BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026496
(237 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UNB|D Chain D, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|R Chain R, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|FF Chain f, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|TT Chain t, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|D Chain D, Mouse Constitutive 20s Proteasome
pdb|3UNE|R Chain R, Mouse Constitutive 20s Proteasome
pdb|3UNE|FF Chain f, Mouse Constitutive 20s Proteasome
pdb|3UNE|TT Chain t, Mouse Constitutive 20s Proteasome
pdb|3UNF|D Chain D, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|R Chain R, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|D Chain D, Mouse 20s Immunoproteasome
pdb|3UNH|R Chain R, Mouse 20s Immunoproteasome
Length = 241
Score = 343 bits (881), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 167/241 (69%), Positives = 200/241 (82%), Gaps = 4/241 (1%)
Query: 1 MFLTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLE 60
MFLTR+EYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIG++T EGV LAVEKRITSPL+E
Sbjct: 1 MFLTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLME 60
Query: 61 PSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLA 120
PSS+EKI+EID HIGCAMSGLIADA+TL++ ARVETQNH F+Y E MTVES TQA+ +LA
Sbjct: 61 PSSIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLA 120
Query: 121 LRFGEGDEE--SMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSS 178
L+FGE D + +MSRPFGV+LL G DE GP L++ DPSGTF QC+A+AIGS SEGA SS
Sbjct: 121 LQFGEEDADPGAMSRPFGVALLFGGVDEKGPQLFHMDPSGTFVQCDARAIGSASEGAQSS 180
Query: 179 LQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAP--TYHLYTPSEVEAVINR 236
LQE Y+K +TL+EA +L ILKQVMEEK+ N+++A V P +H++T E+E VI
Sbjct: 181 LQEVYHKSMTLKEAIKSSLIILKQVMEEKLNATNIELATVQPGQNFHMFTKEELEEVIKD 240
Query: 237 L 237
+
Sbjct: 241 I 241
>pdb|1IRU|E Chain E, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|S Chain S, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 241
Score = 341 bits (874), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 166/241 (68%), Positives = 199/241 (82%), Gaps = 4/241 (1%)
Query: 1 MFLTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLE 60
MFLTR+EYDRGVNTFSPEGRLFQVEY IEAIKLGSTAIG++T EGV LAVEKRITSPL+E
Sbjct: 1 MFLTRSEYDRGVNTFSPEGRLFQVEYDIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLME 60
Query: 61 PSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLA 120
PSS+EKI+EID HIGCAMSGLIADA+TL++ ARVETQNH F+Y E MTVES TQA+ +LA
Sbjct: 61 PSSIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLA 120
Query: 121 LRFGEGDEE--SMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSS 178
L+FGE D + +MSRPFGV+LL G DE GP L++ DPSGTF QC+A+AIGS SEGA SS
Sbjct: 121 LQFGEEDADPGAMSRPFGVALLFGGVDEKGPQLFHMDPSGTFVQCDARAIGSASEGAQSS 180
Query: 179 LQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAP--TYHLYTPSEVEAVINR 236
LQE Y+K +TL+EA +L ILKQVMEEK+ N+++A V P +H++T E+E VI
Sbjct: 181 LQELYHKSMTLKEAIKSSLIILKQVMEEKLNATNIELATVQPGQNFHMFTKEELEEVIKD 240
Query: 237 L 237
+
Sbjct: 241 I 241
>pdb|1VSY|E Chain E, Proteasome Activator Complex
pdb|1VSY|S Chain S, Proteasome Activator Complex
pdb|3L5Q|J Chain J, Proteasome Activator Complex
pdb|3L5Q|V Chain V, Proteasome Activator Complex
pdb|3MG6|D Chain D, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|R Chain R, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|D Chain D, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|R Chain R, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|D Chain D, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|R Chain R, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
Length = 250
Score = 300 bits (768), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 149/243 (61%), Positives = 185/243 (76%), Gaps = 6/243 (2%)
Query: 1 MFLTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLE 60
MFLTR+EYDRGV+TFSPEGRLFQVEY++EAIKLGSTAIG+ TKEGVVL VEKR TSPLLE
Sbjct: 1 MFLTRSEYDRGVSTFSPEGRLFQVEYSLEAIKLGSTAIGIATKEGVVLGVEKRATSPLLE 60
Query: 61 PSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLA 120
S+EKI+EID HIGCAMSGL ADAR+++EHAR H Y E + VES TQ++CDLA
Sbjct: 61 SDSIEKIVEIDRHIGCAMSGLTADARSMIEHARTAAVTHNLYYDEDINVESLTQSVCDLA 120
Query: 121 LRFGE---GDEESMSRPFGVSLLIAGSD-ENGPSLYYTDPSGTFWQCNAKAIGSGSEGAD 176
LRFGE G+E MSRPFGV+LLIAG D ++G L++ +PSGTF++ NAKAIGSGSEGA
Sbjct: 121 LRFGEGASGEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQ 180
Query: 177 SSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPT--YHLYTPSEVEAVI 234
+ L +++ LTL+EAE + L ILKQVMEEK+ NN ++ + + +Y + +I
Sbjct: 181 AELLNEWHSSLTLKEAELLVLKILKQVMEEKLDENNAQLSCITKQDGFKIYDNEKTAELI 240
Query: 235 NRL 237
L
Sbjct: 241 KEL 243
>pdb|4G4S|E Chain E, Structure Of Proteasome-Pba1-Pba2 Complex
Length = 261
Score = 300 bits (767), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 149/243 (61%), Positives = 185/243 (76%), Gaps = 6/243 (2%)
Query: 1 MFLTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLE 60
MFLTR+EYDRGV+TFSPEGRLFQVEY++EAIKLGSTAIG+ TKEGVVL VEKR TSPLLE
Sbjct: 2 MFLTRSEYDRGVSTFSPEGRLFQVEYSLEAIKLGSTAIGIATKEGVVLGVEKRATSPLLE 61
Query: 61 PSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLA 120
S+EKI+EID HIGCAMSGL ADAR+++EHAR H Y E + VES TQ++CDLA
Sbjct: 62 SDSIEKIVEIDRHIGCAMSGLTADARSMIEHARTAAVTHNLYYDEDINVESLTQSVCDLA 121
Query: 121 LRFGE---GDEESMSRPFGVSLLIAGSD-ENGPSLYYTDPSGTFWQCNAKAIGSGSEGAD 176
LRFGE G+E MSRPFGV+LLIAG D ++G L++ +PSGTF++ NAKAIGSGSEGA
Sbjct: 122 LRFGEGASGEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQ 181
Query: 177 SSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPT--YHLYTPSEVEAVI 234
+ L +++ LTL+EAE + L ILKQVMEEK+ NN ++ + + +Y + +I
Sbjct: 182 AELLNEWHSSLTLKEAELLVLKILKQVMEEKLDENNAQLSCITKQDGFKIYDNEKTAELI 241
Query: 235 NRL 237
L
Sbjct: 242 KEL 244
>pdb|1FNT|E Chain E, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|S Chain S, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|E Chain E, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|S Chain S, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2ZCY|D Chain D, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|R Chain R, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|D Chain D, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|R Chain R, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3NZJ|D Chain D, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|R Chain R, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|D Chain D, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|R Chain R, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|D Chain D, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|R Chain R, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3OEU|D Chain D, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|R Chain R, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|D Chain D, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|R Chain R, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3UN4|D Chain D, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|R Chain R, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|D Chain D, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|R Chain R, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3SDI|D Chain D, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|R Chain R, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|D Chain D, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|R Chain R, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|4B4T|E Chain E, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
pdb|4INR|D Chain D, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|R Chain R, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|D Chain D, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|R Chain R, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|D Chain D, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|R Chain R, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 260
Score = 300 bits (767), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 149/243 (61%), Positives = 185/243 (76%), Gaps = 6/243 (2%)
Query: 1 MFLTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLE 60
MFLTR+EYDRGV+TFSPEGRLFQVEY++EAIKLGSTAIG+ TKEGVVL VEKR TSPLLE
Sbjct: 1 MFLTRSEYDRGVSTFSPEGRLFQVEYSLEAIKLGSTAIGIATKEGVVLGVEKRATSPLLE 60
Query: 61 PSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLA 120
S+EKI+EID HIGCAMSGL ADAR+++EHAR H Y E + VES TQ++CDLA
Sbjct: 61 SDSIEKIVEIDRHIGCAMSGLTADARSMIEHARTAAVTHNLYYDEDINVESLTQSVCDLA 120
Query: 121 LRFGE---GDEESMSRPFGVSLLIAGSD-ENGPSLYYTDPSGTFWQCNAKAIGSGSEGAD 176
LRFGE G+E MSRPFGV+LLIAG D ++G L++ +PSGTF++ NAKAIGSGSEGA
Sbjct: 121 LRFGEGASGEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQ 180
Query: 177 SSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPT--YHLYTPSEVEAVI 234
+ L +++ LTL+EAE + L ILKQVMEEK+ NN ++ + + +Y + +I
Sbjct: 181 AELLNEWHSSLTLKEAELLVLKILKQVMEEKLDENNAQLSCITKQDGFKIYDNEKTAELI 240
Query: 235 NRL 237
L
Sbjct: 241 KEL 243
>pdb|2Z5C|C Chain C, Crystal Structure Of A Novel Chaperone Complex For Yeast
20s Proteasome Assembly
pdb|2Z5C|F Chain F, Crystal Structure Of A Novel Chaperone Complex For Yeast
20s Proteasome Assembly
Length = 262
Score = 300 bits (767), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 149/243 (61%), Positives = 185/243 (76%), Gaps = 6/243 (2%)
Query: 1 MFLTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLE 60
MFLTR+EYDRGV+TFSPEGRLFQVEY++EAIKLGSTAIG+ TKEGVVL VEKR TSPLLE
Sbjct: 3 MFLTRSEYDRGVSTFSPEGRLFQVEYSLEAIKLGSTAIGIATKEGVVLGVEKRATSPLLE 62
Query: 61 PSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLA 120
S+EKI+EID HIGCAMSGL ADAR+++EHAR H Y E + VES TQ++CDLA
Sbjct: 63 SDSIEKIVEIDRHIGCAMSGLTADARSMIEHARTAAVTHNLYYDEDINVESLTQSVCDLA 122
Query: 121 LRFGE---GDEESMSRPFGVSLLIAGSD-ENGPSLYYTDPSGTFWQCNAKAIGSGSEGAD 176
LRFGE G+E MSRPFGV+LLIAG D ++G L++ +PSGTF++ NAKAIGSGSEGA
Sbjct: 123 LRFGEGASGEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQ 182
Query: 177 SSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPT--YHLYTPSEVEAVI 234
+ L +++ LTL+EAE + L ILKQVMEEK+ NN ++ + + +Y + +I
Sbjct: 183 AELLNEWHSSLTLKEAELLVLKILKQVMEEKLDENNAQLSCITKQDGFKIYDNEKTAELI 242
Query: 235 NRL 237
L
Sbjct: 243 KEL 245
>pdb|1G0U|D Chain D, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|R Chain R, A Gated Channel Into The Proteasome Core Particle
Length = 241
Score = 284 bits (726), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 142/240 (59%), Positives = 178/240 (74%), Gaps = 9/240 (3%)
Query: 1 MFLTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLE 60
MFLTR+EYDRGV+TFSPEGRLFQVEY++EAIKLGSTAIG+ TKEGVVL VEKR TSPLLE
Sbjct: 1 MFLTRSEYDRGVSTFSPEGRLFQVEYSLEAIKLGSTAIGIATKEGVVLGVEKRATSPLLE 60
Query: 61 PSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLA 120
S+EKI+EID HIGCAMSGL ADAR+++EHAR H Y E + VES TQ++CDLA
Sbjct: 61 SDSIEKIVEIDRHIGCAMSGLTADARSMIEHARTAAVTHNLYYDEDINVESLTQSVCDLA 120
Query: 121 LRFGEGDEESMSRPFGVSLLIAGSD-ENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSL 179
+MSRPFGV+LLIAG D ++G L++ +PSGTF++ NAKAIGSGSEGA + L
Sbjct: 121 AA------AAMSRPFGVALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAEL 174
Query: 180 QEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPT--YHLYTPSEVEAVINRL 237
+++ LTL+EAE + L ILKQVMEEK+ NN ++ + + +Y + +I L
Sbjct: 175 LNEWHSSLTLKEAELLVLKILKQVMEEKLDENNAQLSCITKQDGFKIYDNEKTAELIKEL 234
>pdb|1RYP|E Chain E, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|S Chain S, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|D Chain D, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|R Chain R, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1JD2|D Chain D, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|Y Chain Y, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|2F16|D Chain D, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|R Chain R, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|D Chain D, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|R Chain R, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|D Chain D, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|R Chain R, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|3D29|D Chain D, Proteasome Inhibition By Fellutamide B
pdb|3D29|R Chain R, Proteasome Inhibition By Fellutamide B
pdb|3E47|D Chain D, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|R Chain R, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|D Chain D, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|R Chain R, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|D Chain D, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|R Chain R, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|D Chain D, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|R Chain R, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|D Chain D, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|R Chain R, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|D Chain D, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|R Chain R, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|D Chain D, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|R Chain R, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3MG4|D Chain D, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|R Chain R, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|D Chain D, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|R Chain R, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3OKJ|D Chain D, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|R Chain R, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3TDD|D Chain D, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|R Chain R, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|D Chain D, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|R Chain R, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|4GK7|D Chain D, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|R Chain R, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4FZC|D Chain D, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|R Chain R, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|D Chain D, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|R Chain R, 20s Yeast Proteasome In Complex With Glidobactin
Length = 242
Score = 284 bits (726), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 142/235 (60%), Positives = 177/235 (75%), Gaps = 6/235 (2%)
Query: 9 DRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIM 68
DRGV+TFSPEGRLFQVEY++EAIKLGSTAIG+ TKEGVVL VEKR TSPLLE S+EKI+
Sbjct: 1 DRGVSTFSPEGRLFQVEYSLEAIKLGSTAIGIATKEGVVLGVEKRATSPLLESDSIEKIV 60
Query: 69 EIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGE--- 125
EID HIGCAMSGL ADAR+++EHAR H Y E + VES TQ++CDLALRFGE
Sbjct: 61 EIDRHIGCAMSGLTADARSMIEHARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGAS 120
Query: 126 GDEESMSRPFGVSLLIAGSD-ENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYN 184
G+E MSRPFGV+LLIAG D ++G L++ +PSGTF++ NAKAIGSGSEGA + L +++
Sbjct: 121 GEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAELLNEWH 180
Query: 185 KDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPT--YHLYTPSEVEAVINRL 237
LTL+EAE + L ILKQVMEEK+ NN ++ + + +Y + +I L
Sbjct: 181 SSLTLKEAELLVLKILKQVMEEKLDENNAQLSCITKQDGFKIYDNEKTAELIKEL 235
>pdb|3H4P|A Chain A, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|B Chain B, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|C Chain C, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|D Chain D, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|E Chain E, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|F Chain F, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|G Chain G, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|H Chain H, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|I Chain I, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|J Chain J, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|K Chain K, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|L Chain L, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|M Chain M, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|N Chain N, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
Length = 264
Score = 202 bits (515), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 99/208 (47%), Positives = 142/208 (68%), Gaps = 4/208 (1%)
Query: 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKI 67
YDR + FSPEGRL+QVEYA EA++ G+TAIG+ K+GVVLAV++RITS L++ S+EKI
Sbjct: 12 YDRAITVFSPEGRLYQVEYAREAVRRGTTAIGIACKDGVVLAVDRRITSKLVKIRSIEKI 71
Query: 68 MEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGD 127
+ID+H+ A SGL+ADAR L++ AR+E Q +R +YGE +++E + +CD+ +
Sbjct: 72 FQIDDHVAAATSGLVADARVLIDRARLEAQIYRLTYGEEISIEMLAKKICDIKQAY---T 128
Query: 128 EESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDL 187
+ RPFGVSLLIAG D+N L+ TDPSG + A AIGSG L+++Y D+
Sbjct: 129 QHGGVRPFGVSLLIAGIDKNEARLFETDPSGALIEYKATAIGSGRPVVMELLEKEYRDDI 188
Query: 188 TLQEAETIALSILKQVMEEKVTPNNVDI 215
TL E +A++ L + E+ + P NVD+
Sbjct: 189 TLDEGLELAITALTKANED-IKPENVDV 215
>pdb|1J2P|A Chain A, Alpha-Ring From The Proteasome From Archaeoglobus Fulgidus
pdb|1J2P|B Chain B, Alpha-Ring From The Proteasome From Archaeoglobus Fulgidus
pdb|1J2P|C Chain C, Alpha-Ring From The Proteasome From Archaeoglobus Fulgidus
pdb|1J2P|D Chain D, Alpha-Ring From The Proteasome From Archaeoglobus Fulgidus
pdb|1J2P|E Chain E, Alpha-Ring From The Proteasome From Archaeoglobus Fulgidus
pdb|1J2P|F Chain F, Alpha-Ring From The Proteasome From Archaeoglobus Fulgidus
pdb|1J2P|G Chain G, Alpha-Ring From The Proteasome From Archaeoglobus Fulgidus
Length = 246
Score = 200 bits (509), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 103/239 (43%), Positives = 148/239 (61%), Gaps = 7/239 (2%)
Query: 1 MFLTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLE 60
M L + YDR + FSP+GRLFQVEYA EA+K G+TAIG+K KEGV+L +KR+ S LLE
Sbjct: 1 MHLPQMGYDRAITVFSPDGRLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLLE 60
Query: 61 PSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLA 120
++EKI +IDEHI A SGL+ADAR L++ AR+E Q +R +Y P+TV+ + +CD
Sbjct: 61 KDTIEKIYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDIPITVKELAKKICDFK 120
Query: 121 LRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQ 180
++ + RPFGVSLLIAG +E P LY TDPSG + A AIG G +
Sbjct: 121 QQY---TQYGGVRPFGVSLLIAGVNEV-PKLYETDPSGALLEYKATAIGMGRMAVTEFFE 176
Query: 181 EQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVA---PTYHLYTPSEVEAVINR 236
++Y DL+ +A + L + +E ++ P N+++ V T+ +P E++ + R
Sbjct: 177 KEYRDDLSFDDAMVLGLVAMGLSIESELVPENIEVGYVKVDDRTFKEVSPEELKPYVER 235
>pdb|1J2Q|A Chain A, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|B Chain B, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|C Chain C, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|D Chain D, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|E Chain E, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|F Chain F, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|G Chain G, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
Length = 237
Score = 199 bits (506), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 101/230 (43%), Positives = 144/230 (62%), Gaps = 7/230 (3%)
Query: 10 RGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIME 69
R + FSP+GRLFQVEYA EA+K G+TAIG+K KEGV+L +KR+ S LLE ++EKI +
Sbjct: 1 RAITVFSPDGRLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLLEADTIEKIYK 60
Query: 70 IDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEE 129
IDEHI A SGL+ADAR L++ AR+E Q +R +Y EP+TV+ + +CD ++ +
Sbjct: 61 IDEHICAATSGLVADARVLIDRARIEAQINRLTYDEPITVKELAKKICDFKQQY---TQY 117
Query: 130 SMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTL 189
RPFGVSLLIAG DE P LY TDPSG + A AIG G +++Y DL+
Sbjct: 118 GGVRPFGVSLLIAGVDEV-PKLYETDPSGALLEYKATAIGMGRNAVTEFFEKEYRDDLSF 176
Query: 190 QEAETIALSILKQVMEEKVTPNNVDIARVA---PTYHLYTPSEVEAVINR 236
+A + L + +E ++ P N+++ V T+ +P E++ + R
Sbjct: 177 DDAMVLGLVAMGLSIESELVPENIEVGYVKVDDRTFKEVSPEELKPYVER 226
>pdb|1PMA|A Chain A, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|C Chain C, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|D Chain D, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|E Chain E, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|F Chain F, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|G Chain G, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|H Chain H, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|I Chain I, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|J Chain J, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|K Chain K, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|L Chain L, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|M Chain M, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|N Chain N, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|O Chain O, Proteasome From Thermoplasma Acidophilum
pdb|1YA7|A Chain A, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|B Chain B, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|C Chain C, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|D Chain D, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|E Chain E, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|F Chain F, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|G Chain G, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|3C91|A Chain A, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|B Chain B, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|C Chain C, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|D Chain D, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|E Chain E, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|F Chain F, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|G Chain G, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|O Chain O, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|P Chain P, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|Q Chain Q, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|R Chain R, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|S Chain S, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|T Chain T, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|U Chain U, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C92|A Chain A, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|B Chain B, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|C Chain C, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|D Chain D, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|E Chain E, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|F Chain F, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|G Chain G, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|O Chain O, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|P Chain P, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|Q Chain Q, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|R Chain R, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|S Chain S, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|T Chain T, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|U Chain U, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3IPM|A Chain A, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|B Chain B, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|C Chain C, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|D Chain D, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|E Chain E, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|F Chain F, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|G Chain G, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
Length = 233
Score = 177 bits (449), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 93/229 (40%), Positives = 140/229 (61%), Gaps = 5/229 (2%)
Query: 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKI 67
YDR + FSP+GRLFQVEYA EA+K GSTA+G+K GV+L +K++ S L+E +S+EKI
Sbjct: 8 YDRAITVFSPDGRLFQVEYAREAVKKGSTALGMKFANGVLLISDKKVRSRLIEQNSIEKI 67
Query: 68 MEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGD 127
ID+++ SGL+ADAR LV+ AR+ Q + +YG + +E+ + + D ++
Sbjct: 68 QLIDDYVAAVTSGLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQY---T 124
