Query 026496
Match_columns 237
No_of_seqs 128 out of 1094
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 14:57:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026496.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026496hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1yar_A Proteasome alpha subuni 100.0 3.1E-64 1.1E-68 417.6 27.7 231 1-234 1-233 (233)
2 1j2p_A Alpha-ring, proteasome 100.0 1.2E-63 4E-68 417.2 29.9 232 1-236 1-235 (246)
3 1iru_E 20S proteasome; cell cy 100.0 6.4E-64 2.2E-68 417.7 28.0 234 1-237 1-241 (241)
4 1iru_B 20S proteasome; cell cy 100.0 1.5E-63 5E-68 413.6 29.4 230 5-237 2-232 (233)
5 1ryp_A 20S proteasome; multica 100.0 2.8E-63 9.6E-68 414.2 26.8 229 6-237 1-239 (243)
6 1iru_A 20S proteasome; cell cy 100.0 1E-62 3.6E-67 411.5 28.7 234 1-237 1-242 (246)
7 3h4p_A Proteasome subunit alph 100.0 1.5E-63 5.1E-68 419.7 22.4 231 3-237 7-240 (264)
8 3nzj_F Proteasome component C1 100.0 1.2E-61 4E-66 411.8 29.5 231 1-234 1-240 (288)
9 1ryp_C 20S proteasome; multica 100.0 1.2E-61 4.2E-66 404.6 29.1 228 7-237 4-241 (244)
10 1iru_F 20S proteasome; cell cy 100.0 5.9E-62 2E-66 410.2 26.2 228 5-237 3-236 (263)
11 1ryp_D 20S proteasome; multica 100.0 4.6E-61 1.6E-65 400.4 30.1 225 7-236 1-233 (241)
12 1iru_G 20S proteasome; cell cy 100.0 2.1E-61 7.2E-66 405.2 28.1 232 2-236 1-238 (254)
13 1ryp_B 20S proteasome; multica 100.0 1.1E-60 3.8E-65 400.1 30.0 229 6-237 3-250 (250)
14 1iru_C 20S proteasome; cell cy 100.0 7E-61 2.4E-65 403.5 28.5 228 6-236 3-239 (261)
15 1iru_D 20S proteasome; cell cy 100.0 3.2E-61 1.1E-65 402.8 25.7 225 8-237 3-232 (248)
16 1ryp_F 20S proteasome; multica 100.0 1.6E-61 5.5E-66 401.3 21.9 225 5-234 2-233 (233)
17 1ryp_E 20S proteasome; multica 100.0 1E-60 3.6E-65 398.5 26.9 225 9-236 1-234 (242)
18 1ryp_G 20S proteasome; multica 100.0 5.5E-60 1.9E-64 394.4 29.5 227 5-234 1-235 (244)
19 1q5q_A Proteasome alpha-type s 100.0 3.7E-51 1.3E-55 343.6 21.4 212 13-236 5-234 (259)
20 3mi0_A Proteasome subunit alph 100.0 5.3E-50 1.8E-54 333.9 24.0 209 16-236 8-236 (248)
21 1yar_H Proteasome beta subunit 100.0 1.8E-47 6.1E-52 313.7 24.8 200 29-236 3-206 (217)
22 3h4p_a Proteasome subunit beta 100.0 2E-47 6.7E-52 313.8 23.1 197 34-237 1-202 (219)
23 1j2q_H Proteasome beta subunit 100.0 8.2E-47 2.8E-51 306.5 25.0 196 35-237 1-200 (202)
24 3nzj_K Proteasome component PR 100.0 1.3E-46 4.6E-51 319.2 21.6 214 16-236 51-274 (287)
25 2jay_A Proteasome; hydrolase; 100.0 2.3E-46 7.9E-51 318.5 23.0 227 6-237 23-274 (291)
26 1q5r_H Proteasome beta-type su 100.0 5.7E-46 1.9E-50 316.3 22.3 207 27-237 58-282 (294)
27 1iru_N 20S proteasome; cell cy 100.0 6E-47 2.1E-51 311.0 15.6 200 28-232 2-207 (219)
28 1iru_L 20S proteasome; cell cy 100.0 7.7E-46 2.6E-50 301.2 21.5 195 35-236 1-198 (204)
29 1ryp_L 20S proteasome; multica 100.0 3.4E-45 1.2E-49 299.1 21.8 195 35-236 1-199 (212)
30 1q5q_H Proteasome beta-type su 100.0 8.4E-45 2.9E-49 301.1 22.7 198 35-236 1-216 (235)
31 1ryp_N 20S proteasome; multica 100.0 2.7E-46 9.1E-51 309.8 13.5 201 28-233 2-217 (233)
32 1iru_H 20S proteasome; cell cy 100.0 6.4E-45 2.2E-49 296.0 20.0 193 35-235 1-199 (205)
33 3nzj_H Proteasome component PU 100.0 4E-44 1.4E-48 300.5 23.2 192 27-226 22-217 (261)
34 1g0u_M Proteasome component PR 100.0 1.2E-45 4E-50 311.4 12.6 205 24-233 31-250 (266)
35 1ryp_K 20S proteasome; multica 100.0 8.4E-44 2.9E-48 287.9 22.8 188 35-227 2-194 (198)
36 3unf_H Proteasome subunit beta 100.0 2.8E-44 9.6E-49 297.3 20.2 189 35-231 1-192 (234)
37 1iru_M 20S proteasome; cell cy 100.0 1.3E-43 4.3E-48 290.0 23.6 184 31-221 6-201 (213)
38 1ryp_H 20S proteasome; multica 100.0 6.5E-44 2.2E-48 290.1 21.6 185 28-221 3-190 (205)
39 1ryp_M 20S proteasome; multica 100.0 4.6E-43 1.6E-47 288.4 23.2 184 31-221 6-210 (222)
40 1iru_J 20S proteasome; cell cy 100.0 8.9E-43 3E-47 283.4 23.0 184 31-221 5-193 (205)
41 1ryp_J 20S proteasome; multica 100.0 2E-42 6.8E-47 281.1 24.2 183 31-221 5-192 (204)
42 1iru_K 20S proteasome; cell cy 100.0 2.3E-42 8E-47 280.1 22.5 187 35-226 2-192 (201)
43 3unf_N Proteasome subunit beta 100.0 2.6E-43 8.7E-48 285.3 16.7 191 35-235 1-198 (199)
44 1ryp_I 20S proteasome; multica 100.0 6.2E-42 2.1E-46 281.6 23.2 184 35-226 1-188 (222)
45 1iru_I 20S proteasome; cell cy 100.0 7E-42 2.4E-46 283.3 23.6 186 35-228 1-189 (234)
46 2z3b_A ATP-dependent protease 100.0 7.1E-36 2.4E-40 237.9 17.6 169 32-219 3-180 (180)
47 1m4y_A ATP-dependent protease 100.0 3.9E-35 1.3E-39 231.8 17.7 165 35-218 1-171 (171)
48 1g3k_A ATP-dependent protease 100.0 1.3E-34 4.4E-39 229.5 17.2 166 35-219 1-173 (174)
49 2hc5_A ORF 99, hypothetical pr 46.8 24 0.00083 25.0 4.1 27 210-236 66-96 (117)
50 1vd2_A Protein kinase C, IOTA 42.4 32 0.0011 23.0 4.0 48 183-235 22-72 (89)
51 3jx9_A Putative phosphoheptose 37.3 20 0.00067 27.2 2.5 31 12-42 81-112 (170)
52 4eo3_A Bacterioferritin comigr 35.0 27 0.00092 29.1 3.3 71 149-220 103-193 (322)
53 2yxo_A Histidinol phosphatase; 30.7 31 0.0011 27.2 2.9 32 13-44 8-39 (267)
54 3jtz_A Integrase; four strande 25.6 83 0.0028 20.7 3.8 50 151-205 27-77 (88)
55 3fpw_A HBPS, extracellular HAE 20.5 2.2E+02 0.0076 21.8 5.9 35 184-221 62-96 (192)
No 1
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A
Probab=100.00 E-value=3.1e-64 Score=417.58 Aligned_cols=231 Identities=40% Similarity=0.660 Sum_probs=213.3
Q ss_pred CCCCCCCCCCCCceeCCCCcccchhhHHHHHhcCCcEEEEEeCCEEEEEEeccCCCCCccCCcccceEEEcCcEEEEEec
Q 026496 1 MFLTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSG 80 (237)
Q Consensus 1 ~~~~~~~yd~~~~~fsp~G~~~qveya~~~~~~G~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~ki~~i~~~i~~~~sG 80 (237)
|+|.+++||+++|+|||||||+|||||++|+++|+|+|||+++||||||+|+|.+++++.+++.+||++|+++++++++|
T Consensus 1 ~~m~~~~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~~~~~~~~~Ki~~i~~~i~~~~aG 80 (233)
T 1yar_A 1 MQQGQMAYSRAITVFSPDGRLFQVEYAREAVKKGSTALGMKFANGVLLISDKKVRSRLIEQNSIEKIQLIDDYVAAVTSG 80 (233)
T ss_dssp ------------CCCCTTSCCHHHHHHHHHHTTSCCEEEEEETTEEEEEECCCCCCTTBCSTTCCSEEEEETTEEEEEEE
T ss_pred CCcccccCCCCCceECcCCeeHHHHhHHHHHhcCCcEEEEEECCEEEEEEeccCCcccccccccCeEEEecCCEEEEEee
Confidence 78889999999999999999999999999999999999999999999999999999888888899999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCcCCCCCcceeeEEEEEcCCCCeEEEECCCCce
Q 026496 81 LIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTF 160 (237)
Q Consensus 81 ~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~~~~iv~G~d~~g~~ly~vd~~G~~ 160 (237)
..+|++.|.++++.+++.|+++++++++++.+++.++++++.|+++. +.|||++++||||||++||+||.+||+|++
T Consensus 81 ~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~~~~~~~~~---~~rp~~v~~lvaG~D~~gp~Ly~id~~G~~ 157 (233)
T 1yar_A 81 LVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYG---GVRPYGVSLIFAGIDQIGPRLFDCDPAGTI 157 (233)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTBT---TBCCCCEEEEEEEECSSCEEEEEECTTCCE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCcC---CcCcceEEEEEEEEeCCCCEEEEECCCCCE
Confidence 99999999999999999999999999999999999999999999988 899999999999999989999999999999
Q ss_pred eecceEEeCCCchhHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEEeCC--eEEcCHHHHHHHH
Q 026496 161 WQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPT--YHLYTPSEVEAVI 234 (237)
Q Consensus 161 ~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~~~~~~~iei~ii~~~--~~~~~~~ei~~~~ 234 (237)
.+++++++|+|++.++++||+.|+++||++||++++++||..+.++++++++++|++|+++ +++++++||+++|
T Consensus 158 ~~~~~~aiG~gs~~a~~~Le~~~~~~~s~eea~~la~~al~~~~~~d~s~~~i~v~vi~~~~~~~~~~~~ei~~~l 233 (233)
T 1yar_A 158 NEYKATAIGSGKDAVVSFLEREYKENLPEKEAVTLGIKALKSSLEEGEELKAPEIASITVGNKYRIYDQEEVKKFL 233 (233)
T ss_dssp EEBSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHTSCSSCCCCCCEEEEEETTSCCEECCHHHHHTTC
T ss_pred EeeeEEEEcCCcHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCEEECCHHHHHhhC
Confidence 9999999999999999999999999999999999999999999999888889999999998 9999999998764
No 2
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*
Probab=100.00 E-value=1.2e-63 Score=417.20 Aligned_cols=232 Identities=44% Similarity=0.756 Sum_probs=221.7
Q ss_pred CCCCCCCCCCCCceeCCCCcccchhhHHHHHhcCCcEEEEEeCCEEEEEEeccCCCCCccCCcccceEEEcCcEEEEEec
Q 026496 1 MFLTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSG 80 (237)
Q Consensus 1 ~~~~~~~yd~~~~~fsp~G~~~qveya~~~~~~G~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~ki~~i~~~i~~~~sG 80 (237)
|||++++||+++|+|||||||+|||||++|+++|+|+|||+++||||||+|+|.+++++.+++.+||++|+++++++++|
T Consensus 1 ~~~~~~~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~KI~~i~~~i~~~~aG 80 (246)
T 1j2p_A 1 MHLPQMGYDRAITVFSPDGRLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLLEKDTIEKIYKIDEHICAATSG 80 (246)
T ss_dssp ---CCTTSSSCTTCCCTTSCCHHHHHHHHHHHTSCCEEEEEETTEEEEEEECCCSCTTBCGGGCCSEEECSSSEEEEEEE
T ss_pred CCccccCcCCCCceECCCCeehHHHhHHHHHHcCCcEEEEEECCEEEEEEeccCCccccccCccCcEEEECCCEEEEEeE
Confidence 89999999999999999999999999999999999999999999999999999999887788899999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCcCCCCCcceeeEEEEEcCCCCeEEEECCCCce
Q 026496 81 LIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTF 160 (237)
Q Consensus 81 ~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~~~~iv~G~d~~g~~ly~vd~~G~~ 160 (237)
..+|++.|.++++.+++.|++.++++++++.+++.+++.+|.|+++. +.|||++++||||+| +||+||.+||+|++
T Consensus 81 ~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~y~~~~---~~rp~~v~~lvaG~D-~gp~Ly~idp~G~~ 156 (246)
T 1j2p_A 81 LVADARVLIDRARIEAQINRLTYDIPITVKELAKKICDFKQQYTQYG---GVRPFGVSLLIAGVN-EVPKLYETDPSGAL 156 (246)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHTTSBT---TBCCCCEEEEEEEES-SSEEEEEECTTCCE
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccc---CcccccEEEEEEEEC-CCCEEEEECCCceE
Confidence 99999999999999999999999999999999999999999999998 899999999999999 89999999999999
Q ss_pred eecceEEeCCCchhHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEEe-CC--eEEcCHHHHHHHHHh
Q 026496 161 WQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVA-PT--YHLYTPSEVEAVINR 236 (237)
Q Consensus 161 ~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~~~~~~~iei~ii~-~~--~~~~~~~ei~~~~~~ 236 (237)
.+++++|+|+|++.++++||+.|+++||++||++++++||..+.++..++++++|++|+ ++ +++++++|+++++++
T Consensus 157 ~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~~sg~~i~v~vi~~~~~~~~~l~~~ei~~~~~~ 235 (246)
T 1j2p_A 157 LEYKATAIGMGRMAVTEFFEKEYRDDLSFDDAMVLGLVAMGLSIESELVPENIEVGYVKVDDRTFKEVSPEELKPYVER 235 (246)
T ss_dssp EEBSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHTSCCCGGGEEEEEEETTTCCCEECCHHHHHHHHHH
T ss_pred EeeeEEEECCCcHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhccCCCCcEEEEEEEcCCCceEECCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999985578899999999 64 999999999999875
No 3
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D
Probab=100.00 E-value=6.4e-64 Score=417.66 Aligned_cols=234 Identities=71% Similarity=1.081 Sum_probs=219.6
Q ss_pred CCCCCCCCCCCCceeCCCCcccchhhHHHHHhcCCcEEEEEeCCEEEEEEeccCCCCCccCCcccceEEEcCcEEEEEec
Q 026496 1 MFLTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSG 80 (237)
Q Consensus 1 ~~~~~~~yd~~~~~fsp~G~~~qveya~~~~~~G~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~ki~~i~~~i~~~~sG 80 (237)
|||.+++||+++|+|||||||+|||||++|+++|+|+|||+++||||||+|+|.++++..+++.+||++|+++++++++|
T Consensus 1 ~~m~~~~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~Ki~~i~~~i~~~~aG 80 (241)
T 1iru_E 1 MFLTRSEYDRGVNTFSPEGRLFQVEYDIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKIVEIDAHIGCAMSG 80 (241)
T ss_dssp -------CCCCTTCBCTTSCBHHHHHHHHHHTTSCCEEEEEETTEEEEEEECCCCCTTBCTTSCCSEEEEETTEEEEEEE
T ss_pred CCCccCCCCCCCceECCCCccHHHHHHHHHHHcCCcEEEEEcCCEEEEEEecccCCcCcCccccceEEEEcCCEEEEEee
Confidence 88889999999999999999999999999999999999999999999999999999776688899999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCcCC-----CCCcceeeEEEEEcCCCCeEEEEC
Q 026496 81 LIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESM-----SRPFGVSLLIAGSDENGPSLYYTD 155 (237)
Q Consensus 81 ~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~-----~rP~~~~~iv~G~d~~g~~ly~vd 155 (237)
..+|++.|.++++.+++.|+++++++++++.+++.+++++|.|+++. + .|||++++||||||++||+||.+|
T Consensus 81 ~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~~~~y~~~~---~~~~l~~rp~~v~~lvaG~D~~gp~Ly~id 157 (241)
T 1iru_E 81 LIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEED---ADPGAMSRPFGVALLFGGVDEKGPQLFHMD 157 (241)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHTTTTCBCSTT---CCSSCBSSCCCEEEEEEEEETTEEEEEEEC
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccc---cccccccccceEEEEEEEEeCCCCEEEEEC
Confidence 99999999999999999999999999999999999999999999987 7 899999999999998899999999
Q ss_pred CCCceeecceEEeCCCchhHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEEeCC--eEEcCHHHHHHH
Q 026496 156 PSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPT--YHLYTPSEVEAV 233 (237)
Q Consensus 156 ~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~~~~~~~iei~ii~~~--~~~~~~~ei~~~ 233 (237)
|+|++.+++++|+|+|++.++++||+.|+++||++||++++++||..+.++..++++++|++|+++ +++++++|++++
T Consensus 158 p~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~~sg~~i~v~vi~~~~~~~~l~~~ei~~~ 237 (241)
T 1iru_E 158 PSGTFVQCDARAIGSASEGAQSSLQELYHKSMTLKEAIKSSLIILKQVMEEKLNATNIELATVQPGQNFHMFTKEELEEV 237 (241)
T ss_dssp TTSCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCSSCCCTTSEEEEEECSSSCCEECCHHHHHHH
T ss_pred CCCcEEecceEEECCCcHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhccCCCCCEEEEEEECCCCeEECCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998667889999999998 899999999999
Q ss_pred HHhC
Q 026496 234 INRL 237 (237)
Q Consensus 234 ~~~~ 237 (237)
++++
T Consensus 238 ~~~~ 241 (241)
T 1iru_E 238 IKDI 241 (241)
T ss_dssp HTTC
T ss_pred HHhC
Confidence 9865
No 4
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Probab=100.00 E-value=1.5e-63 Score=413.57 Aligned_cols=230 Identities=35% Similarity=0.593 Sum_probs=223.8
Q ss_pred CCCCCCCCceeCCCCcccchhhHHHHHhcCCcEEEEEeCCEEEEEEeccCCCCCccCCcccceEEEcCcEEEEEecchhh
Q 026496 5 RTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIAD 84 (237)
Q Consensus 5 ~~~yd~~~~~fsp~G~~~qveya~~~~~~G~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~ki~~i~~~i~~~~sG~~~D 84 (237)
+++||+++|+|||||||+|||||++|+++|+|+|||+++||||||+|+|.+.+++.+++.+||++|+++++++++|..+|
T Consensus 2 ~~~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD 81 (233)
T 1iru_B 2 ERGYSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDERSVHKVEPITKHIGLVYSGMGPD 81 (233)
T ss_dssp CCCCCSBSCCCCTTSCCHHHHHHHHHHHTSCCEEEEECSSCEEEEEECCCCCSSBCSTTCCSSEESSSSEEEEEEECHHH
T ss_pred CCCccCCceeECCCCeEehhHhHHHHHHcCCcEEEEEeCCEEEEEEEecCCccccccccCCeEEEECCCEEEEEEEccHH
Confidence 67899999999999999999999999999999999999999999999999988888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCcCCCCCcceeeEEEEEcCCCCeEEEECCCCceeecc
Q 026496 85 ARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCN 164 (237)
Q Consensus 85 ~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~~~~iv~G~d~~g~~ly~vd~~G~~~~~~ 164 (237)
++.|.++++.+++.|+++++++++++.+++++++.+|.|+++. +.|||++++||||||++||+||.+||+|++.+++
T Consensus 82 ~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~y~~~~---~~rP~~v~~lvaG~D~~gp~Ly~id~~G~~~~~~ 158 (233)
T 1iru_B 82 YRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSG---GVRPFGVSLLICGWNEGRPYLFQSDPSGAYFAWK 158 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTSB---TBCCCSEEEEEEEECSSSEEEEEECTTSCEEEBS
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCcC---CCCCcEEEEEEEEEeCCCCeEEEECCCCCEEEee
Confidence 9999999999999999999999999999999999999999998 8999999999999998899999999999999999
Q ss_pred eEEeCCCchhHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEEeCC-eEEcCHHHHHHHHHhC
Q 026496 165 AKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPT-YHLYTPSEVEAVINRL 237 (237)
Q Consensus 165 ~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~~~~~~~iei~ii~~~-~~~~~~~ei~~~~~~~ 237 (237)
++++|+|++.++++||++|+++||++||++++++||..+.+++.++++++|++|+++ +++++++|++++++++
T Consensus 159 ~~aiG~gs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~d~sg~~i~v~vi~~~g~~~l~~~ei~~~~~~~ 232 (233)
T 1iru_B 159 ATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEGQMTEDNIEVGICNEAGFRRLTPTEVKDYLAAI 232 (233)
T ss_dssp EEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHTTCCSCCCSSSEEEEEEETTEEEECCHHHHHHHHTTC
T ss_pred EEEECCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhccCCCCCEEEEEEECCCEEECCHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999887889999999999 9999999999999865
No 5
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Probab=100.00 E-value=2.8e-63 Score=414.24 Aligned_cols=229 Identities=27% Similarity=0.527 Sum_probs=221.7
Q ss_pred CCCCCCCceeCCCCcccchhhHHHHHhc-CCcEEEEEeCCEEEEEEeccCCCCCccCCcccceEEEcCcEEEEEecchhh
Q 026496 6 TEYDRGVNTFSPEGRLFQVEYAIEAIKL-GSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIAD 84 (237)
Q Consensus 6 ~~yd~~~~~fsp~G~~~qveya~~~~~~-G~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~ki~~i~~~i~~~~sG~~~D 84 (237)
++||+++|+|||||||+|||||++|+++ |+|+|||+++||||||+|+|.+.+++.+++.+||++|+++++|+++|..+|
T Consensus 1 ~~yd~~~t~fsp~Grl~QvEYA~~av~~~Gtt~vgi~~~dgVvlaad~r~~~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD 80 (243)
T 1ryp_A 1 AGYDRHITIFSPEGRLYQVEYAFKATNQTNINSLAVRGKDCTVVISQKKVPDKLLDPTTVSYIFCISRTIGMVVNGPIPD 80 (243)
T ss_dssp CGGGGTSSSCCTTSCCHHHHHHHHHTTTTCCCEEEEECSSEEEEEEECCCCCTTBCGGGCCSEEECSSSCEEEEESCHHH
T ss_pred CCCCCCCceECCCCeeHHHHHHHHHHhcCCCcEEEEEeCCEEEEEEEecCCccccCCCcCCceEEECCCEEEEEEecHHH
Confidence 4799999999999999999999999999 999999999999999999999988888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCcCCCCCcceeeEEEEEcC-CCCeEEEECCCCceeec
Q 026496 85 ARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDE-NGPSLYYTDPSGTFWQC 163 (237)
Q Consensus 85 ~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~~~~iv~G~d~-~g~~ly~vd~~G~~~~~ 163 (237)
++.|.++++.+++.|++.++++++++.+++++++++|.|++++ +.|||++++||||||+ +||+||.+||+|++.++
T Consensus 81 ~~~l~~~~r~~~~~~~~~~~~~~~v~~la~~l~~~l~~y~~~~---~~rP~~v~~lvaG~D~~~gp~Ly~~dp~G~~~~~ 157 (243)
T 1ryp_A 81 ARNAALRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQRA---YMRPLGVILTFVSVDEELGPSIYKTDPAGYYVGY 157 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBT---TSCCCSCEEEEEEEETTTEEEEEEECTTSCEEEB
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccC---CccccceEEEEEEEcCCCCcEEEEEcCCCCEEEE
Confidence 9999999999999999999999999999999999999999998 8999999999999997 78999999999999999
Q ss_pred ceEEeCCCchhHHHHHHhhcCC-------CCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEEeCC-eEEcCHHHHHHHHH
Q 026496 164 NAKAIGSGSEGADSSLQEQYNK-------DLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPT-YHLYTPSEVEAVIN 235 (237)
Q Consensus 164 ~~~a~G~g~~~~~~~Le~~~~~-------~~s~~ea~~l~~~~l~~~~~~~~~~~~iei~ii~~~-~~~~~~~ei~~~~~ 235 (237)
