Query 026497
Match_columns 237
No_of_seqs 191 out of 1308
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 08:47:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026497.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026497hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00411 nodulin MtN21 family 100.0 5.6E-31 1.2E-35 238.2 20.8 225 1-231 127-357 (358)
2 PRK11453 O-acetylserine/cystei 99.9 1.4E-25 3.1E-30 198.2 18.1 183 2-201 104-291 (299)
3 PRK11689 aromatic amino acid e 99.9 4.2E-24 9E-29 188.6 15.5 182 2-200 109-290 (295)
4 PRK11272 putative DMT superfam 99.9 4.8E-23 1E-27 181.5 17.9 172 6-200 117-288 (292)
5 PRK10532 threonine and homoser 99.9 2.7E-22 6E-27 176.9 18.1 170 7-201 116-285 (293)
6 TIGR00817 tpt Tpt phosphate/ph 99.9 1.3E-22 2.7E-27 179.4 13.6 179 2-201 109-297 (302)
7 TIGR00950 2A78 Carboxylate/Ami 99.9 9.7E-22 2.1E-26 169.2 17.0 168 2-192 91-259 (260)
8 PRK15430 putative chlorampheni 99.9 1E-20 2.2E-25 167.1 16.5 169 2-198 117-286 (296)
9 TIGR03340 phn_DUF6 phosphonate 99.8 1.6E-20 3.4E-25 164.6 11.8 171 2-194 107-280 (281)
10 PF06027 DUF914: Eukaryotic pr 99.8 2.5E-19 5.4E-24 160.3 14.9 190 2-204 123-312 (334)
11 PTZ00343 triose or hexose phos 99.8 1.1E-18 2.4E-23 157.8 15.2 176 2-198 158-349 (350)
12 COG0697 RhaT Permeases of the 99.8 5E-17 1.1E-21 140.5 18.2 170 4-198 117-288 (292)
13 PF00892 EamA: EamA-like trans 99.7 1.3E-15 2.8E-20 116.0 10.8 125 68-196 1-125 (126)
14 TIGR00688 rarD rarD protein. T 99.6 1.5E-14 3.3E-19 124.9 13.8 139 2-172 114-255 (256)
15 TIGR00776 RhaT RhaT L-rhamnose 99.6 1.7E-14 3.7E-19 127.3 12.4 173 3-198 105-289 (290)
16 COG5006 rhtA Threonine/homoser 99.5 2.1E-13 4.5E-18 115.8 15.3 164 13-198 120-283 (292)
17 COG2510 Predicted membrane pro 99.5 4.8E-13 1E-17 102.7 11.7 135 60-197 5-139 (140)
18 PF08449 UAA: UAA transporter 99.5 1.2E-12 2.7E-17 116.0 16.2 190 1-201 107-301 (303)
19 KOG2765 Predicted membrane pro 99.4 6.3E-13 1.4E-17 118.4 8.3 188 4-203 205-396 (416)
20 COG2962 RarD Predicted permeas 99.4 2.1E-11 4.6E-16 105.7 16.9 170 2-199 116-285 (293)
21 KOG2766 Predicted membrane pro 99.3 2.1E-13 4.5E-18 116.1 0.5 177 2-197 122-299 (336)
22 PRK15430 putative chlorampheni 99.3 8.6E-11 1.9E-15 103.8 16.5 137 56-196 6-144 (296)
23 PRK02971 4-amino-4-deoxy-L-ara 99.2 3.2E-10 7E-15 88.6 14.0 121 59-200 3-125 (129)
24 TIGR00688 rarD rarD protein. T 99.2 9.1E-10 2E-14 95.0 16.1 136 58-196 2-141 (256)
25 KOG1580 UDP-galactose transpor 99.2 5.7E-10 1.2E-14 94.3 14.1 179 4-196 131-312 (337)
26 TIGR03340 phn_DUF6 phosphonate 99.2 8.5E-10 1.9E-14 96.7 15.8 133 60-197 3-135 (281)
27 PF03151 TPT: Triose-phosphate 99.1 6E-09 1.3E-13 82.7 15.4 137 59-196 1-152 (153)
28 KOG4510 Permease of the drug/m 99.0 3.6E-11 7.8E-16 103.1 0.6 185 2-198 141-326 (346)
29 PLN00411 nodulin MtN21 family 99.0 1.6E-08 3.5E-13 91.9 16.1 138 59-198 14-157 (358)
30 PF13536 EmrE: Multidrug resis 99.0 1.3E-08 2.8E-13 77.5 11.6 107 93-200 3-109 (113)
31 PRK11272 putative DMT superfam 99.0 4.7E-08 1E-12 86.2 16.9 131 60-197 10-141 (292)
32 TIGR00950 2A78 Carboxylate/Ami 98.9 2.1E-08 4.6E-13 86.1 13.6 119 70-197 1-119 (260)
33 PRK11453 O-acetylserine/cystei 98.9 7.6E-08 1.6E-12 85.1 16.2 127 60-198 6-133 (299)
34 PRK15051 4-amino-4-deoxy-L-ara 98.9 4.9E-08 1.1E-12 74.4 11.8 66 131-196 43-108 (111)
35 TIGR00817 tpt Tpt phosphate/ph 98.8 1.6E-07 3.5E-12 82.9 16.3 119 73-195 17-135 (302)
36 PTZ00343 triose or hexose phos 98.8 2.3E-07 4.9E-12 84.1 16.6 124 71-196 62-185 (350)
37 KOG2234 Predicted UDP-galactos 98.8 3.9E-07 8.5E-12 81.3 17.4 186 3-202 137-327 (345)
38 PRK11689 aromatic amino acid e 98.8 3.3E-07 7.2E-12 80.9 15.8 131 58-198 4-138 (295)
39 PF04142 Nuc_sug_transp: Nucle 98.7 2.7E-07 5.9E-12 79.7 13.9 181 3-188 62-244 (244)
40 KOG1441 Glucose-6-phosphate/ph 98.7 7.7E-09 1.7E-13 92.0 2.9 183 1-204 126-314 (316)
41 TIGR00803 nst UDP-galactose tr 98.6 2.8E-07 6E-12 78.0 10.5 189 2-194 22-221 (222)
42 KOG1581 UDP-galactose transpor 98.6 2.3E-07 5E-12 81.2 9.8 187 1-201 126-317 (327)
43 COG0697 RhaT Permeases of the 98.6 4.9E-06 1.1E-10 71.7 16.6 141 57-201 6-147 (292)
44 COG2962 RarD Predicted permeas 98.5 5.2E-06 1.1E-10 72.4 13.9 139 57-198 6-145 (293)
45 PRK10452 multidrug efflux syst 98.4 5.8E-06 1.3E-10 63.7 11.5 69 131-199 36-105 (120)
46 TIGR00776 RhaT RhaT L-rhamnose 98.4 8.3E-06 1.8E-10 72.1 13.8 131 59-198 2-137 (290)
47 KOG3912 Predicted integral mem 98.3 5.8E-06 1.2E-10 71.9 10.3 182 4-196 132-333 (372)
48 PRK10532 threonine and homoser 98.3 4.5E-05 9.8E-10 67.2 15.9 127 56-196 10-136 (293)
49 KOG1444 Nucleotide-sugar trans 98.3 1.1E-05 2.4E-10 71.2 11.5 177 2-201 121-304 (314)
50 KOG1582 UDP-galactose transpor 98.2 1.9E-05 4.2E-10 68.5 11.4 181 3-200 151-335 (367)
51 PF06800 Sugar_transport: Suga 98.1 0.00013 2.8E-09 63.7 13.9 166 4-194 92-268 (269)
52 KOG1442 GDP-fucose transporter 98.1 2.8E-06 6.2E-11 73.6 3.4 190 3-210 147-340 (347)
53 PRK09541 emrE multidrug efflux 98.1 0.00012 2.7E-09 55.5 12.0 68 132-199 37-105 (110)
54 PF08449 UAA: UAA transporter 98.1 0.00016 3.5E-09 64.0 14.7 129 71-205 13-144 (303)
55 KOG1583 UDP-N-acetylglucosamin 98.0 7.4E-05 1.6E-09 65.0 10.0 184 2-196 109-313 (330)
56 KOG1443 Predicted integral mem 97.9 0.00013 2.7E-09 64.4 11.1 167 8-195 134-313 (349)
57 PF04657 DUF606: Protein of un 97.9 0.00085 1.8E-08 53.0 14.1 131 60-194 3-138 (138)
58 COG5070 VRG4 Nucleotide-sugar 97.8 9.8E-05 2.1E-09 62.5 8.1 136 55-191 152-290 (309)
59 PRK11431 multidrug efflux syst 97.8 0.00065 1.4E-08 51.2 11.4 66 132-197 36-102 (105)
60 PRK10650 multidrug efflux syst 97.8 0.00098 2.1E-08 50.5 12.5 65 132-196 42-107 (109)
61 PF06027 DUF914: Eukaryotic pr 97.7 0.0011 2.4E-08 59.8 14.2 139 57-200 16-154 (334)
62 PF05653 Mg_trans_NIPA: Magnes 97.7 0.0003 6.4E-09 62.6 10.1 119 55-197 4-122 (300)
63 COG2076 EmrE Membrane transpor 97.7 0.00035 7.5E-09 52.5 8.5 66 133-198 38-104 (106)
64 PF00893 Multi_Drug_Res: Small 97.6 0.00092 2E-08 49.1 9.5 57 132-188 36-93 (93)
65 PF05653 Mg_trans_NIPA: Magnes 97.4 0.00013 2.8E-09 64.9 3.7 69 132-200 220-295 (300)
66 PRK13499 rhamnose-proton sympo 97.3 0.0048 1E-07 55.9 12.5 136 56-198 5-154 (345)
67 KOG4510 Permease of the drug/m 97.3 0.00026 5.6E-09 61.4 4.0 136 55-199 35-171 (346)
68 PF06800 Sugar_transport: Suga 97.1 0.0071 1.5E-07 52.9 10.9 106 94-203 18-128 (269)
69 COG3238 Uncharacterized protei 97.1 0.028 6.1E-07 44.9 13.2 139 58-199 5-148 (150)
70 PF04142 Nuc_sug_transp: Nucle 96.8 0.0039 8.5E-08 53.8 7.2 66 137-202 29-94 (244)
71 PRK13499 rhamnose-proton sympo 96.7 0.28 6E-06 44.6 18.1 178 12-198 135-342 (345)
72 KOG1441 Glucose-6-phosphate/ph 96.2 0.0057 1.2E-07 54.8 4.0 120 73-195 32-153 (316)
73 KOG4314 Predicted carbohydrate 95.7 0.034 7.4E-07 46.6 6.2 175 3-199 98-278 (290)
74 COG4975 GlcU Putative glucose 95.7 0.0078 1.7E-07 51.8 2.5 133 59-201 3-140 (288)
75 PF07857 DUF1632: CEO family ( 95.2 0.17 3.6E-06 44.1 9.2 25 178-202 115-139 (254)
76 PF10639 UPF0546: Uncharacteri 94.9 0.1 2.2E-06 39.8 6.2 59 136-194 52-111 (113)
77 KOG4314 Predicted carbohydrate 94.6 0.04 8.7E-07 46.1 3.7 63 138-200 66-128 (290)
78 KOG2922 Uncharacterized conser 94.1 0.02 4.3E-07 51.0 0.9 122 53-198 16-137 (335)
79 PF02694 UPF0060: Uncharacteri 93.5 1.7 3.7E-05 32.7 10.1 38 163-200 69-106 (107)
80 PRK02237 hypothetical protein; 93.1 2.9 6.3E-05 31.5 11.7 38 163-200 71-108 (109)
81 KOG2765 Predicted membrane pro 92.6 0.12 2.6E-06 47.1 3.4 66 136-201 170-235 (416)
82 PF06379 RhaT: L-rhamnose-prot 92.2 3.3 7.1E-05 37.5 12.0 139 56-198 5-154 (344)
83 KOG2234 Predicted UDP-galactos 92.0 0.48 1E-05 42.8 6.5 59 140-198 107-165 (345)
84 KOG1580 UDP-galactose transpor 91.1 0.67 1.5E-05 40.0 6.1 128 68-201 23-161 (337)
85 PF04342 DUF486: Protein of un 90.0 0.34 7.5E-06 36.3 3.1 30 166-195 77-106 (108)
86 KOG1444 Nucleotide-sugar trans 89.9 5.4 0.00012 35.7 11.0 114 74-195 28-147 (314)
87 PF05977 MFS_3: Transmembrane 87.4 28 0.00061 33.4 16.3 42 155-196 350-391 (524)
88 COG3169 Uncharacterized protei 87.0 1 2.2E-05 33.4 3.8 32 166-197 84-115 (116)
89 COG5006 rhtA Threonine/homoser 86.8 21 0.00045 31.3 12.9 100 59-167 13-113 (292)
90 TIGR02840 spore_YtaF putative 85.6 1.6 3.4E-05 36.7 4.9 47 150-196 32-80 (206)
91 COG3086 RseC Positive regulato 84.9 1.8 4E-05 34.3 4.5 27 146-172 69-95 (150)
92 KOG2922 Uncharacterized conser 82.2 1.5 3.2E-05 39.4 3.3 76 123-199 226-308 (335)
93 PF04246 RseC_MucC: Positive r 82.0 2 4.3E-05 33.4 3.8 23 150-172 66-88 (135)
94 PF15099 PIRT: Phosphoinositid 81.8 0.58 1.3E-05 36.1 0.6 17 125-141 57-73 (129)
95 KOG3912 Predicted integral mem 81.7 3.5 7.5E-05 36.6 5.4 64 135-198 96-159 (372)
96 PF01102 Glycophorin_A: Glycop 80.9 1.8 3.8E-05 33.5 3.0 17 214-232 103-119 (122)
97 PF08507 COPI_assoc: COPI asso 77.8 4.8 0.0001 31.4 4.7 15 181-195 89-103 (136)
98 PF04306 DUF456: Protein of un 77.7 32 0.0007 27.0 10.0 73 123-205 32-105 (140)
99 PRK13108 prolipoprotein diacyl 75.1 30 0.00065 32.8 10.0 48 153-200 225-277 (460)
100 PRK09541 emrE multidrug efflux 74.5 1.1 2.5E-05 33.8 0.3 28 2-29 75-102 (110)
101 PRK10452 multidrug efflux syst 74.0 1.1 2.4E-05 34.4 0.2 28 2-29 75-102 (120)
102 PF03547 Mem_trans: Membrane t 73.1 71 0.0015 28.8 12.8 10 161-170 111-120 (385)
103 KOG1443 Predicted integral mem 71.7 13 0.00027 33.5 6.2 122 76-198 34-157 (349)
104 COG1742 Uncharacterized conser 70.2 20 0.00043 26.9 6.0 38 163-200 70-107 (109)
105 COG4975 GlcU Putative glucose 66.7 0.5 1.1E-05 40.9 -3.4 130 54-195 148-283 (288)
106 KOG1583 UDP-N-acetylglucosamin 65.9 6.6 0.00014 34.8 3.2 50 156-205 96-145 (330)
107 PRK11469 hypothetical protein; 64.7 9 0.0002 31.7 3.7 43 154-196 43-86 (188)
108 PRK10862 SoxR reducing system 64.2 7 0.00015 31.3 2.9 21 152-172 75-95 (154)
109 PRK12437 prolipoprotein diacyl 61.9 49 0.0011 28.9 8.0 48 152-199 205-257 (269)
110 PF13994 PgaD: PgaD-like prote 60.1 26 0.00057 27.4 5.4 20 184-203 68-87 (138)
111 PF11295 DUF3096: Protein of u 53.2 13 0.00028 22.7 2.0 32 162-193 1-32 (39)
112 TIGR00840 b_cpa1 sodium/hydrog 51.6 2.2E+02 0.0048 27.7 11.3 41 59-100 11-51 (559)
113 COG4657 RnfA Predicted NADH:ub 51.5 29 0.00063 28.3 4.3 27 3-29 90-123 (193)
114 KOG1442 GDP-fucose transporter 50.5 3.8 8.2E-05 36.2 -0.9 105 85-195 59-172 (347)
115 PF15108 TMEM37: Voltage-depen 49.8 90 0.0019 25.3 6.8 74 16-102 93-168 (184)
116 PF11044 TMEMspv1-c74-12: Plec 49.6 11 0.00024 23.7 1.4 15 178-192 3-17 (49)
117 PF02038 ATP1G1_PLM_MAT8: ATP1 49.4 15 0.00032 23.8 2.0 27 181-207 19-45 (50)
118 PRK00052 prolipoprotein diacyl 49.1 1E+02 0.0022 26.8 7.9 46 153-198 208-258 (269)
119 PF05297 Herpes_LMP1: Herpesvi 48.5 5.8 0.00013 35.1 0.0 25 135-159 118-142 (381)
120 TIGR00910 2A0307_GadC glutamat 46.6 2.6E+02 0.0057 26.5 12.3 16 87-102 331-346 (507)
121 KOG1581 UDP-galactose transpor 46.4 2.2E+02 0.0048 25.6 12.6 127 68-202 24-160 (327)
122 PF07444 Ycf66_N: Ycf66 protei 42.6 21 0.00046 25.7 2.1 33 175-207 3-35 (84)
123 PF03595 SLAC1: Voltage-depend 42.2 2.4E+02 0.0052 24.8 10.8 44 13-72 5-48 (330)
124 COG1971 Predicted membrane pro 41.9 38 0.00082 28.2 3.8 42 155-196 44-86 (190)
125 PRK06638 NADH:ubiquinone oxido 40.8 2.1E+02 0.0046 23.7 13.5 25 166-190 133-157 (198)
126 KOG1358 Serine palmitoyltransf 40.4 32 0.00069 32.0 3.4 55 174-228 15-80 (467)
127 COG2149 Predicted membrane pro 40.2 51 0.0011 25.3 3.9 61 129-210 26-89 (120)
128 PF06609 TRI12: Fungal trichot 39.4 3.9E+02 0.0084 26.4 15.4 27 4-30 230-256 (599)
129 TIGR00544 lgt prolipoprotein d 38.7 2E+02 0.0043 25.2 8.1 46 153-198 213-267 (278)
130 PF11755 DUF3311: Protein of u 38.6 84 0.0018 21.3 4.5 40 158-197 3-51 (66)
131 PF02659 DUF204: Domain of unk 37.8 61 0.0013 21.6 3.8 38 151-188 26-63 (67)
132 PF09656 PGPGW: Putative trans 37.8 1.2E+02 0.0025 19.9 5.2 45 14-83 5-49 (53)
133 KOG4831 Unnamed protein [Funct 37.5 49 0.0011 25.0 3.4 56 139-195 66-123 (125)
134 PRK11111 hypothetical protein; 36.8 1.2E+02 0.0025 25.7 6.1 24 172-195 70-94 (214)
135 PRK00159 putative septation in 36.1 1.3E+02 0.0029 21.7 5.4 56 122-197 30-85 (87)
136 PF01914 MarC: MarC family int 36.1 91 0.002 26.0 5.3 25 172-196 64-89 (203)
137 PF06781 UPF0233: Uncharacteri 35.9 66 0.0014 23.3 3.8 56 122-197 30-85 (87)
138 TIGR01167 LPXTG_anchor LPXTG-m 35.3 46 0.00099 18.9 2.5 17 178-194 11-27 (34)
139 PRK11902 ampG muropeptide tran 35.2 3.3E+02 0.0071 24.3 15.7 55 139-195 325-386 (402)
140 PRK11010 ampG muropeptide tran 35.0 3.8E+02 0.0083 25.0 16.1 54 144-197 344-401 (491)
141 TIGR00905 2A0302 transporter, 34.0 3.9E+02 0.0085 24.9 10.1 43 156-199 393-436 (473)
142 COG2814 AraJ Arabinose efflux 34.0 3.9E+02 0.0085 24.8 14.0 50 155-204 342-391 (394)
143 CHL00196 psbY photosystem II p 33.9 97 0.0021 18.6 3.6 18 59-76 7-24 (36)
144 PRK11652 emrD multidrug resist 33.1 3.4E+02 0.0075 23.9 15.7 20 151-170 333-352 (394)
145 PLN02822 serine palmitoyltrans 32.7 29 0.00064 32.8 2.1 49 170-218 27-82 (481)
146 PF06679 DUF1180: Protein of u 31.1 59 0.0013 26.4 3.2 14 217-230 138-151 (163)
147 COG4789 EscV Type III secretor 30.3 1.7E+02 0.0037 28.8 6.5 18 218-235 341-358 (689)
148 PRK05122 major facilitator sup 29.4 4E+02 0.0086 23.5 15.7 34 163-196 353-386 (399)
149 PF06298 PsbY: Photosystem II 29.1 1.3E+02 0.0028 18.1 3.6 20 59-78 7-26 (36)
150 KOG1631 Translocon-associated 28.9 58 0.0013 27.9 2.9 46 173-218 181-230 (261)
151 PF15202 Adipogenin: Adipogeni 28.9 88 0.0019 21.6 3.3 26 209-234 55-80 (81)
152 PRK02251 putative septation in 28.6 2.2E+02 0.0048 20.6 5.5 55 122-197 31-85 (87)
153 PF02487 CLN3: CLN3 protein; 28.6 4E+02 0.0086 24.9 8.6 18 11-28 89-106 (402)
154 PF15330 SIT: SHP2-interacting 28.3 84 0.0018 23.6 3.5 18 181-198 5-23 (107)
155 COG2034 Predicted membrane pro 28.2 67 0.0014 23.2 2.7 47 179-228 13-59 (85)
156 PLN02351 cytochromes b561 fami 27.9 4E+02 0.0087 23.1 17.3 17 180-196 201-217 (242)
157 COG3366 Uncharacterized protei 27.7 1.1E+02 0.0025 27.4 4.7 58 123-196 87-144 (311)
158 PRK09528 lacY galactoside perm 27.4 4.5E+02 0.0098 23.5 13.5 10 200-209 406-415 (420)
159 PF06946 Phage_holin_5: Phage 27.4 2.5E+02 0.0055 20.6 6.8 14 181-194 64-77 (93)
160 COG2095 MarC Multiple antibiot 27.4 2.4E+02 0.0051 23.7 6.4 28 172-199 67-95 (203)
161 PRK11357 frlA putative fructos 27.2 4.1E+02 0.0088 24.4 8.7 40 158-198 390-434 (445)
162 PF07214 DUF1418: Protein of u 27.2 1.5E+02 0.0033 21.8 4.5 8 182-189 50-57 (96)
163 PF11381 DUF3185: Protein of u 26.9 1.5E+02 0.0033 19.8 4.1 17 14-30 1-17 (59)
164 PF15102 TMEM154: TMEM154 prot 26.9 71 0.0015 25.4 2.9 14 186-199 70-83 (146)
165 PRK10489 enterobactin exporter 26.4 4.7E+02 0.01 23.3 11.4 19 177-195 175-193 (417)
166 PF12832 MFS_1_like: MFS_1 lik 26.1 2.2E+02 0.0049 19.6 6.1 47 124-170 7-53 (77)
167 PRK10644 arginine:agmatin anti 25.9 5.2E+02 0.011 23.7 11.6 18 156-173 385-402 (445)
168 PRK09556 uhpT sugar phosphate 25.7 5.2E+02 0.011 23.7 14.5 13 143-155 372-384 (467)
169 COG2271 UhpC Sugar phosphate p 25.1 1E+02 0.0022 29.1 4.1 44 160-204 168-212 (448)
170 PF11118 DUF2627: Protein of u 24.4 1.5E+02 0.0034 20.9 3.9 15 181-195 43-57 (77)
171 TIGR00966 3a0501s07 protein-ex 23.9 4.2E+02 0.009 22.6 7.5 43 150-193 122-164 (246)
172 COG0682 Lgt Prolipoprotein dia 23.4 2.7E+02 0.0058 24.8 6.2 79 127-205 192-280 (287)
173 PLN00028 nitrate transmembrane 23.0 6.1E+02 0.013 23.5 11.2 13 182-194 417-429 (476)
174 PRK13240 pbsY photosystem II p 22.9 1.8E+02 0.0039 17.9 3.6 18 59-76 7-24 (40)
175 PRK10489 enterobactin exporter 22.5 5.6E+02 0.012 22.9 15.9 37 161-197 361-398 (417)
176 PF07168 Ureide_permease: Urei 22.5 69 0.0015 28.8 2.4 129 64-195 2-144 (336)
177 PRK11562 nitrite transporter N 22.0 46 0.001 29.2 1.2 23 179-201 231-253 (268)
178 TIGR02004 PTS-IIBC-malX PTS sy 21.9 5.3E+02 0.012 24.8 8.4 36 124-161 342-377 (517)
179 PF04156 IncA: IncA protein; 21.4 3.1E+02 0.0068 22.0 6.0 24 182-205 47-70 (191)
180 PRK10435 cadB lysine/cadaverin 21.1 6.5E+02 0.014 23.1 11.9 41 156-198 384-424 (435)
181 TIGR00803 nst UDP-galactose tr 21.0 80 0.0017 26.1 2.4 43 156-198 9-51 (222)
182 PF01350 Flavi_NS4A: Flaviviru 20.9 4.3E+02 0.0094 21.0 8.8 63 139-205 62-124 (144)
183 PRK09579 multidrug efflux prot 20.8 4.8E+02 0.01 27.4 8.4 31 163-194 882-912 (1017)
184 PF01618 MotA_ExbB: MotA/TolQ/ 20.6 2.5E+02 0.0054 21.5 5.0 24 128-151 66-89 (139)
185 COG3247 HdeD Uncharacterized c 20.5 5E+02 0.011 21.5 14.8 61 133-196 112-176 (185)
