766 578999999999999999998753
No 209
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=82.31 E-value=1.2 Score=42.46 Aligned_cols=51 Identities=16% Similarity=0.158 Sum_probs=44.2
Q ss_pred CccccccccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCC--CcEEEEEEcc
Q 026495 177 KMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDAD--GWNYHKRKCS 227 (237)
Q Consensus 177 ~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~--~~~iGvIt~~ 227 (237)
..++++|.+++.++..+++..|..+.+.....+.+|+|+.. .-++|-|.++
T Consensus 588 v~VE~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~ 640 (931)
T KOG0476|consen 588 VKVEHIMVTDVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARR 640 (931)
T ss_pred EEeeeeccccceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHH
Confidence 46899999999999999999999999998879999999853 3588988765
No 210
>PF07085 DRTGG: DRTGG domain; InterPro: IPR010766 This presumed domain is about 120 amino acids in length. It is found associated with CBS domains IPR000644 from INTERPRO, as well as the CbiA domain IPR002586 from INTERPRO. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea. ; PDB: 3L31_B 3L2B_A 2IOJ_A.
Probab=78.03 E-value=0.81 Score=32.51 Aligned_cols=46 Identities=11% Similarity=0.240 Sum_probs=29.5
Q ss_pred chhhhhccCCEEEEecCccchhHHH--hccCCCceEEecCCce-eeeehhh
Q 026495 25 GRTSFALQLPCLLLSRPGCRVFSVL--ATSSDRVSALRRSSAV-FASGTLT 72 (237)
Q Consensus 25 ~~~ai~~~v~~li~~~~~~~v~~~~--~~~~~~v~v~~~sp~~-~~~~~~~ 72 (237)
.+.|+..+++++++++ +..+.+.+ .+...++|++. +|++ +...+.+
T Consensus 54 ~~~a~~~~i~~iIltg-~~~~~~~v~~la~~~~i~vi~-t~~dtf~ta~~i 102 (105)
T PF07085_consen 54 QLAAIEAGIACIILTG-GLEPSEEVLELAKELGIPVIS-TPYDTFETARLI 102 (105)
T ss_dssp HHHHCCTTECEEEEET-T----HHHHHHHHHHT-EEEE--SS-HHHHHHHH
T ss_pred HHHHHHhCCCEEEEeC-CCCCCHHHHHHHHHCCCEEEE-ECCCHHHHHHHH
Confidence 4567899999999998 77777777 55666799999 8887 6555443
No 211
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=56.77 E-value=36 Score=32.34 Aligned_cols=103 Identities=14% Similarity=0.140 Sum_probs=58.1
Q ss_pred HHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhhhccccCCCCCCCCcccccccchhhHHHHHHHHHhhcCCcccccc
Q 026495 104 VDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLM 183 (237)
Q Consensus 104 l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im 183 (237)
+.++...+...+ ..+++.|.+|.++.+....++.......+. ..+ ..|.+ ....+..+.-.+
T Consensus 61 l~~l~~~l~~~~-~~~~l~D~~G~vL~~~g~~~~~~~~~~~~~-~~G--------~~w~E--------~~~GTnaig~al 122 (638)
T PRK11388 61 LEDAWEYMADRE-CALLILDETGCILSRNGDPQTLQQLSALGF-NDG--------TYCAE--------GIIGTNALSLAA 122 (638)
T ss_pred HHHHHHHhcCCC-cEEEEEcCCceEEEEeCCHHHHHHHHHcCC-ccC--------Cccch--------hccCcCHHHHHH
Confidence 455555555555 588899999999999988887753221111 001 11110 000111222222
Q ss_pred -ccCceEEcCCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEcc
Q 026495 184 -TPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCS 227 (237)
Q Consensus 184 -~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~ 227 (237)
...+..|.......+.++. ......||.|.+|+++|+|...
T Consensus 123 ~~~~pv~v~g~EH~~~~~~~---~~c~aaPI~d~~G~liGvl~l~ 164 (638)
T PRK11388 123 ISGQPVKTMGDQHFKQALHN---WAFCATPVFDSKGRLTGTIALA 164 (638)
T ss_pred hcCCceEEecHHHHHHhccC---ceEEeeEEEcCCCCEEEEEEEE
Confidence 3445666665555554433 3445789999889999999754
No 212
>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.
Probab=51.01 E-value=28 Score=23.28 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=19.5
Q ss_pred CCeEEEEcCCCcEEEEEehHhHhhh
Q 026495 116 ITGFPVIDDDWKLVGLVSDYDLLAL 140 (237)
Q Consensus 116 ~~~~pVvd~~~~~~Givt~~dl~~~ 140 (237)
...+-|+|++|..+|+++.++-++.