Query: 128 EESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDL 187
+ RP+GVSL+ AG D+ GP L+ DP+GT + A AIGSG + S L+ +Y ++L
Sbjct: 125 QYGGVRPYGVSLIFAGIDQIGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENL 184
Query: 188 TLQEAETIALSILKQVMEEKVTPNNVDIAR--VAPTYHLYTPSEVEAVI 234
+EA T+ + LK +EE +IA V Y +Y EV+ +
Sbjct: 185 PEKEAVTLGIKALKSSLEEGEELKAPEIASITVGNKYRIYDQEEVKKFL 233
>pdb|2KU1|A Chain A, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU1|B Chain B, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU1|C Chain C, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU1|D Chain D, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU1|E Chain E, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU1|F Chain F, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU1|G Chain G, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
Length = 237
Score = 177 bits (448), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 93/229 (40%), Positives = 140/229 (61%), Gaps = 5/229 (2%)
Query: 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKI 67
YDR + FSP+GRLFQVEYA EA+K GSTA+G+K GV+L +K++ S L+E +S+EKI
Sbjct: 12 YDRAITVFSPDGRLFQVEYAREAVKKGSTALGMKFANGVLLISDKKVRSRLIEQNSIEKI 71
Query: 68 MEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGD 127
ID+++ SGL+ADAR LV+ AR+ Q + +YG + +E+ + + D ++
Sbjct: 72 QLIDDYVAAVTSGLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQY---T 128
Query: 128 EESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDL 187
+ RP+GVSL+ AG D+ GP L+ DP+GT + A AIGSG + S L+ +Y ++L
Sbjct: 129 QYGGVRPYGVSLIFAGIDQIGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENL 188
Query: 188 TLQEAETIALSILKQVMEEKVTPNNVDIAR--VAPTYHLYTPSEVEAVI 234
+EA T+ + LK +EE +IA V Y +Y EV+ +
Sbjct: 189 PEKEAVTLGIKALKSSLEEGEELKAPEIASITVGNKYRIYDQEEVKKFL 237
>pdb|3JRM|A Chain A, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|B Chain B, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|C Chain C, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|D Chain D, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|E Chain E, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|F Chain F, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|G Chain G, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|A Chain A, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|B Chain B, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|C Chain C, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|D Chain D, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|E Chain E, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|F Chain F, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|G Chain G, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|A Chain A, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|B Chain B, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|C Chain C, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|D Chain D, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|E Chain E, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|F Chain F, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|G Chain G, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
Length = 227
Score = 177 bits (448), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 93/229 (40%), Positives = 140/229 (61%), Gaps = 5/229 (2%)
Query: 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKI 67
YDR + FSP+GRLFQVEYA EA+K GSTA+G+K GV+L +K++ S L+E +S+EKI
Sbjct: 2 YDRAITVFSPDGRLFQVEYAREAVKKGSTALGMKFANGVLLISDKKVRSRLIEQNSIEKI 61
Query: 68 MEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGD 127
ID+++ SGL+ADAR LV+ AR+ Q + +YG + +E+ + + D ++
Sbjct: 62 QLIDDYVAAVTSGLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQY---T 118
Query: 128 EESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDL 187
+ RP+GVSL+ AG D+ GP L+ DP+GT + A AIGSG + S L+ +Y ++L
Sbjct: 119 QYGGVRPYGVSLIFAGIDQIGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENL 178
Query: 188 TLQEAETIALSILKQVMEEKVTPNNVDIAR--VAPTYHLYTPSEVEAVI 234
+EA T+ + LK +EE +IA V Y +Y EV+ +
Sbjct: 179 PEKEAVTLGIKALKSSLEEGEELKAPEIASITVGNKYRIYDQEEVKKFL 227
>pdb|1YAR|A Chain A, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|B Chain B, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|C Chain C, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|D Chain D, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|E Chain E, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|F Chain F, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|G Chain G, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
Length = 233
Score = 174 bits (442), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 92/229 (40%), Positives = 139/229 (60%), Gaps = 5/229 (2%)
Query: 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKI 67
Y R + FSP+GRLFQVEYA EA+K GSTA+G+K GV+L +K++ S L+E +S+EKI
Sbjct: 8 YSRAITVFSPDGRLFQVEYAREAVKKGSTALGMKFANGVLLISDKKVRSRLIEQNSIEKI 67
Query: 68 MEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGD 127
ID+++ SGL+ADAR LV+ AR+ Q + +YG + +E+ + + D ++
Sbjct: 68 QLIDDYVAAVTSGLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQY---T 124
Query: 128 EESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDL 187
+ RP+GVSL+ AG D+ GP L+ DP+GT + A AIGSG + S L+ +Y ++L
Sbjct: 125 QYGGVRPYGVSLIFAGIDQIGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENL 184
Query: 188 TLQEAETIALSILKQVMEEKVTPNNVDIAR--VAPTYHLYTPSEVEAVI 234
+EA T+ + LK +EE +IA V Y +Y EV+ +
Sbjct: 185 PEKEAVTLGIKALKSSLEEGEELKAPEIASITVGNKYRIYDQEEVKKFL 233
>pdb|1YAU|A Chain A, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|B Chain B, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|C Chain C, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|D Chain D, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|E Chain E, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|F Chain F, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|G Chain G, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
Length = 233
Score = 172 bits (435), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 91/227 (40%), Positives = 138/227 (60%), Gaps = 5/227 (2%)
Query: 10 RGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIME 69
R + FSP+GRLFQVEYA EA+K GSTA+G+K GV+L +K++ S L+E +S+EKI
Sbjct: 10 RAITVFSPDGRLFQVEYAREAVKKGSTALGMKFANGVLLISDKKVRSRLIEQNSIEKIQL 69
Query: 70 IDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEE 129
ID+++ SGL+ADAR LV+ AR+ Q + +YG + +E+ + + D ++ +
Sbjct: 70 IDDYVAAVTSGLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQY---TQY 126
Query: 130 SMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTL 189
RP+GVSL+ AG D+ GP L+ DP+GT + A AIGSG + S L+ +Y ++L
Sbjct: 127 GGVRPYGVSLIFAGIDQIGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENLPE 186
Query: 190 QEAETIALSILKQVMEEKVTPNNVDIAR--VAPTYHLYTPSEVEAVI 234
+EA T+ + LK +EE +IA V Y +Y EV+ +
Sbjct: 187 KEAVTLGIKALKSSLEEGEELKAPEIASITVGNKYRIYDQEEVKKFL 233
>pdb|2KU2|A Chain A, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU2|B Chain B, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU2|C Chain C, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU2|D Chain D, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU2|E Chain E, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU2|F Chain F, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU2|G Chain G, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
Length = 237
Score = 171 bits (434), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 91/227 (40%), Positives = 138/227 (60%), Gaps = 5/227 (2%)
Query: 10 RGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIME 69
R + FSP+GRLFQVEYA EA+K GSTA+G+K GV+L +K++ S L+E +S+EKI
Sbjct: 14 RAITVFSPDGRLFQVEYAREAVKKGSTALGMKFANGVLLISDKKVRSRLIEQNSIEKIQL 73
Query: 70 IDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEE 129
ID+++ SGL+ADAR LV+ AR+ Q + +YG + +E+ + + D ++ +
Sbjct: 74 IDDYVAAVTSGLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQY---TQY 130
Query: 130 SMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTL 189
RP+GVSL+ AG D+ GP L+ DP+GT + A AIGSG + S L+ +Y ++L
Sbjct: 131 GGVRPYGVSLIFAGIDQIGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENLPE 190
Query: 190 QEAETIALSILKQVMEEKVTPNNVDIAR--VAPTYHLYTPSEVEAVI 234
+EA T+ + LK +EE +IA V Y +Y EV+ +
Sbjct: 191 KEAVTLGIKALKSSLEEGEELKAPEIASITVGNKYRIYDQEEVKKFL 237
>pdb|3UNE|C Chain C, Mouse Constitutive 20s Proteasome
pdb|3UNE|Q Chain Q, Mouse Constitutive 20s Proteasome
pdb|3UNE|EE Chain e, Mouse Constitutive 20s Proteasome
pdb|3UNE|SS Chain s, Mouse Constitutive 20s Proteasome
pdb|3UNF|C Chain C, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|Q Chain Q, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|C Chain C, Mouse 20s Immunoproteasome
pdb|3UNH|Q Chain Q, Mouse 20s Immunoproteasome
Length = 248
Score = 166 bits (419), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 93/231 (40%), Positives = 139/231 (60%), Gaps = 8/231 (3%)
Query: 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKI 67
YDR + FSP+G LFQVEYA EA+K GSTA+G++ K+ VVL VEK+ + L + +V KI
Sbjct: 3 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGKDIVVLGVEKKSVAKLQDERTVRKI 62
Query: 68 MEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGD 127
+D+++ A +GL ADAR ++ ARVE Q+HR + +P+TVE T+ + L R+ + +
Sbjct: 63 CALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSN 122
Query: 128 EESMSRPFGVSLLIAGSDENG-PSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKD 186
RPFG+S LI G D +G P LY TDPSGT+ A AIG G++ L++ Y D
Sbjct: 123 GR---RPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDD 179
Query: 187 LTLQEAETIALSILKQVME-EKVTPNNVDIA--RVAPTYHLYTPSEVEAVI 234
+ TI L ++K ++E + N+++A R + P E+E +
Sbjct: 180 AIETDDLTIKL-VIKALLEVVQSGGKNIELAVMRRDQPLKILNPEEIEKYV 229
>pdb|1IRU|D Chain D, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|R Chain R, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 248
Score = 164 bits (415), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 91/231 (39%), Positives = 140/231 (60%), Gaps = 8/231 (3%)
Query: 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKI 67
YDR + FSP+G LFQVEYA EA+K GSTA+G++ ++ VVL VEK+ + L + +V KI
Sbjct: 3 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVAKLQDERTVRKI 62
Query: 68 MEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGD 127
+D+++ A +GL ADAR ++ ARVE Q+HR + +P+TVE T+ + L R+ + +
Sbjct: 63 CALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSN 122
Query: 128 EESMSRPFGVSLLIAGSDENG-PSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKD 186
RPFG+S LI G D +G P LY TDPSGT+ A AIG G++ L++ Y +
Sbjct: 123 GR---RPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDE 179
Query: 187 LTLQEAETIALSILKQVME-EKVTPNNVDIA--RVAPTYHLYTPSEVEAVI 234
+ TI L ++K ++E + N+++A R + + P E+E +
Sbjct: 180 AIETDDLTIKL-VIKALLEVVQSGGKNIELAVMRRDQSLKILNPEEIEKYV 229
>pdb|3UNB|C Chain C, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|Q Chain Q, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|EE Chain e, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|SS Chain s, Mouse Constitutive 20s Proteasome In Complex With Pr-957
Length = 248
Score = 164 bits (414), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 92/231 (39%), Positives = 138/231 (59%), Gaps = 8/231 (3%)
Query: 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKI 67
YDR + FSP+G LFQVEYA EA+K GSTA+G++ K+ VVL V K+ + L + +V KI
Sbjct: 3 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGKDIVVLGVAKKSVAKLQDERTVRKI 62
Query: 68 MEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGD 127
+D+++ A +GL ADAR ++ ARVE Q+HR + +P+TVE T+ + L R+ + +
Sbjct: 63 CALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSN 122
Query: 128 EESMSRPFGVSLLIAGSDENG-PSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKD 186
RPFG+S LI G D +G P LY TDPSGT+ A AIG G++ L++ Y D
Sbjct: 123 GR---RPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDD 179
Query: 187 LTLQEAETIALSILKQVME-EKVTPNNVDIA--RVAPTYHLYTPSEVEAVI 234
+ TI L ++K ++E + N+++A R + P E+E +
Sbjct: 180 AIETDDLTIKL-VIKALLEVVQSGGKNIELAVMRRDQPLKILNPEEIEKYV 229
>pdb|1G0U|C Chain C, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|Q Chain Q, A Gated Channel Into The Proteasome Core Particle
pdb|3MG6|C Chain C, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|Q Chain Q, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|C Chain C, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|Q Chain Q, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|C Chain C, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|Q Chain Q, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
Length = 243
Score = 148 bits (374), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 88/222 (39%), Positives = 132/222 (59%), Gaps = 17/222 (7%)
Query: 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPL----LEPSS 63
YDR ++ FSP+G +FQVEYA+EA+K G+ A+G+K K VVL E+R T L + PS
Sbjct: 4 YDRALSIFSPDGHIFQVEYALEAVKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSK 63
Query: 64 VEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRF 123
V K ID H+ + SGL AD+R L+E ARVE Q+HR + +P+TVE T+ + + R+
Sbjct: 64 VSK---IDSHVVLSFSGLNADSRILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRY 120
Query: 124 GEGDEESMSRPFGVSLLIAGSD--ENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQE 181
+ RPFGVS LIAG D ++ P LY T+PSG + +A+ IG S+ L++
Sbjct: 121 TQS---GGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIYSSWSAQTIGRNSKTVREFLEK 177
Query: 182 QYNKD---LTLQEAETIALSILKQVMEEKVTPNNVDIARVAP 220
Y++ T++E + + L +V++ N++I V P
Sbjct: 178 NYDRKEPPATVEECVKLTVRSLLEVVQ--TGAKNIEITVVKP 217
>pdb|1RYP|D Chain D, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|R Chain R, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|C Chain C, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|Q Chain Q, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1JD2|C Chain C, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|X Chain X, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|2F16|C Chain C, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|Q Chain Q, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|C Chain C, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|Q Chain Q, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|C Chain C, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|Q Chain Q, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|3D29|C Chain C, Proteasome Inhibition By Fellutamide B
pdb|3D29|Q Chain Q, Proteasome Inhibition By Fellutamide B
pdb|3E47|C Chain C, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|Q Chain Q, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|C Chain C, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|Q Chain Q, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|C Chain C, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|Q Chain Q, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|C Chain C, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|Q Chain Q, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|C Chain C, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|Q Chain Q, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|C Chain C, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|Q Chain Q, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|C Chain C, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|Q Chain Q, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3MG4|C Chain C, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|Q Chain Q, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|C Chain C, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|Q Chain Q, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3OKJ|C Chain C, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|Q Chain Q, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OEU|C Chain C, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|Q Chain Q, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|C Chain C, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|Q Chain Q, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3TDD|C Chain C, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|Q Chain Q, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|C Chain C, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|Q Chain Q, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SDI|C Chain C, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|Q Chain Q, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|C Chain C, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|Q Chain Q, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|4GK7|C Chain C, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|Q Chain Q, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4FZC|C Chain C, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|Q Chain Q, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|C Chain C, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|Q Chain Q, 20s Yeast Proteasome In Complex With Glidobactin
Length = 241
Score = 148 bits (374), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 88/222 (39%), Positives = 132/222 (59%), Gaps = 17/222 (7%)
Query: 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPL----LEPSS 63
YDR ++ FSP+G +FQVEYA+EA+K G+ A+G+K K VVL E+R T L + PS
Sbjct: 2 YDRALSIFSPDGHIFQVEYALEAVKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSK 61
Query: 64 VEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRF 123
V K ID H+ + SGL AD+R L+E ARVE Q+HR + +P+TVE T+ + + R+
Sbjct: 62 VSK---IDSHVVLSFSGLNADSRILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRY 118
Query: 124 GEGDEESMSRPFGVSLLIAGSD--ENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQE 181
+ RPFGVS LIAG D ++ P LY T+PSG + +A+ IG S+ L++
Sbjct: 119 TQS---GGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIYSSWSAQTIGRNSKTVREFLEK 175
Query: 182 QYNKD---LTLQEAETIALSILKQVMEEKVTPNNVDIARVAP 220
Y++ T++E + + L +V++ N++I V P
Sbjct: 176 NYDRKEPPATVEECVKLTVRSLLEVVQ--TGAKNIEITVVKP 215
>pdb|1FNT|D Chain D, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|R Chain R, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|D Chain D, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|R Chain R, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2ZCY|C Chain C, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|Q Chain Q, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|C Chain C, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|Q Chain Q, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3NZJ|C Chain C, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|Q Chain Q, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|C Chain C, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|Q Chain Q, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|C Chain C, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|Q Chain Q, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3UN4|C Chain C, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|Q Chain Q, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|C Chain C, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|Q Chain Q, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|4B4T|D Chain D, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
pdb|4G4S|D Chain D, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4INR|C Chain C, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|Q Chain Q, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|C Chain C, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|Q Chain Q, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|C Chain C, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|Q Chain Q, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 254
Score = 148 bits (374), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 88/222 (39%), Positives = 132/222 (59%), Gaps = 17/222 (7%)
Query: 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPL----LEPSS 63
YDR ++ FSP+G +FQVEYA+EA+K G+ A+G+K K VVL E+R T L + PS
Sbjct: 4 YDRALSIFSPDGHIFQVEYALEAVKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSK 63
Query: 64 VEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRF 123
V K ID H+ + SGL AD+R L+E ARVE Q+HR + +P+TVE T+ + + R+
Sbjct: 64 VSK---IDSHVVLSFSGLNADSRILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRY 120
Query: 124 GEGDEESMSRPFGVSLLIAGSD--ENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQE 181
+ RPFGVS LIAG D ++ P LY T+PSG + +A+ IG S+ L++
Sbjct: 121 TQS---GGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIYSSWSAQTIGRNSKTVREFLEK 177
Query: 182 QYNKD---LTLQEAETIALSILKQVMEEKVTPNNVDIARVAP 220
Y++ T++E + + L +V++ N++I V P
Sbjct: 178 NYDRKEPPATVEECVKLTVRSLLEVVQ--TGAKNIEITVVKP 217
>pdb|3UNB|A Chain A, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|O Chain O, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|CC Chain c, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|QQ Chain q, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|A Chain A, Mouse Constitutive 20s Proteasome
pdb|3UNE|O Chain O, Mouse Constitutive 20s Proteasome
pdb|3UNE|CC Chain c, Mouse Constitutive 20s Proteasome
pdb|3UNE|QQ Chain q, Mouse Constitutive 20s Proteasome
pdb|3UNF|A Chain A, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|O Chain O, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|A Chain A, Mouse 20s Immunoproteasome
pdb|3UNH|O Chain O, Mouse 20s Immunoproteasome
Length = 234
Score = 147 bits (371), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 84/229 (36%), Positives = 128/229 (55%), Gaps = 4/229 (1%)
Query: 3 LTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPS 62
+ + Y + TFSP G+L Q+EYA+ A+ G+ ++G+K GVVLA EK+ S L +
Sbjct: 1 MAKRGYSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDER 60
Query: 63 SVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALR 122
SV K+ I +HIG SG+ D R LV AR Q + Y EP+ T Q + +A
Sbjct: 61 SVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPI---PTAQLVQRVASV 117
Query: 123 FGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQ 182
E + RPFGVSLLI G +E P L+ +DPSG ++ A A+G + L+++
Sbjct: 118 MQEYTQSGGVRPFGVSLLICGWNEGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKR 177
Query: 183 YNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPT-YHLYTPSEV 230
YN+DL L++A A+ LK+ E ++T +N+++ + TP+EV
Sbjct: 178 YNEDLELEDAIHTAILTLKESFEGQMTEDNIEVGICNEAGFRRLTPTEV 226
>pdb|1IRU|B Chain B, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|P Chain P, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 233
Score = 147 bits (371), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 84/225 (37%), Positives = 127/225 (56%), Gaps = 4/225 (1%)
Query: 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKI 67
Y + TFSP G+L Q+EYA+ A+ G+ ++G+K GVVLA EK+ S L + SV K+
Sbjct: 5 YSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDERSVHKV 64
Query: 68 MEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGD 127
I +HIG SG+ D R LV AR Q + Y EP+ T Q + +A E
Sbjct: 65 EPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPI---PTAQLVQRVASVMQEYT 121
Query: 128 EESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDL 187
+ RPFGVSLLI G +E P L+ +DPSG ++ A A+G + L+++YN+DL
Sbjct: 122 QSGGVRPFGVSLLICGWNEGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDL 181
Query: 188 TLQEAETIALSILKQVMEEKVTPNNVDIARVAPT-YHLYTPSEVE 231
L++A A+ LK+ E ++T +N+++ + TP+EV+
Sbjct: 182 ELEDAIHTAILTLKESFEGQMTEDNIEVGICNEAGFRRLTPTEVK 226
>pdb|1G0U|B Chain B, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|P Chain P, A Gated Channel Into The Proteasome Core Particle
pdb|1FNT|C Chain C, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|Q Chain Q, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|3MG6|B Chain B, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|P Chain P, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|B Chain B, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|P Chain P, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|B Chain B, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|P Chain P, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
Length = 245
Score = 144 bits (362), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 77/200 (38%), Positives = 119/200 (59%), Gaps = 5/200 (2%)
Query: 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLE-PSSVEK 66