186 PRK10110 bifunctional PTS syst 20.5 6.1E+02 0.013 24.5 8.5 64 124-196 351-414 (530)
187 COG3329 Predicted permease [Ge 20.1 4.3E+02 0.0093 24.0 6.7 15 218-232 190-204 (372)
No 1
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.98 E-value=5.6e-31 Score=238.23 Aligned_cols=225 Identities=38% Similarity=0.685 Sum_probs=167.8
Q ss_pred CccceeeccCCCcchhhHHHhHHhHHHHHHhcCCCccCCCC-cccc--ccc--cCcccCcchhhHHHHHHHHHHHHHHHH
Q 026497 1 MEKLKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRL-DIAS--LDQ--IQPLQSNWILGGFYLAAQAILISAWYI 75 (237)
Q Consensus 1 ~e~~~lrer~s~~~~~Gi~la~~Gv~ll~~~~g~~~~~~~~-~~~~--~~~--~~~~~~~~~~G~ll~llaa~~~a~y~v 75 (237)
+|++.+|||+++++++|++++++|+.++..++++.....++ ++-+ .+. ......++..|++++++++++||+|++
T Consensus 127 ~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~i 206 (358)
T PLN00411 127 MEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPPYLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFI 206 (358)
T ss_pred hchhhhcccccHHHHHHHHHHHHHHHHHHHccCcccccccccccccccccccccCCCcccHHHHHHHHHHHHHHHHHHHH
Confidence 47888999999999999999999999887555432100000 0000 000 011122345699999999999999999
Q ss_pred HHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhccc-cccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhccChhhh
Q 026497 76 LQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTE-LSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYV 154 (237)
Q Consensus 76 ~~~~~~~~~~~~~~~t~~~~~~g~l~~~~~~~~~~~~-~~~~~~~~~~~~~~llylgi~~t~la~~l~~~~l~~~~a~~~ 154 (237)
++|+..+++++....++|++.++++.+.+.++..+++ ...|...+......++|.+++ +.++|.+|++++++.||+++
T Consensus 207 l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~y~~i~-t~lay~lw~~~v~~~ga~~a 285 (358)
T PLN00411 207 LQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDITLITIVTMAII-TSVYYVIHSWTVRHKGPLYL 285 (358)
T ss_pred HHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchHHHHHHHHHHH-HHHHHHHHHHHHhccCchHH
Confidence 9999988887566888999999988888777766542 223322222335568898876 67899999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhcccccccccccccCCCCCccccccccccCCCcccc
Q 026497 155 SMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAKEENTIDDRGTWSSELSSEKVPLLQNSTEDT 231 (237)
Q Consensus 155 s~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (237)
+++.+++|++++++|++++||++++.+++|+++|+.|++++.+++++|.++.++.| ..+|+-|++-|..||.
T Consensus 286 s~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 357 (358)
T PLN00411 286 AIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGKANEEKDQLLSF-----SGKEKTPLLLNGKNDQ 357 (358)
T ss_pred HHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhhhcccCc-----cccccchhhhhccccc
Confidence 99999999999999999999999999999999999999999887655533333222 2456677766655554
No 2
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.94 E-value=1.4e-25 Score=198.20 Aligned_cols=183 Identities=15% Similarity=0.144 Sum_probs=145.5
Q ss_pred ccceeeccCCCcchhhHHHhHHhHHHHHHhcCCCccCCCCccccccccCcccCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 026497 2 EKLKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITL 81 (237)
Q Consensus 2 e~~~lrer~s~~~~~Gi~la~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~llaa~~~a~y~v~~~~~~ 81 (237)
+++++|||+++++++|++++++|+.++. ..+. .+......|+++.++++++|++|++++||..
T Consensus 104 ~~~~l~e~~~~~~~~~~~l~~~Gv~ll~-~~~~----------------~~~~~~~~G~~l~l~aal~~a~~~v~~~~~~ 166 (299)
T PRK11453 104 GAFTFGERLQGKQLAGIALAIFGVLVLI-EDSL----------------NGQHVAMLGFMLTLAAAFSWACGNIFNKKIM 166 (299)
T ss_pred HHHHhcCcCcHHHHHHHHHHHHhHHHhc-cccC----------------CCcchhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5678999999999999999999998875 2110 0111124699999999999999999999986
Q ss_pred hhcch--HHHHHHHHHHHHHHHHHHHHHHhccccc---cccccchhhHHHHHHHHHHHHHHHHHHHHHHHhccChhhhhh
Q 026497 82 KEFPA--LIVMLCYQYFFSTILAAMFSLTVVTELS---AWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSM 156 (237)
Q Consensus 82 ~~~~~--~~~~t~~~~~~g~l~~~~~~~~~~~~~~---~~~~~~~~~~~~llylgi~~t~la~~l~~~~l~~~~a~~~s~ 156 (237)
++.++ ....+.++++.+.+.+...+...+++.. .+...+...|..++|+++++|+++|.+|++++++.++++++.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i~~t~~~~~l~~~~l~~~~a~~~s~ 246 (299)
T PRK11453 167 SHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLAFVATIVGYGIWGTLLGRYETWRVAP 246 (299)
T ss_pred cccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 65432 3455667777776666655544443211 111112246889999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhccccc
Q 026497 157 FKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAK 201 (237)
Q Consensus 157 ~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~~~~~ 201 (237)
+.+++|++++++|++++||++++.+++|+++|+.|+++..++++.
T Consensus 247 ~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~~~ 291 (299)
T PRK11453 247 LSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGLRW 291 (299)
T ss_pred HHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcchhh
Confidence 999999999999999999999999999999999999998877653
No 3
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.92 E-value=4.2e-24 Score=188.63 Aligned_cols=182 Identities=9% Similarity=0.032 Sum_probs=134.7
Q ss_pred ccceeeccCCCcchhhHHHhHHhHHHHHHhcCCCccCCCCccccccccCcccCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 026497 2 EKLKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITL 81 (237)
Q Consensus 2 e~~~lrer~s~~~~~Gi~la~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~llaa~~~a~y~v~~~~~~ 81 (237)
.++++|||+++++++|++++++|++++.. .+..... ++...+..+...|++++++++++||+|+++.||+.
T Consensus 109 ~~~~~~e~~~~~~~~g~~l~~~Gv~li~~-~~~~~~~--------~~~~~~~~~~~~G~~~~l~aa~~~A~~~v~~k~~~ 179 (295)
T PRK11689 109 AVLFNGQKANWLLIPGLLLALAGVAWVLG-GDNGLSL--------AELINNIASNPLSYGLAFIGAFIWAAYCNVTRKYA 179 (295)
T ss_pred HHHHhcCCccHHHHHHHHHHHHhHhheec-CCccchh--------hhhhhccccChHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 35678999999999999999999988752 2111100 00000001224699999999999999999999987
Q ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhccChhhhhhhhhhH
Q 026497 82 KEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLA 161 (237)
Q Consensus 82 ~~~~~~~~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~llylgi~~t~la~~l~~~~l~~~~a~~~s~~~~l~ 161 (237)
++++ +.... ...+++.+.+.....+.+...+ +...|..++|.+ ++++++|.+|++++|+.+|++++.+.+++
T Consensus 180 ~~~~-~~~~~---~~~~~~~l~~~~~~~~~~~~~~---~~~~~~~l~~~~-~~t~~~~~l~~~al~~~~a~~~s~~~~l~ 251 (295)
T PRK11689 180 RGKN-GITLF---FILTALALWIKYFLSPQPAMVF---SLPAIIKLLLAA-AAMGFGYAAWNVGILHGNMTLLATASYFT 251 (295)
T ss_pred CCCC-chhHH---HHHHHHHHHHHHHHhcCccccC---CHHHHHHHHHHH-HHHHHHHHHHHHHHHccCHHHHHHHHHhH
Confidence 6664 55432 2333444444333322211111 124577888888 48999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhcccc
Q 026497 162 ILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKA 200 (237)
Q Consensus 162 Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~~~~ 200 (237)
|++++++|++++||++++.+++|+++|+.|+++..++++
T Consensus 252 Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~~~ 290 (295)
T PRK11689 252 PVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLATR 290 (295)
T ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhhHh
Confidence 999999999999999999999999999999988766543
No 4
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.91 E-value=4.8e-23 Score=181.55 Aligned_cols=172 Identities=16% Similarity=0.204 Sum_probs=142.7
Q ss_pred eeccCCCcchhhHHHhHHhHHHHHHhcCCCccCCCCccccccccCcccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 026497 6 WRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLKEFP 85 (237)
Q Consensus 6 lrer~s~~~~~Gi~la~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~llaa~~~a~y~v~~~~~~~~~~ 85 (237)
+|||+++++++|++++++|+.++.. ++. . .....|+++.++++++||+|++..||..++
T Consensus 117 ~~e~~~~~~~~~~~la~~Gv~ll~~-~~~-----------------~-~~~~~G~l~~l~a~~~~a~~~~~~~~~~~~-- 175 (292)
T PRK11272 117 FGIRTRKLEWLGIAIGLAGIVLLNS-GGN-----------------L-SGNPWGAILILIASASWAFGSVWSSRLPLP-- 175 (292)
T ss_pred hcccCchhHHHHHHHHHHhHHHHhc-Ccc-----------------c-ccchHHHHHHHHHHHHHHHHHHHHHhcCCC--
Confidence 6999999999999999999988752 110 1 122469999999999999999999987543
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhccChhhhhhhhhhHHHHH
Q 026497 86 ALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFS 165 (237)
Q Consensus 86 ~~~~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~llylgi~~t~la~~l~~~~l~~~~a~~~s~~~~l~Pv~a 165 (237)
++...+++++.++++.+.+.....+.+.. ...+...|..++|+++++|+++|.+|++++++.++++++.+.+++|+++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a 253 (292)
T PRK11272 176 VGMMAGAAEMLAAGVVLLIASLLSGERLT--ALPTLSGFLALGYLAVFGSIIAISAYMYLLRNVRPALATSYAYVNPVVA 253 (292)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHcCCccc--ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Confidence 24667789999999988887665433211 1112246889999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCcchhhHHHHHHHHHHHhhhhcccc
Q 026497 166 TVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKA 200 (237)
Q Consensus 166 ~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~~~~ 200 (237)
++++++++||++++.+++|+++|+.|+++..++++
T Consensus 254 ~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~~ 288 (292)
T PRK11272 254 VLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGKY 288 (292)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999998766544
No 5
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.90 E-value=2.7e-22 Score=176.87 Aligned_cols=170 Identities=11% Similarity=0.081 Sum_probs=133.4
Q ss_pred eccCCCcchhhHHHhHHhHHHHHHhcCCCccCCCCccccccccCcccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcch
Q 026497 7 RSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLKEFPA 86 (237)
Q Consensus 7 rer~s~~~~~Gi~la~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~llaa~~~a~y~v~~~~~~~~~~~ 86 (237)
+||++ +..++.++++|+.++. ..+.+ .+.....|+++.++++++|+.|+++.||..++++
T Consensus 116 ~~~~~--~~~~~~i~~~Gv~li~-~~~~~----------------~~~~~~~G~ll~l~aa~~~a~~~v~~r~~~~~~~- 175 (293)
T PRK10532 116 SRRPV--DFVWVVLAVLGLWFLL-PLGQD----------------VSHVDLTGAALALGAGACWAIYILSGQRAGAEHG- 175 (293)
T ss_pred cCChH--HHHHHHHHHHHHheee-ecCCC----------------cccCChHHHHHHHHHHHHHHHHHHHHHHHhccCC-
Confidence 35554 4567788999998875 21211 1112346999999999999999999999877764
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhccChhhhhhhhhhHHHHHH
Q 026497 87 LIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFST 166 (237)
Q Consensus 87 ~~~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~llylgi~~t~la~~l~~~~l~~~~a~~~s~~~~l~Pv~a~ 166 (237)
+... .++.+++++++.++....+.. ..+ ....|..++|+|+++|+++|.+|++++++.+|++++.+.+++|++++
T Consensus 176 ~~~~-~~~~~~~~~~l~~~~~~~~~~-~~~---~~~~~~~~l~lgv~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~ 250 (293)
T PRK10532 176 PATV-AIGSLIAALIFVPIGALQAGE-ALW---HWSILPLGLAVAILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAA 250 (293)
T ss_pred chHH-HHHHHHHHHHHHHHHHHccCc-ccC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHH
Confidence 5665 567777887777776543321 111 11346677899999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCcchhhHHHHHHHHHHHhhhhccccc
Q 026497 167 VMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAK 201 (237)
Q Consensus 167 ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~~~~~ 201 (237)
++|++++||++++.+++|+++|+.|++...++.++
T Consensus 251 l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~~ 285 (293)
T PRK10532 251 VSGMIFLGETLTLIQWLALGAIIAASMGSTLTIRR 285 (293)
T ss_pred HHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999888766544
No 6
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.89 E-value=1.3e-22 Score=179.41 Aligned_cols=179 Identities=15% Similarity=0.120 Sum_probs=136.5
Q ss_pred ccceeeccCCCcchhhHHHhHHhHHHHHHhcCCCccCCCCccccccccCcccCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 026497 2 EKLKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITL 81 (237)
Q Consensus 2 e~~~lrer~s~~~~~Gi~la~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~llaa~~~a~y~v~~~~~~ 81 (237)
+++++|||+++++++|++++++|+++.. . + + . +....|+++.++++++|++|+++.||..
T Consensus 109 ~~~~~~e~~~~~~~~~l~l~~~Gv~l~~-~-~-~----------------~-~~~~~G~~~~l~a~~~~a~~~v~~k~~~ 168 (302)
T TIGR00817 109 SAFFLGQEFPSTLWLSLLPIVGGVALAS-D-T-E----------------L-SFNWAGFLSAMISNITFVSRNIFSKKAM 168 (302)
T ss_pred HHHHhCCCCcHHHHHHHHHHHHHHhhhc-C-C-c----------------c-cccHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5688999999999999999999997643 1 1 0 1 1224699999999999999999999987
Q ss_pred h--hcchHHHHHHHHHHHHHHHHHHHHHHhccccc---ccccc-chhhHHHHHHHHHHHHHHHHH----HHHHHHhccCh
Q 026497 82 K--EFPALIVMLCYQYFFSTILAAMFSLTVVTELS---AWKLR-LDVGLFAIAYSAVIGAAFLTT----LLLWCLMRAGP 151 (237)
Q Consensus 82 ~--~~~~~~~~t~~~~~~g~l~~~~~~~~~~~~~~---~~~~~-~~~~~~~llylgi~~t~la~~----l~~~~l~~~~a 151 (237)
+ ++ ++.+++.|++.++++.+.|+....++... .+... +......+.+..++.+..++. ++++++++.+|
T Consensus 169 ~~~~~-~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~sa 247 (302)
T TIGR00817 169 TIKSL-DKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVAAMGFFHFYQQVAFMLLGRVSP 247 (302)
T ss_pred ccCCC-CcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence 7 66 47999999999999999998876653211 11000 000011122223333333444 55589999999
Q ss_pred hhhhhhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhccccc
Q 026497 152 LYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAK 201 (237)
Q Consensus 152 ~~~s~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~~~~~ 201 (237)
++++++.+++|++++++|++++||++++.+++|+++++.|+++..+.|++
T Consensus 248 ~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k~~ 297 (302)
T TIGR00817 248 LTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVKAQ 297 (302)
T ss_pred hHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999998766543
No 7
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.88 E-value=9.7e-22 Score=169.24 Aligned_cols=168 Identities=20% Similarity=0.234 Sum_probs=140.9
Q ss_pred ccceeeccCCCcchhhHHHhHHhHHHHHHhcCCCccCCCCccccccccCcccCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 026497 2 EKLKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITL 81 (237)
Q Consensus 2 e~~~lrer~s~~~~~Gi~la~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~llaa~~~a~y~v~~~~~~ 81 (237)
..+++|||+++++++|++++++|+.++. .++. ......|+++.++++++|+.|.++.|+..
T Consensus 91 ~~l~~~e~~~~~~~~gi~i~~~Gv~li~-~~~~------------------~~~~~~G~~~~l~a~~~~a~~~~~~k~~~ 151 (260)
T TIGR00950 91 SDLMGKERPRKLVLLAAVLGLAGAVLLL-SDGN------------------LSINPAGLLLGLGSGISFALGTVLYKRLV 151 (260)
T ss_pred HHHHccCCCcHHHHHHHHHHHHhHHhhc-cCCc------------------ccccHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence 3578999999999999999999998875 2210 11235799999999999999999999987
Q ss_pred hhcc-hHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhccChhhhhhhhhh
Q 026497 82 KEFP-ALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPL 160 (237)
Q Consensus 82 ~~~~-~~~~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~llylgi~~t~la~~l~~~~l~~~~a~~~s~~~~l 160 (237)
++.+ .+...+.+++.++++.+.+.....++.. .+ ....|..++|++++++.++|.+|++++++.++++++.+.++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~~ 227 (260)
T TIGR00950 152 KKEGPELLQFTGWVLLLGALLLLPFAWFLGPNP-QA---LSLQWGALLYLGLIGTALAYFLWNKGLTLVDPSAASILALA 227 (260)
T ss_pred hcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCC-Cc---chHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 7653 2346666889999988888876544322 11 22457789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcchhhHHHHHHHHHHH
Q 026497 161 AILFSTVMGVIIFGDGLFLGSLVGAVIIVIGF 192 (237)
Q Consensus 161 ~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv 192 (237)
+|+++++++++++||++++.+++|+++++.|+
T Consensus 228 ~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 228 EPLVALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999986
No 8
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.86 E-value=1e-20 Score=167.06 Aligned_cols=169 Identities=11% Similarity=0.086 Sum_probs=122.9
Q ss_pred ccceeeccCCCcchhhHHHhHHhHHHHHHhcCCCccCCCCccccccccCcccCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 026497 2 EKLKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITL 81 (237)
Q Consensus 2 e~~~lrer~s~~~~~Gi~la~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~llaa~~~a~y~v~~~~~~ 81 (237)
+.+++|||+++++++|++++++|++++....+ + . .++.++++++||+|+++.|+..
