Query 026496
Match_columns 237
No_of_seqs 128 out of 1094
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 08:47:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026496.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026496hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0176 20S proteasome, regula 100.0 2E-64 4.4E-69 389.8 21.8 237 1-237 1-241 (241)
2 cd03750 proteasome_alpha_type_ 100.0 9.9E-62 2.1E-66 402.0 30.2 224 8-234 1-226 (227)
3 PRK03996 proteasome subunit al 100.0 1.4E-61 3E-66 404.6 30.6 234 1-237 3-239 (241)
4 PTZ00246 proteasome subunit al 100.0 3E-60 6.4E-65 399.0 30.4 230 5-237 2-241 (253)
5 cd03751 proteasome_alpha_type_ 100.0 5.3E-59 1.1E-63 381.4 27.2 210 6-218 2-212 (212)
6 TIGR03633 arc_protsome_A prote 100.0 1.5E-58 3.3E-63 382.3 28.4 220 7-229 2-224 (224)
7 cd03756 proteasome_alpha_arche 100.0 9.4E-58 2E-62 374.4 27.8 210 7-219 1-210 (211)
8 cd03752 proteasome_alpha_type_ 100.0 1.3E-57 2.9E-62 373.9 27.2 210 6-218 1-213 (213)
9 cd03755 proteasome_alpha_type_ 100.0 1.4E-57 3.1E-62 372.2 26.8 206 8-218 1-207 (207)
10 cd03754 proteasome_alpha_type_ 100.0 2.3E-57 5E-62 372.7 26.8 209 7-218 1-215 (215)
11 cd03749 proteasome_alpha_type_ 100.0 3.2E-57 6.9E-62 371.0 27.4 207 8-219 1-211 (211)
12 KOG0184 20S proteasome, regula 100.0 1.5E-57 3.3E-62 357.5 21.0 229 1-233 1-234 (254)
13 cd03753 proteasome_alpha_type_ 100.0 1.5E-56 3.3E-61 367.7 26.7 211 8-218 1-213 (213)
14 cd01911 proteasome_alpha prote 100.0 4.5E-56 9.7E-61 364.0 26.1 208 8-218 1-209 (209)
15 COG0638 PRE1 20S proteasome, a 100.0 1.7E-55 3.7E-60 365.5 28.9 226 6-236 1-231 (236)
16 KOG0181 20S proteasome, regula 100.0 1.4E-56 3E-61 345.6 20.1 231 4-237 2-233 (233)
17 KOG0178 20S proteasome, regula 100.0 2.1E-54 4.6E-59 337.2 22.1 228 6-236 3-239 (249)
18 KOG0183 20S proteasome, regula 100.0 7.1E-55 1.5E-59 340.7 18.9 226 6-236 2-232 (249)
19 KOG0863 20S proteasome, regula 100.0 8.4E-53 1.8E-57 332.3 21.8 227 4-235 2-234 (264)
20 KOG0182 20S proteasome, regula 100.0 1.2E-51 2.6E-56 322.1 23.7 231 4-237 5-242 (246)
21 TIGR03691 20S_bact_alpha prote 100.0 1.6E-45 3.5E-50 303.9 25.6 208 16-234 8-228 (228)
22 TIGR03690 20S_bact_beta protea 100.0 1.3E-45 2.9E-50 303.8 24.7 201 33-237 1-214 (219)
23 PTZ00488 Proteasome subunit be 100.0 1.9E-45 4.1E-50 306.9 25.2 201 30-237 35-238 (247)
24 cd03760 proteasome_beta_type_4 100.0 4E-45 8.6E-50 296.6 22.9 189 33-226 1-196 (197)
25 cd03758 proteasome_beta_type_2 100.0 1.2E-44 2.6E-49 292.8 23.7 186 35-225 2-191 (193)
26 cd03761 proteasome_beta_type_5 100.0 3.5E-44 7.6E-49 289.0 24.3 184 35-225 1-187 (188)
27 cd03759 proteasome_beta_type_3 100.0 2.9E-44 6.4E-49 291.0 23.3 182 33-221 2-187 (195)
28 TIGR03634 arc_protsome_B prote 100.0 9.2E-44 2E-48 286.0 23.9 181 34-221 1-183 (185)
29 cd03764 proteasome_beta_archea 100.0 4.3E-43 9.3E-48 282.8 24.6 184 35-225 1-187 (188)
30 cd03757 proteasome_beta_type_1 100.0 2.4E-43 5.2E-48 289.1 22.6 184 31-221 5-200 (212)
31 cd03763 proteasome_beta_type_7 100.0 1.2E-42 2.7E-47 280.3 24.2 185 35-227 1-188 (189)
32 cd03765 proteasome_beta_bacter 100.0 3.6E-42 7.8E-47 284.4 24.9 183 35-221 1-200 (236)
33 cd03762 proteasome_beta_type_6 100.0 6.4E-42 1.4E-46 275.9 23.9 181 35-223 1-185 (188)
34 PF00227 Proteasome: Proteasom 100.0 5.2E-42 1.1E-46 276.6 21.8 185 31-218 1-190 (190)
35 cd01912 proteasome_beta protea 100.0 1.5E-40 3.2E-45 268.2 24.2 183 35-224 1-187 (189)
36 cd01906 proteasome_protease_Hs 100.0 2E-40 4.4E-45 265.6 24.8 179 35-218 1-182 (182)
37 KOG0175 20S proteasome, regula 100.0 3.9E-37 8.4E-42 247.0 18.4 197 31-234 68-267 (285)
38 KOG0177 20S proteasome, regula 100.0 2.3E-36 5E-41 232.7 17.2 187 35-226 2-192 (200)
39 KOG0179 20S proteasome, regula 100.0 1.8E-35 4E-40 230.9 18.3 184 31-221 26-223 (235)
40 KOG0173 20S proteasome, regula 100.0 1E-34 2.2E-39 232.7 17.0 187 27-221 30-218 (271)
41 KOG0185 20S proteasome, regula 100.0 4.8E-35 1E-39 232.3 14.3 217 10-231 11-241 (256)
42 KOG0174 20S proteasome, regula 100.0 2.2E-34 4.7E-39 222.5 15.8 196 30-233 15-216 (224)
43 KOG0180 20S proteasome, regula 100.0 5.9E-32 1.3E-36 205.3 17.8 183 32-221 6-192 (204)
44 PRK05456 ATP-dependent proteas 100.0 2.5E-31 5.4E-36 209.8 18.7 165 34-217 1-171 (172)
45 cd01913 protease_HslV Protease 100.0 5.7E-30 1.2E-34 200.7 18.3 163 35-217 1-170 (171)
46 cd01901 Ntn_hydrolase The Ntn 100.0 4.2E-29 9.1E-34 195.0 22.7 161 35-201 1-163 (164)
47 TIGR03692 ATP_dep_HslV ATP-dep 100.0 1.7E-29 3.8E-34 198.0 18.0 164 35-217 1-170 (171)
48 PF10584 Proteasome_A_N: Prote 99.5 6.8E-15 1.5E-19 75.5 1.8 23 8-30 1-23 (23)
49 COG5405 HslV ATP-dependent pro 99.5 5E-13 1.1E-17 101.4 10.6 168 33-219 3-176 (178)
50 COG3484 Predicted proteasome-t 99.4 3E-12 6.6E-17 100.6 12.6 186 35-221 2-201 (255)
51 COG4079 Uncharacterized protei 97.0 0.034 7.4E-07 45.8 13.6 170 35-234 2-197 (293)
52 PF09894 DUF2121: Uncharacteri 96.9 0.012 2.6E-07 46.8 9.7 153 35-221 2-180 (194)
53 KOG3361 Iron binding protein i 89.9 0.96 2.1E-05 33.9 5.2 44 152-195 71-114 (157)
54 PRK08868 flagellar protein Fla 55.3 51 0.0011 25.3 6.0 49 189-237 73-130 (144)
55 smart00481 POLIIIAc DNA polyme 54.8 17 0.00037 23.3 3.1 32 13-44 6-38 (67)
56 PF08140 Cuticle_1: Crustacean 54.3 22 0.00048 20.9 3.0 29 14-49 5-33 (40)
57 PF07499 RuvA_C: RuvA, C-termi 52.4 9.4 0.0002 23.1 1.4 33 167-199 12-45 (47)
58 cd06404 PB1_aPKC PB1 domain is 47.7 78 0.0017 21.8 5.4 47 184-235 17-66 (83)
59 PRK07738 flagellar protein Fla 46.3 84 0.0018 23.2 5.8 49 189-237 48-105 (117)
60 PRK08452 flagellar protein Fla 44.8 92 0.002 23.2 5.9 28 210-237 81-112 (124)
61 PF11211 DUF2997: Protein of u 42.8 34 0.00073 20.9 2.8 32 152-183 3-34 (48)
62 COG3193 GlcG Uncharacterized p 41.7 99 0.0021 23.6 5.7 35 184-221 5-39 (141)
63 KOG2445 Nuclear pore complex c 38.1 68 0.0015 27.9 4.8 47 14-73 230-287 (361)
64 PRK09732 hypothetical protein; 35.9 1.4E+02 0.003 22.6 5.7 34 185-221 5-38 (134)
65 PF03646 FlaG: FlaG protein; 35.0 59 0.0013 23.2 3.5 27 210-236 65-95 (107)
66 PF06787 UPF0254: Uncharacteri 32.9 1.4E+02 0.0031 23.1 5.4 57 12-88 74-136 (160)
67 PF02609 Exonuc_VII_S: Exonucl 32.1 1.1E+02 0.0025 18.7 4.1 31 174-204 7-37 (53)
68 PF06057 VirJ: Bacterial virul 30.7 62 0.0013 26.1 3.2 66 72-147 2-78 (192)
69 COG0279 GmhA Phosphoheptose is 29.8 59 0.0013 25.7 2.9 37 14-50 115-152 (176)
70 PRK14065 exodeoxyribonuclease 27.3 1.6E+02 0.0035 20.4 4.3 30 173-202 32-61 (86)
71 PF02811 PHP: PHP domain; Int 27.2 55 0.0012 24.8 2.5 31 13-43 7-38 (175)
72 PF08289 Flu_M1_C: Influenza M 26.6 1.7E+02 0.0037 20.1 4.3 47 81-127 41-87 (95)
73 PRK10872 relA (p)ppGpp synthet 25.3 87 0.0019 30.8 3.8 75 9-84 403-490 (743)
74 PF03928 DUF336: Domain of unk 24.5 1.4E+02 0.003 22.1 4.1 33 186-221 2-34 (132)
75 PF14804 Jag_N: Jag N-terminus 22.7 1.4E+02 0.0031 18.5 3.2 29 187-221 5-33 (52)
76 COG0771 MurD UDP-N-acetylmuram 22.1 71 0.0015 29.4 2.4 64 137-201 346-412 (448)
77 COG0822 IscU NifU homolog invo 21.1 3.2E+02 0.0069 21.0 5.6 54 150-204 44-98 (150)
78 PF07676 PD40: WD40-like Beta 20.8 48 0.001 18.5 0.7 11 12-22 13-23 (39)
79 PF01592 NifU_N: NifU-like N t 20.1 2.8E+02 0.0061 20.3 5.0 58 148-205 35-96 (126)
No 1
>KOG0176 consensus 20S proteasome, regulatory subunit alpha type PSMA5/PUP2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-64 Score=389.80 Aligned_cols=237 Identities=81% Similarity=1.201 Sum_probs=229.1
Q ss_pred CCCCCCCCCCCCceeCCCCcccchhhHHHHHhcCCcEEEEEeCCEEEEEEeccCCCCCccCCcccceEEEcCcEEEEEec
Q 026496 1 MFLTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSG 80 (237)
Q Consensus 1 ~~~~~~~yd~~~~~fsp~G~~~qveya~~~~~~G~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~ki~~i~~~i~~~~sG 80 (237)
||++|++||+.+|+||||||+||||||++|++.|+|.|||+.++||||++++|++++++.+++..||++|++||+|++||
T Consensus 1 mfltrseydrgVNTfSpEGRlfQVEYaieAikLGsTaIGv~TkEgVvL~vEKritSpLm~p~sveKi~eid~HIgca~SG 80 (241)
T KOG0176|consen 1 MFLTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGVKTKEGVVLAVEKRITSPLMEPSSVEKIVEIDDHIGCAMSG 80 (241)
T ss_pred CcccHHHhcccccccCCCceeeehhhHHHHHhcCCceeeeeccceEEEEEeccccCcccCchhhhhheehhhceeeeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCC-Cc-CCCCCcceeeEEEEEcCCCCeEEEECCCC
Q 026496 81 LIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGD-EE-SMSRPFGVSLLIAGSDENGPSLYYTDPSG 158 (237)
Q Consensus 81 ~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~-~~-~~~rP~~~~~iv~G~d~~g~~ly~vd~~G 158 (237)
+.+|++.++++.|.+|+++++.|+++|+++.+.+.++++.-+|.... .. .-.|||||++|+||+|++||+||..||+|
T Consensus 81 l~aDarTlve~arv~~qnh~f~Y~e~i~VEs~tq~v~~LaLrFGe~~~~~~~msRPFGValliAG~D~~gpqL~h~dPSG 160 (241)
T KOG0176|consen 81 LIADARTLVERARVETQNHWFTYGEPISVESLTQAVSDLALRFGEGDDEEAIMSRPFGVALLIAGHDETGPQLYHLDPSG 160 (241)
T ss_pred cccchHHHHHHHHHHhhhceeecCCcccHHHHHHHHHHHHhHhCCCcchhhhhcCCcceEEEEeeccCCCceEEEeCCCC
Confidence 99999999999999999999999999999999999999998887764 11 45699999999999999999999999999
Q ss_pred ceeecceEEeCCCchhHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEEeCC--eEEcCHHHHHHHHHh
Q 026496 159 TFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPT--YHLYTPSEVEAVINR 236 (237)
Q Consensus 159 ~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~~~~~~~iei~ii~~~--~~~~~~~ei~~~~~~ 236 (237)
++++|++-|+|+|+..+.+.|++.|+++++++||+.+++..|+.+.+..++..|+++.+|+++ +++++++|++.++++
T Consensus 161 tf~~~~AKAIGSgsEga~~~L~~e~~~~ltL~ea~~~~L~iLkqVMeeKl~~~Nvev~~vt~e~~f~~~t~EE~~~~i~~ 240 (241)
T KOG0176|consen 161 TFIRYKAKAIGSGSEGAESSLQEEYHKDLTLKEAEKIVLKILKQVMEEKLNSNNVEVAVVTPEGEFHIYTPEEVEQVIKR 240 (241)
T ss_pred ceEEecceeccccchHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHhcCccceEEEEEcccCceEecCHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999999998 999999999999986
Q ss_pred C
Q 026496 237 L 237 (237)
Q Consensus 237 ~ 237 (237)
+
T Consensus 241 ~ 241 (241)
T KOG0176|consen 241 L 241 (241)
T ss_pred C
Confidence 4
No 2
>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=9.9e-62 Score=401.96 Aligned_cols=224 Identities=41% Similarity=0.699 Sum_probs=218.2
Q ss_pred CCCCCceeCCCCcccchhhHHHHHhcCCcEEEEEeCCEEEEEEeccCCCCCccCCcccceEEEcCcEEEEEecchhhHHH
Q 026496 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADART 87 (237)
Q Consensus 8 yd~~~~~fsp~G~~~qveya~~~~~~G~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~ 87 (237)
||+++|+||||||++|||||++|+++|+|+|||+++||||||+|++.++++..+++.+||++|++|++|+++|..+|++.
T Consensus 1 yd~~~t~fsp~Grl~QveyA~~av~~G~t~igik~~dgVvlaad~~~~~~l~~~~~~~KI~~I~~~i~~~~sG~~~D~~~ 80 (227)
T cd03750 1 YSFSLTTFSPSGKLVQIEYALAAVSSGAPSVGIKAANGVVLATEKKVPSPLIDESSVHKVEQITPHIGMVYSGMGPDFRV 80 (227)
T ss_pred CCCCCceECCCCeEhHHHHHHHHHHcCCCEEEEEeCCEEEEEEeecCCccccCCCCcceEEEEcCCEEEEEeEcHHhHHH
Confidence 89999999999999999999999999999999999999999999999888887888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCcCCCCCcceeeEEEEEcCCCCeEEEECCCCceeecceEE
Q 026496 88 LVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKA 167 (237)
Q Consensus 88 l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~~~~iv~G~d~~g~~ly~vd~~G~~~~~~~~a 167 (237)
+.+.++.++..|++.++++++++.+++.|++.+|.|++++ +.|||++++||+|||++||+||.+||+|++.+++++|
T Consensus 81 l~~~~r~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~---~~rP~~v~~li~G~D~~g~~Ly~~d~~G~~~~~~~~a 157 (227)
T cd03750 81 LVKKARKIAQQYYLVYGEPIPVSQLVREIASVMQEYTQSG---GVRPFGVSLLIAGWDEGGPYLYQVDPSGSYFTWKATA 157 (227)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCC---CCCChheEEEEEEEeCCCCEEEEECCCCCEEeeeEEE
Confidence 9999999999999999999999999999999999999998 8999999999999998899999999999999999999
Q ss_pred eCCCchhHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEEeCC--eEEcCHHHHHHHH
Q 026496 168 IGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPT--YHLYTPSEVEAVI 234 (237)
Q Consensus 168 ~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~~~~~~~iei~ii~~~--~~~~~~~ei~~~~ 234 (237)
+|+|++.++++||++|+++||++||++++++||..+.++++++.+++|++|+++ ++.++++||++++
T Consensus 158 ~G~g~~~~~~~Le~~~~~~ms~eeai~l~~~~l~~~~~~~l~~~~iev~iv~~~~~~~~~~~~ei~~~~ 226 (227)
T cd03750 158 IGKNYSNAKTFLEKRYNEDLELEDAIHTAILTLKEGFEGQMTEKNIEIGICGETKGFRLLTPAEIKDYL 226 (227)
T ss_pred ECCCCHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEEECCCCEEECCHHHHHHHh
Confidence 999999999999999999999999999999999999988888899999999995 9999999999987
No 3
>PRK03996 proteasome subunit alpha; Provisional
Probab=100.00 E-value=1.4e-61 Score=404.59 Aligned_cols=234 Identities=50% Similarity=0.841 Sum_probs=226.2
Q ss_pred CCCCCCCCCCCCceeCCCCcccchhhHHHHHhcCCcEEEEEeCCEEEEEEeccCCCCCccCCcccceEEEcCcEEEEEec
Q 026496 1 MFLTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSG 80 (237)
Q Consensus 1 ~~~~~~~yd~~~~~fsp~G~~~qveya~~~~~~G~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~ki~~i~~~i~~~~sG 80 (237)
|+++.++||+++|+||||||++|||||++|+++|+|+|||+++||||||+|++.++++..+++.+||++|+++++++++|
T Consensus 3 ~~~~~~~y~~~~~~fsp~Gr~~Q~eya~~av~~G~t~igik~~dgVvlaad~r~~~~~~~~~~~~KI~~I~~~i~~~~sG 82 (241)
T PRK03996 3 MQPQQMGYDRAITIFSPDGRLYQVEYAREAVKRGTTAVGVKTKDGVVLAVDKRITSPLIEPSSIEKIFKIDDHIGAASAG 82 (241)
T ss_pred CCccccccCCCCceECCCCeEhHHHHHHHHHHhCCCEEEEEeCCEEEEEEeccCCCcccCCCccceEEEEcCCEEEEEcc
Confidence 67789999999999999999999999999999999999999999999999999988777778899999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCcCCCCCcceeeEEEEEcCCCCeEEEECCCCce
Q 026496 81 LIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTF 160 (237)
Q Consensus 81 ~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~~~~iv~G~d~~g~~ly~vd~~G~~ 160 (237)
..+|++.+.++++.++..|++.++++++++.+++.+++.+|.|++++ +.|||++++||||+|++||+||.+||+|++
T Consensus 83 ~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~---~~rP~~~~~ilaG~d~~gp~Ly~id~~G~~ 159 (241)
T PRK03996 83 LVADARVLIDRARVEAQINRLTYGEPIGVETLTKKICDHKQQYTQHG---GVRPFGVALLIAGVDDGGPRLFETDPSGAY 159 (241)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCC---CccchheEEEEEEEeCCcCEEEEECCCCCe
Confidence 99999999999999999999999999999999999999999999998 999999999999999989999999999999
Q ss_pred eecceEEeCCCchhHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEEeCC---eEEcCHHHHHHHHHhC
Q 026496 161 WQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPT---YHLYTPSEVEAVINRL 237 (237)
Q Consensus 161 ~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~~~~~~~iei~ii~~~---~~~~~~~ei~~~~~~~ 237 (237)
.+++++|+|.|++.++++||+.|+++|+++||++++++||..+.+++.++++++|++++++ ++.++++|++++++++
T Consensus 160 ~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eeai~l~~~al~~~~~~~~~~~~i~i~ii~~~~~~~~~~~~~ei~~~~~~~ 239 (241)
T PRK03996 160 LEYKATAIGAGRDTVMEFLEKNYKEDLSLEEAIELALKALAKANEGKLDPENVEIAYIDVETKKFRKLSVEEIEKYLEKL 239 (241)
T ss_pred ecceEEEECCCcHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHhccCCCCCcEEEEEEECCCCcEEECCHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999988778889999999987 9999999999999874
No 4
>PTZ00246 proteasome subunit alpha; Provisional
Probab=100.00 E-value=3e-60 Score=398.98 Aligned_cols=230 Identities=40% Similarity=0.667 Sum_probs=218.7
Q ss_pred CCCCCCCCceeCCCCcccchhhHHHHHhcCCcEEEEEeCCEEEEEEeccCCCCCcc-CCcccceEEEcCcEEEEEecchh
Q 026496 5 RTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLE-PSSVEKIMEIDEHIGCAMSGLIA 83 (237)
Q Consensus 5 ~~~yd~~~~~fsp~G~~~qveya~~~~~~G~t~vgi~~~dgVvla~d~~~~~~~~~-~~~~~ki~~i~~~i~~~~sG~~~ 83 (237)
.++||+++|+|||||||+|||||++|+++|+|+|||+++||||||+|++.+++++. +++.+||++|+++++++++|..+
T Consensus 2 ~~~yd~~~~~fsp~Grl~QvEYA~~av~~g~t~Igik~~dgVvlaad~r~s~~~~~~~~~~~KI~~I~~~i~~~~sG~~~ 81 (253)
T PTZ00246 2 SRRYDSRTTTFSPEGRLYQVEYALEAINNASLTVGILCKEGVILGADKPISSKLLDPGKINEKIYKIDSHIFCAVAGLTA 81 (253)
T ss_pred CCccCCCCceECCCCEEhHHHHHHHHHHhCCCEEEEEECCEEEEEEecCCCCcCccCCCCcccEEEecCCEEEEEEEcHH
Confidence 45899999999999999999999999999999999999999999999999987655 45689999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCcCCCCCcceeeEEEEEcC-CCCeEEEECCCCceee
Q 026496 84 DARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDE-NGPSLYYTDPSGTFWQ 162 (237)
Q Consensus 84 D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~~~~iv~G~d~-~g~~ly~vd~~G~~~~ 162 (237)
|++.+.+.++.++..|++.++.+++++.+++.+++.+|.|++++ +.|||+|++||+|||+ +||+||.+||+|++.+
T Consensus 82 D~~~l~~~~r~~~~~~~~~~~~~~~v~~l~~~l~~~~q~~~~~~---~~rP~~v~~li~G~D~~~gp~Ly~~D~~Gs~~~ 158 (253)
T PTZ00246 82 DANILINQCRLYAQRYRYTYGEPQPVEQLVVQICDLKQSYTQFG---GLRPFGVSFLFAGYDENLGYQLYHTDPSGNYSG 158 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcccc---CcccCCEEEEEEEEeCCCCcEEEEECCCCCEec
Confidence 99999999999999999999999999999999999999999998 9999999999999995 6899999999999999
Q ss_pred cceEEeCCCchhHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhcccC-CCCcEEEEEEeCC-------eEEcCHHHHHHHH
Q 026496 163 CNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKV-TPNNVDIARVAPT-------YHLYTPSEVEAVI 234 (237)
Q Consensus 163 ~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~~~-~~~~iei~ii~~~-------~~~~~~~ei~~~~ 234 (237)
++++|+|+|+..++++||++|+++|+++||++++.+||+.+.+++. ++++++|++|+++ |++++++||++++
T Consensus 159 ~~~~a~G~gs~~~~~~Le~~~~~~ms~eeai~l~~~al~~~~~~d~~s~~~vev~ii~~~~~~~~~~~~~l~~~ei~~~l 238 (253)
T PTZ00246 159 WKATAIGQNNQTAQSILKQEWKEDLTLEQGLLLAAKVLTKSMDSTSPKADKIEVGILSHGETDGEPIQKMLSEKEIAELL 238 (253)
T ss_pred ceEEEECCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCCcCCCCCeEECCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999876 6889999999963 8999999999999
Q ss_pred HhC
Q 026496 235 NRL 237 (237)
Q Consensus 235 ~~~ 237 (237)
+++
T Consensus 239 ~~~ 241 (253)
T PTZ00246 239 KKV 241 (253)
T ss_pred HHH
Confidence 864
No 5
>cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=5.3e-59 Score=381.39 Aligned_cols=210 Identities=41% Similarity=0.639 Sum_probs=202.3
Q ss_pred CCCCCCCceeCCCCcccchhhHHHHHhcCCcEEEEEeCCEEEEEEeccCCCCCccCCcccceEEEcCcEEEEEecchhhH
Q 026496 6 TEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADA 85 (237)
Q Consensus 6 ~~yd~~~~~fsp~G~~~qveya~~~~~~G~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~ki~~i~~~i~~~~sG~~~D~ 85 (237)
++||+++|+||||||++|||||++|+++|+|+|||+++||||||+|++.++.+...++.+||++|+++++++++|..+|+
T Consensus 2 ~~yd~~~t~fsp~Grl~Qveya~~a~~~G~tvIgik~kdgVvla~d~r~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~ 81 (212)
T cd03751 2 TGYDLSASTFSPDGRVFQVEYANKAVENSGTAIGIRCKDGVVLAVEKLVTSKLYEPGSNKRIFNVDRHIGIAVAGLLADG 81 (212)
T ss_pred CCccCCCceECCCCcchHHHHHHHHHhcCCCEEEEEeCCEEEEEEEccccccccCcchhcceeEecCcEEEEEEEChHhH
Confidence 68999999999999999999999999999999999999999999999998877777788999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCcCCCCCcceeeEEEEEcCCCCeEEEECCCCceeecce
Q 026496 86 RTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNA 165 (237)
Q Consensus 86 ~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~~~~iv~G~d~~g~~ly~vd~~G~~~~~~~ 165 (237)
+.+.++++.+++.|++.++++++++.++++|++.+|.|+++. +.|||++++|++|+|++||+||.+||+|++.++++
T Consensus 82 ~~l~~~~r~~~~~y~~~~~~~~~v~~la~~ls~~~~~~t~~~---~~rP~~vs~li~G~D~~gp~Ly~~D~~Gs~~~~~~ 158 (212)
T cd03751 82 RHLVSRAREEAENYRDNYGTPIPVKVLADRVAMYMHAYTLYS---SVRPFGCSVLLGGYDSDGPQLYMIEPSGVSYGYFG 158 (212)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccCC---CcCCceEEEEEEEEeCCcCEEEEECCCCCEEeeEE
Confidence 999999999999999999999999999999999999999998 99999999999999988999999999999999999
Q ss_pred EEeCCCchhHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhccc-CCCCcEEEEEE
Q 026496 166 KAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEK-VTPNNVDIARV 218 (237)
Q Consensus 166 ~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~~-~~~~~iei~ii 218 (237)
+|+|+|+..++++||++|+++||++||++++.++|..+.+.. ..+.++||.++
T Consensus 159 ~a~G~g~~~a~~~Lek~~~~dms~eeai~l~~~~L~~~~~~~~~~~~~iei~~~ 212 (212)