YD FSPEGRL+QVEYA+E+I TAIG+ +G+VLA E+++TS LLE +S EK
Sbjct: 6 YDSRTTIFSPEGRLYQVEYALESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEK 65
Query: 67 IMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEG 126
+ ++++ I A++GL ADA L+ AR+ QN+ +Y E + VE + L D+ +
Sbjct: 66 LYKLNDKIAVAVAGLTADAEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGY--- 122
Query: 127 DEESMSRPFGVSLLIAGSDEN-GPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNK 185
+ RPFGVS + AG D+ G LY ++PSG + A ++G+ + A + LQ Y
Sbjct: 123 TQHGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMDYKD 182
Query: 186 DLTLQEAETIALSILKQVME 205
D+ + +A +AL L + +
Sbjct: 183 DMKVDDAIELALKTLSKTTD 202
>pdb|1RYP|C Chain C, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|Q Chain Q, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|B Chain B, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|P Chain P, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1JD2|B Chain B, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|W Chain W, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|2F16|B Chain B, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|P Chain P, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|B Chain B, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|P Chain P, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|B Chain B, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|P Chain P, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|3D29|B Chain B, Proteasome Inhibition By Fellutamide B
pdb|3D29|P Chain P, Proteasome Inhibition By Fellutamide B
pdb|3E47|B Chain B, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|P Chain P, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|B Chain B, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|P Chain P, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|B Chain B, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|P Chain P, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|B Chain B, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|P Chain P, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|B Chain B, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|P Chain P, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|B Chain B, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|P Chain P, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|B Chain B, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|P Chain P, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3MG4|B Chain B, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|P Chain P, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|B Chain B, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|P Chain P, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3OKJ|B Chain B, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|P Chain P, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3TDD|B Chain B, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|P Chain P, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|B Chain B, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|P Chain P, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|4GK7|B Chain B, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|P Chain P, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4FZC|B Chain B, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|P Chain P, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|B Chain B, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|P Chain P, 20s Yeast Proteasome In Complex With Glidobactin
Length = 244
Score = 143 bits (361), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 77/200 (38%), Positives = 119/200 (59%), Gaps = 5/200 (2%)
Query: 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLE-PSSVEK 66
YD FSPEGRL+QVEYA+E+I TAIG+ +G+VLA E+++TS LLE +S EK
Sbjct: 5 YDSRTTIFSPEGRLYQVEYALESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEK 64
Query: 67 IMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEG 126
+ ++++ I A++GL ADA L+ AR+ QN+ +Y E + VE + L D+ +
Sbjct: 65 LYKLNDKIAVAVAGLTADAEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGY--- 121
Query: 127 DEESMSRPFGVSLLIAGSDEN-GPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNK 185
+ RPFGVS + AG D+ G LY ++PSG + A ++G+ + A + LQ Y
Sbjct: 122 TQHGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMDYKD 181
Query: 186 DLTLQEAETIALSILKQVME 205
D+ + +A +AL L + +
Sbjct: 182 DMKVDDAIELALKTLSKTTD 201
>pdb|1Z7Q|C Chain C, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|Q Chain Q, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2ZCY|B Chain B, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|P Chain P, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|B Chain B, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|P Chain P, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3NZJ|B Chain B, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|P Chain P, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|B Chain B, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|P Chain P, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|B Chain B, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|P Chain P, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3UN4|B Chain B, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|P Chain P, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|B Chain B, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|P Chain P, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|4B4T|C Chain C, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
pdb|4G4S|C Chain C, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4INR|B Chain B, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|P Chain P, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|B Chain B, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|P Chain P, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|B Chain B, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|P Chain P, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 258
Score = 143 bits (361), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 77/200 (38%), Positives = 119/200 (59%), Gaps = 5/200 (2%)
Query: 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLE-PSSVEK 66
YD FSPEGRL+QVEYA+E+I TAIG+ +G+VLA E+++TS LLE +S EK
Sbjct: 6 YDSRTTIFSPEGRLYQVEYALESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEK 65
Query: 67 IMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEG 126
+ ++++ I A++GL ADA L+ AR+ QN+ +Y E + VE + L D+ +
Sbjct: 66 LYKLNDKIAVAVAGLTADAEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGY--- 122
Query: 127 DEESMSRPFGVSLLIAGSDEN-GPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNK 185
+ RPFGVS + AG D+ G LY ++PSG + A ++G+ + A + LQ Y
Sbjct: 123 TQHGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMDYKD 182
Query: 186 DLTLQEAETIALSILKQVME 205
D+ + +A +AL L + +
Sbjct: 183 DMKVDDAIELALKTLSKTTD 202
>pdb|1G0U|F Chain F, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|T Chain T, A Gated Channel Into The Proteasome Core Particle
pdb|3MG6|F Chain F, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|T Chain T, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|F Chain F, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|T Chain T, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|F Chain F, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|T Chain T, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
Length = 248
Score = 143 bits (360), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 82/208 (39%), Positives = 116/208 (55%), Gaps = 14/208 (6%)
Query: 6 TEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVE 65
T YD + FSP+GR FQVEYA++A++ G+T+IG+K +GVV AVEK ITS LL P
Sbjct: 6 TGYDLSNSVFSPDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNV 65
Query: 66 KIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGE 125
KI +D HIGC SGLI D R LV R E + + Y P+ + + A R G+
Sbjct: 66 KIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPA-------FADRLGQ 118
Query: 126 GDEE----SMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQ- 180
+ + RPFGVS + G D+NG LY +PSG++W A G G + A + L+
Sbjct: 119 YVQAHTLYNSVRPFGVSTIFGGVDKNGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEK 178
Query: 181 --EQYNKDLTLQEAETIALSILKQVMEE 206
+ + + L+ +EA A I+ E+
Sbjct: 179 LVDHHPEGLSAREAVKQAAKIIYLAHED 206
>pdb|1FNT|G Chain G, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|U Chain U, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2ZCY|F Chain F, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|T Chain T, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|F Chain F, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|T Chain T, Yeast 20s Proteasome:glidobactin A-Complex
Length = 287
Score = 143 bits (360), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 82/208 (39%), Positives = 116/208 (55%), Gaps = 14/208 (6%)
Query: 6 TEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVE 65
T YD + FSP+GR FQVEYA++A++ G+T+IG+K +GVV AVEK ITS LL P
Sbjct: 5 TGYDLSNSVFSPDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNV 64
Query: 66 KIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGE 125
KI +D HIGC SGLI D R LV R E + + Y P+ + + A R G+
Sbjct: 65 KIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPA-------FADRLGQ 117
Query: 126 GDEE----SMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQ- 180
+ + RPFGVS + G D+NG LY +PSG++W A G G + A + L+
Sbjct: 118 YVQAHTLYNSVRPFGVSTIFGGVDKNGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEK 177
Query: 181 --EQYNKDLTLQEAETIALSILKQVMEE 206
+ + + L+ +EA A I+ E+
Sbjct: 178 LVDHHPEGLSAREAVKQAAKIIYLAHED 205
>pdb|1Z7Q|G Chain G, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|U Chain U, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|3NZJ|F Chain F, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|T Chain T, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|F Chain F, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|T Chain T, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|F Chain F, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|T Chain T, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3UN4|F Chain F, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|T Chain T, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|F Chain F, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|T Chain T, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|4B4T|G Chain G, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
pdb|4G4S|G Chain G, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4INR|F Chain F, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|T Chain T, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|F Chain F, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|T Chain T, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|F Chain F, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|T Chain T, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 288
Score = 143 bits (360), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 82/208 (39%), Positives = 116/208 (55%), Gaps = 14/208 (6%)
Query: 6 TEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVE 65
T YD + FSP+GR FQVEYA++A++ G+T+IG+K +GVV AVEK ITS LL P
Sbjct: 6 TGYDLSNSVFSPDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNV 65
Query: 66 KIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGE 125
KI +D HIGC SGLI D R LV R E + + Y P+ + + A R G+
Sbjct: 66 KIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPA-------FADRLGQ 118
Query: 126 GDEE----SMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQ- 180
+ + RPFGVS + G D+NG LY +PSG++W A G G + A + L+
Sbjct: 119 YVQAHTLYNSVRPFGVSTIFGGVDKNGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEK 178
Query: 181 --EQYNKDLTLQEAETIALSILKQVMEE 206
+ + + L+ +EA A I+ E+
Sbjct: 179 LVDHHPEGLSAREAVKQAAKIIYLAHED 206
>pdb|1RYP|G Chain G, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|U Chain U, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|F Chain F, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|T Chain T, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1JD2|F Chain F, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|1 Chain 1, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|2F16|F Chain F, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|T Chain T, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|F Chain F, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|T Chain T, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|F Chain F, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|T Chain T, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|3D29|F Chain F, Proteasome Inhibition By Fellutamide B
pdb|3D29|T Chain T, Proteasome Inhibition By Fellutamide B
pdb|3E47|F Chain F, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|T Chain T, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|F Chain F, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|T Chain T, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|F Chain F, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|T Chain T, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|F Chain F, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|T Chain T, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|F Chain F, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|T Chain T, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|F Chain F, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|T Chain T, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|F Chain F, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|T Chain T, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|1VSY|G Chain G, Proteasome Activator Complex
pdb|1VSY|U Chain U, Proteasome Activator Complex
pdb|3L5Q|L Chain L, Proteasome Activator Complex
pdb|3L5Q|X Chain X, Proteasome Activator Complex
pdb|3MG4|F Chain F, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|T Chain T, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|F Chain F, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|T Chain T, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3OKJ|F Chain F, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|T Chain T, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3TDD|F Chain F, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|T Chain T, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|F Chain F, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|T Chain T, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|4GK7|F Chain F, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|T Chain T, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4FZC|F Chain F, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|T Chain T, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|F Chain F, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|T Chain T, 20s Yeast Proteasome In Complex With Glidobactin
Length = 244
Score = 142 bits (359), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 82/208 (39%), Positives = 116/208 (55%), Gaps = 14/208 (6%)
Query: 6 TEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVE 65
T YD + FSP+GR FQVEYA++A++ G+T+IG+K +GVV AVEK ITS LL P
Sbjct: 2 TGYDLSNSVFSPDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNV 61
Query: 66 KIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGE 125
KI +D HIGC SGLI D R LV R E + + Y P+ + + A R G+
Sbjct: 62 KIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPA-------FADRLGQ 114
Query: 126 GDEE----SMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQ- 180
+ + RPFGVS + G D+NG LY +PSG++W A G G + A + L+
Sbjct: 115 YVQAHTLYNSVRPFGVSTIFGGVDKNGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEK 174
Query: 181 --EQYNKDLTLQEAETIALSILKQVMEE 206
+ + + L+ +EA A I+ E+
Sbjct: 175 LVDHHPEGLSAREAVKQAAKIIYLAHED 202
>pdb|3OEU|F Chain F, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|T Chain T, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|F Chain F, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|T Chain T, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3SDI|F Chain F, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|T Chain T, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|F Chain F, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|T Chain T, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
Length = 242
Score = 142 bits (357), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 81/206 (39%), Positives = 115/206 (55%), Gaps = 14/206 (6%)
Query: 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKI 67
YD + FSP+GR FQVEYA++A++ G+T+IG+K +GVV AVEK ITS LL P KI
Sbjct: 2 YDLSNSVFSPDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNVKI 61
Query: 68 MEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGD 127
+D HIGC SGLI D R LV R E + + Y P+ + + A R G+
Sbjct: 62 QVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPA-------FADRLGQYV 114
Query: 128 EE----SMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQ--- 180
+ + RPFGVS + G D+NG LY +PSG++W A G G + A + L+
Sbjct: 115 QAHTLYNSVRPFGVSTIFGGVDKNGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLV 174
Query: 181 EQYNKDLTLQEAETIALSILKQVMEE 206
+ + + L+ +EA A I+ E+
Sbjct: 175 DHHPEGLSAREAVKQAAKIIYLAHED 200
>pdb|1RYP|B Chain B, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|P Chain P, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|A Chain A, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|O Chain O, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G0U|A Chain A, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|O Chain O, A Gated Channel Into The Proteasome Core Particle
pdb|1FNT|B Chain B, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|P Chain P, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1JD2|A Chain A, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|V Chain V, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1Z7Q|B Chain B, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|P Chain P, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2F16|A Chain A, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|O Chain O, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|A Chain A, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|O Chain O, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|A Chain A, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|O Chain O, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2ZCY|A Chain A, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|O Chain O, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|A Chain A, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|O Chain O, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3D29|A Chain A, Proteasome Inhibition By Fellutamide B
pdb|3D29|O Chain O, Proteasome Inhibition By Fellutamide B
pdb|3E47|A Chain A, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|O Chain O, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|A Chain A, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|O Chain O, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|A Chain A, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|O Chain O, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|A Chain A, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|O Chain O, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|A Chain A, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|O Chain O, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|A Chain A, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|O Chain O, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|A Chain A, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|O Chain O, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3NZJ|A Chain A, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|O Chain O, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|A Chain A, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|O Chain O, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|A Chain A, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|O Chain O, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3MG4|A Chain A, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|O Chain O, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|A Chain A, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|O Chain O, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG6|A Chain A, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|O Chain O, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|A Chain A, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|O Chain O, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|A Chain A, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|O Chain O, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3OKJ|A Chain A, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|O Chain O, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OEU|A Chain A, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|O Chain O, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|A Chain A, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|O Chain O, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3TDD|A Chain A, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|O Chain O, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|A Chain A, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|O Chain O, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3UN4|A Chain A, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|O Chain O, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|A Chain A, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|O Chain O, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3SDI|A Chain A, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|O Chain O, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|A Chain A, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|O Chain O, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|4GK7|A Chain A, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|O Chain O, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4B4T|B Chain B, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
pdb|4G4S|B Chain B, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4FZC|A Chain A, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|O Chain O, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|A Chain A, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|O Chain O, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4INR|A Chain A, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|O Chain O, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|A Chain A, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|O Chain O, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|A Chain A, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|O Chain O, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 250
Score = 142 bits (357), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 83/214 (38%), Positives = 128/214 (59%), Gaps = 5/214 (2%)
Query: 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKI 67
Y + TFSP G+L Q++YA+ A+K G T++G+K GVV+A EK+ +SPL ++ K+
Sbjct: 5 YSFSLTTFSPSGKLGQIDYALTAVKQGVTSLGIKATNGVVIATEKKSSSPLAMSETLSKV 64
Query: 68 MEIDEHIGCAMSGLIADARTLVEHAR-VETQNHRFSYGEPMTVESTTQALCDLALRFGEG 126
+ IG SG+ D R LV+ +R V +++ YGE T + ++A E
Sbjct: 65 SLLTPDIGAVYSGMGPDYRVLVDKSRKVAHTSYKRIYGE---YPPTKLLVSEVAKIMQEA 121
Query: 127 DEESMSRPFGVSLLIAGSDE-NGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNK 185
+ RPFGVSLLIAG DE NG SLY DPSG+++ A AIG GS A + L++++N
Sbjct: 122 TQSGGVRPFGVSLLIAGHDEFNGFSLYQVDPSGSYFPWKATAIGKGSVAAKTFLEKRWND 181
Query: 186 DLTLQEAETIALSILKQVMEEKVTPNNVDIARVA 219
+L L++A IAL LK+ +E + + +++A +
Sbjct: 182 ELELEDAIHIALLTLKESVEGEFNGDTIELAIIG 215
>pdb|1IRU|C Chain C, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|Q Chain Q, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 261
Score = 140 bits (354), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 82/213 (38%), Positives = 124/213 (58%), Gaps = 7/213 (3%)
Query: 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLL-EPSSVEK 66
YD FSPEGRL+QVEYA+EAI T +G+ +GV+LA E+R LL E EK