T Consensus 117 ~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~~-------------------~-~----~~~~l~aa~~~a~~~i~~r~~~ 172 (296)
T PRK15430 117 GMIFLGERFRRMQWLAVILAICGVLVQLWTFG-------------------S-L----PIIALGLAFSFAFYGLVRKKIA 172 (296)
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcC-------------------C-c----cHHHHHHHHHHHHHHHHHHhcC
Confidence 46788999999999999999999988752110 1 1 2467889999999999988864
Q ss_pred hhc-chHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhccChhhhhhhhhh
Q 026497 82 KEF-PALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPL 160 (237)
Q Consensus 82 ~~~-~~~~~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~llylgi~~t~la~~l~~~~l~~~~a~~~s~~~~l 160 (237)
++. ......+.|++.++.....+.. ..+...+.. .+..+..+++.+.+.+.++|.+|++++++.+|++++.+.++
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~g~~t~i~~~~~~~a~~~~~a~~~s~~~~l 248 (296)
T PRK15430 173 VEAQTGMLIETMWLLPVAAIYLFAIA---DSSTSHMGQ-NPMSLNLLLIAAGIVTTVPLLCFTAAATRLRLSTLGFFQYI 248 (296)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHHc---cCCcccccC-CcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 321 1234555666666654433221 111111111 11123344444344788999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhcc
Q 026497 161 AILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWG 198 (237)
Q Consensus 161 ~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~~ 198 (237)
+|++++++|++++||++++.+++|+++|+.|+.+....
T Consensus 249 ~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~ 286 (296)
T PRK15430 249 GPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMD 286 (296)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998887766544
No 9
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.84 E-value=1.6e-20 Score=164.60 Aligned_cols=171 Identities=18% Similarity=0.209 Sum_probs=127.8
Q ss_pred ccceeeccCCCcchhhHHHhHHhHHHHHHhcCCCccCCCCccccccccCcccCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 026497 2 EKLKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITL 81 (237)
Q Consensus 2 e~~~lrer~s~~~~~Gi~la~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~llaa~~~a~y~v~~~~~~ 81 (237)
.++++|||+++++++|+.++++|++++.. ++ . .. ....|+.+.++++++|++|++..|+..
T Consensus 107 ~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~-~~--~---------------~~-~~~~g~~~~l~aal~~a~~~i~~k~~~ 167 (281)
T TIGR03340 107 ATLTLGETLSPLAWLGILIITLGLLVLGL-SR--F---------------AQ-HRRKAYAWALAAALGTAIYSLSDKAAA 167 (281)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHhc-cc--c---------------cc-cchhHHHHHHHHHHHHHHhhhhccccc
Confidence 45789999999999999999999988752 11 0 01 123588899999999999999988754
Q ss_pred hhcch---HHHHHHHHHHHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhccChhhhhhhh
Q 026497 82 KEFPA---LIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFK 158 (237)
Q Consensus 82 ~~~~~---~~~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~llylgi~~t~la~~l~~~~l~~~~a~~~s~~~ 158 (237)
++.++ ....+.+++..+++.+.+.....+... +. .....+..++|.+.++++++|.+|++++++.++++++.+.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~s~l~~~l~~~al~~~~a~~~~~~~ 244 (281)
T TIGR03340 168 LGVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGRS--MF-PYARQILPSATLGGLMIGGAYALVLWAMTRLPVATVVALR 244 (281)
T ss_pred cchhcccccHHHHHHHHHHHHHHHHHHHHHHhccc--hh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCceEEEeec
Confidence 43321 122334444443333322222112211 11 1123466788999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhh
Q 026497 159 PLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYV 194 (237)
Q Consensus 159 ~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l 194 (237)
+++|++++++|++++||++++.+++|+++|+.|+++
T Consensus 245 ~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 245 NTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred ccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 999999999999999999999999999999999875
No 10
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.82 E-value=2.5e-19 Score=160.26 Aligned_cols=190 Identities=17% Similarity=0.202 Sum_probs=149.1
Q ss_pred ccceeeccCCCcchhhHHHhHHhHHHHHHhcCCCccCCCCccccccccCcccCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 026497 2 EKLKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITL 81 (237)
Q Consensus 2 e~~~lrer~s~~~~~Gi~la~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~llaa~~~a~y~v~~~~~~ 81 (237)
.++++|+|+++.+++|++++++|+.+++..+.... +++.++++...||++++++++.||+|+++.++..
T Consensus 123 S~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~-----------~~~~~~~~~i~GDll~l~~a~lya~~nV~~E~~v 191 (334)
T PF06027_consen 123 SFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLSG-----------SDSSSGSNPILGDLLALLGAILYAVSNVLEEKLV 191 (334)
T ss_pred HHHHHHhhhhHHHHHHHHHHHhhhhheeeeccccc-----------ccCCCCCccchhHHHHHHHHHHHHHHHHHHHHhc
Confidence 35789999999999999999999988865432110 1112345678999999999999999999999999
Q ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhccChhhhhhhhhhH
Q 026497 82 KEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLA 161 (237)
Q Consensus 82 ~~~~~~~~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~llylgi~~t~la~~l~~~~l~~~~a~~~s~~~~l~ 161 (237)
++.+ ...+.++..++|.++..+....+|.+... ..+++......+....++..+-|.+....++..+|+...+-..+.
T Consensus 192 ~~~~-~~~~lg~~Glfg~ii~~iq~~ile~~~i~-~~~w~~~~~~~~v~~~~~lf~~y~l~p~~l~~ssAt~~nLsLLTs 269 (334)
T PF06027_consen 192 KKAP-RVEFLGMLGLFGFIISGIQLAILERSGIE-SIHWTSQVIGLLVGYALCLFLFYSLVPIVLRMSSATFFNLSLLTS 269 (334)
T ss_pred ccCC-HHHHHHHHHHHHHHHHHHHHHheehhhhh-ccCCChhhHHHHHHHHHHHHHHHHHHHHHHHhCccceeehHHHHh
Confidence 9885 78889999999999998888777754210 111221222222222346677888899999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhcccccccc
Q 026497 162 ILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAKEEN 204 (237)
Q Consensus 162 Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~~~~~~~~ 204 (237)
.+++++.+++++|+++++..++|.++|++|+.+....++++++
T Consensus 270 d~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~~~~ 312 (334)
T PF06027_consen 270 DFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESPEEE 312 (334)
T ss_pred hHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCcccc
Confidence 9999999999999999999999999999999988776654433
No 11
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.80 E-value=1.1e-18 Score=157.83 Aligned_cols=176 Identities=14% Similarity=0.116 Sum_probs=139.7
Q ss_pred ccceeeccCCCcchhhHHHhHHhHHHHHHhcCCCccCCCCccccccccCcccCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 026497 2 EKLKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITL 81 (237)
Q Consensus 2 e~~~lrer~s~~~~~Gi~la~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~llaa~~~a~y~v~~~~~~ 81 (237)
+++++|||+++++++|++++++|+++.+. + + .+. ...|+++.++++++|++|+++.|+..
T Consensus 158 s~~~l~ek~s~~~~l~l~l~v~Gv~l~~~-~--~----------------~~~-~~~G~~~~l~s~~~~a~~~i~~k~~~ 217 (350)
T PTZ00343 158 SILFLKQFLNLYAYLSLIPIVGGVALASV-K--E----------------LHF-TWLAFWCAMLSNLGSSLRSIFAKKTM 217 (350)
T ss_pred HHHHhCCCccHHHHHHHHHHHHHHHheec-c--c----------------chh-HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56889999999999999999999988751 1 1 111 24699999999999999999999987
Q ss_pred hhcc------hHHHHHHHHHHHHHHHHHHHHHHhcccc--ccccc---c-chhhHHHHHHHHHHHHHHHHHHHHH----H
Q 026497 82 KEFP------ALIVMLCYQYFFSTILAAMFSLTVVTEL--SAWKL---R-LDVGLFAIAYSAVIGAAFLTTLLLW----C 145 (237)
Q Consensus 82 ~~~~------~~~~~t~~~~~~g~l~~~~~~~~~~~~~--~~~~~---~-~~~~~~~llylgi~~t~la~~l~~~----~ 145 (237)
++.+ ++..+..++..+|+++++|+..+.|... ..|.. . ....+..++|. ++.++++|.+|+. +
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~-i~~s~l~~~l~n~~~f~~ 296 (350)
T PTZ00343 218 KNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTKGIIIFK-IFFSGVWYYLYNEVAFYC 296 (350)
T ss_pred cccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccchHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 6532 2455666778899999999887665321 11100 0 01123445664 6678999999995 9
Q ss_pred HhccChhhhhhhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhcc
Q 026497 146 LMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWG 198 (237)
Q Consensus 146 l~~~~a~~~s~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~~ 198 (237)
+++++|.+.++..++.|++++++|++++||++++.+++|+++++.|+++..+-
T Consensus 297 l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~~ 349 (350)
T PTZ00343 297 LGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSLF 349 (350)
T ss_pred HhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999987653
No 12
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.76 E-value=5e-17 Score=140.54 Aligned_cols=170 Identities=19% Similarity=0.277 Sum_probs=131.9
Q ss_pred ceeeccCCCcchhhHHHhHHhHHHHHHhcCCCccCCCCccccccccCcccCc-chhhHHHHHHHHHHHHHHHHHHHHHHh
Q 026497 4 LKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSN-WILGGFYLAAQAILISAWYILQAITLK 82 (237)
Q Consensus 4 ~~lrer~s~~~~~Gi~la~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~G~ll~llaa~~~a~y~v~~~~~~~ 82 (237)
+++|||+++++++|++++++|++++... +. .+.. ...|+++.++++++|++|.+..|+..
T Consensus 117 ~~~~e~~~~~~~~~~~~~~~Gv~lv~~~-~~-----------------~~~~~~~~g~~~~l~a~~~~a~~~~~~~~~~- 177 (292)
T COG0697 117 LLLGERLSLLQILGILLALAGVLLILLG-GG-----------------GGGILSLLGLLLALAAALLWALYTALVKRLS- 177 (292)
T ss_pred HHccCCCcHHHHHHHHHHHHhHHheecC-CC-----------------cchhHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 4569999999999999999999888621 11 0011 35899999999999999999999877
Q ss_pred hcchHHHHHH-HHHHHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhccChhhhhhhhhhH
Q 026497 83 EFPALIVMLC-YQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLA 161 (237)
Q Consensus 83 ~~~~~~~~t~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~llylgi~~t~la~~l~~~~l~~~~a~~~s~~~~l~ 161 (237)
+.+ +..... +++. +.. ............ .. .....+..+.+.|+++++++|.+|++++++.++++++.+.+++
T Consensus 178 ~~~-~~~~~~~~~~~-~~~-~~~~~~~~~~~~--~~-~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 251 (292)
T COG0697 178 RLG-PVTLALLLQLL-LAL-LLLLLFFLSGFG--AP-ILSRAWLLLLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLE 251 (292)
T ss_pred CCC-hHHHHHHHHHH-HHH-HHHHHHHhcccc--cc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHH
Confidence 443 455555 5554 222 222221111111 11 1124578899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhcc
Q 026497 162 ILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWG 198 (237)
Q Consensus 162 Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~~ 198 (237)
|+++++++++++||+++..+++|+++++.|+.+...+
T Consensus 252 ~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 252 PVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999988766
No 13
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.65 E-value=1.3e-15 Score=116.01 Aligned_cols=125 Identities=15% Similarity=0.334 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 026497 68 ILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLM 147 (237)
Q Consensus 68 ~~~a~y~v~~~~~~~~~~~~~~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~llylgi~~t~la~~l~~~~l~ 147 (237)
++||.+.++.|+..++.+ +...++++++.+++ +.+...+.+... +.......+..+++.+++++++++.+|+++++
T Consensus 1 ~~~a~~~~~~k~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 76 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKKIS-PLSITFWRFLIAGI-LLILLLILGRKP--FKNLSPRQWLWLLFLGLLGTALAYLLYFYALK 76 (126)
T ss_pred ceeeeHHHHHHHHhccCC-HHHHHHHHHHHHHH-HHHHHHhhcccc--ccCCChhhhhhhhHhhccceehHHHHHHHHHH
Confidence 478999999999998875 89999999999998 666665554422 11112245778889999999999999999999
Q ss_pred ccChhhhhhhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhh
Q 026497 148 RAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVM 196 (237)
Q Consensus 148 ~~~a~~~s~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~ 196 (237)
+.++++++.+.+++|+++.+++++++||++++.+++|+++++.|+++..
T Consensus 77 ~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 77 YISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998764
No 14
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.60 E-value=1.5e-14 Score=124.85 Aligned_cols=139 Identities=8% Similarity=0.036 Sum_probs=97.1
Q ss_pred ccceeeccCCCcchhhHHHhHHhHHHHHHhcCCCccCCCCccccccccCcccCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 026497 2 EKLKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITL 81 (237)
Q Consensus 2 e~~~lrer~s~~~~~Gi~la~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~llaa~~~a~y~v~~~~~~ 81 (237)
+++++|||+++++++|++++++|++++...++ + . .++.++++++|++|.+..|+..
T Consensus 114 a~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~~-------------------~--~---~~~~l~aa~~~a~~~i~~~~~~ 169 (256)
T TIGR00688 114 GRVFLKERISRFQFIAVIIATLGVISNIVLKG-------------------S--L---PWEALVLAFSFTAYGLIRKALK 169 (256)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHcC-------------------C--c---hHHHHHHHHHHHHHHHHHhhcC
Confidence 46789999999999999999999988752110 1 1 1357889999999999988865
Q ss_pred hhcchHHHHHHHHHHHHHHHHHHHHH---HhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhccChhhhhhhh
Q 026497 82 KEFPALIVMLCYQYFFSTILAAMFSL---TVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFK 158 (237)
Q Consensus 82 ~~~~~~~~~t~~~~~~g~l~~~~~~~---~~~~~~~~~~~~~~~~~~~llylgi~~t~la~~l~~~~l~~~~a~~~s~~~ 158 (237)
++ + ...... +.+...+... ............+...|..++++|++ +.++|.+|++++++.+|++++++.
T Consensus 170 ~~-~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~-t~i~~~l~~~a~~~~~a~~~s~~~ 241 (256)
T TIGR00688 170 NT-D-LAGFCL-----ETLSLMPVAIYYLLQTDFATVQQTNPFPIWLLLVLAGLI-TGTPLLAFVIAANRLPLNLLGLLQ 241 (256)
T ss_pred CC-C-cchHHH-----HHHHHHHHHHHHHHHhccCcccccCchhHHHHHHHHHHH-HHHHHHHHHHHHHcCChHHHHHHH
Confidence 43 2 222221 1222222221 11111110111112357788888876 899999999999999999999999
Q ss_pred hhHHHHHHHHHHHH
Q 026497 159 PLAILFSTVMGVII 172 (237)
Q Consensus 159 ~l~Pv~a~ll~~l~ 172 (237)
|++|++++++|+++
T Consensus 242 yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 242 YIGPTIMMLCVSFL 255 (256)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999864
No 15
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.58 E-value=1.7e-14 Score=127.31 Aligned_cols=173 Identities=16% Similarity=0.207 Sum_probs=127.6
Q ss_pred cceeeccCCCcc----hhhHHHhHHhHHHHHHhcCCCccCCCCccccccccCcccCcchhhHHHHHHHHHHHHHHHHHHH
Q 026497 3 KLKWRSKSSQAK----SLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQA 78 (237)
Q Consensus 3 ~~~lrer~s~~~----~~Gi~la~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~llaa~~~a~y~v~~~ 78 (237)
.+++|||.++++ ++|+++.++|++++...++... + .....+...|.++.++++++|+.|.+..|
T Consensus 105 ~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~-----------~-~~~~~~~~~Gi~~~l~sg~~y~~~~~~~~ 172 (290)
T TIGR00776 105 VIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKSA-----------G-IKSEFNFKKGILLLLMSTIGYLVYVVVAK 172 (290)
T ss_pred HHHhhhccchHHHHHHHHHHHHHHHhHheEEecccccc-----------c-cccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999 9999999999877642211100 0 00002335799999999999999999988
Q ss_pred HHHhhcchHHHHHHH---HHHHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHh-ccChhhh
Q 026497 79 ITLKEFPALIVMLCY---QYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLM-RAGPLYV 154 (237)
Q Consensus 79 ~~~~~~~~~~~~t~~---~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~llylgi~~t~la~~l~~~~l~-~~~a~~~ 154 (237)
+. +++ |+..++. .+++++....+.. .... ++. ....+..++ .|++ +.++|.+|..+.+ +.+++++
T Consensus 173 ~~--~~~-~~~~~~~~~~g~~~~~~~~~~~~--~~~~--~~~--~~~~~~~~~-~Gi~-~~ia~~~y~~~~~~~~~~~~~ 241 (290)
T TIGR00776 173 AF--GVD-GLSVLLPQAIGMVIGGIIFNLGH--ILAK--PLK--KYAILLNIL-PGLM-WGIGNFFYLFSAQPKVGVATS 241 (290)
T ss_pred Hc--CCC-cceehhHHHHHHHHHHHHHHHHH--hccc--chH--HHHHHHHHH-HHHH-HHHHHHHHHHHcccccchhhH
Confidence 75 354 6777444 4444444333322 1111 121 112344555 8888 7999999999999 9999999
Q ss_pred hhhhhhHHHHHHHHHHHHhcCCcchhhH----HHHHHHHHHHhhhhcc
Q 026497 155 SMFKPLAILFSTVMGVIIFGDGLFLGSL----VGAVIIVIGFYVVMWG 198 (237)
Q Consensus 155 s~~~~l~Pv~a~ll~~l~lgE~l~~~~~----iG~~lIl~Gv~l~~~~ 198 (237)
+.+..++|+.+++++++++||+.+..|+ +|+++|+.|+.+....
T Consensus 242 ~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~~ 289 (290)
T TIGR00776 242 FSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGIG 289 (290)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999 9999999999876543
No 16
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=99.55 E-value=2.1e-13 Score=115.84 Aligned_cols=164 Identities=11% Similarity=0.049 Sum_probs=127.7
Q ss_pred cchhhHHHhHHhHHHHHHhcCCCccCCCCccccccccCcccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHH
Q 026497 13 AKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLKEFPALIVMLC 92 (237)
Q Consensus 13 ~~~~Gi~la~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~llaa~~~a~y~v~~~~~~~~~~~~~~~t~ 92 (237)
+..+-+.+++.|+.++.- .+++. ..-...|..+.+.+..||+.|++..+|.-+..+ ..+-++
T Consensus 120 ~d~vwvaLAvlGi~lL~p-~~~~~----------------~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~~~-g~~g~a 181 (292)
T COG5006 120 RDFVWVALAVLGIWLLLP-LGQSV----------------WSLDPVGVALALGAGACWALYIVLGQRAGRAEH-GTAGVA 181 (292)
T ss_pred hhHHHHHHHHHHHHhhee-ccCCc----------------CcCCHHHHHHHHHHhHHHHHHHHHcchhcccCC-CchHHH
Confidence 445566788899988752 22211 112257999999999999999999998875443 567778
Q ss_pred HHHHHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhccChhhhhhhhhhHHHHHHHHHHHH
Q 026497 93 YQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVII 172 (237)
Q Consensus 93 ~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~llylgi~~t~la~~l~~~~l~~~~a~~~s~~~~l~Pv~a~ll~~l~ 172 (237)
..+++++++..|+.....++ .-+ .+ .-...-+-.++++|++-|.+=..+++|+++..-+..+.+||.++.+.|+++
T Consensus 182 ~gm~vAaviv~Pig~~~ag~-~l~--~p-~ll~laLgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~ 257 (292)
T COG5006 182 VGMLVAALIVLPIGAAQAGP-ALF--SP-SLLPLALGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIF 257 (292)
T ss_pred HHHHHHHHHHhhhhhhhcch-hhc--Ch-HHHHHHHHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHH
Confidence 89999999999998743332 111 11 123345667899999999999999999999999999999999999999999
Q ss_pred hcCCcchhhHHHHHHHHHHHhhhhcc
Q 026497 173 FGDGLFLGSLVGAVIIVIGFYVVMWG 198 (237)
Q Consensus 173 lgE~l~~~~~iG~~lIl~Gv~l~~~~ 198 (237)
|||++++.|++|+++|+.+..=..+.