+++++|++++.++++||+.|++ +|+++||++++++||..+.+++.++++++|++|+++ +++++++|++++++
T Consensus 158 ~~~a~G~gs~~a~~~Le~~~~~~~~~~~~~ms~eea~~l~~~al~~~~~rd~s~~~iev~vi~~~g~~~l~~~ei~~~~~ 237 (243)
T 1ryp_A 158 KATATGPKQQEITTNLENHFKKSKIDHINEESWEKVVEFAITHMIDALGTEFSKNDLEVGVATKDKFFTLSAENIEERLV 237 (243)
T ss_dssp SEEEESTTHHHHHHHHHHHHHHHCSSSCCCSSHHHHHHHHHHHHHHHHTCCCCTTSEEEEEEETTEEEECCHHHHHHHHH
T ss_pred EEEEECCCcHHHHHHHHHHhhhcccccccCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEEECCCeEECCHHHHHHHHH
Confidence 9999999999999999999999 999999999999999999999888889999999999 99999999999987
Q ss_pred hC
Q 026496 236 RL 237 (237)
Q Consensus 236 ~~ 237 (237)
++
T Consensus 238 ~~ 239 (243)
T 1ryp_A 238 AI 239 (243)
T ss_dssp HH
T ss_pred Hh
Confidence 63
No 6
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G
Probab=100.00 E-value=1e-62 Score=411.51 Aligned_cols=234 Identities=32% Similarity=0.612 Sum_probs=224.0
Q ss_pred CCCCC-CCCCCCCceeCCCCcccchhhHHHHHhc-CCcEEEEEeCCEEEEEEeccCCCCCccCCcccceEEEcCcEEEEE
Q 026496 1 MFLTR-TEYDRGVNTFSPEGRLFQVEYAIEAIKL-GSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAM 78 (237)
Q Consensus 1 ~~~~~-~~yd~~~~~fsp~G~~~qveya~~~~~~-G~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~ki~~i~~~i~~~~ 78 (237)
|||.+ ++||+++|+|||||||+|||||++|+++ |+|+|||+++||||||+|+|.+.+++.+++.+||++|++++++++
T Consensus 1 ~~m~~~~~yd~~~t~fsp~Grl~QvEya~~av~~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~Ki~~i~~~i~~~~ 80 (246)
T 1iru_A 1 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKITENIGCVM 80 (246)
T ss_dssp -CCSCCCTTTTTSSCCCTTSCCHHHHHHHHHHHTTCCEEEEEECSSEEEEEEECCCCCSSBCGGGCCSEEESSSSCEEEE
T ss_pred CCCCccCCcCCCCccCCCCCeehHHHHHHHHHhcCCCCEEEEEeCCEEEEEEeecCCCcccCCCccCceEEECCCEEEEE
Confidence 77665 7899999999999999999999999999 999999999999999999999988888889999999999999999
Q ss_pred ecchhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCcCCCCCcceeeEEEEEcC-CCCeEEEECCC
Q 026496 79 SGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDE-NGPSLYYTDPS 157 (237)
Q Consensus 79 sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~~~~iv~G~d~-~g~~ly~vd~~ 157 (237)
+|..+|++.|.++++.+++.|+++++++++++.+++.+++++|.|+++. +.|||++++||||||+ +||+||.+||+
T Consensus 81 aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~y~~~~---~~rp~~v~~lvaG~D~~~gp~Ly~idp~ 157 (246)
T 1iru_A 81 TGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNA---EMRPLGCCMILIGIDEEQGPQVYKCDPA 157 (246)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBS---SBCCCSEEEEEEEEETTTEEEEEEECTT
T ss_pred eccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcCC---CCCCcceEEEEEEEeCCCCeEEEEEcCC
Confidence 9999999999999999999999999999999999999999999999987 8999999999999997 78999999999
Q ss_pred CceeecceEEeCCCchhHHHHHHhhcCC--CCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEEeCC---eEEcCHHHHHH
Q 026496 158 GTFWQCNAKAIGSGSEGADSSLQEQYNK--DLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPT---YHLYTPSEVEA 232 (237)
Q Consensus 158 G~~~~~~~~a~G~g~~~~~~~Le~~~~~--~~s~~ea~~l~~~~l~~~~~~~~~~~~iei~ii~~~---~~~~~~~ei~~ 232 (237)
|++.+++++++|+|++.++++||+.|++ +|+++||++++++||..+.+++.++++++|++|+++ +++++++|+++
T Consensus 158 G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~ms~eea~~la~~al~~~~~rd~sg~~i~v~vi~~~g~~~~~l~~~ei~~ 237 (246)
T 1iru_A 158 GYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILTEAEIDA 237 (246)
T ss_dssp SCEEEBSEEEEETTHHHHHHHHHHHTTSCCCCCHHHHHHHHHHHHHHHTTCCCCTTSEEEEEEETTEEEEEECCHHHHHH
T ss_pred eeEEEeeEEEECCCcHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEEECCCCeEEECCHHHHHH
Confidence 9999999999999999999999999999 999999999999999999999877889999999998 79999999999
Q ss_pred HHHhC
Q 026496 233 VINRL 237 (237)
Q Consensus 233 ~~~~~ 237 (237)
+++++
T Consensus 238 ~~~~~ 242 (246)
T 1iru_A 238 HLVAL 242 (246)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 98753
No 7
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=1.5e-63 Score=419.74 Aligned_cols=231 Identities=44% Similarity=0.756 Sum_probs=215.4
Q ss_pred CCCCCCCCCCceeCCCCcccchhhHHHHHhcCCcEEEEEeCCEEEEEEeccCCCCCccCCcccceEEEcCcEEEEEecch
Q 026496 3 LTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLI 82 (237)
Q Consensus 3 ~~~~~yd~~~~~fsp~G~~~qveya~~~~~~G~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~ki~~i~~~i~~~~sG~~ 82 (237)
+.+++||+++|+|||||||+|||||++|+++|+|+|||+++||||||+|+|.+++++.+++.+||++|+++++|+++|..
T Consensus 7 ~~~~~yd~~~t~fSp~Grl~QvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r~~~~li~~~~~~KI~~i~d~i~~~~aG~~ 86 (264)
T 3h4p_A 7 VPPSAYDRAITVFSPEGRLYQVEYAREAVRRGTTAIGIACKDGVVLAVDRRITSKLVKIRSIEKIFQIDDHVAAATSGLV 86 (264)
T ss_dssp ---------CCCCCSSSSCHHHHHHHHHHHHSCCEEEECCSSEEEEEEECCCCSTTBCTTTCCCEEEEETTEEEEEEECS
T ss_pred CCccccCCCcceECCCCeeHHHHhHHHHHhcCCcEEEEEECCEEEEEEecCccCCccccCccccEEEecCcEEEEeccch
Confidence 34688999999999999999999999999999999999999999999999999988888899999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCcCCCCCcceeeEEEEEcCCCCeEEEECCCCceee
Q 026496 83 ADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQ 162 (237)
Q Consensus 83 ~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~~~~iv~G~d~~g~~ly~vd~~G~~~~ 162 (237)
+|++.|.++++.+++.|++.++++++++.+++.|++++|.|+++. ++|||++++||||||++||+||.+||+|++.+
T Consensus 87 aD~~~l~~~~r~~~~~y~~~~~~~i~v~~la~~l~~~~~~yt~~~---~~rP~~v~~lvaG~D~~gp~Ly~iDp~G~~~~ 163 (264)
T 3h4p_A 87 ADARVLIDRARLEAQIYRLTYGEEISIEMLAKKICDIKQAYTQHG---GVRPFGVSLLIAGIDKNEARLFETDPSGALIE 163 (264)
T ss_dssp HHHHHHHTTHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHTTSBS---SCCCCSEEEEEEEEETTEEEEEEECTTCCCEE
T ss_pred HHHHHHHHHHHHHHHhhHHhcCCCCCHHHHHHHHHHHHHHHhhcc---CCCCeeEEEEEEEEeCCcCEEEEECCCceEEe
Confidence 999999999999999999999999999999999999999999988 89999999999999998999999999999999
Q ss_pred cceEEeCCCchhHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEEeCC---eEEcCHHHHHHHHHhC
Q 026496 163 CNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPT---YHLYTPSEVEAVINRL 237 (237)
Q Consensus 163 ~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~~~~~~~iei~ii~~~---~~~~~~~ei~~~~~~~ 237 (237)
++++|+|+|++.++++||+.|+++|+++||++++++||..+.++ .++++++|++|+++ |++++++||+++++++
T Consensus 164 ~~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~a~~~-~sg~~iev~vi~~~~~~~~~l~~~ei~~~~~~~ 240 (264)
T 3h4p_A 164 YKATAIGSGRPVVMELLEKEYRDDITLDEGLELAITALTKANED-IKPENVDVCIITVKDAQFKKIPVEEIKKLIEKV 240 (264)
T ss_dssp ESEEEESTTHHHHTTTHHHHCCTTCCSHHHHHHHHHHHHHHSSS-CCTTSEEEEEEETTTTEEEECCTTTTGGGTTTT
T ss_pred cCeEEECCCHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhc-cCCCeEEEEEEEeCCCcEEECCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988 78889999999975 9999999999988654
No 8
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*
Probab=100.00 E-value=1.2e-61 Score=411.84 Aligned_cols=231 Identities=36% Similarity=0.571 Sum_probs=217.1
Q ss_pred CCCCCCCCCCCCceeCCCCcccchhhHHHHHhcCCcEEEEEeCCEEEEEEeccCCCCCccCCcccceEEEcCcEEEEEec
Q 026496 1 MFLTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSG 80 (237)
Q Consensus 1 ~~~~~~~yd~~~~~fsp~G~~~qveya~~~~~~G~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~ki~~i~~~i~~~~sG 80 (237)
|++++++||+++|+|||+||++|||||++|+++|+|+|||+++||||||+|+|.+++++..+..+||++|+++++|+++|
T Consensus 1 m~~~~~~yd~~~t~fSP~Grl~QvEYA~kAv~~GtT~Vgik~kdGVVlAaD~r~t~gl~~~~~~~KI~~I~d~i~~~~aG 80 (288)
T 3nzj_F 1 MTSIGTGYDLSNSVFSPDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNVKIQVVDRHIGCVYSG 80 (288)
T ss_dssp ----CCCTTSSTTCCCTTSCCHHHHHHHHHHHTSCCEEEEEETTEEEEEEEEEECCTTBCTTCSCCCEEETTTEEEEEEE
T ss_pred CCCCcCCccCCcccCCCCCchHHHHHHHHHHhcCCcEEEEEECCEEEEEEcCCcccCCccccccceEEEEcCCEEEEecC
Confidence 89999999999999999999999999999999999999999999999999999999877666789999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCcCCCCCcceeeEEEEEcCCCCeEEEECCCCce
Q 026496 81 LIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTF 160 (237)
Q Consensus 81 ~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~~~~iv~G~d~~g~~ly~vd~~G~~ 160 (237)
+.+|++.|+++++.+++.|++.++++++++.++++|++++|.|+++. +.|||+|++||||||++||+||++||+|++
T Consensus 81 ~~aD~~~l~~~lr~e~~~y~~~~~~~i~v~~lA~~l~~~l~~yt~~~---~~rP~gv~~lvaG~D~~Gp~Ly~iDp~G~~ 157 (288)
T 3nzj_F 81 LIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYN---SVRPFGVSTIFGGVDKNGAHLYMLEPSGSY 157 (288)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSCT---TBCCCCEEEEEEEEETTEEEEEEECTTSCE
T ss_pred cHHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHhc---cCCCceEEEEEEEEeCCCCEEEEECCCCCE
Confidence 99999999999999999999999999999999999999999999998 899999999999999999999999999999
Q ss_pred eecceEEeCCCchhHHHHHHhh---cCCCCCHHHHHHHHHHHHHHHhcccC-CCCcEEEEEEeC-C----eEEcCHHHHH
Q 026496 161 WQCNAKAIGSGSEGADSSLQEQ---YNKDLTLQEAETIALSILKQVMEEKV-TPNNVDIARVAP-T----YHLYTPSEVE 231 (237)
Q Consensus 161 ~~~~~~a~G~g~~~~~~~Le~~---~~~~~s~~ea~~l~~~~l~~~~~~~~-~~~~iei~ii~~-~----~~~~~~~ei~ 231 (237)
.+++++++|+|++.++++||+. |+++|+++||++++++||..+.+++. ++++++|++|++ + ++.+++++++
T Consensus 158 ~~~~~~aiGsgs~~a~~~Lek~~~~~~~~ms~eEAv~la~~al~~a~~~~~~~~~~iev~vIt~~~~~~~~~~vp~~~~~ 237 (288)
T 3nzj_F 158 WGYKGAATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLHKFVKGDLLQ 237 (288)
T ss_dssp EEBSEEEESTTHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHGGGGTTSEEEEEEEEEETTTSTTCCEECCHHHHH
T ss_pred EEcCEEEEcCcHHHHHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEEecCCCceEEECCHHHHH
Confidence 9999999999999999999999 99999999999999999999999876 567899999999 3 7788888877
Q ss_pred HHH
Q 026496 232 AVI 234 (237)
Q Consensus 232 ~~~ 234 (237)
+..
T Consensus 238 ~~~ 240 (288)
T 3nzj_F 238 EAI 240 (288)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 9
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...
Probab=100.00 E-value=1.2e-61 Score=404.57 Aligned_cols=228 Identities=36% Similarity=0.631 Sum_probs=219.7
Q ss_pred CCCCCCceeCCCCcccchhhHHHHHhcCCcEEEEEeCCEEEEEEeccCCCCCcc-CCcccceEEEcCcEEEEEecchhhH
Q 026496 7 EYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLE-PSSVEKIMEIDEHIGCAMSGLIADA 85 (237)
Q Consensus 7 ~yd~~~~~fsp~G~~~qveya~~~~~~G~t~vgi~~~dgVvla~d~~~~~~~~~-~~~~~ki~~i~~~i~~~~sG~~~D~ 85 (237)
+||+++|+|||||||+|||||++|+++|+|+|||+++||||||+|+|.++++.. +++.+||++|+++++++++|..+|+
T Consensus 4 ~yd~~~t~fsp~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~ 83 (244)
T 1ryp_C 4 RYDSRTTIFSPEGRLYQVEYALESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTADA 83 (244)
T ss_dssp GGCCCTTCBCTTSCBHHHHHHHHHHTTSCCEEEEEETTEEEEEEECSSCCSSBCSTTCCSSEEESSSSEEEEEEECHHHH
T ss_pred ccCCCCceECcCCeeHHHHhHHHHHhcCCcEEEEEeCCEEEEEEeeccCCcCccCCCCCCcEEEECCCEEEEEEEcHHHH
Confidence 799999999999999999999999999999999999999999999999997766 8889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCcCCCCCcceeeEEEEEc-CCCCeEEEECCCCceeecc
Q 026496 86 RTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSD-ENGPSLYYTDPSGTFWQCN 164 (237)
Q Consensus 86 ~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~~~~iv~G~d-~~g~~ly~vd~~G~~~~~~ 164 (237)
+.|.++++.+++.|++.++++++++.+++.+++++|.|+++. +.|||++++|||||| ++||+||.+||+|++.+++
T Consensus 84 ~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~---~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~ 160 (244)
T 1ryp_C 84 EILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHG---GLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYTGWK 160 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBS---SCCCCCEEEEEEEEETTTEEEEEEECTTCCEEEBS
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccC---CccceEEEEEEEEEcCCCCCEEEEECCCccEEeee
Confidence 999999999999999999999999999999999999999987 899999999999999 7789999999999999999
Q ss_pred eEEeCCCchhHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhcc-cCCCCcEEEEEEe--CC-----eEEcCHHHHHHHHHh
Q 026496 165 AKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEE-KVTPNNVDIARVA--PT-----YHLYTPSEVEAVINR 236 (237)
Q Consensus 165 ~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~-~~~~~~iei~ii~--~~-----~~~~~~~ei~~~~~~ 236 (237)
++++|+|++.++++||+.|+++|+++||++++++||..+.++ ++++++++|++|+ ++ ++.++++|+++++++
T Consensus 161 ~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~~~~~~~~~~~l~~~ei~~~~~~ 240 (244)
T 1ryp_C 161 AISVGANTSAAQTLLQMDYKDDMKVDDAIELALKTLSKTTDSSALTYDRLEFATIRKGANDGEVYQKIFKPQEIKDILVK 240 (244)
T ss_dssp EEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCSSSSCCGGGEEEEEEECCSSSSSCEEEECCHHHHHHHHHH
T ss_pred EEEECCCcHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHhccccCCCCcEEEEEEEeecCCCceeEEECCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998 6678889999999 76 789999999999876
Q ss_pred C
Q 026496 237 L 237 (237)
Q Consensus 237 ~ 237 (237)
+
T Consensus 241 ~ 241 (244)
T 1ryp_C 241 T 241 (244)
T ss_dssp H
T ss_pred h
Confidence 3
No 10
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E
Probab=100.00 E-value=5.9e-62 Score=410.25 Aligned_cols=228 Identities=35% Similarity=0.611 Sum_probs=218.9
Q ss_pred CCCCCCCCceeCCCCcccchhhHHHHHhcCCcEEEEEeCCEEEEEEeccCCCCCccCCcccceEEEcCcEEEEEecchhh
Q 026496 5 RTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIAD 84 (237)
Q Consensus 5 ~~~yd~~~~~fsp~G~~~qveya~~~~~~G~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~ki~~i~~~i~~~~sG~~~D 84 (237)
|++||+++|+|||||||+|||||++|+++|+|+|||+++||||||+|+|.++++. ++.+||++|+++++|+++|..+|
T Consensus 3 ~~~yd~~~t~fsP~Grl~QvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r~~~gl~--~~~~KI~~i~~~i~~~~aG~~aD 80 (263)
T 1iru_F 3 RNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELA--AHQKKILHVDNHIGISIAGLTAD 80 (263)
T ss_dssp -CTTTSCTTCCCTTSCCHHHHHHHHHHHHSCCEEEEECSSEEEEEEECCCSSTTB--CCCCCEEEEETTEEEEEEECHHH
T ss_pred cCCCCCCCccCCCCCeehHHHHHHHHHHcCCcEEEEEeCCEEEEEEecccccccc--cchhcEEEEcCCEEEEEeCCHHH
Confidence 7899999999999999999999999999999999999999999999999998764 47799999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCcCCCCCcceeeEEEEEcCCCCeEEEECCCCceeecc
Q 026496 85 ARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCN 164 (237)
Q Consensus 85 ~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~~~~iv~G~d~~g~~ly~vd~~G~~~~~~ 164 (237)
++.|.++++.+++.|++.++++++++.+++.+++++|.|+++. +.|||++++||||||++||+||.+||+|++.+++
T Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~t~~~---~~RP~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~ 157 (263)
T 1iru_F 81 ARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRY---GRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCR 157 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBT---TCCCCCEEEEEEEEETTEEEEEEECSSSCEEEES
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhhccc---ccccceEEEEEEEEcCCCCEEEEECCCCCEEEee
Confidence 9999999999999999999999999999999999999999987 8999999999999999899999999999999999
Q ss_pred eEEeCCCchhHHHHHHhhcCC--CCCHHHHHHHHHHHHHHHhccc--CCCCcEEEEEEeCC--eEEcCHHHHHHHHHhC
Q 026496 165 AKAIGSGSEGADSSLQEQYNK--DLTLQEAETIALSILKQVMEEK--VTPNNVDIARVAPT--YHLYTPSEVEAVINRL 237 (237)
Q Consensus 165 ~~a~G~g~~~~~~~Le~~~~~--~~s~~ea~~l~~~~l~~~~~~~--~~~~~iei~ii~~~--~~~~~~~ei~~~~~~~ 237 (237)
++++|+|++.++++||+.|++ +|+++||++++++||..+.++| .++++++|++|+++ +++++++||+++++++
T Consensus 158 ~~aiGsgs~~a~~~Le~~~~~~~~ms~eea~~la~~al~~~~~rd~~~sg~~iev~vi~~~~~~~~l~~~ei~~~~~~~ 236 (263)
T 1iru_F 158 AMSIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLEGL 236 (263)
T ss_dssp EEEESTTHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCTTCCCCTTTEEEEEEETTEEEEEECSGGGHHHHTTC
T ss_pred EEEcCcccHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHhccccCCCCcEEEEEEECCCCeEECCHHHHHHHHHHH
Confidence 999999999999999999998 9999999999999999999998 57889999999999 9999999999998764
No 11
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Probab=100.00 E-value=4.6e-61 Score=400.39 Aligned_cols=225 Identities=38% Similarity=0.633 Sum_probs=216.8
Q ss_pred CCCCCCceeCCCCcccchhhHHHHHhcCCcEEEEEeCCEEEEEEeccCCCCCccC-CcccceEEEcCcEEEEEecchhhH
Q 026496 7 EYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEP-SSVEKIMEIDEHIGCAMSGLIADA 85 (237)
Q Consensus 7 ~yd~~~~~fsp~G~~~qveya~~~~~~G~t~vgi~~~dgVvla~d~~~~~~~~~~-~~~~ki~~i~~~i~~~~sG~~~D~ 85 (237)
+||+++|+|||||||+|||||++|+++|+|+|||+++||||||+|+|.++++... ++.+||++|+++++++++|..+|+
T Consensus 1 ~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~ 80 (241)
T 1ryp_D 1 GYDRALSIFSPDGHIFQVEYALEAVKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNADS 80 (241)
T ss_dssp CCCCCCSCCBTTTBCHHHHHHHHHHTTSCCEEEEECSSCEEEEEECCCSSCCBCTTTSCCSEEEEETTEEEEEEECHHHH
T ss_pred CCCCCceeECCCCcchHHHHHHHHHHcCCCEEEEEeCCEEEEEEeeccCccCccccCCcCcEEEecCCEEEEEeecHHHH
Confidence 5999999999999999999999999999999999999999999999999977554 488999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCcCCCCCcceeeEEEEEcC--CCCeEEEECCCCceeec
Q 026496 86 RTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDE--NGPSLYYTDPSGTFWQC 163 (237)
Q Consensus 86 ~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~~~~iv~G~d~--~g~~ly~vd~~G~~~~~ 163 (237)
+.|.++++.+++.|++.++++++++.+++.++++++.|+++. ++|||++++||||||+ +||+||.+||+|++.++
T Consensus 81 ~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~---~~rP~~v~~lvaG~D~~~~gp~Ly~idp~G~~~~~ 157 (241)
T 1ryp_D 81 RILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSG---GVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIYSSW 157 (241)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSST---TBCCCSEEEEEEECCTTCCSCEEEEECTTSCEEEB
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHccCC---CCCCcceeeEEEEEcCCCCCeeEEEECCCCCEEEe
Confidence 999999999999999999999999999999999999999998 8999999999999998 78999999999999999
Q ss_pred ceEEeCCCchhHHHHHHhhc---CCCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEEeCC--eEEcCHHHHHHHHHh
Q 026496 164 NAKAIGSGSEGADSSLQEQY---NKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPT--YHLYTPSEVEAVINR 236 (237)
Q Consensus 164 ~~~a~G~g~~~~~~~Le~~~---~~~~s~~ea~~l~~~~l~~~~~~~~~~~~iei~ii~~~--~~~~~~~ei~~~~~~ 236 (237)
+++++|+|++.++++||+.| +++||++||++++++||..+.+ .++++++|++|+++ +++++++|+++++++
T Consensus 158 ~~~aiG~gs~~a~~~Le~~~~~~~~~ms~eea~~l~~~al~~~~~--~sg~~i~v~vi~~~~~~~~l~~~ei~~~~~~ 233 (241)
T 1ryp_D 158 SAQTIGRNSKTVREFLEKNYDRKEPPATVEECVKLTVRSLLEVVQ--TGAKNIEITVVKPDSDIVALSSEEINQYVTQ 233 (241)
T ss_dssp SEEEESTTHHHHHHHHHTTCCTTSCCCSHHHHHHHHHHHHHHHHC--SCSTTEEEEEEETTTEEEECCHHHHHHHHHH
T ss_pred eeEEECCCcHHHHHHHHHhhhcccCCCCHHHHHHHHHHHHHHHhc--CCCCcEEEEEEECCCcEEECCHHHHHHHHHH
Confidence 99999999999999999999 9999999999999999999987 67889999999998 999999999999875
No 12
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Probab=100.00 E-value=2.1e-61 Score=405.18 Aligned_cols=232 Identities=31% Similarity=0.493 Sum_probs=222.0
Q ss_pred CCCCCCCCCCCceeCCCCcccchhhHHHHHhcCCcEEEEEeCCEEEEEEeccCCCCCccCCcccceEEEcCcEEEEEecc
Q 026496 2 FLTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGL 81 (237)
Q Consensus 2 ~~~~~~yd~~~~~fsp~G~~~qveya~~~~~~G~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~ki~~i~~~i~~~~sG~ 81 (237)
+++.++||+++|+|||||||+|||||++|+++|+|+|||+++||||||+|+|.++++...++.+||++|+++++|+++|.