Sbjct: 5 YDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEK 64
Query: 67 IMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEG 126
I +++E + C+++G+ +DA L R+ Q + Y EP+ E ALCD+ + +
Sbjct: 65 IYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQF 124
Query: 127 DEESMSRPFGVSLLIAGSDEN-GPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNK 185
+ RPFGVSLL G D++ G LY +DPSG + A IG+ S A S L++ Y +
Sbjct: 125 GGK---RPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKE 181
Query: 186 -DLTLQEAETIALSILKQVME-EKVTPNNVDIA 216
++TL+ A +A+ +L + M+ K++ V+IA
Sbjct: 182 GEMTLKSALALAIKVLNKTMDVSKLSAEKVEIA 214
>pdb|3OEU|B Chain B, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|P Chain P, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|B Chain B, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|P Chain P, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3SDI|B Chain B, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|P Chain P, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|B Chain B, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|P Chain P, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
Length = 235
Score = 140 bits (353), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 75/193 (38%), Positives = 117/193 (60%), Gaps = 5/193 (2%)
Query: 15 FSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLE-PSSVEKIMEIDEH 73
FSPEGRL+QVEYA+E+I TAIG+ +G+VLA E+++TS LLE +S EK+ ++++
Sbjct: 3 FSPEGRLYQVEYALESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDK 62
Query: 74 IGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSR 133
I A++GL ADA L+ AR+ QN+ +Y E + VE + L D+ + + R
Sbjct: 63 IAVAVAGLTADAEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGY---TQHGGLR 119
Query: 134 PFGVSLLIAGSDEN-GPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEA 192
PFGVS + AG D+ G LY ++PSG + A ++G+ + A + LQ Y D+ + +A
Sbjct: 120 PFGVSFIYAGYDDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMDYKDDMKVDDA 179
Query: 193 ETIALSILKQVME 205
+AL L + +
Sbjct: 180 IELALKTLSKTTD 192
>pdb|3UNB|B Chain B, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|P Chain P, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|DD Chain d, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|RR Chain r, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|B Chain B, Mouse Constitutive 20s Proteasome
pdb|3UNE|P Chain P, Mouse Constitutive 20s Proteasome
pdb|3UNE|DD Chain d, Mouse Constitutive 20s Proteasome
pdb|3UNE|RR Chain r, Mouse Constitutive 20s Proteasome
pdb|3UNF|B Chain B, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|P Chain P, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|B Chain B, Mouse 20s Immunoproteasome
pdb|3UNH|P Chain P, Mouse 20s Immunoproteasome
Length = 261
Score = 140 bits (353), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 82/213 (38%), Positives = 124/213 (58%), Gaps = 7/213 (3%)
Query: 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLL-EPSSVEK 66
YD FSPEGRL+QVEYA+EAI T +G+ +GV+LA E+R LL E EK
Sbjct: 5 YDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEK 64
Query: 67 IMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEG 126
I +++E + C+++G+ +DA L R+ Q + Y EP+ E ALCD+ + +
Sbjct: 65 IYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQF 124
Query: 127 DEESMSRPFGVSLLIAGSDEN-GPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNK 185
+ RPFGVSLL G D++ G LY +DPSG + A IG+ S A S L++ Y +
Sbjct: 125 GGK---RPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKE 181
Query: 186 -DLTLQEAETIALSILKQVME-EKVTPNNVDIA 216
++TL+ A +A+ +L + M+ K++ V+IA
Sbjct: 182 GEMTLKSALALAVKVLNKTMDVSKLSAEKVEIA 214
>pdb|1IRU|A Chain A, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|O Chain O, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 246
Score = 139 bits (350), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 75/234 (32%), Positives = 135/234 (57%), Gaps = 14/234 (5%)
Query: 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGS-TAIGLKTKEGVVLAVEKRITSPLLEPSSVEK 66
+DR + FSPEGRL+QVEYA +AI G T++ ++ K+ V+ +K++ LL+ S+V
Sbjct: 9 FDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTH 68
Query: 67 IMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEG 126
+ +I E+IGC M+G+ AD+R+ V+ AR E N ++ YG + V+ + + D++ + +
Sbjct: 69 LFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQN 128
Query: 127 DEESMSRPFGVSLLIAGSD-ENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSS--LQEQY 183
E RP G +++ G D E GP +Y DP+G + C KA +G + +S+ L+++
Sbjct: 129 AE---MRPLGCCMILIGIDEEQGPQVYKCDPAGYY--CGFKATAAGVKQTESTSFLEKKV 183
Query: 184 NK--DLTLQEAETIALSILKQVMEEKVTPNNVDIARVA---PTYHLYTPSEVEA 232
K D T ++ A++ L V+ P+ +++ V P + + T +E++A
Sbjct: 184 KKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILTEAEIDA 237
>pdb|3UNB|G Chain G, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|U Chain U, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|II Chain i, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|WW Chain w, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|G Chain G, Mouse Constitutive 20s Proteasome
pdb|3UNE|U Chain U, Mouse Constitutive 20s Proteasome
pdb|3UNE|II Chain i, Mouse Constitutive 20s Proteasome
pdb|3UNE|WW Chain w, Mouse Constitutive 20s Proteasome
pdb|3UNF|G Chain G, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|U Chain U, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|G Chain G, Mouse 20s Immunoproteasome
pdb|3UNH|U Chain U, Mouse 20s Immunoproteasome
Length = 246
Score = 139 bits (349), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 75/234 (32%), Positives = 134/234 (57%), Gaps = 14/234 (5%)
Query: 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGS-TAIGLKTKEGVVLAVEKRITSPLLEPSSVEK 66
+DR + FSPEGRL+QVEYA +AI G T++ ++ K+ V+ +K++ LL+ S+V
Sbjct: 9 FDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTH 68
Query: 67 IMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEG 126
+ +I E IGC M+G+ AD+R+ V+ AR E N ++ YG + V+ + + D++ + +
Sbjct: 69 LFKITESIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQN 128
Query: 127 DEESMSRPFGVSLLIAGSD-ENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSS--LQEQY 183
E RP G +++ G D E GP +Y DP+G + C KA +G + +S+ L+++
Sbjct: 129 AE---MRPLGCCMILIGIDEEQGPQVYKCDPAGYY--CGFKATAAGVKQTESTSFLEKKV 183
Query: 184 NK--DLTLQEAETIALSILKQVMEEKVTPNNVDIARVA---PTYHLYTPSEVEA 232
K D T ++ A++ L V+ P+ +++ V P + + T +E++A
Sbjct: 184 KKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILTEAEIDA 237
>pdb|1VSY|C Chain C, Proteasome Activator Complex
pdb|1VSY|Q Chain Q, Proteasome Activator Complex
pdb|3L5Q|H Chain H, Proteasome Activator Complex
pdb|3L5Q|T Chain T, Proteasome Activator Complex
Length = 232
Score = 137 bits (346), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 74/192 (38%), Positives = 116/192 (60%), Gaps = 5/192 (2%)
Query: 16 SPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLE-PSSVEKIMEIDEHI 74
SPEGRL+QVEYA+E+I TAIG+ +G+VLA E+++TS LLE +S EK+ ++++ I
Sbjct: 1 SPEGRLYQVEYALESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKI 60
Query: 75 GCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRP 134
A++GL ADA L+ AR+ QN+ +Y E + VE + L D+ + + RP
Sbjct: 61 AVAVAGLTADAEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGY---TQHGGLRP 117
Query: 135 FGVSLLIAGSDEN-GPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAE 193
FGVS + AG D+ G LY ++PSG + A ++G+ + A + LQ Y D+ + +A
Sbjct: 118 FGVSFIYAGYDDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMDYKDDMKVDDAI 177
Query: 194 TIALSILKQVME 205
+AL L + +
Sbjct: 178 ELALKTLSKTTD 189
>pdb|3UNB|E Chain E, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|S Chain S, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|GG Chain g, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|UU Chain u, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|E Chain E, Mouse Constitutive 20s Proteasome
pdb|3UNE|S Chain S, Mouse Constitutive 20s Proteasome
pdb|3UNE|GG Chain g, Mouse Constitutive 20s Proteasome
pdb|3UNE|UU Chain u, Mouse Constitutive 20s Proteasome
pdb|3UNF|E Chain E, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|S Chain S, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|E Chain E, Mouse 20s Immunoproteasome
pdb|3UNH|S Chain S, Mouse 20s Immunoproteasome
Length = 263
Score = 137 bits (344), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 86/248 (34%), Positives = 131/248 (52%), Gaps = 25/248 (10%)
Query: 3 LTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPS 62
+ R +YD V +SP+GR+ Q+EYA+EA+K GS +GLK+K VL KR S L +
Sbjct: 1 MFRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSEL--AA 58
Query: 63 SVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVE-------STTQA 115
+KI+ +D HIG +++GL ADAR L R E + RF + P+ V S TQ
Sbjct: 59 HQKKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQI 118
Query: 116 LCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGA 175
R+G RP+GV LLIAG D+ GP ++ T PS ++ C A +IG+ S+ A
Sbjct: 119 PTQ---RYGR-------RPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSA 168
Query: 176 DSSLQEQYNK--DLTLQEAETIALSILKQVM--EEKVTPNNVDIARVAPT--YHLYTPSE 229
+ L+ ++ + L E L L++ + E+ +T NV I V + +Y +
Sbjct: 169 RTYLERHMSEFMECNLDELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDD 228
Query: 230 VEAVINRL 237
V ++ L
Sbjct: 229 VSPFLDGL 236
>pdb|1IRU|F Chain F, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|T Chain T, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 263
Score = 136 bits (343), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 83/227 (36%), Positives = 123/227 (54%), Gaps = 23/227 (10%)
Query: 3 LTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPS 62
+ R +YD V +SP+GR+ Q+EYA+EA+K GS +GLK+K VL KR S L +
Sbjct: 1 MFRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSEL--AA 58
Query: 63 SVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVE-------STTQA 115
+KI+ +D HIG +++GL ADAR L R E + RF + P+ V S TQ
Sbjct: 59 HQKKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQI 118
Query: 116 LCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGA 175
R+G RP+GV LLIAG D+ GP ++ T PS ++ C A +IG+ S+ A
Sbjct: 119 PTQ---RYGR-------RPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSA 168
Query: 176 DSSLQEQYNK--DLTLQEAETIALSILKQVM--EEKVTPNNVDIARV 218
+ L+ ++ + L E L L++ + E+ +T NV I V
Sbjct: 169 RTYLERHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIV 215
>pdb|3UNB|F Chain F, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|T Chain T, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|HH Chain h, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|VV Chain v, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|F Chain F, Mouse Constitutive 20s Proteasome
pdb|3UNE|T Chain T, Mouse Constitutive 20s Proteasome
pdb|3UNE|HH Chain h, Mouse Constitutive 20s Proteasome
pdb|3UNE|VV Chain v, Mouse Constitutive 20s Proteasome
pdb|3UNF|F Chain F, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|T Chain T, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|F Chain F, Mouse 20s Immunoproteasome
pdb|3UNH|T Chain T, Mouse 20s Immunoproteasome
Length = 255
Score = 132 bits (333), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 78/207 (37%), Positives = 117/207 (56%), Gaps = 14/207 (6%)
Query: 6 TEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVE 65
T YD +TFSP+GR+FQVEYA++A++ STAIG++ K+GVV VEK + S L E S +
Sbjct: 6 TGYDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNK 65
Query: 66 KIMEIDEHIGCAMSGLIADARTLVEHARVETQNHR--FSYGEPMTVESTTQALCDLALRF 123
++ +D H+G A++GL+ADAR+L + AR E N R F Y P+ + A+ A
Sbjct: 66 RLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTL 125
Query: 124 GEGDEESMSRPFGVSLLIAG-SDENGPSLYYTDPSGT---FWQCNAKAIGSGSEGADSSL 179
S RPFG S ++ S +G LY DPSG +W C AIG + A + +
Sbjct: 126 -----YSAVRPFGCSFMLGSYSANDGAQLYMIDPSGVSYGYWGC---AIGKARQAAKTEI 177
Query: 180 QEQYNKDLTLQEAETIALSILKQVMEE 206
++ K++T ++ I+ V +E
Sbjct: 178 EKLQMKEMTCRDVVKEVAKIIYIVHDE 204
>pdb|1IRU|G Chain G, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|U Chain U, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 254
Score = 132 bits (331), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 75/192 (39%), Positives = 112/192 (58%), Gaps = 14/192 (7%)
Query: 6 TEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVE 65
T YD +TFSP+GR+FQVEYA++A++ STAIG++ K+GVV VEK + S L E S +
Sbjct: 5 TGYDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNK 64
Query: 66 KIMEIDEHIGCAMSGLIADARTLVEHARVETQNHR--FSYGEPMTVESTTQALCDLALRF 123
++ +D H+G A++GL+ADAR+L + AR E N R F Y P+ + A+ A
Sbjct: 65 RLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTL 124
Query: 124 GEGDEESMSRPFGVSLLIAG-SDENGPSLYYTDPSGT---FWQCNAKAIGSGSEGADSSL 179
S RPFG S ++ S +G LY DPSG +W C AIG + A + +
Sbjct: 125 -----YSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGC---AIGKARQAAKTEI 176
Query: 180 QEQYNKDLTLQE 191
++ K++T ++
Sbjct: 177 EKLQMKEMTCRD 188
>pdb|1VSY|D Chain D, Proteasome Activator Complex
pdb|1VSY|R Chain R, Proteasome Activator Complex
pdb|3L5Q|I Chain I, Proteasome Activator Complex
pdb|3L5Q|U Chain U, Proteasome Activator Complex
Length = 227
Score = 130 bits (328), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 81/209 (38%), Positives = 122/209 (58%), Gaps = 17/209 (8%)
Query: 21 LFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPL----LEPSSVEKIMEIDEHIGC 76
+FQVEYA+EA+K G+ A+G+K K VVL E+R T L + PS V KI D H+
Sbjct: 1 IFQVEYALEAVKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKI---DSHVVL 57
Query: 77 AMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFG 136
+ SGL AD+R L+E ARVE Q+HR + +P+TVE T+ + + R+ + RPFG
Sbjct: 58 SFSGLNADSRILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQS---GGVRPFG 114
Query: 137 VSLLIAGSD--ENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKD---LTLQE 191
VS LIAG D ++ P LY T+PSG + +A+ IG S+ L++ Y++ T++E
Sbjct: 115 VSTLIAGFDPRDDEPKLYQTEPSGIYSSWSAQTIGRNSKTVREFLEKNYDRKEPPATVEE 174
Query: 192 AETIALSILKQVMEEKVTPNNVDIARVAP 220
+ + L +V++ N++I V P
Sbjct: 175 CVKLTVRSLLEVVQ--TGAKNIEITVVKP 201
>pdb|1VSY|B Chain B, Proteasome Activator Complex
pdb|1VSY|P Chain P, Proteasome Activator Complex
pdb|3L5Q|G Chain G, Proteasome Activator Complex
pdb|3L5Q|S Chain S, Proteasome Activator Complex
Length = 231
Score = 127 bits (320), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 76/199 (38%), Positives = 119/199 (59%), Gaps = 5/199 (2%)
Query: 23 QVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLI 82
Q++YA+ A+K G T++G+K GVV+A EK+ +SPL ++ K+ + IG SG+
Sbjct: 1 QIDYALTAVKQGVTSLGIKATNGVVIATEKKSSSPLAMSETLSKVSLLTPDIGAVYSGMG 60
Query: 83 ADARTLVEHAR-VETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLI 141
D R LV+ +R V +++ YGE T + ++A E + RPFGVSLLI
Sbjct: 61 PDYRVLVDKSRKVAHTSYKRIYGE---YPPTKLLVSEVAKIMQEATQSGGVRPFGVSLLI 117
Query: 142 AGSDE-NGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSIL 200
AG DE NG SLY DPSG+++ A AIG GS A + L++++N +L L++A IAL L
Sbjct: 118 AGHDEFNGFSLYQVDPSGSYFPWKATAIGKGSVAAKTFLEKRWNDELELEDAIHIALLTL 177
Query: 201 KQVMEEKVTPNNVDIARVA 219
K+ +E + + +++A +
Sbjct: 178 KESVEGEFNGDTIELAIIG 196
>pdb|1G0U|E Chain E, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|S Chain S, A Gated Channel Into The Proteasome Core Particle
Length = 234
Score = 124 bits (310), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 81/224 (36%), Positives = 117/224 (52%), Gaps = 12/224 (5%)
Query: 1 MFLTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLE 60
MF R YD TFSP GRLFQVEYA+EAIK GS +GL++ VL KR L
Sbjct: 1 MF--RNNYDGDTVTFSPTGRLFQVEYALEAIKQGSVTVGLRSNTHAVLVALKRNADEL-- 56
Query: 61 PSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLA 120
S +KI++ DEH+G +++GL DAR L + R + + + VE LCD A
Sbjct: 57 SSYQKKIIKCDEHMGLSLAGLAPDARVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKA 116
Query: 121 LRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQ 180
+ + + RP+GV LLI G D++G L PSG + AIG+ S+GA + L+
Sbjct: 117 QK---NTQSAGGRPYGVGLLIIGYDKSGAHLLEFQPSGNVTELYGTAIGARSQGAKTYLE 173
Query: 181 EQYNKDLTL--QEAETIAL---SILKQVMEEKVTPNNVDIARVA 219
+ + + E I +I + + +E +T +N+ IA V
Sbjct: 174 RTLDTFIKIDGNPDELIKAGVEAISQSLRDESLTVDNLSIAIVG 217
>pdb|3SDI|E Chain E, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|S Chain S, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
Length = 233
Score = 124 bits (310), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 79/220 (35%), Positives = 115/220 (52%), Gaps = 10/220 (4%)
Query: 5 RTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSV 64
R YD TFSP GRLFQVEYA+EAIK GS +GL++ VL KR L S
Sbjct: 2 RNNYDGDTVTFSPTGRLFQVEYALEAIKQGSVTVGLRSNTHAVLVALKRNADEL--SSYQ 59
Query: 65 EKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFG 124
+KI++ DEH+G +++GL DAR L + R + + + VE LCD A +
Sbjct: 60 KKIIKCDEHMGLSLAGLAPDARVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQK-- 117
Query: 125 EGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYN 184
+ + RP+GV LLI G D++G L PSG + AIG+ S+GA + L+ +
Sbjct: 118 -NTQSAGGRPYGVGLLIIGYDKSGAHLLEFQPSGNVTELYGTAIGARSQGAKTYLERTLD 176
Query: 185 KDLTL--QEAETIAL---SILKQVMEEKVTPNNVDIARVA 219
+ + E I +I + + +E +T +N+ IA V
Sbjct: 177 TFIKIDGNPDELIKAGVEAISQSLRDESLTVDNLSIAIVG 216
>pdb|1FNT|F Chain F, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|T Chain T, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|F Chain F, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|T Chain T, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2ZCY|E Chain E, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|S Chain S, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|E Chain E, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|S Chain S, Yeast 20s Proteasome:glidobactin A-Complex
pdb|1VSY|F Chain F, Proteasome Activator Complex
pdb|1VSY|T Chain T, Proteasome Activator Complex
pdb|3L5Q|K Chain K, Proteasome Activator Complex
pdb|3L5Q|W Chain W, Proteasome Activator Complex
pdb|3NZJ|E Chain E, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|S Chain S, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|E Chain E, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|S Chain S, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|E Chain E, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|S Chain S, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3MG6|E Chain E, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|S Chain S, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|E Chain E, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|S Chain S, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|E Chain E, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|S Chain S, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3UN4|E Chain E, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|S Chain S, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|E Chain E, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|S Chain S, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|4B4T|F Chain F, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
pdb|4INR|E Chain E, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|S Chain S, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|E Chain E, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|S Chain S, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|E Chain E, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|S Chain S, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 234
Score = 123 bits (308), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 81/224 (36%), Positives = 116/224 (51%), Gaps = 12/224 (5%)
Query: 1 MFLTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLE 60
MF R YD TFSP GRLFQVEYA+EAIK GS +GL++ VL KR L
Sbjct: 1 MF--RNNYDGDTVTFSPTGRLFQVEYALEAIKQGSVTVGLRSNTHAVLVALKRNADEL-- 56
Query: 61 PSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLA 120
S +KI++ DEH+G +++GL DAR L + R + + + VE LCD A
Sbjct: 57 SSYQKKIIKCDEHMGLSLAGLAPDARVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKA 116
Query: 121 LRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQ 180
+ + RP+GV LLI G D++G L PSG + AIG+ S+GA + L+
Sbjct: 117 QK---NTQSYGGRPYGVGLLIIGYDKSGAHLLEFQPSGNVTELYGTAIGARSQGAKTYLE 173
Query: 181 EQYNKDLTL--QEAETIAL---SILKQVMEEKVTPNNVDIARVA 219
+ + + E I +I + + +E +T +N+ IA V
Sbjct: 174 RTLDTFIKIDGNPDELIKAGVEAISQSLRDESLTVDNLSIAIVG 217
>pdb|4G4S|F Chain F, Structure Of Proteasome-Pba1-Pba2 Complex
Length = 235
Score = 123 bits (308), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 81/224 (36%), Positives = 116/224 (51%), Gaps = 12/224 (5%)
Query: 1 MFLTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLE 60
MF R YD TFSP GRLFQVEYA+EAIK GS +GL++ VL KR L
Sbjct: 2 MF--RNNYDGDTVTFSPTGRLFQVEYALEAIKQGSVTVGLRSNTHAVLVALKRNADEL-- 57
Query: 61 PSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLA 120
S +KI++ DEH+G +++GL DAR L + R + + + VE LCD A
Sbjct: 58 SSYQKKIIKCDEHMGLSLAGLAPDARVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKA 117
Query: 121 LRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQ 180
+ + RP+GV LLI G D++G L PSG + AIG+ S+GA + L+
Sbjct: 118 QK---NTQSYGGRPYGVGLLIIGYDKSGAHLLEFQPSGNVTELYGTAIGARSQGAKTYLE 174
Query: 181 EQYNKDLTL--QEAETIAL---SILKQVMEEKVTPNNVDIARVA 219
+ + + E I +I + + +E +T +N+ IA V
Sbjct: 175 RTLDTFIKIDGNPDELIKAGVEAISQSLRDESLTVDNLSIAIVG 218
>pdb|1RYP|F Chain F, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|T Chain T, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|E Chain E, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|S Chain S, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1JD2|E Chain E, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|Z Chain Z, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|2F16|E Chain E, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|S Chain S, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|E Chain E, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|S Chain S, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|E Chain E, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|S Chain S, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|3D29|E Chain E, Proteasome Inhibition By Fellutamide B
pdb|3D29|S Chain S, Proteasome Inhibition By Fellutamide B
pdb|3E47|E Chain E, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|S Chain S, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|E Chain E, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|S Chain S, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|E Chain E, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|S Chain S, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|E Chain E, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|S Chain S, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|E Chain E, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|S Chain S, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|E Chain E, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|S Chain S, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|E Chain E, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|S Chain S, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3MG4|E Chain E, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|S Chain S, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|E Chain E, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|S Chain S, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3OKJ|E Chain E, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|S Chain S, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OEU|E Chain E, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|S Chain S, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|E Chain E, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|S Chain S, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3TDD|E Chain E, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|S Chain S, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|E Chain E, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|S Chain S, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SDK|E Chain E, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|S Chain S, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|4GK7|E Chain E, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|S Chain S, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4FZC|E Chain E, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|S Chain S, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|E Chain E, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|S Chain S, 20s Yeast Proteasome In Complex With Glidobactin