T Consensus 258 L~e~ls~~qwlaI~~ViaAsaG~~lt 283 (292)
T COG5006 258 LGETLTLIQWLAIAAVIAASAGSTLT 283 (292)
T ss_pred hcCCCCHHHHHHHHHHHHHHhccccc
Confidence 99999999999999999876544443
No 17
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.49 E-value=4.8e-13 Score=102.66 Aligned_cols=135 Identities=16% Similarity=0.184 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHH
Q 026497 60 GFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLT 139 (237)
Q Consensus 60 ~ll~llaa~~~a~y~v~~~~~~~~~~~~~~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~llylgi~~t~la~ 139 (237)
.++.++++++|++..++.|--.++.+ |..-|+....+..+++....+..++....-.. .+..|.-++..| +.+++++
T Consensus 5 ~~~ALLsA~fa~L~~iF~KIGl~~vd-p~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~-~~k~~lflilSG-la~glsw 81 (140)
T COG2510 5 IIYALLSALFAGLTPIFAKIGLEGVD-PDFATTIRTIVILIFLLIVLLVTGNWQAGGEI-GPKSWLFLILSG-LAGGLSW 81 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccC-ccHHHHHHHHHHHHHHHHHHHhcCceeccccc-CcceehhhhHHH-HHHHHHH
Confidence 57889999999999999888788774 77778887777777777766665532111011 235677788888 5899999
Q ss_pred HHHHHHHhccChhhhhhhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhc
Q 026497 140 TLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMW 197 (237)
Q Consensus 140 ~l~~~~l~~~~a~~~s~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~ 197 (237)
.+|++++++-.++++...--+-|++++++++++|||+++..+++|++||..|..++.+
T Consensus 82 l~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~ 139 (140)
T COG2510 82 LLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL 139 (140)
T ss_pred HHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence 9999999999999999999999999999999999999999999999999999887654
No 18
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.49 E-value=1.2e-12 Score=115.97 Aligned_cols=190 Identities=17% Similarity=0.218 Sum_probs=142.7
Q ss_pred CccceeeccCCCcchhhHHHhHHhHHHHHHhcCCCccCCCCccccccccCcccCcchhhHHHHHHHHHHHHHHHHHHHHH
Q 026497 1 MEKLKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAIT 80 (237)
Q Consensus 1 ~e~~~lrer~s~~~~~Gi~la~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~llaa~~~a~y~v~~~~~ 80 (237)
++.+++|+|+++++++++++-.+|+++....+..... +......++..|+++++++.++-+++.++++|.
T Consensus 107 ~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~----------~~~~~~~~~~~G~~ll~~sl~~~a~~~~~qe~~ 176 (303)
T PF08449_consen 107 LGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSS----------SSNSSSFSSALGIILLLLSLLLDAFTGVYQEKL 176 (303)
T ss_pred HHHHhcCccccHHHHHHHHHHHhhHheeeeccccccc----------ccccccccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578899999999999999999999887543221110 001111223349999999999999999999999
Q ss_pred Hhhcc-hHHHHHHHHHHHHHHHHHHHHHH--hccccccccc--cchhhHHHHHHHHHHHHHHHHHHHHHHHhccChhhhh
Q 026497 81 LKEFP-ALIVMLCYQYFFSTILAAMFSLT--VVTELSAWKL--RLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVS 155 (237)
Q Consensus 81 ~~~~~-~~~~~t~~~~~~g~l~~~~~~~~--~~~~~~~~~~--~~~~~~~~llylgi~~t~la~~l~~~~l~~~~a~~~s 155 (237)
.++++ ++.+...+..+++.+...+.... .++....+.. ..+..+..++... ++..++....++.+++.||...+
T Consensus 177 ~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s-~~~~~g~~~i~~~~~~~~al~~t 255 (303)
T PF08449_consen 177 FKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFS-LTGALGQFFIFYLIKKFSALTTT 255 (303)
T ss_pred HHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCchhhh
Confidence 87764 47889999999998888877766 2221111111 1112233444333 35667777778899999999999
Q ss_pred hhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhccccc
Q 026497 156 MFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAK 201 (237)
Q Consensus 156 ~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~~~~~ 201 (237)
+...+--+++++++++++|+++++.+++|.++++.|+.+..+.|++
T Consensus 256 ~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k 301 (303)
T PF08449_consen 256 IVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKK 301 (303)
T ss_pred hHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999999987776554
No 19
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.41 E-value=6.3e-13 Score=118.38 Aligned_cols=188 Identities=18% Similarity=0.219 Sum_probs=140.0
Q ss_pred ceeeccCCCcchhhHHHhHHhHHHHHHhcCCCccCCCCccccccccCcccCcchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 026497 4 LKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLKE 83 (237)
Q Consensus 4 ~~lrer~s~~~~~Gi~la~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~llaa~~~a~y~v~~~~~~~~ 83 (237)
++..||++..|+++++++++|+++++.++.... .+....+...|+++.+++|+.||+|+++.||...+
T Consensus 205 if~~e~ft~sKllav~~si~GViiVt~~~s~~~------------~~~~a~~~llG~llaL~sA~~YavY~vllk~~~~~ 272 (416)
T KOG2765|consen 205 IFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQN------------SDLPASRPLLGNLLALLSALLYAVYTVLLKRKIGD 272 (416)
T ss_pred HcCcchhhHHHHHHHHHhhccEEEEEecccccc------------ccCCccchhHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 455799999999999999999988764322110 11233456799999999999999999999987655
Q ss_pred cc---hHHHHHHHHHHHHHHHHHHHHHHhccc-cccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhccChhhhhhhhh
Q 026497 84 FP---ALIVMLCYQYFFSTILAAMFSLTVVTE-LSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKP 159 (237)
Q Consensus 84 ~~---~~~~~t~~~~~~g~l~~~~~~~~~~~~-~~~~~~~~~~~~~~llylgi~~t~la~~l~~~~l~~~~a~~~s~~~~ 159 (237)
.. +--.+-.+..++.-+++.|..++.+.- ...+..+.......+++.+.++|+++=++|.++.-..+|..+.+-+.
T Consensus 273 eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~~~ligtvvSDylW~~a~~lTs~Lv~TlgmS 352 (416)
T KOG2765|consen 273 EGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMS 352 (416)
T ss_pred ccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeHhhHHHHHHHHHHHHHHHHhccchhheeeee
Confidence 42 222233344444555555544433211 11222333345567788899999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhccccccc
Q 026497 160 LAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAKEE 203 (237)
Q Consensus 160 l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~~~~~~~ 203 (237)
++-..|++...++=|.++++.+++|.+.|++|.++++...+...
T Consensus 353 ltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~~~~ 396 (416)
T KOG2765|consen 353 LTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSENSK 396 (416)
T ss_pred EeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheeccccccc
Confidence 99999999999988999999999999999999999887755433
No 20
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.40 E-value=2.1e-11 Score=105.74 Aligned_cols=170 Identities=14% Similarity=0.149 Sum_probs=126.3
Q ss_pred ccceeeccCCCcchhhHHHhHHhHHHHHHhcCCCccCCCCccccccccCcccCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 026497 2 EKLKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITL 81 (237)
Q Consensus 2 e~~~lrer~s~~~~~Gi~la~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~llaa~~~a~y~v~~~~~~ 81 (237)
.++++|||+++.|++.+.++.+|+.......| +.. ...+.=+++|++|...-|+ .
T Consensus 116 G~lflkErls~~Q~iAV~lA~~GV~~~~~~~g-------------------~lp-----wval~la~sf~~Ygl~RK~-~ 170 (293)
T COG2962 116 GRLFLKERLSRLQWIAVGLAAAGVLIQTWLLG-------------------SLP-----WVALALALSFGLYGLLRKK-L 170 (293)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHHHHHHHcC-------------------CCc-----HHHHHHHHHHHHHHHHHHh-c
Confidence 46899999999999999999999988764322 111 2336667999999988443 3
Q ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhccChhhhhhhhhhH
Q 026497 82 KEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLA 161 (237)
Q Consensus 82 ~~~~~~~~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~llylgi~~t~la~~l~~~~l~~~~a~~~s~~~~l~ 161 (237)
+ .+ +.+-.+.-++.-....+.+.++.+.+..-........+..++..|+ .|++...+|..+-|+++-+..+.++|++
T Consensus 171 ~-v~-a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~~~~~~~LLv~aG~-vTavpL~lf~~aa~~lpls~~G~lqYi~ 247 (293)
T COG2962 171 K-VD-ALTGLTLETLLLLPVALIYLLFLADSGQFLQQNANSLWLLLVLAGL-VTAVPLLLFAAAAKRLPLSTLGFLQYIE 247 (293)
T ss_pred C-Cc-hHHhHHHHHHHHhHHHHHHHHHHhcCchhhhcCCchHHHHHHHhhH-HHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3 33 4555555555555555555555443321011011234556666676 6999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhccc
Q 026497 162 ILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGK 199 (237)
Q Consensus 162 Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~~~ 199 (237)
|..-.++|++++||+++..+.+..++|-.|+.+.....
T Consensus 248 Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d~ 285 (293)
T COG2962 248 PTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSIDG 285 (293)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998876543
No 21
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=99.33 E-value=2.1e-13 Score=116.06 Aligned_cols=177 Identities=15% Similarity=0.150 Sum_probs=137.3
Q ss_pred ccceeeccCCCcchhhHHHhHHhHHHHHHhcCCCccCCCCccccccccCcccCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 026497 2 EKLKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITL 81 (237)
Q Consensus 2 e~~~lrer~s~~~~~Gi~la~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~llaa~~~a~y~v~~~~~~ 81 (237)
.++|+|.|.++.|+.|+++|++|++++++++-.. .+..++++...||++++++|-+||+.++..+.+.
T Consensus 122 sw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~a------------gd~aggsnp~~GD~lvi~GATlYaVSNv~EEflv 189 (336)
T KOG2766|consen 122 SWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHA------------GDRAGGSNPVKGDFLVIAGATLYAVSNVSEEFLV 189 (336)
T ss_pred HHHHHHHHHhhheeeeEEeEecceEEEEEeeecc------------ccccCCCCCccCcEEEEecceeeeeccccHHHHH
Confidence 3678999999999999999999999887543111 2234567778999999999999999999999888
Q ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhhHHHHHHH-HHHHHHHHHHHHHHHHhccChhhhhhhhhh
Q 026497 82 KEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYS-AVIGAAFLTTLLLWCLMRAGPLYVSMFKPL 160 (237)
Q Consensus 82 ~~~~~~~~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~llyl-gi~~t~la~~l~~~~l~~~~a~~~s~~~~l 160 (237)
|+.+ ..+++....++|+++..+- +.++.+.. -..+|+ |-...|+ ..++..+-|.+.-..+|..+++...+-...
T Consensus 190 kn~d-~~elm~~lgLfGaIIsaIQ-~i~~~~~~-~tl~w~--~~i~~yl~f~L~MFllYsl~pil~k~~~aT~~nlslLT 264 (336)
T KOG2766|consen 190 KNAD-RVELMGFLGLFGAIISAIQ-FIFERHHV-STLHWD--SAIFLYLRFALTMFLLYSLAPILIKTNSATMFNLSLLT 264 (336)
T ss_pred hcCc-HHHHHHHHHHHHHHHHHHH-Hhhhccce-eeEeeh--HHHHHHHHHHHHHHHHHHhhHHheecCCceEEEhhHhH
Confidence 8875 7899999999999999887 44554311 112222 2222333 344556666777788999999999999988
Q ss_pred HHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhc
Q 026497 161 AILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMW 197 (237)
Q Consensus 161 ~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~ 197 (237)
.-.++++. ..+|-+++|...+..+.+..|+++...
T Consensus 265 sDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiYs~ 299 (336)
T KOG2766|consen 265 SDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIYST 299 (336)
T ss_pred HHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEeec
Confidence 99999888 678888999999999999999988643
No 22
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.32 E-value=8.6e-11 Score=103.80 Aligned_cols=137 Identities=12% Similarity=0.076 Sum_probs=109.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhcccccccc--ccchhhHHHHHHHHHH
Q 026497 56 WILGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWK--LRLDVGLFAIAYSAVI 133 (237)
Q Consensus 56 ~~~G~ll~llaa~~~a~y~v~~~~~~~~~~~~~~~t~~~~~~g~l~~~~~~~~~~~~~~~~~--~~~~~~~~~llylgi~ 133 (237)
...|.+++++++++|+...+..|.. .+.+ |.++.+++++++.+.+.++.....+.. ... ... .........+.+
T Consensus 6 ~~~g~~~~l~a~~~wg~~~~~~k~~-~~~~-~~~~~~~R~~~a~~~l~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~ 81 (296)
T PRK15430 6 TRQGVLLALAAYFIWGIAPAYFKLI-YYVP-ADEILTHRVIWSFFFMVVLMSICRQWS-YLKTLIQT-PQKIFMLAVSAV 81 (296)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHh-cCCC-HHHHHHHHHHHHHHHHHHHHHHHccHH-HHHHHHcC-HHHHHHHHHHHH
Confidence 4579999999999999999998764 5565 899999999999887776654332111 000 001 112223346677
Q ss_pred HHHHHHHHHHHHHhccChhhhhhhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhh
Q 026497 134 GAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVM 196 (237)
Q Consensus 134 ~t~la~~l~~~~l~~~~a~~~s~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~ 196 (237)
..++.+.+|++++++.+++.+++..++.|++.++++++++||+++..+++|.++.+.|+.+..
T Consensus 82 ~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~ 144 (296)
T PRK15430 82 LIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQL 144 (296)
T ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 788999999999999999999999999999999999999999999999999999999988764
No 23
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=99.24 E-value=3.2e-10 Score=88.62 Aligned_cols=121 Identities=16% Similarity=0.156 Sum_probs=91.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHH
Q 026497 59 GGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFL 138 (237)
Q Consensus 59 G~ll~llaa~~~a~y~v~~~~~~~~~~~~~~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~llylgi~~t~la 138 (237)
|.++++.+.++-+...++.|+=.++.+ ....... .+ ..... . . .....+|+|+++.+++
T Consensus 3 ~~~~i~~sv~l~~~gQl~~K~g~~~~g-~~~~~~~-----~~-~~~~~-~--~-----------~p~~~i~lgl~~~~la 61 (129)
T PRK02971 3 GYLWGLASVLLASVAQLSLKWGMSRLP-LLSHAWD-----FI-AALLA-F--G-----------LALRAVLLGLAGYALS 61 (129)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhCC-CccchhH-----HH-HHHHH-H--h-----------ccHHHHHHHHHHHHHH
Confidence 667888888888888888787666543 2221111 00 00000 0 0 0122578899999999
Q ss_pred HHHHHHHHhccChhhhhhhhhhHHHHHHHHHHH--HhcCCcchhhHHHHHHHHHHHhhhhcccc
Q 026497 139 TTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVI--IFGDGLFLGSLVGAVIIVIGFYVVMWGKA 200 (237)
Q Consensus 139 ~~l~~~~l~~~~a~~~s~~~~l~Pv~a~ll~~l--~lgE~l~~~~~iG~~lIl~Gv~l~~~~~~ 200 (237)
|.+|++++++.+++.+..+..+.++...+.++. ++||++++.+++|.++|++|++++.++++
T Consensus 62 ~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~~ 125 (129)
T PRK02971 62 MLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTT 125 (129)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCC
Confidence 999999999999999999999999999888885 89999999999999999999999876544
No 24
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.20 E-value=9.1e-10 Score=95.02 Aligned_cols=136 Identities=14% Similarity=0.179 Sum_probs=106.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhcccc---ccccccchhh-HHHHHHHHHH
Q 026497 58 LGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTEL---SAWKLRLDVG-LFAIAYSAVI 133 (237)
Q Consensus 58 ~G~ll~llaa~~~a~y~v~~~~~~~~~~~~~~~t~~~~~~g~l~~~~~~~~~~~~~---~~~~~~~~~~-~~~llylgi~ 133 (237)
.|.+++++++++|+...+..|. ..+.+ |.+++++.++++++.+.++.....+.. ..++...... +..+...|++
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~-~~~~~-~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 79 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKL-LKPLP-ATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLL 79 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHH-hccCC-HHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHH
Confidence 3788999999999999999887 44564 899999999999888776654432110 0111001112 3344555554
Q ss_pred HHHHHHHHHHHHHhccChhhhhhhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhh
Q 026497 134 GAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVM 196 (237)
Q Consensus 134 ~t~la~~l~~~~l~~~~a~~~s~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~ 196 (237)
..+.+.++++++++.+++.++...++.|++.+++++++++|+++..+++|.++.+.|+.+..
T Consensus 80 -~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~ 141 (256)
T TIGR00688 80 -IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNI 141 (256)
T ss_pred -HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 67889999999999999999999999999999999999999999999999999999987653
No 25
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.20 E-value=5.7e-10 Score=94.34 Aligned_cols=179 Identities=14% Similarity=0.156 Sum_probs=138.8
Q ss_pred ceeeccCCCcchhhHHHhHHhHHHHHHhcCCCccCCCCccccccccCcccCcchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 026497 4 LKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLKE 83 (237)
Q Consensus 4 ~~lrer~s~~~~~Gi~la~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~llaa~~~a~y~v~~~~~~~~ 83 (237)
++.|++.+++|...++.-++|+++.. ++..... +..+.....|.++.+++-..=+.....+.|....
T Consensus 131 l~~~KsY~w~kY~cVL~IV~GValFm-YK~~Kv~------------g~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~ 197 (337)
T KOG1580|consen 131 LFAHKSYHWRKYCCVLMIVVGVALFM-YKENKVG------------GAEDKTFGFGELLLILSLAMDGLTGSIQDRIRAS 197 (337)
T ss_pred hhhcccccHHHHHHHHHHHHHHHHhh-ccccccC------------CCcccccchHHHHHHHHHHhcccchhHHHHHHHh
Confidence 57889999999999999999998874 7633221 1223456789999999988888888888887655
Q ss_pred cc-hHHHHHHHHHHHHHHHHHHHHHHhccc--cccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhccChhhhhhhhhh
Q 026497 84 FP-ALIVMLCYQYFFSTILAAMFSLTVVTE--LSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPL 160 (237)
Q Consensus 84 ~~-~~~~~t~~~~~~g~l~~~~~~~~~~~~--~~~~~~~~~~~~~~llylgi~~t~la~~l~~~~l~~~~a~~~s~~~~l 160 (237)
+. ..-.++.+..+.+++.+....++.++- +..+...-+..|+-+..+++ +++++.++.+.-+...||-.-|+.+..
T Consensus 198 yq~~g~~MM~~~NlwStL~Lg~g~lfTGElweF~yF~~RhP~~~~~l~l~ai-~s~LGQ~fIF~tv~~FgPLtCSivTTT 276 (337)
T KOG1580|consen 198 YQRTGTSMMFYTNLWSTLYLGAGLLFTGELWEFFYFVQRHPYVFWDLTLLAI-ASCLGQWFIFKTVEEFGPLTCSIVTTT 276 (337)
T ss_pred hccCchhhHHHHHHHHHHHhhhhheehhhHHHHHHHHHhccHHHHHHHHHHH-HHHhhhHHHHHHHHHhCCeeEEEEeeh
Confidence 42 246777888888888877766655542 11111111234566666665 889999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhh
Q 026497 161 AILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVM 196 (237)
Q Consensus 161 ~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~ 196 (237)
--.|+++.++++++.+++..||+|.++++.++..=.
T Consensus 277 RKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~ 312 (337)
T KOG1580|consen 277 RKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADV 312 (337)
T ss_pred HHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHh
Confidence 999999999999999999999999999999987644
No 26
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.19 E-value=8.5e-10 Score=96.65 Aligned_cols=133 Identities=14% Similarity=0.205 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHH
Q 026497 60 GFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLT 139 (237)
Q Consensus 60 ~ll~llaa~~~a~y~v~~~~~~~~~~~~~~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~llylgi~~t~la~ 139 (237)
.++.++++++||.+.+..||..++.+ + ...+....+++.+.|+....... ..|.... ..+...+..+.+.....+
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~~~-~--~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~ 77 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADKEP-D--FLWWALLAHSVLLTPYGLWYLAQ-VGWSRLP-ATFWLLLAISAVANMVYF 77 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCchh-H--HHHHHHHHHHHHHHHHHHHhccc-CCCCCcc-hhhHHHHHHHHHHHHHHH
Confidence 36779999999999999998776532 3 34555566666776765542111 1222111 233434445556788899
Q ss_pred HHHHHHHhccChhhhhhhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhc
Q 026497 140 TLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMW 197 (237)
Q Consensus 140 ~l~~~~l~~~~a~~~s~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~ 197 (237)
.++++++++.+++.++++.+..|+++++++++++||+++..+++|.++++.|+.+...
T Consensus 78 ~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~ 135 (281)
T TIGR03340 78 LGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGL 135 (281)
T ss_pred HHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999987654
No 27
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=99.10 E-value=6e-09 Score=82.65 Aligned_cols=137 Identities=16% Similarity=0.203 Sum_probs=108.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhh------cchHHHHHHHHHHHHHHHHHHHHHHhccccc-c--cccc------chhh
Q 026497 59 GGFYLAAQAILISAWYILQAITLKE------FPALIVMLCYQYFFSTILAAMFSLTVVTELS-A--WKLR------LDVG 123 (237)
Q Consensus 59 G~ll~llaa~~~a~y~v~~~~~~~~------~~~~~~~t~~~~~~g~l~~~~~~~~~~~~~~-~--~~~~------~~~~ 123 (237)
|.++.+.+.++.|++.++.|+..++ ..++..+..+....+.+.+.+.+++.|+... . .... ....
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 6788999999999999999998766 2258999999999999999999988776421 0 0000 1122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccChhhhhhhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhh
Q 026497 124 LFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVM 196 (237)
Q Consensus 124 ~~~llylgi~~t~la~~l~~~~l~~~~a~~~s~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~ 196 (237)
+..++..|++ ..+-....++.+++.+|...++...+-.+...++|++++||++++.+++|.++.+.|+++..