T cd03751 159 CAIGKGKQAAKTELEKLKFSELTCREAVKEAAKIIYIVHDEIKDKAFELELSWV 212 (212)
T ss_pred EEECCCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhhccCCCCccEEEEEC
Confidence 999999999999999999999999999999999999999854 67889999874
No 6
>TIGR03633 arc_protsome_A proteasome endopeptidase complex, archaeal, alpha subunit. This protein family describes the archaeal proteasome alpha subunit, homologous to both the beta subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=1.5e-58 Score=382.31 Aligned_cols=220 Identities=51% Similarity=0.880 Sum_probs=211.4
Q ss_pred CCCCCCceeCCCCcccchhhHHHHHhcCCcEEEEEeCCEEEEEEeccCCCCCccCCcccceEEEcCcEEEEEecchhhHH
Q 026496 7 EYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADAR 86 (237)
Q Consensus 7 ~yd~~~~~fsp~G~~~qveya~~~~~~G~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~ 86 (237)
+||.++|+|||||||+|||||++|+++|+|+|||+++||||||+|+|.++++..+++.+||++|++++++++||..+|++
T Consensus 2 ~~~~~~~~f~p~Grl~Qieya~~av~~G~tvigi~~~dgvvlaad~r~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~ 81 (224)
T TIGR03633 2 GYDRAITVFSPDGRLYQVEYAREAVKRGTTAVGIKTKDGVVLAVDKRITSKLVEPSSIEKIFKIDDHIGAATSGLVADAR 81 (224)
T ss_pred CCCCCCceECCCCeEeHHHHHHHHHHcCCCEEEEEECCEEEEEEeccCCccccCCCccceEEEECCCEEEEEeecHHhHH
Confidence 79999999999999999999999999999999999999999999999987777778899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCcCCCCCcceeeEEEEEcCCCCeEEEECCCCceeecceE
Q 026496 87 TLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAK 166 (237)
Q Consensus 87 ~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~~~~iv~G~d~~g~~ly~vd~~G~~~~~~~~ 166 (237)
.+.+.++.++..|++.++++++++.+++.+++.+|.|++++ +.|||++++||+|+|+++|+||.+||.|++.+++++
T Consensus 82 ~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~~~~---~~rP~~v~~ll~G~d~~~~~Ly~~D~~G~~~~~~~~ 158 (224)
T TIGR03633 82 VLIDRARIEAQINRLTYGEPIDVETLAKKICDLKQQYTQHG---GVRPFGVALLIAGVDDGGPRLFETDPSGALLEYKAT 158 (224)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCC---CccccceEEEEEEEeCCcCEEEEECCCCCeecceEE
Confidence 99999999999999999999999999999999999999998 899999999999999889999999999999999999
Q ss_pred EeCCCchhHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEEeCC---eEEcCHHH
Q 026496 167 AIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPT---YHLYTPSE 229 (237)
Q Consensus 167 a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~~~~~~~iei~ii~~~---~~~~~~~e 229 (237)
++|+++.+++++|++.|+++|+.+||++++++||..+.++..++++++|++|+++ |+.++++|
T Consensus 159 a~G~g~~~~~~~L~~~~~~~~~~eeai~l~~~al~~~~~d~~~~~~i~i~ii~~~g~~~~~~~~~~ 224 (224)
T TIGR03633 159 AIGAGRQAVTEFLEKEYREDLSLDEAIELALKALYSAVEDKLTPENVEVAYITVEDKKFRKLSVEE 224 (224)
T ss_pred EECCCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEEEcCCCcEEECCCCC
Confidence 9999999999999999999999999999999999999884457888999999986 89988875
No 7
>cd03756 proteasome_alpha_archeal proteasome_alpha_archeal. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=9.4e-58 Score=374.39 Aligned_cols=210 Identities=54% Similarity=0.903 Sum_probs=204.2
Q ss_pred CCCCCCceeCCCCcccchhhHHHHHhcCCcEEEEEeCCEEEEEEeccCCCCCccCCcccceEEEcCcEEEEEecchhhHH
Q 026496 7 EYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADAR 86 (237)
Q Consensus 7 ~yd~~~~~fsp~G~~~qveya~~~~~~G~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~ 86 (237)
+||+++|+||||||++|+|||.+|+++|+|+|||+++||||||+|++.++++..+++.+||++|++++++++||..+|++
T Consensus 1 ~y~~~~~~fsp~G~l~Q~eya~~av~~G~t~igik~~dgvvla~d~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~ 80 (211)
T cd03756 1 GYDRAITVFSPDGRLYQVEYAREAVKRGTTALGIKCKEGVVLAVDKRITSKLVEPESIEKIYKIDDHVGAATSGLVADAR 80 (211)
T ss_pred CCCCCCceECCCCeEhHHHHHHHHHHcCCCEEEEEECCEEEEEEeccCCCcccCCCccceEEEEcCCEEEEEecCHHHHH
Confidence 59999999999999999999999999999999999999999999999987777778899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCcCCCCCcceeeEEEEEcCCCCeEEEECCCCceeecceE
Q 026496 87 TLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAK 166 (237)
Q Consensus 87 ~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~~~~iv~G~d~~g~~ly~vd~~G~~~~~~~~ 166 (237)
.+.+.++.+++.|++.++++++++.+++.+++.+|.|++++ +.|||++++||+|+|++||+||.+||+|++.+++++
T Consensus 81 ~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~~~~~---~~rP~~v~~ll~G~D~~~~~ly~vd~~G~~~~~~~~ 157 (211)
T cd03756 81 VLIDRARVEAQIHRLTYGEPIDVEVLVKKICDLKQQYTQHG---GVRPFGVALLIAGVDDGGPRLFETDPSGAYNEYKAT 157 (211)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCC---CeechhEEEEEEEEeCCCCEEEEECCCCCeeeeEEE
Confidence 99999999999999999999999999999999999999998 999999999999999989999999999999999999
Q ss_pred EeCCCchhHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEEe
Q 026496 167 AIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVA 219 (237)
Q Consensus 167 a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~~~~~~~iei~ii~ 219 (237)
++|++++.++++||++|+++|+++||++++.+||..+.++++++.+++|++|+
T Consensus 158 a~G~g~~~~~~~Le~~~~~~m~~~ea~~l~~~~l~~~~~~~~~~~~~~v~ii~ 210 (211)
T cd03756 158 AIGSGRQAVTEFLEKEYKEDMSLEEAIELALKALYAALEENETPENVEIAYVT 210 (211)
T ss_pred EECCCCHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEEe
Confidence 99999999999999999999999999999999999999998888899999986
No 8
>cd03752 proteasome_alpha_type_4 proteasome_alpha_type_4. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.3e-57 Score=373.95 Aligned_cols=210 Identities=44% Similarity=0.728 Sum_probs=201.0
Q ss_pred CCCCCCCceeCCCCcccchhhHHHHHhcCCcEEEEEeCCEEEEEEeccCCCCCcc-CCcccceEEEcCcEEEEEecchhh
Q 026496 6 TEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLE-PSSVEKIMEIDEHIGCAMSGLIAD 84 (237)
Q Consensus 6 ~~yd~~~~~fsp~G~~~qveya~~~~~~G~t~vgi~~~dgVvla~d~~~~~~~~~-~~~~~ki~~i~~~i~~~~sG~~~D 84 (237)
++||+++|+||||||++|||||++|+++|+|+|||+++||||||+|++.++++.. +++.+||++|++++++++||..+|
T Consensus 1 ~~yd~~~~~fsp~Grl~Qveya~~a~~~G~t~igi~~~dgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D 80 (213)
T cd03752 1 RRYDSRTTIFSPEGRLYQVEYAMEAISHAGTCLGILAKDGIVLAAEKKVTSKLLDQSFSSEKIYKIDDHIACAVAGITSD 80 (213)
T ss_pred CCcCCCCceECCCCEEhHHHhHHHHHhcCCCEEEEEeCCEEEEEEEeccCCcccCCCcCcceEEEecCCEEEEEecChHh
Confidence 4799999999999999999999999999999999999999999999999987655 458899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCcCCCCCcceeeEEEEEcC-CCCeEEEECCCCceeec
Q 026496 85 ARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDE-NGPSLYYTDPSGTFWQC 163 (237)
Q Consensus 85 ~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~~~~iv~G~d~-~g~~ly~vd~~G~~~~~ 163 (237)
++.+.++++.++..|+++++++++++.+++.|+..+|.|++.+ +.|||++++|++|||+ .||+||.+||+|++.++
T Consensus 81 ~~~l~~~~r~~~~~~~~~~~~~i~v~~la~~ls~~~~~~t~~~---~~RP~~v~~li~G~D~~~g~~ly~~d~~G~~~~~ 157 (213)
T cd03752 81 ANILINYARLIAQRYLYSYQEPIPVEQLVQRLCDIKQGYTQYG---GLRPFGVSFLYAGWDKHYGFQLYQSDPSGNYSGW 157 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcCC---CcccceeEEEEEEEeCCCCCEEEEECCCCCeeee
Confidence 9999999999999999999999999999999999999999988 9999999999999995 68999999999999999
Q ss_pred ceEEeCCCchhHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhcccC-CCCcEEEEEE
Q 026496 164 NAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKV-TPNNVDIARV 218 (237)
Q Consensus 164 ~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~~~-~~~~iei~ii 218 (237)
+++|+|+++..++++||+.|+++|+++||++++.+||..+.+|+. ++.+++|+++
T Consensus 158 ~~~a~G~gs~~~~~~Le~~y~~~ms~eea~~l~~~al~~~~~r~~~~~~~~ei~~~ 213 (213)
T cd03752 158 KATAIGNNNQAAQSLLKQDYKDDMTLEEALALAVKVLSKTMDSTKLTSEKLEFATL 213 (213)
T ss_pred eEEEECCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEC
Confidence 999999999999999999999999999999999999999999875 6788999875
No 9
>cd03755 proteasome_alpha_type_7 proteasome_alpha_type_7. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.4e-57 Score=372.17 Aligned_cols=206 Identities=42% Similarity=0.712 Sum_probs=198.3
Q ss_pred CCCCCceeCCCCcccchhhHHHHHhcCCcEEEEEeCCEEEEEEeccCCCCCccCCcccceEEEcCcEEEEEecchhhHHH
Q 026496 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADART 87 (237)
Q Consensus 8 yd~~~~~fsp~G~~~qveya~~~~~~G~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~ 87 (237)
||.++|+||||||++|||||++|+++|+|+|||+++||||||+|++.+..+..++..+||++|++++++++||+.+|++.
T Consensus 1 ~d~~~~~fsp~Gr~~Qveya~~av~~G~t~Igik~~dgVvlaad~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~ 80 (207)
T cd03755 1 YDRAITVFSPDGHLFQVEYAQEAVRKGTTAVGVRGKDCVVLGVEKKSVAKLQDPRTVRKICMLDDHVCLAFAGLTADARV 80 (207)
T ss_pred CCCCCceECCCCeEeHHHHHHHHHHcCCCEEEEEeCCEEEEEEecCCCCcccCCCccCcEEEECCCEEEEEecchhhHHH
Confidence 89999999999999999999999999999999999999999999998777776778899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCcCCCCCcceeeEEEEEcCC-CCeEEEECCCCceeecceE
Q 026496 88 LVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDEN-GPSLYYTDPSGTFWQCNAK 166 (237)
Q Consensus 88 l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~~~~iv~G~d~~-g~~ly~vd~~G~~~~~~~~ 166 (237)
+.++++.+++.|++.++++++++.+++.+++.+|+|++++ +.|||++++|++|+|++ ||+||.+||+|++.+++++
T Consensus 81 l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~y~~~~---~~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~ 157 (207)
T cd03755 81 LINRARLECQSHRLTVEDPVTVEYITRYIAGLQQRYTQSG---GVRPFGISTLIVGFDPDGTPRLYQTDPSGTYSAWKAN 157 (207)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccc---CcccceeEEEEEEEeCCCCeEEEEECCCcCEEcceEE
Confidence 9999999999999999999999999999999999999998 99999999999999964 8999999999999999999
Q ss_pred EeCCCchhHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEE
Q 026496 167 AIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARV 218 (237)
Q Consensus 167 a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~~~~~~~iei~ii 218 (237)
|+|+|++.++++||++|+++|+.+||++++.+||..+.+ .++.++||+++
T Consensus 158 a~G~gs~~~~~~Le~~~~~~ms~eeai~l~~~~l~~~~~--~~~~~~e~~~~ 207 (207)
T cd03755 158 AIGRNSKTVREFLEKNYKEEMTRDDTIKLAIKALLEVVQ--SGSKNIELAVM 207 (207)
T ss_pred EECCCCHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhC--CCCCeEEEEEC
Confidence 999999999999999999999999999999999999987 67788999875
No 10
>cd03754 proteasome_alpha_type_6 proteasome_alpha_type_6. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.3e-57 Score=372.69 Aligned_cols=209 Identities=35% Similarity=0.669 Sum_probs=200.0
Q ss_pred CCCCCCceeCCCCcccchhhHHHHHhc-CCcEEEEEeCCEEEEEEeccCCCCCccCCcccceEEEcCcEEEEEecchhhH
Q 026496 7 EYDRGVNTFSPEGRLFQVEYAIEAIKL-GSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADA 85 (237)
Q Consensus 7 ~yd~~~~~fsp~G~~~qveya~~~~~~-G~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~ki~~i~~~i~~~~sG~~~D~ 85 (237)
+||+++|+||||||++|||||++|+++ |+|+|||+++||||||+|+|.+.+++..+..+||++|+++++|++||+.+|+
T Consensus 1 ~yd~~~~~fsp~Grl~Qveya~~a~~~~g~t~igi~~~d~Vvlaad~r~~~~~i~~~~~~Ki~~I~~~i~~~~sG~~~D~ 80 (215)
T cd03754 1 GFDRHITIFSPEGRLYQVEYAFKAVKNAGLTSVAVRGKDCAVVVTQKKVPDKLIDPSTVTHLFRITDEIGCVMTGMIADS 80 (215)
T ss_pred CCCCCCeeECCCCeEeHHHhHHHHHhcCCccEEEEEeCCEEEEEEeccccccccCCcccCceEEEcCCEEEEEEechhhH
Confidence 599999999999999999999999975 7899999999999999999998877666688999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCcCCCCCcceeeEEEEEcC-CCCeEEEECCCCceeecc
Q 026496 86 RTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDE-NGPSLYYTDPSGTFWQCN 164 (237)
Q Consensus 86 ~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~~~~iv~G~d~-~g~~ly~vd~~G~~~~~~ 164 (237)
+.+.++++.++..|+++++++++++.+|+.+++++|.|+++. +.|||++++|+||+|+ +||+||++||+|++.+++
T Consensus 81 ~~l~~~~r~~~~~~~~~~~~~i~v~~la~~ls~~~q~yt~~~---~~RP~~v~~ii~G~D~~~gp~Ly~~Dp~Gs~~~~~ 157 (215)
T cd03754 81 RSQVQRARYEAAEFKYKYGYEMPVDVLAKRIADINQVYTQHA---YMRPLGVSMILIGIDEELGPQLYKCDPAGYFAGYK 157 (215)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhCCC---CCcCCeeEEEEEEEeCCCCeEEEEEcCCccEEeEE
Confidence 999999999999999999999999999999999999999998 9999999999999995 689999999999999999
Q ss_pred eEEeCCCchhHHHHHHhhcCCC--C--CHHHHHHHHHHHHHHHhcccCCCCcEEEEEE
Q 026496 165 AKAIGSGSEGADSSLQEQYNKD--L--TLQEAETIALSILKQVMEEKVTPNNVDIARV 218 (237)
Q Consensus 165 ~~a~G~g~~~~~~~Le~~~~~~--~--s~~ea~~l~~~~l~~~~~~~~~~~~iei~ii 218 (237)
++|+|+|++.++++||++|+++ | +.+||++++++||..+.+++++++++||++|
T Consensus 158 ~~a~G~gs~~~~~~Le~~~~~~~~~~~s~eeai~l~~~al~~~~~rd~~~~~~ei~~~ 215 (215)
T cd03754 158 ATAAGVKEQEATNFLEKKLKKKPDLIESYEETVELAISCLQTVLSTDFKATEIEVGVV 215 (215)
T ss_pred EEEECCCcHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEC
Confidence 9999999999999999999995 7 9999999999999999999998889999875
No 11
>cd03749 proteasome_alpha_type_1 proteasome_alpha_type_1. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.2e-57 Score=371.00 Aligned_cols=207 Identities=44% Similarity=0.672 Sum_probs=198.0
Q ss_pred CCCCCceeCCCCcccchhhHHHHHhcCCcEEEEEeCCEEEEEEeccCCCCCccCCcccceEEEcCcEEEEEecchhhHHH
Q 026496 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADART 87 (237)
Q Consensus 8 yd~~~~~fsp~G~~~qveya~~~~~~G~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~ 87 (237)
||+++|+||||||++|||||++|+++|+|+|||+++||||||+|++.++++ .++.+||++|++++++++||+.+|++.
T Consensus 1 yd~~~t~fsp~Grl~Qveya~~av~~G~t~IgIk~~dgVvlaad~r~~~~l--~~~~~KI~~I~~~i~~~~sG~~~D~~~ 78 (211)
T cd03749 1 YDTDVTTWSPQGRLFQVEYAMEAVKQGSATVGLKSKTHAVLVALKRATSEL--SSYQKKIFKVDDHIGIAIAGLTADARV 78 (211)
T ss_pred CCCCCceECCCCeEeHHHHHHHHHhcCCCEEEEEeCCEEEEEEeccCcccc--CCccccEEEeCCCEEEEEEeChHhHHH
Confidence 899999999999999999999999999999999999999999999977664 345699999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCcCCCCCcceeeEEEEEcCCCCeEEEECCCCceeecceEE
Q 026496 88 LVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKA 167 (237)
Q Consensus 88 l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~~~~iv~G~d~~g~~ly~vd~~G~~~~~~~~a 167 (237)
+.++++.++..|+++++++++++.+++.+++.+|.|+++. +.|||+|++||+|||++||+||.+||+|++.+++++|
T Consensus 79 l~~~~r~~~~~~~~~~~~~~~v~~la~~is~~~~~~t~~~---~~rP~~v~~ii~G~D~~gp~Ly~~Dp~G~~~~~~~~a 155 (211)
T cd03749 79 LSRYMRQECLNYRFVYDSPIPVSRLVSKVAEKAQINTQRY---GRRPYGVGLLIAGYDESGPHLFQTCPSGNYFEYKATS 155 (211)
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccc---CCCCceEEEEEEEEcCCCCeEEEECCCcCEeeeeEEE
Confidence 9999999999999999999999999999999999999988 8999999999999998899999999999999999999
Q ss_pred eCCCchhHHHHHHhhcC--CCCCHHHHHHHHHHHHHHHhccc--CCCCcEEEEEEe
Q 026496 168 IGSGSEGADSSLQEQYN--KDLTLQEAETIALSILKQVMEEK--VTPNNVDIARVA 219 (237)
Q Consensus 168 ~G~g~~~~~~~Le~~~~--~~~s~~ea~~l~~~~l~~~~~~~--~~~~~iei~ii~ 219 (237)
+|+|++.++++||++|+ ++|+.+||+++++++|+.+.+++ +++.+|||++|+
T Consensus 156 ~G~g~~~a~~~Le~~~~~~~~ms~ee~i~~~~~~l~~~~~~~~~~~~~~iei~ii~ 211 (211)
T cd03749 156 IGARSQSARTYLERHFEEFEDCSLEELIKHALRALRETLPGEQELTIKNVSIAIVG 211 (211)
T ss_pred ECCCcHHHHHHHHHhhccccCCCHHHHHHHHHHHHHHHhccCCCCCCCcEEEEEEC
Confidence 99999999999999998 59999999999999999999875 778899999984
No 12
>KOG0184 consensus 20S proteasome, regulatory subunit alpha type PSMA3/PRE10 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-57 Score=357.45 Aligned_cols=229 Identities=38% Similarity=0.588 Sum_probs=217.2
Q ss_pred CCCCCCCCCCCCceeCCCCcccchhhHHHHHhcCCcEEEEEeCCEEEEEEeccCCCCCccCCcccceEEEcCcEEEEEec
Q 026496 1 MFLTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSG 80 (237)
Q Consensus 1 ~~~~~~~yd~~~~~fsp~G~~~qveya~~~~~~G~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~ki~~i~~~i~~~~sG 80 (237)
|++++++||++.++|||+||++|+|||+||+.+|+||||||||||||+++++-++++|+.+....||+.|++||+|+++|
T Consensus 1 MSsIGtGyDls~s~fSpdGrvfQveYA~KAven~~T~IGIk~kdGVVl~vEKli~SkLy~p~sn~ri~~V~r~iG~avaG 80 (254)
T KOG0184|consen 1 MSSIGTGYDLSASTFSPDGRVFQVEYAQKAVENSGTCIGIKCKDGVVLAVEKLITSKLYEPGSNERIFSVDRHIGMAVAG 80 (254)
T ss_pred CCcccccccccceeeCCCCceehHHHHHHHHhcCCcEEEEecCCeEEEEEeeeecccccccCCCCceEeecccccEEEec
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCcCCCCCcceeeEEEEEcCCCCeEEEECCCCce
Q 026496 81 LIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTF 160 (237)
Q Consensus 81 ~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~~~~iv~G~d~~g~~ly~vd~~G~~ 160 (237)
+.+|.+.+..++|.++..|+.+|+.++|...++..|+++.|.||.++ ..||||++.|+++||++||+||+++|+|..
T Consensus 81 l~~Dg~~l~~~ar~ea~~~~~~y~~piP~~~la~rva~yvh~~Tly~---~vRpfG~~~~~~~yd~~g~~LymiepSG~~ 157 (254)
T KOG0184|consen 81 LIPDGRHLVNRARDEAASWRKNYGDPIPGKHLADRVADYVHAFTLYS---SVRPFGASTILGSYDDEGPQLYMIEPSGSS 157 (254)
T ss_pred cccchHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHhhhheeehhh---ccccccceEEEEEEeCCCceEEEEcCCCCc
Confidence 99999999999999999999999999999999999999999999998 999999999999999999999999999999
Q ss_pred eecceEEeCCCchhHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhcccC-CCCcEEEEEEeCC----eEEcCHHHHHHH
Q 026496 161 WQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKV-TPNNVDIARVAPT----YHLYTPSEVEAV 233 (237)
Q Consensus 161 ~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~~~-~~~~iei~ii~~~----~~~~~~~ei~~~ 233 (237)
+.++++|+|.|.+.+++.||++..++|+.+|+++.+.+.+..+-+..- +...+|+.++..+ .+.++. |+.+.
T Consensus 158 ~~Y~~aaiGKgrq~aKtElEKL~~~~mt~~e~VkeaakIiY~~HDe~KdK~feiEm~wvg~eTnG~h~~vp~-el~~e 234 (254)
T KOG0184|consen 158 YGYKGAAIGKGRQAAKTELEKLKIDEMTCKELVKEAAKIIYKVHDENKDKEFEIEMGWVGEETNGLHEKVPS-ELLEE 234 (254)
T ss_pred cceeeeeccchhHHHHHHHHhcccccccHHHHHHHHHheeEeecccccCcceEEEEEEEEeecCCccccCcH-HHHHH
Confidence 999999999999999999999999999999999999999999887654 5678999999977 555554 55443
No 13
>cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.5e-56 Score=367.69 Aligned_cols=211 Identities=82% Similarity=1.231 Sum_probs=200.5
Q ss_pred CCCCCceeCCCCcccchhhHHHHHhcCCcEEEEEeCCEEEEEEeccCCCCCccCCcccceEEEcCcEEEEEecchhhHHH
Q 026496 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADART 87 (237)
Q Consensus 8 yd~~~~~fsp~G~~~qveya~~~~~~G~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~ 87 (237)
||+++|+||||||++|||||++++++|+|+|||+++||||||+|++.++++...++.+||++|+++++++++|+.+|++.
T Consensus 1 ~~~~~~~f~p~G~~~Q~eya~~a~~~G~t~igik~~dgVvlaad~r~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~ 80 (213)
T cd03753 1 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIKTKEGVVLAVEKRITSPLMEPSSVEKIMEIDDHIGCAMSGLIADART 80 (213)
T ss_pred CCCCCccCCCCCeEhHHHHHHHHHhcCCCEEEEEeCCEEEEEEecccCCcCcCCCccceEEEEcCCEEEEEecCHHHHHH
Confidence 89999999999999999999999999999999999999999999999887777788899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCC--cCCCCCcceeeEEEEEcCCCCeEEEECCCCceeecce
Q 026496 88 LVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDE--ESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNA 165 (237)
Q Consensus 88 l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~--~~~~rP~~~~~iv~G~d~~g~~ly~vd~~G~~~~~~~ 165 (237)
+.+.++.+++.|+++++++++++.+++.|++.+++|+++.. .+..|||++++||+|+|++||+||.+||+|++.++++
T Consensus 81 l~~~~r~~~~~~~~~~~~~i~~~~~~~~ls~~~~~~~~~~~~~~~~~rP~~v~~ii~G~D~~gp~Ly~vd~~G~~~~~~~ 160 (213)
T cd03753 81 LIDHARVEAQNHRFTYNEPMTVESVTQAVSDLALQFGEGDDGKKAMSRPFGVALLIAGVDENGPQLFHTDPSGTFTRCDA 160 (213)
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhCcccccccccccceEEEEEEEEcCCCCEEEEECCCCCeecccE
Confidence 99999999999999999999999999999999999987540 1246999999999999999999999999999999999
Q ss_pred EEeCCCchhHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEE
Q 026496 166 KAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARV 218 (237)
Q Consensus 166 ~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~~~~~~~iei~ii 218 (237)
+++|++++.++++|+++|+++|+++||++++++||+.+.++++++.++||+++
T Consensus 161 ~a~G~~~~~~~~~L~~~~~~~ls~eeai~l~~~~l~~~~~~~~~~~~~ei~~~ 213 (213)
T cd03753 161 KAIGSGSEGAQSSLQEKYHKDMTLEEAEKLALSILKQVMEEKLNSTNVELATV 213 (213)
T ss_pred EEECCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEC
Confidence 99999999999999999999999999999999999999888888899999875
No 14
>cd01911 proteasome_alpha proteasome alpha subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each.