Length = 233
Score = 123 bits (308), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 79/220 (35%), Positives = 114/220 (51%), Gaps = 10/220 (4%)
Query: 5 RTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSV 64
R YD TFSP GRLFQVEYA+EAIK GS +GL++ VL KR L S
Sbjct: 2 RNNYDGDTVTFSPTGRLFQVEYALEAIKQGSVTVGLRSNTHAVLVALKRNADEL--SSYQ 59
Query: 65 EKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFG 124
+KI++ DEH+G +++GL DAR L + R + + + VE LCD A +
Sbjct: 60 KKIIKCDEHMGLSLAGLAPDARVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQK-- 117
Query: 125 EGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYN 184
+ RP+GV LLI G D++G L PSG + AIG+ S+GA + L+ +
Sbjct: 118 -NTQSYGGRPYGVGLLIIGYDKSGAHLLEFQPSGNVTELYGTAIGARSQGAKTYLERTLD 176
Query: 185 KDLTL--QEAETIAL---SILKQVMEEKVTPNNVDIARVA 219
+ + E I +I + + +E +T +N+ IA V
Sbjct: 177 TFIKIDGNPDELIKAGVEAISQSLRDESLTVDNLSIAIVG 216
>pdb|1G0U|G Chain G, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|U Chain U, A Gated Channel Into The Proteasome Core Particle
pdb|1FNT|A Chain A, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|O Chain O, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|A Chain A, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|O Chain O, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2ZCY|G Chain G, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|U Chain U, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|G Chain G, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|U Chain U, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3NZJ|G Chain G, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|U Chain U, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|G Chain G, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|U Chain U, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|G Chain G, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|U Chain U, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3MG6|G Chain G, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|U Chain U, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|G Chain G, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|U Chain U, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|G Chain G, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|U Chain U, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3UN4|G Chain G, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|U Chain U, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|G Chain G, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|U Chain U, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|4B4T|A Chain A, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
pdb|4G4S|A Chain A, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4INR|G Chain G, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|U Chain U, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|G Chain G, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|U Chain U, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|G Chain G, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|U Chain U, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 252
Score = 101 bits (251), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 95/180 (52%), Gaps = 5/180 (2%)
Query: 8 YDRGVNTFSPEGRLFQVEYAIEAI-KLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEK 66
YDR + FSPEGRL+QVEYA +A + ++ ++ K+ V+ +K++ LL+P++V
Sbjct: 12 YDRHITIFSPEGRLYQVEYAFKATNQTNINSLAVRGKDCTVVISQKKVPDKLLDPTTVSY 71
Query: 67 IMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEG 126
I I IG ++G I DAR A+ E R+ YG M + + + +L+ +
Sbjct: 72 IFCISRTIGMVVNGPIPDARNAALRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYT-- 129
Query: 127 DEESMSRPFGVSLLIAGSDEN-GPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNK 185
+ + RP GV L DE GPS+Y TDP+G + A A G + ++L+ + K
Sbjct: 130 -QRAYMRPLGVILTFVSVDEELGPSIYKTDPAGYYVGYKATATGPKQQEITTNLENHFKK 188
>pdb|1RYP|A Chain A, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|O Chain O, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|G Chain G, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|U Chain U, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1JD2|G Chain G, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|2 Chain 2, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|2F16|G Chain G, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|U Chain U, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|G Chain G, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|U Chain U, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|G Chain G, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|U Chain U, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|3D29|G Chain G, Proteasome Inhibition By Fellutamide B
pdb|3D29|U Chain U, Proteasome Inhibition By Fellutamide B
pdb|3E47|G Chain G, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|U Chain U, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|G Chain G, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|U Chain U, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|G Chain G, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|U Chain U, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|G Chain G, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|U Chain U, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|G Chain G, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|U Chain U, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|G Chain G, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|U Chain U, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|G Chain G, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|U Chain U, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|1VSY|A Chain A, Proteasome Activator Complex
pdb|1VSY|O Chain O, Proteasome Activator Complex
pdb|3L5Q|A Chain A, Proteasome Activator Complex
pdb|3L5Q|C Chain C, Proteasome Activator Complex
pdb|3MG4|G Chain G, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|U Chain U, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|G Chain G, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|U Chain U, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3OKJ|G Chain G, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|U Chain U, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OEU|G Chain G, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|U Chain U, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|G Chain G, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|U Chain U, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3TDD|G Chain G, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|U Chain U, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|G Chain G, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|U Chain U, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SDI|G Chain G, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|U Chain U, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|G Chain G, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|U Chain U, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|4GK7|G Chain G, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|U Chain U, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4FZC|G Chain G, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|U Chain U, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|G Chain G, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|U Chain U, 20s Yeast Proteasome In Complex With Glidobactin
Length = 243
Score = 101 bits (251), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 95/180 (52%), Gaps = 5/180 (2%)
Query: 8 YDRGVNTFSPEGRLFQVEYAIEAI-KLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEK 66
YDR + FSPEGRL+QVEYA +A + ++ ++ K+ V+ +K++ LL+P++V
Sbjct: 3 YDRHITIFSPEGRLYQVEYAFKATNQTNINSLAVRGKDCTVVISQKKVPDKLLDPTTVSY 62
Query: 67 IMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEG 126
I I IG ++G I DAR A+ E R+ YG M + + + +L+ +
Sbjct: 63 IFCISRTIGMVVNGPIPDARNAALRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYT-- 120
Query: 127 DEESMSRPFGVSLLIAGSDEN-GPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNK 185
+ + RP GV L DE GPS+Y TDP+G + A A G + ++L+ + K
Sbjct: 121 -QRAYMRPLGVILTFVSVDEELGPSIYKTDPAGYYVGYKATATGPKQQEITTNLENHFKK 179
>pdb|1J2Q|H Chain H, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|I Chain I, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|J Chain J, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|K Chain K, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|L Chain L, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|M Chain M, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|N Chain N, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
Length = 202
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 102/209 (48%), Gaps = 15/209 (7%)
Query: 35 STAIGLKTKEGVVLAVEKRIT-SPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHAR 93
+T +GL K+GVV+A EKR T + + +KI +I + + +G + DA+ L +
Sbjct: 1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIK 60
Query: 94 VETQNHRFSYGEPMTVESTTQALCDL--ALRFGEGDEESMSRPFGVSLLIAGSDENGPSL 151
+E + TV + +L + R+ P+ V LLI G D G S+
Sbjct: 61 IEANLYEIRRERKPTVRAIATLTSNLLNSYRY---------FPYLVQLLIGGIDSEGKSI 111
Query: 152 YYTDP-SGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVME-EKVT 209
Y DP G + + A GSGS A L++++ ++ + EA +A+ + M+ + +
Sbjct: 112 YSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVELAVRAIYSAMKRDSAS 171
Query: 210 PNNVDIARVAPT-YHLYTPSEVEAVINRL 237
+ +D+ ++ ++ Y+P EVE ++ +
Sbjct: 172 GDGIDVVKITEDEFYQYSPEEVEQILAKF 200
>pdb|3UNF|H Chain H, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|V Chain V, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|H Chain H, Mouse 20s Immunoproteasome
pdb|3UNH|V Chain V, Mouse 20s Immunoproteasome
Length = 234
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 90/182 (49%), Gaps = 10/182 (5%)
Query: 35 STAIGLKTKEGVVLAVEKRITS-PLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHAR 93
+T GL ++GV+L + R T+ ++ S EKI I I C +G+ AD A
Sbjct: 1 TTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAA 60
Query: 94 VETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYY 153
+ + H S G V + T+ L R+ +G G SL++ G D NGP LY
Sbjct: 61 SKMELHALSTGREPRVATVTRILRQTLFRY-QGH-------VGASLVVGGVDLNGPQLYE 112
Query: 154 TDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIAL-SILKQVMEEKVTPNN 212
P G++ + A+GSG A + L++++ ++TL+ A+ + + +I ++ + + N
Sbjct: 113 VHPHGSYSRLPFTALGSGQGAAVALLEDRFQPNMTLEAAQELLVEAITAGILSDLGSGGN 172
Query: 213 VD 214
VD
Sbjct: 173 VD 174
>pdb|1YA7|H Chain H, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|I Chain I, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|J Chain J, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|K Chain K, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|L Chain L, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|M Chain M, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|N Chain N, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YAR|H Chain H, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|I Chain I, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|J Chain J, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|K Chain K, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|L Chain L, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|M Chain M, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|N Chain N, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAU|H Chain H, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|I Chain I, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|J Chain J, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|K Chain K, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|L Chain L, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|M Chain M, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|N Chain N, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|3IPM|H Chain H, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|I Chain I, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|J Chain J, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|K Chain K, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|L Chain L, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|M Chain M, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|N Chain N, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
Length = 217
Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 97/194 (50%), Gaps = 14/194 (7%)
Query: 29 EAIKLGSTAIGLKTKEGVVLAVEKRIT-SPLLEPSSVEKIMEIDEHIGCAMSGLIADART 87
+ ++ G+T +G+ K+ V++A E+R+T + + +K+ +ID + G ++GL+ DA+
Sbjct: 3 QTLETGTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQV 62
Query: 88 LVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDEN 147
LV + + E + +R M +E+ L ++ + P+ V LL+ G D
Sbjct: 63 LVRYMKAELELYRLQRRVNMPIEAVATLLSNML-------NQVKYMPYMVQLLVGGID-T 114
Query: 148 GPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETI---ALSILKQVM 204
P ++ D +G + + GSGS L+ QY++ +T+ E + A+S KQ
Sbjct: 115 APHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDLVIRAISAAKQ-- 172
Query: 205 EEKVTPNNVDIARV 218
+ + +D+A +
Sbjct: 173 RDSASGGMIDVAVI 186
>pdb|1PMA|B Chain B, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|P Chain P, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|Q Chain Q, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|R Chain R, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|S Chain S, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|T Chain T, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|U Chain U, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|V Chain V, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|W Chain W, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|X Chain X, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|Y Chain Y, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|Z Chain Z, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|1 Chain 1, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|2 Chain 2, Proteasome From Thermoplasma Acidophilum
Length = 211
Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 97/194 (50%), Gaps = 14/194 (7%)
Query: 29 EAIKLGSTAIGLKTKEGVVLAVEKRIT-SPLLEPSSVEKIMEIDEHIGCAMSGLIADART 87
+ ++ G+T +G+ K+ V++A E+R+T + + +K+ +ID + G ++GL+ DA+
Sbjct: 3 QTLETGTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQV 62
Query: 88 LVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDEN 147
LV + + E + +R M +E+ L ++ + P+ V LL+ G D
Sbjct: 63 LVRYMKAELELYRLQRRVNMPIEAVATLLSNML-------NQVKYMPYMVQLLVGGID-T 114
Query: 148 GPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETI---ALSILKQVM 204
P ++ D +G + + GSGS L+ QY++ +T+ E + A+S KQ
Sbjct: 115 APHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDLVIRAISAAKQ-- 172
Query: 205 EEKVTPNNVDIARV 218
+ + +D+A +
Sbjct: 173 RDSASGGMIDVAVI 186
>pdb|3C91|H Chain H, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|I Chain I, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|J Chain J, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|K Chain K, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|L Chain L, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|M Chain M, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|N Chain N, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|V Chain V, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|W Chain W, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|X Chain X, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|Y Chain Y, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|Z Chain Z, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|1 Chain 1, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|2 Chain 2, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C92|H Chain H, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|I Chain I, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|J Chain J, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|K Chain K, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|L Chain L, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|M Chain M, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|N Chain N, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|V Chain V, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|W Chain W, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|X Chain X, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|Y Chain Y, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|Z Chain Z, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|1 Chain 1, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|2 Chain 2, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3JRM|H Chain H, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|I Chain I, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|J Chain J, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|K Chain K, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|L Chain L, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|M Chain M, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|N Chain N, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|H Chain H, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|I Chain I, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|J Chain J, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|K Chain K, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|L Chain L, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|M Chain M, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|N Chain N, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|H Chain H, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|I Chain I, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|J Chain J, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|K Chain K, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|L Chain L, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|M Chain M, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|N Chain N, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
Length = 203
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 93/188 (49%), Gaps = 14/188 (7%)
Query: 35 STAIGLKTKEGVVLAVEKRIT-SPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHAR 93
+T +G+ K+ V++A E+R+T + + +K+ +ID + G ++GL+ DA+ LV + +
Sbjct: 1 TTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMK 60
Query: 94 VETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYY 153
E + +R M +E+ L ++ + P+ V LL+ G D P ++
Sbjct: 61 AELELYRLQRRVNMPIEAVATLLSNML-------NQVKYMPYMVQLLVGGID-TAPHVFS 112
Query: 154 TDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETI---ALSILKQVMEEKVTP 210
D +G + + GSGS L+ QY++ +T+ E + A+S KQ + +
Sbjct: 113 IDAAGGSVEDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDLVIRAISAAKQ--RDSASG 170
Query: 211 NNVDIARV 218
+D+A +
Sbjct: 171 GMIDVAVI 178
>pdb|3UNF|K Chain K, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|Y Chain Y, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|K Chain K, Mouse 20s Immunoproteasome
pdb|3UNH|Y Chain Y, Mouse 20s Immunoproteasome
Length = 204
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 82/161 (50%), Gaps = 12/161 (7%)
Query: 35 STAIGLKTKEGVVLAVEKRITS-PLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHAR 93
+T + K + GV++AV+ R T+ + + K++EI+ ++ MSG AD +
Sbjct: 1 TTTLAFKFQHGVIVAVDSRATAGSYISSLRMNKVIEINPYLLGTMSGCAADCQYWERLLA 60
Query: 94 VETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSL--LIAGSDENGPSL 151
E + + GE ++V + ++ L ++ L++ R G+S+ +I G D+ GP L
Sbjct: 61 KECRLYYLRNGERISVSAASKLLSNMMLQY---------RGMGLSMGSMICGWDKKGPGL 111
Query: 152 YYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEA 192
YY D +GT + GSG+ A + Y +DL+ +EA
Sbjct: 112 YYVDDNGTRLSGQMFSTGSGNTYAYGVMDSGYRQDLSPEEA 152
>pdb|3UNB|K Chain K, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|Y Chain Y, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|MM Chain m, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|1 Chain 1, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|K Chain K, Mouse Constitutive 20s Proteasome
pdb|3UNE|Y Chain Y, Mouse Constitutive 20s Proteasome
pdb|3UNE|MM Chain m, Mouse Constitutive 20s Proteasome
pdb|3UNE|1 Chain 1, Mouse Constitutive 20s Proteasome
Length = 205
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 87/176 (49%), Gaps = 22/176 (12%)
Query: 35 STAIGLKTKEGVVLAVEKRITS-PLLEPSSVEKIMEIDEHIGCAMSGLIADA----RTLV 89
+T + K GV++A + R T+ + +V+K++EI+ ++ M+G AD R L
Sbjct: 1 TTTLAFKFLHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLA 60
Query: 90 EHARV-ETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSL--LIAGSDE 146
R+ E +N E ++V + ++ L ++ ++ + G+S+ +I G D+
Sbjct: 61 RQCRIYELRNK-----ERISVAAASKLLANMVYQY---------KGMGLSMGTMICGWDK 106
Query: 147 NGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQ 202
GP LYY D G A ++GSGS A + Y+ DL ++EA +A + Q
Sbjct: 107 RGPGLYYVDSEGNRISGTAFSVGSGSVYAYGVMDRGYSYDLKVEEAYDLARRAIYQ 162
>pdb|3H4P|AA Chain a, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|BB Chain b, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|CC Chain c, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|DD Chain d, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|EE Chain e, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|FF Chain f, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|GG Chain g, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|HH Chain h, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|II Chain i, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|JJ Chain j, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|KK Chain k, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|LL Chain l, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|MM Chain m, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|NN Chain n, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
Length = 219
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 100/208 (48%), Gaps = 12/208 (5%)
Query: 35 STAIGLKTKEGVVLAVEKRIT-SPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHAR 93
+T +GL + V+LA +KR + L+ +K+ +ID++I ++G + DA+ +V
Sbjct: 2 TTTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLI 61
Query: 94 VETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSD-ENGPSLY 152
E + ++ G + + L ++ S PF ++I G D G L+
Sbjct: 62 AEAKLYKMRTGRNIPPLACATLLSNIL-------HSSRMFPFLTQIIIGGYDLLEGAKLF 114
Query: 153 YTDPSGTFWQCNA-KAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVME-EKVTP 210
DP G + A GSGS A L+ Y++D++++E +AL+ LK ME + +
Sbjct: 115 SLDPLGGMNEEKTFTATGSGSPIAYGVLEAGYDRDMSVEEGIKLALNALKSAMERDTFSG 174
Query: 211 NNVDIARVAPT-YHLYTPSEVEAVINRL 237
N + +A + ++ E+E +++ +
Sbjct: 175 NGISLAVITKDGVKIFEDEEIEKILDSM 202
>pdb|1IRU|L Chain L, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|Z Chain Z, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 204
Score = 63.5 bits (153), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 87/176 (49%), Gaps = 22/176 (12%)
Query: 35 STAIGLKTKEGVVLAVEKRITS-PLLEPSSVEKIMEIDEHIGCAMSGLIADA----RTLV 89
+T + K + GV++A + R T+ + +V+K++EI+ ++ M+G AD R L
Sbjct: 1 TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLA 60
Query: 90 EHARV-ETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSL--LIAGSDE 146
R+ E +N E ++V + ++ L ++ ++ + G+S+ +I G D+
Sbjct: 61 RQCRIYELRNK-----ERISVAAASKLLANMVYQY---------KGMGLSMGTMICGWDK 106
Query: 147 NGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQ 202
GP LYY D G ++GSGS A + Y+ DL +++A +A + Q
Sbjct: 107 RGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDLARRAIYQ 162
>pdb|3NZJ|K Chain K, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|Y Chain Y, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|K Chain K, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|Y Chain Y, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|K Chain K, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|Y Chain Y, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
Length = 287