T Consensus 12 ~~~VrlI~~~g~~lGv~~~~eAl~~ 36 (76)
T PF05198_consen 12 APEVRLIDEDGEQLGVMSLREALRL 36 (76)
T ss_dssp -SEEEEE-TTS-EEEEEEHHHHHHH
T ss_pred CCEEEEECCCCcEeceEEHHHHHHH
Confidence 5678899999999999999998864
No 213
>PF14827 Cache_3: Sensory domain of two-component sensor kinase; PDB: 1OJG_A 3BY8_A 1P0Z_I 2V9A_A 2J80_B.
Probab=48.93 E-value=19 Score=25.77 Aligned_cols=18 Identities=44% Similarity=0.443 Sum_probs=13.8
Q ss_pred eEEEEcCCCcEEEEEehH
Q 026495 118 GFPVIDDDWKLVGLVSDY 135 (237)
Q Consensus 118 ~~pVvd~~~~~~Givt~~ 135 (237)
..||.|.+|+++|+|...
T Consensus 93 ~~PV~d~~g~viG~V~VG 110 (116)
T PF14827_consen 93 FAPVYDSDGKVIGVVSVG 110 (116)
T ss_dssp EEEEE-TTS-EEEEEEEE
T ss_pred EEeeECCCCcEEEEEEEE
Confidence 689998889999999863
No 214
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=48.44 E-value=44 Score=31.08 Aligned_cols=36 Identities=17% Similarity=0.302 Sum_probs=29.5
Q ss_pred CHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495 103 TVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (237)
Q Consensus 103 ~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~ 139 (237)
.++.+.+...+.+-.-++|+. +|++.|+|..+|+.+
T Consensus 414 ~l~~~~~~vs~~GGTPL~V~~-~~~~~GVI~LkDivK 449 (681)
T COG2216 414 DLDAAVDEVSRLGGTPLVVVE-NGRILGVIYLKDIVK 449 (681)
T ss_pred HHHHHHHHHHhcCCCceEEEE-CCEEEEEEEehhhcc
Confidence 356677777777777788887 699999999999986
No 215
>PF14827 Cache_3: Sensory domain of two-component sensor kinase; PDB: 1OJG_A 3BY8_A 1P0Z_I 2V9A_A 2J80_B.
Probab=41.97 E-value=30 Score=24.74 Aligned_cols=17 Identities=29% Similarity=0.221 Sum_probs=12.8
Q ss_pred EEEEEcCCCcEEEEEEc
Q 026495 210 RLPVVDADGWNYHKRKC 226 (237)
Q Consensus 210 ~lpVvd~~~~~iGvIt~ 226 (237)
..||.|.+|+++|+|..
T Consensus 93 ~~PV~d~~g~viG~V~V 109 (116)
T PF14827_consen 93 FAPVYDSDGKVIGVVSV 109 (116)
T ss_dssp EEEEE-TTS-EEEEEEE
T ss_pred EEeeECCCCcEEEEEEE
Confidence 57999888999999974
No 216
>PF02743 Cache_1: Cache domain; InterPro: IPR004010 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions [].; GO: 0016020 membrane; PDB: 3C8C_A 3LIB_D 3LIA_A 3LI8_A 3LI9_A.
Probab=32.40 E-value=56 Score=21.38 Aligned_cols=17 Identities=41% Similarity=0.747 Sum_probs=14.1
Q ss_pred eEEEEcCCCcEEEEEeh
Q 026495 118 GFPVIDDDWKLVGLVSD 134 (237)
Q Consensus 118 ~~pVvd~~~~~~Givt~ 134 (237)
..||.+++|+++|++..
T Consensus 18 s~pi~~~~g~~~Gvv~~ 34 (81)
T PF02743_consen 18 SVPIYDDDGKIIGVVGI 34 (81)
T ss_dssp EEEEEETTTEEEEEEEE
T ss_pred EEEEECCCCCEEEEEEE
Confidence 46899988999999865
No 217
>PF02603 Hpr_kinase_N: HPr Serine kinase N terminus; InterPro: IPR011126 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the N-terminal region of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller. The blades are formed by two N-terminal domains each, and the compact central hub assembles the C-terminal kinase domains []. ; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 1KNX_B 1KO7_A.