Probab=100.00 E-value=4.5e-56 Score=363.98 Aligned_cols=208 Identities=61% Similarity=0.955 Sum_probs=201.0
Q ss_pred CCCCCceeCCCCcccchhhHHHHHhcCCcEEEEEeCCEEEEEEeccCCCCCccCCcccceEEEcCcEEEEEecchhhHHH
Q 026496 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADART 87 (237)
Q Consensus 8 yd~~~~~fsp~G~~~qveya~~~~~~G~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~ 87 (237)
||.++|+||||||++|+|||++++++|+|+||++++||||+|+|++.+.++...++.+||++|+++++++++|..+|++.
T Consensus 1 ~~~~~~~f~~~G~~~q~eya~~~~~~G~tvigi~~~dgVvlaaD~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~ 80 (209)
T cd01911 1 YDRSITTFSPEGRLFQVEYALEAVKNGSTAVGIKGKDGVVLAVEKKVTSKLLDPSSVEKIFKIDDHIGCAVAGLTADARV 80 (209)
T ss_pred CCCCCccCCCCCEEeHHHHHHHHHHcCCCEEEEEECCEEEEEEEecCCccccCCcccceEEEecCCeEEEeccCcHhHHH
Confidence 89999999999999999999999999999999999999999999999887766788899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCcCCCCCcceeeEEEEEcCC-CCeEEEECCCCceeecceE
Q 026496 88 LVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDEN-GPSLYYTDPSGTFWQCNAK 166 (237)
Q Consensus 88 l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~~~~iv~G~d~~-g~~ly~vd~~G~~~~~~~~ 166 (237)
+.+.++.++..|++.++++++++.+++++++.+|.|+++. +.|||++++||+|+|++ ||+||.+||.|++.+++++
T Consensus 81 l~~~l~~~~~~~~~~~g~~~~~~~la~~ls~~~~~~~~~~---~~rP~~v~~iv~G~d~~~~~~Ly~iD~~G~~~~~~~~ 157 (209)
T cd01911 81 LVNRARVEAQNYRYTYGEPIPVEVLVKRIADLAQVYTQYG---GVRPFGVSLLIAGYDEEGGPQLYQTDPSGTYFGYKAT 157 (209)
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccc---CccChhheEEEEEEcCCCCcEEEEECCCCCeeeeeEE
Confidence 9999999999999999999999999999999999999998 99999999999999976 8999999999999999999
Q ss_pred EeCCCchhHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEE
Q 026496 167 AIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARV 218 (237)
Q Consensus 167 a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~~~~~~~iei~ii 218 (237)
++|+|+..++++||+.|+++|+.+||++++.+||..+.++++++.+++|+++
T Consensus 158 a~G~g~~~~~~~L~~~~~~~ms~~ea~~l~~~~l~~~~~~d~~~~~~~i~i~ 209 (209)
T cd01911 158 AIGKGSQEAKTFLEKRYKKDLTLEEAIKLALKALKEVLEEDKKAKNIEIAVV 209 (209)
T ss_pred EeCCCcHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHhccCCCCcEEEEEC
Confidence 9999999999999999999999999999999999999999887778999875
No 15
>COG0638 PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-55 Score=365.47 Aligned_cols=226 Identities=46% Similarity=0.780 Sum_probs=214.4
Q ss_pred CCCCCCCceeCCCCcccchhhHHHHHhcC-CcEEEEEeCCEEEEEEeccCCCCC-ccCCcccceEEEcCcEEEEEecchh
Q 026496 6 TEYDRGVNTFSPEGRLFQVEYAIEAIKLG-STAIGLKTKEGVVLAVEKRITSPL-LEPSSVEKIMEIDEHIGCAMSGLIA 83 (237)
Q Consensus 6 ~~yd~~~~~fsp~G~~~qveya~~~~~~G-~t~vgi~~~dgVvla~d~~~~~~~-~~~~~~~ki~~i~~~i~~~~sG~~~ 83 (237)
.+||..+++|||+|+++|+|||.+++.+| +|+|||+++||||||+|+|.++++ ...++.+||++|+|||+|+++|+.+
T Consensus 1 ~~~~~~~~~fsp~g~l~q~e~a~~a~~~~gtT~vgik~~dgVVlaadkr~t~~~~~~~~~~~Ki~~I~d~i~~~~sG~~a 80 (236)
T COG0638 1 AGYDRAITIFSPEGRLFQVEYALEAVKRGGTTTVGIKGKDGVVLAADKRATSGLLIASSNVEKIFKIDDHIGMAIAGLAA 80 (236)
T ss_pred CCCcCcceeECCCCchHHHHHHHHHHHcCCceEEEEEecCEEEEEEeccCCCCceecccccceEEEecCCEEEEeccCcH
Confidence 36999999999999999999999999886 999999999999999999999965 5566799999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCcCCCCCcceeeEEEEEcCCCCeEEEECCCCceeec
Q 026496 84 DARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQC 163 (237)
Q Consensus 84 D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~~~~iv~G~d~~g~~ly~vd~~G~~~~~ 163 (237)
|++.|+++++.+++.|++.++++++++.+++.+++.+|.|+++ +|||++++|+||+|+++|+||++||+|++.++
T Consensus 81 Da~~lv~~~r~~a~~~~~~~~~~i~v~~la~~ls~~l~~~~~~-----~rP~gv~~iiaG~d~~~p~Ly~~Dp~G~~~~~ 155 (236)
T COG0638 81 DAQVLVRYARAEAQLYRLRYGEPISVEALAKLLSNILQEYTQS-----GRPYGVSLLVAGVDDGGPRLYSTDPSGSYNEY 155 (236)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccC-----cccceEEEEEEEEcCCCCeEEEECCCCceeec
Confidence 9999999999999999999999999999999999999999874 49999999999999988999999999999999
Q ss_pred ceEEeCCCchhHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhcccC-CCCcEEEEEEeCC--eEEcCHHHHHHHHHh
Q 026496 164 NAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKV-TPNNVDIARVAPT--YHLYTPSEVEAVINR 236 (237)
Q Consensus 164 ~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~~~-~~~~iei~ii~~~--~~~~~~~ei~~~~~~ 236 (237)
+++|+|+|++.++++||+.|+++|++|||++++.+||..+.+||. ++++++|++++++ ++.++++++..++.+
T Consensus 156 ~~~a~Gsgs~~a~~~Le~~y~~~m~~eeai~la~~al~~a~~rd~~s~~~~~v~vi~~~~~~~~~~~~~~~~~~~~ 231 (236)
T COG0638 156 KATAIGSGSQFAYGFLEKEYREDLSLEEAIELAVKALRAAIERDAASGGGIEVAVITKDEGFRKLDGEEIKKLLDD 231 (236)
T ss_pred CEEEEcCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccccCCCCeEEEEEEcCCCeEEcCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999987 7888999999994 999999999988764
No 16
>KOG0181 consensus 20S proteasome, regulatory subunit alpha type PSMA2/PRE8 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-56 Score=345.58 Aligned_cols=231 Identities=39% Similarity=0.650 Sum_probs=224.9
Q ss_pred CCCCCCCCCceeCCCCcccchhhHHHHHhcCCcEEEEEeCCEEEEEEeccCCCCCccCCcccceEEEcCcEEEEEecchh
Q 026496 4 TRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIA 83 (237)
Q Consensus 4 ~~~~yd~~~~~fsp~G~~~qveya~~~~~~G~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~ki~~i~~~i~~~~sG~~~ 83 (237)
+-.+|.+++|+|||+|++-|+|||+.|+.+|.+.|||+-.||||||++++..+.+......+|+++|.++|+|.+||..+
T Consensus 2 ~d~~y~fslTtFSpsGKL~QieyAL~Av~~G~~SvGi~A~nGvVlatekk~~s~L~~~~sv~KV~~i~~~IG~vYSGmgp 81 (233)
T KOG0181|consen 2 GDFGYSFSLTTFSPSGKLVQIEYALTAVVNGQTSVGIKAANGVVLATEKKDVSPLVDEESVRKVEKITPHIGCVYSGMGP 81 (233)
T ss_pred CCcccceeeEEEcCCCceehHHHHHHHHhCCCCceeeeecCceEEEeccCCCCccchhhhhhhHhhccCCcceEEecCCC
Confidence 44579999999999999999999999999999999999999999999999888998888999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCcCCCCCcceeeEEEEEcCCCCeEEEECCCCceeec
Q 026496 84 DARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQC 163 (237)
Q Consensus 84 D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~~~~iv~G~d~~g~~ly~vd~~G~~~~~ 163 (237)
|++.+++..|+.++.|...|++++|+..|+..++..+|+|||.+ |.||||+++++||||+++|.||++||+|+++.|
T Consensus 82 D~RvlV~~~rkiAe~Yy~vY~e~~pt~qlv~~~asvmQEyTqsg---GvrPFGvslliaG~~~~~p~LyQvdPSGsyf~w 158 (233)
T KOG0181|consen 82 DYRVLVHKSRKIAEQYYRVYGEPIPTTQLVQEVASVMQEYTQSG---GVRPFGVSLLIAGWDEGGPLLYQVDPSGSYFAW 158 (233)
T ss_pred ceeehhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcC---CccccceEEEEeecCCCceeEEEECCccceeeh
Confidence 99999999999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred ceEEeCCCchhHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEEeCC-eEEcCHHHHHHHHHhC
Q 026496 164 NAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPT-YHLYTPSEVEAVINRL 237 (237)
Q Consensus 164 ~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~~~~~~~iei~ii~~~-~~~~~~~ei~~~~~~~ 237 (237)
+++|.|.+...++++||++|++++.+++++..|+..|++..+...+++++||+++..+ |++++++||+++|.++
T Consensus 159 katA~Gkn~v~aktFlEkR~~edleldd~ihtailtlkE~fege~~~~nieigv~~~~~F~~lt~~eI~d~l~~l 233 (233)
T KOG0181|consen 159 KATAMGKNYVNAKTFLEKRYNEDLELDDAIHTAILTLKESFEGEMTAKNIEIGVCGENGFRRLTPAEIEDYLASL 233 (233)
T ss_pred hhhhhccCcchHHHHHHHHhccccccchHHHHHHHHHHHHhccccccCceEEEEecCCceeecCHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999988 9999999999999864
No 17
>KOG0178 consensus 20S proteasome, regulatory subunit alpha type PSMA4/PRE9 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-54 Score=337.22 Aligned_cols=228 Identities=39% Similarity=0.666 Sum_probs=218.0
Q ss_pred CCCCCCCceeCCCCcccchhhHHHHHhcCCcEEEEEeCCEEEEEEeccCCCCCcc-CCcccceEEEcCcEEEEEecchhh
Q 026496 6 TEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLE-PSSVEKIMEIDEHIGCAMSGLIAD 84 (237)
Q Consensus 6 ~~yd~~~~~fsp~G~~~qveya~~~~~~G~t~vgi~~~dgVvla~d~~~~~~~~~-~~~~~ki~~i~~~i~~~~sG~~~D 84 (237)
..||...|+||||||++|||||++++.+.+|+||+..+||||||++++.+++++. +.+.+||++|+|+++|+.+|+.+|
T Consensus 3 r~ydsrttiFspEGRLyQVEyAmeais~aGt~iGila~DGvvLa~e~k~t~kll~t~~~~EKiY~l~d~iaC~vaGlt~D 82 (249)
T KOG0178|consen 3 RRYDSRTTIFSPEGRLYQVEYAMEAISHAGTCIGILASDGVVLAGENKVTSKLLDTSIPMEKIYKLNDNIACAVAGLTSD 82 (249)
T ss_pred cCcCCcccccCCCcchHHHHHHHHHHhhhcceeEEEecCceEEEeecccchhhhhccccHHHhhhcCCceEEEEeccccc
Confidence 4599999999999999999999999999999999999999999999999998875 567899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCcCCCCCcceeeEEEEEcCC-CCeEEEECCCCceeec
Q 026496 85 ARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDEN-GPSLYYTDPSGTFWQC 163 (237)
Q Consensus 85 ~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~~~~iv~G~d~~-g~~ly~vd~~G~~~~~ 163 (237)
+..|++++|..++.|.++|+++||.+.|++.|++..|.|||+. |.|||||++|.+|||+. |.+||+-||+|++..|
T Consensus 83 AnvL~n~aRi~AQ~yl~~y~e~iP~eqLv~~lcdiKQayTQyg---G~RPFGVSfLYaGwd~~~gyqLy~SdPSGny~gW 159 (249)
T KOG0178|consen 83 ANVLKNYARIIAQRYLFRYGEEIPCEQLVTFLCDIKQAYTQYG---GKRPFGVSFLYAGWDDRYGYQLYQSDPSGNYGGW 159 (249)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHhhcc---CcCCCceeeeeeceecCcceEEEecCCCCCcccc
Confidence 9999999999999999999999999999999999999999999 99999999999999986 8999999999999999
Q ss_pred ceEEeCCCchhHHHHHHhhcCCCCC-HHHHHHHHHHHHHHHhccc-CCCCcEEEEEEeCC-----eEEcCHHHHHHHHHh
Q 026496 164 NAKAIGSGSEGADSSLQEQYNKDLT-LQEAETIALSILKQVMEEK-VTPNNVDIARVAPT-----YHLYTPSEVEAVINR 236 (237)
Q Consensus 164 ~~~a~G~g~~~~~~~Le~~~~~~~s-~~ea~~l~~~~l~~~~~~~-~~~~~iei~ii~~~-----~~~~~~~ei~~~~~~ 236 (237)
++.++|.++..+++.|++-++++.. +++|+++|++.|....+.. ++...+|++.++++ ++.++++||.++|++
T Consensus 160 ka~ciG~N~~Aa~s~Lkqdykdd~~~~~eA~~laikvL~kt~d~~~lt~eklEia~~~k~~~k~v~~i~~~~ev~kll~k 239 (249)
T KOG0178|consen 160 KATCIGANSGAAQSMLKQDYKDDENDLEEAKALAIKVLSKTLDSGSLTAEKLEIATITKDCNKTVLKILKKDEVLKLLEK 239 (249)
T ss_pred ceeeeccchHHHHHHHHhhhccccccHHHHHHHHHHHHHhhcccCCCChhheEEEEEEecCCceEEEecCHHHHHHHHHH
Confidence 9999999999999999999998764 9999999999999999886 57889999999987 889999999999986
No 18
>KOG0183 consensus 20S proteasome, regulatory subunit alpha type PSMA7/PRE6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.1e-55 Score=340.69 Aligned_cols=226 Identities=39% Similarity=0.666 Sum_probs=216.0
Q ss_pred CCCCCCCceeCCCCcccchhhHHHHHhcCCcEEEEEeCCEEEEEEeccCCCCCccCCcccceEEEcCcEEEEEecchhhH
Q 026496 6 TEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADA 85 (237)
Q Consensus 6 ~~yd~~~~~fsp~G~~~qveya~~~~~~G~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~ki~~i~~~i~~~~sG~~~D~ 85 (237)
+.||+.+|+|||||+|+|||||++|+.+|+|.||++++|+|||+.+++-...+...+...||..+++|++++++|+.+|+
T Consensus 2 srydraltvFSPDGhL~QVEYAqEAvrkGstaVgvrg~~~vvlgvEkkSv~~Lq~~r~~rkI~~ld~hV~mafaGl~aDA 81 (249)
T KOG0183|consen 2 SRYDRALTVFSPDGHLFQVEYAQEAVRKGSTAVGVRGNNCVVLGVEKKSVPKLQDERTVRKISMLDDHVVMAFAGLTADA 81 (249)
T ss_pred CccccceEEECCCCCEEeeHhHHHHHhcCceEEEeccCceEEEEEeecchhhhhhhhhhhhheeecceeeEEecCCCccc
Confidence 56999999999999999999999999999999999999999999999977788888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCcCCCCCcceeeEEEEEcCCC-CeEEEECCCCceeecc
Q 026496 86 RTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENG-PSLYYTDPSGTFWQCN 164 (237)
Q Consensus 86 ~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~~~~iv~G~d~~g-~~ly~vd~~G~~~~~~ 164 (237)
+.|++.+|-+|+.|++..+.|++++.++++|+.+.|+||+.. |.||||++++++|+|++| |.||++||+|.+.+|+
T Consensus 82 rilinrArvecqShrlt~edpvtveyitRyiA~~kQrYTqs~---grRPFGvs~Li~GfD~~g~p~lyqtePsG~f~ewk 158 (249)
T KOG0183|consen 82 RILINRARVECQSHRLTLEDPVTVEYITRYIAGLKQRYTQSN---GRRPFGVSTLIGGFDPDGTPRLYQTEPSGIFSEWK 158 (249)
T ss_pred eeehhhHhHhhhhhhcccCCCcHHHHHHHHHHHhhhhhhccC---CcccccceEEEEeeCCCCCeeeEeeCCCcchhhhh
Confidence 999999999999999999999999999999999999999999 999999999999999876 9999999999999999
Q ss_pred eEEeCCCchhHHHHHHhhcCCC--CCHHHHHHHHHHHHHHHhcccCCCCcEEEEEEeCC--eEEcCHHHHHHHHHh
Q 026496 165 AKAIGSGSEGADSSLQEQYNKD--LTLQEAETIALSILKQVMEEKVTPNNVDIARVAPT--YHLYTPSEVEAVINR 236 (237)
Q Consensus 165 ~~a~G~g~~~~~~~Le~~~~~~--~s~~ea~~l~~~~l~~~~~~~~~~~~iei~ii~~~--~~~~~~~ei~~~~~~ 236 (237)
+.|+|.+++.++.+||+.|.+. .+..++++++.++|.++... .+.++|++++++. +++++.++|+.++..
T Consensus 159 a~aiGr~sk~VrEflEK~y~e~~~~~~~~~ikL~ir~LleVvqs--~~~nie~aVm~~~~~~~~l~~~~I~~~v~~ 232 (249)
T KOG0183|consen 159 ANAIGRSSKTVREFLEKNYKEEAIATEGETIKLAIRALLEVVQS--GGKNIEVAVMKRRKDLKMLESEEIDDIVKE 232 (249)
T ss_pred ccccccccHHHHHHHHHhcccccccccccHHHHHHHHHHHHhhc--CCCeeEEEEEecCCceeecCHHHHHHHHHH
Confidence 9999999999999999999876 78899999999999998764 6678999999988 999999999999865
No 19
>KOG0863 consensus 20S proteasome, regulatory subunit alpha type PSMA1/PRE5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.4e-53 Score=332.33 Aligned_cols=227 Identities=40% Similarity=0.632 Sum_probs=216.2
Q ss_pred CCCCCCCCCceeCCCCcccchhhHHHHHhcCCcEEEEEeCCEEEEEEeccCCCCCccCCcccceEEEcCcEEEEEecchh
Q 026496 4 TRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIA 83 (237)
Q Consensus 4 ~~~~yd~~~~~fsp~G~~~qveya~~~~~~G~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~ki~~i~~~i~~~~sG~~~ 83 (237)
-|+.||.++|+|||+||++|||||++|++.|++.||+|.++..||++-++..+.+ ++.++||++|++|+++.++|+++
T Consensus 2 frnqyd~d~t~wsPqGrl~QvEya~EavkqGsatVGLks~thaVLvAl~r~~seL--ss~QkKi~~iD~h~g~siAGLt~ 79 (264)
T KOG0863|consen 2 FRNQYDNDVTTWSPQGRLHQVEYAMEAVKQGSATVGLKSRTHAVLVALKRAQSEL--SSHQKKIFKIDDHIGISIAGLTA 79 (264)
T ss_pred CcccccCceeEECCcceehHHHHHHHHHhcccceEeecccceEEEeeeccchhHH--HHhhheeEecccccceEEeccCc
Confidence 4788999999999999999999999999999999999999999999999887766 56779999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCcCCCCCcceeeEEEEEcCCCCeEEEECCCCceeec
Q 026496 84 DARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQC 163 (237)
Q Consensus 84 D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~~~~iv~G~d~~g~~ly~vd~~G~~~~~ 163 (237)
|++.|.++++.+|..+++.+++++|+..|...|.+.+|..|++. +.|||||.++++|||+.||+||+++|+|++.++
T Consensus 80 Darvl~~Ylr~ec~~~~~~~~r~~pv~rl~~~l~~k~q~~Tq~y---grRpYGVGllv~gYDe~G~hl~e~~Psg~v~e~ 156 (264)
T KOG0863|consen 80 DARVLSRYLRQECLNSRFIYGRPLPVLRLVEDLGDKAQENTQRY---GRRPYGVGLLVAGYDESGPHLYEFCPSGNVFEC 156 (264)
T ss_pred chHHHHHHHHHHHhhhhhccCCcccHHHHHHHHHHHHhhhhhhh---CCccccceEEEEeecCCCceeEEEcCCccEEEE
Confidence 99999999999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred ceEEeCCCchhHHHHHHhhcC--CCCCHHHHHHHHHHHHHHHhc--ccCCCCcEEEEEEeCC--eEEcCHHHHHHHHH
Q 026496 164 NAKAIGSGSEGADSSLQEQYN--KDLTLQEAETIALSILKQVME--EKVTPNNVDIARVAPT--YHLYTPSEVEAVIN 235 (237)
Q Consensus 164 ~~~a~G~g~~~~~~~Le~~~~--~~~s~~ea~~l~~~~l~~~~~--~~~~~~~iei~ii~~~--~~~~~~~ei~~~~~ 235 (237)
++.++|+.++.++++||++.. ++++.||.+..++.||+.+.. .++++.+++|+|+.++ |..++.+++.+++.
T Consensus 157 ~g~sIGsRSQsARTyLEr~~e~f~~~~~eELI~~gi~Alr~tlp~de~lt~~nvsI~Ivgkd~pf~~~d~~~~~k~~~ 234 (264)
T KOG0863|consen 157 KGMSIGSRSQSARTYLERNLEEFEDSSPEELIKHGIMALRETLPEDEDLTGENVSIAIVGKDEPFTILDQKDVAKYVD 234 (264)
T ss_pred eeeecccchhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcCcccccccceeEEEEEeCCCceEeecHHHHHHHHH
Confidence 999999999999999999975 489999999999999999874 3578899999999999 99999999998875
No 20
>KOG0182 consensus 20S proteasome, regulatory subunit alpha type PSMA6/SCL1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-51 Score=322.11 Aligned_cols=231 Identities=33% Similarity=0.637 Sum_probs=222.7
Q ss_pred CCCCCCCCCceeCCCCcccchhhHHHHHhc-CCcEEEEEeCCEEEEEEeccCCCCCccCCcccceEEEcCcEEEEEecch
Q 026496 4 TRTEYDRGVNTFSPEGRLFQVEYAIEAIKL-GSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLI 82 (237)
Q Consensus 4 ~~~~yd~~~~~fsp~G~~~qveya~~~~~~-G~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~ki~~i~~~i~~~~sG~~ 82 (237)
...+||+.+|+|||||||+|||||+||+++ |-|+||+++||++|+++.++.+.+++.++....+|+|..+|+|+++|..
T Consensus 5 s~agfDrhitIFspeGrLyQVEYafkAin~~gltsVavrgkDcavvvsqKkvpDKLld~~tvt~~f~itk~ig~v~tG~~ 84 (246)
T KOG0182|consen 5 SSAGFDRHITIFSPEGRLYQVEYAFKAINQAGLTSVAVRGKDCAVVVTQKKVPDKLLDSSTVTHLFRITKKIGCVITGMI 84 (246)
T ss_pred CcCCccceEEEECCCceEEeeehHHHHhhcCCCceEEEcCCceEEEEecccCcccccccccceeEEEeeccceEEEecCC
Confidence 467899999999999999999999999999 7799999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCcCCCCCcceeeEEEEEcCC-CCeEEEECCCCcee
Q 026496 83 ADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDEN-GPSLYYTDPSGTFW 161 (237)
Q Consensus 83 ~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~~~~iv~G~d~~-g~~ly~vd~~G~~~ 161 (237)
+|++..+.++|.++.++++.||.+||++.|++++++.-|.|+|+. .+||+||.+++.|+|++ ||.+|.+||.|-+.
T Consensus 85 aDar~~v~rar~eAa~~~yk~Gyemp~DiL~k~~Ad~~QvytQ~a---~mRplg~~~~~i~~D~E~gP~vYk~DpAGyy~ 161 (246)
T KOG0182|consen 85 ADARSQVQRARYEAAEFRYKYGYEMPCDILAKRMADKSQVYTQNA---AMRPLGVAATLIGVDEERGPSVYKTDPAGYYY 161 (246)
T ss_pred cchHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHhhHHHHHhhhh---hhcccceeEEEEEeccccCcceEeecCccccc
Confidence 999999999999999999999999999999999999999999999 99999999999999975 89999999999999
Q ss_pred ecceEEeCCCchhHHHHHHhhcCCC--CCHHHHHHHHHHHHHHHhcccCCCCcEEEEEEeCC---eEEcCHHHHHHHHHh
Q 026496 162 QCNAKAIGSGSEGADSSLQEQYNKD--LTLQEAETIALSILKQVMEEKVTPNNVDIARVAPT---YHLYTPSEVEAVINR 236 (237)
Q Consensus 162 ~~~~~a~G~g~~~~~~~Le~~~~~~--~s~~ea~~l~~~~l~~~~~~~~~~~~iei~ii~~~---~~~~~~~ei~~~~~~ 236 (237)
.+++++.|-....+..+||++++++ ++.++++++++.||..+..-|.....+||.+++++ |+.|+.+||++.|..
T Consensus 162 g~kAtaaG~Kq~e~tsfLEKk~Kk~~~~t~~e~ve~ai~al~~sl~~Dfk~se~EVgvv~~~~p~f~~Ls~~eie~hL~~ 241 (246)
T KOG0182|consen 162 GFKATAAGVKQQEATSFLEKKYKKDIDLTFEETVETAISALQSSLGIDFKSSELEVGVVTVDNPEFRILSAEEIEEHLQA 241 (246)
T ss_pred cceeeecccchhhHHHHHHHhhccCccchHHHHHHHHHHHHHHHHhcccCCcceEEEEEEcCCcceeeccHHHHHHHHHH
Confidence 9999999999999999999999987 67999999999999999998898999999999988 999999999999876
Q ss_pred C
Q 026496 237 L 237 (237)
Q Consensus 237 ~ 237 (237)
|
T Consensus 242 I 242 (246)
T KOG0182|consen 242 I 242 (246)
T ss_pred h
Confidence 4
No 21
>TIGR03691 20S_bact_alpha proteasome, alpha subunit, bacterial type. Members of this family are the alpha subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In most Actinobacteria (an exception is Propionibacterium acnes), the proteasome is accompanied by a system of tagging proteins for degradation with Pup.
Probab=100.00 E-value=1.6e-45 Score=303.95 Aligned_cols=208 Identities=21% Similarity=0.317 Sum_probs=188.0
Q ss_pred CCCCccc-chhhHHHHHhcCCcEEEEEeCCEEEEEEeccCCCCCccCCcccceEEEcCcEEEEEecchhhHHHHHHHHHH
Q 026496 16 SPEGRLF-QVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARV 94 (237)
Q Consensus 16 sp~G~~~-qveya~~~~~~G~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~ 94 (237)
+|+.-+. .-|||++|+++|+|+|||+++||||||+|++ +++.+||++|+||++|+++|+.+|++.+++.++.