T Consensus 1 ~~~~~~yd~~~t~fsp~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~KI~~i~~~i~~~~aG~ 80 (254)
T 1iru_G 1 SSIGTGYDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRLFNVDRHVGMAVAGL 80 (254)
T ss_dssp CCCCSSTTSCTTCCCTTSCCHHHHHHHHHHHTSCCEEEEECSSBEEEEEEEECSCTTBCTTTTCCEEEEETTEEEEEEEC
T ss_pred CCcccccCCCCccCCcCCccHHHHhHHHHHhcCCCEEEEEECCEEEEEEecccCCCCcCcCcCCcEEEECCCEEEEEecC
Confidence 46788999999999999999999999999999999999999999999999999997766778899999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCcCCCCCcceeeEEEEEc-CCCCeEEEECCCCce
Q 026496 82 IADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSD-ENGPSLYYTDPSGTF 160 (237)
Q Consensus 82 ~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~~~~iv~G~d-~~g~~ly~vd~~G~~ 160 (237)
.+|++.|.++++.+++.|+++++++++++.+++.+++++|.|+++. ++|||++++|||||| ++||+||.+||+|++
T Consensus 81 ~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~---~~rP~~v~~lvaG~D~~~gp~Ly~idp~G~~ 157 (254)
T 1iru_G 81 LADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYS---AVRPFGCSFMLGSYSVNDGAQLYMIDPSGVS 157 (254)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSBS---SBCCCSEEEEEEEEETTTEEEEEEECTTCCE
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcccc---ccccceEEEEEEEEeCCCCcEEEEEcCCCCE
Confidence 9999999999999999999999999999999999999999999988 899999999999999 678999999999999
Q ss_pred eecceEEeCCCchhHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhcccC-CCCcEEEEEEeCC----eEEcCHHHHHHHHH
Q 026496 161 WQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKV-TPNNVDIARVAPT----YHLYTPSEVEAVIN 235 (237)
Q Consensus 161 ~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~~~-~~~~iei~ii~~~----~~~~~~~ei~~~~~ 235 (237)
.+++++++|+|++.++++||+.|+++|+++||++++++||..+.+++. ++.+++|++|+++ +++++++|++++++
T Consensus 158 ~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~~~~~~~iev~vi~~~~~g~~~~l~~~~i~~~~~ 237 (254)
T 1iru_G 158 YGYWGCAIGKARQAAKTEIEKLQMKEMTCRDIVKEVAKIIYIVHDEVKDKAFELELSWVGELTNGRHEIVPKDIREEAEK 237 (254)
T ss_dssp EEBSEEEESTTHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHSCSSSSCCEEEEEEECBTTTTTCCEECCHHHHHHHHH
T ss_pred EeeeeEEecCccHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhhccCCCCcEEEEEEEcCCCCCeEECCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999988876 6778999999976 99999999999987
Q ss_pred h
Q 026496 236 R 236 (237)
Q Consensus 236 ~ 236 (237)
.
T Consensus 238 ~ 238 (254)
T 1iru_G 238 Y 238 (254)
T ss_dssp H
T ss_pred H
Confidence 5
No 13
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Probab=100.00 E-value=1.1e-60 Score=400.07 Aligned_cols=229 Identities=36% Similarity=0.586 Sum_probs=220.0
Q ss_pred CCCCCCCceeCCCCcccchhhHHHHHhcCCcEEEEEeCCEEEEEEeccCCCCCccCCcccceEEEcCcEEEEEecchhhH
Q 026496 6 TEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADA 85 (237)
Q Consensus 6 ~~yd~~~~~fsp~G~~~qveya~~~~~~G~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~ki~~i~~~i~~~~sG~~~D~ 85 (237)
++||+++|+|||||||+|||||++|+++|+|+|||+++||||||+|+|.+.+++.+++.+||++|+++++|+++|..+|+
T Consensus 3 ~~yd~~~t~fsp~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~ 82 (250)
T 1ryp_B 3 DRYSFSLTTFSPSGKLGQIDYALTAVKQGVTSLGIKATNGVVIATEKKSSSPLAMSETLSKVSLLTPDIGAVYSGMGPDY 82 (250)
T ss_dssp CCCCSBSSCBCTTSCBHHHHHHHHHHHTSCCEEEEEETTEEEEEEECCCSCSSBCGGGCCSSEEEETTEEEEEEECHHHH
T ss_pred CcccCCceeECCCCccHHHHhHHHHHHcCCcEEEEEECCEEEEEEeccCCCccccCcccCceEEECCCEEEEeeeCHHHH
Confidence 48999999999999999999999999999999999999999999999998788888899999999999999999999999
Q ss_pred HHHHHHHHHHHHH-HHHHhCCCCCHHHHHHHHHHHHHHhcCCCCcCCCCCcceeeEEEEEcC-CCCeEEEECCCCceeec
Q 026496 86 RTLVEHARVETQN-HRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDE-NGPSLYYTDPSGTFWQC 163 (237)
Q Consensus 86 ~~l~~~~~~~~~~-~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~~~~iv~G~d~-~g~~ly~vd~~G~~~~~ 163 (237)
+.|.++++.+++. |+..++.+++++.+++.++++++.++++. ++|||++++||||||+ +||+||.+||+|++.++
T Consensus 83 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~~~~~~~~---~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~ 159 (250)
T 1ryp_B 83 RVLVDKSRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEATQSG---GVRPFGVSLLIAGHDEFNGFSLYQVDPSGSYFPW 159 (250)
T ss_dssp HHHHHHHHHHHHHTTHHHHSSCCCHHHHHHHHHHHHHHTTTSB---TBCCCCEEEEEEEEETTTEEEEEEECTTSCEEEB
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcC---CcccceEEEEEEEEcCCCCcEEEEECCCCCEEee
Confidence 9999999999999 99999999999999999999999999987 8899999999999997 58999999999999999
Q ss_pred ceEEeCCCchhHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEEeCC-----------------eEEcC
Q 026496 164 NAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPT-----------------YHLYT 226 (237)
Q Consensus 164 ~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~~~~~~~iei~ii~~~-----------------~~~~~ 226 (237)
+++++|+|++.++++||+.|+++||++||++++++||..+.+++.++++++|++|+++ |++++
T Consensus 160 ~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~~sg~~i~v~vi~~~~~~~~~~~~~~~~~~~~~~~l~ 239 (250)
T 1ryp_B 160 KATAIGKGSVAAKTFLEKRWNDELELEDAIHIALLTLKESVEGEFNGDTIELAIIGDENPDLLGYTGIPTDKGPRFRKLT 239 (250)
T ss_dssp SEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCCSCCSTTTEEEEEECSCCGGGTSEESCSSCCCCSEEECC
T ss_pred ceeEecCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhccccCCCCEEEEEEEccccccccccccccCCCCCeEECC
Confidence 9999999999999999999999999999999999999999988778889999999973 89999
Q ss_pred HHHHHHHHHhC
Q 026496 227 PSEVEAVINRL 237 (237)
Q Consensus 227 ~~ei~~~~~~~ 237 (237)
++||+++++++
T Consensus 240 ~~ei~~~l~~~ 250 (250)
T 1ryp_B 240 SQEINDRLEAL 250 (250)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHHhC
Confidence 99999999864
No 14
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Probab=100.00 E-value=7e-61 Score=403.51 Aligned_cols=228 Identities=37% Similarity=0.625 Sum_probs=218.0
Q ss_pred CCCCCCCceeCCCCcccchhhHHHHHhcCCcEEEEEeCCEEEEEEeccCCCCCcc-CCcccceEEEcCcEEEEEecchhh
Q 026496 6 TEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLE-PSSVEKIMEIDEHIGCAMSGLIAD 84 (237)
Q Consensus 6 ~~yd~~~~~fsp~G~~~qveya~~~~~~G~t~vgi~~~dgVvla~d~~~~~~~~~-~~~~~ki~~i~~~i~~~~sG~~~D 84 (237)
++||+++|+|||||||+|||||++|+++|+|+|||+++||||||+|+|.++++.. +++.+||++|+++++|+++|..+|
T Consensus 3 ~~yd~~~t~fsp~Grl~QvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD 82 (261)
T 1iru_C 3 RRYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSD 82 (261)
T ss_dssp TTTCCCTTCCCTTSCCHHHHHHHHHHTTSCCEEEEBCSSEEEEEECCCCCCTTBCCCSSCSSEEECSSSEEEEEEECHHH
T ss_pred CccCCCCccCCCCCeehHHHhHHHHHhcCCcEEEEEeCCEEEEEEecccCCcccccCCCCccEEEecCCEEEEEeEcHHH
Confidence 4899999999999999999999999999999999999999999999999997655 445899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCcCCCCCcceeeEEEEEcC-CCCeEEEECCCCceeec
Q 026496 85 ARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDE-NGPSLYYTDPSGTFWQC 163 (237)
Q Consensus 85 ~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~~~~iv~G~d~-~g~~ly~vd~~G~~~~~ 163 (237)
++.|.++++.+++.|++.++++++++.+++.+++++|.|+++. +.|||++++||||||+ +||+||.+||+|++.++
T Consensus 83 ~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~---~~rP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~ 159 (261)
T 1iru_C 83 ANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFG---GKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGW 159 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTBS---SCCCCCEEEEEEEEETTTEEEEEEEETTTEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcccc---CcCcceEEEEEEEEeCCCCcEEEEECCCceEEee
Confidence 9999999999999999999999999999999999999999988 8999999999999995 68999999999999999
Q ss_pred ceEEeCCCchhHHHHHHhhcCC-CCCHHHHHHHHHHHHHHHhcccC-CCCcEEEEEEeCC-----eEEcCHHHHHHHHHh
Q 026496 164 NAKAIGSGSEGADSSLQEQYNK-DLTLQEAETIALSILKQVMEEKV-TPNNVDIARVAPT-----YHLYTPSEVEAVINR 236 (237)
Q Consensus 164 ~~~a~G~g~~~~~~~Le~~~~~-~~s~~ea~~l~~~~l~~~~~~~~-~~~~iei~ii~~~-----~~~~~~~ei~~~~~~ 236 (237)
+++++|+|++.++++||+.|++ +||++||++++++||..+.+++. ++++++|++|+++ +++++++||++++++
T Consensus 160 ~~~aiGsgs~~a~~~Le~~~~~~~ms~eeA~~la~~al~~~~~~d~~sg~~i~v~vi~~~~~~~~~~~l~~~ei~~~l~~ 239 (261)
T 1iru_C 160 KATCIGNNSAAAVSMLKQDYKEGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVEQLIKK 239 (261)
T ss_dssp SEEEESTTTTHHHHHHHHHCCTTCCCHHHHHHHHHHHHHHSSSCTTCCSTTCEEEEEECCSSSCEEEECCHHHHHHHHHH
T ss_pred eeEEeCcccHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEcCCCeeeEEECCHHHHHHHHHH
Confidence 9999999999999999999999 99999999999999999999976 6789999999987 699999999999875
No 15
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Probab=100.00 E-value=3.2e-61 Score=402.84 Aligned_cols=225 Identities=39% Similarity=0.665 Sum_probs=217.5
Q ss_pred CCCCCceeCCCCcccchhhHHHHHhcCCcEEEEEeCCEEEEEEeccCCCCCccCCcccceEEEcCcEEEEEecchhhHHH
Q 026496 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADART 87 (237)
Q Consensus 8 yd~~~~~fsp~G~~~qveya~~~~~~G~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~ 87 (237)
||+++|+|||||||+|||||++|+++|+|+|||+++||||||+|+|.+++++.+++.+||++|+++++++++|..+|++.
T Consensus 3 yd~~~t~fsp~Grl~QvEYA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~ 82 (248)
T 1iru_D 3 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVAKLQDERTVRKICALDDNVCMAFAGLTADARI 82 (248)
T ss_dssp CCCCCSCCCTTSCCHHHHHHHHHHHTSCCEEEECCSSEEEEEECCCCCCSSSCGGGGCSEEESSSSCEEEEEECHHHHHH
T ss_pred ccCCCceECCCCcchHHHHHHHHHHcCCCEEEEEeCCEEEEEEeecccccCccCCCCCcEEEEcCCEEEEEeecHHHHHH
Confidence 99999999999999999999999999999999999999999999999998877888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCcCCCCCcceeeEEEEEc-CCCCeEEEECCCCceeecceE
Q 026496 88 LVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSD-ENGPSLYYTDPSGTFWQCNAK 166 (237)
Q Consensus 88 l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~~~~iv~G~d-~~g~~ly~vd~~G~~~~~~~~ 166 (237)
|.++++.+++.|+++++++++++.+++.+++++|.|+++. +.|||++++|||||| ++||+||.+||+|++.+++++
T Consensus 83 l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~---~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~ 159 (248)
T 1iru_D 83 VINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSN---GRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKAN 159 (248)
T ss_dssp HHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHTTSBT---TBCCCCEEEEEEEECSSSCEEEEEECTTSCEEEBSEE
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccC---CcccccEEEEEEEEeCCCCcEEEEEcCCCcEEEeeEE
Confidence 9999999999999999999999999999999999999998 899999999999999 779999999999999999999
Q ss_pred EeCCCchhHHHHHHhhcCCCC--CHHHHHHHHHHHHHHHhcccCCCCcEEEEEEeCC--eEEcCHHHHHHHHHhC
Q 026496 167 AIGSGSEGADSSLQEQYNKDL--TLQEAETIALSILKQVMEEKVTPNNVDIARVAPT--YHLYTPSEVEAVINRL 237 (237)
Q Consensus 167 a~G~g~~~~~~~Le~~~~~~~--s~~ea~~l~~~~l~~~~~~~~~~~~iei~ii~~~--~~~~~~~ei~~~~~~~ 237 (237)
++|+|++.++++||+.|+++| +++||++++++||..+.+ .++++++|++|+++ +++++++|++++++++
T Consensus 160 aiG~gs~~a~~~Le~~~~~~m~~s~eea~~la~~al~~~~~--~sg~~i~v~vi~~~g~~~~l~~~ei~~~~~~~ 232 (248)
T 1iru_D 160 AIGRGAKSVREFLEKNYTDEAIETDDLTIKLVIKALLEVVQ--SGGKNIELAVMRRDQSLKILNPEEIEKYVAEI 232 (248)
T ss_dssp EESTTHHHHHHHHTTTCCSSTTCSHHHHHHHHHHHHHTTSC--TTSTTCCEEEEESSSCEECCCHHHHHHHTTTT
T ss_pred EECCCcHHHHHHHHHhhcccccCCHHHHHHHHHHHHHHHHc--CCCCcEEEEEEECCCcEEECCHHHHHHHHHHH
Confidence 999999999999999999999 999999999999999987 46788999999998 9999999999998753
No 16
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...
Probab=100.00 E-value=1.6e-61 Score=401.25 Aligned_cols=225 Identities=36% Similarity=0.563 Sum_probs=214.3
Q ss_pred CCCCCCCCceeCCCCcccchhhHHHHHhcCCcEEEEEeCCEEEEEEeccCCCCCccCCcccceEEEcCcEEEEEecchhh
Q 026496 5 RTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIAD 84 (237)
Q Consensus 5 ~~~yd~~~~~fsp~G~~~qveya~~~~~~G~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~ki~~i~~~i~~~~sG~~~D 84 (237)
|++||+++|+|||||||+|||||++|+++|+|+|||+++||||||+|+|.++++. ++.+||++|+++++++++|..+|
T Consensus 2 ~~~yd~~~t~fsp~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~--~~~~Ki~~i~~~i~~~~aG~~aD 79 (233)
T 1ryp_F 2 RNNYDGDTVTFSPTGRLFQVEYALEAIKQGSVTVGLRSNTHAVLVALKRNADELS--SYQKKIIKCDEHMGLSLAGLAPD 79 (233)
T ss_dssp HHHHSSCTTCCCTTSCCHHHHHHHHHHHTSCCEEEEECSSEEEEEEECCCSSTTB--CCCCCEEEEETTEEEEEEECHHH
T ss_pred CCcccCCCccCCCCCeehHHHHHHHHHHcCCCEEEEEcCCEEEEEEEeccccccc--cccCcEEEEcCCEEEEEEechHH
Confidence 4689999999999999999999999999999999999999999999999988764 47799999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCcCCCCCcceeeEEEEEcCCCCeEEEECCCCceeecc
Q 026496 85 ARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCN 164 (237)
Q Consensus 85 ~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~~~~iv~G~d~~g~~ly~vd~~G~~~~~~ 164 (237)
++.|.++++.+++.|+++++++++++.+++.+++++|.|+++. +.|||++++||||||++||+||.+||+|++.+++
T Consensus 80 ~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~---~~rp~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~ 156 (233)
T 1ryp_F 80 ARVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSY---GGRPYGVGLLIIGYDKSGAHLLEFQPSGNVTELY 156 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHBT---TCCCCCEEEEEEEEETTEEEEEEECTTSCEEEES
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccc---CCcCcceEEEEEEEeCCcCEEEEECCCCCeeeee
Confidence 9999999999999999999999999999999999999999988 8899999999999999999999999999999999
Q ss_pred eEEeCCCchhHHHHHHhhcCC--CC--CHHHHHHHHHHHHHHHhccc-CCCCcEEEEEEeCC--eEEcCHHHHHHHH
Q 026496 165 AKAIGSGSEGADSSLQEQYNK--DL--TLQEAETIALSILKQVMEEK-VTPNNVDIARVAPT--YHLYTPSEVEAVI 234 (237)
Q Consensus 165 ~~a~G~g~~~~~~~Le~~~~~--~~--s~~ea~~l~~~~l~~~~~~~-~~~~~iei~ii~~~--~~~~~~~ei~~~~ 234 (237)
++|+|+|++.++++||+.|++ +| |++||+++++++|..+.+++ .++++++|++|+++ +++++++||+++|
T Consensus 157 ~~aiG~gs~~a~~~Le~~~~~~~~m~~s~eea~~~a~~al~~~~~d~~~s~~~i~v~vi~~~~~~~~l~~~ei~~~l 233 (233)
T 1ryp_F 157 GTAIGARSQGAKTYLERTLDTFIKIDGNPDELIKAGVEAISQSLRDESLTVDNLSIAIVGKDTPFTIYDGEAVAKYI 233 (233)
T ss_dssp EEEESTTHHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHTTSCCSSCCCTTTEEEEEEETTEEEEEEEGGGGGGGC
T ss_pred EEEECCCcHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHHHhhcccCCCCcEEEEEEECCCCEEECCHHHHHhhC
Confidence 999999999999999999998 99 99999999999999998432 47889999999999 9999999998764
No 17
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Probab=100.00 E-value=1e-60 Score=398.51 Aligned_cols=225 Identities=62% Similarity=0.987 Sum_probs=216.8
Q ss_pred CCCCceeCCCCcccchhhHHHHHhcCCcEEEEEeCCEEEEEEeccCCCCCccCCcccceEEEcCcEEEEEecchhhHHHH
Q 026496 9 DRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTL 88 (237)
Q Consensus 9 d~~~~~fsp~G~~~qveya~~~~~~G~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l 88 (237)
|+++|+|||||||+|||||++|+++|+|+|||+++||||||+|+|.++++..+++.+||++|+++++|+++|..+|++.|
T Consensus 1 d~~~t~fsp~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l 80 (242)
T 1ryp_E 1 DRGVSTFSPEGRLFQVEYSLEAIKLGSTAIGIATKEGVVLGVEKRATSPLLESDSIEKIVEIDRHIGCAMSGLTADARSM 80 (242)
T ss_dssp CCCTTCBCTTSCBHHHHHHHHHHTTSCCEEEEECSSCEEEEEECCCSSTTBCGGGCCCEEEEETTEEEEEEESGGGHHHH
T ss_pred CCCCceECCCCcChHHHhHHHHHHcCCCEEEEEECCEEEEEEeecCCCcCccCccCCceEEEcCCEEEEEeecHHHHHHH
Confidence 78899999999999999999999999999999999999999999999977668888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCcCC------CCCcceeeEEEEEc-CCCCeEEEECCCCcee
Q 026496 89 VEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESM------SRPFGVSLLIAGSD-ENGPSLYYTDPSGTFW 161 (237)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~------~rP~~~~~iv~G~d-~~g~~ly~vd~~G~~~ 161 (237)
.++++.+++.|++.++++++++.+++.+++++|.|+++. + .|||++++|||||| ++||+||.+||+|++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~---~~~~~l~~RP~~v~~lvaG~D~~~gp~Ly~idp~G~~~ 157 (242)
T 1ryp_E 81 IEHARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGA---SGEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTFY 157 (242)
T ss_dssp HHHHHHHHHHHHHHHSSCCCHHHHHHHHHTTTTCCBSSC---TTSCCCBSSCCSEEEEEEEEETTTEEEEEEECTTSCEE
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcccc---CcccccccCcceEEEEEEEEeCCCCCEEEEECCCCCEe
Confidence 999999999999999999999999999999999999887 7 89999999999999 6789999999999999
Q ss_pred ecceEEeCCCchhHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEEeCC--eEEcCHHHHHHHHHh
Q 026496 162 QCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPT--YHLYTPSEVEAVINR 236 (237)
Q Consensus 162 ~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~~~~~~~iei~ii~~~--~~~~~~~ei~~~~~~ 236 (237)
+++++++|+|++.++++||+.|+++||++||++++++||..+.++..++++++|++|+++ +++++++|+++++++
T Consensus 158 ~~~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~~sg~~i~v~vi~~~~~~~~~~~~ei~~~~~~ 234 (242)
T 1ryp_E 158 RYNAKAIGSGSEGAQAELLNEWHSSLTLKEAELLVLKILKQVMEEKLDENNAQLSCITKQDGFKIYDNEKTAELIKE 234 (242)
T ss_dssp EBSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCSSCCCTTSEEEEEEETTTEEEECCHHHHHHHHHH
T ss_pred ccCEEEECCCCHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCeEECCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998667889999999999 899999999999875
No 18
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...