Probab=31.73 E-value=33 Score=25.25 Aligned_cols=37 Identities=22% Similarity=0.442 Sum_probs=22.9
Q ss_pred hhhhhccCCEEEEecCccchhHHH--hccCCCceEEecCCc
Q 026495 26 RTSFALQLPCLLLSRPGCRVFSVL--ATSSDRVSALRRSSA 64 (237)
Q Consensus 26 ~~ai~~~v~~li~~~~~~~v~~~~--~~~~~~v~v~~~sp~ 64 (237)
...+..+.||++++. +..+.+.+ .+..+++|+.. |+.
T Consensus 75 ~~l~~~~~P~iIvt~-~~~~p~~l~e~a~~~~ipll~-t~~ 113 (127)
T PF02603_consen 75 EKLFSYNPPCIIVTR-GLEPPPELIELAEKYNIPLLR-TPL 113 (127)
T ss_dssp HHHCTTT-S-EEEET-TT---HHHHHHHHHCT--EEE-ESS
T ss_pred HHHhCCCCCEEEEEC-cCCCCHHHHHHHHHhCCcEEE-cCC
Confidence 345688999999998 77777777 67788999988 544
No 218
>PHA00673 acetyltransferase domain containing protein
Probab=29.54 E-value=1.2e+02 Score=23.33 Aligned_cols=33 Identities=6% Similarity=-0.339 Sum_probs=25.9
Q ss_pred CCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEc
Q 026495 194 TNLEDAARLLLETKYRRLPVVDADGWNYHKRKC 226 (237)
Q Consensus 194 ~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~ 226 (237)
.+-.++++.+.+.+...+.|...+|+++|.+..
T Consensus 40 ~~y~~af~ai~~dp~~~llVa~~~g~vVG~~~l 72 (154)
T PHA00673 40 APDHHAYAGMEAAGVAHFLGVFRGEELVGFACL 72 (154)
T ss_pred chhHHHHHHHHhCCCcEEEEEEECCEEEEEEEE
Confidence 556677888888888888888668999996654
No 219
>PF14332 DUF4388: Domain of unknown function (DUF4388)
Probab=29.53 E-value=66 Score=22.16 Aligned_cols=41 Identities=17% Similarity=0.140 Sum_probs=31.2
Q ss_pred CCCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEcccCCCCC
Q 026495 192 ETTNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSKGGSSN 233 (237)
Q Consensus 192 ~~~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d~~~~~ 233 (237)
.+.++.++++.+..........++ .+.-.|.|..++|.+-+
T Consensus 5 ~~~~l~dlLq~l~~~~ktG~L~v~-~~~~~~~i~f~~G~iv~ 45 (103)
T PF14332_consen 5 SDFSLPDLLQLLEQSRKTGVLEVQ-SGGGEGRIYFRDGRIVH 45 (103)
T ss_pred ccCCHHHHHHHHHhcCCeEEEEEE-eCCcEEEEEEECCEEEE
Confidence 356899999999988877666665 34455889999998754
No 220
>COG0290 InfC Translation initiation factor 3 (IF-3) [Translation, ribosomal structure and biogenesis]
Probab=29.39 E-value=52 Score=25.74 Aligned_cols=33 Identities=27% Similarity=0.316 Sum_probs=26.1
Q ss_pred CCCCeEEEEcCCCcEEEEEehHhHhhhccccCC
Q 026495 114 KRITGFPVIDDDWKLVGLVSDYDLLALDSISGS 146 (237)
Q Consensus 114 ~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~ 146 (237)
-+.+.+-+++++|.-+|+++..+-++.....+.
T Consensus 16 Ir~~evrlIg~~GeqlGiv~~~eAL~lA~e~~L 48 (176)
T COG0290 16 IRAREVRLIGEDGEQLGIVSIEEALKLAEEAGL 48 (176)
T ss_pred ccccEEEEECCCCcEEcceeHHHHHHHHHHcCC
Confidence 356778899999999999999999876544443
No 221
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=29.08 E-value=1.8e+02 Score=20.39 Aligned_cols=48 Identities=10% Similarity=0.108 Sum_probs=26.9
Q ss_pred CccccccccCceEEcCCC---CHHHHHHHHHHcCCcEEEEEcC-CCcEEEEE
Q 026495 177 KMVGDLMTPAPVVVRETT---NLEDAARLLLETKYRRLPVVDA-DGWNYHKR 224 (237)
Q Consensus 177 ~~v~~im~~~~~~v~~~~---~l~~a~~~m~~~~~~~lpVvd~-~~~~iGvI 224 (237)
..+.+.+..+.+.+..+. ...+..+.+...+++.+.+++. +|+++..+
T Consensus 43 ~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~l~~~ 94 (114)
T cd02958 43 ESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEVLKVW 94 (114)
T ss_pred HHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCcEeEEE
Confidence 345555555544444333 2334445555566777888887 67766543
No 222
>PF14044 NETI: NETI protein
Probab=27.46 E-value=89 Score=19.64 Aligned_cols=21 Identities=14% Similarity=0.235 Sum_probs=18.2
Q ss_pred EEcCCCCHHHHHHHHHHCCCC
Q 026495 97 VVKPTTTVDEALEILVEKRIT 117 (237)
Q Consensus 97 ~v~~~~~l~~~~~~~~~~~~~ 117 (237)
.+.++.|+++.++.|.+.++.