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 96/197 (48%), Gaps = 8/197 (4%)
Query: 31 IKLGSTAIGLKTKEGVVLAVEKRITS-PLLEPSSVEKIMEIDEHIGCAMSGLIADARTLV 89
I G+T + + + G+++AV+ R T+ + +V+K++EI+ + M+G AD +
Sbjct: 72 IAHGTTTLAFRFQGGIIVAVDSRATAGNWVASQTVKKVIEINPFLLGTMAGGAADCQFWE 131
Query: 90 EHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGP 149
+ + H E ++V + ++ L +L ++ +G SM +++ + + GP
Sbjct: 132 TWLGSQCRLHELREKERISVAAASKILSNLVYQY-KGAGLSMG-----TMICGYTRKEGP 185
Query: 150 SLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIA-LSILKQVMEEKV 208
++YY D GT + + +GSG A L Y DL++++A + SIL +
Sbjct: 186 TIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRDAY 245
Query: 209 TPNNVDIARVAPTYHLY 225
+ +V++ V +Y
Sbjct: 246 SGGSVNLYHVTEDGWIY 262
>pdb|4B4T|5 Chain 5, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 287
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 96/197 (48%), Gaps = 8/197 (4%)
Query: 31 IKLGSTAIGLKTKEGVVLAVEKRITS-PLLEPSSVEKIMEIDEHIGCAMSGLIADARTLV 89
I G+T + + + G+++AV+ R T+ + +V++++EI+ + M+G AD +
Sbjct: 72 IAHGTTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWE 131
Query: 90 EHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGP 149
+ + H E ++V + ++ L +L ++ +G SM +++ + + GP
Sbjct: 132 TWLGSQCRLHELREKERISVAAASKILSNLVYQY-KGAGLSMG-----TMICGYTRKEGP 185
Query: 150 SLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIA-LSILKQVMEEKV 208
++YY D GT + + +GSG A L Y DL++++A + SIL +
Sbjct: 186 TIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRDAY 245
Query: 209 TPNNVDIARVAPTYHLY 225
+ +V++ V +Y
Sbjct: 246 SGGSVNLYHVTEDGWIY 262
>pdb|1G0U|K Chain K, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|Y Chain Y, A Gated Channel Into The Proteasome Core Particle
pdb|1JD2|K Chain K, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|R Chain R, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|2F16|K Chain K, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|Y Chain Y, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|K Chain K, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|Y Chain Y, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|K Chain K, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|Y Chain Y, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2ZCY|K Chain K, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|Y Chain Y, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|K Chain K, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|Y Chain Y, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3D29|K Chain K, Proteasome Inhibition By Fellutamide B
pdb|3D29|Y Chain Y, Proteasome Inhibition By Fellutamide B
pdb|3E47|K Chain K, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|Y Chain Y, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|K Chain K, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|Y Chain Y, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|K Chain K, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|Y Chain Y, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|K Chain K, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|Y Chain Y, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|K Chain K, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|Y Chain Y, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|K Chain K, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|Y Chain Y, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|K Chain K, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|Y Chain Y, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3MG4|K Chain K, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|Y Chain Y, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|K Chain K, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|Y Chain Y, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG6|K Chain K, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|Y Chain Y, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|K Chain K, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|Y Chain Y, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|K Chain K, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|Y Chain Y, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3OKJ|K Chain K, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|Y Chain Y, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OEU|K Chain K, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|Y Chain Y, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|K Chain K, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|Y Chain Y, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3TDD|K Chain K, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|Y Chain Y, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|K Chain K, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|Y Chain Y, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|1G65|K Chain K, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|Y Chain Y, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|3UN4|K Chain K, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|Y Chain Y, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|K Chain K, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|Y Chain Y, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3SDI|K Chain K, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|Y Chain Y, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|K Chain K, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|Y Chain Y, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|4GK7|K Chain K, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|Y Chain Y, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4G4S|L Chain L, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4FZC|K Chain K, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|Y Chain Y, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|K Chain K, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|Y Chain Y, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4INR|K Chain K, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|Y Chain Y, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|K Chain K, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|Y Chain Y, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|K Chain K, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|Y Chain Y, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 212
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 94/193 (48%), Gaps = 8/193 (4%)
Query: 35 STAIGLKTKEGVVLAVEKRITSP-LLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHAR 93
+T + + + G+++AV+ R T+ + +V+K++EI+ + M+G AD +
Sbjct: 1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKKVIEINPFLLGTMAGGAADCQFWETWLG 60
Query: 94 VETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYY 153
+ + H E ++V + ++ L +L ++ +G SM +++ + + GP++YY
Sbjct: 61 SQCRLHELREKERISVAAASKILSNLVYQY-KGAGLSMG-----TMICGYTRKEGPTIYY 114
Query: 154 TDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIA-LSILKQVMEEKVTPNN 212
D GT + + +GSG A L Y DL++++A + SIL + + +
Sbjct: 115 VDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRDAYSGGS 174
Query: 213 VDIARVAPTYHLY 225
V++ V +Y
Sbjct: 175 VNLYHVTEDGWIY 187
>pdb|1RYP|L Chain L, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|Z Chain Z, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1FNT|L Chain L, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|Z Chain Z, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|L Chain L, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|Z Chain Z, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1VSY|L Chain L, Proteasome Activator Complex
pdb|1VSY|Z Chain Z, Proteasome Activator Complex
pdb|3L5Q|P Chain P, Proteasome Activator Complex
pdb|3L5Q|2 Chain 2, Proteasome Activator Complex
Length = 212
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 94/193 (48%), Gaps = 8/193 (4%)
Query: 35 STAIGLKTKEGVVLAVEKRITSP-LLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHAR 93
+T + + + G+++AV+ R T+ + +V++++EI+ + M+G AD +
Sbjct: 1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLG 60
Query: 94 VETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYY 153
+ + H E ++V + ++ L +L ++ +G SM +++ + + GP++YY
Sbjct: 61 SQCRLHELREKERISVAAASKILSNLVYQY-KGAGLSMG-----TMICGYTRKEGPTIYY 114
Query: 154 TDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIA-LSILKQVMEEKVTPNN 212
D GT + + +GSG A L Y DL++++A + SIL + + +
Sbjct: 115 VDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRDAYSGGS 174
Query: 213 VDIARVAPTYHLY 225
V++ V +Y
Sbjct: 175 VNLYHVTEDGWIY 187
>pdb|3NZJ|H Chain H, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|V Chain V, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|H Chain H, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|V Chain V, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|H Chain H, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|V Chain V, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|4B4T|2 Chain 2, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 261
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 85/189 (44%), Gaps = 10/189 (5%)
Query: 29 EAIKLGSTAIGLKTKEGVVLAVEKRIT-SPLLEPSSVEKIMEIDEHIGCAMSGLIADART 87
+A G+T +G+K GVV+A + R T P++ + K+ I I CA +G AD
Sbjct: 24 KATSTGTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEA 83
Query: 88 LVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDEN 147
+ + + H V S Q L ++ +G G L++AG D
Sbjct: 84 VTQLIGSNIELHSLYTSREPRVVSALQMLKQHLFKY-QGH-------IGAYLIVAGVDPT 135
Query: 148 GPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIAL-SILKQVMEE 206
G L+ G+ ++GSGS A + L+ + +DLT +EA +A +I + +
Sbjct: 136 GSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLASDAIQAGIWND 195
Query: 207 KVTPNNVDI 215
+ +NVD+
Sbjct: 196 LGSGSNVDV 204
>pdb|1RYP|I Chain I, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|W Chain W, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|H Chain H, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|V Chain V, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G0U|H Chain H, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|V Chain V, A Gated Channel Into The Proteasome Core Particle
pdb|1JD2|H Chain H, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|O Chain O, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1Z7Q|I Chain I, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|W Chain W, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2F16|H Chain H, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|V Chain V, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|H Chain H, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|V Chain V, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|H Chain H, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|V Chain V, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|3D29|H Chain H, Proteasome Inhibition By Fellutamide B
pdb|3D29|V Chain V, Proteasome Inhibition By Fellutamide B
pdb|3E47|H Chain H, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|V Chain V, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|H Chain H, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|V Chain V, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|H Chain H, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|V Chain V, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|H Chain H, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|V Chain V, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|H Chain H, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|V Chain V, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|H Chain H, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|V Chain V, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|H Chain H, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|V Chain V, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|1VSY|I Chain I, Proteasome Activator Complex
pdb|1VSY|W Chain W, Proteasome Activator Complex
pdb|3L5Q|M Chain M, Proteasome Activator Complex
pdb|3L5Q|Y Chain Y, Proteasome Activator Complex
pdb|3MG4|H Chain H, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|V Chain V, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|H Chain H, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|V Chain V, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG6|H Chain H, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|V Chain V, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|H Chain H, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|V Chain V, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|H Chain H, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|V Chain V, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3OKJ|H Chain H, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|V Chain V, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OEU|H Chain H, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|V Chain V, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|H Chain H, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|V Chain V, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3TDD|H Chain H, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|V Chain V, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|H Chain H, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|V Chain V, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SDI|H Chain H, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|V Chain V, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|H Chain H, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|V Chain V, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|4GK7|H Chain H, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|V Chain V, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4FZC|H Chain H, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|V Chain V, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|H Chain H, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|V Chain V, 20s Yeast Proteasome In Complex With Glidobactin
Length = 222
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 82/183 (44%), Gaps = 10/183 (5%)
Query: 35 STAIGLKTKEGVVLAVEKRIT-SPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHAR 93
+T +G+K GVV+A + R T P++ + K+ I I CA +G AD + +
Sbjct: 1 TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIG 60
Query: 94 VETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYY 153
+ H V S Q L ++ +G G L++AG D G L+
Sbjct: 61 SNIELHSLYTSREPRVVSALQMLKQHLFKY-QGH-------IGAYLIVAGVDPTGSHLFS 112
Query: 154 TDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIAL-SILKQVMEEKVTPNN 212
G+ ++GSGS A + L+ + +DLT +EA +A +I + + + +N
Sbjct: 113 IHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLASDAIQAGIWNDLGSGSN 172
Query: 213 VDI 215
VD+
Sbjct: 173 VDV 175
>pdb|1FNT|I Chain I, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|W Chain W, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2ZCY|H Chain H, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|V Chain V, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|H Chain H, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|V Chain V, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3UN4|H Chain H, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|V Chain V, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|H Chain H, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|V Chain V, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|4G4S|I Chain I, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4INR|H Chain H, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|V Chain V, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|H Chain H, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|V Chain V, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|H Chain H, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|V Chain V, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 232
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 82/183 (44%), Gaps = 10/183 (5%)
Query: 35 STAIGLKTKEGVVLAVEKRIT-SPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHAR 93
+T +G+K GVV+A + R T P++ + K+ I I CA +G AD + +
Sbjct: 1 TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIG 60
Query: 94 VETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYY 153
+ H V S Q L ++ +G G L++AG D G L+
Sbjct: 61 SNIELHSLYTSREPRVVSALQMLKQHLFKY-QGH-------IGAYLIVAGVDPTGSHLFS 112
Query: 154 TDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIAL-SILKQVMEEKVTPNN 212
G+ ++GSGS A + L+ + +DLT +EA +A +I + + + +N
Sbjct: 113 IHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLASDAIQAGIWNDLGSGSN 172
Query: 213 VDI 215
VD+
Sbjct: 173 VDV 175
>pdb|1IRU|I Chain I, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|W Chain W, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 234
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 86/188 (45%), Gaps = 12/188 (6%)
Query: 35 STAIGLKTKEGVVLAVEKRITSPLL-EPSSVEKIMEIDEHIGCAMSGLIADARTLVEHAR 93
+T G+ K+G+VL + R T ++ + KI I +I C +G AD +
Sbjct: 1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLIS 60
Query: 94 VETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPF-GVSLLIAGSDENGPSLY 152
+ H S G V + + L + R+ R + G +L++ G D GP LY
Sbjct: 61 SNLELHSLSTGRLPRVVTANRMLKQMLFRY---------RGYIGAALVLGGVDVTGPHLY 111
Query: 153 YTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAET-IALSILKQVMEEKVTPN 211
P G+ + +GSGS A + ++++ D+ +EA+ ++ +I + + + +
Sbjct: 112 SIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKNLVSEAIAAGIFNDLGSGS 171
Query: 212 NVDIARVA 219
N+D+ ++
Sbjct: 172 NIDLCVIS 179
>pdb|3UNB|H Chain H, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|V Chain V, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|JJ Chain j, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|XX Chain x, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|H Chain H, Mouse Constitutive 20s Proteasome
pdb|3UNE|V Chain V, Mouse Constitutive 20s Proteasome
pdb|3UNE|JJ Chain j, Mouse Constitutive 20s Proteasome
pdb|3UNE|XX Chain x, Mouse Constitutive 20s Proteasome
Length = 234
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 84/187 (44%), Gaps = 10/187 (5%)
Query: 35 STAIGLKTKEGVVLAVEKRITSPLL-EPSSVEKIMEIDEHIGCAMSGLIADARTLVEHAR 93
+T G+ K+G+VL + R T ++ + KI I +I C +G AD +
Sbjct: 1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLIS 60
Query: 94 VETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYY 153
+ H + G V + + L + R+ G +L++ G D GP LY
Sbjct: 61 SNLELHSLTTGRLPRVVTANRMLKQMLFRY--------QGYIGAALVLGGVDVTGPHLYS 112
Query: 154 TDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAET-IALSILKQVMEEKVTPNN 212
P G+ + +GSGS A + ++++ D+ +EA+ ++ +I + + + +N
Sbjct: 113 IYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKKLVSEAIAAGIFNDLGSGSN 172
Query: 213 VDIARVA 219
+D+ ++
Sbjct: 173 IDLCVIS 179
>pdb|2H6J|H Chain H, Crystal Structure Of The Beta F145a Rhodococcus Proteasome
(Casp Target)
pdb|2H6J|I Chain I, Crystal Structure Of The Beta F145a Rhodococcus Proteasome
(Casp Target)
pdb|2H6J|J Chain J, Crystal Structure Of The Beta F145a Rhodococcus Proteasome
(Casp Target)
pdb|2H6J|K Chain K, Crystal Structure Of The Beta F145a Rhodococcus Proteasome
(Casp Target)
pdb|2H6J|L Chain L, Crystal Structure Of The Beta F145a Rhodococcus Proteasome
(Casp Target)
pdb|2H6J|M Chain M, Crystal Structure Of The Beta F145a Rhodococcus Proteasome
(Casp Target)
pdb|2H6J|N Chain N, Crystal Structure Of The Beta F145a Rhodococcus Proteasome
(Casp Target)
Length = 294
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 85/198 (42%), Gaps = 14/198 (7%)
Query: 34 GSTAIGLKTKEGVVLAVEKRIT-SPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHA 92
G+T + L K GV+LA ++R T L+ VEK+ DE+ ++G A LV
Sbjct: 65 GTTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLF 124
Query: 93 RVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSD------- 145
VE +++ G P+T + L + G+ + + V L+ G D
Sbjct: 125 AVELEHYEKIEGVPLTFDGKANRLASMV----RGNLGAAMQGLAVVPLLVGYDLDADDES 180
Query: 146 ENGPSLYYTDPSGTFWQ-CNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVM 204
G + Y G + + A+GSGS A S+L++ Y+ D + A A+ L
Sbjct: 181 RAGRIVSYDVVGGRYEERAGYHAVGSGSLAAKSALKKIYSPDSDEETALRAAIESLYDAA 240
Query: 205 EEKVTPNNVDIAR-VAPT 221
++ D+ R + PT
Sbjct: 241 DDDSATGGPDLTRGIYPT 258
>pdb|3UNB|N Chain N, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|BB Chain b, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|PP Chain p, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|4 Chain 4, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|N Chain N, Mouse Constitutive 20s Proteasome
pdb|3UNE|BB Chain b, Mouse Constitutive 20s Proteasome
pdb|3UNE|PP Chain p, Mouse Constitutive 20s Proteasome
pdb|3UNE|4 Chain 4, Mouse Constitutive 20s Proteasome
Length = 205
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 76/172 (44%), Gaps = 15/172 (8%)
Query: 35 STAIGLKTKEGVVLAVEKRITSPLLEPSSV-EKIMEIDEHIGCAMSGLIADARTLVEHAR 93
+T + ++ GVVL + R T+ + V +K+ I +HI C SG AD + + +
Sbjct: 1 TTIMAVQFNGGVVLGADSRTTTGSYIANRVTDKLTPIHDHIFCCRSGSAADTQAVADAVT 60
Query: 94 VETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYY 153
+ H EP V + ++ R+ E+ M+ ++IAG D Y
Sbjct: 61 YQLGFHSIELNEPPLVHTAASLFKEMCYRY---REDLMA-----GIIIAGWDPQEGGQVY 112
Query: 154 TDPSGTFWQCNAKAI-GSGSE----GADSSLQEQYNKDLTLQ-EAETIALSI 199
+ P G + AI GSGS D++ +E KD LQ A +AL++
Sbjct: 113 SVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKDECLQFTANALALAM 164
>pdb|1Q5Q|H Chain H, The Rhodococcus 20s Proteasome
pdb|1Q5Q|I Chain I, The Rhodococcus 20s Proteasome
pdb|1Q5Q|J Chain J, The Rhodococcus 20s Proteasome
pdb|1Q5Q|K Chain K, The Rhodococcus 20s Proteasome
pdb|1Q5Q|L Chain L, The Rhodococcus 20s Proteasome
pdb|1Q5Q|M Chain M, The Rhodococcus 20s Proteasome
pdb|1Q5Q|N Chain N, The Rhodococcus 20s Proteasome
Length = 235
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 84/197 (42%), Gaps = 14/197 (7%)
Query: 35 STAIGLKTKEGVVLAVEKRIT-SPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHAR 93
+T + L K GV+LA ++R T L+ VEK+ DE+ ++G A LV
Sbjct: 1 TTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFA 60
Query: 94 VETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSD-------E 146
VE +++ G P+T + L + G+ + + V L+ G D
Sbjct: 61 VELEHYEKIEGVPLTFDGKANRLASMV----RGNLGAAMQGLAVVPLLVGYDLDADDESR 116
Query: 147 NGPSLYYTDPSGTFWQ-CNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVME 205
G + Y G + + A+GSGS A S+L++ Y+ D + A A+ L +
Sbjct: 117 AGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSPDSDEETALRAAIESLYDAAD 176
Query: 206 EKVTPNNVDIAR-VAPT 221
+ D+ R + PT
Sbjct: 177 DDSATGGPDLTRGIYPT 193
>pdb|1Q5R|H Chain H, The Rhodococcus 20s Proteasome With Unprocessed
Pro-Peptides
pdb|1Q5R|I Chain I, The Rhodococcus 20s Proteasome With Unprocessed
Pro-Peptides
pdb|1Q5R|J Chain J, The Rhodococcus 20s Proteasome With Unprocessed
Pro-Peptides
pdb|1Q5R|K Chain K, The Rhodococcus 20s Proteasome With Unprocessed
Pro-Peptides
pdb|1Q5R|L Chain L, The Rhodococcus 20s Proteasome With Unprocessed
Pro-Peptides
pdb|1Q5R|M Chain M, The Rhodococcus 20s Proteasome With Unprocessed
Pro-Peptides
pdb|1Q5R|N Chain N, The Rhodococcus 20s Proteasome With Unprocessed
Pro-Peptides
Length = 294
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 84/198 (42%), Gaps = 14/198 (7%)
Query: 34 GSTAIGLKTKEGVVLAVEKRIT-SPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHA 92
G+T + L K GV+LA ++R T L+ VE + DE+ ++G A LV
Sbjct: 65 GTTIVALTYKGGVLLAGDRRATQGNLIASRDVEAVYVTDEYSAAGIAGTAGIAIELVRLF 124
Query: 93 RVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSD------- 145
VE +++ G P+T + L + G+ + + V L+ G D
Sbjct: 125 AVELEHYEKIEGVPLTFDGKANRLASMV----RGNLGAAMQGLAVVPLLVGYDLDADDES 180
Query: 146 ENGPSLYYTDPSGTFWQ-CNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVM 204
G + Y G + + A+GSGS A S+L++ Y+ D + A A+ L
Sbjct: 181 RAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSPDSDEETALRAAIESLYDAA 240
Query: 205 EEKVTPNNVDIAR-VAPT 221
++ D+ R + PT
Sbjct: 241 DDDSATGGPDLTRGIYPT 258
>pdb|1RYP|K Chain K, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|Y Chain Y, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|J Chain J, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|X Chain X, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G0U|J Chain J, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|X Chain X, A Gated Channel Into The Proteasome Core Particle