T Consensus 81 ~~~~~~~~~~-~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ys 152 (153)
T PF03151_consen 81 IFLLILSGLL-AFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYS 152 (153)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheee
Confidence 3444444443 34555666789999999999999999999999999999999999999999999999987653
No 28
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=99.05 E-value=3.6e-11 Score=103.11 Aligned_cols=185 Identities=16% Similarity=0.156 Sum_probs=128.5
Q ss_pred ccceeeccCCCcchhhHHHhHHhHHHHHHhcCCCccCCCCccccccccCccc-CcchhhHHHHHHHHHHHHHHHHHHHHH
Q 026497 2 EKLKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQ-SNWILGGFYLAAQAILISAWYILQAIT 80 (237)
Q Consensus 2 e~~~lrer~s~~~~~Gi~la~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~G~ll~llaa~~~a~y~v~~~~~ 80 (237)
.++++|||+++...+|.++.+.|+++++ .|..-+ +++. ..+++++ .....|....+.+++.-|--.++.|+.
T Consensus 141 aw~~LkE~~t~~eaL~s~itl~GVVLIv---RPpFlF-G~~t---~g~~~s~~~~~~~gt~aai~s~lf~asvyIilR~i 213 (346)
T KOG4510|consen 141 AWAFLKEPFTKFEALGSLITLLGVVLIV---RPPFLF-GDTT---EGEDSSQVEYDIPGTVAAISSVLFGASVYIILRYI 213 (346)
T ss_pred HHHHHcCCCcHHHHHHHHHhhheEEEEe---cCCccc-CCCc---cccccccccccCCchHHHHHhHhhhhhHHHHHHHh
Confidence 4789999999999999999999999885 333221 1110 0111222 334568777788887777656666887
Q ss_pred HhhcchHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhccChhhhhhhhhh
Q 026497 81 LKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPL 160 (237)
Q Consensus 81 ~~~~~~~~~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~llylgi~~t~la~~l~~~~l~~~~a~~~s~~~~l 160 (237)
-|+.+ ......+-.+++.+...+.....+. ..|.. ....|+-++.+|++ ..++..+...++|+-.|.++++..+.
T Consensus 214 Gk~~h-~~msvsyf~~i~lV~s~I~~~~ig~--~~lP~-cgkdr~l~~~lGvf-gfigQIllTm~lQiErAGpvaim~~~ 288 (346)
T KOG4510|consen 214 GKNAH-AIMSVSYFSLITLVVSLIGCASIGA--VQLPH-CGKDRWLFVNLGVF-GFIGQILLTMGLQIERAGPVAIMTYT 288 (346)
T ss_pred hcccc-EEEEehHHHHHHHHHHHHHHhhccc--eecCc-cccceEEEEEehhh-hhHHHHHHHHHhhhhccCCeehhhHH
Confidence 67653 3333334344444444433322221 11211 12456667778886 47889999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhcc
Q 026497 161 AILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWG 198 (237)
Q Consensus 161 ~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~~ 198 (237)
+-++|.++-++++||.++++.+.|+++|+.+...+..+
T Consensus 289 dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a~~ 326 (346)
T KOG4510|consen 289 DVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVALK 326 (346)
T ss_pred HHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHHHH
Confidence 99999999999999999999999999999876655443
No 29
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.01 E-value=1.6e-08 Score=91.93 Aligned_cols=138 Identities=14% Similarity=0.137 Sum_probs=110.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHH
Q 026497 59 GGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFL 138 (237)
Q Consensus 59 G~ll~llaa~~~a~y~v~~~~~~~~~~~~~~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~llylgi~~t~la 138 (237)
-.+.+++.-++|+.+.++.|...+.--++..+.++-+.+++++++++.+..++... +.......|..+..+|+++ .+.
T Consensus 14 ~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~-~~~~~~~~~~~l~l~g~~g-~~~ 91 (358)
T PLN00411 14 FLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRS-LPPLSVSILSKIGLLGFLG-SMY 91 (358)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcc-cCcchHHHHHHHHHHHHHH-HHH
Confidence 45667788899999999989887663358899999999999999988876543211 1110112455666677777 566
Q ss_pred HHHHHHHHhccChhhhhhhhhhHHHHHHHHHHHH------hcCCcchhhHHHHHHHHHHHhhhhcc
Q 026497 139 TTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVII------FGDGLFLGSLVGAVIIVIGFYVVMWG 198 (237)
Q Consensus 139 ~~l~~~~l~~~~a~~~s~~~~l~Pv~a~ll~~l~------lgE~l~~~~~iG~~lIl~Gv~l~~~~ 198 (237)
+.++++++++.+|+.++++.++.|++.+++++++ ++|+++..+++|.++-+.|+.+....
T Consensus 92 ~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~ 157 (358)
T PLN00411 92 VITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFY 157 (358)
T ss_pred HHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHc
Confidence 7789999999999999999999999999999999 69999999999999999999876643
No 30
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.96 E-value=1.3e-08 Score=77.46 Aligned_cols=107 Identities=16% Similarity=0.334 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhccChhhhhhhhhhHHHHHHHHHHHH
Q 026497 93 YQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVII 172 (237)
Q Consensus 93 ~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~llylgi~~t~la~~l~~~~l~~~~a~~~s~~~~l~Pv~a~ll~~l~ 172 (237)
+.++++.+.+.++.....+....++......+...+..|+++...++.+|++++++.++ .++....+.|++++++++++
T Consensus 3 ~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~ 81 (113)
T PF13536_consen 3 FRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLF 81 (113)
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHH
Confidence 34455555555554443221111111011234445555777777999999999999995 88899999999999999999
Q ss_pred hcCCcchhhHHHHHHHHHHHhhhhcccc
Q 026497 173 FGDGLFLGSLVGAVIIVIGFYVVMWGKA 200 (237)
Q Consensus 173 lgE~l~~~~~iG~~lIl~Gv~l~~~~~~ 200 (237)
++|+++..+++|.++++.|+.+..+.+.
T Consensus 82 ~~er~~~~~~~a~~l~~~Gv~li~~~~~ 109 (113)
T PF13536_consen 82 FKERLSPRRWLAILLILIGVILIAWSDL 109 (113)
T ss_pred hcCCCCHHHHHHHHHHHHHHHHHhhhhc
Confidence 9999999999999999999998877643
No 31
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=98.96 E-value=4.7e-08 Score=86.17 Aligned_cols=131 Identities=15% Similarity=0.078 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHH
Q 026497 60 GFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLT 139 (237)
Q Consensus 60 ~ll~llaa~~~a~y~v~~~~~~~~~~~~~~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~llylgi~~t~la~ 139 (237)
.+..++..+.|+...+..|...+.. +|..++++.+.++++++.++....... . .....+...+..|++...+.+
T Consensus 10 ~~~~~~~~~iWg~~~~~~K~~~~~~-~p~~~~~~R~~~a~l~ll~~~~~~~~~---~--~~~~~~~~~~~~g~~~~~~~~ 83 (292)
T PRK11272 10 FGALFALYIIWGSTYLVIRIGVESW-PPLMMAGVRFLIAGILLLAFLLLRGHP---L--PTLRQWLNAALIGLLLLAVGN 83 (292)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhccC-CHHHHHHHHHHHHHHHHHHHHHHhCCC---C--CcHHHHHHHHHHHHHHHHHHH
Confidence 3456778899999999988777766 489999999999999888776542211 1 112345556667777777888
Q ss_pred HHHHHHH-hccChhhhhhhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhc
Q 026497 140 TLLLWCL-MRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMW 197 (237)
Q Consensus 140 ~l~~~~l-~~~~a~~~s~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~ 197 (237)
.+++++. ++.+++.+++..++.|++..+++++ +||+++..+++|.++.+.|+++...
T Consensus 84 ~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~ 141 (292)
T PRK11272 84 GMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNS 141 (292)
T ss_pred HHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhc
Confidence 8899999 9999999999999999999999985 7999999999999999999988754
No 32
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=98.94 E-value=2.1e-08 Score=86.10 Aligned_cols=119 Identities=13% Similarity=0.048 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 026497 70 ISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRA 149 (237)
Q Consensus 70 ~a~y~v~~~~~~~~~~~~~~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~llylgi~~t~la~~l~~~~l~~~ 149 (237)
|+...+..|...+...++.....+.++.+.+.+.+..... . ....+...+..+.++..+.+.++++++++.
T Consensus 1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~---~------~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~ 71 (260)
T TIGR00950 1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRRR---P------PLKRLLRLLLLGALQIGVFYVLYFVAVKRL 71 (260)
T ss_pred CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhc---c------CHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444555566555444578888888888888777654321 1 123455566677788889999999999999
Q ss_pred ChhhhhhhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhc
Q 026497 150 GPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMW 197 (237)
Q Consensus 150 ~a~~~s~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~ 197 (237)
+++.+++...+.|++..+++++++||++++.+++|.++.+.|+.+...
T Consensus 72 ~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~ 119 (260)
T TIGR00950 72 PVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLS 119 (260)
T ss_pred ChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhcc
Confidence 999999999999999999999999999999999999999999888654
No 33
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=98.90 E-value=7.6e-08 Score=85.09 Aligned_cols=127 Identities=14% Similarity=0.214 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHH
Q 026497 60 GFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLT 139 (237)
Q Consensus 60 ~ll~llaa~~~a~y~v~~~~~~~~~~~~~~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~llylgi~~t~la~ 139 (237)
.++.+++++.|+...+..|...++.+ |..++++.++++++.+.++.. .... .+..++..|++.....+
T Consensus 6 ~l~~l~~~~~Wg~~~~~~k~~~~~~~-p~~~~~~R~~~a~~~l~~~~~---~~~~--------~~~~~~~~g~~~~~~~~ 73 (299)
T PRK11453 6 GVLALLVVVVWGLNFVVIKVGLHNMP-PLMLAGLRFMLVAFPAIFFVA---RPKV--------PLNLLLGYGLTISFGQF 73 (299)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHhc---CCCC--------chHHHHHHHHHHHHHHH
Confidence 36688999999999999998777774 899999999988766554321 1100 12222333454455566
Q ss_pred HHHHHHHhc-cChhhhhhhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhcc
Q 026497 140 TLLLWCLMR-AGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWG 198 (237)
Q Consensus 140 ~l~~~~l~~-~~a~~~s~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~~ 198 (237)
.+++.++++ .+++.++++.++.|++..++++++++|+++..+++|.++.+.|+.+....
T Consensus 74 ~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~ 133 (299)
T PRK11453 74 AFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIED 133 (299)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccc
Confidence 677788887 68899999999999999999999999999999999999999999877643
No 34
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.87 E-value=4.9e-08 Score=74.37 Aligned_cols=66 Identities=15% Similarity=0.163 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHHhccChhhhhhhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhh
Q 026497 131 AVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVM 196 (237)
Q Consensus 131 gi~~t~la~~l~~~~l~~~~a~~~s~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~ 196 (237)
++++-++++.+|..++++.+.+.+.....+.|+.++++|++++||++++.+++|.++|+.|+.+..
T Consensus 43 ~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 43 ALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 346778899999999999999999999999999999999999999999999999999999998754
No 35
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.85 E-value=1.6e-07 Score=82.93 Aligned_cols=119 Identities=13% Similarity=0.108 Sum_probs=94.1
Q ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhccChh
Q 026497 73 WYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPL 152 (237)
Q Consensus 73 y~v~~~~~~~~~~~~~~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~llylgi~~t~la~~l~~~~l~~~~a~ 152 (237)
++++.|...+.++.|..++.+++.++++.+.+.......... .. ....|..++..|++. ++.+.++++++++.+++
T Consensus 17 ~~~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~g~~~-~~~~~~~~~~l~~~s~s 92 (302)
T TIGR00817 17 FNIYNKKLLNVFPYPYFKTLISLAVGSLYCLLSWSSGLPKRL--KI-SSALLKLLLPVAIVH-TIGHVTSNVSLSKVAVS 92 (302)
T ss_pred HHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCC--CC-CHHHHHHHHHHHHHH-HHHHHHHHHHHHhccHH
Confidence 456678777776669999999999988776554211111111 11 123566777778874 77789999999999999
Q ss_pred hhhhhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhh
Q 026497 153 YVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVV 195 (237)
Q Consensus 153 ~~s~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~ 195 (237)
.+++...+.|++.+++++++++|+++..+++|.++++.|+.+.
T Consensus 93 ~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~ 135 (302)
T TIGR00817 93 FTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALA 135 (302)
T ss_pred HHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999764
No 36
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.82 E-value=2.3e-07 Score=84.12 Aligned_cols=124 Identities=13% Similarity=0.135 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 026497 71 SAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAG 150 (237)
Q Consensus 71 a~y~v~~~~~~~~~~~~~~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~llylgi~~t~la~~l~~~~l~~~~ 150 (237)
..+++..|...+..|-|++++.++++++++.+.++...-........ .....+..++-+|++.... |...+.++++.+
T Consensus 62 ~~~~~~nK~vl~~~~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~llp~gl~~~~~-~~~~~~sl~~~s 139 (350)
T PTZ00343 62 VLYVVDNKLALNMLPLPWTISSLQLFVGWLFALLYWATGFRKIPRIK-SLKLFLKNFLPQGLCHLFV-HFGAVISMGLGA 139 (350)
T ss_pred HHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC-CHHHHHHHHHHHHHHHHHH-HHHHHHHHhhcc
Confidence 34566778878877558999999999998876555322111111111 1123456777788876554 777789999999
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhh
Q 026497 151 PLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVM 196 (237)
Q Consensus 151 a~~~s~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~ 196 (237)
++.+.+...++|++.+++++++++|++++.+++|.++++.|+.+..
T Consensus 140 vs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~ 185 (350)
T PTZ00343 140 VSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALAS 185 (350)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHhee
Confidence 9999999999999999999999999999999999999999998865
No 37
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=98.82 E-value=3.9e-07 Score=81.30 Aligned_cols=186 Identities=18% Similarity=0.156 Sum_probs=122.7
Q ss_pred cceeeccCCCcchhhHHHhHHhHHHHHHhcCCCccCCCCccccccccCcccCcchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 026497 3 KLKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLK 82 (237)
Q Consensus 3 ~~~lrer~s~~~~~Gi~la~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~llaa~~~a~y~v~~~~~~~ 82 (237)
.+++|+|++++||..+++-++|+.++-.....+. + ........+...|...++.+++.-++-.++-+|.+|
T Consensus 137 vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~------~---a~~~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK 207 (345)
T KOG2234|consen 137 VLILRRKLSRLQWMALVLLFAGVALVQLPSLSPT------G---AKSESSAQNPFLGLVAVLVACFLSGFAGVYFEKILK 207 (345)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCC------C---ccCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4679999999999999999999988742111100 0 000223456678999999999999999999999987
Q ss_pred hcchHHHH-HHHHHHHHHHHHHHHHHHhcccccccc----ccchhhHHHHHHHHHHHHHHHHHHHHHHHhccChhhhhhh
Q 026497 83 EFPALIVM-LCYQYFFSTILAAMFSLTVVTELSAWK----LRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMF 157 (237)
Q Consensus 83 ~~~~~~~~-t~~~~~~g~l~~~~~~~~~~~~~~~~~----~~~~~~~~~llylgi~~t~la~~l~~~~l~~~~a~~~s~~ 157 (237)
+-..++.+ +.-..++|.++.+...+..+.....|. -.+...|..++- .+++=.+-...+|+.+--.=+..
T Consensus 208 ~s~~s~wi~NiqL~~~g~~f~~l~~~~~d~~~i~~~gff~G~s~~vw~vVl~-----~a~gGLlvs~v~KyADnIlK~f~ 282 (345)
T KOG2234|consen 208 GSNVSLWIRNIQLYFFGILFNLLTILLQDGEAINEYGFFYGYSSIVWLVVLL-----NAVGGLLVSLVMKYADNILKGFS 282 (345)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHhhccccccccCCccccccHHHHHHHHH-----HhccchhHHHHHHHhHHHHHHHH
Confidence 64333333 333444555554444433332211121 111123444444 44444445555666665555555
Q ss_pred hhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhcccccc
Q 026497 158 KPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAKE 202 (237)
Q Consensus 158 ~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~~~~~~ 202 (237)
..+.-++..+.++.++|-+++....+|..+|+.++++....++++
T Consensus 283 ~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~~~P~~~ 327 (345)
T KOG2234|consen 283 TSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYSLYPARD 327 (345)
T ss_pred HHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhhcCCccc
Confidence 667778889999999999999999999999999999988666655
No 38
>PRK11689 aromatic amino acid exporter; Provisional
Probab=98.78 E-value=3.3e-07 Score=80.90 Aligned_cols=131 Identities=14% Similarity=0.008 Sum_probs=97.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHH
Q 026497 58 LGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAF 137 (237)
Q Consensus 58 ~G~ll~llaa~~~a~y~v~~~~~~~~~~~~~~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~llylgi~~t~l 137 (237)
.+.++.++++++|+...+..|...+..+ |..+.++.+.++++++.++. ..+ . +.. ..+..++ .+.+.-..
T Consensus 4 ~~~l~~l~a~~~Wg~~~~~~k~~~~~~~-P~~~~~~R~~~a~l~l~~~~---~~~-~-~~~---~~~~~~~-~~~l~~~~ 73 (295)
T PRK11689 4 KATLIGLIAILLWSTMVGLIRGVSESLG-PVGGAAMIYSVSGLLLLLTV---GFP-R-LRQ---FPKRYLL-AGGLLFVS 73 (295)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHccCC-hHHHHHHHHHHHHHHHHHHc---ccc-c-ccc---ccHHHHH-HHhHHHHH
Confidence 3577889999999999999998888875 89999999999988877642 111 1 110 0111122 22333334
Q ss_pred HHHHHHHHHh----ccChhhhhhhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhcc
Q 026497 138 LTTLLLWCLM----RAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWG 198 (237)
Q Consensus 138 a~~l~~~~l~----~~~a~~~s~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~~ 198 (237)
.+.+++.+++ ..++..++++.++.|++..++++++++|++++.+++|.++-+.|+.+....