T Consensus 8 ~~~~~~~~~~EYA~kav~~g~T~VGIk~kdgVVLaaek~-------~~~~~KI~~I~d~ig~~~sG~~~D~~~lv~~~r~ 80 (228)
T TIGR03691 8 SPEQIMRDRAELARKGIARGRSVVVLTYADGILFVAENP-------SRSLHKISELYDRIGFAAVGKYNEFENLRRAGIR 80 (228)
T ss_pred CHHHHHhhHHHHHHHHHHcCCcEEEEEeCCeEEEEEecC-------CCCcCcEEEecCCEEEEEcCCHHHHHHHHHHHHH
Confidence 6676666 4799999999999999999999999999997 2457899999999999999999999999999999
Q ss_pred HHHHHHHHhC-CCCCHHHHHHHHHHHHHHhcCCCCcCCCCCcceeeEEEEEcC--CCCeEEEECCCCceeecc-eEEeCC
Q 026496 95 ETQNHRFSYG-EPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDE--NGPSLYYTDPSGTFWQCN-AKAIGS 170 (237)
Q Consensus 95 ~~~~~~~~~~-~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~~~~iv~G~d~--~g~~ly~vd~~G~~~~~~-~~a~G~ 170 (237)
+++.+++.++ .+++++.+++.+++.+..++ ++ +.|||+|++|++|||+ +||+||.+||+|++.+++ ++|+|+
T Consensus 81 ~a~~~~~~~~~~~~~v~~la~~~tq~~~~~~-~~---~~RP~gvs~Li~G~d~~~~gp~Ly~vDpsG~~~~~~~~~aiG~ 156 (228)
T TIGR03691 81 YADMRGYSYDRRDVTGRGLANAYAQTLGTIF-TE---QQKPYEVEICVAEVGETPDQDQLYRITFDGSIVDERGFVVMGG 156 (228)
T ss_pred HHHHHhhhcCCCCccHHHHHHHHHhhccccc-cc---ccCcceEEEEEEEEcCCCCCCEEEEECCCCCceeccceEEECC
Confidence 9999999998 68999999987777776555 44 6899999999999984 689999999999999976 899999
Q ss_pred CchhHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhc--cc-CCCCcEEEEEEeCC-----eEEcCHHHHHHHH
Q 026496 171 GSEGADSSLQEQYNKDLTLQEAETIALSILKQVME--EK-VTPNNVDIARVAPT-----YHLYTPSEVEAVI 234 (237)
Q Consensus 171 g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~--~~-~~~~~iei~ii~~~-----~~~~~~~ei~~~~ 234 (237)
|++.++++||++|+++||++||++++++||..+.+ ++ +++.++||.+++++ |+.++++||+++|
T Consensus 157 gs~~a~~~Lek~y~~~ms~eeai~la~~aL~~~~~~~r~~~~~~~iEv~ii~k~~~~~~f~~l~~~ei~~~l 228 (228)
T TIGR03691 157 TTEPIATALKESYRDGLSLADALGLAVQALRAGGNGEKRELDAASLEVAVLDRSRPRRAFRRITGEALERLL 228 (228)
T ss_pred ChHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhccccccCCccceEEEEEeCCCCccceEECCHHHHHhhC
Confidence 99999999999999999999999999999999954 43 57889999999953 9999999999874
No 22
>TIGR03690 20S_bact_beta proteasome, beta subunit, bacterial type. Members of this family are the beta subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In Streptomyces, maturation during proteasome assembly was shown to remove a 53-amino acid propeptide. Most of the length of the propeptide is not included in this model.
Probab=100.00 E-value=1.3e-45 Score=303.79 Aligned_cols=201 Identities=23% Similarity=0.309 Sum_probs=186.8
Q ss_pred cCCcEEEEEeCCEEEEEEeccCCC-CCccCCcccceEEEcCcEEEEEecchhhHHHHHHHHHHHHHHHHHHhCCCCCHHH
Q 026496 33 LGSTAIGLKTKEGVVLAVEKRITS-PLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVES 111 (237)
Q Consensus 33 ~G~t~vgi~~~dgVvla~d~~~~~-~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~ 111 (237)
+|+|+|||+++||||||+|++.++ +++.+++.+||++|+++++|+++|..+|++.|.++++.+++.|++.++++++++.
T Consensus 1 ~G~T~igi~~kdgVvlaad~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~ 80 (219)
T TIGR03690 1 HGTTIVALTYPGGVLMAGDRRATQGNMIASRDVEKVYPTDEYSAVGIAGTAGLAIELVRLFQVELEHYEKIEGVPLTLDG 80 (219)
T ss_pred CCcEEEEEEECCEEEEEECCccccCcEEEcCCcceEEEcCCcEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 489999999999999999999998 7777889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCcCCCCCcceeeEEEEEcC--CCCeEEEECCCC-ceeecceEEeCCCchhHHHHHHhhcCCCCC
Q 026496 112 TTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDE--NGPSLYYTDPSG-TFWQCNAKAIGSGSEGADSSLQEQYNKDLT 188 (237)
Q Consensus 112 la~~ls~~~~~~~~~~~~~~~rP~~~~~iv~G~d~--~g~~ly~vd~~G-~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s 188 (237)
++++|++++|.++.. .+|||++++||||||+ ++|+||.+||+| ++..++++|+|+|++.++++||++|+++||
T Consensus 81 la~~ls~~~~~~~~~----~~rp~~v~~iiaG~D~~~~~~~Ly~~Dp~G~~~~~~~~~a~G~g~~~a~~~Le~~~~~~ms 156 (219)
T TIGR03690 81 KANRLAAMVRGNLPA----AMQGLAVVPLLAGYDLDAGAGRIFSYDVTGGRYEERGYHAVGSGSVFAKGALKKLYSPDLD 156 (219)
T ss_pred HHHHHHHHHHhhhhh----ccCCceEEEEEEEECCCCCCcEEEEEeCCCCeeecCCeEEEeccHHHHHHHHHhcCCCCcC
Confidence 999999999887743 6899999999999995 479999999999 577789999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccC-CCC--c-----EEEEEEeCC-eEEcCHHHHHHHHHhC
Q 026496 189 LQEAETIALSILKQVMEEKV-TPN--N-----VDIARVAPT-YHLYTPSEVEAVINRL 237 (237)
Q Consensus 189 ~~ea~~l~~~~l~~~~~~~~-~~~--~-----iei~ii~~~-~~~~~~~ei~~~~~~~ 237 (237)
.+||++++.+||..+.+++. +++ . ++|++|+++ ++.++++||+++++++
T Consensus 157 ~eeai~l~~~al~~~~~~d~~s~~~~~~~~~~~ei~ii~~~g~~~l~~~ei~~~~~~~ 214 (219)
T TIGR03690 157 EDDALRVAVEALYDAADDDSATGGPDLVRGIYPTVVVITADGARRVPESELEELARAI 214 (219)
T ss_pred HHHHHHHHHHHHHHHHhcccccCCcccccccccEEEEEccCceEEcCHHHHHHHHHHH
Confidence 99999999999999999986 333 2 399999988 9999999999999764
No 23
>PTZ00488 Proteasome subunit beta type-5; Provisional
Probab=100.00 E-value=1.9e-45 Score=306.93 Aligned_cols=201 Identities=21% Similarity=0.366 Sum_probs=187.7
Q ss_pred HHhcCCcEEEEEeCCEEEEEEeccCCC-CCccCCcccceEEEcCcEEEEEecchhhHHHHHHHHHHHHHHHHHHhCCCCC
Q 026496 30 AIKLGSTAIGLKTKEGVVLAVEKRITS-PLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMT 108 (237)
Q Consensus 30 ~~~~G~t~vgi~~~dgVvla~d~~~~~-~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~ 108 (237)
.+++|+|+|||+++||||||+|++.++ .++.+++.+||++|+++++++++|..+|++.|.++++.+++.|+++++++++
T Consensus 35 ~~~~G~T~IgIk~kdgVvlAaD~r~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~g~~is 114 (247)
T PTZ00488 35 EFAHGTTTLAFKYGGGIIIAVDSKATAGPYIASQSVKKVIEINPTLLGTMAGGAADCSFWERELAMQCRLYELRNGELIS 114 (247)
T ss_pred ccCCCceEEEEEeCCEEEEEEecCcccCCEEEcCCcCceEEcCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 467899999999999999999999987 6677888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCcCCCCCcceeeEEEEEcCCCCeEEEECCCCceeecceEEeCCCchhHHHHHHhhcCCCCC
Q 026496 109 VESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLT 188 (237)
Q Consensus 109 ~~~la~~ls~~~~~~~~~~~~~~~rP~~~~~iv~G~d~~g~~ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s 188 (237)
++.++++|+++++.+ |. .|+.+++|+||||++||+||.+||+|++.+++++|+|+|+..++++||+.|+++||
T Consensus 115 v~~la~~ls~~l~~~--R~-----~~~~v~~iiaG~D~~gp~Ly~vDp~Gs~~~~~~~a~G~gs~~~~~~Le~~~k~dms 187 (247)
T PTZ00488 115 VAAASKILANIVWNY--KG-----MGLSMGTMICGWDKKGPGLFYVDNDGTRLHGNMFSCGSGSTYAYGVLDAGFKWDLN 187 (247)
T ss_pred HHHHHHHHHHHHHhc--CC-----CCeeEEEEEEEEeCCCCEEEEEcCCcceeecCCEEEccCHHHHHHHHHhcCcCCCC
Confidence 999999999999654 21 24556689999999899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccC-CCCcEEEEEEeCC-eEEcCHHHHHHHHHhC
Q 026496 189 LQEAETIALSILKQVMEEKV-TPNNVDIARVAPT-YHLYTPSEVEAVINRL 237 (237)
Q Consensus 189 ~~ea~~l~~~~l~~~~~~~~-~~~~iei~ii~~~-~~~~~~~ei~~~~~~~ 237 (237)
.+||++++++||+.+.+||. ++++++|++|+++ ++.++++||+++++++
T Consensus 188 ~eEai~l~~kal~~~~~Rd~~sg~~~ei~iI~k~g~~~l~~~ei~~~l~~~ 238 (247)
T PTZ00488 188 DEEAQDLGRRAIYHATFRDAYSGGAINLYHMQKDGWKKISADDCFDLHQKY 238 (247)
T ss_pred HHHHHHHHHHHHHHHHHhccccCCCeEEEEEcCCccEECCHHHHHHHHHHH
Confidence 99999999999999999986 7889999999999 9999999999999763
No 24
>cd03760 proteasome_beta_type_4 proteasome beta type-4 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=4e-45 Score=296.60 Aligned_cols=189 Identities=24% Similarity=0.292 Sum_probs=177.2
Q ss_pred cCCcEEEEEeCCEEEEEEeccCCC-CCccCCcccceEEEcCcEEEEEecchhhHHHHHHHHHHHHH-HHHHHhCCCCCHH
Q 026496 33 LGSTAIGLKTKEGVVLAVEKRITS-PLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQ-NHRFSYGEPMTVE 110 (237)
Q Consensus 33 ~G~t~vgi~~~dgVvla~d~~~~~-~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~-~~~~~~~~~i~~~ 110 (237)
.|+|+|||+++||||||+|++.++ .++.+++.+||++|+++++++++|..+|++.+.++++.+++ .+++.++.+++++
T Consensus 1 ~G~T~igi~~kdgVvlaad~r~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~ 80 (197)
T cd03760 1 TGTSVIAIKYKDGVIIAADTLGSYGSLARFKNVERIFKVGDNTLLGASGDYADFQYLKRLLDQLVIDDECLDDGHSLSPK 80 (197)
T ss_pred CCceEEEEEeCCcEEEEEcCcccccceeecCCCCcEEEecCcEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCCCCCCHH
Confidence 489999999999999999999995 77778889999999999999999999999999999999987 5667899999999
Q ss_pred HHHHHHHHHHHHhcCCCCcCCCCCcceeeEEEEEcC-CCCeEEEECCCCceeecceEEeCCCchhHHHHHHhhcCC--CC
Q 026496 111 STTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDE-NGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNK--DL 187 (237)
Q Consensus 111 ~la~~ls~~~~~~~~~~~~~~~rP~~~~~iv~G~d~-~g~~ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~--~~ 187 (237)
.+++++++.+ |++++ +.|||++++|+||||+ +||+||.+||+|++.+++++|+|+|+.+++++||+.|++ +|
T Consensus 81 ~la~~i~~~~--y~~~~---~~rP~~v~~iiaG~D~~~gp~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~m 155 (197)
T cd03760 81 EIHSYLTRVL--YNRRS---KMNPLWNTLVVGGVDNEGEPFLGYVDLLGTAYEDPHVATGFGAYLALPLLREAWEKKPDL 155 (197)
T ss_pred HHHHHHHHHH--HHHhh---cCCCceEEEEEEEEcCCCCEEEEEEcCCccEEECCEeEEccHHHHHHHHHHhhcCCCCCC
Confidence 9999999987 88887 8899999999999996 689999999999999999999999999999999999999 99
Q ss_pred CHHHHHHHHHHHHHHHhcccC-CCCcEEEEEEeCC-eEEcC
Q 026496 188 TLQEAETIALSILKQVMEEKV-TPNNVDIARVAPT-YHLYT 226 (237)
Q Consensus 188 s~~ea~~l~~~~l~~~~~~~~-~~~~iei~ii~~~-~~~~~ 226 (237)
|.+||++++.+||+.+.+|+. ++++++|++|+++ +++..
T Consensus 156 s~eea~~l~~~~l~~~~~rd~~~~~~~~i~ii~~~g~~~~~ 196 (197)
T cd03760 156 TEEEARALIEECMKVLYYRDARSINKYQIAVVTKEGVEIEG 196 (197)
T ss_pred CHHHHHHHHHHHHHHHHHhccccCCceEEEEECCCCEEeCC
Confidence 999999999999999999985 7889999999998 66543
No 25
>cd03758 proteasome_beta_type_2 proteasome beta type-2 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.2e-44 Score=292.77 Aligned_cols=186 Identities=26% Similarity=0.308 Sum_probs=175.6
Q ss_pred CcEEEEEeCCEEEEEEeccCCC-CCccCCcccceEEEcCcEEEEEecchhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 026496 35 STAIGLKTKEGVVLAVEKRITS-PLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTT 113 (237)
Q Consensus 35 ~t~vgi~~~dgVvla~d~~~~~-~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 113 (237)
+|+|||+++||||||+|+|.++ .++.+++.+||++|+++++++++|..+|++.|.++++.++..|++.++++++++.++
T Consensus 2 ~t~igi~~~dgVvlaad~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~~~la 81 (193)
T cd03758 2 ETLIGIKGKDFVILAADTSAARSILVLKDDEDKIYKLSDHKLMACSGEAGDRLQFAEYIQKNIQLYKMRNGYELSPKAAA 81 (193)
T ss_pred ceEEEEEeCCEEEEEEcCccccCcEEEecCcccEEEeCCCeEEEEccchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 6899999999999999999987 557788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCcCCCCCcceeeEEEEEcC-CCCeEEEECCCCceeecceEEeCCCchhHHHHHHhhcCCCCCHHHH
Q 026496 114 QALCDLALRFGEGDEESMSRPFGVSLLIAGSDE-NGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEA 192 (237)
Q Consensus 114 ~~ls~~~~~~~~~~~~~~~rP~~~~~iv~G~d~-~g~~ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea 192 (237)
+++++.+|.|+++ + |||++++|++|||+ .||+||.+||+|++.+++++|+|+|+++++++||+.|+++||.+||
T Consensus 82 ~~l~~~~~~~~~~----~-rP~~~~~li~G~d~~~~p~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~ms~eea 156 (193)
T cd03758 82 NFTRRELAESLRS----R-TPYQVNLLLAGYDKVEGPSLYYIDYLGTLVKVPYAAHGYGAYFCLSILDRYYKPDMTVEEA 156 (193)
T ss_pred HHHHHHHHHHhhc----C-CCeEEEEEEEEEcCCCCcEEEEECCCcceEECCeeEEeecHHHHHHHHHhccCCCCCHHHH
Confidence 9999999888654 4 89999999999996 6899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccC-CCCcEEEEEEeCC-eEEc
Q 026496 193 ETIALSILKQVMEEKV-TPNNVDIARVAPT-YHLY 225 (237)
Q Consensus 193 ~~l~~~~l~~~~~~~~-~~~~iei~ii~~~-~~~~ 225 (237)
++++.+||+.+.+||. ++++++|++|+++ ++.+
T Consensus 157 i~l~~~a~~~~~~rd~~~~~~i~i~ii~~~g~~~~ 191 (193)
T cd03758 157 LELMKKCIKELKKRFIINLPNFTVKVVDKDGIRDL 191 (193)
T ss_pred HHHHHHHHHHHHHhccccCCceEEEEEcCCCeEeC
Confidence 9999999999999886 7889999999998 6653
No 26
>cd03761 proteasome_beta_type_5 proteasome beta type-5 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.5e-44 Score=288.98 Aligned_cols=184 Identities=24% Similarity=0.388 Sum_probs=174.3
Q ss_pred CcEEEEEeCCEEEEEEeccCCC-CCccCCcccceEEEcCcEEEEEecchhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 026496 35 STAIGLKTKEGVVLAVEKRITS-PLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTT 113 (237)
Q Consensus 35 ~t~vgi~~~dgVvla~d~~~~~-~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 113 (237)
+|+|||+++||||||+|++.++ .++.+++.+||++|++|++++++|..+|++.|.++++.+++.|++.++++++++.++
T Consensus 1 tT~igi~~kdgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i~~~~la 80 (188)
T cd03761 1 TTTLAFIFQGGVIVAVDSRATAGSYIASQTVKKVIEINPYLLGTMAGGAADCQYWERVLGRECRLYELRNKERISVAAAS 80 (188)
T ss_pred CcEEEEEECCEEEEEEcCCccCCcEEEcCCcceEEEccCcEEEEeCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 5899999999999999999999 566678899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCcCCCCCcceeeEEEEEcCCCCeEEEECCCCceeecceEEeCCCchhHHHHHHhhcCCCCCHHHHH
Q 026496 114 QALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAE 193 (237)
Q Consensus 114 ~~ls~~~~~~~~~~~~~~~rP~~~~~iv~G~d~~g~~ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~ 193 (237)
+++++++|.+++ +||++++||||||++||+||.+||+|++.+++++++|+|+++++++||++|+++|+.+||+
T Consensus 81 ~~ls~~l~~~~~-------~~~~v~~li~G~D~~g~~L~~~dp~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~ 153 (188)
T cd03761 81 KLLSNMLYQYKG-------MGLSMGTMICGWDKTGPGLYYVDSDGTRLKGDLFSVGSGSTYAYGVLDSGYRYDLSVEEAY 153 (188)
T ss_pred HHHHHHHHhcCC-------CCeEEEEEEEEEeCCCCEEEEEcCCceEEEcCeEEEcccHHHHHHHHHhcCCCCCCHHHHH
Confidence 999999987743 4799999999999989999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccC-CCCcEEEEEEeCC-eEEc
Q 026496 194 TIALSILKQVMEEKV-TPNNVDIARVAPT-YHLY 225 (237)
Q Consensus 194 ~l~~~~l~~~~~~~~-~~~~iei~ii~~~-~~~~ 225 (237)
+++.+||..+.+||. ++++++|++|+++ ++++
T Consensus 154 ~l~~~~l~~~~~rd~~sg~~~~v~ii~~~g~~~~ 187 (188)
T cd03761 154 DLARRAIYHATHRDAYSGGNVNLYHVREDGWRKI 187 (188)
T ss_pred HHHHHHHHHHHHhcccCCCCeEEEEEcCCceEEc
Confidence 999999999999886 7889999999998 6654
No 27
>cd03759 proteasome_beta_type_3 proteasome beta type-3 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.9e-44 Score=291.02 Aligned_cols=182 Identities=16% Similarity=0.213 Sum_probs=171.5
Q ss_pred cCCcEEEEEeCCEEEEEEeccCCCCCcc-CCcccceEEEcCcEEEEEecchhhHHHHHHHHHHHHHHHHHHhCCCCCHHH
Q 026496 33 LGSTAIGLKTKEGVVLAVEKRITSPLLE-PSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVES 111 (237)
Q Consensus 33 ~G~t~vgi~~~dgVvla~d~~~~~~~~~-~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~ 111 (237)
+|+|+|||+++||||||+|++.++++.. +++.+||++|++|++++++|..+|++.+.++++.+++.|++.++.+++++.
T Consensus 2 ~G~t~igik~~dgVvlaad~~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~ 81 (195)
T cd03759 2 NGGAVVAMAGKDCVAIASDLRLGVQQQTVSTDFQKVFRIGDRLYIGLAGLATDVQTLAQKLRFRVNLYRLREEREIKPKT 81 (195)
T ss_pred CCceEEEEEcCCEEEEEEccccccCCEeEecCCCeEEEeCCCEEEEccchHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 6999999999999999999999887755 567899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCcCCCCCcceeeEEEEEcCC-CCeEEEECCCCceeecc-eEEeCCCchhHHHHHHhhcCCCCCH
Q 026496 112 TTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDEN-GPSLYYTDPSGTFWQCN-AKAIGSGSEGADSSLQEQYNKDLTL 189 (237)
Q Consensus 112 la~~ls~~~~~~~~~~~~~~~rP~~~~~iv~G~d~~-g~~ly~vd~~G~~~~~~-~~a~G~g~~~~~~~Le~~~~~~~s~ 189 (237)
++++|++.+ |+++. |||++++||||||++ ||+||.+||+|++.+++ ++|+|+|++.++++||+.|+++|+.