pdb|1FNT|K Chain K, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|Y Chain Y, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1JD2|J Chain J, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|Q Chain Q, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1Z7Q|K Chain K, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|Y Chain Y, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2F16|J Chain J, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|X Chain X, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|J Chain J, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|X Chain X, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|J Chain J, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|X Chain X, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2ZCY|J Chain J, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|X Chain X, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|J Chain J, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|X Chain X, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3D29|J Chain J, Proteasome Inhibition By Fellutamide B
pdb|3D29|X Chain X, Proteasome Inhibition By Fellutamide B
pdb|3E47|J Chain J, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|X Chain X, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|J Chain J, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|X Chain X, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|J Chain J, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|X Chain X, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|J Chain J, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|X Chain X, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|J Chain J, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|X Chain X, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|J Chain J, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|X Chain X, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|J Chain J, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|X Chain X, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|1VSY|K Chain K, Proteasome Activator Complex
pdb|1VSY|Y Chain Y, Proteasome Activator Complex
pdb|3L5Q|O Chain O, Proteasome Activator Complex
pdb|3L5Q|1 Chain 1, Proteasome Activator Complex
pdb|3NZJ|J Chain J, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|X Chain X, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|J Chain J, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|X Chain X, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|J Chain J, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|X Chain X, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3MG4|J Chain J, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|X Chain X, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|J Chain J, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|X Chain X, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG6|J Chain J, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|X Chain X, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|J Chain J, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|X Chain X, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|J Chain J, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|X Chain X, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3OKJ|J Chain J, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|X Chain X, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OEU|J Chain J, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|X Chain X, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|J Chain J, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|X Chain X, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3TDD|J Chain J, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|X Chain X, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|J Chain J, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|X Chain X, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3UN4|J Chain J, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|X Chain X, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|J Chain J, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|X Chain X, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3SDI|J Chain J, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|X Chain X, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|J Chain J, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|X Chain X, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|4GK7|J Chain J, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|X Chain X, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4B4T|4 Chain 4, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
pdb|4G4S|K Chain K, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4FZC|J Chain J, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|X Chain X, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|J Chain J, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|X Chain X, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4INR|J Chain J, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|X Chain X, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|J Chain J, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|X Chain X, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|J Chain J, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|X Chain X, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 198
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 76/175 (43%), Gaps = 18/175 (10%)
Query: 38 IGLKTKEGVVLAVEKRITSPL-LEPSSVEKIMEIDEHIGCAMSGLIADARTLVEH--ARV 94
+G++ ++ V+LA K +T + + S +K ++ H + +G D E+ A +
Sbjct: 5 LGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQANI 64
Query: 95 ETQNHRFSYG-EPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDE--NGPSL 151
+ + R Y P V S + ++R RP+ V++LI G D+ N P L
Sbjct: 65 QLYSIREDYELSPQAVSSFVRQELAKSIR--------SRRPYQVNVLIGGYDKKKNKPEL 116
Query: 152 YYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEE 206
Y D GT + A G S L Y D+T +E L +LK ++E
Sbjct: 117 YQIDYLGTKVELPYGAHGYSGFYTFSLLDHHYRPDMTTEE----GLDLLKLCVQE 167
>pdb|1RYP|M Chain M, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|1 Chain 1, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|L Chain L, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|Z Chain Z, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1FNT|M Chain M, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|AA Chain a, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1JD2|L Chain L, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|S Chain S, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1Z7Q|M Chain M, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|AA Chain a, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2F16|L Chain L, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|Z Chain Z, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|L Chain L, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|Z Chain Z, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|L Chain L, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|Z Chain Z, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|3D29|L Chain L, Proteasome Inhibition By Fellutamide B
pdb|3D29|Z Chain Z, Proteasome Inhibition By Fellutamide B
pdb|3E47|L Chain L, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|Z Chain Z, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|L Chain L, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|Z Chain Z, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|L Chain L, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|Z Chain Z, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|L Chain L, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|Z Chain Z, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|L Chain L, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|Z Chain Z, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|L Chain L, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|Z Chain Z, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|L Chain L, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|Z Chain Z, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|1VSY|M Chain M, Proteasome Activator Complex
pdb|1VSY|1 Chain 1, Proteasome Activator Complex
pdb|3L5Q|Q Chain Q, Proteasome Activator Complex
pdb|3L5Q|3 Chain 3, Proteasome Activator Complex
pdb|3MG4|L Chain L, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|Z Chain Z, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|L Chain L, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|Z Chain Z, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3OKJ|L Chain L, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|Z Chain Z, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OEU|L Chain L, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|Z Chain Z, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|L Chain L, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|Z Chain Z, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3TDD|L Chain L, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|Z Chain Z, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|L Chain L, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|Z Chain Z, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3UN4|L Chain L, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|Z Chain Z, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|L Chain L, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|Z Chain Z, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3SDI|L Chain L, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|Z Chain Z, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|L Chain L, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|Z Chain Z, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|4GK7|L Chain L, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|Z Chain Z, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4G4S|M Chain M, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4FZC|L Chain L, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|Z Chain Z, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|L Chain L, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|Z Chain Z, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4INR|L Chain L, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|Z Chain Z, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|L Chain L, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|Z Chain Z, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|L Chain L, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|Z Chain Z, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 222
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 72/156 (46%), Gaps = 14/156 (8%)
Query: 34 GSTAIGLKTKEGVVLAVEKR-ITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHA 92
G T +G+ ++ VLA + R IT + K+ + ++I + +G AD LV+
Sbjct: 9 GGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKRF 68
Query: 93 RVETQNHRFSYGEP-MTVESTTQALCDL--ALRFGEGDEESMSRPFGVSLLIAGSDENGP 149
+ + + F + + +++ S + + L RF P+ V +IAG DE+G
Sbjct: 69 KNSVKWYHFDHNDKKLSINSAARNIQHLLYGKRF---------FPYYVHTIIAGLDEDGK 119
Query: 150 -SLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYN 184
++Y DP G++ + +A G+ + L Q N
Sbjct: 120 GAVYSFDPVGSYEREQCRAGGAAASLIMPFLDNQVN 155
>pdb|1G0U|L Chain L, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|Z Chain Z, A Gated Channel Into The Proteasome Core Particle
pdb|2ZCY|L Chain L, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|Z Chain Z, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|L Chain L, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|Z Chain Z, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3NZJ|L Chain L, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|Z Chain Z, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|L Chain L, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|Z Chain Z, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|L Chain L, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|Z Chain Z, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3MG6|L Chain L, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|Z Chain Z, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|L Chain L, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|Z Chain Z, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|L Chain L, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|Z Chain Z, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|4B4T|6 Chain 6, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 241
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 69/144 (47%), Gaps = 14/144 (9%)
Query: 34 GSTAIGLKTKEGVVLAVEKR-ITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHA 92
G T +G+ ++ VLA + R IT + K+ + ++I + +G AD LV+
Sbjct: 28 GGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKRF 87
Query: 93 RVETQNHRFSYGEP-MTVESTTQALCDL--ALRFGEGDEESMSRPFGVSLLIAGSDENGP 149
+ + + F + + +++ S + + L RF P+ V +IAG DE+G
Sbjct: 88 KNSVKWYHFDHNDKKLSINSAARNIQHLLYGKRF---------FPYYVHTIIAGLDEDGK 138
Query: 150 -SLYYTDPSGTFWQCNAKAIGSGS 172
++Y DP G++ + +A G+ +
Sbjct: 139 GAVYSFDPVGSYEREQCRAGGAAA 162
>pdb|3NZJ|N Chain N, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|2 Chain 2, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|N Chain N, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|2 Chain 2, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|N Chain N, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|2 Chain 2, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|4B4T|1 Chain 1, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 215
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 61/129 (47%), Gaps = 10/129 (7%)
Query: 31 IKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSV-EKIMEIDEHIGCAMSGLIADARTLV 89
+ LG++ + + K+GV+L + R T+ + V +K+ + + I C SG AD + +
Sbjct: 16 VSLGTSIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIA 75
Query: 90 EHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGP 149
+ + + + YG P T E+ +L ++++++ +++AG D+
Sbjct: 76 DIVQYHLELYTSQYGTPST-ETAASVFKELCYE----NKDNLT----AGIIVAGYDDKNK 126
Query: 150 SLYYTDPSG 158
YT P G
Sbjct: 127 GEVYTIPLG 135
>pdb|1RYP|H Chain H, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|V Chain V, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
Length = 205
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/177 (20%), Positives = 79/177 (44%), Gaps = 11/177 (6%)
Query: 31 IKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSV-EKIMEIDEHIGCAMSGLIADARTLV 89
+ LG++ + + K+GV+L + R T+ + V +K+ + + I C SG AD + +
Sbjct: 6 VSLGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIA 65
Query: 90 EHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGP 149
+ + + + YG P T E+ +L ++++++ +++AG D+
Sbjct: 66 DIVQYHLELYTSQYGTPST-ETAASVFKELCYE----NKDNLT----AGIIVAGYDDKNK 116
Query: 150 SLYYTDP-SGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVME 205
YT P G+ + GSGS + + ++++ +E L Q ++
Sbjct: 117 GEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSLSQAIK 173
>pdb|1Q5Q|A Chain A, The Rhodococcus 20s Proteasome
pdb|1Q5Q|B Chain B, The Rhodococcus 20s Proteasome
pdb|1Q5Q|C Chain C, The Rhodococcus 20s Proteasome
pdb|1Q5Q|D Chain D, The Rhodococcus 20s Proteasome
pdb|1Q5Q|E Chain E, The Rhodococcus 20s Proteasome
pdb|1Q5Q|F Chain F, The Rhodococcus 20s Proteasome
pdb|1Q5Q|G Chain G, The Rhodococcus 20s Proteasome
pdb|2H6J|A Chain A, Crystal Structure Of The Beta F145a Rhodococcus Proteasome
(Casp Target)
pdb|2H6J|B Chain B, Crystal Structure Of The Beta F145a Rhodococcus Proteasome
(Casp Target)
pdb|2H6J|C Chain C, Crystal Structure Of The Beta F145a Rhodococcus Proteasome
(Casp Target)
pdb|2H6J|D Chain D, Crystal Structure Of The Beta F145a Rhodococcus Proteasome
(Casp Target)
pdb|2H6J|E Chain E, Crystal Structure Of The Beta F145a Rhodococcus Proteasome
(Casp Target)
pdb|2H6J|F Chain F, Crystal Structure Of The Beta F145a Rhodococcus Proteasome
(Casp Target)
pdb|2H6J|G Chain G, Crystal Structure Of The Beta F145a Rhodococcus Proteasome
(Casp Target)
Length = 259
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 83/200 (41%), Gaps = 21/200 (10%)
Query: 25 EYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSS-VEKIMEIDEHIGCAMSGLIA 83
E A + I G + + L ++GV+ E PS+ + K+ E+ + +G A G
Sbjct: 18 ELARKGIARGRSVVVLTFRDGVLFVAEN--------PSTALHKVSELYDRLGFAAVGKYN 69
Query: 84 DARTLVEHARVETQNHRFSYGE-PMTVESTTQALCD-LALRFGEGDEESMSRPFGVSLLI 141
+ L V +SY +T S A L F E +P+ V + +
Sbjct: 70 EFENLRRAGIVHADMRGYSYDRRDVTGRSLANAYAQTLGTIFTE-----QPKPYEVEICV 124
Query: 142 AGSDENG----PSLYYTDPSGTFW-QCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIA 196
A G P LY G+ + + +G +E ++++E Y DL L+ A IA
Sbjct: 125 AEVGRVGSPKAPQLYRITYDGSIVDEQHFVVMGGTTEPIATAMRESYRADLDLEAAVGIA 184
Query: 197 LSILKQVMEEKVTPNNVDIA 216
++ L+Q + NVD+A
Sbjct: 185 VNALRQGGAGEGEKRNVDVA 204
>pdb|1Q5R|A Chain A, The Rhodococcus 20s Proteasome With Unprocessed
Pro-Peptides
pdb|1Q5R|B Chain B, The Rhodococcus 20s Proteasome With Unprocessed
Pro-Peptides
pdb|1Q5R|C Chain C, The Rhodococcus 20s Proteasome With Unprocessed
Pro-Peptides
pdb|1Q5R|D Chain D, The Rhodococcus 20s Proteasome With Unprocessed
Pro-Peptides
pdb|1Q5R|E Chain E, The Rhodococcus 20s Proteasome With Unprocessed
Pro-Peptides
pdb|1Q5R|F Chain F, The Rhodococcus 20s Proteasome With Unprocessed
Pro-Peptides
pdb|1Q5R|G Chain G, The Rhodococcus 20s Proteasome With Unprocessed
Pro-Peptides
Length = 259
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 83/200 (41%), Gaps = 21/200 (10%)
Query: 25 EYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPS-SVEKIMEIDEHIGCAMSGLIA 83
E A + I G + + L ++GV+ E PS ++ K+ E+ + +G A G
Sbjct: 18 ELARKGIARGRSVVVLTFRDGVLFVAEN--------PSTALHKVSELYDRLGFAAVGKYN 69
Query: 84 DARTLVEHARVETQNHRFSYGE-PMTVESTTQALCD-LALRFGEGDEESMSRPFGVSLLI 141
+ L V +SY +T S A L F E +P+ V + +
Sbjct: 70 EFENLRRAGIVHADMRGYSYDRRDVTGRSLANAYAQTLGTIFTE-----QPKPYEVEICV 124
Query: 142 AGSDENG----PSLYYTDPSGTFW-QCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIA 196
A G P LY G+ + + +G +E ++++E Y DL L+ A IA
Sbjct: 125 AEVGRVGSPKAPQLYRITYDGSIVDEQHFVVMGGTTEPIATAMRESYRADLDLEAAVGIA 184
Query: 197 LSILKQVMEEKVTPNNVDIA 216
++ L+Q + NVD+A
Sbjct: 185 VNALRQGGAGEGEKRNVDVA 204
>pdb|1G65|N Chain N, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|2 Chain 2, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G0U|N Chain N, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|2 Chain 2, A Gated Channel Into The Proteasome Core Particle
pdb|1FNT|H Chain H, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|V Chain V, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1JD2|N Chain N, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|U Chain U, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1Z7Q|H Chain H, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|V Chain V, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2F16|N Chain N, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|2 Chain 2, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|N Chain N, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|2 Chain 2, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|N Chain N, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|2 Chain 2, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2ZCY|N Chain N, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|1 Chain 1, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|N Chain N, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|1 Chain 1, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3D29|N Chain N, Proteasome Inhibition By Fellutamide B
pdb|3D29|2 Chain 2, Proteasome Inhibition By Fellutamide B
pdb|3E47|N Chain N, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|2 Chain 2, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|N Chain N, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|2 Chain 2, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|N Chain N, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|2 Chain 2, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|N Chain N, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|2 Chain 2, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|N Chain N, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|2 Chain 2, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|N Chain N, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|2 Chain 2, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|N Chain N, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|2 Chain 2, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3MG4|N Chain N, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|2 Chain 2, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|N Chain N, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|2 Chain 2, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG6|N Chain N, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|2 Chain 2, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|N Chain N, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|2 Chain 2, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|N Chain N, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|2 Chain 2, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3OKJ|N Chain N, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|2 Chain 2, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OEU|N Chain N, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|2 Chain 2, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|N Chain N, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|2 Chain 2, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3TDD|N Chain N, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|2 Chain 2, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|N Chain N, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|2 Chain 2, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3UN4|N Chain N, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|BB Chain b, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|N Chain N, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|BB Chain b, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3SDI|N Chain N, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|2 Chain 2, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|N Chain N, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|2 Chain 2, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|4GK7|N Chain N, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|BB Chain b, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4G4S|H Chain H, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4FZC|N Chain N, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|BB Chain b, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|N Chain N, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|BB Chain b, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4INR|N Chain N, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|BB Chain b, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|N Chain N, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|BB Chain b, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|N Chain N, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|BB Chain b, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 196
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/165 (20%), Positives = 72/165 (43%), Gaps = 11/165 (6%)
Query: 43 KEGVVLAVEKRITSPLLEPSSV-EKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRF 101
K+GV+L + R T+ + V +K+ + + I C SG AD + + + + + +
Sbjct: 9 KDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYHLELYTS 68
Query: 102 SYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDP-SGTF 160
YG P T E+ +L ++++++ +++AG D+ YT P G+
Sbjct: 69 QYGTPST-ETAASVFKELCYE----NKDNLT----AGIIVAGYDDKNKGEVYTIPLGGSV 119
Query: 161 WQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVME 205
+ GSGS + + ++++ +E L Q ++
Sbjct: 120 HKLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSLSQAIK 164
>pdb|1VSY|H Chain H, Proteasome Activator Complex