T Consensus 74 ~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~ 138 (295)
T PRK11689 74 YEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGG 138 (295)
T ss_pred HHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecC
Confidence 4444555554 567888999999999999999999999999999999999999999876643
No 39
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=98.75 E-value=2.7e-07 Score=79.67 Aligned_cols=181 Identities=19% Similarity=0.185 Sum_probs=117.2
Q ss_pred cceeeccCCCcchhhHHHhHHhHHHHHHhcCCCccCCCCccccccccCcccCcchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 026497 3 KLKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLK 82 (237)
Q Consensus 3 ~~~lrer~s~~~~~Gi~la~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~llaa~~~a~y~v~~~~~~~ 82 (237)
++++|+|++++||+++++-++|+.++-.......... .....+ .+....+...|.+++++++++-++..++.+|.+|
T Consensus 62 ~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~~~~~--~~~~~~-~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK 138 (244)
T PF04142_consen 62 VLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQSSDNS--SSSSVH-HDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLK 138 (244)
T ss_pred HHHHHcccchhhHHHHHHHHHHHheeecCCccccccc--cccccc-cccccchhHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5789999999999999999999987642211110000 000000 0111234578999999999999999999999998
Q ss_pred hcch-HHHHHHHHHHHHHHHHHHHHHHhcccc-ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhccChhhhhhhhhh
Q 026497 83 EFPA-LIVMLCYQYFFSTILAAMFSLTVVTEL-SAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPL 160 (237)
Q Consensus 83 ~~~~-~~~~t~~~~~~g~l~~~~~~~~~~~~~-~~~~~~~~~~~~~llylgi~~t~la~~l~~~~l~~~~a~~~s~~~~l 160 (237)
+.+. ...-+.+..++|.++.++.....+.+. .....- ..+-...+..++..+++=.+-...+|+.+.-.=+.-..+
T Consensus 139 ~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~~g~f--~G~~~~~~~~i~~~a~gGllva~v~KyadnI~K~fa~a~ 216 (244)
T PF04142_consen 139 RSNVSLWIQNMQLYLFGILFNLLALLLSDGSAISESGFF--HGYSWWVWIVIFLQAIGGLLVAFVLKYADNIVKGFATAV 216 (244)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCch--hhcchHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHH
Confidence 7633 344455555666655555543333211 100000 011112233344555555666677888888877777888
Q ss_pred HHHHHHHHHHHHhcCCcchhhHHHHHHH
Q 026497 161 AILFSTVMGVIIFGDGLFLGSLVGAVII 188 (237)
Q Consensus 161 ~Pv~a~ll~~l~lgE~l~~~~~iG~~lI 188 (237)
.-+.+.+++++++|.+++....+|..+|
T Consensus 217 siv~t~~~s~~lf~~~~s~~f~lg~~~V 244 (244)
T PF04142_consen 217 SIVLTAVLSVLLFGFPPSLSFLLGAALV 244 (244)
T ss_pred HHHHHHHHHHHHhCCCCchHHhhheecC
Confidence 8899999999999999999999998764
No 40
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=98.70 E-value=7.7e-09 Score=92.04 Aligned_cols=183 Identities=17% Similarity=0.160 Sum_probs=134.8
Q ss_pred CccceeeccCCCcchhhHHHhHHhHHHHHHhcCCCccCCCCccccccccCcccCcchhhHHHHHHHHHHHHHHHHHHHHH
Q 026497 1 MEKLKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAIT 80 (237)
Q Consensus 1 ~e~~~lrer~s~~~~~Gi~la~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~llaa~~~a~y~v~~~~~ 80 (237)
+|+++.+|+.++..++.++.-..|+.+-.. .+ .+. ...|.+..+.+.++.+..+++.+++
T Consensus 126 ~~~~~~~~~~s~~~~lsL~piv~GV~ias~---~e----------------~~f-n~~G~i~a~~s~~~~al~~I~~~~l 185 (316)
T KOG1441|consen 126 LSVLLLGKTYSSMTYLSLLPIVFGVAIASV---TE----------------LSF-NLFGFISAMISNLAFALRNILSKKL 185 (316)
T ss_pred HHHHHhCCCCcceEEEEEEEeeeeEEEeee---cc----------------ccc-cHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 478899999999999999988888865431 11 122 3589999999999999999999998
Q ss_pred Hh--hc-chHHHHHHHHHHHHHHHHH-HHHHHhccccc-cccc-cchhhHHHHHHHHHHHHHHHHHHHHHHHhccChhhh
Q 026497 81 LK--EF-PALIVMLCYQYFFSTILAA-MFSLTVVTELS-AWKL-RLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYV 154 (237)
Q Consensus 81 ~~--~~-~~~~~~t~~~~~~g~l~~~-~~~~~~~~~~~-~~~~-~~~~~~~~llylgi~~t~la~~l~~~~l~~~~a~~~ 154 (237)
.+ +. -++..+..++.-++.+.++ |.....++... .+.. .+......+++.. ++...-....++.+++.+|..-
T Consensus 186 l~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-v~~f~~Nls~f~~ig~tSalT~ 264 (316)
T KOG1441|consen 186 LTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFLILLLNS-VLAFLLNLSAFLVIGRTSALTY 264 (316)
T ss_pred hhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhhHHHHHHH-HHHHHHHHHHHHHHcccCchhh
Confidence 84 22 1478888888888888888 77766554322 0011 1111223333333 1222223445688999999999
Q ss_pred hhhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhcccccccc
Q 026497 155 SMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAKEEN 204 (237)
Q Consensus 155 s~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~~~~~~~~ 204 (237)
++...+==++.++.+++++++++++.+.+|.++-++|+++..+.|.++++
T Consensus 265 ~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~~~~ 314 (316)
T KOG1441|consen 265 SVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLKEKK 314 (316)
T ss_pred hhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhhhhhc
Confidence 99999988999999999999999999999999999999998877665444
No 41
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=98.64 E-value=2.8e-07 Score=78.04 Aligned_cols=189 Identities=15% Similarity=0.085 Sum_probs=110.9
Q ss_pred ccceeeccCCCcchhhHHHhHHhHHHHHHhcCCCc---------cCCCCccccccccCcccCcchhhHHHHHHHHHHHHH
Q 026497 2 EKLKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPI---------VRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISA 72 (237)
Q Consensus 2 e~~~lrer~s~~~~~Gi~la~~Gv~ll~~~~g~~~---------~~~~~~~~~~~~~~~~~~~~~~G~ll~llaa~~~a~ 72 (237)
+....++|.++.|++++++...|++.-..++.+.. ...+. +...+. .....+...|...++.++.+=++
T Consensus 22 ~~~~~~~~~~~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~-~~~~~~-~~~~g~~~~g~~~~l~a~~~~~~ 99 (222)
T TIGR00803 22 NLLAAGKQVTQLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQM-VQSSAK-TLMFGNPVVGLSAVLSALLSSGF 99 (222)
T ss_pred cccccceeeehHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeec-CCCCcc-ccccccHHHHHHHHHHHHHHHhh
Confidence 45567899999999999999999875322111000 00000 000000 00112345677777777777777
Q ss_pred HHHHHHHHHhhcchHHHHHHHH-HHHHHHHHHHHHHHhcccc-ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 026497 73 WYILQAITLKEFPALIVMLCYQ-YFFSTILAAMFSLTVVTEL-SAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAG 150 (237)
Q Consensus 73 y~v~~~~~~~~~~~~~~~t~~~-~~~g~l~~~~~~~~~~~~~-~~~~~~~~~~~~~llylgi~~t~la~~l~~~~l~~~~ 150 (237)
-.+++++..|+.+..+-...++ .+++.+.........+... ..+... ..+-...+..++..+++..+..+.+|+.+
T Consensus 100 ~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~a~~~~~v~~vlk~~~ 177 (222)
T TIGR00803 100 AGVYFEKILKDGDTMFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFF--IGYPTAVWIVGLLNVGGGLCIGGVVRYAD 177 (222)
T ss_pred hHHHHHHcccCCCCchHHHHHHHHHHHHHHHHHHHhhcccchhhccCcc--cCCchHHHHHHHHHHhcCceeeehhHHhH
Confidence 7777777655542111111121 2222221111111111110 111100 00111112223456778888999999999
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhh
Q 026497 151 PLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYV 194 (237)
Q Consensus 151 a~~~s~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l 194 (237)
+...+....+.++++.+++++++||+++..+++|+.+++.|+++
T Consensus 178 ~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l 221 (222)
T TIGR00803 178 NTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL 221 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence 99999999999999999999999999999999999999999765
No 42
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=98.63 E-value=2.3e-07 Score=81.16 Aligned_cols=187 Identities=18% Similarity=0.227 Sum_probs=138.4
Q ss_pred CccceeeccCCCcchhhHHHhHHhHHHHHHhcCCCccCCCCccccccccCcccCcchhhHHHHHHHHHHHHHHHHHHHHH
Q 026497 1 MEKLKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAIT 80 (237)
Q Consensus 1 ~e~~~lrer~s~~~~~Gi~la~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~llaa~~~a~y~v~~~~~ 80 (237)
|.++..|+|++..+.+...+--.|+.+....+..+. + ...+..+..+|..++...-+.=++-+..+.++
T Consensus 126 mg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~s-----~------~~~g~~ns~~G~~Ll~~~L~fDgfTn~tQd~l 194 (327)
T KOG1581|consen 126 MGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSDS-----S------SKSGRENSPIGILLLFGYLLFDGFTNATQDSL 194 (327)
T ss_pred HHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCCC-----c------cccCCCCchHhHHHHHHHHHHHhhHHhHHHHH
Confidence 346778999999999988888888866543322110 0 01233456789999999999888888899999
Q ss_pred Hhhcc-hHHHHHHHHHHHHHHHHHHHHHHhcccc-c--cc-cccchhhHHHHHHHHHHHHHHHHHHHHHHHhccChhhhh
Q 026497 81 LKEFP-ALIVMLCYQYFFSTILAAMFSLTVVTEL-S--AW-KLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVS 155 (237)
Q Consensus 81 ~~~~~-~~~~~t~~~~~~g~l~~~~~~~~~~~~~-~--~~-~~~~~~~~~~llylgi~~t~la~~l~~~~l~~~~a~~~s 155 (237)
.+++. +++.++.+..+++++...... ...++. . .+ ..++ ..+.-++.+.. +.+++..+.++-+++.|+-.-+
T Consensus 195 f~~~k~s~~~mM~~vNLf~~i~~~~~l-i~qg~~~~av~F~~~hp-~~~~Di~l~s~-~gavGQ~FI~~TI~~FGslt~t 271 (327)
T KOG1581|consen 195 FKKYKVSSLHMMFGVNLFSAILNGTYL-ILQGHLLPAVSFIKEHP-DVAFDILLYST-CGAVGQLFIFYTIERFGSLTFT 271 (327)
T ss_pred hccCCccHhHHHHHHHHHHHHHHHHhh-hcCCCCchHHHHHHcCh-hHHHHHHHHHH-hhhhhhheehhhHhhcccHHHH
Confidence 88652 478888899999888777763 322211 1 11 1122 23443333344 5688888899999999999999
Q ss_pred hhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhccccc
Q 026497 156 MFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAK 201 (237)
Q Consensus 156 ~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~~~~~ 201 (237)
.++..-=+++++++.+.+|.++++.|++|..+++.|+++-..-+++
T Consensus 272 ~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~~k~~ 317 (327)
T KOG1581|consen 272 TIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEILLKKK 317 (327)
T ss_pred HHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999876655554
No 43
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=98.57 E-value=4.9e-06 Score=71.67 Aligned_cols=141 Identities=17% Similarity=0.292 Sum_probs=103.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHH
Q 026497 57 ILGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAA 136 (237)
Q Consensus 57 ~~G~ll~llaa~~~a~y~v~~~~~~~~~~~~~~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~llylgi~~t~ 136 (237)
..+....++.++.|+......+...+.............+.+.+...+.... +. ...+... ..+......+.+...
T Consensus 6 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~--~~~~~~~~~~~~~~~ 81 (292)
T COG0697 6 LLGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLL-EP-RGLRPAL--RPWLLLLLLALLGLA 81 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHh-hc-ccccccc--cchHHHHHHHHHHHH
Confidence 4678888888899999999888876652224555555666666553222211 11 0011111 113344556777889
Q ss_pred HHHHHHHHHHhccChhhhhhhhhhHHHHHHHHHH-HHhcCCcchhhHHHHHHHHHHHhhhhccccc
Q 026497 137 FLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGV-IIFGDGLFLGSLVGAVIIVIGFYVVMWGKAK 201 (237)
Q Consensus 137 la~~l~~~~l~~~~a~~~s~~~~l~Pv~a~ll~~-l~lgE~l~~~~~iG~~lIl~Gv~l~~~~~~~ 201 (237)
..+.+|+.++++.++..++...+..|++..++++ ++++|++++.++.|.++.+.|+.++.++...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~ 147 (292)
T COG0697 82 LPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGG 147 (292)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCc
Confidence 9999999999999999999999999999999997 6779999999999999999999988776543
No 44
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=98.47 E-value=5.2e-06 Score=72.44 Aligned_cols=139 Identities=14% Similarity=0.162 Sum_probs=107.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhcccccccc-ccchhhHHHHHHHHHHHH
Q 026497 57 ILGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWK-LRLDVGLFAIAYSAVIGA 135 (237)
Q Consensus 57 ~~G~ll~llaa~~~a~y~v~~~~~~~~~~~~~~~t~~~~~~g~l~~~~~~~~~~~~~~~~~-~~~~~~~~~llylgi~~t 135 (237)
..|.++.+.|-+.|+.--.+.|- .++.+ +.++.++-.+.+..++........+....++ ...+..+......++. -
T Consensus 6 ~~Gil~~l~Ay~lwG~lp~y~kl-l~~~~-~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~l-i 82 (293)
T COG2962 6 RKGILLALLAYLLWGLLPLYFKL-LEPLP-ATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALL-I 82 (293)
T ss_pred cchhHHHHHHHHHHHHHHHHHHH-HccCC-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHH-H
Confidence 35999999999999987777554 56665 7889889888888777666555443222222 1222345555555543 4
Q ss_pred HHHHHHHHHHHhccChhhhhhhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhcc
Q 026497 136 AFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWG 198 (237)
Q Consensus 136 ~la~~l~~~~l~~~~a~~~s~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~~ 198 (237)
..-+.+|.|+.++-....+|+=.++.|++.+++|.++++|+++..|+++.++-.+||....+.
T Consensus 83 ~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~ 145 (293)
T COG2962 83 GLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWL 145 (293)
T ss_pred HHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999999999999999999999999999999999876543
No 45
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=98.41 E-value=5.8e-06 Score=63.75 Aligned_cols=69 Identities=19% Similarity=0.321 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHHHhccChhhhhhhh-hhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhccc
Q 026497 131 AVIGAAFLTTLLLWCLMRAGPLYVSMFK-PLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGK 199 (237)
Q Consensus 131 gi~~t~la~~l~~~~l~~~~a~~~s~~~-~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~~~ 199 (237)
.+..-+++|+++..++++++.+.+-... -+--+..++.|++++||++++.+++|..+|+.|+.......
T Consensus 36 ~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~ 105 (120)
T PRK10452 36 MLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT 105 (120)
T ss_pred HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence 3456688999999999999988776664 57778889999999999999999999999999998875543
No 46
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.40 E-value=8.3e-06 Score=72.06 Aligned_cols=131 Identities=15% Similarity=0.153 Sum_probs=92.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHH
Q 026497 59 GGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFL 138 (237)
Q Consensus 59 G~ll~llaa~~~a~y~v~~~~~~~~~~~~~~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~llylgi~~t~la 138 (237)
|.++.++++++|+..-+..|++. ..+ +.+.. .+.+|++++..+......+. ... ...+....++-..=+++
T Consensus 2 ~~l~~lia~~~wGs~g~~~k~~~-g~~-~~~~~--~~~~g~l~~~~~~~~~~~~~--~~~---~~~~~~g~l~G~~w~ig 72 (290)
T TIGR00776 2 DILIALIPALFWGSFVLINVKIG-GGP-YSQTL--GTTFGALILSIAIAIFVLPE--FWA---LSIFLVGLLSGAFWALG 72 (290)
T ss_pred chHHHHHHHHHHhhhHHHHhccC-CCH-HHHHH--HHHHHHHHHHHHHHHHhCCc--ccc---cHHHHHHHHHHHHHHhh
Confidence 57889999999999988888764 333 33333 35566666655554433211 110 11111111111125677
Q ss_pred HHHHHHHHhccChhhhhhhhh-hHHHHHHHHHHHHhcCCcchhh----HHHHHHHHHHHhhhhcc
Q 026497 139 TTLLLWCLMRAGPLYVSMFKP-LAILFSTVMGVIIFGDGLFLGS----LVGAVIIVIGFYVVMWG 198 (237)
Q Consensus 139 ~~l~~~~l~~~~a~~~s~~~~-l~Pv~a~ll~~l~lgE~l~~~~----~iG~~lIl~Gv~l~~~~ 198 (237)
...|+.++++.|.+.+-.+.+ ++|++..+++.+++||+.+..+ ++|.++++.|+++....
T Consensus 73 ~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~ 137 (290)
T TIGR00776 73 QINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRS 137 (290)
T ss_pred hhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEec
Confidence 799999999999999988888 9999999999999999999999 99999999998886444
No 47
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=98.31 E-value=5.8e-06 Score=71.92 Aligned_cols=182 Identities=12% Similarity=0.127 Sum_probs=119.5
Q ss_pred ceeeccCCCcchhhHHHhHHhHHHHHHhcCCCccCCCCccccccccCcccCcchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 026497 4 LKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLKE 83 (237)
Q Consensus 4 ~~lrer~s~~~~~Gi~la~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~llaa~~~a~y~v~~~~~~~~ 83 (237)
-+++++++.++|+|++.-..|++.+-..+-... ++| ....++...||++++.+-+.-|...++-+|.+++
T Consensus 132 ~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~---~~p-------~~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~ 201 (372)
T KOG3912|consen 132 MFLNRTITGRQWLGILFVSLGLVIVGSLDVHLV---TDP-------YTDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKK 201 (372)
T ss_pred HHHhcccchhhHHHHHHHHhhhheeeeeecccc---cCC-------ccccccchhhhHHHHHHHHHHHHHHHHHHhhhhh
Confidence 368899999999999999999977631110000 000 0123456789999999999999999998888877
Q ss_pred cc-hHHHHHHHHHHHHHHHHHHHHHH----hccc-----ccc-ccccchhhHH-----HHHHHHHHHHHHHHHHHH----
Q 026497 84 FP-ALIVMLCYQYFFSTILAAMFSLT----VVTE-----LSA-WKLRLDVGLF-----AIAYSAVIGAAFLTTLLL---- 143 (237)
Q Consensus 84 ~~-~~~~~t~~~~~~g~l~~~~~~~~----~~~~-----~~~-~~~~~~~~~~-----~llylgi~~t~la~~l~~---- 143 (237)
++ +|+....|+.++|.+++..+... ..++ +.. |. .+...|. -.+++++.+..++-.++|
T Consensus 202 ~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~e-D~~~~~~~~~e~p~l~val~~~~vSiAffNfaGl 280 (372)
T KOG3912|consen 202 SNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVLE-DWGDAFAALQESPSLAVALIGFTVSIAFFNFAGL 280 (372)
T ss_pred ccCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcchh-hHHHHHHHhcCCchhHHHHhhhhhheeeeeehhh
Confidence 53 58999999999996655544432 1121 110 11 0000111 123334444444444443
Q ss_pred HHHhccChhhhhhhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhh
Q 026497 144 WCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVM 196 (237)
Q Consensus 144 ~~l~~~~a~~~s~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~ 196 (237)
..-|..++++-.+.-.+--.+--+++.....|.++..|+.|.++.+.|+++.+
T Consensus 281 sitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGFliLi~Gi~lY~ 333 (372)
T KOG3912|consen 281 SITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLILIMGIILYN 333 (372)
T ss_pred HHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33566677777777666666666677777789999999999999999998764
No 48
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=98.28 E-value=4.5e-05 Score=67.24 Aligned_cols=127 Identities=9% Similarity=0.005 Sum_probs=95.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHH
Q 026497 56 WILGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGA 135 (237)
Q Consensus 56 ~~~G~ll~llaa~~~a~y~v~~~~~~~~~~~~~~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~llylgi~~t 135 (237)
...|..++++++++|+......|...+..+ |..+.++.++++++++.++...... .+ ....+...+..|++ .
T Consensus 10 ~~~~~~~~~la~~~~~~~~~~~K~~~~~~~-~~~~~~~R~~~a~l~l~~~~~~~~~---~~---~~~~~~~~~~~g~~-~ 81 (293)
T PRK10532 10 VWLPILLLLIAMASIQSGASLAKSLFPLVG-APGVTALRLALGTLILIAIFKPWRL---RF---AKEQRLPLLFYGVS-L 81 (293)
T ss_pred cchHHHHHHHHHHHHHhhHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHhHHhc---cC---CHHHHHHHHHHHHH-H
Confidence 357899999999999999999898887775 8999999999999888765422111 11 11334445555654 5
Q ss_pred HHHHHHHHHHHhccChhhhhhhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhh
Q 026497 136 AFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVM 196 (237)
Q Consensus 136 ~la~~l~~~~l~~~~a~~~s~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~ 196 (237)
++.+.++++++++.+++.++...+..|++..+++. |++.. ..+.++.+.|+++..
T Consensus 82 ~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~~----~~~~~--~~~~~i~~~Gv~li~ 136 (293)
T PRK10532 82 GGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSS----RRPVD--FVWVVLAVLGLWFLL 136 (293)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhc----CChHH--HHHHHHHHHHHheee
Confidence 66778899999999999999999999999988873 65543 455666778887654
No 49
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.27 E-value=1.1e-05 Score=71.19 Aligned_cols=177 Identities=14% Similarity=0.162 Sum_probs=130.5
Q ss_pred ccceeeccCCCcchhhHHHhHHhHHHHHHhcCCCccCCCCccccccccCcccCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 026497 2 EKLKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITL 81 (237)
Q Consensus 2 e~~~lrer~s~~~~~Gi~la~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~llaa~~~a~y~v~~~~~~ 81 (237)
|.+++|.|+++.-+..+....+|...-... +. .-...|-.+++...++-+.+.+..|+..
T Consensus 121 E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~---d~-----------------sf~~~gY~w~~~n~~~~a~~~v~~kk~v 180 (314)
T KOG1444|consen 121 EVLFFGKRPSNKVWASVFAMIIGSVAAAFT---DL-----------------SFNLRGYSWALANCLTTAAFVVYVKKSV 180 (314)
T ss_pred HHhhcCcCchhhHHHHHHHHHHHHHhhccc---cc-----------------eecchhHHHHHHHHHHHHHHHHHHHHhh
Confidence 778999999999999999988888665421 11 1123489999999999999999999876
Q ss_pred hhcc-hHHHHHHHHHHHHHHHHHHHHHHhcccc------ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhccChhhh
Q 026497 82 KEFP-ALIVMLCYQYFFSTILAAMFSLTVVTEL------SAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYV 154 (237)
Q Consensus 82 ~~~~-~~~~~t~~~~~~g~l~~~~~~~~~~~~~------~~~~~~~~~~~~~llylgi~~t~la~~l~~~~l~~~~a~~~ 154 (237)
+... +.+.++.+..+++.+.+....+++++.. ..|. ....+..+...++++-++.|..+ +..+..+++..