T Consensus 82 la~~l~~~l--y~~r~-----~P~~v~~ii~G~D~~~~p~Ly~~D~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~ 154 (195)
T cd03759 82 FSSLISSLL--YEKRF-----GPYFVEPVVAGLDPDGKPFICTMDLIGCPSIPSDFVVSGTASEQLYGMCESLWRPDMEP 154 (195)
T ss_pred HHHHHHHHH--HHhcC-----CCceEEEEEEEEcCCCCEEEEEEcCCCcccccCCEEEEcccHHHHHHHHHhccCCCCCH
Confidence 999999998 66654 899999999999964 69999999999998887 9999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcccC-CCCcEEEEEEeCC
Q 026496 190 QEAETIALSILKQVMEEKV-TPNNVDIARVAPT 221 (237)
Q Consensus 190 ~ea~~l~~~~l~~~~~~~~-~~~~iei~ii~~~ 221 (237)
+||++++++||+.+.+|+. ++++++|++|+++
T Consensus 155 ~ea~~l~~~~l~~~~~rd~~~~~~~~i~ii~~~ 187 (195)
T cd03759 155 DELFETISQALLSAVDRDALSGWGAVVYIITKD 187 (195)
T ss_pred HHHHHHHHHHHHHHHhhCcccCCceEEEEEcCC
Confidence 9999999999999999986 7889999999988
No 28
>TIGR03634 arc_protsome_B proteasome endopeptidase complex, archaeal, beta subunit. This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=9.2e-44 Score=285.97 Aligned_cols=181 Identities=33% Similarity=0.577 Sum_probs=172.7
Q ss_pred CCcEEEEEeCCEEEEEEeccCCC-CCccCCcccceEEEcCcEEEEEecchhhHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Q 026496 34 GSTAIGLKTKEGVVLAVEKRITS-PLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVEST 112 (237)
Q Consensus 34 G~t~vgi~~~dgVvla~d~~~~~-~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l 112 (237)
|+|+|||+++||||||+|++.+. +++.+++.+||++|+++++++++|..+|++.+.++++.+++.|+..++.+++++.+
T Consensus 1 G~t~igi~~~dgVvla~d~~~~~~~~i~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 80 (185)
T TIGR03634 1 GTTTVGIKCKDGVVLAADKRASMGNFVASKNAKKVFQIDDYIAMTIAGSVGDAQSLVRILKAEAKLYELRRGRPMSVKAL 80 (185)
T ss_pred CCcEEEEEeCCEEEEEEcCcccCCCEEecCCcccEEEcCCCEEEEcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 78999999999999999999986 66778889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCcCCCCCcceeeEEEEEcCCCCeEEEECCCCceeecceEEeCCCchhHHHHHHhhcCCCCCHHHH
Q 026496 113 TQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEA 192 (237)
Q Consensus 113 a~~ls~~~~~~~~~~~~~~~rP~~~~~iv~G~d~~g~~ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea 192 (237)
++++++.+|.+ ++|||++++|+||+|++||+||.+||+|++.+++++++|+++++++++||+.|+++||++||
T Consensus 81 a~~l~~~~~~~-------~~rP~~v~~ivaG~d~~g~~Ly~~d~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea 153 (185)
T TIGR03634 81 ATLLSNILNSN-------RFFPFIVQLLVGGVDEEGPHLYSLDPAGGIIEDDYTATGSGSPVAYGVLEDEYREDMSVEEA 153 (185)
T ss_pred HHHHHHHHHhc-------CCCCeEEEEEEEEEeCCCCEEEEECCCCCeEECCEEEEcCcHHHHHHHHHhcCCCCCCHHHH
Confidence 99999999665 35999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccC-CCCcEEEEEEeCC
Q 026496 193 ETIALSILKQVMEEKV-TPNNVDIARVAPT 221 (237)
Q Consensus 193 ~~l~~~~l~~~~~~~~-~~~~iei~ii~~~ 221 (237)
++++.+||+.+.+++. ++++++|++|+++
T Consensus 154 ~~l~~~~l~~~~~r~~~~~~~~~v~ii~~~ 183 (185)
T TIGR03634 154 KKLAVRAIKSAIERDVASGNGIDVAVITKD 183 (185)
T ss_pred HHHHHHHHHHHHHhcccCCCCEEEEEEcCC
Confidence 9999999999999986 6788999999976
No 29
>cd03764 proteasome_beta_archeal Archeal proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=4.3e-43 Score=282.75 Aligned_cols=184 Identities=32% Similarity=0.557 Sum_probs=175.0
Q ss_pred CcEEEEEeCCEEEEEEeccCCC-CCccCCcccceEEEcCcEEEEEecchhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 026496 35 STAIGLKTKEGVVLAVEKRITS-PLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTT 113 (237)
Q Consensus 35 ~t~vgi~~~dgVvla~d~~~~~-~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 113 (237)
+|+|||+++||||||+|++.++ .++.+++.+||++|+++++++++|..+|++.|.+.++.+++.|++.++++++++.++
T Consensus 1 tt~iai~~~dgvvia~d~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (188)
T cd03764 1 TTTVGIVCKDGVVLAADKRASMGNFIASKNVKKIFQIDDKIAMTIAGSVGDAQSLVRILKAEARLYELRRGRPMSIKALA 80 (188)
T ss_pred CcEEEEEeCCEEEEEEccccccCCEEecCCcccEEEccCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 6899999999999999999998 667788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCcCCCCCcceeeEEEEEcCCCCeEEEECCCCceeecceEEeCCCchhHHHHHHhhcCCCCCHHHHH
Q 026496 114 QALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAE 193 (237)
Q Consensus 114 ~~ls~~~~~~~~~~~~~~~rP~~~~~iv~G~d~~g~~ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~ 193 (237)
+.+++.++.+ +.|||++++|+||+|+++|+||.+||+|++.+++++|+|+|+++++++||+.|+++|+++||+
T Consensus 81 ~~i~~~~~~~-------~~~P~~~~~lvaG~d~~~~~ly~~D~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~~~~ea~ 153 (188)
T cd03764 81 TLLSNILNSS-------KYFPYIVQLLIGGVDEEGPHLYSLDPLGSIIEDKYTATGSGSPYAYGVLEDEYKEDMTVEEAK 153 (188)
T ss_pred HHHHHHHHhc-------CCCCcEEEEEEEEEeCCCCEEEEECCCCCEEEcCEEEEcCcHHHHHHHHHhcCCCCCCHHHHH
Confidence 9999999664 359999999999999988999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccC-CCCcEEEEEEeCC-eEEc
Q 026496 194 TIALSILKQVMEEKV-TPNNVDIARVAPT-YHLY 225 (237)
Q Consensus 194 ~l~~~~l~~~~~~~~-~~~~iei~ii~~~-~~~~ 225 (237)
+++++||+.+.+++. ++++++|++|+++ ++++
T Consensus 154 ~l~~~~l~~~~~rd~~~~~~i~i~iv~~~g~~~~ 187 (188)
T cd03764 154 KLAIRAIKSAIERDSASGDGIDVVVITKDGYKEL 187 (188)
T ss_pred HHHHHHHHHHHhhcCCCCCcEEEEEECCCCeEeC
Confidence 999999999999986 7889999999998 8776
No 30
>cd03757 proteasome_beta_type_1 proteasome beta type-1 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.4e-43 Score=289.09 Aligned_cols=184 Identities=22% Similarity=0.316 Sum_probs=172.9
Q ss_pred HhcCCcEEEEEeCCEEEEEEeccCCCCC-ccCCcccceEEEcCcEEEEEecchhhHHHHHHHHHHHHHHHHHHhCCCCCH
Q 026496 31 IKLGSTAIGLKTKEGVVLAVEKRITSPL-LEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTV 109 (237)
Q Consensus 31 ~~~G~t~vgi~~~dgVvla~d~~~~~~~-~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~ 109 (237)
+++|+|+|||+++||||||+|++.++++ ..+++.+||++|+++++++++|..+|++.+.+.++.+++.|++.+++++++
T Consensus 5 ~~~G~Tvigik~~dgVvlaaD~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~i~~ 84 (212)
T cd03757 5 TDNGGTVLAIAGNDFAVIAGDTRLSEGYSILSRDSPKIFKLTDKCVLGSSGFQADILALTKRLKARIKMYKYSHNKEMST 84 (212)
T ss_pred cCCCccEEEEEcCCEEEEEECCccccCCEeEeCCCCeEEEcCCCEEEEccchHHHHHHHHHHHHHHHHHHhHHhCCCCCH
Confidence 4789999999999999999999999966 447888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCcCCCCCcceeeEEEEEcCC-CCeEEEECCCCceeecceEEeCCCchhHHHHHHhhcC----
Q 026496 110 ESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDEN-GPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYN---- 184 (237)
Q Consensus 110 ~~la~~ls~~~~~~~~~~~~~~~rP~~~~~iv~G~d~~-g~~ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~---- 184 (237)
+.+++++++.+ |.+|. |||++++||||||++ +|+||.+||+|++.+++++|+|+|+.+++++||+.|+
T Consensus 85 ~~la~~ls~~l--y~~R~-----~P~~~~~iiaG~D~~~~p~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~ 157 (212)
T cd03757 85 EAIAQLLSTIL--YSRRF-----FPYYVFNILAGIDEEGKGVVYSYDPVGSYERETYSAGGSASSLIQPLLDNQVGRKNQ 157 (212)
T ss_pred HHHHHHHHHHH--HhhcC-----CCeEEEEEEEEEcCCCCEEEEEEcCccCeeecCEEEEeecHHHHHHHHHHHHHhhcc
Confidence 99999999999 55543 899999999999964 6999999999999999999999999999999999985
Q ss_pred -----CCCCHHHHHHHHHHHHHHHhcccC-CCCcEEEEEEeCC
Q 026496 185 -----KDLTLQEAETIALSILKQVMEEKV-TPNNVDIARVAPT 221 (237)
Q Consensus 185 -----~~~s~~ea~~l~~~~l~~~~~~~~-~~~~iei~ii~~~ 221 (237)
++||++||++++.+||+.+.+||. ++++++|++|+++
T Consensus 158 ~~~~~~~ms~eea~~l~~~~l~~~~~rd~~sg~~i~i~iit~~ 200 (212)
T cd03757 158 NNVERTPLSLEEAVSLVKDAFTSAAERDIYTGDSLEIVIITKD 200 (212)
T ss_pred CcCCCCCCCHHHHHHHHHHHHHHHHHhCcccCCCEEEEEEcCC
Confidence 899999999999999999999985 7889999999998
No 31
>cd03763 proteasome_beta_type_7 proteasome beta type-7 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.2e-42 Score=280.26 Aligned_cols=185 Identities=27% Similarity=0.423 Sum_probs=173.9
Q ss_pred CcEEEEEeCCEEEEEEeccCCC-CCccCCcccceEEEcCcEEEEEecchhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 026496 35 STAIGLKTKEGVVLAVEKRITS-PLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTT 113 (237)
Q Consensus 35 ~t~vgi~~~dgVvla~d~~~~~-~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 113 (237)
+|+|||+++||||||+|+|.++ .++.+++.+||++|+++++++++|..+|++.|.+.++.+++.|+++++++++++.++
T Consensus 1 tt~igi~~~dgvvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (189)
T cd03763 1 TTIVGVVFKDGVVLGADTRATEGPIVADKNCEKIHYIAPNIYCCGAGTAADTEAVTNMISSNLELHRLNTGRKPRVVTAL 80 (189)
T ss_pred CeEEEEEECCeEEEEEcCCcccCceEEcCCccceEEecCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 5899999999999999999999 456678889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCcCCCCCcceeeEEEEEcCCCCeEEEECCCCceeecceEEeCCCchhHHHHHHhhcCCCCCHHHHH
Q 026496 114 QALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAE 193 (237)
Q Consensus 114 ~~ls~~~~~~~~~~~~~~~rP~~~~~iv~G~d~~g~~ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~ 193 (237)
+++++.++.|. .||++++||||||++||+||.+||.|++.+++++++|+++..++++||++|+++||++||+
T Consensus 81 ~~l~~~l~~~~--------~p~~v~~ivaG~d~~g~~ly~~d~~G~~~~~~~~a~G~~~~~~~~~L~~~~~~~ls~~ea~ 152 (189)
T cd03763 81 TMLKQHLFRYQ--------GHIGAALVLGGVDYTGPHLYSIYPHGSTDKLPFVTMGSGSLAAMSVLEDRYKPDMTEEEAK 152 (189)
T ss_pred HHHHHHHHHcC--------CccceeEEEEeEcCCCCEEEEECCCCCEEecCEEEEcCCHHHHHHHHHhhcCCCCCHHHHH
Confidence 99999996542 4999999999999889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccC-CCCcEEEEEEeCC-eEEcCH
Q 026496 194 TIALSILKQVMEEKV-TPNNVDIARVAPT-YHLYTP 227 (237)
Q Consensus 194 ~l~~~~l~~~~~~~~-~~~~iei~ii~~~-~~~~~~ 227 (237)
+++.+||+.+.+|+. ++++++|++|+++ ++...|
T Consensus 153 ~l~~~~l~~~~~rd~~~~~~~~v~ii~~~g~~~~~~ 188 (189)
T cd03763 153 KLVCEAIEAGIFNDLGSGSNVDLCVITKDGVEYLRN 188 (189)
T ss_pred HHHHHHHHHHHHhcCcCCCceEEEEEcCCcEEEecC
Confidence 999999999999996 6888999999999 776544
No 32
>cd03765 proteasome_beta_bacterial Bacterial proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.6e-42 Score=284.37 Aligned_cols=183 Identities=16% Similarity=0.237 Sum_probs=167.7
Q ss_pred CcEEEEEeCCEEEEEEeccCCCCCccCCcccceEEEc----CcEEEEEecchhhHHHHHHHHHHHHHHHHHHhCC-CCCH
Q 026496 35 STAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEID----EHIGCAMSGLIADARTLVEHARVETQNHRFSYGE-PMTV 109 (237)
Q Consensus 35 ~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~ki~~i~----~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~-~i~~ 109 (237)
|-+|||+++||||||+|+|.++++...++.+||++|+ +|++|+.||..+|++.|.+++|.+++.|+++++. ++++
T Consensus 1 ~~~vGIk~kdGVVLaadkr~~~~l~~~~~~~KI~~I~~~~d~~I~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~v 80 (236)
T cd03765 1 TYCLGIKLDAGLVFASDSRTNAGVDNISTYRKMFVFSVPGERVIVLLTAGNLATTQAVISLLQRDLEDPEETNLLNAPTM 80 (236)
T ss_pred CeEEEEEeCCeEEEEEccCccCCCccccccceEEEecCCCCCEEEEEcCCcHHHHHHHHHHHHHHHHhhHHhhCCCCCCH
Confidence 4589999999999999999988876656789999998 8999999999999999999999999999999999 8999
Q ss_pred HHHHHHHHHHHHH-hcCCCCcCC-----CCCcceeeEEEEEc-CCCCeEEEECCCCceeec----ceEEeCCCchhHHHH
Q 026496 110 ESTTQALCDLALR-FGEGDEESM-----SRPFGVSLLIAGSD-ENGPSLYYTDPSGTFWQC----NAKAIGSGSEGADSS 178 (237)
Q Consensus 110 ~~la~~ls~~~~~-~~~~~~~~~-----~rP~~~~~iv~G~d-~~g~~ly~vd~~G~~~~~----~~~a~G~g~~~~~~~ 178 (237)
+.+|+.+++.+++ +++.. + .|||+|++||+||| ++||+||++||+|++.++ +++|+|. ++.++++
T Consensus 81 ~~la~~i~~~l~~~~~q~~---~~~~~~~rp~gvslIigG~D~~~Gp~LY~idpsG~~~e~~a~~~~~AiG~-~~~a~~~ 156 (236)
T cd03765 81 FDAARYVGETLREVQEQDR---EALKKAGIDFSASFILGGQIKGEEPRLFLIYPQGNFIEATPDTPFLQIGE-TKYGKPI 156 (236)
T ss_pred HHHHHHHHHHHHHHHhhcc---cccccCCcceEEEEEEEeEECCCCCEEEEECCCCCEEeecCCCceeeeCC-chhhHHH
Confidence 9999999998655 44443 3 48999999999999 568999999999999998 5689996 7999999
Q ss_pred HHhhcCCCCCHHHHHHHHHHHHHHHhcccC-CCCcEEEEEEeCC
Q 026496 179 LQEQYNKDLTLQEAETIALSILKQVMEEKV-TPNNVDIARVAPT 221 (237)
Q Consensus 179 Le~~~~~~~s~~ea~~l~~~~l~~~~~~~~-~~~~iei~ii~~~ 221 (237)
||++|+++||++||++++++||..+.++|. ++++|+|++|+++
T Consensus 157 Lek~yk~~ms~eeai~la~~al~~a~~rd~~sg~~iev~vI~k~ 200 (236)
T cd03765 157 LDRVITPDTSLEDAAKCALVSMDSTMRSNLSVGPPLDLLVYERD 200 (236)
T ss_pred HHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEECC
Confidence 999999999999999999999999999986 7888999999998
No 33
>cd03762 proteasome_beta_type_6 proteasome beta type-6 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=6.4e-42 Score=275.93 Aligned_cols=181 Identities=22% Similarity=0.354 Sum_probs=170.7
Q ss_pred CcEEEEEeCCEEEEEEeccCCC-CCccCCcccceEEEcCcEEEEEecchhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 026496 35 STAIGLKTKEGVVLAVEKRITS-PLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTT 113 (237)
Q Consensus 35 ~t~vgi~~~dgVvla~d~~~~~-~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 113 (237)
+|+|||+++||||||+|++.++ .++.+++.+||++|+++++++++|..+|++.|.++++.+++.|+.+++++++++.++
T Consensus 1 ~t~igi~~~dgVvla~D~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~~a 80 (188)
T cd03762 1 TTIIAVEYDGGVVLGADSRTSTGSYVANRVTDKLTQLHDRIYCCRSGSAADTQAIADYVRYYLDMHSIELGEPPLVKTAA 80 (188)
T ss_pred CeEEEEEECCeEEEEEcccccCCceEEcCCcccEEEccCCEEEEecccHHHHHHHHHHHHHHHHHhHHhhCCCCCHHHHH
Confidence 5899999999999999999998 566678899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCcCCCCCcceeeEEEEEcC-CCCeEEEECCCCceeecceEEeCCCchhHHHHHHhhcCCCCCHHHH
Q 026496 114 QALCDLALRFGEGDEESMSRPFGVSLLIAGSDE-NGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEA 192 (237)
Q Consensus 114 ~~ls~~~~~~~~~~~~~~~rP~~~~~iv~G~d~-~g~~ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea 192 (237)
+++++.++.++ |||++++||||+|+ +||+||.+||.|++.+++++++|+++.+++++||+.|+++||++||
T Consensus 81 ~~l~~~~~~~~--------~~~~~~~ii~G~d~~~gp~ly~~d~~G~~~~~~~~~~G~g~~~~~~~Le~~~~~~~s~~ea 152 (188)
T cd03762 81 SLFKNLCYNYK--------EMLSAGIIVAGWDEQNGGQVYSIPLGGMLIRQPFAIGGSGSTYIYGYVDANYKPGMTLEEC 152 (188)
T ss_pred HHHHHHHHhcc--------ccceeeEEEEEEcCCCCcEEEEECCCCCEEecCEEEEcccHHHHHHHHHhcCCCCCCHHHH
Confidence 99999986542 68999999999996 6899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccC-CCCcEEEEEEeCC-eE
Q 026496 193 ETIALSILKQVMEEKV-TPNNVDIARVAPT-YH 223 (237)
Q Consensus 193 ~~l~~~~l~~~~~~~~-~~~~iei~ii~~~-~~ 223 (237)
++++++||+.+.+||. ++++++|++|+++ ++
T Consensus 153 ~~l~~~al~~~~~rd~~~~~~~~i~~i~~~g~~ 185 (188)
T cd03762 153 IKFVKNALSLAMSRDGSSGGVIRLVIITKDGVE 185 (188)
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEEECCCCEE
Confidence 9999999999999986 7789999999998 54
No 34
>PF00227 Proteasome: Proteasome subunit; InterPro: IPR001353 ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, clpXP) complex in other eubacteria. Genes homologous to eubacterial HslV (ClpQ) and HslU (ClpY, clpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa []. The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). The prokaryotic ATP-dependent proteasome is coded for by the heat-shock locus VU (HslVU). It consists of HslV, the protease (MEROPS peptidase subfamily T1B), and HslU, IPR004491 from INTERPRO, the ATPase and chaperone belonging to the AAA/Clp/Hsp100 family. The crystal structure of Thermotoga maritima HslV has been determined to 2.1-A resolution. The structure of the dodecameric enzyme is well conserved compared to those from Escherichia coli and Haemophilus influenzae [, ]. This entry contains threonine peptidases and non-peptidase homologs belong to MEROPS peptidase family T1 (proteasome family, clan PB(T)). The family consists of the protease components of the archaeal and bacterial proteasomes and the alpha and beta subunits of the eukaryotic proteasome. ; GO: 0004298 threonine-type endopeptidase activity, 0051603 proteolysis involved in cellular protein catabolic process, 0005839 proteasome core complex; PDB: 3KRD_1 3H6F_M 2FHH_F 3HF9_F 2FHG_D 3HFA_B 3H6I_K 3MI0_A 3MFE_1 3MKA_F ....
Probab=100.00 E-value=5.2e-42 Score=276.56 Aligned_cols=185 Identities=43% Similarity=0.727 Sum_probs=174.1
Q ss_pred HhcCCcEEEEEeCCEEEEEEeccCCC-CCc-cCCcccceEEEcCcEEEEEecchhhHHHHHHHHHHHHHHHHHHhCCCCC
Q 026496 31 IKLGSTAIGLKTKEGVVLAVEKRITS-PLL-EPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMT 108 (237)
Q Consensus 31 ~~~G~t~vgi~~~dgVvla~d~~~~~-~~~-~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~ 108 (237)
+++|+|+|||+++||||||+|++.+. +.+ .++..+||++|+++++++++|..+|++.+.++++.++..|++.++.+++
T Consensus 1 v~~G~t~vgi~~~dgvvla~d~~~~~g~~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~ 80 (190)
T PF00227_consen 1 VNNGTTVVGIKGKDGVVLAADKRISYGSKLRSPNTVDKIFKINDNIIIGFSGLTADFQYLIRRLREEAQEYRFSYGRPIS 80 (190)
T ss_dssp HHTSBEEEEEEESSEEEEEEEEEEEETTEEEESSTSSSEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHSSGTC
T ss_pred CCCCeEEEEEEECCEEEEEEccccccccccccccccceeeeccCcceeeccccccchHHHHhhhcccchhhhhccCcccc
Confidence 57899999999999999999999985 334 3444799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCcCCCCCcceeeEEEEEcCCC-CeEEEECCCCceeec-ceEEeCCCchhHHHHHHhhcCCC
Q 026496 109 VESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENG-PSLYYTDPSGTFWQC-NAKAIGSGSEGADSSLQEQYNKD 186 (237)
Q Consensus 109 ~~~la~~ls~~~~~~~~~~~~~~~rP~~~~~iv~G~d~~g-~~ly~vd~~G~~~~~-~~~a~G~g~~~~~~~Le~~~~~~ 186 (237)
++.+++.+++.++.++.+. +.|||++++|++|+|+++ |+||.+||+|++.++ +++++|+|++.++++|++.|+++
T Consensus 81 ~~~l~~~~~~~~~~~~~~~---~~~p~~~~~li~G~d~~~~~~l~~vd~~G~~~~~~~~~aiG~g~~~~~~~l~~~~~~~ 157 (190)
T PF00227_consen 81 PEYLAKAIASLIQNYTYRS---GRRPYGVSLLIAGYDEDGGPQLYSVDPSGSYIECKRFAAIGSGSQFAQPILEKLYKPD 157 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHT---TTSTTSEEEEEEEEETTTEEEEEEEETTSEEEEBSSEEEESTTHHHHHHHHHHHHTTT
T ss_pred chhhhhhhHHHHhhhcccc---cccCccccceeeeeccccccceeeeccccccccccccccchhcchhhhHHHHhhccCC
Confidence 9999999999999999887 899999999999999776 999999999999999 69999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcccC-CCCcEEEEEE
Q 026496 187 LTLQEAETIALSILKQVMEEKV-TPNNVDIARV 218 (237)
Q Consensus 187 ~s~~ea~~l~~~~l~~~~~~~~-~~~~iei~ii 218 (237)
|+++||++++++||+.+.+++. ++++++|++|
T Consensus 158 ~~~~ea~~~~~~~l~~~~~~d~~~~~~~~v~vi 190 (190)
T PF00227_consen 158 LSLEEAIELALKALKEAIDRDILSGDNIEVAVI 190 (190)
T ss_dssp SSHHHHHHHHHHHHHHHHHHBTTSTSEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHhhCCccCCeEEEEEC
Confidence 9999999999999999999885 7889999986
No 35
>cd01912 proteasome_beta proteasome beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.5e-40 Score=268.15 Aligned_cols=183 Identities=29% Similarity=0.478 Sum_probs=171.6
Q ss_pred CcEEEEEeCCEEEEEEeccCCCCCcc-CCcccceEEEcCcEEEEEecchhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 026496 35 STAIGLKTKEGVVLAVEKRITSPLLE-PSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTT 113 (237)
Q Consensus 35 ~t~vgi~~~dgVvla~d~~~~~~~~~-~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 113 (237)
+|+|||+++||||||+|++.++++.. +++.+|||+|+++++++++|..+|++.+.++++.++..|++.++++++++.++
T Consensus 1 tt~i~i~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (189)
T cd01912 1 TTIVGIKGKDGVVLAADTRASAGSLVASRNFDKIFKISDNILLGTAGSAADTQALTRLLKRNLRLYELRNGRELSVKAAA 80 (189)
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEEcCCcCcEEEccCCEEEEccccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 68999999999999999999996654 88899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCcCCCCCcceeeEEEEEcC-CCCeEEEECCCCceeecceEEeCCCchhHHHHHHhhcCCCCCHHHH
Q 026496 114 QALCDLALRFGEGDEESMSRPFGVSLLIAGSDE-NGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEA 192 (237)
Q Consensus 114 ~~ls~~~~~~~~~~~~~~~rP~~~~~iv~G~d~-~g~~ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea 192 (237)
+++++.++.++ . |||++++||||+|+ ++|+||.+||+|++.+++++++|.++++++++||+.|+++||++||
T Consensus 81 ~~l~~~~~~~~------~-~P~~~~~iv~G~d~~~~~~l~~id~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~~s~~ea 153 (189)
T cd01912 81 NLLSNILYSYR------G-FPYYVSLIVGGVDKGGGPFLYYVDPLGSLIEAPFVATGSGSKYAYGILDRGYKPDMTLEEA 153 (189)
T ss_pred HHHHHHHHhcC------C-CCeEEEEEEEEEcCCCCeEEEEECCCCCeEecCEEEEcccHHHHHHHHHhccCCCCCHHHH
Confidence 99999995553 2 79999999999997 6899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccC-CCCcEEEEEEeCC-eEE
Q 026496 193 ETIALSILKQVMEEKV-TPNNVDIARVAPT-YHL 224 (237)
Q Consensus 193 ~~l~~~~l~~~~~~~~-~~~~iei~ii~~~-~~~ 224 (237)
++++.+||..+.+++. ++++++|++|+++ ++.
T Consensus 154 ~~~~~~~l~~~~~~d~~~~~~~~v~vi~~~g~~~ 187 (189)
T cd01912 154 VELVKKAIDSAIERDLSSGGGVDVAVITKDGVEE 187 (189)
T ss_pred HHHHHHHHHHHHHhcCccCCcEEEEEECCCCEEE
Confidence 9999999999999886 6888999999988 443
No 36
>cd01906 proteasome_protease_HslV proteasome_protease_HslV. This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleo
Probab=100.00 E-value=2e-40 Score=265.57 Aligned_cols=179 Identities=50% Similarity=0.798 Sum_probs=169.7
Q ss_pred CcEEEEEeCCEEEEEEeccCCCCCcc-CCcccceEEEcCcEEEEEecchhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 026496 35 STAIGLKTKEGVVLAVEKRITSPLLE-PSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTT 113 (237)
Q Consensus 35 ~t~vgi~~~dgVvla~d~~~~~~~~~-~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 113 (237)
+|+|||+++||||||+|++.++++.. +++.+|||+|+++++++++|..+|++.+.+.++.++..|++.++++++++.++
T Consensus 1 tt~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (182)
T cd01906 1 TTIVGIKGKDGVVLAADKRVTSGLLVASSTVEKIFKIDDHIGCAFAGLAADAQTLVERLRKEAQLYRLRYGEPIPVEALA 80 (182)
T ss_pred CcEEEEEeCCEEEEEEecccCCcCeecCCCcceEEEECCCEEEEEeeCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 68999999999999999999986644 78899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCcCCCCCcceeeEEEEEcC-CCCeEEEECCCCceeecceEEeCCCchhHHHHHHhhcCCCCCHHHH
Q 026496 114 QALCDLALRFGEGDEESMSRPFGVSLLIAGSDE-NGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEA 192 (237)
Q Consensus 114 ~~ls~~~~~~~~~~~~~~~rP~~~~~iv~G~d~-~g~~ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea 192 (237)
+.++++++++++. .|||++++|++|+|+ .+|+||.+||+|++.+++++++|++++.++++||+.|+++||.+||
T Consensus 81 ~~l~~~~~~~~~~-----~~p~~~~~lv~G~d~~~~~~Ly~id~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~s~~ea 155 (182)
T cd01906 81 KLLANLLYEYTQS-----LRPLGVSLLVAGVDEEGGPQLYSVDPSGSYIEYKATAIGSGSQYALGILEKLYKPDMTLEEA 155 (182)
T ss_pred HHHHHHHHHhCCC-----ccChheEEEEEEEeCCCCcEEEEECCCCCEeeccEEEECCCcHHHHHHHHHHccCCCCHHHH
Confidence 9999999888764 499999999999997 7899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccC-CCCcEEEEEE
Q 026496 193 ETIALSILKQVMEEKV-TPNNVDIARV 218 (237)
Q Consensus 193 ~~l~~~~l~~~~~~~~-~~~~iei~ii 218 (237)
++++++||+.+.+++. ++.+++|++|
T Consensus 156 ~~l~~~~l~~~~~~~~~~~~~~~i~ii 182 (182)
T cd01906 156 IELALKALKSALERDLYSGGNIEVAVI 182 (182)
T ss_pred HHHHHHHHHHHHcccCCCCCCEEEEEC
Confidence 9999999999999987 6788999875
No 37
>KOG0175 consensus 20S proteasome, regulatory subunit beta type PSMB5/PSMB8/PRE2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.9e-37 Score=247.02 Aligned_cols=197 Identities=25% Similarity=0.389 Sum_probs=188.1
Q ss_pred HhcCCcEEEEEeCCEEEEEEeccCCC-CCccCCcccceEEEcCcEEEEEecchhhHHHHHHHHHHHHHHHHHHhCCCCCH
Q 026496 31 IKLGSTAIGLKTKEGVVLAVEKRITS-PLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTV 109 (237)
Q Consensus 31 ~~~G~t~vgi~~~dgVvla~d~~~~~-~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~ 109 (237)
..+|||++|+++++|||+|+|+|++. +++.+...+||.+||++++-+++|-++||+.+-+.+.++|+.|.+++++.|++
T Consensus 68 ~~hGTTTLAF~f~~GvivAvDSRAs~G~YIasqtv~KVIeIn~ylLGTmAGgAADCqfWer~L~kecRL~eLRnkeriSV 147 (285)
T KOG0175|consen 68 FAHGTTTLAFKFKGGVIVAVDSRASAGSYIASQTVKKVIEINPYLLGTMAGGAADCQFWERVLAKECRLHELRNKERISV 147 (285)
T ss_pred ecCCceEEEEEecCcEEEEEeccccccceeechhhceeeeechhhhhcccCcchhhHHHHHHHHHHHHHHHHhcCcceeh
Confidence 45899999999999999999999999 78889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCcCCCCCcceeeEEEEEcCCCCeEEEECCCCceeecceEEeCCCchhHHHHHHhhcCCCCCH
Q 026496 110 ESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTL 189 (237)
Q Consensus 110 ~~la~~ls~~~~~~~~~~~~~~~rP~~~~~iv~G~d~~g~~ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~ 189 (237)
...++.|++++.+|.... +.+..+|||||+.||.||.||..|+-...+-+++|+|+.+++++|++.|+++||.
T Consensus 148 saASKllsN~~y~YkGmG-------LsmGtMi~G~Dk~GP~lyYVDseG~Rl~G~~FSVGSGs~yAYGVLDsgYr~dls~ 220 (285)
T KOG0175|consen 148 SAASKLLSNMVYQYKGMG-------LSMGTMIAGWDKKGPGLYYVDSEGTRLSGDLFSVGSGSTYAYGVLDSGYRYDLSD 220 (285)
T ss_pred HHHHHHHHHHHhhccCcc-------hhheeeEeeccCCCCceEEEcCCCCEecCceEeecCCCceeEEeeccCCCCCCCH
Confidence 999999999998887654 7889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcccC-CCCcEEEEEEeCC-eEEcCHHHHHHHH
Q 026496 190 QEAETIALSILKQVMEEKV-TPNNVDIARVAPT-YHLYTPSEVEAVI 234 (237)
Q Consensus 190 ~ea~~l~~~~l~~~~~~~~-~~~~iei~ii~~~-~~~~~~~ei~~~~ 234 (237)
+||.+|+++++..+.-||. +++-+.++.|+++ |..++..++.++.