Probab=100.00 E-value=5.5e-60 Score=394.39 Aligned_cols=227 Identities=36% Similarity=0.589 Sum_probs=213.6
Q ss_pred CCCCCCCCceeCCCCcccchhhHHHHHhcCCcEEEEEeCCEEEEEEeccCCCCCccCCcccceEEEcCcEEEEEecchhh
Q 026496 5 RTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIAD 84 (237)
Q Consensus 5 ~~~yd~~~~~fsp~G~~~qveya~~~~~~G~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~ki~~i~~~i~~~~sG~~~D 84 (237)
+++||+++|+||||||++|||||++|+++|+|+|||+++||||||+|+|.++++...+..+||++|+++++++++|..+|
T Consensus 1 ~~~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~KI~~i~~~i~~~~aG~~aD 80 (244)
T 1ryp_G 1 GTGYDLSNSVFSPDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNVKIQVVDRHIGCVYSGLIPD 80 (244)
T ss_dssp CCCTTSSTTCCCTTSCCHHHHHHHHHHHTSCCEEEEEETTEEEEEEEEECCCTTBCTTTSCCCEEETTTEEEEEEECHHH
T ss_pred CCCccCCcccCCcCCchHHHHhHHHHHHCCCCEEEEEECCEEEEEEecccCCCCccccccCceEEecCCEEEEEcccHHH
Confidence 46899999999999999999999999999999999999999999999999997766556699999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCcCCCCCcceeeEEEEEcCCCCeEEEECCCCceeecc
Q 026496 85 ARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCN 164 (237)
Q Consensus 85 ~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~~~~iv~G~d~~g~~ly~vd~~G~~~~~~ 164 (237)
++.|.++++.+++.|+++++++++++.+++.+++.+|.|+++. +.|||++++||||||++||+||.+||+|++.+++
T Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~---~~rp~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~ 157 (244)
T 1ryp_G 81 GRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYN---SVRPFGVSTIFGGVDKNGAHLYMLEPSGSYWGYK 157 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSCT---TBCCCCEEEEEEEEETTEEEEEEECTTSCEEEBS
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccc---CccCceEEEEEEEEeCCcCEEEEECCCCCEEEee
Confidence 9999999999999999999999999999999999999999997 8899999999999999899999999999999999
Q ss_pred eEEeCCCchhHHHHHHhh---cCCCCCHHHHHHHHHHHHHHHhcccC-CCCcEEEEEEeC---C-eEEcCHHHHHHHH
Q 026496 165 AKAIGSGSEGADSSLQEQ---YNKDLTLQEAETIALSILKQVMEEKV-TPNNVDIARVAP---T-YHLYTPSEVEAVI 234 (237)
Q Consensus 165 ~~a~G~g~~~~~~~Le~~---~~~~~s~~ea~~l~~~~l~~~~~~~~-~~~~iei~ii~~---~-~~~~~~~ei~~~~ 234 (237)
++++|+|++.++++||+. |+++||++||++++++||..+.+++. ++++++|++|++ + ++.+.++++.+..
T Consensus 158 ~~aiG~gs~~a~~~Le~~~~~~~~~ms~eea~~la~~al~~~~~~d~~s~~~iev~vi~~~~~~g~~~~~~~~~~~~~ 235 (244)
T 1ryp_G 158 GAATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLHKFVKGDLLQEA 235 (244)
T ss_dssp EEEESTTHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHGGGGTTSCEEEEEEEEETTTTTTSEEECCTHHHHHH
T ss_pred EEEECCChHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHHHhccCCCCCeEEEEEEEecCCCCeeeeChHHHHHHH
Confidence 999999999999999998 99999999999999999999999987 577899999998 5 7776666665443
No 19
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A
Probab=100.00 E-value=3.7e-51 Score=343.56 Aligned_cols=212 Identities=22% Similarity=0.355 Sum_probs=193.3
Q ss_pred ceeCCCCccc-chhhHHHHHhcCCcEEEEEeCCEEEEEEeccCCCCCccCCcccceEEEcCcEEEEEecchhhHHHHHHH
Q 026496 13 NTFSPEGRLF-QVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEH 91 (237)
Q Consensus 13 ~~fsp~G~~~-qveya~~~~~~G~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~ 91 (237)
.-|||||++. |||||++|+++|+|+|||+++||||||+|+| +++.+||++|++|++|+++|..+|++.|.++
T Consensus 5 ~~~sPe~~~~~qvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r-------s~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~ 77 (259)
T 1q5q_A 5 YYASAEQIMRDRSELARKGIARGRSVVVLTFRDGVLFVAENP-------STALHKVSELYDRLGFAAVGKYNEFENLRRA 77 (259)
T ss_dssp ----CHHHHHHHHHHHHHHHHTSCCEEEEECSSEEEEEECCS-------CSSSCSEEEEETTEEEEEEECHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHHHhcCCcEEEEEeCCEEEEEEecC-------CCCcCcEEEeCCCEEEEEccCHHHHHHHHHH
Confidence 3589999996 9999999999999999999999999999998 3677999999999999999999999999999
Q ss_pred HHHHHHHHHHHhC-CCCCHHHHHHHHHH-HHHHhcCCCCcCCCCCcceeeEEEEEc----CCCCeEEEECCCCcee-ecc
Q 026496 92 ARVETQNHRFSYG-EPMTVESTTQALCD-LALRFGEGDEESMSRPFGVSLLIAGSD----ENGPSLYYTDPSGTFW-QCN 164 (237)
Q Consensus 92 ~~~~~~~~~~~~~-~~i~~~~la~~ls~-~~~~~~~~~~~~~~rP~~~~~iv~G~d----~~g~~ly~vd~~G~~~-~~~ 164 (237)
++.+++.+++.++ ++++++.+++.+++ +.|.|+. +.|||++++|||||| ++||+||.+||+|++. +++
T Consensus 78 ~~~~~~~~~~~~~~~~i~v~~la~~l~~~l~q~yt~-----~~rP~~v~~lvaG~D~~~~~~gp~Ly~idp~G~~~~~~~ 152 (259)
T 1q5q_A 78 GIVHADMRGYSYDRRDVTGRSLANAYAQTLGTIFTE-----QPKPYEVEICVAEVGRVGSPKAPQLYRITYDGSIVDEQH 152 (259)
T ss_dssp HHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHHHHH-----SSSCCCEEEEEEECCCSSCCCCCEEEEEETTSCEEEESS
T ss_pred HHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHhcc-----CCCCceEEEEEEEEcccCCCCCCEEEEECCCCceeeCCC
Confidence 9999999999988 49999999999999 6677873 569999999999999 6799999999999999 889
Q ss_pred eEEeCCCchhHHHHHHhhcCCCCCHHHHHHHHHHHHHHHh-----cccCCCCcEEEEEEeCC-----eEEcCHHHHHHHH
Q 026496 165 AKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVM-----EEKVTPNNVDIARVAPT-----YHLYTPSEVEAVI 234 (237)
Q Consensus 165 ~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~-----~~~~~~~~iei~ii~~~-----~~~~~~~ei~~~~ 234 (237)
++++|++++.++++||+.|+++|+++||++++++||..+. ++++++++++|++|+++ |++++++||++++
T Consensus 153 ~~aiG~gs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~~~~rd~sg~~iev~vi~~~~~~~~~~~l~~~ei~~~~ 232 (259)
T 1q5q_A 153 FVVMGGTTEPIATAMRESYRADLDLEAAVGIAVNALRQGGAGEGEKRNVDVASLEVAVLDQSRPRRAFRRIAGTALEQLV 232 (259)
T ss_dssp EEEESSSHHHHHHHHHHHCCTTCCHHHHHHHHHHHHTTCC--------CCSSCSEEEEEETTSSSCCEEECCHHHHHTTS
T ss_pred EEEECCChHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhhcccccccCCCCcEEEEEEECCCCcCCeEECCHHHHHHHH
Confidence 9999999999999999999999999999999999999998 78887789999999986 9999999999887
Q ss_pred Hh
Q 026496 235 NR 236 (237)
Q Consensus 235 ~~ 236 (237)
.+
T Consensus 233 ~~ 234 (259)
T 1q5q_A 233 PA 234 (259)
T ss_dssp CC
T ss_pred HH
Confidence 54
No 20
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} SCOP: d.153.1.4 PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D
Probab=100.00 E-value=5.3e-50 Score=333.86 Aligned_cols=209 Identities=22% Similarity=0.343 Sum_probs=190.9
Q ss_pred CCCCccc-chhhHHHHHhcCCcEEEEEeCCEEEEEEeccCCCCCccCCcccceEEEcCcEEEEEecchhhHHHHHHHHHH
Q 026496 16 SPEGRLF-QVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARV 94 (237)
Q Consensus 16 sp~G~~~-qveya~~~~~~G~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~ 94 (237)
|||+-+. ++|||++|+++|+|+|||+++||||||+|+| +++.+||++|++|++|+++|..+|++.|.+.++.
T Consensus 8 ~p~~~~~~r~EYA~~av~~GtT~vgi~~kdgVVlaadkr-------~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~~~~ 80 (248)
T 3mi0_A 8 SPEQAMRERSELARKGIARAKSVVALAYAGGVLFVAENP-------SRSLQKISELYDRVGFAAAGKFNEFDNLRRGGIQ 80 (248)
T ss_dssp CHHHHHHHHHHHHHHHHHTSCCEEEEEETTEEEEEEECC-------CSSSCSEEEEETTEEEEEEECHHHHHHHHHHHHH
T ss_pred CHHHhcccchHHHHHHHhCCCcEEEEEeCCEEEEEEeCC-------CCCCCCeEEECCCEEEEEccCHHHHHHHHHHHHH
Confidence 6777666 7999999999999999999999999999999 3577999999999999999999999999999999
Q ss_pred HHHHHHHHhC-CCCCHHHHHHHHH-HHHHHhcCCCCcCCCCCcceeeEEEEEcC----CCCeEEEECCCCceee-cceEE
Q 026496 95 ETQNHRFSYG-EPMTVESTTQALC-DLALRFGEGDEESMSRPFGVSLLIAGSDE----NGPSLYYTDPSGTFWQ-CNAKA 167 (237)
Q Consensus 95 ~~~~~~~~~~-~~i~~~~la~~ls-~~~~~~~~~~~~~~~rP~~~~~iv~G~d~----~g~~ly~vd~~G~~~~-~~~~a 167 (237)
+++.|++.++ .+++++.+++.++ .+.|.|+++ .|||+|++||||||+ +||+||++||+|++.+ ++++|
T Consensus 81 ~~~l~~~~~~~~~i~v~~la~~l~~~l~q~yt~~-----~rP~gv~~liaG~D~~~~~~gp~Ly~~Dp~G~~~~e~~~~a 155 (248)
T 3mi0_A 81 FADTRGYAYDRRDVTGRQLANVYAQTLGTIFTEQ-----AKPYEVELCVAEVAHYGETKRPELYRITYDGSIADEPHFVV 155 (248)
T ss_dssp HHHHHHHHSCGGGCCHHHHHHHHHHHHHHHHHHS-----SSCCCEEEEEEECCCTTCCCCCEEEEECTTSCEEEESSEEE
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccC-----CCCceEEEEEEEEcCCCCCCCCEEEEECCCeEEeecccEEE
Confidence 9999999999 8999999999999 677888874 599999999999998 7899999999999994 99999
Q ss_pred eCCCchhHHHHHHhhcCCCCCHHHHHHHHHHHHHHHh-------cccCCCCcEEEEEEeCC-----eEEcCHHHHHHHHH
Q 026496 168 IGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVM-------EEKVTPNNVDIARVAPT-----YHLYTPSEVEAVIN 235 (237)
Q Consensus 168 ~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~-------~~~~~~~~iei~ii~~~-----~~~~~~~ei~~~~~ 235 (237)
+|+|++.++++||++|+++|+++||++++++||..+. ++++++.+++|++|+++ |++++++||+++++
T Consensus 156 ~Gsgs~~a~~~Le~~y~~~mt~eeai~la~~aL~~~~~~~~~~~~~~~~~~~iev~vv~~~g~~~~f~~l~~~ei~~~l~ 235 (248)
T 3mi0_A 156 MGGTTEPIANALKESYAENASLTDALRIAVAALRAGSADTSGGDQPTLGVASLEVAVLDANRPRRAFRRITGSALQALLV 235 (248)
T ss_dssp ESSCHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHC------------CCTTEEEEEEETTSSSCCEEECCHHHHHHTC-
T ss_pred ECccHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhhcccCcccccCCCcEEEEEEECCCCcccEEECCHHHHHHHHH
Confidence 9999999999999999999999999999999999998 66778899999999987 99999999999987
Q ss_pred h
Q 026496 236 R 236 (237)
Q Consensus 236 ~ 236 (237)
+
T Consensus 236 ~ 236 (248)
T 3mi0_A 236 D 236 (248)
T ss_dssp -
T ss_pred H
Confidence 5
No 21
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
Probab=100.00 E-value=1.8e-47 Score=313.67 Aligned_cols=200 Identities=24% Similarity=0.423 Sum_probs=185.7
Q ss_pred HHHhcCCcEEEEEeCCEEEEEEeccCCC-CCccCCcccceEEEcCcEEEEEecchhhHHHHHHHHHHHHHHHHHHhCCCC
Q 026496 29 EAIKLGSTAIGLKTKEGVVLAVEKRITS-PLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPM 107 (237)
Q Consensus 29 ~~~~~G~t~vgi~~~dgVvla~d~~~~~-~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i 107 (237)
+++++|+|+|||+++||||||+|+|.++ +++.+++.+||++|+++++++++|..+|++.|.++++.+++.|++++++++
T Consensus 3 ~~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~ 82 (217)
T 1yar_H 3 QTLETGTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRVNM 82 (217)
T ss_dssp ------CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCccEEEEEeCCEEEEEEcCCCCCCCEEecCccCCeEEeCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 4678999999999999999999999998 677788999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhcCCCCcCCCCCcceeeEEEEEcCCCCeEEEECCCCceeecceEEeCCCchhHHHHHHhhcCCCC
Q 026496 108 TVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDL 187 (237)
Q Consensus 108 ~~~~la~~ls~~~~~~~~~~~~~~~rP~~~~~iv~G~d~~g~~ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~ 187 (237)
+++.+++.+++.++.+ + .|||++++|||||| +||+||.+||+|++.+++++|+|+|++.++++||+.|+++|
T Consensus 83 ~v~~la~~l~~~~~~~--r-----~rp~~v~~lvaG~D-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~ 154 (217)
T 1yar_H 83 PIEAVATLLSNMLNQV--K-----YMPYMVQLLVGGID-TAPHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYSEKM 154 (217)
T ss_dssp CHHHHHHHHHHHHHHT--T-----TSCCCEEEEEEEES-SSEEEEEECTTCCEEEESEEEESTTHHHHHHHHHHHCCTTC
T ss_pred CHHHHHHHHHHHHHhc--C-----CCCceEEEEEEEEC-CCCEEEEECCCCCeEecCEEEEcCCHHHHHHHHHhhcccCC
Confidence 9999999999999653 2 48999999999999 89999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcccC-CCCcEEEEEEeC-C-eEEcCHHHHHHHHHh
Q 026496 188 TLQEAETIALSILKQVMEEKV-TPNNVDIARVAP-T-YHLYTPSEVEAVINR 236 (237)
Q Consensus 188 s~~ea~~l~~~~l~~~~~~~~-~~~~iei~ii~~-~-~~~~~~~ei~~~~~~ 236 (237)
|++||++++++||..+.++|. ++++++|++|++ + +++++++|+++++++
T Consensus 155 s~eea~~la~~al~~~~~rd~~s~~~i~v~vi~~~~g~~~~~~~ei~~~~~~ 206 (217)
T 1yar_H 155 TVDEGVDLVIRAISAAKQRDSASGGMIDVAVITRKDGYVQLPTDQIESRIRK 206 (217)
T ss_dssp CHHHHHHHHHHHHHHHHHHCTTCCSCCEEEEEETTTEEEECCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEECCCCEEEcCHHHHHHHHHH
Confidence 999999999999999999986 678899999999 6 999999999999875
No 22
>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=2e-47 Score=313.77 Aligned_cols=197 Identities=25% Similarity=0.430 Sum_probs=187.1
Q ss_pred CCcEEEEEeCCEEEEEEeccCCCC-CccCCcccceEEEcCcEEEEEecchhhHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Q 026496 34 GSTAIGLKTKEGVVLAVEKRITSP-LLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVEST 112 (237)
Q Consensus 34 G~t~vgi~~~dgVvla~d~~~~~~-~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l 112 (237)
|+|+|||+++||||||+|+|.+++ ++.+++.+||++|+++++|+++|..+|++.|.++++.+++.|++.++++++++.+
T Consensus 1 Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~l 80 (219)
T 3h4p_a 1 MTTTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLIAEAKLYKMRTGRNIPPLAC 80 (219)
T ss_dssp -CCEEEEEETTEEEEECCCCEEETTEEEETTCCCEEEEETTEEEECCSCHHHHHHHHHHHHHHHHHHHHHTSSCCCHHHH
T ss_pred CccEEEEEECCEEEEEEcCCcccCCEeeccccceeEEecCCEEEEeeEcHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 799999999999999999999984 6678899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCcCCCCCcceeeEEEEEcC-CCCeEEEECCCCceeecc-eEEeCCCchhHHHHHHhhcCCCCCHH
Q 026496 113 TQALCDLALRFGEGDEESMSRPFGVSLLIAGSDE-NGPSLYYTDPSGTFWQCN-AKAIGSGSEGADSSLQEQYNKDLTLQ 190 (237)
Q Consensus 113 a~~ls~~~~~~~~~~~~~~~rP~~~~~iv~G~d~-~g~~ly~vd~~G~~~~~~-~~a~G~g~~~~~~~Le~~~~~~~s~~ 190 (237)
++++++.++.+ + .|||++++||||||+ +||+||.+||+|++.+++ ++++|+|++.++++||+.|+++|+++
T Consensus 81 a~~l~~~~~~~--~-----~~P~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~ms~e 153 (219)
T 3h4p_a 81 ATLLSNILHSS--R-----MFPFLTQIIIGGYDLLEGAKLFSLDPLGGMNEEKTFTATGSGSPIAYGVLEAGYDRDMSVE 153 (219)
T ss_dssp HHHHHHHHHHT--T-----TTTCCCCCEEEEEETTTEEEEEEECSSCCEEECSSEEEESTTHHHHHHHHHTSCCTTCCHH
T ss_pred HHHHHHHHHHh--c-----CCCceEEEEEEEEeCCCCcEEEEECCCCceEecCCEEEEcCCHHHHHHHHHHhcCCCCCHH
Confidence 99999999776 2 389999999999998 789999999999999999 99999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccC-CCCcEEEEEEeCC-eEEcCHHHHHHHHHhC
Q 026496 191 EAETIALSILKQVMEEKV-TPNNVDIARVAPT-YHLYTPSEVEAVINRL 237 (237)
Q Consensus 191 ea~~l~~~~l~~~~~~~~-~~~~iei~ii~~~-~~~~~~~ei~~~~~~~ 237 (237)
||++++++||..+.++|. ++++++|++|+++ +++++++||+++|.++
T Consensus 154 ea~~la~~al~~~~~rd~~sg~~i~v~vi~~~g~~~l~~~ei~~~l~~~ 202 (219)
T 3h4p_a 154 EGIKLALNALKSAMERDTFSGNGISLAVITKDGVKIFEDEEIEKILDSM 202 (219)
T ss_dssp HHHHHHHHHHHHHHTSCSSCCSCCCEEEEETTEEEECCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCeEEcCHHHHHHHHHHh
Confidence 999999999999999987 6789999999999 9999999999999864
No 23
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4
Probab=100.00 E-value=8.2e-47 Score=306.52 Aligned_cols=196 Identities=27% Similarity=0.465 Sum_probs=187.0
Q ss_pred CcEEEEEeCCEEEEEEeccCCC-CCccCCcccceEEEcCcEEEEEecchhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 026496 35 STAIGLKTKEGVVLAVEKRITS-PLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTT 113 (237)
Q Consensus 35 ~t~vgi~~~dgVvla~d~~~~~-~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 113 (237)
||+|||+++||||||+|+|.++ +++.+++.+||++|+++++++++|..+|++.|.++++.+++.|+++++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (202)
T 1j2q_H 1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIA 80 (202)
T ss_dssp CCEEEEEETTEEEEEEECCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEECCCcCcCCEEeeccccCEEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 6899999999999999999998 677788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCcCCCCCcceeeEEEEEcCCCCeEEEECCCCceeecc-eEEeCCCchhHHHHHHhhcCCCCCHHHH
Q 026496 114 QALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCN-AKAIGSGSEGADSSLQEQYNKDLTLQEA 192 (237)
Q Consensus 114 ~~ls~~~~~~~~~~~~~~~rP~~~~~iv~G~d~~g~~ly~vd~~G~~~~~~-~~a~G~g~~~~~~~Le~~~~~~~s~~ea 192 (237)
+.+++.++.+ + .|||++++|+||||++||+||.+||+|++.+++ ++++|+|++.++++||+.|+++||++||
T Consensus 81 ~~l~~~~~~~--r-----~rp~~~~~lvaG~D~~gp~Ly~id~~G~~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eea 153 (202)
T 1j2q_H 81 TLTSNLLNSY--R-----YFPYLVQLLIGGIDSEGKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEA 153 (202)
T ss_dssp HHHHHHHHHT--T-----TSCCCEEEEEEEEETTEEEEEEECTTCCEEEESSEEEESTTHHHHHHHHHHHCCTTCCHHHH
T ss_pred HHHHHHHHhh--C-----CCCceEEEEEEEEeCCCCEEEEECCCCCeeecCCEEEEcCCHHHHHHHHHhhcCCCcCHHHH
Confidence 9999999663 2 489999999999999899999999999999999 9999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccC-CCCcEEEEEEeCC-eEEcCHHHHHHHHHhC
Q 026496 193 ETIALSILKQVMEEKV-TPNNVDIARVAPT-YHLYTPSEVEAVINRL 237 (237)
Q Consensus 193 ~~l~~~~l~~~~~~~~-~~~~iei~ii~~~-~~~~~~~ei~~~~~~~ 237 (237)
++++++||..+.++|. +++++++++|+++ +++++++|++++++++
T Consensus 154 ~~la~~al~~~~~~d~~s~~~i~v~vi~~~g~~~l~~~ei~~~~~~~ 200 (202)
T 1j2q_H 154 VELAVRAIYSAMKRDSASGDGIDVVKITEDEFYQYSPEEVEQILAKF 200 (202)
T ss_dssp HHHHHHHHHHHHTTCTTSCSCEEEEEECSSCEEECHHHHHHHHGGGT
T ss_pred HHHHHHHHHHHHhcCCCCCCcEEEEEEeCCCeEEeCHHHHHHHHHHh
Confidence 9999999999999986 6788999999999 9999999999998764
No 24
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* 4b4t_5
Probab=100.00 E-value=1.3e-46 Score=319.19 Aligned_cols=214 Identities=21% Similarity=0.347 Sum_probs=185.7
Q ss_pred CCCCcccch------hhHHHHHhcCCcEEEEEeCCEEEEEEeccCCC-CCccCCcccceEEEcCcEEEEEecchhhHHHH
Q 026496 16 SPEGRLFQV------EYAIEAIKLGSTAIGLKTKEGVVLAVEKRITS-PLLEPSSVEKIMEIDEHIGCAMSGLIADARTL 88 (237)
Q Consensus 16 sp~G~~~qv------eya~~~~~~G~t~vgi~~~dgVvla~d~~~~~-~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l 88 (237)
+|+.-+.+. .++..++++|+|+|||+++||||||+|+|.++ .++.+++.+||++|+++++++++|..+|++.|
T Consensus 51 ~p~~~~~~~~~~~~~~~~~~~v~~GtT~vgik~~dGVVlAaD~r~t~G~li~~~~~~KI~~I~d~i~~~~aG~~AD~~~l 130 (287)
T 3nzj_K 51 SPQQFLRAHTDDSRNPDCKIKIAHGTTTLAFRFQGGIIVAVDSRATAGNWVASQTVKKVIEINPFLLGTMAGGAADCQFW 130 (287)
T ss_dssp -------------------------CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECEECHHHHHHH
T ss_pred CHHHHHHHhcccccccchhhheccCceEEEEEECCEEEEEEccccccCceeecCCcceEEEEcCcEEEEecCCHHHHHHH
Confidence 555555543 26788999999999999999999999999998 66778899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCcCCCCCcceeeEEEEEc-CCCCeEEEECCCCceeecceEE
Q 026496 89 VEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSD-ENGPSLYYTDPSGTFWQCNAKA 167 (237)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~~~~iv~G~d-~~g~~ly~vd~~G~~~~~~~~a 167 (237)