T Consensus 3 eV~enETI~~CL~RM~~eGY~ 23 (57)
T PF14044_consen 3 EVEENETISDCLARMKKEGYM 23 (57)
T ss_pred eccCCCcHHHHHHHHHHcCCC
Confidence 477899999999999998763
No 223
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=26.58 E-value=1.1e+02 Score=28.65 Aligned_cols=34 Identities=18% Similarity=0.082 Sum_probs=28.8
Q ss_pred CCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEccc
Q 026495 194 TNLEDAARLLLETKYRRLPVVDADGWNYHKRKCSK 228 (237)
Q Consensus 194 ~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~d 228 (237)
..++.+.+...+.|-.-++|+. +|++.|+|..+|
T Consensus 413 ~~l~~~~~~vs~~GGTPL~V~~-~~~~~GVI~LkD 446 (681)
T COG2216 413 EDLDAAVDEVSRLGGTPLVVVE-NGRILGVIYLKD 446 (681)
T ss_pred HHHHHHHHHHHhcCCCceEEEE-CCEEEEEEEehh
Confidence 3577888888888888888987 799999999877
No 224
>PF13365 Trypsin_2: Trypsin-like peptidase domain; PDB: 1Y8T_A 2Z9I_A 3QO6_A 1L1J_A 1QY6_A 2O8L_A 3OTP_E 2ZLE_I 1KY9_A 3CS0_A ....
Probab=25.56 E-value=51 Score=22.90 Aligned_cols=19 Identities=37% Similarity=0.616 Sum_probs=16.5
Q ss_pred HCCCCeEEEEcCCCcEEEE
Q 026495 113 EKRITGFPVIDDDWKLVGL 131 (237)
Q Consensus 113 ~~~~~~~pVvd~~~~~~Gi 131 (237)
..+.+.-||+|.+|+++|+
T Consensus 102 ~~G~SGgpv~~~~G~vvGi 120 (120)
T PF13365_consen 102 RPGSSGGPVFDSDGRVVGI 120 (120)
T ss_dssp STTTTTSEEEETTSEEEEE
T ss_pred CCCcEeHhEECCCCEEEeC
Confidence 4578889999999999996
No 225
>PF13596 PAS_10: PAS domain; PDB: 3CAX_A 2QKP_D.
Probab=25.50 E-value=64 Score=22.22 Aligned_cols=17 Identities=29% Similarity=0.354 Sum_probs=11.7
Q ss_pred CCeEEEEcCCCcEEEEE
Q 026495 116 ITGFPVIDDDWKLVGLV 132 (237)
Q Consensus 116 ~~~~pVvd~~~~~~Giv 132 (237)
.+..|+.|++|++.|++
T Consensus 83 ~~~~P~~~~~g~~~G~v 99 (106)
T PF13596_consen 83 VRYRPYRDEDGEYAGAV 99 (106)
T ss_dssp EEEEEEE-TTS-EEEEE
T ss_pred EEEEEEECCCCCEEEEE
Confidence 34578888889999976
No 226
>PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A ....