T Consensus 221 eEA~~L~rrAI~hAThRDaySGG~vnlyHv~edGW~~v~~~Dv~~L~ 267 (285)
T KOG0175|consen 221 EEAYDLARRAIYHATHRDAYSGGVVNLYHVKEDGWVKVSNTDVSELH 267 (285)
T ss_pred HHHHHHHHHHHHHHHhcccccCceEEEEEECCccceecCCccHHHHH
Confidence 9999999999999999887 7888999999999 9999999998874
No 38
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-36 Score=232.74 Aligned_cols=187 Identities=22% Similarity=0.268 Sum_probs=175.5
Q ss_pred CcEEEEEeCCEEEEEEeccCCCCC-ccCCcccceEEEcCcEEEEEecchhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 026496 35 STAIGLKTKEGVVLAVEKRITSPL-LEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTT 113 (237)
Q Consensus 35 ~t~vgi~~~dgVvla~d~~~~~~~-~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 113 (237)
.+++||++.|+|++|+||...++. +..++.+|++.+++++.|+++|..+|+.++.+++.+.++.|++++|.+++|+.+|
T Consensus 2 e~llGIkg~dfvilAsDt~~~~si~~~k~~~dK~~~ls~~~lm~~~Ge~GDt~qF~eyi~~Ni~LYkirnGyeLSp~~aa 81 (200)
T KOG0177|consen 2 ETLLGIKGPDFVILASDTSAARSILVLKDDHDKIHRLSDHILMATVGEAGDTVQFTEYIQKNIQLYKIRNGYELSPSAAA 81 (200)
T ss_pred ceEEEeecCCEEEEeecchhhcceEEecccccceEEeccceeeeeecCCCceehHHHHHHhhhhHHhhhcCCcCCHHHHH
Confidence 368999999999999999987754 6688999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCcCCCCCcceeeEEEEEcCC-CCeEEEECCCCceeecceEEeCCCchhHHHHHHhhcCCCCCHHHH
Q 026496 114 QALCDLALRFGEGDEESMSRPFGVSLLIAGSDEN-GPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEA 192 (237)
Q Consensus 114 ~~ls~~~~~~~~~~~~~~~rP~~~~~iv~G~d~~-g~~ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea 192 (237)
+.+.+.+.++.+. .+||.|++|+||+|++ ||.||++|..|+..+.++++.|.++.+..++|+++|+++||.+||
T Consensus 82 hFtR~~La~~LRs-----r~~yqV~~LvaGYd~~~gp~L~~iDyla~~~~vpy~~hGy~~~f~~sIlDr~Y~pdmt~eea 156 (200)
T KOG0177|consen 82 HFTRRELAESLRS-----RTPYQVNILVAGYDPEEGPELYYIDYLATLVSVPYAAHGYGSYFCLSILDRYYKPDMTIEEA 156 (200)
T ss_pred HHHHHHHHHHHhc-----CCCceEEEEEeccCCCCCCceeeehhhhhcccCCcccccchhhhhHHHHHhhhCCCCCHHHH
Confidence 9999999988874 4899999999999975 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccC-CCCcEEEEEEeCC-eEEcC
Q 026496 193 ETIALSILKQVMEEKV-TPNNVDIARVAPT-YHLYT 226 (237)
Q Consensus 193 ~~l~~~~l~~~~~~~~-~~~~iei~ii~~~-~~~~~ 226 (237)
+++..+|+.++.+|-. +..++.+.||+|+ ++.++
T Consensus 157 ~~lmkKCv~El~kRlvin~~~f~v~IVdkdGir~~~ 192 (200)
T KOG0177|consen 157 LDLMKKCVLELKKRLVINLPGFIVKIVDKDGIRKLD 192 (200)
T ss_pred HHHHHHHHHHHHHhcccCCCCcEEEEEcCCCceecc
Confidence 9999999999999976 6789999999999 66554
No 39
>KOG0179 consensus 20S proteasome, regulatory subunit beta type PSMB1/PRE7 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-35 Score=230.94 Aligned_cols=184 Identities=22% Similarity=0.354 Sum_probs=174.1
Q ss_pred HhcCCcEEEEEeCCEEEEEEeccCCCCC-ccCCcccceEEEcCcEEEEEecchhhHHHHHHHHHHHHHHHHHHhCCCCCH
Q 026496 31 IKLGSTAIGLKTKEGVVLAVEKRITSPL-LEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTV 109 (237)
Q Consensus 31 ~~~G~t~vgi~~~dgVvla~d~~~~~~~-~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~ 109 (237)
..+|+|+|||++.|++|+|+|||.++.+ +.++...|||+++|+++++.+|.++|+..|...++...+.|.+.+++.|+.
T Consensus 26 ~~NGGT~vaIaG~dFavvA~DTR~s~gy~I~sR~~~Ki~~l~D~~vl~~sGF~aD~l~L~k~i~~r~~~Y~~~h~k~ms~ 105 (235)
T KOG0179|consen 26 EDNGGTTVAIAGEDFAVVAGDTRMSSGYNINSRDQSKIFKLGDNIVLGSSGFYADTLALVKVIKSRIKQYEHDHNKKMSI 105 (235)
T ss_pred ccCCceEEEEcCCceEEEecccccccceeeeccccchheeccCceEEecccchhhHHHHHHHHHHHHHHHhhcccccccH
Confidence 4799999999999999999999999976 668899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCcCCCCCcceeeEEEEEcCCC-CeEEEECCCCceeecceEEeCCCchhHHHHHHhhcC----
Q 026496 110 ESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENG-PSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYN---- 184 (237)
Q Consensus 110 ~~la~~ls~~~~~~~~~~~~~~~rP~~~~~iv~G~d~~g-~~ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~---- 184 (237)
...|+.|+..+ |.+|. .||.+..|++|+|++| +.+|..||.|++.+..+.|-|+++..++++|+++..
T Consensus 106 ~s~A~lls~~L--Y~kRF-----FPYYv~~ilaGiDeeGKG~VySyDPvGsyer~~~~AgGsa~~mI~PfLDnQi~~kn~ 178 (235)
T KOG0179|consen 106 HSAAQLLSTIL--YSKRF-----FPYYVFNILAGIDEEGKGAVYSYDPVGSYERVTCRAGGSAASMIQPFLDNQIGHKNQ 178 (235)
T ss_pred HHHHHHHHHHH--hhccc-----ccceeeeeeecccccCceeEEeecCCcceeeeeeecCCcchhhhhhhhhhhccCcCc
Confidence 99999999999 88876 8999999999999965 999999999999999999999999999999998752
Q ss_pred -------CCCCHHHHHHHHHHHHHHHhcccC-CCCcEEEEEEeCC
Q 026496 185 -------KDLTLQEAETIALSILKQVMEEKV-TPNNVDIARVAPT 221 (237)
Q Consensus 185 -------~~~s~~ea~~l~~~~l~~~~~~~~-~~~~iei~ii~~~ 221 (237)
..+|+|+|+.++.++|..+.||++ +++.++|+|++++
T Consensus 179 ~~e~~~~~~Ls~e~ai~lv~d~F~SAaERdI~tGD~l~i~I~tk~ 223 (235)
T KOG0179|consen 179 NLENAERTPLSLERAIRLVKDAFTSAAERDIYTGDKLEICIITKD 223 (235)
T ss_pred ccccCcccccCHHHHHHHHHHHhhhhhhcccccCCcEEEEEEecC
Confidence 368999999999999999999999 6889999999999
No 40
>KOG0173 consensus 20S proteasome, regulatory subunit beta type PSMB7/PSMB10/PUP1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-34 Score=232.66 Aligned_cols=187 Identities=29% Similarity=0.439 Sum_probs=176.5
Q ss_pred HHHHHhcCCcEEEEEeCCEEEEEEeccCCC-CCccCCcccceEEEcCcEEEEEecchhhHHHHHHHHHHHHHHHHHHhCC
Q 026496 27 AIEAIKLGSTAIGLKTKEGVVLAVEKRITS-PLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGE 105 (237)
Q Consensus 27 a~~~~~~G~t~vgi~~~dgVvla~d~~~~~-~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~ 105 (237)
+.++.+.|||++||.+|||||+++|+|.+. +.+..++..||+.|.++|+|+.+|-++|...+.+.+..+.+.+++..++
T Consensus 30 ~p~~tkTGTtIvgv~~k~gvIlgADtRaT~G~IvaDKnC~KIH~ia~~IyccGAGtAADte~vt~m~ss~l~Lh~l~t~R 109 (271)
T KOG0173|consen 30 APKATKTGTTIVGVIFKDGVILGADTRATEGPIVADKNCEKIHFIAPNIYCCGAGTAADTEMVTRMISSNLELHRLNTGR 109 (271)
T ss_pred CCcccccCcEEEEEEeCCeEEEeecccccCCCeeecchhHHHhhcccceEEccCCchhhHHHHHHHHHHHHHHHHhccCC
Confidence 346678899999999999999999999999 6677889999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCCcCCCCCcceeeEEEEEcCCCCeEEEECCCCceeecceEEeCCCchhHHHHHHhhcCC
Q 026496 106 PMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNK 185 (237)
Q Consensus 106 ~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~~~~iv~G~d~~g~~ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~ 185 (237)
.+++-..-+.+.+.+.+|... .++.+|++|+|.+|||||++-|.|+....+|.+.|+|+..+.++||.+|++
T Consensus 110 ~~rVv~A~~mlkQ~LFrYqG~--------IgA~LiiGGvD~TGpHLy~i~phGStd~~Pf~alGSGslaAmsvlEsr~k~ 181 (271)
T KOG0173|consen 110 KPRVVTALRMLKQHLFRYQGH--------IGAALILGGVDPTGPHLYSIHPHGSTDKLPFTALGSGSLAAMSVLESRWKP 181 (271)
T ss_pred CCceeeHHHHHHHHHHHhcCc--------ccceeEEccccCCCCceEEEcCCCCcCccceeeeccchHHHHHHHHHhcCc
Confidence 999988989999999888766 499999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcccC-CCCcEEEEEEeCC
Q 026496 186 DLTLQEAETIALSILKQVMEEKV-TPNNVDIARVAPT 221 (237)
Q Consensus 186 ~~s~~ea~~l~~~~l~~~~~~~~-~~~~iei~ii~~~ 221 (237)
+|+.|||++|+.+|+....-.|+ +++++++|+|++.
T Consensus 182 dlt~eea~~Lv~eAi~AGi~nDLgSGsnvdlcVI~~~ 218 (271)
T KOG0173|consen 182 DLTKEEAIKLVCEAIAAGIFNDLGSGSNVDLCVITKK 218 (271)
T ss_pred ccCHHHHHHHHHHHHHhhhccccCCCCceeEEEEeCC
Confidence 99999999999999999999988 7889999999976
No 41
>KOG0185 consensus 20S proteasome, regulatory subunit beta type PSMB4/PRE4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.8e-35 Score=232.26 Aligned_cols=217 Identities=22% Similarity=0.350 Sum_probs=194.5
Q ss_pred CCCceeCCCCccc------chhhHHHHHhcCCcEEEEEeCCEEEEEEeccCCC-CCccCCcccceEEEcCcEEEEEecch
Q 026496 10 RGVNTFSPEGRLF------QVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITS-PLLEPSSVEKIMEIDEHIGCAMSGLI 82 (237)
Q Consensus 10 ~~~~~fsp~G~~~------qveya~~~~~~G~t~vgi~~~dgVvla~d~~~~~-~~~~~~~~~ki~~i~~~i~~~~sG~~ 82 (237)
..+++|.|.|... .+...+.++..||++||+|++|||++|+|+..++ ++...++.+|+++++||+.+|+||..
T Consensus 11 pa~~~f~~~~~~m~~a~~~~~qrt~~p~vTGTSVla~ky~~GVviaaD~lgSYGslaR~~nVeRi~kVgdntllG~sGdi 90 (256)
T KOG0185|consen 11 PAPGTFYPSGSLMENAGDYPIQRTLNPIVTGTSVLALKYKDGVVIAADTLGSYGSLARYKNVERIFKVGDNTLLGASGDI 90 (256)
T ss_pred CCCCcCcCccchhhhccCCCcccccCceeccceEEEEEecCceEEEecccccchhhhhhcCceeeEEecCceEEecCccH
Confidence 4567888887543 2335667788999999999999999999999999 77889999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHH-HHhCCCCCHHHHHHHHHHHHHHhcCCCCcCCCCCcceeeEEEEEcCC-CCeEEEECCCCce
Q 026496 83 ADARTLVEHARVETQNHR-FSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDEN-GPSLYYTDPSGTF 160 (237)
Q Consensus 83 ~D~~~l~~~~~~~~~~~~-~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~~~~iv~G~d~~-g~~ly~vd~~G~~ 160 (237)
+|+|.+.+.+.+...+.. +..+..+.|+.++++|.+.+ |.+|+ .+.|++..++|||++++ .|+|-.+|..|..
T Consensus 91 sD~Q~i~r~L~~l~iedn~~~Dg~~l~Pk~ih~yltrvl--Y~rRs---KmnPlwntlvVgGv~~~g~~~lg~V~~~G~~ 165 (256)
T KOG0185|consen 91 SDFQYIQRVLEQLVIEDNRLDDGQSLGPKAIHSYLTRVL--YARRS---KMNPLWNTLVVGGVDNTGEPFLGYVDLLGVA 165 (256)
T ss_pred HHHHHHHHHHHHHHhcccccccccccChHHHHHHHHHHH--HHhhh---ccCchhhheeEeeecCCCCeeEEEEeecccc
Confidence 999999999998776654 57779999999999999999 99998 99999999999999985 5999999999999
Q ss_pred eecceEEeCCCchhHHHHHHhhcC---CCCCHHHHHHHHHHHHHHHhcccCC-CCcEEEEEEeCC-eEEcCHHHHH
Q 026496 161 WQCNAKAIGSGSEGADSSLQEQYN---KDLTLQEAETIALSILKQVMEEKVT-PNNVDIARVAPT-YHLYTPSEVE 231 (237)
Q Consensus 161 ~~~~~~a~G~g~~~~~~~Le~~~~---~~~s~~ea~~l~~~~l~~~~~~~~~-~~~iei~ii~~~-~~~~~~~ei~ 231 (237)
.+.+..|+|.|+.++.++|++.|. ++++.+||.+++.+||+....||.. .+++++++|+++ +..-.|..|+
T Consensus 166 Y~~~~vATGfg~hLa~P~lR~~~~~k~~~~s~eeA~~li~~cMrVL~YRD~ra~n~fqva~v~~eGv~i~~p~qv~ 241 (256)
T KOG0185|consen 166 YESPVVATGFGAHLALPLLRDEWEKKGEDLSREEAEALIEKCMRVLYYRDARASNEFQVATVDEEGVTISKPYQVK 241 (256)
T ss_pred ccCchhhhhhHHHhhhHHHHHhhhccchhhHHHHHHHHHHHHHHHHhccccccccceEEEEEcccceEecCceeee
Confidence 999999999999999999999997 4899999999999999999999984 567999999999 7776666554
No 42
>KOG0174 consensus 20S proteasome, regulatory subunit beta type PSMB6/PSMB9/PRE3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-34 Score=222.49 Aligned_cols=196 Identities=18% Similarity=0.309 Sum_probs=181.9
Q ss_pred HHhcCCcEEEEEeCCEEEEEEeccCCC-CCccCCcccceEEEcCcEEEEEecchhhHHHHHHHHHHHHHHHHHHhCCCCC
Q 026496 30 AIKLGSTAIGLKTKEGVVLAVEKRITS-PLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMT 108 (237)
Q Consensus 30 ~~~~G~t~vgi~~~dgVvla~d~~~~~-~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~ 108 (237)
.+..|+|++||.+++||||++|+|.+. .++.++..+|+.+|.|+|+||-||.++|.|.+.++++..+..|...++.++.
T Consensus 15 evstGTTImAv~y~gGVvlGaDSRTs~GayvanRvtDKlT~itD~i~cCRSGSAADtQaiaD~~~Y~L~~~~~q~~~~p~ 94 (224)
T KOG0174|consen 15 EVSTGTTIMAVEYDGGVVLGADSRTSTGAYVANRVTDKLTPITDNIYCCRSGSAADTQAIADIVRYHLELYTIQENKPPL 94 (224)
T ss_pred ccccCceEEEEEEcCcEEEeccCCccchHHHHhhhcccceeccccEEEecCCchhhHHHHHHHHHHHHHHhhhhcCCCch
Confidence 378999999999999999999999998 6677889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCcCCCCCcceeeEEEEEcCC-CCeEEEECCCCceeecceEEeCCCchhHHHHHHhhcCCCC
Q 026496 109 VESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDEN-GPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDL 187 (237)
Q Consensus 109 ~~~la~~ls~~~~~~~~~~~~~~~rP~~~~~iv~G~d~~-g~~ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~ 187 (237)
+...|+.++++..+|... +.+.+||||||+. |.++|.+.--|+..+.++..-|+|+.+++++++..|+++|
T Consensus 95 v~~aA~l~r~~~Y~~re~--------L~AgliVAGwD~~~gGqVY~iplGG~l~rq~~aIgGSGStfIYGf~D~~~r~nM 166 (224)
T KOG0174|consen 95 VHTAASLFREICYNYREM--------LSAGLIVAGWDEKEGGQVYSIPLGGSLTRQPFAIGGSGSTFIYGFCDANWRPNM 166 (224)
T ss_pred HHHHHHHHHHHHHhCHHh--------hhcceEEeecccccCceEEEeecCceEeecceeeccCCceeeeeeehhhcCCCC
Confidence 999999999999666543 6899999999975 8999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcccC-CCCcEEEEEEeCC---eEEcCHHHHHHH
Q 026496 188 TLQEAETIALSILKQVMEEKV-TPNNVDIARVAPT---YHLYTPSEVEAV 233 (237)
Q Consensus 188 s~~ea~~l~~~~l~~~~~~~~-~~~~iei~ii~~~---~~~~~~~ei~~~ 233 (237)
++||++.+..+++..+.+||- +++.|.+.+|+++ .+.+.++++..+
T Consensus 167 t~EE~~~fvk~Av~lAi~rDGsSGGviR~~~I~~~Gver~~~~~d~~~~~ 216 (224)
T KOG0174|consen 167 TLEECVRFVKNAVSLAIERDGSSGGVIRLVIINKAGVERRFFPGDKLGQF 216 (224)
T ss_pred CHHHHHHHHHHHHHHHHhccCCCCCEEEEEEEccCCceEEEecCCccccc
Confidence 999999999999999999997 5667999999999 777888887654
No 43
>KOG0180 consensus 20S proteasome, regulatory subunit beta type PSMB3/PUP3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.9e-32 Score=205.34 Aligned_cols=183 Identities=16% Similarity=0.220 Sum_probs=173.7
Q ss_pred hcCCcEEEEEeCCEEEEEEeccCCC-CCccCCcccceEEEcCcEEEEEecchhhHHHHHHHHHHHHHHHHHHhCCCCCHH
Q 026496 32 KLGSTAIGLKTKEGVVLAVEKRITS-PLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVE 110 (237)
Q Consensus 32 ~~G~t~vgi~~~dgVvla~d~~~~~-~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~ 110 (237)
-+|+++||+++|++|.||+|.|... ....+.+++|||+++|++++|.+|+..|+|.+.+.++.....|+++.+++|.|+
T Consensus 6 ynGg~vvAM~gk~cvaIa~D~RlG~q~~tistdf~ki~~igdr~y~GL~glatDvqtl~~~~~fr~nLy~lre~R~i~P~ 85 (204)
T KOG0180|consen 6 YNGGSVVAMAGKNCVAIASDLRLGVQSQTISTDFQKIFKIGDRLYLGLTGLATDVQTLLERLRFRKNLYELREEREIKPE 85 (204)
T ss_pred ecCceEEEEeCCceEEEEeccccceeeeeeeccchhheecCCeeEEeccccchhHHHHHHHHHHHHhHHHhhhhcccCcH
Confidence 4799999999999999999999988 667789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcCCCCCcceeeEEEEEcCC-CCeEEEECCCCceee-cceEEeCCCchhHHHHHHhhcCCCCC
Q 026496 111 STTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDEN-GPSLYYTDPSGTFWQ-CNAKAIGSGSEGADSSLQEQYNKDLT 188 (237)
Q Consensus 111 ~la~~ls~~~~~~~~~~~~~~~rP~~~~~iv~G~d~~-g~~ly~vd~~G~~~~-~~~~a~G~g~~~~~~~Le~~~~~~~s 188 (237)
.+++.+|..+ |..|. -||-+..+|||+|++ .|+|...|..|+... .++++.|.++++.++.+|..|+|+|.
T Consensus 86 ~~s~mvS~~l--YekRf-----gpYf~~PvVAGl~~~~kPfIc~mD~IGc~~~~~DFVvsGTa~e~L~GmCE~ly~pnme 158 (204)
T KOG0180|consen 86 TFSSMVSSLL--YEKRF-----GPYFTEPVVAGLDDDNKPFICGMDLIGCIDAPKDFVVSGTASEQLYGMCEALYEPNME 158 (204)
T ss_pred HHHHHHHHHH--HHhhc-----CCcccceeEeccCCCCCeeEeecccccCcCccCCeEEecchHHHHHHHHHHhcCCCCC
Confidence 9999999999 77765 799999999999986 599999999999765 67999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccC-CCCcEEEEEEeCC
Q 026496 189 LQEAETIALSILKQVMEEKV-TPNNVDIARVAPT 221 (237)
Q Consensus 189 ~~ea~~l~~~~l~~~~~~~~-~~~~iei~ii~~~ 221 (237)
.|+..+.+.++|-.+.+||. ++++..+++|+|+
T Consensus 159 pd~LFetisQa~Lna~DRDalSGwGa~vyiI~kd 192 (204)
T KOG0180|consen 159 PDELFETISQALLNAVDRDALSGWGAVVYIITKD 192 (204)
T ss_pred HHHHHHHHHHHHHhHhhhhhhccCCeEEEEEccc
Confidence 99999999999999999986 8999999999998
No 44
>PRK05456 ATP-dependent protease subunit HslV; Provisional
Probab=100.00 E-value=2.5e-31 Score=209.83 Aligned_cols=165 Identities=22% Similarity=0.280 Sum_probs=141.8
Q ss_pred CCcEEEEEeCCEEEEEEeccCCC-CCccCCcccceEEE-cCcEEEEEecchhhHHHHHHHHHHHHHHHHHHhCCCCCHHH
Q 026496 34 GSTAIGLKTKEGVVLAVEKRITS-PLLEPSSVEKIMEI-DEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVES 111 (237)
Q Consensus 34 G~t~vgi~~~dgVvla~d~~~~~-~~~~~~~~~ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~ 111 (237)
|+|+|||+++||||||+|+|.+. .++.+++.+||++| +++++|+++|..+|+|.|.++++.+++.|+. + . ++.
T Consensus 1 gtTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~KI~~i~~d~i~~~~aG~~aD~q~l~~~l~~~~~~y~~--~--~-~~~ 75 (172)
T PRK05456 1 GTTILAVRRNGKVAIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEHQG--N--L-LRA 75 (172)
T ss_pred CcEEEEEEECCEEEEEECCceEeCcEEEcCCCceEEEeCCCCEEEEEeccHHHHHHHHHHHHHHHHHccC--c--c-HHH
Confidence 78999999999999999999998 66778999999999 9999999999999999999999999998872 2 1 455
Q ss_pred HHHHHHHHHHHhcCCCCcCCCCCcceeeEEEEEcCCCCeEEEECCCCceeec--ceEEeCCCchhHHHHHHhhcC-CCCC
Q 026496 112 TTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQC--NAKAIGSGSEGADSSLQEQYN-KDLT 188 (237)
Q Consensus 112 la~~ls~~~~~~~~~~~~~~~rP~~~~~iv~G~d~~g~~ly~vd~~G~~~~~--~~~a~G~g~~~~~~~Le~~~~-~~~s 188 (237)
.++.+..+. .+ . ..+|+.+++|++ |. |+||.+|+.|+..+. +++++|+|+.++.++||++|+ ++|
T Consensus 76 ~a~l~~~l~-~~---~---~~~~l~~~~lv~--d~--~~ly~id~~G~~~~~~~~~~a~GSGs~~a~g~ld~~y~~~~m- 143 (172)
T PRK05456 76 AVELAKDWR-TD---R---YLRRLEAMLIVA--DK--EHSLIISGNGDVIEPEDGIIAIGSGGNYALAAARALLENTDL- 143 (172)
T ss_pred HHHHHHHHH-hc---c---CCCccEEEEEEE--cC--CcEEEECCCCcEeccCCCeEEEecCHHHHHHHHHHhhhcCCC-
Confidence 554443221 11 1 236888999995 33 799999999999776 799999999999999999999 999
Q ss_pred HHHHHHHHHHHHHHHhcccC-CCCcEEEEE
Q 026496 189 LQEAETIALSILKQVMEEKV-TPNNVDIAR 217 (237)
Q Consensus 189 ~~ea~~l~~~~l~~~~~~~~-~~~~iei~i 217 (237)
||++++++|++.+.+||. ++++|++..
T Consensus 144 --eA~~la~kai~~A~~Rd~~sg~~i~v~~ 171 (172)
T PRK05456 144 --SAEEIAEKALKIAADICIYTNHNITIEE 171 (172)
T ss_pred --CHHHHHHHHHHHHHHhCeeCCCcEEEEE
Confidence 999999999999999997 778888764
No 45
>cd01913 protease_HslV Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome. HslV is a dimer of hexamers (a dodecamer) that forms a central proteolytic chamber with active sites on the interior walls of the cavity. HslV shares significant sequence and structural similarity with the proteasomal beta-subunit and both are members of the Ntn-family of hydrolases. HslV has a nucleophilic threonine residue at its N-terminus that is exposed after processing of the propeptide and is directly involved in active site catalysis.