.++++.+++.|+++++++++++.++++++++++.|++ +||++++|||||| ++||+||.+||+|++.++++++
T Consensus 131 ~~~lr~~~~~y~~~~~~~isv~~la~~ls~~l~~~r~-------~p~~v~~lvaG~D~~~gp~Ly~iDp~G~~~~~~~~A 203 (287)
T 3nzj_K 131 ETWLGSQCRLHELREKERISVAAASKILSNLVYQYKG-------AGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFC 203 (287)
T ss_dssp HHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTT-------SCCCEEEEEEEEETTTEEEEEEEETTCCEEECSEEE
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhcC-------CCceEEEEEEEEcCCCCCEEEEECCCceEEEcCeEE
Confidence 9999999999999999999999999999999976643 5899999999999 5789999999999999999999
Q ss_pred eCCCchhHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhcccC-CCCcEEEEEEeCC-eEEcCHHHHHHHHHh
Q 026496 168 IGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKV-TPNNVDIARVAPT-YHLYTPSEVEAVINR 236 (237)
Q Consensus 168 ~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~~~-~~~~iei~ii~~~-~~~~~~~ei~~~~~~ 236 (237)
+|+|++.++++||+.|+++|+++||++++++||..+.++|. ++++++|++|+++ +++++++||++++.+
T Consensus 204 iGsgs~~a~~~Le~~y~~dms~eEAi~la~~aL~~a~~rD~~sg~~i~V~vItkdg~~~l~~~ev~~~l~~ 274 (287)
T 3nzj_K 204 VGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRDAYSGGSVNLYHVTEDGWIYHGNHDVGELFWK 274 (287)
T ss_dssp ESTTHHHHHHHHHTSCCTTCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTEEEEEEEEEHHHHHHH
T ss_pred EecchHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhCcCCCCceEEEEEeCCCEEEeCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999997 6788999999999 999999999998764
No 25
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H
Probab=100.00 E-value=2.3e-46 Score=318.49 Aligned_cols=227 Identities=19% Similarity=0.182 Sum_probs=174.1
Q ss_pred CCCCCCCceeCCCCcc-----cc--hhhHHHHHhcCCcEEEEEeCCEEEEEEeccCCC-CCccCCcccceEEEcCcEEEE
Q 026496 6 TEYDRGVNTFSPEGRL-----FQ--VEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITS-PLLEPSSVEKIMEIDEHIGCA 77 (237)
Q Consensus 6 ~~yd~~~~~fsp~G~~-----~q--veya~~~~~~G~t~vgi~~~dgVvla~d~~~~~-~~~~~~~~~ki~~i~~~i~~~ 77 (237)
++|+.-+...+|+.-. ++ +|||++ +++|+|+|||+++||||||+|+|.++ .++.+++.+||++|+++++|+
T Consensus 23 ~~f~~~~~~~~~~~l~~~~~~~~~~~~ya~~-v~~GtTiVgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~i~d~i~~~ 101 (291)
T 2jay_A 23 SSFTDFLRRQAPELLPASISGGAPLAGGDAQ-LPHGTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATG 101 (291)
T ss_dssp ------------------------------------CCEEEEEETTEEEEEECCC--------CCCCCCEEEEETTEEEE
T ss_pred ccHHHHhhhcChhhccccccccCcCcccccc-ccCCcEEEEEEECCEEEEEECCCccCCCeeecCCcccEEEeCCcEEEE
Confidence 4455555666666422 22 689999 99999999999999999999999998 467788899999999999999
Q ss_pred EecchhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCcCCCCCcceeeEEEEEcCC-C-----CeE
Q 026496 78 MSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDEN-G-----PSL 151 (237)
Q Consensus 78 ~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~~~~iv~G~d~~-g-----~~l 151 (237)
++|..+|++.|.++++.+++.|++.++.+++++.+++.++++++.+++ . ++|||++++||||||++ + |+|
T Consensus 102 ~aG~~aD~~~l~~~lr~~~~~y~~~~~~~i~v~~la~~la~~l~~~~~-~---~~rpf~v~~lvaG~D~~g~~~~~~p~L 177 (291)
T 2jay_A 102 IAGTAAVAVEFARLYAVELEHYEKLEGVPLTFAGKINRLAIMVRGNLA-A---AMQGLLALPLLAGYDIHASDPQSAGRI 177 (291)
T ss_dssp EESCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHTCHH-H---HHHTCCCEEEEEEECTTCSCSTTCEEE
T ss_pred EcccHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHhhh-h---hccccceeEEEEEEeCCCCcCCCCCEE
Confidence 999999999999999999999999999999999999999999988765 3 57999999999999975 4 899
Q ss_pred EEECCCCcee--ecceEEeCCCchhHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhcccCCCCcE--------EEEEEeCC
Q 026496 152 YYTDPSGTFW--QCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNV--------DIARVAPT 221 (237)
Q Consensus 152 y~vd~~G~~~--~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~~~~~~~i--------ei~ii~~~ 221 (237)
|.+||+|++. +++++++|+|+++++++||+.|+++|+++||++++++||..+.++|+..+++ +|++|+++
T Consensus 178 y~iDp~G~~~e~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eEAi~la~~aL~~a~~~D~~sg~~e~vr~~~~~v~vi~~d 257 (291)
T 2jay_A 178 VSFDAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAVIIDAD 257 (291)
T ss_dssp EEECTTSCEEECSSSEEEESTTHHHHHHHHHHHGGGCCSHHHHHHHHHHHHHHC----------------CCEEEEEETT
T ss_pred EEECCCCcEEecCCCEEEEecCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhhCCCCCCcccccccCCEEEEEECC
Confidence 9999999998 8999999999999999999999999999999999999999999998865555 69999999
Q ss_pred -eEEcCHHHHHHHHHhC
Q 026496 222 -YHLYTPSEVEAVINRL 237 (237)
Q Consensus 222 -~~~~~~~ei~~~~~~~ 237 (237)
+++++++||+++++++
T Consensus 258 g~~~l~~~ei~~~~~~~ 274 (291)
T 2jay_A 258 GAVDVPESRIAELARAI 274 (291)
T ss_dssp EEEECCHHHHHHHHHHC
T ss_pred CeEEcCHHHHHHHHHHH
Confidence 9999999999998764
No 26
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H
Probab=100.00 E-value=5.7e-46 Score=316.34 Aligned_cols=207 Identities=22% Similarity=0.243 Sum_probs=193.4
Q ss_pred HHHHHhcCCcEEEEEeCCEEEEEEeccCCC-CCccCCcccceEEEcCcEEEEEecchhhHHHHHHHHHHHHHHHHHHhCC
Q 026496 27 AIEAIKLGSTAIGLKTKEGVVLAVEKRITS-PLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGE 105 (237)
Q Consensus 27 a~~~~~~G~t~vgi~~~dgVvla~d~~~~~-~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~ 105 (237)
|++|+++|+|+|||+++||||||+|+|.++ +++.+++.+||++|+++++|+++|..+|++.|.++++.+++.|++.+++
T Consensus 58 a~~Av~~GtTiVgIk~kdGVVlAaD~r~t~G~li~~~~~~KI~~I~~~i~~~~aG~~aD~~~l~~~~r~~~~~y~~~~g~ 137 (294)
T 1q5r_H 58 SGDLAPHGTTIVALTYKGGVLLAGDRRATQGNLIASRDVEAVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGV 137 (294)
T ss_dssp --CCSCBCCCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHhcCceEEEEEECCEEEEEEcCccccCceeecCCcceEEEECCcEEEEEeecHHHHHHHHHHHHHHHHHhhHhhCC
Confidence 889999999999999999999999999998 6777889999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCCcCCCCCcceeeEEEEEcCC-C-----CeEEEECCCCceeec--ceEEeCCCchhHHH
Q 026496 106 PMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDEN-G-----PSLYYTDPSGTFWQC--NAKAIGSGSEGADS 177 (237)
Q Consensus 106 ~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~~~~iv~G~d~~-g-----~~ly~vd~~G~~~~~--~~~a~G~g~~~~~~ 177 (237)
+++++.+++.|+++++.++++ .+|||++++||+|||++ | |+||.+||+|++.++ +++++|+|++++++
T Consensus 138 ~isv~~la~~la~~l~~~~~~----~~rp~~v~lLvaG~D~~~g~~~~~p~Ly~iDp~G~~~e~~~~~~AiGsgs~~a~~ 213 (294)
T 1q5r_H 138 PLTFDGKANRLASMVRGNLGA----AMQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKS 213 (294)
T ss_dssp CCCHHHHHHHHHHHHHHHHHH----HTTTTCEEEEEEEECTTCSCTTSCEEEEEECSSSCEEECCSSEEEESTTHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhh----hcCCcceEEEEEEEeCCCCcCCCCCEEEEECCCCeEEecCCCeEEEecCcHHHHH
Confidence 999999999999999988875 47999999999999976 6 899999999999999 89999999999999
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHHHHHhcccCC-CC--cE-----EEEEEeCC-eEEcCHHHHHHHHHhC
Q 026496 178 SLQEQYNKDLTLQEAETIALSILKQVMEEKVT-PN--NV-----DIARVAPT-YHLYTPSEVEAVINRL 237 (237)
Q Consensus 178 ~Le~~~~~~~s~~ea~~l~~~~l~~~~~~~~~-~~--~i-----ei~ii~~~-~~~~~~~ei~~~~~~~ 237 (237)
+||+.|+++|+++||++++++||..+.++|.. ++ ++ +|++|+++ +++++++|++++++++
T Consensus 214 ~Le~~y~~~ms~eEAi~la~~aL~~a~~rD~~sG~~~~ir~i~~ev~vI~~~g~~~l~~~ei~~~l~~i 282 (294)
T 1q5r_H 214 ALKKIYSPDSDEETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQAGAVHVSEETTSELARRI 282 (294)
T ss_dssp HHHHHCCSSCCHHHHHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEEEEEETTEEEECCHHHHHHHHHHH
T ss_pred HHHHhccCCCCHHHHHHHHHHHHHHHHhhccccCCchhhcccCCEEEEEECCCEEEcCHHHHHHHHHHH
Confidence 99999999999999999999999999999874 33 25 99999999 9999999999998753
No 27
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M
Probab=100.00 E-value=6e-47 Score=310.98 Aligned_cols=200 Identities=20% Similarity=0.244 Sum_probs=188.5
Q ss_pred HHHHhcCCcEEEEEeCCEEEEEEeccCCC-CCccCCcccceEEEcCcEEEEEecchhhHHHHHHHHHHHHHHHHH-HhCC
Q 026496 28 IEAIKLGSTAIGLKTKEGVVLAVEKRITS-PLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRF-SYGE 105 (237)
Q Consensus 28 ~~~~~~G~t~vgi~~~dgVvla~d~~~~~-~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~-~~~~ 105 (237)
++|+++|+|+|||+++||||||+|+|.++ .++.+++.+||++|+++++++++|..+|++.|.++++.+++.|++ .+++
T Consensus 2 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (219)
T 1iru_N 2 QNPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGH 81 (219)
T ss_dssp CSCCSEECCCEEEEETTEEEEEEECCEEETTEEEECSCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCSSC
T ss_pred CCCccCCceEEEEEeCCEEEEEECCccccCcEEecCCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 36789999999999999999999999998 667788999999999999999999999999999999999999998 9999
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCCcCCCCCcceeeEEEEEcCCCCeEEEECCCCceeecceEEeCCCchhHHHHHHhhcCC
Q 026496 106 PMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNK 185 (237)
Q Consensus 106 ~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~~~~iv~G~d~~g~~ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~ 185 (237)
+++++.+++.+++.+ |+++. +.|||++++||||+|++||+||.+||+|++.+++++++|+|++.++++||+.|++
T Consensus 82 ~~~v~~la~~l~~~l--y~~r~---~~~P~~v~~lvaG~D~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~ 156 (219)
T 1iru_N 82 SYSPRAIHSWLTRAM--YSRRS---KMNPLWNTMVIGGYADGESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEK 156 (219)
T ss_dssp CCCHHHHHHHHHHHH--HHHHH---TTCCCCEEEEEEEEETTEEEEEEECSSCCEEECSEEECTTHHHHTHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHHH--HHhcc---cCCCceEEEEEEEEECCCCEEEEECCCCCeEECCeEEECccHHHHHHHHHhhcCC
Confidence 999999999999999 55555 6799999999999998899999999999999999999999999999999999999
Q ss_pred --CCCHHHHHHHHHHHHHHHhcccC-CCCcEEEEEEeCC-eEEcCHHHHHH
Q 026496 186 --DLTLQEAETIALSILKQVMEEKV-TPNNVDIARVAPT-YHLYTPSEVEA 232 (237)
Q Consensus 186 --~~s~~ea~~l~~~~l~~~~~~~~-~~~~iei~ii~~~-~~~~~~~ei~~ 232 (237)
+||++||++++++||..+.+++. ++++++|++|+++ ++.++++|++.
T Consensus 157 ~~~mt~eea~~l~~~al~~~~~~d~~sg~~i~v~vi~~~g~~~~~~~~i~~ 207 (219)
T 1iru_N 157 QPVLSQTEARDLVERCMRVLYYRDARSYNRFQTATVTEKGVEIEGPLSTET 207 (219)
T ss_dssp CSCCCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTEEEEEEEECCCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEcCCCEEEcCCeeccc
Confidence 99999999999999999999987 6889999999999 99999888764
No 28
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K
Probab=100.00 E-value=7.7e-46 Score=301.25 Aligned_cols=195 Identities=22% Similarity=0.353 Sum_probs=186.0
Q ss_pred CcEEEEEeCCEEEEEEeccCCC-CCccCCcccceEEEcCcEEEEEecchhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 026496 35 STAIGLKTKEGVVLAVEKRITS-PLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTT 113 (237)
Q Consensus 35 ~t~vgi~~~dgVvla~d~~~~~-~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 113 (237)
+|+|||+++||||||+|+|.++ +++.+++.+||++|+++++++++|..+|++.|.++++.+++.|+++++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (204)
T 1iru_L 1 TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAAS 80 (204)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCCEEEcCcccceEEcCCCEEEEccCcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 6899999999999999999998 677788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCcCCCCCcceeeEEEEEcCCCCeEEEECCCCceeecceEEeCCCchhHHHHHHhhcCCCCCHHHHH
Q 026496 114 QALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAE 193 (237)
Q Consensus 114 ~~ls~~~~~~~~~~~~~~~rP~~~~~iv~G~d~~g~~ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~ 193 (237)
+.+++.++.+++ +||++++||||||++||+||.+||+|++.+++++|+|+|++.++++||+.|+++||++||+
T Consensus 81 ~~l~~~~~~~r~-------~~~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~eea~ 153 (204)
T 1iru_L 81 KLLANMVYQYKG-------MGLSMGTMICGWDKRGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAY 153 (204)
T ss_dssp HHHHHHHHTTTT-------SCCCBEEEEEEECSSSEEEEEEESSSCEEECSEEEESTTHHHHHHHHHTTCCTTCCHHHHH
T ss_pred HHHHHHHHHhCC-------CCeeEEEEEEEEeCCCCEEEEECCCCcEEEeCCEEEEcCHHHHHHHHhccCCCCCCHHHHH
Confidence 999999976642 5899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccC-CCCcEEEEEEeCC-eEEcCHHHHHHHHHh
Q 026496 194 TIALSILKQVMEEKV-TPNNVDIARVAPT-YHLYTPSEVEAVINR 236 (237)
Q Consensus 194 ~l~~~~l~~~~~~~~-~~~~iei~ii~~~-~~~~~~~ei~~~~~~ 236 (237)
+++++||..+.++|. ++++++|++|+++ ++.++++|+++++++
T Consensus 154 ~l~~~al~~~~~rd~~s~~~i~v~vi~~~g~~~l~~~ei~~~~~~ 198 (204)
T 1iru_L 154 DLARRAIYQATYRDAYSGGAVNLYHVREDGWIRVSSDNVADLHEK 198 (204)
T ss_dssp HHHHHHHHHHHHHBTTCCSEEEEEEECSSCEEEEEEEEHHHHHHH
T ss_pred HHHHHHHHHHHHhCccCCCceEEEEEeCCceEEeCHHHHHHHHHH
Confidence 999999999999986 7889999999999 999999999999875
No 29
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...
Probab=100.00 E-value=3.4e-45 Score=299.11 Aligned_cols=195 Identities=20% Similarity=0.370 Sum_probs=185.5
Q ss_pred CcEEEEEeCCEEEEEEeccCCC-CCccCCcccceEEEcCcEEEEEecchhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 026496 35 STAIGLKTKEGVVLAVEKRITS-PLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTT 113 (237)
Q Consensus 35 ~t~vgi~~~dgVvla~d~~~~~-~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 113 (237)
+|+|||+++||||||+|+|.++ +++.+++.+||++|+++++++++|..+|++.|.++++.+++.|+++++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (212)
T 1ryp_L 1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAAS 80 (212)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCCeEecCcccceeeeCCcEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 6899999999999999999998 677788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCcCCCCCcceeeEEEEEc-CCCCeEEEECCCCceeecceEEeCCCchhHHHHHHhhcCCCCCHHHH
Q 026496 114 QALCDLALRFGEGDEESMSRPFGVSLLIAGSD-ENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEA 192 (237)
Q Consensus 114 ~~ls~~~~~~~~~~~~~~~rP~~~~~iv~G~d-~~g~~ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea 192 (237)
+++++.++.|++ .||++++|+|||| ++||+||.+||+|++.+++++|+|+|++.++++||+.|+++||++||
T Consensus 81 ~~l~~~~~~~~~-------~p~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea 153 (212)
T 1ryp_L 81 KILSNLVYQYKG-------AGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDA 153 (212)
T ss_dssp HHHHHHHHHTTT-------SCCCBEEEEEEEETTTEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHHHCCTTCCHHHH
T ss_pred HHHHHHHHhhCC-------CCceEEEEEEEEeCCCCCEEEEEcCCceeEecCCEEEcCCHHHHHHHHHhhCCCCCCHHHH
Confidence 999999987764 4899999999999 56899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccC-CCCcEEEEEEeCC-eEEcCHHHHHHHHHh
Q 026496 193 ETIALSILKQVMEEKV-TPNNVDIARVAPT-YHLYTPSEVEAVINR 236 (237)
Q Consensus 193 ~~l~~~~l~~~~~~~~-~~~~iei~ii~~~-~~~~~~~ei~~~~~~ 236 (237)
++++++||..+.+++. ++++++|++|+++ +++++++|+++++.+
T Consensus 154 ~~la~~al~~~~~rd~~s~~~i~v~vi~~~g~~~~~~~ei~~~~~~ 199 (212)
T 1ryp_L 154 LYLGKRSILAAAHRDAYSGGSVNLYHVTEDGWIYHGNHDVGELFWK 199 (212)
T ss_dssp HHHHHHHHHHHHHHBTTCCSEEEEEEEETTEEEEEEEEEHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCceEEEEEcCCceEEECHHHHHHHHHH
Confidence 9999999999999986 6889999999999 999999999999764
No 30
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4
Probab=100.00 E-value=8.4e-45 Score=301.12 Aligned_cols=198 Identities=23% Similarity=0.253 Sum_probs=186.1
Q ss_pred CcEEEEEeCCEEEEEEeccCCC-CCccCCcccceEEEcCcEEEEEecchhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 026496 35 STAIGLKTKEGVVLAVEKRITS-PLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTT 113 (237)
Q Consensus 35 ~t~vgi~~~dgVvla~d~~~~~-~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 113 (237)
+|+|||+++||||||+|+|.++ +++.+++.+||++|+++++|+++|..+|++.|.++++.+++.|++.++++++++.++
T Consensus 1 tT~vgi~~~dgVVlaaD~r~~~g~l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (235)
T 1q5q_H 1 TTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKA 80 (235)
T ss_dssp CCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEECCCCCcCCEEecCCcCcEEEeCCcEEEEcCCcHHHHHHHHHHHHHHHHHhHHHhCCCCCHHHHH
Confidence 6899999999999999999998 677788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCcCCCCCcceeeEEEEEcCC-C-----CeEEEECCCCceeec--ceEEeCCCchhHHHHHHhhcCC
Q 026496 114 QALCDLALRFGEGDEESMSRPFGVSLLIAGSDEN-G-----PSLYYTDPSGTFWQC--NAKAIGSGSEGADSSLQEQYNK 185 (237)
Q Consensus 114 ~~ls~~~~~~~~~~~~~~~rP~~~~~iv~G~d~~-g-----~~ly~vd~~G~~~~~--~~~a~G~g~~~~~~~Le~~~~~ 185 (237)
+.|+++++.++++ .+|||++++||||||++ | |+||.+||+|++.++ +++++|+|++.++++||+.|++
T Consensus 81 ~~l~~~~~~~~~~----~~rp~~v~~lvaG~D~~~g~~~~~p~Ly~idp~G~~~~~~~~~~aiGsgs~~a~~~Le~~~~~ 156 (235)
T 1q5q_H 81 NRLASMVRGNLGA----AMQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSP 156 (235)
T ss_dssp HHHHHHHHTTHHH----HTTTCCEEEEEEEECTTCSSTTSCEEEEEECTTSCEEECCSSEEEESTTHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHHHh----hhcccceEEEEEEEECCCCccCCCCEEEEECCCCceEEeCCCeEEECCCHHHHHHHHHhhcCC
Confidence 9999999888765 46999999999999986 7 899999999999999 9999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcccCC-CC--cE-----EEEEEeCC-eEEcCHHHHHHHHHh
Q 026496 186 DLTLQEAETIALSILKQVMEEKVT-PN--NV-----DIARVAPT-YHLYTPSEVEAVINR 236 (237)
Q Consensus 186 ~~s~~ea~~l~~~~l~~~~~~~~~-~~--~i-----ei~ii~~~-~~~~~~~ei~~~~~~ 236 (237)
+||++||++++++||..+.++|.. ++ ++ +|++|+++ +++++++|+++++++
T Consensus 157 ~ms~eeA~~la~~al~~a~~~d~~sg~~~~i~~~~~ev~vi~~~g~~~l~~~ei~~~~~~ 216 (235)
T 1q5q_H 157 DSDEETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQAGAVHVSEETTSELARR 216 (235)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEEEEEETTEEEECCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhhCcccCCcccccccccEEEEEeCCCeEEeCHHHHHHHHHH
Confidence 999999999999999999999874 33 23 99999999 999999999999875
No 31
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...