pdb|1VSY|V Chain V, Proteasome Activator Complex
pdb|3L5Q|B Chain B, Proteasome Activator Complex
pdb|3L5Q|D Chain D, Proteasome Activator Complex
Length = 196
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/165 (20%), Positives = 72/165 (43%), Gaps = 11/165 (6%)
Query: 43 KEGVVLAVEKRITSPLLEPSSV-EKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRF 101
K+GV+L + R T+ + V +K+ + + I C SG AD + + + + + +
Sbjct: 9 KDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYHLELYTS 68
Query: 102 SYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDP-SGTF 160
YG P T E+ +L ++++++ +++AG D+ YT P G+
Sbjct: 69 QYGTPST-ETAASVFKELCYE----NKDNLT----AGIIVAGYDDKNKGEVYTIPLGGSV 119
Query: 161 WQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVME 205
+ GSGS + + ++++ +E L Q ++
Sbjct: 120 HKLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSLSQAIK 164
>pdb|3UNB|J Chain J, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|X Chain X, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|LL Chain l, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|ZZ Chain z, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|J Chain J, Mouse Constitutive 20s Proteasome
pdb|3UNE|X Chain X, Mouse Constitutive 20s Proteasome
pdb|3UNE|LL Chain l, Mouse Constitutive 20s Proteasome
pdb|3UNE|ZZ Chain z, Mouse Constitutive 20s Proteasome
pdb|3UNF|J Chain J, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|X Chain X, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|J Chain J, Mouse 20s Immunoproteasome
pdb|3UNH|X Chain X, Mouse 20s Immunoproteasome
Length = 201
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 80/176 (45%), Gaps = 21/176 (11%)
Query: 38 IGLKTKEGVVLAVEKRITSPLLE-PSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVET 96
IG++ + V++A ++ S +++ +K+ ++ E I G D E+ +
Sbjct: 5 IGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNV 64
Query: 97 QNHRFSYGEPMT----VESTTQALCDLALRFGEGDEESMSR-PFGVSLLIAGSDEN-GPS 150
Q ++ G ++ T + L D LR SR P+ V+LL+AG DE+ GP+
Sbjct: 65 QLYKMRNGYELSPTAAANFTRRNLAD-CLR---------SRTPYHVNLLLAGYDEHEGPA 114
Query: 151 LYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEE 206
LYY D + A G G+ S L Y ++ + A+ +L++ +EE
Sbjct: 115 LYYMDYLAALAKAPFAAHGYGAFLTLSILDRYYTPTISRER----AVELLRKCLEE 166
>pdb|1IRU|K Chain K, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|Y Chain Y, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 201
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 80/176 (45%), Gaps = 21/176 (11%)
Query: 38 IGLKTKEGVVLAVEKRITSPLLE-PSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVET 96
IG++ + V++A ++ S +++ +K+ ++ E I G D E+ +
Sbjct: 5 IGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNV 64
Query: 97 QNHRFSYGEPMT----VESTTQALCDLALRFGEGDEESMSR-PFGVSLLIAGSDEN-GPS 150
Q ++ G ++ T + L D LR SR P+ V+LL+AG DE+ GP+
Sbjct: 65 QLYKMRNGYELSPTAAANFTRRNLAD-CLR---------SRTPYHVNLLLAGYDEHEGPA 114
Query: 151 LYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEE 206
LYY D + A G G+ S L Y ++ + A+ +L++ +EE
Sbjct: 115 LYYMDYLAALAKAPFAAHGYGAFLTLSILDRYYTPTISRER----AVELLRKCLEE 166
>pdb|3UNF|N Chain N, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|BB Chain b, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|N Chain N, Mouse 20s Immunoproteasome
pdb|3UNH|BB Chain b, Mouse 20s Immunoproteasome
Length = 199
Score = 32.3 bits (72), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 36/180 (20%), Positives = 76/180 (42%), Gaps = 9/180 (5%)
Query: 35 STAIGLKTKEGVVLAVEKRITSPLLEPSSV-EKIMEIDEHIGCAMSGLIADARTLVEHAR 93
+T + ++ GVV+ + R+++ + V +K+ + + I CA+SG ADA+ + + A
Sbjct: 1 TTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAA 60
Query: 94 VETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYY 153
+ + H EP V + + +++ ++ E+ ++ L++AG D+ Y
Sbjct: 61 YQLELHGLELEEPPLVLAAANVVKNISYKY---REDLLAH-----LIVAGWDQREGGQVY 112
Query: 154 TDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNV 213
G + GSGS + Y +T +E + + M + V
Sbjct: 113 GTMGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRRFTTNAITLAMNRDGSSGGV 172
>pdb|2JAY|A Chain A, Proteasome Beta Subunit Prcb From Mycobacterium
Tuberculosis
Length = 291
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 81/197 (41%), Gaps = 12/197 (6%)
Query: 34 GSTAIGLKTKEGVVLAVEKRIT-SPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHA 92
G+T + LK GVV+A ++R T ++ V K+ D++ ++G A A VE A
Sbjct: 57 GTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVA---VEFA 113
Query: 93 R---VETQNHRFSYGEPMTVESTTQALCDLAL-RFGEGDEESMSRPFGVSLLIAGSDENG 148
R VE +++ G P+T L + + ++ P I SD
Sbjct: 114 RLYAVELEHYEKLEGVPLTFAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQS 173
Query: 149 PSLYYTDPSGTFWQC---NAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVME 205
+ + W +A+GSGS A SS+++ Y++ +A+ L +
Sbjct: 174 AGRIVSFDAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAAD 233
Query: 206 EKVTPNNVDIAR-VAPT 221
+ D+ R + PT
Sbjct: 234 DDSATGGPDLVRGIFPT 250
>pdb|3MKA|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
With Propetide And An T1a Mutation At Beta-Subunit
pdb|3MKA|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
With Propetide And An T1a Mutation At Beta-Subunit
pdb|3MKA|G Chain G, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
With Propetide And An T1a Mutation At Beta-Subunit
pdb|3MKA|H Chain H, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
With Propetide And An T1a Mutation At Beta-Subunit
pdb|3MKA|J Chain J, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
With Propetide And An T1a Mutation At Beta-Subunit
pdb|3MKA|L Chain L, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
With Propetide And An T1a Mutation At Beta-Subunit
pdb|3MKA|N Chain N, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
With Propetide And An T1a Mutation At Beta-Subunit
pdb|3MKA|P Chain P, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
With Propetide And An T1a Mutation At Beta-Subunit
pdb|3MKA|R Chain R, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
With Propetide And An T1a Mutation At Beta-Subunit
pdb|3MKA|T Chain T, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
With Propetide And An T1a Mutation At Beta-Subunit
pdb|3MKA|V Chain V, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
With Propetide And An T1a Mutation At Beta-Subunit
pdb|3MKA|X Chain X, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
With Propetide And An T1a Mutation At Beta-Subunit
pdb|3MKA|Z Chain Z, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
With Propetide And An T1a Mutation At Beta-Subunit
pdb|3MKA|2 Chain 2, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
With Propetide And An T1a Mutation At Beta-Subunit
Length = 291
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 81/197 (41%), Gaps = 12/197 (6%)
Query: 34 GSTAIGLKTKEGVVLAVEKRIT-SPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHA 92
G+T + LK GVV+A ++R T ++ V K+ D++ ++G A A VE A
Sbjct: 57 GATIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVA---VEFA 113
Query: 93 R---VETQNHRFSYGEPMTVESTTQALCDLAL-RFGEGDEESMSRPFGVSLLIAGSDENG 148
R VE +++ G P+T L + + ++ P I SD
Sbjct: 114 RLYAVELEHYEKLEGVPLTFAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQS 173
Query: 149 PSLYYTDPSGTFWQC---NAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVME 205
+ + W +A+GSGS A SS+++ Y++ +A+ L +
Sbjct: 174 AGRIVSFDAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAAD 233
Query: 206 EKVTPNNVDIAR-VAPT 221
+ D+ R + PT
Sbjct: 234 DDSATGGPDLVRGIFPT 250
>pdb|2FNC|A Chain A, Thermotoga Maritima Maltotriose Binding Protein Bound With
Maltotriose
Length = 381
Score = 32.0 bits (71), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 13/84 (15%)
Query: 5 RTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSV 64
+ YD + FS G+L+ V YA+EA+ L + K+ V +V K + +
Sbjct: 83 KNFYDTALKAFSYGGKLYGVPYAMEAVAL------IYNKD-YVDSVPKTMD------ELI 129
Query: 65 EKIMEIDEHIGCAMSGLIADARTL 88
EK +IDE G + G I D
Sbjct: 130 EKAKQIDEEYGGEVRGFIYDVANF 153
>pdb|2FHG|H Chain H, Crystal Structure Of Mycobacterial Tuberculosis Proteasome
pdb|2FHG|C Chain C, Crystal Structure Of Mycobacterial Tuberculosis Proteasome
pdb|2FHG|E Chain E, Crystal Structure Of Mycobacterial Tuberculosis Proteasome
pdb|2FHG|G Chain G, Crystal Structure Of Mycobacterial Tuberculosis Proteasome
pdb|2FHG|J Chain J, Crystal Structure Of Mycobacterial Tuberculosis Proteasome
pdb|2FHG|L Chain L, Crystal Structure Of Mycobacterial Tuberculosis Proteasome
pdb|2FHG|N Chain N, Crystal Structure Of Mycobacterial Tuberculosis Proteasome
pdb|2FHG|P Chain P, Crystal Structure Of Mycobacterial Tuberculosis Proteasome
pdb|2FHG|R Chain R, Crystal Structure Of Mycobacterial Tuberculosis Proteasome
pdb|2FHG|T Chain T, Crystal Structure Of Mycobacterial Tuberculosis Proteasome
pdb|2FHG|V Chain V, Crystal Structure Of Mycobacterial Tuberculosis Proteasome
pdb|2FHG|X Chain X, Crystal Structure Of Mycobacterial Tuberculosis Proteasome
pdb|2FHG|Z Chain Z, Crystal Structure Of Mycobacterial Tuberculosis Proteasome
pdb|2FHG|2 Chain 2, Crystal Structure Of Mycobacterial Tuberculosis Proteasome
pdb|2FHH|H Chain H, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With A Peptidyl Boronate Inhibitor Mln-273
pdb|2FHH|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With A Peptidyl Boronate Inhibitor Mln-273
pdb|2FHH|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With A Peptidyl Boronate Inhibitor Mln-273
pdb|2FHH|G Chain G, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With A Peptidyl Boronate Inhibitor Mln-273
pdb|2FHH|J Chain J, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With A Peptidyl Boronate Inhibitor Mln-273
pdb|2FHH|L Chain L, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With A Peptidyl Boronate Inhibitor Mln-273
pdb|2FHH|N Chain N, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With A Peptidyl Boronate Inhibitor Mln-273
pdb|2FHH|P Chain P, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With A Peptidyl Boronate Inhibitor Mln-273
pdb|2FHH|R Chain R, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With A Peptidyl Boronate Inhibitor Mln-273
pdb|2FHH|T Chain T, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With A Peptidyl Boronate Inhibitor Mln-273
pdb|2FHH|V Chain V, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With A Peptidyl Boronate Inhibitor Mln-273
pdb|2FHH|X Chain X, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With A Peptidyl Boronate Inhibitor Mln-273
pdb|2FHH|Z Chain Z, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With A Peptidyl Boronate Inhibitor Mln-273
pdb|2FHH|2 Chain 2, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With A Peptidyl Boronate Inhibitor Mln-273
pdb|3HFA|H Chain H, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant
pdb|3HFA|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant
pdb|3HFA|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant
pdb|3HFA|G Chain G, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant
pdb|3HFA|J Chain J, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant
pdb|3HFA|L Chain L, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant
pdb|3HFA|N Chain N, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant
pdb|3HFA|P Chain P, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant
pdb|3HFA|R Chain R, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant
pdb|3HFA|T Chain T, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant
pdb|3HFA|V Chain V, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant
pdb|3HFA|X Chain X, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant
pdb|3HFA|Z Chain Z, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant
pdb|3HFA|2 Chain 2, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant
pdb|3MFE|G Chain G, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant With H0 Movement
pdb|3MFE|V Chain V, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant With H0 Movement
pdb|3MI0|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
At 2.2 A
pdb|3MI0|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
At 2.2 A
pdb|3MI0|G Chain G, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
At 2.2 A
pdb|3MI0|H Chain H, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
At 2.2 A
pdb|3MI0|J Chain J, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
At 2.2 A
pdb|3MI0|L Chain L, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
At 2.2 A
pdb|3MI0|N Chain N, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
At 2.2 A
pdb|3MI0|P Chain P, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
At 2.2 A
pdb|3MI0|R Chain R, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
At 2.2 A
pdb|3MI0|T Chain T, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
At 2.2 A
pdb|3MI0|V Chain V, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
At 2.2 A
pdb|3MI0|X Chain X, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
At 2.2 A
pdb|3MI0|Z Chain Z, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
At 2.2 A
pdb|3MI0|2 Chain 2, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
At 2.2 A
pdb|3KRD|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With Fellutamide B
pdb|3KRD|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With Fellutamide B
pdb|3KRD|G Chain G, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With Fellutamide B
pdb|3KRD|H Chain H, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With Fellutamide B
pdb|3KRD|J Chain J, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With Fellutamide B
pdb|3KRD|L Chain L, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With Fellutamide B
pdb|3KRD|N Chain N, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With Fellutamide B
pdb|3KRD|P Chain P, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With Fellutamide B
pdb|3KRD|R Chain R, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With Fellutamide B
pdb|3KRD|T Chain T, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With Fellutamide B
pdb|3KRD|V Chain V, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With Fellutamide B
pdb|3KRD|X Chain X, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With Fellutamide B
pdb|3KRD|Z Chain Z, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With Fellutamide B
pdb|3KRD|2 Chain 2, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With Fellutamide B
Length = 240
Score = 30.4 bits (67), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 83/200 (41%), Gaps = 20/200 (10%)
Query: 35 STAIGLKTKEGVVLAVEKRIT-SPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHAR 93
+T + LK GVV+A ++R T ++ V K+ D++ ++G A A VE AR
Sbjct: 1 TTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVA---VEFAR 57
Query: 94 ---VETQNHRFSYGEPMTVESTTQALC-----DLALRFGEGDEESMSRPFGVSLLIAGSD 145
VE +++ G P+T L +LA + + + A
Sbjct: 58 LYAVELEHYEKLEGVPLTFAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIH---ASDP 114
Query: 146 ENGPSLYYTDPSGTFWQC---NAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQ 202
++ + D +G W +A+GSGS A SS+++ Y++ +A+ L
Sbjct: 115 QSAGRIVSFDAAGG-WNIEEEGYQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYD 173
Query: 203 VMEEKVTPNNVDIAR-VAPT 221
++ D+ R + PT
Sbjct: 174 AADDDSATGGPDLVRGIFPT 193
>pdb|2GHA|A Chain A, Thermotoga Maritima Maltotriose Binding Protein Bound With
Maltotriose
pdb|2GHA|B Chain B, Thermotoga Maritima Maltotriose Binding Protein Bound With
Maltotriose
pdb|2GHB|A Chain A, Thermotoga Maritima Maltotriose Binding Protein, Ligand
Free Form
pdb|2GHB|B Chain B, Thermotoga Maritima Maltotriose Binding Protein, Ligand
Free Form
pdb|2GHB|C Chain C, Thermotoga Maritima Maltotriose Binding Protein, Ligand
Free Form
Length = 382
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 21/85 (24%)
Query: 5 RTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSV 64
+ Y+ +N FS G+L+ + YA+EAI L + + + P P ++
Sbjct: 85 KNFYETALNAFSYGGKLYGIPYAMEAIAL--------------IYNKDYVPEP---PKTM 127
Query: 65 EKIME----IDEHIGCAMSGLIADA 85
++++E IDE G + G I A
Sbjct: 128 DELIEIAKQIDEEFGGEVRGFITSA 152
>pdb|3H6F|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Ht1171
pdb|3H6F|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Ht1171
pdb|3H6F|G Chain G, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Ht1171
pdb|3H6F|H Chain H, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Ht1171
pdb|3H6F|J Chain J, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Ht1171
pdb|3H6F|L Chain L, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Ht1171
pdb|3H6F|N Chain N, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Ht1171
pdb|3H6F|P Chain P, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Ht1171
pdb|3H6F|R Chain R, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Ht1171
pdb|3H6F|T Chain T, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Ht1171
pdb|3H6F|V Chain V, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Ht1171
pdb|3H6F|X Chain X, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Ht1171
pdb|3H6F|Z Chain Z, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Ht1171
pdb|3H6F|2 Chain 2, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Ht1171
pdb|3H6I|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Gl1
pdb|3H6I|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Gl1
pdb|3H6I|G Chain G, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Gl1
pdb|3H6I|H Chain H, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Gl1
pdb|3H6I|J Chain J, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Gl1
pdb|3H6I|L Chain L, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Gl1
pdb|3H6I|N Chain N, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Gl1
pdb|3H6I|P Chain P, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Gl1
pdb|3H6I|R Chain R, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Gl1
pdb|3H6I|T Chain T, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Gl1
pdb|3H6I|V Chain V, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Gl1
pdb|3H6I|X Chain X, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Gl1
pdb|3H6I|Z Chain Z, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Gl1
pdb|3H6I|2 Chain 2, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Gl1
pdb|3HF9|H Chain H, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|G Chain G, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|J Chain J, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|L Chain L, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|N Chain N, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|P Chain P, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|R Chain R, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|T Chain T, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|V Chain V, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|X Chain X, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|Z Chain Z, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|2 Chain 2, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|HH Chain h, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|CC Chain c, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|EE Chain e, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|GG Chain g, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|JJ Chain j, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|LL Chain l, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|NN Chain n, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|PP Chain p, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|RR Chain r, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|TT Chain t, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|VV Chain v, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|XX Chain x, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|ZZ Chain z, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|4 Chain 4, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3MFE|H Chain H, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant With H0 Movement
pdb|3MFE|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant With H0 Movement
pdb|3MFE|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant With H0 Movement
pdb|3MFE|J Chain J, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant With H0 Movement
pdb|3MFE|L Chain L, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant With H0 Movement
pdb|3MFE|N Chain N, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant With H0 Movement
pdb|3MFE|P Chain P, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant With H0 Movement
pdb|3MFE|R Chain R, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant With H0 Movement
pdb|3MFE|T Chain T, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant With H0 Movement
pdb|3MFE|X Chain X, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant With H0 Movement
pdb|3MFE|Z Chain Z, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant With H0 Movement
pdb|3MFE|2 Chain 2, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant With H0 Movement
Length = 240
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 82/199 (41%), Gaps = 20/199 (10%)
Query: 36 TAIGLKTKEGVVLAVEKRIT-SPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHAR- 93
T + LK GVV+A ++R T ++ V K+ D++ ++G A A VE AR
Sbjct: 2 TIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVA---VEFARL 58
Query: 94 --VETQNHRFSYGEPMTVESTTQALC-----DLALRFGEGDEESMSRPFGVSLLIAGSDE 146
VE +++ G P+T L +LA + + + A +
Sbjct: 59 YAVELEHYEKLEGVPLTFAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIH---ASDPQ 115
Query: 147 NGPSLYYTDPSGTFWQC---NAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQV 203
+ + D +G W +A+GSGS A SS+++ Y++ +A+ L
Sbjct: 116 SAGRIVSFDAAGG-WNIEEEGYQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDA 174
Query: 204 MEEKVTPNNVDIAR-VAPT 221
++ D+ R + PT
Sbjct: 175 ADDDSATGGPDLVRGIFPT 193
>pdb|1YVP|A Chain A, Ro Autoantigen Complexed With Rnas
pdb|1YVP|B Chain B, Ro Autoantigen Complexed With Rnas
pdb|1YVR|A Chain A, Ro Autoantigen
pdb|2I91|A Chain A, 60kda Ro Autoantigen In Complex With A Fragment Of
Misfolded Rna
pdb|2I91|B Chain B, 60kda Ro Autoantigen In Complex With A Fragment Of
Misfolded Rna
Length = 538
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%)
Query: 12 VNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEID 71
+ TFS EGR + E + A+ + S +KTK+ AV + P + ++ ++
Sbjct: 77 IKTFSQEGRAAKQEPTLFALAVCSQCSDIKTKQAAFRAVPEVCRIPTHLFTFIQFKKDLK 136
Query: 72 EHIGCAMSG 80
E + C M G
Sbjct: 137 EGMKCGMWG 145
>pdb|2B5D|X Chain X, Crystal Structure Of The Novel Alpha-Amylase Amyc From
Thermotoga Maritima
Length = 528
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Query: 153 YTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNN 212
Y DPSG K S+ D+S +E Y+ DL ++ E A L + +E
Sbjct: 277 YIDPSGVRINTGIKYHRITSKSLDASQKEYYDIDLAMEAVEEHARDFLHK--KESQARRL 334
Query: 213 VDIARVAPT 221
+DI V P
Sbjct: 335 MDIMGVEPV 343
>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain
Length = 336
Score = 27.3 bits (59), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 121 LRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTF 160
LRF G+ E++ P+G+ I ++ S+ Y PS F
Sbjct: 65 LRFEIGEGENLDLPYGLERAIQRXEKGEHSIVYLKPSYAF 104
>pdb|2R6R|1 Chain 1, Aquifex Aeolicus Ftsz
pdb|2R75|1 Chain 1, Aquifex Aeolicus Ftsz With 8-Morpholino-Gtp
Length = 338
Score = 26.9 bits (58), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
Query: 10 RGVNTFSPEGRLFQVEYAIEAIKL---GSTAIGL---KTKEGVVLAVEKRITSPLLEPSS 63
RG+ + + V++A L G + IG+ + E +AVEK +TSPLLE ++
Sbjct: 191 RGITSIVVTPAVINVDFADVRTTLEEGGLSIIGMGEGRGDEKADIAVEKAVTSPLLEGNT 250
Query: 64 VE 65
+E
Sbjct: 251 IE 252
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.131 0.364
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,703,357
Number of Sequences: 62578
Number of extensions: 267907
Number of successful extensions: 775
Number of sequences better than 100.0: 102
Number of HSP's better than 100.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 561
Number of HSP's gapped (non-prelim): 102
length of query: 237
length of database: 14,973,337
effective HSP length: 96
effective length of query: 141
effective length of database: 8,965,849
effective search space: 1264184709
effective search space used: 1264184709
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.9 bits)