Probab=99.97 E-value=5.7e-30 Score=200.72 Aligned_cols=163 Identities=20% Similarity=0.193 Sum_probs=138.0
Q ss_pred CcEEEEEeCCEEEEEEeccCCC-CCccCCcccceEEEcC-cEEEEEecchhhHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Q 026496 35 STAIGLKTKEGVVLAVEKRITS-PLLEPSSVEKIMEIDE-HIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVEST 112 (237)
Q Consensus 35 ~t~vgi~~~dgVvla~d~~~~~-~~~~~~~~~ki~~i~~-~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l 112 (237)
+|+|||+++||||||+|+|.+. .++.+++.+||++|++ +++|+++|..+|++.|.++++.+++.|+.+.++ .+
T Consensus 1 tTivgi~~~dgVvlaaD~r~t~G~~v~~~~~~Ki~~i~d~~i~~~~aG~~aD~~~l~~~~~~~~~~y~~~~~~-----~a 75 (171)
T cd01913 1 TTILAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVIAGFAGSTADAFTLFERFEAKLEQYPGNLLR-----AA 75 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeccEEEcCCcceEEEeCCCCEEEEecccHHHHHHHHHHHHHHHHHhhchHHH-----HH
Confidence 6899999999999999999998 6677899999999999 999999999999999999999999999887774 33
Q ss_pred HHHHHHHHHHhcCCCCcCCCCCcc-eeeEEEEEcCCCCeEEEECCCCceeecc--eEEeCCCchhHHHHHHhhcCCC-CC
Q 026496 113 TQALCDLALRFGEGDEESMSRPFG-VSLLIAGSDENGPSLYYTDPSGTFWQCN--AKAIGSGSEGADSSLQEQYNKD-LT 188 (237)
Q Consensus 113 a~~ls~~~~~~~~~~~~~~~rP~~-~~~iv~G~d~~g~~ly~vd~~G~~~~~~--~~a~G~g~~~~~~~Le~~~~~~-~s 188 (237)
++.+..++ .| + .+|+. +.+|++++ ++||.+||.|.+.+.+ +.++|+|+.+++++||..|+++ ||
T Consensus 76 a~l~~~l~-~~--~-----~~~~l~a~~iv~~~----~~ly~id~~G~~ie~~~~~~a~GSGS~ya~g~ld~~yk~~~ms 143 (171)
T cd01913 76 VELAKDWR-TD--R-----YLRRLEAMLIVADK----EHTLLISGNGDVIEPDDGIAAIGSGGNYALAAARALLDHTDLS 143 (171)
T ss_pred HHHHHHHH-hc--c-----CcCceEEEEEEeCC----CcEEEECCCCCEeccCCCeEEEeCCHHHHHHHHHHhhccCCCC
Confidence 44332221 12 1 24554 66777654 4899999999999984 9999999999999999999995 99
Q ss_pred HHHHHHHHHHHHHHHhcccC-CCCcEEEEE
Q 026496 189 LQEAETIALSILKQVMEEKV-TPNNVDIAR 217 (237)
Q Consensus 189 ~~ea~~l~~~~l~~~~~~~~-~~~~iei~i 217 (237)
+.+++.++++.+.+||. ++++|++..
T Consensus 144 ---~~~la~~Av~~A~~rd~~tg~~i~~~~ 170 (171)
T cd01913 144 ---AEEIARKALKIAADICIYTNHNITVEE 170 (171)
T ss_pred ---HHHHHHHHHHHHHhhCcccCCCEEEEe
Confidence 55999999999999997 788888754
No 46
>cd01901 Ntn_hydrolase The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid. N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either t
Probab=99.97 E-value=4.2e-29 Score=194.99 Aligned_cols=161 Identities=45% Similarity=0.648 Sum_probs=153.6
Q ss_pred CcEEEEEeCCEEEEEEeccCCCCCcc-CCcccceEEEcCcEEEEEecchhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 026496 35 STAIGLKTKEGVVLAVEKRITSPLLE-PSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTT 113 (237)
Q Consensus 35 ~t~vgi~~~dgVvla~d~~~~~~~~~-~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 113 (237)
+|+||++++||||+|+|++.+.+... ....+|++.++++++++++|..+|++.+.++++.+++.|++.++.++++..++
T Consensus 1 ~t~i~i~~~~gvila~d~~~~~~~~~~~~~~~ki~~~~~~~~~~~sG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (164)
T cd01901 1 STSVAIKGKGGVVLAADKRLSSGLPVAGSPVIKIGKNEDGIAWGLAGLAADAQTLVRRLREALQLYRLRYGEPISVVALA 80 (164)
T ss_pred CcEEEEEeCCEEEEEEecccCccCeecCCCcceEEEecCCeEEEEecChHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 58999999999999999999886655 77889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCcCCCCCcceeeEEEEEcCCCCeEEEECCCCceeec-ceEEeCCCchhHHHHHHhhcCCCCCHHHH
Q 026496 114 QALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQC-NAKAIGSGSEGADSSLQEQYNKDLTLQEA 192 (237)
Q Consensus 114 ~~ls~~~~~~~~~~~~~~~rP~~~~~iv~G~d~~g~~ly~vd~~G~~~~~-~~~a~G~g~~~~~~~Le~~~~~~~s~~ea 192 (237)
+.+++.++.+++ . ||+++++|++|+|+++|+||.+||.|++.++ +++++|.++..+.++|++.++++++.+|+
T Consensus 81 ~~~~~~~~~~~~-~-----~p~~~~~iiag~~~~~~~l~~id~~g~~~~~~~~~~~G~~~~~~~~~l~~~~~~~~~~~~~ 154 (164)
T cd01901 81 KELAKLLQVYTQ-G-----RPFGVNLIVAGVDEGGGNLYYIDPSGPVIENPGAVATGSRSQRAKSLLEKLYKPDMTLEEA 154 (164)
T ss_pred HHHHHHHHHhcC-C-----CCcceEEEEEEEcCCCCEEEEECCCcCEeecCcEEEECCCCHHHHHHHHHHhcCCCCHHHH
Confidence 999999988876 3 9999999999999988999999999999999 99999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 026496 193 ETIALSILK 201 (237)
Q Consensus 193 ~~l~~~~l~ 201 (237)
++++.+||.
T Consensus 155 ~~~~~~~l~ 163 (164)
T cd01901 155 VELALKALK 163 (164)
T ss_pred HHHHHHHHh
Confidence 999999986
No 47
>TIGR03692 ATP_dep_HslV ATP-dependent protease HslVU, peptidase subunit. The ATP-dependent protease HslVU, a complex of hexameric HslU active as a protein-unfolding ATPase and dodecameric HslV, the catalytic threonine protease.
Probab=99.97 E-value=1.7e-29 Score=197.96 Aligned_cols=164 Identities=22% Similarity=0.275 Sum_probs=136.7
Q ss_pred CcEEEEEeCCEEEEEEeccCCC-CCccCCcccceEEE-cCcEEEEEecchhhHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Q 026496 35 STAIGLKTKEGVVLAVEKRITS-PLLEPSSVEKIMEI-DEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVEST 112 (237)
Q Consensus 35 ~t~vgi~~~dgVvla~d~~~~~-~~~~~~~~~ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l 112 (237)
+|+|||+++||||||+|+|.+. .++.+++.+||++| +++++|+++|..+|++.|.++++.+++.|+... .+.+
T Consensus 1 tTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~Ki~~i~~d~i~~~~aG~~aD~q~l~~~~~~~~~~y~~~~-----~~~~ 75 (171)
T TIGR03692 1 TTILAVRRNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEYQGNL-----TRAA 75 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeceEEEcCCCCeEEEeCCCCEEEEecchHHHHHHHHHHHHHHHHHccCch-----HHHH
Confidence 6899999999999999999998 66778999999999 599999999999999999999999999887632 3555
Q ss_pred HHHHHHHHHHhcCCCCcCCCCCcceeeEEEEEcCCCCeEEEECCCCceeec--ceEEeCCCchhHHHHHHhhc-CCCCCH
Q 026496 113 TQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQC--NAKAIGSGSEGADSSLQEQY-NKDLTL 189 (237)
Q Consensus 113 a~~ls~~~~~~~~~~~~~~~rP~~~~~iv~G~d~~g~~ly~vd~~G~~~~~--~~~a~G~g~~~~~~~Le~~~-~~~~s~ 189 (237)
++.+++ +..+. ..+.+.+.+|++|+ ++||.+||.|.+.+. ++.++|+|+.+++++||..| +++|+
T Consensus 76 a~l~~~----~~~~~---~~~~l~a~~iv~~~----~~ly~i~~~G~~ie~~~~~~a~GSGS~~a~g~ld~~y~~~~~s- 143 (171)
T TIGR03692 76 VELAKD----WRTDR---YLRRLEAMLIVADK----ETSLLISGTGDVIEPEDGIAAIGSGGNYALAAARALLRNTDLS- 143 (171)
T ss_pred HHHHHH----Hhhcc---cccccEEEEEEEcC----CCEEEEcCCCcEeccCCCeEEEeCCHHHHHHHHHHhhhcCCCC-
Confidence 555443 21111 12334477777644 489999999999996 69999999999999999999 56777
Q ss_pred HHHHHHHHHHHHHHhcccC-CCCcEEEEE
Q 026496 190 QEAETIALSILKQVMEEKV-TPNNVDIAR 217 (237)
Q Consensus 190 ~ea~~l~~~~l~~~~~~~~-~~~~iei~i 217 (237)
|++++.++++.+.++|. ++++|++..
T Consensus 144 --a~~la~~Av~~A~~rd~~sg~~i~v~~ 170 (171)
T TIGR03692 144 --AEEIAREALKIAADICIYTNHNITIEE 170 (171)
T ss_pred --HHHHHHHHHHHHHhhCccCCCCEEEEe
Confidence 99999999999999997 788888754
No 48
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=99.51 E-value=6.8e-15 Score=75.53 Aligned_cols=23 Identities=74% Similarity=1.324 Sum_probs=22.2
Q ss_pred CCCCCceeCCCCcccchhhHHHH
Q 026496 8 YDRGVNTFSPEGRLFQVEYAIEA 30 (237)
Q Consensus 8 yd~~~~~fsp~G~~~qveya~~~ 30 (237)
||.++|+|||+|||+|||||++|
T Consensus 1 YD~~~t~FSp~Grl~QVEYA~~A 23 (23)
T PF10584_consen 1 YDRSITTFSPDGRLFQVEYAMKA 23 (23)
T ss_dssp TSSSTTSBBTTSSBHHHHHHHHH
T ss_pred CCCCceeECCCCeEEeeEeeecC
Confidence 89999999999999999999987
No 49
>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=5e-13 Score=101.40 Aligned_cols=168 Identities=21% Similarity=0.251 Sum_probs=128.4
Q ss_pred cCCcEEEEEeCCEEEEEEeccCCC-CCccCCcccceEEE-cCcEEEEEecchhhHHHHHHHHHHHHHHHHHHhCCCCCHH
Q 026496 33 LGSTAIGLKTKEGVVLAVEKRITS-PLLEPSSVEKIMEI-DEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVE 110 (237)
Q Consensus 33 ~G~t~vgi~~~dgVvla~d~~~~~-~~~~~~~~~ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~ 110 (237)
++||+++++-++-+++++|.+++- +.+...+..|+..| +.++..|++|..+|+..|.+.+..+++.|. .
T Consensus 3 h~TTiv~vr~~gkv~iagDGQVtlG~tvmK~narKvRkl~~gkvlaGFAGstADaftLfe~fe~kle~~~---------g 73 (178)
T COG5405 3 HMTTIVAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEQYQ---------G 73 (178)
T ss_pred eeEEEEEEeeCCeEEEecCceEeecceeeeccHHHHHHHcCCcEEEEecccchhHHHHHHHHHHHHHHcc---------C
Confidence 689999999999999999999988 55556666666555 458999999999999999999999998863 2
Q ss_pred HHHHHHHHHHHHhcCCCCcCCCCCcceeeEEEEEcCCCCeEEEECCCCceee--cceEEeCCCchhHHHHHHhhcCC-CC
Q 026496 111 STTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQ--CNAKAIGSGSEGADSSLQEQYNK-DL 187 (237)
Q Consensus 111 ~la~~ls~~~~~~~~~~~~~~~rP~~~~~iv~G~d~~g~~ly~vd~~G~~~~--~~~~a~G~g~~~~~~~Le~~~~~-~~ 187 (237)
.|.+..-++.+.|.... .+|-+.+-++++-- -.++-+..+|-..+ .+.+++|+|..++.+-....+.. ++
T Consensus 74 ~L~raavelaKdwr~Dk---~lr~LEAmllVad~----~~il~isG~gdV~epe~~~~aIGSGgnyAl~AarAl~~~~~l 146 (178)
T COG5405 74 DLFRAAVELAKDWRTDK---YLRKLEAMLLVADK----THILIITGNGDVIEPEDDIIAIGSGGNYALSAARALMENTEL 146 (178)
T ss_pred cHHHHHHHHHHhhhhhh---HHHHHhhheeEeCC----CcEEEEecCcceecCCCCeEEEcCCchHHHHHHHHHHhccCC
Confidence 23333344455555443 56777888888743 45888999999776 35899999999998887777643 44
Q ss_pred CHHHHHHHHHHHHHHHhcccC-CCCcEEEEEEe
Q 026496 188 TLQEAETIALSILKQVMEEKV-TPNNVDIARVA 219 (237)
Q Consensus 188 s~~ea~~l~~~~l~~~~~~~~-~~~~iei~ii~ 219 (237)
+|-+++.++|..+.+-++ +.+++.|..+.
T Consensus 147 ---sA~eIa~~sl~iA~eiciyTN~ni~ve~l~ 176 (178)
T COG5405 147 ---SAREIAEKSLKIAGDICIYTNHNIVVEELR 176 (178)
T ss_pred ---CHHHHHHHHHhhhheEEEecCCcEEEEEee
Confidence 456788899998887765 66777776654
No 50
>COG3484 Predicted proteasome-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=3e-12 Score=100.62 Aligned_cols=186 Identities=18% Similarity=0.227 Sum_probs=142.8
Q ss_pred CcEEEEEeCCEEEEEEeccCCCCCccCCcccceEEEc---Cc-EEEEEecchhhHHHHHHHHHHHHHHHHHHhCC-CCCH
Q 026496 35 STAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEID---EH-IGCAMSGLIADARTLVEHARVETQNHRFSYGE-PMTV 109 (237)
Q Consensus 35 ~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~ki~~i~---~~-i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~-~i~~ 109 (237)
+.|||++...|.|+++|+|...++-....++|+|... ++ ++++.+|+.+=.|.+++.+.+..+...-..-. -.+.
T Consensus 2 TYCv~l~l~~GlVf~sDsRTNAGvD~istfkKl~~~~~pGdRvlvl~taGNLA~tQaV~~ll~e~~~~d~~~~L~n~~sm 81 (255)
T COG3484 2 TYCVGLILDFGLVFGSDSRTNAGVDYISTFKKLFVFELPGDRVLVLCTAGNLAITQAVLHLLDERIQRDDGDSLLNIPSM 81 (255)
T ss_pred ceEEEEEeccceEEecccccccCchHHHHHHHHhhccCCCceEEEEEecCccHHHHHHHHHHHHHhhccchhhhhcchhH
Confidence 5799999999999999999877664444556666542 22 67788999999999999998877532211111 2344
Q ss_pred HHHHHHHHHHHHHhcCCCCc---CCCCCcceeeEEEEEcCCC-CeEEEECCCCceee----cceEEeCCCchhHHHHHHh
Q 026496 110 ESTTQALCDLALRFGEGDEE---SMSRPFGVSLLIAGSDENG-PSLYYTDPSGTFWQ----CNAKAIGSGSEGADSSLQE 181 (237)
Q Consensus 110 ~~la~~ls~~~~~~~~~~~~---~~~rP~~~~~iv~G~d~~g-~~ly~vd~~G~~~~----~~~~a~G~g~~~~~~~Le~ 181 (237)
-..+..+.+..++...+..- -..--|.|++|++|.-.++ |.||.+.|.|++.+ .++.-+|. ..+.+++|++
T Consensus 82 ~eattlvgetvrEv~~rds~~leka~~dfn~sfllGGQI~G~pp~Ly~IYpqGNFIqaT~etpf~QiGE-tKYGKPildR 160 (255)
T COG3484 82 YEATTLVGETVREVQARDSPALEKAGIDFNCSFLLGGQIKGEPPRLYLIYPQGNFIQATPETPFLQIGE-TKYGKPILDR 160 (255)
T ss_pred HHHHHHHHHHHHHHHhccCchhhccCcceeEEEEEcceecCCCceeEEEccCCCeeecCCCCceeEccc-cccCchhhhh
Confidence 55666677666655544400 0112489999999987765 78999999999885 58999996 7788999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHhcccCC-CCcEEEEEEeCC
Q 026496 182 QYNKDLTLQEAETIALSILKQVMEEKVT-PNNVDIARVAPT 221 (237)
Q Consensus 182 ~~~~~~s~~ea~~l~~~~l~~~~~~~~~-~~~iei~ii~~~ 221 (237)
.+..+++++|+.+.++-+|....+..++ +-.+++.++.++
T Consensus 161 ~i~~~~pLeea~kcaLvS~DSTlkSNiSVGlPldLl~~e~d 201 (255)
T COG3484 161 TITYDTPLEEAAKCALVSFDSTLKSNISVGLPLDLLVYEAD 201 (255)
T ss_pred hhhccCCHHHHhhheEEecchhhhccccccCCceeEEEecc
Confidence 9999999999999999999999999886 557999999988
No 51
>COG4079 Uncharacterized protein conserved in archaea [Function unknown]
Probab=97.05 E-value=0.034 Score=45.76 Aligned_cols=170 Identities=19% Similarity=0.244 Sum_probs=103.1
Q ss_pred CcEEEEEeCCEEEEEEeccCCCCCccCCcccceEEEcCcEEEEEecchhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Q 026496 35 STAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQ 114 (237)
Q Consensus 35 ~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~ 114 (237)
+.+|+..+++|.|+|.|+|. +.+-|.-.|.+.|-+ ++..|.--+-+.|++
T Consensus 2 tLviay~gknGaviaGDrR~---------------------i~frgdee~re~lEe---------kLYsGeIkteEEL~r 51 (293)
T COG4079 2 TLVIAYIGKNGAVIAGDRRE---------------------ITFRGDEEDREKLEE---------KLYSGEIKTEEELAR 51 (293)
T ss_pred eEEEEEecCCCcEEeccceE---------------------EEEecChhHHHHHHH---------HhhcCccccHHHHHH
Confidence 56899999999999999872 345566666555443 334555566677776
Q ss_pred HHHHHHHHhcCCCCcCCCCCcceeeEEEEEcCCC------CeEEEECC-------CCceee-------cceEEeCCC--c
Q 026496 115 ALCDLALRFGEGDEESMSRPFGVSLLIAGSDENG------PSLYYTDP-------SGTFWQ-------CNAKAIGSG--S 172 (237)
Q Consensus 115 ~ls~~~~~~~~~~~~~~~rP~~~~~iv~G~d~~g------~~ly~vd~-------~G~~~~-------~~~~a~G~g--~ 172 (237)
...++--+++-..-+...|-..-+++++.+...+ -.+|..-. .|+-.. ....+.|.. .
T Consensus 52 ~aeel~Vki~vtDdr~KVrk~~d~VvvGEV~s~~~~~vkRRRvYAT~Ga~aIvel~gs~vts~~~g~g~aiIv~Gnk~~K 131 (293)
T COG4079 52 KAEELGVKITVTDDRNKVRKRNDGVVVGEVSSVERGIVKRRRVYATAGAYAIVELRGSEVTSTSQGKGSAIIVFGNKFTK 131 (293)
T ss_pred HHHHcCCEEEEEcchHhhhcccCcEEEEEeecccccceeeeEEeecCCceEEEEecCCeeEeeecCCCceEEEECcHHHH
Confidence 6544332111100001223333445555555432 23443321 122110 112233321 2
Q ss_pred hhHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhcccC-CCCcEEEEEEeCC---eEEcCHHHHHHHH
Q 026496 173 EGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKV-TPNNVDIARVAPT---YHLYTPSEVEAVI 234 (237)
Q Consensus 173 ~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~~~-~~~~iei~ii~~~---~~~~~~~ei~~~~ 234 (237)
+.+..+|.+.|.+-++++++..+..++|..+..... .+..++++.+++. +.++-+.+++.+.
T Consensus 132 e~aneflk~~l~~k~~lqd~~dal~elfe~vss~tpsVskeydiy~vs~~~d~~~rl~kkDie~L~ 197 (293)
T COG4079 132 EVANEFLKDNLTKKSKLQDAVDALMELFETVSSKTPSVSKEYDIYQVSSNVDPVLRLVKKDIETLR 197 (293)
T ss_pred HHHHHHHHhhccCCCCHHHHHHHHHHHHHHhhcCCCcccceeEEEEecCCcCHHHHHHHHHHHHHH
Confidence 557788999999999999999999999999886665 4678999999876 5566666766554
No 52
>PF09894 DUF2121: Uncharacterized protein conserved in archaea (DUF2121); InterPro: IPR016754 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. They do show distant similarity to NTPases and to nucleic acid binding enzymes.
Probab=96.91 E-value=0.012 Score=46.81 Aligned_cols=153 Identities=21% Similarity=0.238 Sum_probs=89.9
Q ss_pred CcEEEEEeCCEEEEEEeccCCCCCccCCcccceEEEcCcEEEEEecchhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Q 026496 35 STAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQ 114 (237)
Q Consensus 35 ~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~ 114 (237)
+.+||.-+++|+|+|+|+|. +++-|.......|-+. +..|.--+-+.|.+
T Consensus 2 SLII~y~GknGaViaGDkR~---------------------I~F~G~~~~re~LEee---------LYsG~IktdeEL~k 51 (194)
T PF09894_consen 2 SLIIAYYGKNGAVIAGDKRN---------------------IAFRGDEEKREKLEEE---------LYSGKIKTDEELLK 51 (194)
T ss_pred eEEEEEecCCCcEEecccee---------------------eeecCCHHHHHHHHHH---------HhCCccCCHHHHHH
Confidence 56899999999999999883 4566666665554432 23444445555554
Q ss_pred HHHHHH---HHhcCCCCcCCCCCcceeeEEEEEcC------CCCeEEEE-------CCCCceeec-------ceEEeCCC
Q 026496 115 ALCDLA---LRFGEGDEESMSRPFGVSLLIAGSDE------NGPSLYYT-------DPSGTFWQC-------NAKAIGSG 171 (237)
Q Consensus 115 ~ls~~~---~~~~~~~~~~~~rP~~~~~iv~G~d~------~g~~ly~v-------d~~G~~~~~-------~~~a~G~g 171 (237)
....+- +-.-.+. ..+-.+- ++++.+-. ..-.+|.. |-.|.-..- .....|..
T Consensus 52 kA~Elgv~i~I~D~r~---KV~~~~~-vlvGEV~s~~g~~skRRRiY~t~g~~~Ivei~~~~i~~~~~g~~sgiIVfGNk 127 (194)
T PF09894_consen 52 KAEELGVKIKITDDRE---KVRKIGD-VLVGEVTSISGKDSKRRRIYATKGKYAIVEIENDEITNKSRGEGSGIIVFGNK 127 (194)
T ss_pred HHHHcCCEEEEecCch---heEEeCC-EEEEEEEEEcCccceeeEEEecCCCEEEEEecCCeEEEEecCCceeEEEECCH
Confidence 432211 0000000 1122222 44443332 12345543 222221111 12233322
Q ss_pred --chhHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhcccCC-CCcEEEEEEeCC
Q 026496 172 --SEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVT-PNNVDIARVAPT 221 (237)
Q Consensus 172 --~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~~~~-~~~iei~ii~~~ 221 (237)
.+.+...|.++|++.|+++++..+..++|+.+.+...+ +..+++...++.
T Consensus 128 ~~K~ia~~~lkk~~~~k~~l~~i~~i~~~i~~~~a~~tpsvS~~~d~~~~~~~ 180 (194)
T PF09894_consen 128 FTKEIANKELKKYWKPKMSLKDIENIFEKIMEEVASKTPSVSKEYDIYITTKK 180 (194)
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhcCCCccCcEEEEEeccc
Confidence 26788899999999999999999999999999877664 667998877765
No 53
>KOG3361 consensus Iron binding protein involved in Fe-S cluster formation [Energy production and conversion]
Probab=89.86 E-value=0.96 Score=33.86 Aligned_cols=44 Identities=39% Similarity=0.402 Sum_probs=40.8
Q ss_pred EEECCCCceeecceEEeCCCchhHHHHHHhhcCCCCCHHHHHHH
Q 026496 152 YYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETI 195 (237)
Q Consensus 152 y~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l 195 (237)
..+|-+|.+.+.+|-..|.|+..+-+-+-..|-..+++|||.++
T Consensus 71 Ikvd~~g~I~dakFKTFGCGSAIASSS~aTewvkgkt~dea~kI 114 (157)
T KOG3361|consen 71 IKVDDSGVIEDAKFKTFGCGSAIASSSLATEWVKGKTLDEALKI 114 (157)
T ss_pred EEECCCCcEEEeeeeecccchHhhhhHHHHHHHccccHHHHHhc
Confidence 56888999999999999999999999999999999999999875
No 54
>PRK08868 flagellar protein FlaG; Provisional
Probab=55.30 E-value=51 Score=25.27 Aligned_cols=49 Identities=14% Similarity=0.150 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHhcc-c--C--CCCcEEEEEEeCC----eEEcCHHHHHHHHHhC
Q 026496 189 LQEAETIALSILKQVMEE-K--V--TPNNVDIARVAPT----YHLYTPSEVEAVINRL 237 (237)
Q Consensus 189 ~~ea~~l~~~~l~~~~~~-~--~--~~~~iei~ii~~~----~~~~~~~ei~~~~~~~ 237 (237)
+++|++-+-+.+...... . + ..+.+-|.|++++ ++.+|+||+-++.++|
T Consensus 73 l~~aVeklNe~~~~~n~~L~F~vdeetgr~VVkViD~~T~EVIRQIP~Ee~L~la~~l 130 (144)
T PRK08868 73 LEKMVEQMNEFVKSINKGLSFRVDEESGRDVVTIYEASTGDIIRQIPDEEMLEVLRRL 130 (144)
T ss_pred HHHHHHHHHHHHHhhcCceEEEEecCCCCEEEEEEECCCCceeeeCCCHHHHHHHHHH
Confidence 445555555555554322 1 2 2456889999987 9999999998887653
No 55
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=54.81 E-value=17 Score=23.34 Aligned_cols=32 Identities=28% Similarity=0.370 Sum_probs=28.1
Q ss_pred ceeCC-CCcccchhhHHHHHhcCCcEEEEEeCC
Q 026496 13 NTFSP-EGRLFQVEYAIEAIKLGSTAIGLKTKE 44 (237)
Q Consensus 13 ~~fsp-~G~~~qveya~~~~~~G~t~vgi~~~d 44 (237)
|.||+ +|.+.--++...+..+|-..+||.-.+
T Consensus 6 t~~S~~~~~~~~~~~~~~a~~~g~~~v~iTDh~ 38 (67)
T smart00481 6 SDYSLLDGALSPEELVKRAKELGLKAIAITDHG 38 (67)
T ss_pred cCCccccccCCHHHHHHHHHHcCCCEEEEeeCC
Confidence 46888 898888899999999999999998776
No 56
>PF08140 Cuticle_1: Crustacean cuticle protein repeat; InterPro: IPR012539 This family consists of the cuticle proteins from the Cancer pagurus (Rock crab) and the Homarus americanus (American lobster). These proteins are isolated from the calcified regions of the crustacean and they contain two copies of an 18 residue sequence motif, which thus far has been found only in crustacean calcified exoskeletons [].; GO: 0042302 structural constituent of cuticle
Probab=54.33 E-value=22 Score=20.89 Aligned_cols=29 Identities=31% Similarity=0.441 Sum_probs=22.4
Q ss_pred eeCCCCcccchhhHHHHHhcCCcEEEEEeCCEEEEE
Q 026496 14 TFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLA 49 (237)
Q Consensus 14 ~fsp~G~~~qveya~~~~~~G~t~vgi~~~dgVvla 49 (237)
+-.|||+..|+. .|-.-|.+.+..|+|+.