Probab=100.00 E-value=2.7e-46 Score=309.83 Aligned_cols=201 Identities=18% Similarity=0.294 Sum_probs=188.9
Q ss_pred HHHHhcCCcEEEEEeCCEEEEEEeccCCC-CCccCCcccceEEEcCcEEEEEecchhhHHHHHHHHHHHHHHHHH-----
Q 026496 28 IEAIKLGSTAIGLKTKEGVVLAVEKRITS-PLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRF----- 101 (237)
Q Consensus 28 ~~~~~~G~t~vgi~~~dgVvla~d~~~~~-~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~----- 101 (237)
++|+++|+|+|||+++||||||+|+|.++ .++.+++.+||++|+++++|+++|..+|++.|.++++.+++.|++
T Consensus 2 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (233)
T 1ryp_N 2 QQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLA 81 (233)
T ss_dssp CCCCEEECCEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHTTCTTT
T ss_pred cccccCCceEEEEEECCEEEEEEcCccccCCeeecCCcCceEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHhhccchh
Confidence 36789999999999999999999999988 567788999999999999999999999999999999999999999
Q ss_pred HhCCCCCHHHHHHHHHHHHHHhcCCCCcCCCCCcceeeEEEEEcCC-CCeEEEECCCCceeecceEEeCCCchhHHHHHH
Q 026496 102 SYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDEN-GPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQ 180 (237)
Q Consensus 102 ~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~~~~iv~G~d~~-g~~ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le 180 (237)
+++++++++.+++.+++.+ |+++. +.|||++++||||+|++ ||+||.+||+|++.+++++++|+|++.++++||
T Consensus 82 ~~~~~~~v~~la~~l~~~l--y~~r~---~~~P~~v~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le 156 (233)
T 1ryp_N 82 DAEEALEPSYIFEYLATVM--YQRRS---KMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLR 156 (233)
T ss_dssp TTTTSCCHHHHHHHHHHHH--HHHHH---TTCCCCEEEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHHHHHHHHT
T ss_pred hcCCCCCHHHHHHHHHHHH--HHhcC---CCCCceEEEEEEEEcCCCCEEEEEECCCcCeEEcCEEEECcCHHHHHHHHH
Confidence 8999999999999999999 56665 67999999999999986 899999999999999999999999999999999
Q ss_pred hhcCC-----CCCHHHHHHHHHHHHHHHhcccC-CCCcEEEEEEeCC--eEEcCHHHHHHH
Q 026496 181 EQYNK-----DLTLQEAETIALSILKQVMEEKV-TPNNVDIARVAPT--YHLYTPSEVEAV 233 (237)
Q Consensus 181 ~~~~~-----~~s~~ea~~l~~~~l~~~~~~~~-~~~~iei~ii~~~--~~~~~~~ei~~~ 233 (237)
+.|++ +||++||++++++||..+.++|. ++++++|++|+++ ++.++++|++++
T Consensus 157 ~~~~~~~~~~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~~g~~~~~~~~i~~~ 217 (233)
T 1ryp_N 157 KVVDRESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTGLTFKKNLQVENM 217 (233)
T ss_dssp TTCSSGGGGGGCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTTEEEEEEEEECCSC
T ss_pred HhhccccccCCCCHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEECCCCeEEcChHhcccc
Confidence 99999 99999999999999999999987 6889999999998 999998887654
No 32
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N
Probab=100.00 E-value=6.4e-45 Score=296.03 Aligned_cols=193 Identities=20% Similarity=0.315 Sum_probs=182.7
Q ss_pred CcEEEEEeCCEEEEEEeccCCCC-CccCCcccceEEEcCcEEEEEecchhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 026496 35 STAIGLKTKEGVVLAVEKRITSP-LLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTT 113 (237)
Q Consensus 35 ~t~vgi~~~dgVvla~d~~~~~~-~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 113 (237)
||+|||+++||||||+|+|.+++ ++.+++.+||++|+++++++++|..+|++.|.++++.+++.|+++++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (205)
T 1iru_H 1 TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAA 80 (205)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEecCCcCceEEcCCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 68999999999999999999985 77788899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCcCCCCCcceeeEEEEEcC-CCCeEEEECCCCceeecceEEeCCCchhHHHHHHhhcCCCCCHHHH
Q 026496 114 QALCDLALRFGEGDEESMSRPFGVSLLIAGSDE-NGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEA 192 (237)
Q Consensus 114 ~~ls~~~~~~~~~~~~~~~rP~~~~~iv~G~d~-~g~~ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea 192 (237)
+.+++.++.|+ +||++++|+||||+ +||+||.+||+|++.+++++++|+|++.++++||++|+++||++||
T Consensus 81 ~~l~~~~~~~~--------~p~~~~~lvaG~D~~~gp~ly~~d~~G~~~~~~~~a~Gsgs~~a~~~Le~~~~~~~s~eea 152 (205)
T 1iru_H 81 SLFKEMCYRYR--------EDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKEEC 152 (205)
T ss_dssp HHHHHHHHHTT--------TTCCEEEEEEEEETTTEEEEEEECTTSCCEECSEEEESGGGGGGHHHHHHHCCTTCCHHHH
T ss_pred HHHHHHHHhcC--------cCccEEEEEEEEeCCCCCEEEEECCCCcEEecCEEEECCCHHHHHHHHHHhcCCCCCHHHH
Confidence 99999997664 28999999999997 6899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccC-CCCcEEEEEEeCC---eEEcCHHHHHHHHH
Q 026496 193 ETIALSILKQVMEEKV-TPNNVDIARVAPT---YHLYTPSEVEAVIN 235 (237)
Q Consensus 193 ~~l~~~~l~~~~~~~~-~~~~iei~ii~~~---~~~~~~~ei~~~~~ 235 (237)
++++++||..+.+++. ++++++|++|+++ ++.++++||+++++
T Consensus 153 ~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~l~~~ei~~~~~ 199 (205)
T 1iru_H 153 LQFTANALALAMERDGSSGGVIRLAAIAESGVERQVLLGDQIPKFAV 199 (205)
T ss_dssp HHHHHHHHHHHHHHBTTCCSCEEEEEEETTEEEEEEECGGGSCCCCC
T ss_pred HHHHHHHHHHHHHhccccCCcEEEEEEeCCCeEEEEeChHHhhHHHh
Confidence 9999999999999986 6889999999999 78899999987764
No 33
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* 4b4t_2
Probab=100.00 E-value=4e-44 Score=300.49 Aligned_cols=192 Identities=25% Similarity=0.355 Sum_probs=173.4
Q ss_pred HHHHHhcCCcEEEEEeCCEEEEEEeccCCC-CCccCCcccceEEEcCcEEEEEecchhhHHHHHHHHHHHHHHHHHHhCC
Q 026496 27 AIEAIKLGSTAIGLKTKEGVVLAVEKRITS-PLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGE 105 (237)
Q Consensus 27 a~~~~~~G~t~vgi~~~dgVvla~d~~~~~-~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~ 105 (237)
.++|+++|+|+|||+++||||||+|+|.++ .++.+++.+||++|+++++|+++|..+|++.|.++++.+++.|++.+++
T Consensus 22 ~~kav~~GtTivgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~~~~ 101 (261)
T 3nzj_H 22 QPKATSTGTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSR 101 (261)
T ss_dssp --------CCEEEEEETTEEEEEEECCEEETTEEEETTCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred CCcccccCceEEEEEECCEEEEEEcCCcccCCeeccCCcceEEEEcCCEEEEeccCHHHHHHHHHHHHHHHHHhHHhhCC
Confidence 358999999999999999999999999998 5567888999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCCcCCCCCcceeeEEEEEcCCCCeEEEECCCCceeecceEEeCCCchhHHHHHHhhcCC
Q 026496 106 PMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNK 185 (237)
Q Consensus 106 ~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~~~~iv~G~d~~g~~ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~ 185 (237)
+++++.+++.+++.++.| .+||++++||||+|++||+||.+||+|++.+++++|+|+|++.++++||+.|++
T Consensus 102 ~~~v~~~a~~l~~~l~~~--------~~~~gv~llvaG~D~~Gp~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~ 173 (261)
T 3nzj_H 102 EPRVVSALQMLKQHLFKY--------QGHIGAYLIVAGVDPTGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQ 173 (261)
T ss_dssp CCCHHHHHHHHHHHHHHT--------TTCSCEEEEEEEEETTEEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHCCS
T ss_pred CCCHHHHHHHHHHHHHHh--------cCcccEEEEEEEEeCCCCEEEEECCCccEEecCeEEeccchHHHHHHHHHHhcc
Confidence 999999999999988543 268999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcccC-CCCcEEEEEEeCC--eEEcC
Q 026496 186 DLTLQEAETIALSILKQVMEEKV-TPNNVDIARVAPT--YHLYT 226 (237)
Q Consensus 186 ~~s~~ea~~l~~~~l~~~~~~~~-~~~~iei~ii~~~--~~~~~ 226 (237)
+|+++||++++++||..+.++|. ++++++|++|+++ ++.+.
T Consensus 174 ~ms~eEA~~la~~al~~a~~rD~~sg~~iev~vI~kdg~~~~~~ 217 (261)
T 3nzj_H 174 DLTKEEAIKLASDAIQAGIWNDLGSGSNVDVCVMEIGKDAEYLR 217 (261)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHCTTCCSCEEEEEEETTSCEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCCcEEEEEEECCCcEEEec
Confidence 99999999999999999999987 6889999999998 55443
No 34
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M*
Probab=100.00 E-value=1.2e-45 Score=311.36 Aligned_cols=205 Identities=18% Similarity=0.287 Sum_probs=190.5
Q ss_pred hhhHHHHHhcCCcEEEEEeCCEEEEEEeccCCC-CCccCCcccceEEEcCcEEEEEecchhhHHHHHHHHHHHHHHHHH-
Q 026496 24 VEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITS-PLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRF- 101 (237)
Q Consensus 24 veya~~~~~~G~t~vgi~~~dgVvla~d~~~~~-~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~- 101 (237)
.+.+++++++|+|+|||+++||||||+|+|.++ .++.+++.+||++|+++++|+++|..+|++.|.++++.+++.|++
T Consensus 31 ~~~~~~av~~GtT~vgi~~~dgVVlAaD~r~t~g~~i~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~ 110 (266)
T 1g0u_M 31 MVNTQQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYD 110 (266)
T ss_dssp ---CCCCCEEECCEEEEEETTEEEEEEECCEEETTEEEECCCCCEEECTTSEEEEEEEEHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhccCcccCceEEEEEECCEEEEEEcCCcccCceeecCCcCcEEEcCCCEEEEeccCHHHHHHHHHHHHHHHHHhhhc
Confidence 567788999999999999999999999999987 567788899999999999999999999999999999999999998
Q ss_pred ----HhCCCCCHHHHHHHHHHHHHHhcCCCCcCCCCCcceeeEEEEEcCC-CCeEEEECCCCceeecceEEeCCCchhHH
Q 026496 102 ----SYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDEN-GPSLYYTDPSGTFWQCNAKAIGSGSEGAD 176 (237)
Q Consensus 102 ----~~~~~i~~~~la~~ls~~~~~~~~~~~~~~~rP~~~~~iv~G~d~~-g~~ly~vd~~G~~~~~~~~a~G~g~~~~~ 176 (237)
.++++++++.+++.+++.+ |+++. +.|||++++||||+|++ ||+||.+||+|++.+++++++|+|++.++
T Consensus 111 ~~~~~~~~~~~v~~la~~l~~~l--y~~r~---~~~P~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~ 185 (266)
T 1g0u_M 111 NPLADAEEALEPSYIFEYLATVM--YQRRS---KMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMAN 185 (266)
T ss_dssp CTTTTTTTSCCHHHHHHHHHHHH--HHHHH---TTCCCCEEEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHHTHH
T ss_pred cchhhcCCCCCHHHHHHHHHHHH--HHhcc---CCCCceEEEEEEEEcCCCCEEEEEECCCCCEEeCCEEEEccCHHHHH
Confidence 8999999999999999999 66665 67999999999999986 89999999999999999999999999999
Q ss_pred HHHHhhcCC-----CCCHHHHHHHHHHHHHHHhcccC-CCCcEEEEEEeCC--eEEcCHHHHHHH
Q 026496 177 SSLQEQYNK-----DLTLQEAETIALSILKQVMEEKV-TPNNVDIARVAPT--YHLYTPSEVEAV 233 (237)
Q Consensus 177 ~~Le~~~~~-----~~s~~ea~~l~~~~l~~~~~~~~-~~~~iei~ii~~~--~~~~~~~ei~~~ 233 (237)
++||+.|++ +||++||++++++||..+.+++. ++++++|++|+++ ++.++++||+++
T Consensus 186 ~~Le~~~~~~~~~~~ms~eeA~~la~~al~~a~~rd~~sg~~i~v~vI~k~~g~~~~~~~ei~~~ 250 (266)
T 1g0u_M 186 PLLRKVVDRESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTGLTFKKNLQVENM 250 (266)
T ss_dssp HHHTTTCSSGGGGGGCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTTEEEEEEEEECCCC
T ss_pred HHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEECCCCeEEcCHHHhhhh
Confidence 999999999 99999999999999999999987 6889999999998 999998887654
No 35
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...
Probab=100.00 E-value=8.4e-44 Score=287.94 Aligned_cols=188 Identities=20% Similarity=0.224 Sum_probs=176.5
Q ss_pred CcEEEEEeCCEEEEEEeccCCCCC-ccCCcccceEEEcCcEEEEEecchhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 026496 35 STAIGLKTKEGVVLAVEKRITSPL-LEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTT 113 (237)
Q Consensus 35 ~t~vgi~~~dgVvla~d~~~~~~~-~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 113 (237)
+|+|||+++||||||+|+|.++++ ..+++.+||++|+++++++++|..+|++.|.++++.+++.|+++++++++++.++
T Consensus 2 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 81 (198)
T 1ryp_K 2 DIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQANIQLYSIREDYELSPQAVS 81 (198)
T ss_dssp CCEEEEECSSCEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred ceEEEEEECCEEEEEECCCcccCCEEEecCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 789999999999999999998865 4467899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCcCCCCCcceeeEEEEEcC--CCCeEEEECCCCceeecceEEeCCCchhHHHHHHhhcCCCCCHHH
Q 026496 114 QALCDLALRFGEGDEESMSRPFGVSLLIAGSDE--NGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQE 191 (237)
Q Consensus 114 ~~ls~~~~~~~~~~~~~~~rP~~~~~iv~G~d~--~g~~ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~e 191 (237)
+.+++.++.+++. .+||++++|+||||+ +||+||.+||+|++.+++++++|+|++.++++||+.|+++||++|
T Consensus 82 ~~l~~~l~~~~~~-----r~p~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~ee 156 (198)
T 1ryp_K 82 SFVRQELAKSIRS-----RRPYQVNVLIGGYDKKKNKPELYQIDYLGTKVELPYGAHGYSGFYTFSLLDHHYRPDMTTEE 156 (198)
T ss_dssp HHHHHHHHHHTTS-----SSCCCEEEEEEEEETTTTEEEEEEECTTCCEEECSEEECTTHHHHHHHHHHHHCCTTCCHHH
T ss_pred HHHHHHHHHhccc-----CCCceEEEEEEEEeCCCCCcEEEEECCCCCEEECCEEEEcccHHHHHHHHHhhcCCCCCHHH
Confidence 9999999888742 259999999999996 689999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccC-CCCcEEEEEEeCC-eEEcCH
Q 026496 192 AETIALSILKQVMEEKV-TPNNVDIARVAPT-YHLYTP 227 (237)
Q Consensus 192 a~~l~~~~l~~~~~~~~-~~~~iei~ii~~~-~~~~~~ 227 (237)
|++++++||..+.+++. ++++++|++|+++ ++.+++
T Consensus 157 a~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~~ 194 (198)
T 1ryp_K 157 GLDLLKLCVQELEKRMPMDFKGVIVKIVDKDGIRQVDD 194 (198)
T ss_dssp HHHHHHHHHHHHHHHCSBCCCCEEEEEEETTEEEEECC
T ss_pred HHHHHHHHHHHHHHhCccCCCceEEEEEcCCCEEEecc
Confidence 99999999999999986 7889999999999 888765
No 36
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H
Probab=100.00 E-value=2.8e-44 Score=297.32 Aligned_cols=189 Identities=27% Similarity=0.423 Sum_probs=178.4
Q ss_pred CcEEEEEeCCEEEEEEeccCCCCC-ccCCcccceEEEcCcEEEEEecchhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 026496 35 STAIGLKTKEGVVLAVEKRITSPL-LEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTT 113 (237)
Q Consensus 35 ~t~vgi~~~dgVvla~d~~~~~~~-~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 113 (237)
||+|||+++||||||+|+|.++++ ..+++.+||++|+++++|+++|..+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 TT~vgi~~kdgVVlaaD~r~t~g~~v~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (234)
T 3unf_H 1 TTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVT 80 (234)
T ss_dssp CEEEEEECSSEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEECCCcccCCEeccCccccEEEecCCEEEEecccHHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHH
Confidence 689999999999999999999865 4567889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCcCCCCCcceeeEEEEEcCCCCeEEEECCCCceeecceEEeCCCchhHHHHHHhhcCCCCCHHHHH
Q 026496 114 QALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAE 193 (237)
Q Consensus 114 ~~ls~~~~~~~~~~~~~~~rP~~~~~iv~G~d~~g~~ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~ 193 (237)
+.+++.+++| .+||++++||||+|++||+||.+||+|++.+++++|+|+|++.++++||+.|+++|+++||+
T Consensus 81 ~~l~~~l~~~--------~~p~~v~llvaG~D~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~ 152 (234)
T 3unf_H 81 RILRQTLFRY--------QGHVGASLVVGGVDLNGPQLYEVHPHGSYSRLPFTALGSGQGAAVALLEDRFQPNMTLEAAQ 152 (234)
T ss_dssp HHHHHHHHHT--------TTCSCEEEEEEEEETTEEEEEEECTTSCEEECSEEEEETTHHHHHHHHHHHCCSSCCHHHHH
T ss_pred HHHHHHHHhc--------CCCccEEEEEEEEeCCCCEEEEECCCCCEEeccEEEEcCCchhhHHHHHhccCCCCCHHHHH
Confidence 9999999654 26999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccC-CCCcEEEEEEeCC-eEEcCHHHHH
Q 026496 194 TIALSILKQVMEEKV-TPNNVDIARVAPT-YHLYTPSEVE 231 (237)
Q Consensus 194 ~l~~~~l~~~~~~~~-~~~~iei~ii~~~-~~~~~~~ei~ 231 (237)
+++++||..+.++|. ++++++|++|+++ ++.+++++++
T Consensus 153 ~la~~al~~~~~~D~~sg~~iev~vi~~dg~~~l~~~~i~ 192 (234)
T 3unf_H 153 ELLVEAITAGILSDLGSGGNVDACVITAGGAKLQRALSTP 192 (234)
T ss_dssp HHHHHHHHHHHHHBTTCCSCEEEEEEESSCEEEEEEEECC
T ss_pred HHHHHHHHHHHhhcCCCCCcEEEEEEECCCEEEeCceecc
Confidence 999999999999987 7889999999999 9988887764
No 37
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L
Probab=100.00 E-value=1.3e-43 Score=290.00 Aligned_cols=184 Identities=22% Similarity=0.299 Sum_probs=173.8
Q ss_pred HhcCCcEEEEEeCCEEEEEEeccCCCCC-ccCCcccceEEEcCcEEEEEecchhhHHHHHHHHHHHHHHHHHHhCCCCCH
Q 026496 31 IKLGSTAIGLKTKEGVVLAVEKRITSPL-LEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTV 109 (237)
Q Consensus 31 ~~~G~t~vgi~~~dgVvla~d~~~~~~~-~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~ 109 (237)
+++|+|+|||+++||||||+|+|.++++ +.+++.+||++|+++++++++|..+|++.|.++++.+++.|++.+++++++
T Consensus 6 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 85 (213)
T 1iru_M 6 VFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTT 85 (213)
T ss_dssp CCCCCEEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred cCCCCcEEEEEeCCEEEEEECCCcccCCEEecCCCCcEEEcCCCEEEEccccHHHHHHHHHHHHHHHHHHHHhcCCCCCH
Confidence 4789999999999999999999999866 446788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCcCCCCCcceeeEEEEEcCCC-CeEEEECCCCceeecceEEeCCCchhHHHHHHhh------
Q 026496 110 ESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENG-PSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQ------ 182 (237)
Q Consensus 110 ~~la~~ls~~~~~~~~~~~~~~~rP~~~~~iv~G~d~~g-~~ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~------ 182 (237)
+.+++.|++.+ |+++. |||++++||||+|++| |+||.+||+|++.+++++|+|+|++.++++||+.