T Consensus 181 d~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~--~~~~~~~~~lScv~gf~isy~s~-~ct~~~SAtT~ 257 (314)
T KOG1444|consen 181 DSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWS--DSSVLVVMLLSCVMGFGISYTSF-LCTRVNSATTT 257 (314)
T ss_pred ccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhccccc--chhHHHHHHHHHHHHHHHHHHHH-HHHhhccccce
Confidence 5421 2467788888888888888887766421 1121 11346778888888888877654 67778888888
Q ss_pred hhhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhccccc
Q 026497 155 SMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAK 201 (237)
Q Consensus 155 s~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~~~~~ 201 (237)
++.....=....+...++.|+++++..++|..+-++|=.+....+.+
T Consensus 258 tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~~~ 304 (314)
T KOG1444|consen 258 TIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYATFR 304 (314)
T ss_pred eehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhhhh
Confidence 88886666667777777778899999999999988776555555443
No 50
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=98.21 E-value=1.9e-05 Score=68.45 Aligned_cols=181 Identities=12% Similarity=0.130 Sum_probs=127.9
Q ss_pred cceeeccCCCcchhhHHHhHHhHHHHHHhcCCCccCCCCccccccccCcccCcchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 026497 3 KLKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLK 82 (237)
Q Consensus 3 ~~~lrer~s~~~~~Gi~la~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~llaa~~~a~y~v~~~~~~~ 82 (237)
.++-++|..........+-..|+++....+... +.+. ...|..++-.|-++=|+-..++++..+
T Consensus 151 ifIqGkRY~v~d~~aA~lm~lGli~FTLADs~~---------------sPNF-~~~Gv~mIsgALl~DA~iGNvQEk~m~ 214 (367)
T KOG1582|consen 151 IFIQGKRYGVHDYIAAMLMSLGLIWFTLADSQT---------------SPNF-NLIGVMMISGALLADAVIGNVQEKAMK 214 (367)
T ss_pred eeeccccccHHHHHHHHHHHHHHHhhhhccccc---------------CCCc-ceeeHHHHHHHHHHHHHhhHHHHHHHh
Confidence 345567888888888888889998876543221 1122 247888888888888887778888777
Q ss_pred hcch-HHHHHHHHHHHHHHHHHHHHHHhccccccccc---cchhhHHHHHHHHHHHHHHHHHHHHHHHhccChhhhhhhh
Q 026497 83 EFPA-LIVMLCYQYFFSTILAAMFSLTVVTELSAWKL---RLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFK 158 (237)
Q Consensus 83 ~~~~-~~~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~---~~~~~~~~llylgi~~t~la~~l~~~~l~~~~a~~~s~~~ 158 (237)
.++. .-++.+++..+|.+.++..-...++-+..|.. ++.......++. -..+-++...-...++..||..++..+
T Consensus 215 ~~~~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~tyGy~~~~-s~~gylG~~~VLalI~~fGA~~aatvT 293 (367)
T KOG1582|consen 215 MNPASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRTYGYAFLF-SLAGYLGIVFVLALIKLFGALIAATVT 293 (367)
T ss_pred hCCCCcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHhHHHHHHHH-HHHhHhhHHHHHHHHHHhchhHHHHHH
Confidence 6652 45677788888888777666655554444442 111111211111 123344444445667778999999999
Q ss_pred hhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhcccc
Q 026497 159 PLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKA 200 (237)
Q Consensus 159 ~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~~~~ 200 (237)
..---++.+++++++..++|.+..-|+.+|++|+++....++
T Consensus 294 TaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk~ 335 (367)
T KOG1582|consen 294 TARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSKR 335 (367)
T ss_pred HhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccCC
Confidence 999999999999999999999999999999999999887763
No 51
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=98.07 E-value=0.00013 Score=63.69 Aligned_cols=166 Identities=16% Similarity=0.176 Sum_probs=103.6
Q ss_pred ceeeccCCCcchh----hHHHhHHhHHHHHHhcCCCccCCCCccccccccCcccCcchhhHHHHHHHHHHHHHHHHHHHH
Q 026497 4 LKWRSKSSQAKSL----GTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAI 79 (237)
Q Consensus 4 ~~lrer~s~~~~~----Gi~la~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~llaa~~~a~y~v~~~~ 79 (237)
++++|..+..+++ ++++-++|+.+....+..+. ..++..+...|.+.++++.+.|..|....|-
T Consensus 92 ~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~~~~~------------~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~ 159 (269)
T PF06800_consen 92 LFFGEWTTTTQKIIGFLALVLIIIGVILTSYQDKKSD------------KSSSKSNMKKGILALLISTIGYWIYSVIPKA 159 (269)
T ss_pred hhcCCCCCcchHHHHHHHHHHHHHHHHHhcccccccc------------ccccccchhhHHHHHHHHHHHHHHHHHHHHh
Confidence 5677877766553 56666777765542211100 0112334567999999999999999999654
Q ss_pred HHhhcchHHHHHHHH---HHHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhccChhhhhh
Q 026497 80 TLKEFPALIVMLCYQ---YFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSM 156 (237)
Q Consensus 80 ~~~~~~~~~~~t~~~---~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~llylgi~~t~la~~l~~~~l~~~~a~~~s~ 156 (237)
. +. ++.....=| ++.+++++.... ..... .+ ..|-.++ .|+ .=.++-.++..+.++.|.+.+-.
T Consensus 160 ~--~~-~~~~~~lPqaiGm~i~a~i~~~~~---~~~~~-~k----~~~~nil-~G~-~w~ignl~~~is~~~~G~a~af~ 226 (269)
T PF06800_consen 160 F--HV-SGWSAFLPQAIGMLIGAFIFNLFS---KKPFF-EK----KSWKNIL-TGL-IWGIGNLFYLISAQKNGVATAFT 226 (269)
T ss_pred c--CC-ChhHhHHHHHHHHHHHHHHHhhcc---ccccc-cc----chHHhhH-HHH-HHHHHHHHHHHhHHhccchhhhh
Confidence 2 23 244443333 333333332222 21111 11 1222221 122 23567778899999999999999
Q ss_pred hhhhHHHHHHHHHHHHhcCCcchh----hHHHHHHHHHHHhh
Q 026497 157 FKPLAILFSTVMGVIIFGDGLFLG----SLVGAVIIVIGFYV 194 (237)
Q Consensus 157 ~~~l~Pv~a~ll~~l~lgE~l~~~----~~iG~~lIl~Gv~l 194 (237)
+.-+..+++.+.|.+++||+=+.. .++|.+||+.|..+
T Consensus 227 lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il 268 (269)
T PF06800_consen 227 LSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL 268 (269)
T ss_pred HHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence 999999999999999999998755 45688888887653
No 52
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.07 E-value=2.8e-06 Score=73.55 Aligned_cols=190 Identities=12% Similarity=0.039 Sum_probs=126.5
Q ss_pred cceeeccCCCcchhhHHHhHHhHHHHHHhcCCCccCCCCccccccccCcccCcchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 026497 3 KLKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLK 82 (237)
Q Consensus 3 ~~~lrer~s~~~~~Gi~la~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~llaa~~~a~y~v~~~~~~~ 82 (237)
.+++|+|-+.....+.++-+.|-.+ |.+.. +..+.-...|.++-.++.++-|+..++.||...
T Consensus 147 yvllkqkTs~~~~~~C~lIi~GF~l-----GvdqE------------~~~~~ls~~GvifGVlaSl~vAlnaiytkk~l~ 209 (347)
T KOG1442|consen 147 YVLLKQKTSFFALGCCLLIILGFGL-----GVDQE------------GSTGTLSWIGVIFGVLASLAVALNAIYTKKVLP 209 (347)
T ss_pred Hhhcccccccccceeehhheehhee-----ccccc------------cccCccchhhhHHHHHHHHHHHHHHHhhheecc
Confidence 5789999998888888777777533 11110 011222357999999999999999999887655
Q ss_pred hcc-hHHHHHHHHHHHHHHHHHHHHHHhcccccccc---ccchhhHHHHHHHHHHHHHHHHHHHHHHHhccChhhhhhhh
Q 026497 83 EFP-ALIVMLCYQYFFSTILAAMFSLTVVTELSAWK---LRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFK 158 (237)
Q Consensus 83 ~~~-~~~~~t~~~~~~g~l~~~~~~~~~~~~~~~~~---~~~~~~~~~llylgi~~t~la~~l~~~~l~~~~a~~~s~~~ 158 (237)
... .-+.++.+..+.+.++++|...+.++-...+. ......|..+...|+++-.++|... +=+|-.+|-+=.+..
T Consensus 210 ~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLsglfgF~mgyvTg-~QIK~TSplThnISg 288 (347)
T KOG1442|consen 210 PVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLSGLFGFAMGYVTG-WQIKVTSPLTHNISG 288 (347)
T ss_pred cccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHHHHHHHHhhheee-EEEEecccceeeecH
Confidence 432 25788999999999999888776543211111 1112357777777887777766532 223444443333333
Q ss_pred hhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhcccccccccccccC
Q 026497 159 PLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAKEENTIDDRG 210 (237)
Q Consensus 159 ~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~~~~~~~~~~~~~~ 210 (237)
.---..=.++++.+++|..+..-|-+-++|+.|-....+.|++|++++.++.
T Consensus 289 TAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk~~em~~~~~~~ 340 (347)
T KOG1442|consen 289 TAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVKEHEMRKASAQR 340 (347)
T ss_pred hHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHHHHHHHhhccCC
Confidence 3333444678889999999999999999999998887777776666554433
No 53
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=98.06 E-value=0.00012 Score=55.55 Aligned_cols=68 Identities=19% Similarity=0.191 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHhccChhhhhhh-hhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhccc
Q 026497 132 VIGAAFLTTLLLWCLMRAGPLYVSMF-KPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGK 199 (237)
Q Consensus 132 i~~t~la~~l~~~~l~~~~a~~~s~~-~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~~~ 199 (237)
+++-+++|.++..++++++.+.+-.. .-+--+..++.|++++||++++.+++|.++|+.|+...+...
T Consensus 37 ~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~ 105 (110)
T PRK09541 37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 44567788888888888888766544 446778889999999999999999999999999999876543
No 54
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=98.06 E-value=0.00016 Score=64.04 Aligned_cols=129 Identities=16% Similarity=0.155 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHhhc-ch--HHHHHHHHHHHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 026497 71 SAWYILQAITLKEF-PA--LIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLM 147 (237)
Q Consensus 71 a~y~v~~~~~~~~~-~~--~~~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~llylgi~~t~la~~l~~~~l~ 147 (237)
..|.++++++.++. .. +..+++.|+++.++...+.......+.. -. ..+...+..+ +...++-.+-+.+++
T Consensus 13 ~~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~-~~~~~~~~~~~~al~ 86 (303)
T PF08449_consen 13 CSYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKFPKS-RK----IPLKKYAILS-FLFFLASVLSNAALK 86 (303)
T ss_pred HHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhccccCC-Cc----ChHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 34556777776553 23 7889999999988877766554431111 01 1122222233 356777788999999
Q ss_pred ccChhhhhhhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhccccccccc
Q 026497 148 RAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAKEENT 205 (237)
Q Consensus 148 ~~~a~~~s~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~~~~~~~~~ 205 (237)
+++...-.++-...|+..++++++++|++.+..++++.+++.+|+.+....+..+.++
T Consensus 87 ~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~ 144 (303)
T PF08449_consen 87 YISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSS 144 (303)
T ss_pred hCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccccc
Confidence 9999999999999999999999999999999999999999999999887775544433
No 55
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=97.95 E-value=7.4e-05 Score=64.95 Aligned_cols=184 Identities=16% Similarity=0.213 Sum_probs=117.7
Q ss_pred ccceeeccCCCcchhhHHHhHHhHHHHHHhcCCCccCCCCccccccc--cCcccCcchhhHHHHHHHHHHHHHHHHHHHH
Q 026497 2 EKLKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQ--IQPLQSNWILGGFYLAAQAILISAWYILQAI 79 (237)
Q Consensus 2 e~~~lrer~s~~~~~Gi~la~~Gv~ll~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~G~ll~llaa~~~a~y~v~~~~ 79 (237)
.++.+++|.+.+|+..+++--+|+++-...+.++... .+...+. +..+..-|..|..+...+-+.-|...+++++
T Consensus 109 g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~---~~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~mgiyqE~ 185 (330)
T KOG1583|consen 109 GWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRS---KLSGLDSGSAQSDFFWWLIGIALLVFALLLSAYMGIYQET 185 (330)
T ss_pred HHHhccceeehhhhhhHHhhhhhheeEEeecCcchhh---hhcccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999999997765433222210 0111111 1122334678999988999999988888888
Q ss_pred HHhhcc-hHHHHHHHHHHHHHHHHHHHHHHhcccc-cccc--------------ccchhhHHHHHHHHHHHHHHHHHHH-
Q 026497 80 TLKEFP-ALIVMLCYQYFFSTILAAMFSLTVVTEL-SAWK--------------LRLDVGLFAIAYSAVIGAAFLTTLL- 142 (237)
Q Consensus 80 ~~~~~~-~~~~~t~~~~~~g~l~~~~~~~~~~~~~-~~~~--------------~~~~~~~~~llylgi~~t~la~~l~- 142 (237)
.-|++. ++-+..+|.-+.+-. .-++...+. .+|. ..-+..|..+++. ...-|.|-
T Consensus 186 ~Y~kyGKh~~EalFytH~LsLP----~Flf~~~div~~~~~~~~se~~~~p~~g~~vP~~~~yLl~n----~L~Qy~Cik 257 (330)
T KOG1583|consen 186 TYQKYGKHWKEALFYTHFLSLP----LFLFMGDDIVSHWRLAFKSESYLIPLLGFKVPSMWVYLLFN----VLTQYFCIK 257 (330)
T ss_pred HHHHhcCChHHHHHHHHHhccc----hHHHhcchHHHHHHHHhcCcceeccccCccccHHHHHHHHH----HHHHHHHHH
Confidence 877764 356777776655433 333322221 0111 1111234443332 22222222
Q ss_pred --HHHHhccChhhhhhhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhh
Q 026497 143 --LWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVM 196 (237)
Q Consensus 143 --~~~l~~~~a~~~s~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~ 196 (237)
+..-.+..+-++++..++--.++.+++++.+..++++++++|.+++..|-++..
T Consensus 258 gVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa 313 (330)
T KOG1583|consen 258 GVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFA 313 (330)
T ss_pred hhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHH
Confidence 233344556678888899999999999999999999999999999999977654
No 56
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=97.93 E-value=0.00013 Score=64.36 Aligned_cols=167 Identities=21% Similarity=0.214 Sum_probs=108.6
Q ss_pred ccCCCcchhhHHHhHHhHHHHHHhcCCCccCCCCccccccccCcccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcc--
Q 026497 8 SKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLKEFP-- 85 (237)
Q Consensus 8 er~s~~~~~Gi~la~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~llaa~~~a~y~v~~~~~~~~~~-- 85 (237)
||+++.-.+-+++-.+|+++++ +|..+ -...|..+++++.++-++-=.+.+.+.++.|
T Consensus 134 Ek~~w~L~l~v~lI~~Glflft-~KsTq-------------------f~i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~ 193 (349)
T KOG1443|consen 134 EKFRWALVLIVLLIAVGLFLFT-YKSTQ-------------------FNIEGFFLVLAASLLSGLRWAFTQMLLRNQPSA 193 (349)
T ss_pred HHHHHHHHHHHHHHhhheeEEE-ecccc-------------------eeehhHHHHHHHHHhhhhhHHHHHHHHhcCccc
Confidence 7888887777777778887765 44321 1246888888777765553334444444432
Q ss_pred --hHHHHHHHHHHHHHHHHHHHHHHhcccc-c----cccccc-hhhHHHHHHHHHHHHHHHHHHH---HHHHhccChhhh
Q 026497 86 --ALIVMLCYQYFFSTILAAMFSLTVVTEL-S----AWKLRL-DVGLFAIAYSAVIGAAFLTTLL---LWCLMRAGPLYV 154 (237)
Q Consensus 86 --~~~~~t~~~~~~g~l~~~~~~~~~~~~~-~----~~~~~~-~~~~~~llylgi~~t~la~~l~---~~~l~~~~a~~~ 154 (237)
+|+.......-.-.+.++|..+.+|+.. . .|.... ...+..+.++++ +..++|.+- +..+.+.+.-..
T Consensus 194 ~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~g~i~l-~g~laF~l~~sEflLl~~Ts~ltl 272 (349)
T KOG1443|consen 194 KRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRVIGLISL-GGLLAFLLEFSEFLLLSRTSSLTL 272 (349)
T ss_pred cCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHHHHHHHH-HHHHHHHHHHHHHheeeeccceee
Confidence 3555555444444566777777777642 1 122111 112334444433 344444443 456778888888
Q ss_pred hhhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhh
Q 026497 155 SMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVV 195 (237)
Q Consensus 155 s~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~ 195 (237)
+++.-.--+-..++|..+++|+++...++|..+.+.|+.+-
T Consensus 273 SIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~ 313 (349)
T KOG1443|consen 273 SIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH 313 (349)
T ss_pred eHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence 88888888999999999999999999999999999998764
No 57
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=97.87 E-value=0.00085 Score=52.99 Aligned_cols=131 Identities=12% Similarity=0.116 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHH
Q 026497 60 GFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLT 139 (237)
Q Consensus 60 ~ll~llaa~~~a~y~v~~~~~~~~~~~~~~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~llylgi~~t~la~ 139 (237)
.++.+++...-++...+..++.++..+|+.-+.+.+..|.+.+..+.++.++. .+....+.+|+..+ -|++ .++--
T Consensus 3 ~lla~~aG~~i~~q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~--~~~~~~~~p~w~~l-GG~l-G~~~V 78 (138)
T PF04657_consen 3 ILLALLAGALIALQAAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGRP--SLASLSSVPWWAYL-GGLL-GVFFV 78 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhccc--ccchhccCChHHhc-cHHH-HHHHH
Confidence 45667777888888888888877765589999999999999998888776653 12111112343322 3443 45556
Q ss_pred HHHHHHHhccChhhhhhhhhh-HHHHHHHHHHH----HhcCCcchhhHHHHHHHHHHHhh
Q 026497 140 TLLLWCLMRAGPLYVSMFKPL-AILFSTVMGVI----IFGDGLFLGSLVGAVIIVIGFYV 194 (237)
Q Consensus 140 ~l~~~~l~~~~a~~~s~~~~l-~Pv~a~ll~~l----~lgE~l~~~~~iG~~lIl~Gv~l 194 (237)
....+.++++|++.+...... |=+.+.+++.+ .-.+++++..++|.++++.|+++
T Consensus 79 ~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 79 LSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 677788899999977666554 77777888875 23568999999999999999864
No 58
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=97.81 E-value=9.8e-05 Score=62.50 Aligned_cols=136 Identities=14% Similarity=0.142 Sum_probs=101.9
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHHHHHHHHhcccc-cccccc-chhhHHHHHHHH
Q 026497 55 NWILGGFYLAAQAILISAWYILQAITLKEFP-ALIVMLCYQYFFSTILAAMFSLTVVTEL-SAWKLR-LDVGLFAIAYSA 131 (237)
Q Consensus 55 ~~~~G~ll~llaa~~~a~y~v~~~~~~~~~~-~~~~~t~~~~~~g~l~~~~~~~~~~~~~-~~~~~~-~~~~~~~llylg 131 (237)
..+.|-+++...+++-+.|.+..|+..+-.+ +...-++|..+.+-.++..+++++|... ...... ......++...|
T Consensus 152 ~lN~GY~Wm~~NclssaafVL~mrkri~ltNf~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISg 231 (309)
T COG5070 152 ILNPGYLWMFTNCLSSAAFVLIMRKRIKLTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISG 231 (309)
T ss_pred ccCCceEEEehhhHhHHHHHHHHHHhhcccccchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHH
Confidence 3467999999999999999999887654211 2467788999999888888888877532 111111 112344566666
Q ss_pred HHHHHHHHHHHHHHHhccChhhhhhhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHH
Q 026497 132 VIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIG 191 (237)
Q Consensus 132 i~~t~la~~l~~~~l~~~~a~~~s~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~G 191 (237)
+ ++..--++-.|.++-.+.+.-++...+.-.-..+.|.++++|+.+...+....+-...
T Consensus 232 l-~svgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGfls 290 (309)
T COG5070 232 L-CSVGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLS 290 (309)
T ss_pred H-HHhhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHH
Confidence 6 3444445667899999999999999999999999999999999999999988877644
No 59
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.78 E-value=0.00065 Score=51.20 Aligned_cols=66 Identities=15% Similarity=0.299 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHhccChhhh-hhhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhc
Q 026497 132 VIGAAFLTTLLLWCLMRAGPLYV-SMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMW 197 (237)
Q Consensus 132 i~~t~la~~l~~~~l~~~~a~~~-s~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~ 197 (237)
+.+-+++|++...++|++|.+.+ +++.-+--+..++.|++++||++++.+++|..+|+.|+...+.
T Consensus 36 i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l 102 (105)
T PRK11431 36 VTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKL 102 (105)
T ss_pred HHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Confidence 44567888888888888887755 4455567788899999999999999999999999999987643
No 60
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.78 E-value=0.00098 Score=50.54 Aligned_cols=65 Identities=15% Similarity=0.222 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHhccChhhhh-hhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhh
Q 026497 132 VIGAAFLTTLLLWCLMRAGPLYVS-MFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVM 196 (237)
Q Consensus 132 i~~t~la~~l~~~~l~~~~a~~~s-~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~ 196 (237)
+.+-+++|++...++|++|.+.+- ++.-+--+..++.+++++||++++.+++|.++|+.|+...+
T Consensus 42 ~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk 107 (109)
T PRK10650 42 LAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK 107 (109)
T ss_pred HHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 345678899999999999987654 44456667889999999999999999999999999998753
No 61
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=97.73 E-value=0.0011 Score=59.78 Aligned_cols=139 Identities=12% Similarity=0.107 Sum_probs=92.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHH
Q 026497 57 ILGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAA 136 (237)
Q Consensus 57 ~~G~ll~llaa~~~a~y~v~~~~~~~~~~~~~~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~llylgi~~t~ 136 (237)
..|-++.++-+..-.....+..+ +.+.|...+.+..+.-.++..+..+.-. ....|.......|+--+.+++ .=+
T Consensus 16 ~lgQ~lsl~~~~t~~~s~~l~~~---~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~-~~~~~~~~~~~~~w~y~lla~-~Dv 90 (334)
T PF06027_consen 16 LLGQVLSLCITGTGTFSSLLANK---GVNIPTFQSFFNYVLLALVYTPILLYRR-GFKKWLKVLKRPWWKYFLLAL-LDV 90 (334)
T ss_pred HHHHHHHHHHHhHHHHHHHHHhc---CccCcHHHHHHHHHHHHHHHhhhhhhcc-ccccchhhcchhHHHHHHHHH-HHH
Confidence 35666666655555555555443 2223555565655544444444332211 111121111223443333454 457
Q ss_pred HHHHHHHHHHhccChhhhhhhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhcccc
Q 026497 137 FLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKA 200 (237)
Q Consensus 137 la~~l~~~~l~~~~a~~~s~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~~~~ 200 (237)
.|-++++.+.++.+.+.+.++....-++.+++++++|+|++++.|++|.++.+.|+.++.....