T Consensus 5 ii~~dG~~~q~~-------~~~a~ivl~GpSG~v~s 33 (40)
T PF08140_consen 5 IITPDGTNVQFP-------HGVANIVLIGPSGAVLS 33 (40)
T ss_pred eECCCCCEEECC-------cccceEEEECCceEEee
Confidence 457999999965 44447788899998875
No 57
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=52.41 E-value=9.4 Score=23.09 Aligned_cols=33 Identities=15% Similarity=0.286 Sum_probs=24.5
Q ss_pred EeCCCchhHHHHHHhhc-CCCCCHHHHHHHHHHH
Q 026496 167 AIGSGSEGADSSLQEQY-NKDLTLQEAETIALSI 199 (237)
Q Consensus 167 a~G~g~~~~~~~Le~~~-~~~~s~~ea~~l~~~~ 199 (237)
+.|+....+...+++.. .++++.++.++.+++.
T Consensus 12 ~LGy~~~e~~~av~~~~~~~~~~~e~~ik~aLk~ 45 (47)
T PF07499_consen 12 SLGYSKAEAQKAVSKLLEKPGMDVEELIKQALKL 45 (47)
T ss_dssp HTTS-HHHHHHHHHHHHHSTTS-HHHHHHHHHCC
T ss_pred HcCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhh
Confidence 35788888888888887 8899999988777653
No 58
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=47.66 E-value=78 Score=21.84 Aligned_cols=47 Identities=9% Similarity=0.143 Sum_probs=35.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEEeCC---eEEcCHHHHHHHHH
Q 026496 184 NKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPT---YHLYTPSEVEAVIN 235 (237)
Q Consensus 184 ~~~~s~~ea~~l~~~~l~~~~~~~~~~~~iei~ii~~~---~~~~~~~ei~~~~~ 235 (237)
...++.++..+.+++.... .....+.+.+++.+ +..-+++|+++.+.
T Consensus 17 d~~~s~e~L~~~v~~~c~~-----~~~q~ft~kw~DEEGDp~tiSS~~EL~EA~r 66 (83)
T cd06404 17 DPSISLEELCNEVRDMCRF-----HNDQPFTLKWIDEEGDPCTISSQMELEEAFR 66 (83)
T ss_pred CCCcCHHHHHHHHHHHhCC-----CCCCcEEEEEECCCCCceeecCHHHHHHHHH
Confidence 4467777776666665544 23458999999987 99999999988754
No 59
>PRK07738 flagellar protein FlaG; Provisional
Probab=46.30 E-value=84 Score=23.19 Aligned_cols=49 Identities=12% Similarity=0.119 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHhcc---cC--CCCcEEEEEEeCC----eEEcCHHHHHHHHHhC
Q 026496 189 LQEAETIALSILKQVMEE---KV--TPNNVDIARVAPT----YHLYTPSEVEAVINRL 237 (237)
Q Consensus 189 ~~ea~~l~~~~l~~~~~~---~~--~~~~iei~ii~~~----~~~~~~~ei~~~~~~~ 237 (237)
++++++-+-+.+...... .+ ..+.+-|.+++++ ++.+|++++-++++++
T Consensus 48 l~~aveklN~~l~~~~~~L~F~vdeet~~~vVkVvD~~T~EVIRQIPpEe~L~l~~~m 105 (117)
T PRK07738 48 LEEVVDGMNELLEPSQTSLKFELHEKLNEYYVQVVDERTNEVIREIPPKKLLDMYAAM 105 (117)
T ss_pred HHHHHHHHHHHHHhcCCceEEEEecCCCcEEEEEEECCCCeeeeeCCCHHHHHHHHHH
Confidence 445555555555543322 11 2456889999987 9999999998887653
No 60
>PRK08452 flagellar protein FlaG; Provisional
Probab=44.83 E-value=92 Score=23.23 Aligned_cols=28 Identities=4% Similarity=0.038 Sum_probs=22.7
Q ss_pred CCcEEEEEEeCC----eEEcCHHHHHHHHHhC
Q 026496 210 PNNVDIARVAPT----YHLYTPSEVEAVINRL 237 (237)
Q Consensus 210 ~~~iei~ii~~~----~~~~~~~ei~~~~~~~ 237 (237)
.+.+-|.+++++ ++.+|++++-++.+++
T Consensus 81 ~~~~vVkVvD~~T~eVIRqIP~Ee~L~l~~~m 112 (124)
T PRK08452 81 IKGLVVSVKEANGGKVIREIPSKEAIELMEYM 112 (124)
T ss_pred CCcEEEEEEECCCCceeeeCCCHHHHHHHHHH
Confidence 346888899877 9999999998887653
No 61
>PF11211 DUF2997: Protein of unknown function (DUF2997); InterPro: IPR021375 This family of proteins has no known function.
Probab=42.75 E-value=34 Score=20.93 Aligned_cols=32 Identities=22% Similarity=0.215 Sum_probs=26.8
Q ss_pred EEECCCCceeecceEEeCCCchhHHHHHHhhc
Q 026496 152 YYTDPSGTFWQCNAKAIGSGSEGADSSLQEQY 183 (237)
Q Consensus 152 y~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~ 183 (237)
|.|+|+|.+...--...|..+..+...|++..
T Consensus 3 ~~I~~dG~V~~~v~G~~G~~C~~~t~~lE~~L 34 (48)
T PF11211_consen 3 FTIYPDGRVEEEVEGFKGSSCLEATAALEEAL 34 (48)
T ss_pred EEECCCcEEEEEEEeccChhHHHHHHHHHHHh
Confidence 67899999988888888988888888777764
No 62
>COG3193 GlcG Uncharacterized protein, possibly involved in utilization of glycolate and propanediol [General function prediction only]
Probab=41.69 E-value=99 Score=23.62 Aligned_cols=35 Identities=20% Similarity=0.164 Sum_probs=30.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEEeCC
Q 026496 184 NKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPT 221 (237)
Q Consensus 184 ~~~~s~~ea~~l~~~~l~~~~~~~~~~~~iei~ii~~~ 221 (237)
.+.+|++.|.+++..++.++.+. +.++.+.+++.+
T Consensus 5 ~~~Ls~e~a~~ii~aA~a~a~~~---g~~VtvaVVD~~ 39 (141)
T COG3193 5 KPVLSLELANKIIAAAVAEAQQL---GVPVTVAVVDAG 39 (141)
T ss_pred ccccCHHHHHHHHHHHHHHHHHh---CCceEEEEECCC
Confidence 45789999999999999998764 678999999987
No 63
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=38.08 E-value=68 Score=27.94 Aligned_cols=47 Identities=32% Similarity=0.593 Sum_probs=29.3
Q ss_pred eeCCC-CcccchhhHHHHHhcCCcEEEEEeCCEEEEEEeccCC---------C-CCccCCcccceEEEcCc
Q 026496 14 TFSPE-GRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRIT---------S-PLLEPSSVEKIMEIDEH 73 (237)
Q Consensus 14 ~fsp~-G~~~qveya~~~~~~G~t~vgi~~~dgVvla~d~~~~---------~-~~~~~~~~~ki~~i~~~ 73 (237)
-|+|. ||-++ +||+.+||||=|..-+..- . .....-+..||-.+++|
T Consensus 230 ~wAPn~Gr~y~-------------~lAvA~kDgv~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H 287 (361)
T KOG2445|consen 230 SWAPNIGRSYH-------------LLAVATKDGVRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDH 287 (361)
T ss_pred eeccccCCcee-------------eEEEeecCcEEEEEEeeccchhhhhcccCCCCccccceEEeeeccCC
Confidence 46676 77776 8999999997776554321 1 22222344667667766
No 64
>PRK09732 hypothetical protein; Provisional
Probab=35.89 E-value=1.4e+02 Score=22.56 Aligned_cols=34 Identities=21% Similarity=0.062 Sum_probs=29.3
Q ss_pred CCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEEeCC
Q 026496 185 KDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPT 221 (237)
Q Consensus 185 ~~~s~~ea~~l~~~~l~~~~~~~~~~~~iei~ii~~~ 221 (237)
..||++.|.+++..++..+.+. +.++.|.|++..
T Consensus 5 ~~Ltl~~A~~~~~aA~~~A~~~---g~~v~iaVvD~~ 38 (134)
T PRK09732 5 VILSQQMASAIIAAGQEEAQKN---NWSVSIAVADDG 38 (134)
T ss_pred ccCCHHHHHHHHHHHHHHHHHh---CCCEEEEEEcCC
Confidence 4689999999999999999875 457999999987
No 65
>PF03646 FlaG: FlaG protein; InterPro: IPR005186 Although these proteins are known to be important for flagellar their exact function is unknown.; PDB: 2HC5_A.
Probab=34.99 E-value=59 Score=23.16 Aligned_cols=27 Identities=15% Similarity=0.233 Sum_probs=21.7
Q ss_pred CCcEEEEEEeCC----eEEcCHHHHHHHHHh
Q 026496 210 PNNVDIARVAPT----YHLYTPSEVEAVINR 236 (237)
Q Consensus 210 ~~~iei~ii~~~----~~~~~~~ei~~~~~~ 236 (237)
.+.+-|.+++++ ++.+|++++-++.++
T Consensus 65 ~~~~vVkViD~~T~eVIRqIP~Ee~l~l~~~ 95 (107)
T PF03646_consen 65 SGRVVVKVIDKETGEVIRQIPPEELLDLAKR 95 (107)
T ss_dssp TTEEEEEEEETTT-SEEEEE-HHHHHHHHHH
T ss_pred CCcEEEEEEECCCCcEEEeCCcHHHHHHHHH
Confidence 456889999987 899999999888765
No 66
>PF06787 UPF0254: Uncharacterised protein family (UPF0254); InterPro: IPR009625 This is a group of proteins of unknown function.
Probab=32.95 E-value=1.4e+02 Score=23.09 Aligned_cols=57 Identities=19% Similarity=0.260 Sum_probs=37.7
Q ss_pred CceeCCCCcccchhhHHHHHhcCCc-EEEE-----EeCCEEEEEEeccCCCCCccCCcccceEEEcCcEEEEEecchhhH
Q 026496 12 VNTFSPEGRLFQVEYAIEAIKLGST-AIGL-----KTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADA 85 (237)
Q Consensus 12 ~~~fsp~G~~~qveya~~~~~~G~t-~vgi-----~~~dgVvla~d~~~~~~~~~~~~~~ki~~i~~~i~~~~sG~~~D~ 85 (237)
.-.|+.|+.+.--...-+++++=+- =||| .++++|++++|+ +.....|...+|.
T Consensus 74 ~K~Y~ee~D~~vA~~mA~avk~~~~~dI~IgTTAGiGrGaI~I~t~~--------------------~~~~~tSdv~adL 133 (160)
T PF06787_consen 74 IKAYNEENDLEVAKLMAKAVKNKLNCDIGIGTTAGIGRGAICIVTDK--------------------NEYVFTSDVYADL 133 (160)
T ss_pred ceeecccccHHHHHHHHHHHHHHhCCCeeeecccccCCceEEEEeCC--------------------cEEEEecceehhH
Confidence 4567888877654455566655332 2555 479999999874 3456677778887
Q ss_pred HHH
Q 026496 86 RTL 88 (237)
Q Consensus 86 ~~l 88 (237)
+.-
T Consensus 134 ~~~ 136 (160)
T PF06787_consen 134 RKS 136 (160)
T ss_pred hhh
Confidence 766
No 67
>PF02609 Exonuc_VII_S: Exonuclease VII small subunit; InterPro: IPR003761 Exonuclease VII is composed of two non-identical subunits; one large subunit and 4 small ones []. This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield nucleoside 5'-phosphates.; GO: 0008855 exodeoxyribonuclease VII activity, 0006308 DNA catabolic process, 0009318 exodeoxyribonuclease VII complex; PDB: 1VP7_F.
Probab=32.12 E-value=1.1e+02 Score=18.73 Aligned_cols=31 Identities=10% Similarity=0.129 Sum_probs=22.0
Q ss_pred hHHHHHHhhcCCCCCHHHHHHHHHHHHHHHh
Q 026496 174 GADSSLQEQYNKDLTLQEAETIALSILKQVM 204 (237)
Q Consensus 174 ~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~ 204 (237)
....++++.-.+++|+++++++-.+++..+.
T Consensus 7 ~Le~Iv~~Le~~~~sLdes~~lyeeg~~l~~ 37 (53)
T PF02609_consen 7 RLEEIVEKLESGELSLDESLKLYEEGMELIK 37 (53)
T ss_dssp HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 3456677777889999999999888776543
No 68
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=30.75 E-value=62 Score=26.10 Aligned_cols=66 Identities=15% Similarity=0.154 Sum_probs=41.5
Q ss_pred CcEEEEEecchh--hH-HHHHHHHHHH--------HHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCcCCCCCcceeeE
Q 026496 72 EHIGCAMSGLIA--DA-RTLVEHARVE--------TQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLL 140 (237)
Q Consensus 72 ~~i~~~~sG~~~--D~-~~l~~~~~~~--------~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~~~~i 140 (237)
|..++-+||-.+ |. +.+.+.+.+. ...|.+. .-+|+..+..|+++++.|.+++ +.+ .++
T Consensus 2 Dt~~v~~SGDgGw~~~d~~~a~~l~~~G~~VvGvdsl~Yfw~---~rtP~~~a~Dl~~~i~~y~~~w---~~~----~vv 71 (192)
T PF06057_consen 2 DTLAVFFSGDGGWRDLDKQIAEALAKQGVPVVGVDSLRYFWS---ERTPEQTAADLARIIRHYRARW---GRK----RVV 71 (192)
T ss_pred CEEEEEEeCCCCchhhhHHHHHHHHHCCCeEEEechHHHHhh---hCCHHHHHHHHHHHHHHHHHHh---CCc----eEE
Confidence 344555555443 22 2444444442 3445443 5578999999999999999987 544 368
Q ss_pred EEEEcCC
Q 026496 141 IAGSDEN 147 (237)
Q Consensus 141 v~G~d~~ 147 (237)
++|+.-+
T Consensus 72 LiGYSFG 78 (192)
T PF06057_consen 72 LIGYSFG 78 (192)
T ss_pred EEeecCC
Confidence 8898753
No 69
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=29.83 E-value=59 Score=25.67 Aligned_cols=37 Identities=30% Similarity=0.247 Sum_probs=27.4
Q ss_pred eeCCCCcccc-hhhHHHHHhcCCcEEEEEeCCEEEEEE
Q 026496 14 TFSPEGRLFQ-VEYAIEAIKLGSTAIGLKTKEGVVLAV 50 (237)
Q Consensus 14 ~fsp~G~~~q-veya~~~~~~G~t~vgi~~~dgVvla~ 50 (237)
-+|+.|.-.. ++-..+|.++|-++||+.++||=-++.
T Consensus 115 gISTSGNS~nVl~Ai~~Ak~~gm~vI~ltG~~GG~~~~ 152 (176)
T COG0279 115 GISTSGNSKNVLKAIEAAKEKGMTVIALTGKDGGKLAG 152 (176)
T ss_pred EEeCCCCCHHHHHHHHHHHHcCCEEEEEecCCCccccc
Confidence 4688886664 444456678899999999999866654
No 70
>PRK14065 exodeoxyribonuclease VII small subunit; Provisional
Probab=27.28 E-value=1.6e+02 Score=20.36 Aligned_cols=30 Identities=7% Similarity=0.289 Sum_probs=23.7
Q ss_pred hhHHHHHHhhcCCCCCHHHHHHHHHHHHHH
Q 026496 173 EGADSSLQEQYNKDLTLQEAETIALSILKQ 202 (237)
Q Consensus 173 ~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~ 202 (237)
..+..+|++.-.+++|+++.+++=.+++..
T Consensus 32 erakeiLe~LndpeisL~eSvkLYkeG~~l 61 (86)
T PRK14065 32 HSLEQAIDRLNDPNLSLKDGMDLYKTAMQE 61 (86)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 457889999999999999999885555543
No 71
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=27.21 E-value=55 Score=24.80 Aligned_cols=31 Identities=26% Similarity=0.362 Sum_probs=26.0
Q ss_pred ceeC-CCCcccchhhHHHHHhcCCcEEEEEeC
Q 026496 13 NTFS-PEGRLFQVEYAIEAIKLGSTAIGLKTK 43 (237)
Q Consensus 13 ~~fs-p~G~~~qveya~~~~~~G~t~vgi~~~ 43 (237)
|.|| ++|...--||...|.+.|-..|||.-.
T Consensus 7 T~~s~~dg~~~~~e~v~~A~~~Gl~~i~iTDH 38 (175)
T PF02811_consen 7 TKYSILDGKDSPEEYVEQAKEKGLDAIAITDH 38 (175)
T ss_dssp -TTTSSTSSSSHHHHHHHHHHTTESEEEEEEE
T ss_pred ccCcchhhcCCHHHHHHHHHHcCCCEEEEcCC
Confidence 4577 889888888999999999999998654
No 72
>PF08289 Flu_M1_C: Influenza Matrix protein (M1) C-terminal domain; InterPro: IPR013188 Matrix protein (M1) of Influenza virus is a bifunctional membrane/RNA-binding protein that mediates the encapsidation of RNA-nucleoprotein cores into the membrane envelope. It is therefore required that M1 binds both membrane and RNA simultaneously. M1 is comprised of two domains connected by a linker sequence. The C-terminal domain contains alpha-helical structure and appears to be involved in growth and virulence of the virus [, ].; GO: 0003723 RNA binding, 0005198 structural molecule activity
Probab=26.60 E-value=1.7e+02 Score=20.14 Aligned_cols=47 Identities=19% Similarity=0.125 Sum_probs=38.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCC
Q 026496 81 LIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGD 127 (237)
Q Consensus 81 ~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~ 127 (237)
-..|++.+.+.++..+.--+-.--.+-+-..|+..|-+.++.|..+.
T Consensus 41 q~~e~~eiAsq~r~~i~amRsiGt~~~~~~Gl~dDlle~Lq~yQk~M 87 (95)
T PF08289_consen 41 QAAEAMEIASQARSMIQAMRSIGTHPKNSEGLADDLLENLQAYQKRM 87 (95)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHHHHHH
Confidence 45799999999999887777666667778889999999998887765
No 73
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=25.28 E-value=87 Score=30.77 Aligned_cols=75 Identities=15% Similarity=0.253 Sum_probs=44.9
Q ss_pred CCCCceeCCCCcccch-------hhHHHH-HhcCCcEEEEEeCCEEEEEEeccCCCCC-c--cCCcc--cceEEEcCcEE
Q 026496 9 DRGVNTFSPEGRLFQV-------EYAIEA-IKLGSTAIGLKTKEGVVLAVEKRITSPL-L--EPSSV--EKIMEIDEHIG 75 (237)
Q Consensus 9 d~~~~~fsp~G~~~qv-------eya~~~-~~~G~t~vgi~~~dgVvla~d~~~~~~~-~--~~~~~--~ki~~i~~~i~ 75 (237)
...+-+|+|.|++..+ ++|-.- .+-|..++|.+.++ ..+.-|+...++- + .+... .+--=++++.+
T Consensus 403 ~d~V~VfTPkG~~~~Lp~gaT~lDfAy~iHt~iG~~~~gAkvng-~~v~l~~~L~~GD~VeIits~~~~Ps~dWL~~~lg 481 (743)
T PRK10872 403 DDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGG-RIVPFTYQLQMGDQIEIITQKQPNPSRDWLNPNLG 481 (743)
T ss_pred CCeEEEECCCCCeEEcCCCCcHHHHHHHHhHHHHhhceEEEECC-EECCCCcCCCCCCEEEEEeCCCCCCChhHhccccC
Confidence 4457799999988764 344321 47799999999666 5555666665522 1 12211 22222556666
Q ss_pred EEEecchhh
Q 026496 76 CAMSGLIAD 84 (237)
Q Consensus 76 ~~~sG~~~D 84 (237)
+.-|+-+-.
T Consensus 482 ~v~T~rAR~ 490 (743)
T PRK10872 482 YVTTSRGRS 490 (743)
T ss_pred eeeCHHHHH
Confidence 777776643
No 74
>PF03928 DUF336: Domain of unknown function (DUF336); InterPro: IPR005624 This entry contains uncharacterised proteins, including GlcG P45504 from SWISSPROT. The alignment contains many conserved motifs that are suggestive of cofactor binding and enzymatic activity.; PDB: 2A2L_D 3FPW_A 3FPV_E.
Probab=24.53 E-value=1.4e+02 Score=22.11 Aligned_cols=33 Identities=27% Similarity=0.263 Sum_probs=24.8
Q ss_pred CCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEEeCC
Q 026496 186 DLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPT 221 (237)
Q Consensus 186 ~~s~~ea~~l~~~~l~~~~~~~~~~~~iei~ii~~~ 221 (237)
.++.++|.+++..+...+.++. .++-|.|++..
T Consensus 2 ~l~~~~A~~l~~~a~~~a~~~g---~~v~iaVvd~~ 34 (132)
T PF03928_consen 2 SLTLEDAWKLGDAAVEEARERG---LPVSIAVVDAG 34 (132)
T ss_dssp EE-HHHHHHHHHHHHHHHHHTT------EEEEEETT
T ss_pred CcCHHHHHHHHHHHHHHHHHhC---CCeEEEEEECC
Confidence 4789999999999999998762 24788888877
No 75
>PF14804 Jag_N: Jag N-terminus; PDB: 3GKU_B.
Probab=22.70 E-value=1.4e+02 Score=18.46 Aligned_cols=29 Identities=21% Similarity=0.138 Sum_probs=18.6
Q ss_pred CCHHHHHHHHHHHHHHHhcccCCCCcEEEEEEeCC
Q 026496 187 LTLQEAETIALSILKQVMEEKVTPNNVDIARVAPT 221 (237)
Q Consensus 187 ~s~~ea~~l~~~~l~~~~~~~~~~~~iei~ii~~~ 221 (237)
-|++||++.|.+-|.... ..+++.|+.+.
T Consensus 5 kt~eeAi~~A~~~l~~~~------~~~~~eVi~~g 33 (52)
T PF14804_consen 5 KTVEEAIEKALKELGVPR------EELEYEVIEEG 33 (52)
T ss_dssp SSHHHHHHHHHHHTT--G------GGEEEEEEE--
T ss_pred CCHHHHHHHHHHHhCCCh------HHEEEEEEEcC
Confidence 478898888877766543 46788887763
No 76
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=22.13 E-value=71 Score=29.36 Aligned_cols=64 Identities=22% Similarity=0.156 Sum_probs=41.7
Q ss_pred eeeEEEEEcCCCCeEEEECCCCceeecceEEeCCCchhHHHHHHhh---cCCCCCHHHHHHHHHHHHH
Q 026496 137 VSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQ---YNKDLTLQEAETIALSILK 201 (237)
Q Consensus 137 ~~~iv~G~d~~g~~ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~---~~~~~s~~ea~~l~~~~l~ 201 (237)
+-+|++|.|+++. +-.+.+.-.-.......+|.....+...|++. +...-++++|+..+.+...
T Consensus 346 v~lI~GG~~Kg~d-f~~L~~~~~~~~~~~~~~G~~~~~i~~~l~~~~~~~~~~~~le~Av~~a~~~a~ 412 (448)
T COG0771 346 VILIAGGDDKGAD-FSPLAEILAKVIKKLVLIGEDAEKIAAALKEAGPSLVICETLEEAVQLARELAQ 412 (448)
T ss_pred EEEEECCCCCCCC-hhHHHHHhhhcceEEEEeCCCHHHHHHHHHhcCCceeecCcHHHHHHHHHHhhc
Confidence 7788888887643 21111111111345789999989999999888 4556688888777665443
No 77
>COG0822 IscU NifU homolog involved in Fe-S cluster formation [Energy production and conversion]
Probab=21.12 E-value=3.2e+02 Score=20.97 Aligned_cols=54 Identities=28% Similarity=0.292 Sum_probs=41.3
Q ss_pred eEE-EECCCCceeecceEEeCCCchhHHHHHHhhcCCCCCHHHHHHHHHHHHHHHh
Q 026496 150 SLY-YTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVM 204 (237)
Q Consensus 150 ~ly-~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~ 204 (237)
.|| .+| .|.+....|-..|-+...+-+-+=-.+-.+.|++||+++.........
T Consensus 44 ~l~lkv~-~~~I~d~~F~~~GC~is~ASss~~te~v~Gkti~EAl~i~~~~~~m~~ 98 (150)
T COG0822 44 TLYLKVD-NGVIEDAKFKGFGCAISIASSSMMTELVKGKTLDEALKITEAFTDMAK 98 (150)
T ss_pred EEEEEEc-CCEEEEEEeeecCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 344 355 888889999999988777777776777789999999999855555444
No 78
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=20.78 E-value=48 Score=18.47 Aligned_cols=11 Identities=27% Similarity=0.761 Sum_probs=6.8
Q ss_pred CceeCCCCccc
Q 026496 12 VNTFSPEGRLF 22 (237)
Q Consensus 12 ~~~fsp~G~~~ 22 (237)
--.|||+|+-+
T Consensus 13 ~p~~SpDGk~i 23 (39)
T PF07676_consen 13 SPAWSPDGKYI 23 (39)
T ss_dssp EEEE-TTSSEE
T ss_pred CEEEecCCCEE
Confidence 34789999644
No 79
>PF01592 NifU_N: NifU-like N terminal domain; InterPro: IPR002871 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents the N-terminal of NifU and homologous proteins. NifU contains two domains: an N-terminal and a C-terminal domain (IPR001075 from INTERPRO) []. These domains exist either together or on different polypeptides, both domains being found in organisms that do not fix nitrogen (e.g. yeast), so they have a broader significance in the cell than nitrogen fixation. ; GO: 0005506 iron ion binding, 0051536 iron-sulfur cluster binding, 0016226 iron-sulfur cluster assembly; PDB: 3LVL_A 4EB5_C 4EB7_C 1WFZ_A 2Z7E_C 2AZH_A 1XJS_A 1Q48_A 1R9P_A 2KQK_A ....
Probab=20.14 E-value=2.8e+02 Score=20.32 Aligned_cols=58 Identities=21% Similarity=0.248 Sum_probs=39.8
Q ss_pred CCeE---EEECCC-CceeecceEEeCCCchhHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhc
Q 026496 148 GPSL---YYTDPS-GTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVME 205 (237)
Q Consensus 148 g~~l---y~vd~~-G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~ 205 (237)
|..+ ..+|.+ |.+.+..|.+.|-.--.+-+-+=-.+-.+.+++||.++..+-+.....
T Consensus 35 GD~i~i~l~i~~~~~~I~d~~f~~~GC~~~~Asas~~~~~i~gk~l~ea~~i~~~~i~~~l~ 96 (126)
T PF01592_consen 35 GDEIRIYLKIDDDGGRIKDAKFQGFGCAISIASASMMCELIKGKTLEEALKITAEDIEEALG 96 (126)
T ss_dssp TEEEEEEEEESSSTSBEEEEEEEEESSHHHHHHHHHHHHHHTTSBHHHHHCHHHHHHHHHHT
T ss_pred CCEEEEEEEEecCCCeEEEEEEEeecChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence 5444 567887 889899999998765444443333444678899998887666655544
Done!