T Consensus 86 ~~la~~l~~~~--y~~r~-----~P~~v~~lvaG~D~~g~p~Ly~id~~G~~~~~~~~aiGsg~~~a~~~Le~~~~~~~~ 158 (213)
T 1iru_M 86 GAIAAMLSTIL--YSRRF-----FPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNM 158 (213)
T ss_dssp HHHHHHHHHHH--HHTTT-----SCCCEEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTTCCSC
T ss_pred HHHHHHHHHHH--HhhCC-----CCceEEEEEEEEcCCCCEEEEEECCCCCEEECCEEEEeeCHHHHHHHHhhccccccc
Confidence 99999999999 66654 9999999999999765 9999999999999999999999999999999999
Q ss_pred ---cCCCCCHHHHHHHHHHHHHHHhcccC-CCCcEEEEEEeCC
Q 026496 183 ---YNKDLTLQEAETIALSILKQVMEEKV-TPNNVDIARVAPT 221 (237)
Q Consensus 183 ---~~~~~s~~ea~~l~~~~l~~~~~~~~-~~~~iei~ii~~~ 221 (237)
|+++||++||++++++||..+.+++. ++++++|++|+++
T Consensus 159 ~~~~~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~ 201 (213)
T 1iru_M 159 QNVEHVPLSLDRAMRLVKDVFISAAERDVYTGDALRICIVTKE 201 (213)
T ss_dssp SSCCCCCCCHHHHHHHHHHHHHHHHHHBTTSCSEEEEEEEETT
T ss_pred cccCCCCCCHHHHHHHHHHHHHHHHHhCCccCCcEEEEEEcCC
Confidence 88899999999999999999999987 6889999999998
No 38
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...
Probab=100.00 E-value=6.5e-44 Score=290.12 Aligned_cols=185 Identities=17% Similarity=0.314 Sum_probs=176.2
Q ss_pred HHHHhcCCcEEEEEeCCEEEEEEeccCCCC-CccCCcccceEEEcCcEEEEEecchhhHHHHHHHHHHHHHHHHHHhCCC
Q 026496 28 IEAIKLGSTAIGLKTKEGVVLAVEKRITSP-LLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEP 106 (237)
Q Consensus 28 ~~~~~~G~t~vgi~~~dgVvla~d~~~~~~-~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~ 106 (237)
++|+++|+|+|||+++||||||+|+|.+++ ++.+++.+||++|+++++++++|..+|++.|.++++.+++.|++.+++
T Consensus 3 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~- 81 (205)
T 1ryp_H 3 KGEVSLGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYHLELYTSQYGT- 81 (205)
T ss_dssp TTCCBCCCCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSS-
T ss_pred CCCCcCCceEEEEEeCCEEEEEEcCCcccCcEEEcCCcCceEEcCCCEEEEccCCHHHHHHHHHHHHHHHHHHHHHhCC-
Confidence 578999999999999999999999999985 677788899999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhcCCCCcCCCCCcceeeEEEEEcC-CCCeEEEECCCCceeecceEEeCCCchhHHHHHHhhcCC
Q 026496 107 MTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDE-NGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNK 185 (237)
Q Consensus 107 i~~~~la~~ls~~~~~~~~~~~~~~~rP~~~~~iv~G~d~-~g~~ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~ 185 (237)
++++.+++.+++.++.|++ + |++++|+||||+ +||+||.+||+|++.+++++++|+|++.++++||+.|++
T Consensus 82 ~~v~~la~~l~~~~~~~~~-------~-~~~~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~ 153 (205)
T 1ryp_H 82 PSTETAASVFKELCYENKD-------N-LTAGIIVAGYDDKNKGEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRE 153 (205)
T ss_dssp CCHHHHHHHHHHHHHHTTT-------T-CCEEEEEEEEETTTEEEEEEECTTSCCEEESEEEESGGGGGGHHHHHHHCCT
T ss_pred CCHHHHHHHHHHHHHhhhc-------C-ceEEEEEEEEecCCCcEEEEECCCccEEecCEEEEEecHHHHHHHHHhccCC
Confidence 9999999999999988753 2 899999999997 689999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcccC-CCCcEEEEEEeCC
Q 026496 186 DLTLQEAETIALSILKQVMEEKV-TPNNVDIARVAPT 221 (237)
Q Consensus 186 ~~s~~ea~~l~~~~l~~~~~~~~-~~~~iei~ii~~~ 221 (237)
+||++||++++++||..+.++|. ++++++|++|+++
T Consensus 154 ~~s~eea~~l~~~al~~a~~~d~~sg~~i~v~vi~~~ 190 (205)
T 1ryp_H 154 NMSKEETVDFIKHSLSQAIKWDGSSGGVIRMVVLTAA 190 (205)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETT
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCccCCeEEEEEEcCC
Confidence 99999999999999999999987 6889999999999
No 39
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...
Probab=100.00 E-value=4.6e-43 Score=288.38 Aligned_cols=184 Identities=22% Similarity=0.328 Sum_probs=174.1
Q ss_pred HhcCCcEEEEEeCCEEEEEEeccCCCCC-ccCCcccceEEEcCcEEEEEecchhhHHHHHHHHHHHHHHHHHHhC-CCCC
Q 026496 31 IKLGSTAIGLKTKEGVVLAVEKRITSPL-LEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYG-EPMT 108 (237)
Q Consensus 31 ~~~G~t~vgi~~~dgVvla~d~~~~~~~-~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~-~~i~ 108 (237)
+++|+|+|||+++||||||+|+|.++++ +.+++.+||++|+++++++++|..+|++.|.++++.+++.|++.++ ++++
T Consensus 6 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~ 85 (222)
T 1ryp_M 6 GDNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKRFKNSVKWYHFDHNDKKLS 85 (222)
T ss_dssp CCCCCEEEEEECSSCEEEEEECCEEETTEEEESCCCCCEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred ccCCccEEEEEeCCEEEEEEecccccCCEecCCCcCcEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 5789999999999999999999999866 4678899999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHHHhcCCCCcCCCCCcceeeEEEEEcCCC-CeEEEECCCCceeecceEEeCCCchhHHHHHHhh-----
Q 026496 109 VESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENG-PSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQ----- 182 (237)
Q Consensus 109 ~~~la~~ls~~~~~~~~~~~~~~~rP~~~~~iv~G~d~~g-~~ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~----- 182 (237)
++.+|+.+++.+ |+++. +||++++||||||++| |+||.+||.|++.+++++|+|+|+..++++||+.
T Consensus 86 v~~la~~l~~~l--y~~r~-----~P~~v~~ivaG~D~~g~p~Ly~~dp~G~~~~~~~~a~Gsg~~~a~~~Le~~~~~~~ 158 (222)
T 1ryp_M 86 INSAARNIQHLL--YGKRF-----FPYYVHTIIAGLDEDGKGAVYSFDPVGSYEREQCRAGGAAASLIMPFLDNQVNFKN 158 (222)
T ss_dssp HHHHHHHHHHHH--HTTTT-----SCCCEEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTSCTT
T ss_pred HHHHHHHHHHHH--HhcCC-----CCceEEEEEEEEcCCCCeEEEEECCCcCEEecCEEEEcCcHHHHHHHHhccccccc
Confidence 999999999998 66654 8999999999999765 9999999999999999999999999999999998
Q ss_pred ------------cCCCCCHHHHHHHHHHHHHHHhcccC-CCCcEEEEEEeCC
Q 026496 183 ------------YNKDLTLQEAETIALSILKQVMEEKV-TPNNVDIARVAPT 221 (237)
Q Consensus 183 ------------~~~~~s~~ea~~l~~~~l~~~~~~~~-~~~~iei~ii~~~ 221 (237)
|+++||++||++++++||..+.++|+ ++++++|++|+++
T Consensus 159 ~~~~~~~~~~~~~~~~~s~eeA~~la~~al~~a~~rd~~sg~~i~v~vi~~~ 210 (222)
T 1ryp_M 159 QYEPGTNGKVKKPLKYLSVEEVIKLVRDSFTSATERHIQVGDGLEILIVTKD 210 (222)
T ss_dssp CBCTTSTTCSBCCCCCCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETT
T ss_pred ccccccccccccCCCCCCHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEcCC
Confidence 88999999999999999999999997 6889999999998
No 40
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I
Probab=100.00 E-value=8.9e-43 Score=283.39 Aligned_cols=184 Identities=14% Similarity=0.186 Sum_probs=172.7
Q ss_pred HhcCCcEEEEEeCCEEEEEEeccCCCCCcc-CCcccceEEEcCcEEEEEecchhhHHHHHHHHHHHHHHHHHHhCCCCCH
Q 026496 31 IKLGSTAIGLKTKEGVVLAVEKRITSPLLE-PSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTV 109 (237)
Q Consensus 31 ~~~G~t~vgi~~~dgVvla~d~~~~~~~~~-~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~ 109 (237)
+.+|+|+|||+++||||||+|+|.++++.. +++.+||++|+++++++++|..+|++.|.++++.+++.|++++++++++
T Consensus 5 ~~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 84 (205)
T 1iru_J 5 SYNGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKP 84 (205)
T ss_dssp TSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEECSTTEEEECCSCHHHHHHHHHHHHHHHHHHHHHSSSCCCH
T ss_pred cCCCCeEEEEEeCCEEEEEECCccccCCeEeecCCccEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHhhcCCCCCH
Confidence 368999999999999999999999986644 5588999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCcCCCCCcceeeEEEEEcC--CCCeEEEECCCCceeec-ceEEeCCCchhHHHHHHhhcCCC
Q 026496 110 ESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDE--NGPSLYYTDPSGTFWQC-NAKAIGSGSEGADSSLQEQYNKD 186 (237)
Q Consensus 110 ~~la~~ls~~~~~~~~~~~~~~~rP~~~~~iv~G~d~--~g~~ly~vd~~G~~~~~-~~~a~G~g~~~~~~~Le~~~~~~ 186 (237)
+.+++.+++.+ |+++. .||++++||||||+ +||+||.+||+|++.++ .++++|+|++.++++||+.|+++
T Consensus 85 ~~la~~l~~~~--y~~r~-----~P~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~ 157 (205)
T 1iru_J 85 YTLMSMVANLL--YEKRF-----GPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPN 157 (205)
T ss_dssp HHHHHHHHHHH--HTTTT-----SCCSCCCEEEEECTTSCCEEEEEECTTCCEEECSSEEEEETTHHHHHHHHHHHCCSS
T ss_pred HHHHHHHHHHH--HHhcC-----CCceEEEEEEEEeCCCCCeEEEEECCCCCccccCCeeEeeeCHHHHHHHHhcccCCC
Confidence 99999999999 88775 49999999999995 68999999999998665 56999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcccC-CCCcEEEEEEeCC
Q 026496 187 LTLQEAETIALSILKQVMEEKV-TPNNVDIARVAPT 221 (237)
Q Consensus 187 ~s~~ea~~l~~~~l~~~~~~~~-~~~~iei~ii~~~ 221 (237)
||++||++++++||..+.+++. ++++++|++|+++
T Consensus 158 ~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~ 193 (205)
T 1iru_J 158 MDPDHLFETISQAMLNAVDRDAVSGMGVIVHIIEKD 193 (205)
T ss_dssp CCHHHHHHHHHHHHHHHGGGBTTSCSCEEEEEEESS
T ss_pred CCHHHHHHHHHHHHHHHHHhCcccCCceEEEEEcCC
Confidence 9999999999999999999997 5889999999998
No 41
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...
Probab=100.00 E-value=2e-42 Score=281.11 Aligned_cols=183 Identities=19% Similarity=0.206 Sum_probs=172.2
Q ss_pred HhcCCcEEEEEeCCEEEEEEeccCCCCCcc-CCcccceEEEcCcEEEEEecchhhHHHHHHHHHHHHHHHHHHhCCCCCH
Q 026496 31 IKLGSTAIGLKTKEGVVLAVEKRITSPLLE-PSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTV 109 (237)
Q Consensus 31 ~~~G~t~vgi~~~dgVvla~d~~~~~~~~~-~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~ 109 (237)
+.+|+|+|||+++||||||+|+|.++++.. +++.+||++|+ +++++++|..+|++.|.++++.+++.|++++++++++
T Consensus 5 ~~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~-~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 83 (204)
T 1ryp_J 5 SINGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYG-HVFLGITGLATDVTTLNEMFRYKTNLYKLKEERAIEP 83 (204)
T ss_dssp GSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEEET-TEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred CCCCCeEEEEEeCCEEEEEEcCCcccCCEEeeCCcceEEEeC-CEEEEeeEcHHHHHHHHHHHHHHHHHHhhccCCCCCH
Confidence 478999999999999999999999986644 55889999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCcCCCCCcceeeEEEEEcC--CCCeEEEECCCCceeec-ceEEeCCCchhHHHHHHhhcCCC
Q 026496 110 ESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDE--NGPSLYYTDPSGTFWQC-NAKAIGSGSEGADSSLQEQYNKD 186 (237)
Q Consensus 110 ~~la~~ls~~~~~~~~~~~~~~~rP~~~~~iv~G~d~--~g~~ly~vd~~G~~~~~-~~~a~G~g~~~~~~~Le~~~~~~ 186 (237)
+.+++.+++.+ |+++. .||++++||||||+ +||+||.+||+|++.++ .++++|+|++.++++||+.|+++
T Consensus 84 ~~la~~l~~~~--y~~~~-----~P~~v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~ 156 (204)
T 1ryp_J 84 ETFTQLVSSSL--YERRF-----GPYFVGPVVAGINSKSGKPFIAGFDLIGCIDEAKDFIVSGTASDQLFGMCESLYEPN 156 (204)
T ss_dssp HHHHHHHHHHH--HTTTT-----SCCCEEEEEEEECTTTCCEEEEEECTTCCEECCSSEEEEETTHHHHHHHHHHHCCSS
T ss_pred HHHHHHHHHHH--HHhcC-----CCceEEEEEEEEeCCCCceEEEEECCCCCccccCceeEeccCHHHHHHHHhhhcCCC
Confidence 99999999999 88876 39999999999996 68999999999999666 56999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcccC-CCCcEEEEEEeCC
Q 026496 187 LTLQEAETIALSILKQVMEEKV-TPNNVDIARVAPT 221 (237)
Q Consensus 187 ~s~~ea~~l~~~~l~~~~~~~~-~~~~iei~ii~~~ 221 (237)
|+++||++++++||..+.+++. ++++++|++|+++
T Consensus 157 ~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~ 192 (204)
T 1ryp_J 157 LEPEDLFETISQALLNAADRDALSGWGAVVYIIKKD 192 (204)
T ss_dssp CCHHHHHHHHHHHHHHHHTTBTTSCSCEEEEEEESS
T ss_pred cCHHHHHHHHHHHHHHHHHhCcccCCcEEEEEEcCC
Confidence 9999999999999999999987 6889999999998
No 42
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J
Probab=100.00 E-value=2.3e-42 Score=280.08 Aligned_cols=187 Identities=19% Similarity=0.229 Sum_probs=173.3
Q ss_pred CcEEEEEeCCEEEEEEeccCCC-CCccCCcccceEEEcCcEEEEEecchhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 026496 35 STAIGLKTKEGVVLAVEKRITS-PLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTT 113 (237)
Q Consensus 35 ~t~vgi~~~dgVvla~d~~~~~-~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 113 (237)
+|+|||+++||||||+|+|.++ +++.+++.+||++|+++++++++|..+|++.|.++++.+++.|++.++++++++.++
T Consensus 2 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 81 (201)
T 1iru_K 2 EYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAAA 81 (201)
T ss_dssp CCEEEEECSSEEEEEEECCEEETTEEEESSCCCEEECSSSEEEEEEESTTHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred ceEEEEEeCCEEEEEEcCccccCcEEEccCcceEEEecCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 7899999999999999999998 677788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCcCCCCCcceeeEEEEEcC-CCCeEEEECCCCceeecceEEeCCCchhHHHHHHhhcCCCCCHHHH
Q 026496 114 QALCDLALRFGEGDEESMSRPFGVSLLIAGSDE-NGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEA 192 (237)
Q Consensus 114 ~~ls~~~~~~~~~~~~~~~rP~~~~~iv~G~d~-~g~~ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea 192 (237)
+++++.+. |..+ ..|||++++|+||||+ +||+||.+||+|++.+++++++|+|++.++++||+.|+++||++||
T Consensus 82 ~~~~~~l~-~~~~----~~~p~~~~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea 156 (201)
T 1iru_K 82 NFTRRNLA-DCLR----SRTPYHVNLLLAGYDEHEGPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYYTPTISRERA 156 (201)
T ss_dssp HHHHHHHH-HHHT----SSSCCCEEEEEEEEETTTEEEEEEECTTCCEEECSEEEESHHHHHHHHHHHHHCCTTCCHHHH
T ss_pred HHHHHHHH-HHHh----cCCCccEEEEEEEEeCCCCeEEEEECCCcCeEECCEEEECCcHHHHHHHHHhcccCCCCHHHH
Confidence 99887652 2222 2379999999999997 6899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccC-CCCcEEEEEEeCC-eEEcC
Q 026496 193 ETIALSILKQVMEEKV-TPNNVDIARVAPT-YHLYT 226 (237)
Q Consensus 193 ~~l~~~~l~~~~~~~~-~~~~iei~ii~~~-~~~~~ 226 (237)
++++++||..+.+++. +++++++++|+++ ++.++
T Consensus 157 ~~l~~~al~~a~~rd~~sg~~i~v~vi~~~g~~~~~ 192 (201)
T 1iru_K 157 VELLRKCLEELQKRFILNLPTFSVRIIDKNGIHDLD 192 (201)
T ss_dssp HHHHHHHHHHHHHTBCBCCCCEEEEEEETTEEECCC
T ss_pred HHHHHHHHHHHHhhccccCCceEEEEEcCCCeEEee
Confidence 9999999999999998 6789999999999 77665
No 43
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N
Probab=100.00 E-value=2.6e-43 Score=285.30 Aligned_cols=191 Identities=18% Similarity=0.309 Sum_probs=176.9
Q ss_pred CcEEEEEeCCEEEEEEeccCCCC-CccCCcccceEEEcCcEEEEEecchhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 026496 35 STAIGLKTKEGVVLAVEKRITSP-LLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTT 113 (237)
Q Consensus 35 ~t~vgi~~~dgVvla~d~~~~~~-~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 113 (237)
||+|||+++||||||+|+|.+++ ++.+++.+||++|+++++++++|..+|++.|.++++.+++.|+++++++++++.++
T Consensus 1 TT~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 80 (199)
T 3unf_N 1 TTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAA 80 (199)
T ss_dssp CEEEEEECSSCEEEEECCCEEETTEEEESSCCCEEEEETTEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred CeEEEEEeCCeEEEEECCcccCCceeEccccCceEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 68999999999999999999985 67788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCcCCCCCcceeeEEEEEcC-CCCeEEEECCCCceeecc-eEEeCCCchhHHHHHHhhcCCCCCHHH
Q 026496 114 QALCDLALRFGEGDEESMSRPFGVSLLIAGSDE-NGPSLYYTDPSGTFWQCN-AKAIGSGSEGADSSLQEQYNKDLTLQE 191 (237)
Q Consensus 114 ~~ls~~~~~~~~~~~~~~~rP~~~~~iv~G~d~-~g~~ly~vd~~G~~~~~~-~~a~G~g~~~~~~~Le~~~~~~~s~~e 191 (237)
+++++.++.+ .|||++++||||+|+ +||+||. |+|++.++. ++++|+|++.++++||+.|+++||++|
T Consensus 81 ~~l~~~l~~~--------~~p~~v~~lvaG~D~~~~p~ly~--p~G~~~~~~~~~~~Gsgs~~a~~~Le~~~~~~ms~ee 150 (199)
T 3unf_N 81 NVVKNISYKY--------REDLLAHLIVAGWDQREGGQVYG--TMGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEE 150 (199)
T ss_dssp HHHHHHHHHT--------TTTCCCCEEEEEEETTTEEEEEE--CGGGCCEECSEEEEEGGGGGGHHHHHHHCCSSCCHHH
T ss_pred HHHHHHHHhc--------CCCceEEEEEEEEeCCCCcEEEE--ECCCceecCCEEEEccCHHHHHHHHHhhcCCCCCHHH
Confidence 9999999643 269999999999998 5799999 999976655 556799999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccC-CCCcEEEEEEeCC---eEEcCHHHHHHHHH
Q 026496 192 AETIALSILKQVMEEKV-TPNNVDIARVAPT---YHLYTPSEVEAVIN 235 (237)
Q Consensus 192 a~~l~~~~l~~~~~~~~-~~~~iei~ii~~~---~~~~~~~ei~~~~~ 235 (237)
|++++++||..+.++|. ++++++|++|+++ ++.++++||+++++
T Consensus 151 a~~la~~al~~~~~~d~~sg~~i~v~vi~~~g~~~~~l~~~ei~~~~~ 198 (199)
T 3unf_N 151 CRRFTTNAITLAMNRDGSSGGVIYLVTITAAGVDHRVILGDELPKFYD 198 (199)
T ss_dssp HHHHHHHHHHHHHHHCTTCCSCEEEEEECSSCEEEEEECGGGSCCCCC
T ss_pred HHHHHHHHHHHHHHhccccCCCeEEEEEcCCCEEEEEcCcccCccccc
Confidence 99999999999999987 6789999999998 88899999987653
No 44
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...
Probab=100.00 E-value=6.2e-42 Score=281.59 Aligned_cols=184 Identities=24% Similarity=0.335 Sum_probs=172.7
Q ss_pred CcEEEEEeCCEEEEEEeccCCCCC-ccCCcccceEEEcCcEEEEEecchhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 026496 35 STAIGLKTKEGVVLAVEKRITSPL-LEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTT 113 (237)
Q Consensus 35 ~t~vgi~~~dgVvla~d~~~~~~~-~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 113 (237)
+|+|||+++||||||+|+|.++++ ..+++.+||++|+++++++++|..+|++.|.++++.+++.|+++++++++++.++
T Consensus 1 TT~vgi~~~dgVvlaaD~r~t~g~~~~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 80 (222)
T 1ryp_I 1 TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSAL 80 (222)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEEcCCcccCCeeecCCcccEEEecCCEEEEecccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 689999999999999999999855 5567889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCcCCCCCcceeeEEEEEcCCCCeEEEECCCCceeecceEEeCCCchhHHHHHHhhcCCCCCHHHHH
Q 026496 114 QALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAE 193 (237)
Q Consensus 114 ~~ls~~~~~~~~~~~~~~~rP~~~~~iv~G~d~~g~~ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~ 193 (237)
+.+++.++.| .|||++++||||+|++||+||.+||+|++.+++++|+|+|++.++++||+.|+++||++||+
T Consensus 81 ~~l~~~l~~~--------~~p~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~ 152 (222)
T 1ryp_I 81 QMLKQHLFKY--------QGHIGAYLIVAGVDPTGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAI 152 (222)
T ss_dssp HHHHHHHHHT--------TTCSCEEEEEEEEETTEEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHCCSSCCHHHHH
T ss_pred HHHHHHHhhc--------CCCCCeeEEEEEEeCCCCEEEEECCCCCEEecCEEEECCCHHHHHHHHHhhCCCCcCHHHHH
Confidence 9999998654 27999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccC-CCCcEEEEEEeCC--eEEcC
Q 026496 194 TIALSILKQVMEEKV-TPNNVDIARVAPT--YHLYT 226 (237)
Q Consensus 194 ~l~~~~l~~~~~~~~-~~~~iei~ii~~~--~~~~~ 226 (237)
+++++||..+.++|. ++++++|++|+++ ++.+.