Probab=25.23 E-value=93 Score=22.80 Aligned_cols=42 Identities=19% Similarity=0.133 Sum_probs=25.1
Q ss_pred CHHHHHHHHH-HcCCcEEEEEcCCCcEEEEEEcccCCCCCCCC
Q 026495 195 NLEDAARLLL-ETKYRRLPVVDADGWNYHKRKCSKGGSSNKTC 236 (237)
Q Consensus 195 ~l~~a~~~m~-~~~~~~lpVvd~~~~~iGvIt~~d~~~~~~~~ 236 (237)
.+.+.++.+. ..+...+.|.+.+|+++|+++..+-...+..|
T Consensus 36 ~~~~~~~~~~~~~~~~~~~v~~~~g~iiG~~~~~~~~~~~~~~ 78 (155)
T PF13420_consen 36 SFERWIESIIDSSKQRLFLVAEEDGKIIGYVSLRDIDPYNHTA 78 (155)
T ss_dssp HHHHHHHHHHHHHTTEEEEEEECTTEEEEEEEEEESSSGTTEE
T ss_pred HHHHHHHHhcccCCCcEEEEEEcCCcEEEEEEEEeeeccCCEE
Confidence 4455555542 23333444554589999999988665555544
No 227
>PF12282 H_kinase_N: Signal transduction histidine kinase; InterPro: IPR022066 This domain is found in bacteria. This domain is about 150 amino acids in length. This domain is found associated with PF07568 from PFAM, PF08448 from PFAM, PF02518 from PFAM. This domain has a single completely conserved residue P that may be functionally important. This family is mostly annotated as a histidine kinase involved in signal transduction but there is little published evidence to support this. ; PDB: 2YKH_B 2YKF_A.
Probab=24.09 E-value=77 Score=23.94 Aligned_cols=18 Identities=11% Similarity=0.078 Sum_probs=14.9
Q ss_pred cEEEEEcCCCcEEEEEEcc
Q 026495 209 RRLPVVDADGWNYHKRKCS 227 (237)
Q Consensus 209 ~~lpVvd~~~~~iGvIt~~ 227 (237)
..+||++ +|+++|+|++.
T Consensus 107 ~~~PI~~-~~~vIaVl~~~ 124 (145)
T PF12282_consen 107 EVVPIRR-NGRVIAVLIRE 124 (145)
T ss_dssp EEEEEEE-TTEEEEEEEEE
T ss_pred EEEEEEE-CCEEEEEEEEE
Confidence 4789999 57999999953
No 228
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=23.10 E-value=1.4e+02 Score=20.44 Aligned_cols=33 Identities=18% Similarity=0.003 Sum_probs=21.2
Q ss_pred CCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEcc
Q 026495 194 TNLEDAARLLLETKYRRLPVVDADGWNYHKRKCS 227 (237)
Q Consensus 194 ~~l~~a~~~m~~~~~~~lpVvd~~~~~iGvIt~~ 227 (237)
.+.....+.+.+ +...+.|...+++++|++...
T Consensus 30 ~~~~~~~~~~~~-~~~~~~v~~~~~~ivG~~~~~ 62 (117)
T PF13673_consen 30 YSPEDLEEYLEE-GSHTIFVAEEGGEIVGFAWLE 62 (117)
T ss_dssp SSHHHHHHHHCT-CCCEEEEEEETTEEEEEEEEE
T ss_pred cCHHHHHHHHHh-cCCEEEEEEECCEEEEEEEEc
Confidence 344444444444 434566666689999999876
No 229
>PHA00673 acetyltransferase domain containing protein
Probab=22.33 E-value=2e+02 Score=22.09 Aligned_cols=36 Identities=14% Similarity=0.030 Sum_probs=28.1
Q ss_pred CCHHHHHHHHHHCCCCeEEEEcCCCcEEEEEehHhH
Q 026495 102 TTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137 (237)
Q Consensus 102 ~~l~~~~~~~~~~~~~~~pVvd~~~~~~Givt~~dl 137 (237)
.+-.+++..+.+.....+.|..++|+++|.+...-+
T Consensus 40 ~~y~~af~ai~~dp~~~llVa~~~g~vVG~~~l~~~ 75 (154)
T PHA00673 40 APDHHAYAGMEAAGVAHFLGVFRGEELVGFACLLVT 75 (154)
T ss_pred chhHHHHHHHHhCCCcEEEEEEECCEEEEEEEEEEe
Confidence 455667888888888888888778999998776544
No 230
>PRK10638 glutaredoxin 3; Provisional
Probab=20.50 E-value=2e+02 Score=18.81 Aligned_cols=28 Identities=29% Similarity=0.220 Sum_probs=17.8
Q ss_pred HHHHCCCCeEEEEcCCCcEEEEEehHhHhh
Q 026495 110 ILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (237)
Q Consensus 110 ~~~~~~~~~~pVvd~~~~~~Givt~~dl~~ 139 (237)
+...++...+|++--+|+++|=. +++.+
T Consensus 44 l~~~~g~~~vP~i~~~g~~igG~--~~~~~ 71 (83)
T PRK10638 44 MIKRSGRTTVPQIFIDAQHIGGC--DDLYA 71 (83)
T ss_pred HHHHhCCCCcCEEEECCEEEeCH--HHHHH
Confidence 33456778899885567766533 55554
Done!