T Consensus 153 ~la~~al~~~~~~d~~sg~~i~v~vi~~~g~~~~~~ 188 (222)
T 1ryp_I 153 KLASDAIQAGIWNDLGSGSNVDVCVMEIGKDAEYLR 188 (222)
T ss_dssp HHHHHHHHHHHHHCTTCCSCEEEEEEETTSCEEEEE
T ss_pred HHHHHHHHHHHhccccCCCcEEEEEEECCCCEEEEe
Confidence 999999999999987 6789999999987 56554
No 45
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H
Probab=100.00 E-value=7e-42 Score=283.30 Aligned_cols=186 Identities=23% Similarity=0.385 Sum_probs=174.0
Q ss_pred CcEEEEEeCCEEEEEEeccCCCCC-ccCCcccceEEEcCcEEEEEecchhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 026496 35 STAIGLKTKEGVVLAVEKRITSPL-LEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTT 113 (237)
Q Consensus 35 ~t~vgi~~~dgVvla~d~~~~~~~-~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 113 (237)
+|+|||+++||||||+|+|.++++ ..+++.+||++|+++++|+++|..+|++.|.++++.+++.|+++++++++++.++
T Consensus 1 TTivgi~~~dgVVlaaD~r~t~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (234)
T 1iru_I 1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTAN 80 (234)
T ss_dssp CCEEEEEETTEEEEEECCCEESSSBEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCceeccCcccceEEecCCEEEEecCcHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 689999999999999999999965 4467889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCcCCCCCcceeeEEEEEcCCCCeEEEECCCCceeecceEEeCCCchhHHHHHHhhcCCCCCHHHHH
Q 026496 114 QALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAE 193 (237)
Q Consensus 114 ~~ls~~~~~~~~~~~~~~~rP~~~~~iv~G~d~~g~~ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~ 193 (237)
+.+++.++.|+ +||++++||||||++||+||.+||+|++.+++++++|+|++.++++||+.|+++||++||+
T Consensus 81 ~~l~~~l~~~~--------~~~~v~llvaG~D~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~ 152 (234)
T 1iru_I 81 RMLKQMLFRYR--------GYIGAALVLGGVDVTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAK 152 (234)
T ss_dssp HHHHHHHHHTT--------TCSCEEEEEEEECSSCEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHSCCTTCCHHHHH
T ss_pred HHHHHHHHhcC--------CCCceeEEEEEEcCCCCEEEEECCCCCEEecCEEEECCchHHHHHHHHHhccCCCCHHHHH
Confidence 99999886542 5899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccC-CCCcEEEEEEeCC-eEEcCHH
Q 026496 194 TIALSILKQVMEEKV-TPNNVDIARVAPT-YHLYTPS 228 (237)
Q Consensus 194 ~l~~~~l~~~~~~~~-~~~~iei~ii~~~-~~~~~~~ 228 (237)
+++++||..+.++|. ++++++|++|+++ ++.+.+.
T Consensus 153 ~la~~al~~a~~~d~~sg~~i~v~vi~k~g~~~~~~~ 189 (234)
T 1iru_I 153 NLVSEAIAAGIFNDLGSGSNIDLCVISKNKLDFLRPY 189 (234)
T ss_dssp THHHHHHHHHHHHCTTCCSCEEEEEEETTEEECCSEE
T ss_pred HHHHHHHHHHHHhcccCCCCEEEEEEECCcEEEEcce
Confidence 999999999999987 5789999999999 7766543
No 46
>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A
Probab=100.00 E-value=7.1e-36 Score=237.89 Aligned_cols=169 Identities=20% Similarity=0.249 Sum_probs=149.1
Q ss_pred hcCCcEEEEEeCCEEEEEEeccCCC-CC-ccCCcccceEEE-cCcEEEEEecchhhHHHHHHHHHHHHHHHHHHhCCCCC
Q 026496 32 KLGSTAIGLKTKEGVVLAVEKRITS-PL-LEPSSVEKIMEI-DEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMT 108 (237)
Q Consensus 32 ~~G~t~vgi~~~dgVvla~d~~~~~-~~-~~~~~~~ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~ 108 (237)
.+|+|+|||+++||||||+|+|.++ .+ +.+++.+||++| +++++++++|..+|++.|.++++.+++.|+ + +
T Consensus 3 ~~GtTivgi~~~dgVvlaaD~r~t~g~~~i~~~~~~KI~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~y~---g---~ 76 (180)
T 2z3b_A 3 FHATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEAKLEEYN---G---N 76 (180)
T ss_dssp BCCCCEEEEEETTEEEEEECCCEEETTTEEEESCCCCEEEETTTTEEEEECSCHHHHHHHHHHHHHHHHHTT---T---C
T ss_pred CCCeEEEEEEECCEEEEEECCCccCCCceEecCCCCcEEEECCCCEEEEeCchHHHHHHHHHHHHHHHHHhc---C---C
Confidence 5799999999999999999999998 67 778899999999 999999999999999999999999999987 3 2
Q ss_pred HHHHHHHHHHHHHHhcCCCCcCCCCCcceeeEEEEEcCCCCeEEEECCCCceee--cceEEeCCCchhHHHHHHhhcCC-
Q 026496 109 VESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQ--CNAKAIGSGSEGADSSLQEQYNK- 185 (237)
Q Consensus 109 ~~~la~~ls~~~~~~~~~~~~~~~rP~~~~~iv~G~d~~g~~ly~vd~~G~~~~--~~~~a~G~g~~~~~~~Le~~~~~- 185 (237)
+.+.++++.+.++++. +.|||++++||+ +||+||.+||+|++.+ ++++|+|+|+++++++||+.|++
T Consensus 77 ---~~~~~~~l~~~~~~~~---~~rp~~~~~lva----d~p~ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~ 146 (180)
T 2z3b_A 77 ---LKRAAVELAKEWRSDK---VLRKLEAMLIVM----NQDTLLLVSGTGEVIEPDDGILAIGSGGNYALAAGRALKKHA 146 (180)
T ss_dssp ---HHHHHHHHHHHHHHCT---TGGGCCCCEEEE----CSSCEEEECTTCCEECCSSSEEEESTTHHHHHHHHHHHHHHH
T ss_pred ---hHHHHHHHHHHHHhhh---CcCcceEEEEEE----cCCeEEEECCCCcEEEeCCCEEEECCCHHHHHHHHHHhhhcc
Confidence 2333334445555565 789999999999 4799999999999998 49999999999999999999998
Q ss_pred --CCCHHHHHHHHHHHHHHHhcccC-CCCcEEEEEEe
Q 026496 186 --DLTLQEAETIALSILKQVMEEKV-TPNNVDIARVA 219 (237)
Q Consensus 186 --~~s~~ea~~l~~~~l~~~~~~~~-~~~~iei~ii~ 219 (237)
+|+.+| ++.+||..+.++|. ++++++|.+|+
T Consensus 147 ~~~mt~ee---l~~~al~~a~~rd~~sg~~i~v~~i~ 180 (180)
T 2z3b_A 147 GESMSASE---IARAALETAGEICVYTNDQIILEELE 180 (180)
T ss_dssp GGGCCHHH---HHHHHHHHHHHHCTTCCSCCEEEEEC
T ss_pred CCCCCHHH---HHHHHHHHHHHhcCccCCeEEEEEEC
Confidence 999999 47799999999997 78899999873
No 47
>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4
Probab=100.00 E-value=3.9e-35 Score=231.81 Aligned_cols=165 Identities=20% Similarity=0.259 Sum_probs=144.3
Q ss_pred CcEEEEEeCCEEEEEEeccCCC-CCccCCcccceEEE-cCcEEEEEecchhhHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Q 026496 35 STAIGLKTKEGVVLAVEKRITS-PLLEPSSVEKIMEI-DEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVEST 112 (237)
Q Consensus 35 ~t~vgi~~~dgVvla~d~~~~~-~~~~~~~~~ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l 112 (237)
||+|||+++||||||+|+|.++ .++.+++.+||++| +++++++++|..+|++.|.++++.+++.|+.+ .++.+
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~-----~~~~~ 75 (171)
T 1m4y_A 1 TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRFEAKLREWGGN-----LTKAA 75 (171)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTTC-----HHHHH
T ss_pred CeEEEEEECCEEEEEECCCcccCCEEEeCCcceEEEeCCCCEEEEeCccHHHHHHHHHHHHHHHHHhccc-----HHHHH
Confidence 6899999999999999999998 67778889999999 99999999999999999999999999988743 24444
Q ss_pred HHHHHHHHHHhcCCCCcCCCCCcceeeEEEEEcCCCCeEEEECCCCceeecc--eEEeCCCchhHHHHHHhhcC-CCCCH
Q 026496 113 TQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCN--AKAIGSGSEGADSSLQEQYN-KDLTL 189 (237)
Q Consensus 113 a~~ls~~~~~~~~~~~~~~~rP~~~~~iv~G~d~~g~~ly~vd~~G~~~~~~--~~a~G~g~~~~~~~Le~~~~-~~~s~ 189 (237)
++. .+.++++. +.|||++++|++ | ||+||.+||+|++.+++ +.++|+|+++++++||+.|+ ++||.
T Consensus 76 ~~l----~~~~~~~~---~~~~~~~~~lv~--D--~p~Ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~ms~ 144 (171)
T 1m4y_A 76 VEL----AKDWRTDR---VLRRLEALLLVA--D--KENIFIISGNGEVIQPDDDAAAIGSGGPYALAAAKALLRNTDLSA 144 (171)
T ss_dssp HHH----HHHHHHCT---TGGGCCCEEEEE--C--SSCEEEECTTSCEECCSSSEEEESTTHHHHHHHHHHHHHHCCCCH
T ss_pred HHH----HHHHHHhC---CCCceEEEEEEE--c--CCEEEEECCCCCEEecCCCEEEECCcHHHHHHHHHHhcccCCCCH
Confidence 443 33444444 678999999988 5 89999999999999988 99999999999999999999 99997
Q ss_pred HHHHHHHHHHHHHHhcccC-CCCcEEEEEE
Q 026496 190 QEAETIALSILKQVMEEKV-TPNNVDIARV 218 (237)
Q Consensus 190 ~ea~~l~~~~l~~~~~~~~-~~~~iei~ii 218 (237)
++++++||+.+.++|. ++++++|.++
T Consensus 145 ---~~l~~~al~~a~~rd~~sg~~i~v~~~ 171 (171)
T 1m4y_A 145 ---REIVEKAMTIAGEICIYTNQNIVIEEV 171 (171)
T ss_dssp ---HHHHHHHHHHHHHHCTTCCSCCEEEEC
T ss_pred ---HHHHHHHHHHHHHhCcccCCeEEEEEC
Confidence 6789999999999987 6888998764
No 48
>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A
Probab=100.00 E-value=1.3e-34 Score=229.47 Aligned_cols=166 Identities=19% Similarity=0.198 Sum_probs=144.6
Q ss_pred CcEEEEEeCCEEEEEEeccCCC-CCccCCcccceEEE-cCcEEEEEecchhhHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Q 026496 35 STAIGLKTKEGVVLAVEKRITS-PLLEPSSVEKIMEI-DEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVEST 112 (237)
Q Consensus 35 ~t~vgi~~~dgVvla~d~~~~~-~~~~~~~~~ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l 112 (237)
+|+|||+++||||||+|+|.++ .++.+++.+||++| +++++++++|..+|++.|.++++.+++.|+. +....
T Consensus 1 tT~vgi~~~dgVvlaaD~r~t~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~------~~~~~ 74 (174)
T 1g3k_A 1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFERKLEMHQG------HLLKS 74 (174)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTT------CHHHH
T ss_pred CeEEEEEECCEEEEEECCCCccCCeeEeCCCCcEEEECCCCEEEEeCccHHHHHHHHHHHHHHHHHhcC------cHHHH
Confidence 6899999999999999999998 46778899999999 9999999999999999999999999999874 33444
Q ss_pred HHHHHHHHHHhcCCCCcCCCCCcceeeEEEEEcCCCCeEEEECCCCceeecc---eEEeCCCchhHHHHHHhhcC-CCCC
Q 026496 113 TQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCN---AKAIGSGSEGADSSLQEQYN-KDLT 188 (237)
Q Consensus 113 a~~ls~~~~~~~~~~~~~~~rP~~~~~iv~G~d~~g~~ly~vd~~G~~~~~~---~~a~G~g~~~~~~~Le~~~~-~~~s 188 (237)
+..|++ .++++. +.||+ +.+++|+| ||+||.+||+|++.+++ ++|+|+|+++++++||+.|+ ++|+
T Consensus 75 ~~~l~~---~~~~~~---~~r~~--~~~l~g~d--~p~Ly~~d~~G~~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~mt 144 (174)
T 1g3k_A 75 AVELAK---DWRTDR---ALRKL--EAMLIVAD--EKESLIITGIGDVVQPEEDQILAIGSGGNYALSAARALVENTELS 144 (174)
T ss_dssp HHHHHH---HHHHST---TGGGC--CCEEEEEC--SSCEEEEETTTEEECCCTTCEEEESTTHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHH---HHHhcc---CcCcc--eEEEEEEC--CCEEEEEcCCCcEEecCCCcEEEEcccHHHHHHHHHHhcccCCCC
Confidence 444444 444444 56775 57777887 79999999999999988 99999999999999999999 9999
Q ss_pred HHHHHHHHHHHHHHHhcccC-CCCcEEEEEEe
Q 026496 189 LQEAETIALSILKQVMEEKV-TPNNVDIARVA 219 (237)
Q Consensus 189 ~~ea~~l~~~~l~~~~~~~~-~~~~iei~ii~ 219 (237)
.+ +++++||..+.++|. ++++++|++|+
T Consensus 145 ~~---~l~~~al~~a~~rd~~sg~~i~v~~i~ 173 (174)
T 1g3k_A 145 AH---EIVEKSLRIAGDICVFTNTNFTIEELP 173 (174)
T ss_dssp HH---HHHHHHHHHHHHHCTTCCSCCEEEEEC
T ss_pred HH---HHHHHHHHHHHHhccccCCceEEEEec
Confidence 55 799999999999987 68899999986
No 49
>2hc5_A ORF 99, hypothetical protein YVYC; NESG, GFT-PSI, protein structure initiative, northeast structural genomics consortium, alpha-beta, FLAG; NMR {Bacillus subtilis} SCOP: d.352.1.1
Probab=46.81 E-value=24 Score=24.95 Aligned_cols=27 Identities=7% Similarity=0.009 Sum_probs=22.9
Q ss_pred CCcEEEEEEeCC----eEEcCHHHHHHHHHh
Q 026496 210 PNNVDIARVAPT----YHLYTPSEVEAVINR 236 (237)
Q Consensus 210 ~~~iei~ii~~~----~~~~~~~ei~~~~~~ 236 (237)
.+.+-|.+++++ ++.+|++++-++..+
T Consensus 66 ~~~~vVkVvD~~TgEVIRqIPpEe~L~l~~~ 96 (117)
T 2hc5_A 66 LNEYYVKVIEDSTNEVIREIPPKRWLDFYAA 96 (117)
T ss_dssp TTEEEEEEEETTTTEEEEEECHHHHHHHHHH
T ss_pred CCcEEEEEEECCCCcEEEeCChHHHHHHHHH
Confidence 456889999987 899999999888765
No 50
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=42.35 E-value=32 Score=23.04 Aligned_cols=48 Identities=4% Similarity=0.071 Sum_probs=37.3
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEEeCC---eEEcCHHHHHHHHH
Q 026496 183 YNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPT---YHLYTPSEVEAVIN 235 (237)
Q Consensus 183 ~~~~~s~~ea~~l~~~~l~~~~~~~~~~~~iei~ii~~~---~~~~~~~ei~~~~~ 235 (237)
..++++.++..+.+++.++.. ....+.+.+++.+ +...+++|++..+.
T Consensus 22 v~~~i~~~~L~~kv~~~~~~~-----~~~~f~lky~DEeGD~itisSd~EL~eAl~ 72 (89)
T 1vd2_A 22 FEPSISFEGLCNEVRDMCSFD-----NEQLFTMKWIDEEGDPCTVSSQLELEEAFR 72 (89)
T ss_dssp ECTTCCHHHHHHHHHHHTTCC-----SSCCEEEEECCSSSCCEECCSHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhCCC-----CCCeEEEEEECCCCCcccccCHHHHHHHHH
Confidence 356789999887777755421 3457999999987 99999999998875
No 51
>3jx9_A Putative phosphoheptose isomerase; YP_001815198.1, structura genomics, joint center for structural genomics, JCSG; HET: MSE; 1.95A {Exiguobacterium sibiricum 255-15}
Probab=37.30 E-value=20 Score=27.16 Aligned_cols=31 Identities=10% Similarity=-0.042 Sum_probs=28.2
Q ss_pred CceeCCCCccc-chhhHHHHHhcCCcEEEEEe
Q 026496 12 VNTFSPEGRLF-QVEYAIEAIKLGSTAIGLKT 42 (237)
Q Consensus 12 ~~~fsp~G~~~-qveya~~~~~~G~t~vgi~~ 42 (237)
+-+||+.|+-. -+|-|+++-++|.++|+|..
T Consensus 81 vii~S~Sg~n~~~ie~A~~ake~G~~vIaITs 112 (170)
T 3jx9_A 81 VLIFTPDTERSDLLASLARYDAWHTPYSIITL 112 (170)
T ss_dssp EEEEESCSCCHHHHHHHHHHHHHTCCEEEEES
T ss_pred EEEEeCCCCCHHHHHHHHHHHHCCCcEEEEeC
Confidence 45899999877 89999999999999999987
No 52
>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}
Probab=35.03 E-value=27 Score=29.10 Aligned_cols=71 Identities=13% Similarity=0.100 Sum_probs=46.8
Q ss_pred CeEEEECCCCceee-cceEEeCCCchhHHHHHHhhcCCCCCHHHHHHH----------------HHHHHHHHhcccCC--
Q 026496 149 PSLYYTDPSGTFWQ-CNAKAIGSGSEGADSSLQEQYNKDLTLQEAETI----------------ALSILKQVMEEKVT-- 209 (237)
Q Consensus 149 ~~ly~vd~~G~~~~-~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l----------------~~~~l~~~~~~~~~-- 209 (237)
|..|.||+.|.+.. ++.+..+.....+...|++...+++++.++++. +.+.|+.+..- .+
T Consensus 103 r~tfiId~~G~i~~~~~~v~~~~h~~~~l~~~~~~~~~~~~~~~~I~~RRSiR~F~~~~V~~e~l~~ileaA~~A-PS~~ 181 (322)
T 4eo3_A 103 RSTFLIDRWGFVRKEWRRVKVEGHVQEVKEALDRLIEEDLSLNKHIEWRRARRALKKDRVPREELELLIKAAHLA-PSCM 181 (322)
T ss_dssp CEEEEECTTSBEEEEEESCCSTTHHHHHHHHHHHHHHHHTSCCHHHHHCCCCCCBCCCCCCHHHHHHHHHHHHTS-CCGG
T ss_pred cEEEEECCCCEEEEEEeCCCccccHHHHHHHHhhhchhhhHHHHHHHhhhccCCcCccccCHHHHHHHHHHHHhC-cCcC
Confidence 67899999999764 444556666778888888876666776666654 44455444322 22
Q ss_pred -CCcEEEEEEeC
Q 026496 210 -PNNVDIARVAP 220 (237)
Q Consensus 210 -~~~iei~ii~~ 220 (237)
...+.+.+|+.
T Consensus 182 N~Qpwrfivv~d 193 (322)
T 4eo3_A 182 NNQPWRFVVVDE 193 (322)
T ss_dssp GCCCCEEEEECC
T ss_pred CCcCeEEEEEeC
Confidence 33477777765
No 53
>2yxo_A Histidinol phosphatase; metal-dependent, hydrolase; 1.60A {Thermus thermophilus} PDB: 2yz5_A 2z4g_A
Probab=30.66 E-value=31 Score=27.23 Aligned_cols=32 Identities=13% Similarity=0.092 Sum_probs=27.0
Q ss_pred ceeCCCCcccchhhHHHHHhcCCcEEEEEeCC
Q 026496 13 NTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKE 44 (237)
Q Consensus 13 ~~fsp~G~~~qveya~~~~~~G~t~vgi~~~d 44 (237)
|.||++|...--|++..|...|-..||+.-.+
T Consensus 8 t~~S~DG~~~~ee~v~~A~~~Gl~~iaiTDH~ 39 (267)
T 2yxo_A 8 TPLCGHAEGHPEAYLEEARAKGLKGVVFTDHS 39 (267)
T ss_dssp CGGGSSCCSCHHHHHHHHHHTTCSEEEEEEEC
T ss_pred cCCCCCCCCCHHHHHHHHHHcCCCEEEEcCCC
Confidence 47899998877799999999999999986543
No 54
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=25.63 E-value=83 Score=20.71 Aligned_cols=50 Identities=20% Similarity=0.241 Sum_probs=31.2
Q ss_pred EEEECCCCc-eeecceEEeCCCchhHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhc
Q 026496 151 LYYTDPSGT-FWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVME 205 (237)
Q Consensus 151 ly~vd~~G~-~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~ 205 (237)
-..|.|+|+ .|.+.+...|.......+ --+.+|+++|-+.+.++...+.+
T Consensus 27 ~L~V~psG~K~w~~ryr~~Gk~~~~~LG-----~yp~~sL~~AR~~a~~~r~~l~~ 77 (88)
T 3jtz_A 27 YLLVKPGGSRHWYLKYRISGKESRIALG-----AYPAISLSDARQQREGIRKMLAL 77 (88)
T ss_dssp EEEECTTSCEEEEEEEEETTEEEEEEEE-----ETTTSCHHHHHHHHHHHHHHHTC
T ss_pred EEEEecCCCEEEEEEEEeCCeEEEEEeE-----CCCCCCHHHHHHHHHHHHHHHHc
Confidence 346889987 445555543421111111 12689999999999998887654
No 55
>3fpw_A HBPS, extracellular HAEM-binding protein; heme binding protein; 1.60A {Streptomyces reticuli} PDB: 3fpv_A
Probab=20.51 E-value=2.2e+02 Score=21.76 Aligned_cols=35 Identities=23% Similarity=0.297 Sum_probs=29.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEEeCC
Q 026496 184 NKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPT 221 (237)
Q Consensus 184 ~~~~s~~ea~~l~~~~l~~~~~~~~~~~~iei~ii~~~ 221 (237)
.+.+++++|.+++..++..+.++. ..+-|.|++..
T Consensus 62 ~~~ltl~~A~~l~~aA~~~A~~~g---~pV~IaVvD~~ 96 (192)
T 3fpw_A 62 STHLTLEAATKAARAAVEAAEKDG---RHVSVAVVDRN 96 (192)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHTT---CCCEEEEEETT
T ss_pred cCCCCHHHHHHHHHHHHHHHHhcC---CCEEEEEEeCC
Confidence 468999999999999999998873 36888888865
Done!