T Consensus 91 ~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~ 154 (334)
T PF06027_consen 91 EANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDV 154 (334)
T ss_pred HHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecc
Confidence 8999999999999999999999999999999999999999999999999999999988766643
No 62
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=97.71 E-value=0.0003 Score=62.64 Aligned_cols=119 Identities=17% Similarity=0.247 Sum_probs=85.5
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHH
Q 026497 55 NWILGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIG 134 (237)
Q Consensus 55 ~~~~G~ll~llaa~~~a~y~v~~~~~~~~~~~~~~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~llylgi~~ 134 (237)
++..|.++.+.++++.+....++|+-.+|.++ -..-. +. ....+ +. . ..|+ .|+..
T Consensus 4 ~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~-~~~~~-----~~---~~~~~--------l~--~-~~W~----~G~~~ 59 (300)
T PF05653_consen 4 DFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPR-GSLRA-----GS---GGRSY--------LR--R-PLWW----IGLLL 59 (300)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-ccccc-----cc---hhhHH--------Hh--h-HHHH----HHHHH
Confidence 46789999999999999999999987665421 00000 00 00000 00 0 1122 23334
Q ss_pred HHHHHHHHHHHHhccChhhhhhhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhc
Q 026497 135 AAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMW 197 (237)
Q Consensus 135 t~la~~l~~~~l~~~~a~~~s~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~ 197 (237)
.+++..+.+.++...|++-++++..+.=++.++++..++||+++..+++|+++++.|..+...
T Consensus 60 ~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~ 122 (300)
T PF05653_consen 60 MVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVI 122 (300)
T ss_pred HhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEE
Confidence 455666777788888999999999999999999999999999999999999999999876543
No 63
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.68 E-value=0.00035 Score=52.54 Aligned_cols=66 Identities=24% Similarity=0.396 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHhccChhhh-hhhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhcc
Q 026497 133 IGAAFLTTLLLWCLMRAGPLYV-SMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWG 198 (237)
Q Consensus 133 ~~t~la~~l~~~~l~~~~a~~~-s~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~~ 198 (237)
++-.++|.+...++|+++...+ +++.-+--+..++.|++++||++++.+++|..+++.|+...+..
T Consensus 38 v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~ 104 (106)
T COG2076 38 VGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLG 104 (106)
T ss_pred HHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhc
Confidence 3457788888888888887654 45555666788999999999999999999999999999876654
No 64
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=97.58 E-value=0.00092 Score=49.11 Aligned_cols=57 Identities=26% Similarity=0.396 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHhccChhhh-hhhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHH
Q 026497 132 VIGAAFLTTLLLWCLMRAGPLYV-SMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVII 188 (237)
Q Consensus 132 i~~t~la~~l~~~~l~~~~a~~~-s~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lI 188 (237)
+.+-++++.++..++|+++.+.+ +++.-+-.+...+.|++++||++++.+++|..+|
T Consensus 36 ~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 36 VVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 34668889999999999999988 4456689999999999999999999999999886
No 65
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=97.41 E-value=0.00013 Score=64.94 Aligned_cols=69 Identities=28% Similarity=0.291 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHhccChhhhhhhhhhH-HHHHHHHHHHHhcCC--cch----hhHHHHHHHHHHHhhhhcccc
Q 026497 132 VIGAAFLTTLLLWCLMRAGPLYVSMFKPLA-ILFSTVMGVIIFGDG--LFL----GSLVGAVIIVIGFYVVMWGKA 200 (237)
Q Consensus 132 i~~t~la~~l~~~~l~~~~a~~~s~~~~l~-Pv~a~ll~~l~lgE~--l~~----~~~iG~~lIl~Gv~l~~~~~~ 200 (237)
+.+...-....|+++++.+++.+.+..+.. -.++++-|.++++|- .+. ....|..+++.|+++....|+
T Consensus 220 v~~~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~GV~lL~~~~~ 295 (300)
T PF05653_consen 220 VVTAVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIIIGVFLLSSSKD 295 (300)
T ss_pred HHHHHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhheeeccCc
Confidence 445566666678999999999887776664 456677778888884 455 345678888899988655433
No 66
>PRK13499 rhamnose-proton symporter; Provisional
Probab=97.30 E-value=0.0048 Score=55.88 Aligned_cols=136 Identities=13% Similarity=0.087 Sum_probs=86.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH-----HHhccccc-cccccchhhHHHHHH
Q 026497 56 WILGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFS-----LTVVTELS-AWKLRLDVGLFAIAY 129 (237)
Q Consensus 56 ~~~G~ll~llaa~~~a~y~v~~~~~~~~~~~~~~~t~~~~~~g~l~~~~~~-----~~~~~~~~-~~~~~~~~~~~~lly 129 (237)
...|.++.+++++||+.+.+-+|| .|+.+ ++.. |- . +.++..++. .+..++.. .....+...+..-+.
T Consensus 5 ~~~G~~~~~i~~~~~GS~~~p~K~-~k~w~--wE~~-W~-v-~gi~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l 78 (345)
T PRK13499 5 IILGIIWHLIGGASSGSFYAPFKK-VKKWS--WETM-WS-V-GGIFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVFL 78 (345)
T ss_pred hHHHHHHHHHHHHHhhcccccccc-cCCCc--hhHH-HH-H-HHHHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHH
Confidence 468999999999999999998888 45543 4443 43 1 222221111 11112111 111111122322222
Q ss_pred HHHHHHHHHHHHHHHHHhccChhhhhhh-hhhHHHHHHHHHHHHhcCCc-------chhhHHHHHHHHHHHhhhhcc
Q 026497 130 SAVIGAAFLTTLLLWCLMRAGPLYVSMF-KPLAILFSTVMGVIIFGDGL-------FLGSLVGAVIIVIGFYVVMWG 198 (237)
Q Consensus 130 lgi~~t~la~~l~~~~l~~~~a~~~s~~-~~l~Pv~a~ll~~l~lgE~l-------~~~~~iG~~lIl~Gv~l~~~~ 198 (237)
.|+ .=.++...+..+++++|.+++-.+ +-++-+.+++++.+++||=- ....++|.+++++|+.+..+.
T Consensus 79 ~G~-~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~A 154 (345)
T PRK13499 79 FGA-LWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRA 154 (345)
T ss_pred HHH-HHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHh
Confidence 233 357889999999999999976655 45688999999999999732 234678999999999998774
No 67
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=97.29 E-value=0.00026 Score=61.43 Aligned_cols=136 Identities=8% Similarity=0.117 Sum_probs=88.3
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhhHHHH-HHHHHH
Q 026497 55 NWILGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAI-AYSAVI 133 (237)
Q Consensus 55 ~~~~G~ll~llaa~~~a~y~v~~~~~~~~~~~~~~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l-lylgi~ 133 (237)
..++|.++.-++ ..+....+..++...+. |....-..+++--++..|..+.. .++. |.......|+.+ -++|.
T Consensus 35 ~p~~gl~l~~vs-~ff~~~~vv~t~~~e~~--p~e~a~~r~l~~mlit~pcliy~-~~~v-~gp~g~R~~LiLRg~mG~- 108 (346)
T KOG4510|consen 35 KPNLGLLLLTVS-YFFNSCMVVSTKVLEND--PMELASFRLLVRMLITYPCLIYY-MQPV-IGPEGKRKWLILRGFMGF- 108 (346)
T ss_pred CCccCceehhhH-HHHhhHHHhhhhhhccC--hhHhhhhhhhhehhhhheEEEEE-eeee-ecCCCcEEEEEeehhhhh-
Confidence 456788888888 66666777777776653 44444343333222222221111 1110 100011112211 22232
Q ss_pred HHHHHHHHHHHHHhccChhhhhhhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhccc
Q 026497 134 GAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGK 199 (237)
Q Consensus 134 ~t~la~~l~~~~l~~~~a~~~s~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~~~ 199 (237)
.+..+.++++++++-+.+.++++..|+++.+++|++|+|+.+....+|..+.+.|+.+..+..
T Consensus 109 ---tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPp 171 (346)
T KOG4510|consen 109 ---TGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPP 171 (346)
T ss_pred ---hHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCC
Confidence 334556788999999999999999999999999999999999999999999999999877764
No 68
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=97.08 E-value=0.0071 Score=52.91 Aligned_cols=106 Identities=14% Similarity=0.205 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhccChhhhhhhhh-hHHHHHHHHHHHH
Q 026497 94 QYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKP-LAILFSTVMGVII 172 (237)
Q Consensus 94 ~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~llylgi~~t~la~~l~~~~l~~~~a~~~s~~~~-l~Pv~a~ll~~l~ 172 (237)
-+.+|++++.....+..++ .++.. ...++.-+..|+ .=.++...++++.+++|.+++-+... ++=+.+.++|+++
T Consensus 18 G~t~Gali~alv~~~~~~p--~~~~~-~~~~~~~~lsG~-~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~ 93 (269)
T PF06800_consen 18 GTTIGALIFALVVFLFRQP--AFSMS-GTSFIVAFLSGA-FWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLF 93 (269)
T ss_pred HHHHHHHHHHHHHHHHhCC--CcchH-HHHHHHHHHHHH-HHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhh
Confidence 3445565555555444332 12110 112322223333 45788899999999999999998885 4566689999999
Q ss_pred hcCCcchhh----HHHHHHHHHHHhhhhccccccc
Q 026497 173 FGDGLFLGS----LVGAVIIVIGFYVVMWGKAKEE 203 (237)
Q Consensus 173 lgE~l~~~~----~iG~~lIl~Gv~l~~~~~~~~~ 203 (237)
+||--+..+ +++.++|+.|+++..++++++.
T Consensus 94 fgEW~~~~~~~~G~~Al~liiiGv~lts~~~~~~~ 128 (269)
T PF06800_consen 94 FGEWTTTTQKIIGFLALVLIIIGVILTSYQDKKSD 128 (269)
T ss_pred cCCCCCcchHHHHHHHHHHHHHHHHHhcccccccc
Confidence 999665444 4477889999998877755444
No 69
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.06 E-value=0.028 Score=44.93 Aligned_cols=139 Identities=11% Similarity=0.125 Sum_probs=90.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHH
Q 026497 58 LGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAF 137 (237)
Q Consensus 58 ~G~ll~llaa~~~a~y~v~~~~~~~~~~~~~~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~llylgi~~t~l 137 (237)
+..++.+++..+-....-...|+.+...+|+.-..+.+..|++.+..+.++.++.+. +....+.+|+... -|+++..
T Consensus 5 l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~~~~~-~a~~~~~pwW~~~-GG~lGa~- 81 (150)
T COG3238 5 LYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIKQGHPG-LAAVASAPWWAWI-GGLLGAI- 81 (150)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhcCCCc-hhhccCCchHHHH-ccchhhh-
Confidence 456667777777777777878877766568888999999999999988887554321 2111112233221 1222211
Q ss_pred HHHHHHHHHhccChh-hhhhhhhhHHHHHHHHHHHHhc----CCcchhhHHHHHHHHHHHhhhhccc
Q 026497 138 LTTLLLWCLMRAGPL-YVSMFKPLAILFSTVMGVIIFG----DGLFLGSLVGAVIIVIGFYVVMWGK 199 (237)
Q Consensus 138 a~~l~~~~l~~~~a~-~~s~~~~l~Pv~a~ll~~l~lg----E~l~~~~~iG~~lIl~Gv~l~~~~~ 199 (237)
--+.=.....++|++ .+.....-|-+.+++++.+=+. .++++..++|.++++.|+++..+++
T Consensus 82 ~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~~~ 148 (150)
T COG3238 82 FVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARRFG 148 (150)
T ss_pred hhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhcccc
Confidence 112224567788876 4455555677888888876654 5789999999999999976654443
No 70
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=96.84 E-value=0.0039 Score=53.84 Aligned_cols=66 Identities=17% Similarity=0.285 Sum_probs=59.0
Q ss_pred HHHHHHHHHHhccChhhhhhhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhcccccc
Q 026497 137 FLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAKE 202 (237)
Q Consensus 137 la~~l~~~~l~~~~a~~~s~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~~~~~~ 202 (237)
+.-.+.+.++++++|+.--+...+..++++++++++|+.+++..||++..+...|+.++.......
T Consensus 29 ~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~ 94 (244)
T PF04142_consen 29 IQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQS 94 (244)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCccc
Confidence 445667789999999999999999999999999999999999999999999999999887765543
No 71
>PRK13499 rhamnose-proton symporter; Provisional
Probab=96.68 E-value=0.28 Score=44.58 Aligned_cols=178 Identities=13% Similarity=0.123 Sum_probs=94.9
Q ss_pred CcchhhHHHhHHhHHHHHHhcCCCccCCCCccccccccCcccCcchhhHHHHHHHHHHHHHHH-------HHHHHHH-hh
Q 026497 12 QAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWY-------ILQAITL-KE 83 (237)
Q Consensus 12 ~~~~~Gi~la~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~llaa~~~a~y~-------v~~~~~~-~~ 83 (237)
..-.+|+++.++|+++.... |.... ...+++...+.+...|.++.+++.+.+++|. ...+... ..
T Consensus 135 ~~~~~gv~liliGi~l~s~A-g~~k~------~~~~~~~~~~~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g 207 (345)
T PRK13499 135 RMTLLGVLVALIGVAIVGRA-GQLKE------RKMGIKKAEEFNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALG 207 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHh-hhhcc------cccccccccccchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcC
Confidence 34567999999999887531 11000 0000000123456789999999999999999 4322211 11
Q ss_pred cchHHHHHHH---HHHHHHHHHHH-HHHH---hccccccc-cccc-hhh-HHHHHHHHH--HHHHHHHHHHHHHHhccCh
Q 026497 84 FPALIVMLCY---QYFFSTILAAM-FSLT---VVTELSAW-KLRL-DVG-LFAIAYSAV--IGAAFLTTLLLWCLMRAGP 151 (237)
Q Consensus 84 ~~~~~~~t~~---~~~~g~l~~~~-~~~~---~~~~~~~~-~~~~-~~~-~~~llylgi--~~t~la~~l~~~~l~~~~a 151 (237)
.+ +.....- .++.|+.+..+ +..+ -.++.... .... ... +-..++..+ +.=.+++..|..+-++.|.
T Consensus 208 ~~-~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~~~~~~~~~~~~~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~ 286 (345)
T PRK13499 208 VD-PLYAALPSYVVIMGGGAITNLGFCFIRLAKNKDLSLKADFSLAKPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGA 286 (345)
T ss_pred CC-chHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 22 2222222 22355544433 2221 11111101 1111 011 122222111 1234556677777778766
Q ss_pred hhhhh---hh-hhHHHHHHHHHHHHhcCCcc------hhhHHHHHHHHHHHhhhhcc
Q 026497 152 LYVSM---FK-PLAILFSTVMGVIIFGDGLF------LGSLVGAVIIVIGFYVVMWG 198 (237)
Q Consensus 152 ~~~s~---~~-~l~Pv~a~ll~~l~lgE~l~------~~~~iG~~lIl~Gv~l~~~~ 198 (237)
..... +. -+.-+++.+.|. ++||.=+ ...++|.++++.|..+...+
T Consensus 287 ~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~l~~G~vliI~g~~lig~~ 342 (345)
T PRK13499 287 QYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASRRPVRVLSLGCVVIILAANIVGLG 342 (345)
T ss_pred ccchHHHHHhccHHHHHHHHhhh-hhhhccCCCccchhHHHHHHHHHHHHHHHHhhc
Confidence 54443 33 455589999998 5999877 66789999999998876654
No 72
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=96.16 E-value=0.0057 Score=54.77 Aligned_cols=120 Identities=16% Similarity=0.175 Sum_probs=86.0
Q ss_pred HHHHHHHHHh--hcchHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 026497 73 WYILQAITLK--EFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAG 150 (237)
Q Consensus 73 y~v~~~~~~~--~~~~~~~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~llylgi~~t~la~~l~~~~l~~~~ 150 (237)
++++.|+.++ .++-|.+++..+...+.+.......+-..+... ......+..++-+|+ .-.++.++=+.++++.+
T Consensus 32 ~~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~--~~~~~~~~~llpl~~-~~~~~~v~~n~Sl~~v~ 108 (316)
T KOG1441|consen 32 VIILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPSK--ISSKLPLRTLLPLGL-VFCISHVLGNVSLSYVP 108 (316)
T ss_pred eEEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCc--cccccchHHHHHHHH-HHHHHHHhcchhhhccc
Confidence 4445677777 455578888887777777766665443322211 112234666777776 46788899999999999
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhh
Q 026497 151 PLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVV 195 (237)
Q Consensus 151 a~~~s~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~ 195 (237)
.+.+=..-.++|++.+++++++.+|+.+.....-.+.|+.|+.+.
T Consensus 109 VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ia 153 (316)
T KOG1441|consen 109 VSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIA 153 (316)
T ss_pred hhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEe
Confidence 999999999999999999999999999886555555555555443
No 73
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=95.67 E-value=0.034 Score=46.56 Aligned_cols=175 Identities=15% Similarity=0.199 Sum_probs=97.8
Q ss_pred cceeeccCCCcchhhHHHhHHhHHHHHHhcCCCccCCCCccccccccCcccCcchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 026497 3 KLKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLK 82 (237)
Q Consensus 3 ~~~lrer~s~~~~~Gi~la~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~llaa~~~a~y~v~~~~~~~ 82 (237)
...+++|+...|++..++++.|++++...++ ...+...|..+...++..-|+|-++-|+...
T Consensus 98 ~IVL~D~~~~~kIlaailAI~GiVmiay~DN------------------~~a~e~iGi~~AV~SA~~aAlYKV~FK~~iG 159 (290)
T KOG4314|consen 98 IIVLGDRFMGFKILAAILAIGGIVMIAYADN------------------EHADEIIGIACAVGSAFMAALYKVLFKMFIG 159 (290)
T ss_pred HHHhccchhhhhHHHHHHHhCcEEEEEeccc------------------hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3568999999999999999999987752111 1223468999999999999999999998876
Q ss_pred hcc--hH-HHHHHHHHH---HHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhccChhhhhh
Q 026497 83 EFP--AL-IVMLCYQYF---FSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSM 156 (237)
Q Consensus 83 ~~~--~~-~~~t~~~~~---~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~llylgi~~t~la~~l~~~~l~~~~a~~~s~ 156 (237)
+.+ +. .-+....++ +-....++++ +.+ ...|+.-...+|..+.-.+.+..++ -++.+.++..+.|-..|+
T Consensus 160 nAn~Gdaa~FmS~LGF~NL~~~~~~~lIL~-~T~--VE~~qsFA~~PWG~l~G~A~L~lAF-N~~iN~GiaL~~PilISi 235 (290)
T KOG4314|consen 160 NANFGDAAHFMSCLGFFNLCFISFPALILA-FTG--VEHLQSFAAAPWGCLCGAAGLSLAF-NFLINFGIALLNPILISI 235 (290)
T ss_pred cCcchhHHHHHHHHHHHHHHHHhhhHHHHH-Hhc--hHHHHHHhhCCchhhhhHHHHHHHH-hhheeehhhhhchhhhee
Confidence 542 11 111111111 1111111111 111 1122200012244333222222111 233455666666655555
Q ss_pred hhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhccc
Q 026497 157 FKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGK 199 (237)
Q Consensus 157 ~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~~~ 199 (237)
-+..--.--.....++=+-.++-....|..+|..|.++...+.
T Consensus 236 G~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLiiiP~ 278 (290)
T KOG4314|consen 236 GMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILIIIPE 278 (290)
T ss_pred hheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHheeccc
Confidence 4444333334455544444567778889999999988766653
No 74
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=95.65 E-value=0.0078 Score=51.81 Aligned_cols=133 Identities=11% Similarity=0.046 Sum_probs=85.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHH
Q 026497 59 GGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFL 138 (237)
Q Consensus 59 G~ll~llaa~~~a~y~v~~~~~~~~~~~~~~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~llylgi~~t~la 138 (237)
..++.++-++.|...-+...|.-. +|.+-+ .-+.+|++.+.+..+++-.+...+ ..++.-+..|. -=.++
T Consensus 3 ~~liaL~P~l~WGsip~v~~k~GG---~p~qQ~-lGtT~GALifaiiv~~~~~p~~T~-----~~~iv~~isG~-~Ws~G 72 (288)
T COG4975 3 DLLIALLPALGWGSIPLVANKFGG---KPYQQT-LGTTLGALIFAIIVFLFVSPELTL-----TIFIVGFISGA-FWSFG 72 (288)
T ss_pred hHHHHHHHHHHhcccceeeeecCC---ChhHhh-hhccHHHHHHHHHHheeecCccch-----hhHHHHHHhhh-Hhhhh
Confidence 456778888999876666444322 244433 445567776666555442221111 11221111222 23567
Q ss_pred HHHHHHHHhccChhhhhhhhh-hHHHHHHHHHHHHhcCCcchhhH----HHHHHHHHHHhhhhccccc
Q 026497 139 TTLLLWCLMRAGPLYVSMFKP-LAILFSTVMGVIIFGDGLFLGSL----VGAVIIVIGFYVVMWGKAK 201 (237)
Q Consensus 139 ~~l~~~~l~~~~a~~~s~~~~-l~Pv~a~ll~~l~lgE~l~~~~~----iG~~lIl~Gv~l~~~~~~~ 201 (237)
...++++++..|.+++.+..+ ++-|-+.++|++.+||=-+..++ ++.++++.|+++..+++|.
T Consensus 73 Q~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~ 140 (288)
T COG4975 73 QANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRN 140 (288)
T ss_pred hhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeeccc
Confidence 788999999999999998776 47788899999999997776654 3567888999987666543
No 75
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=95.17 E-value=0.17 Score=44.05 Aligned_cols=25 Identities=12% Similarity=0.231 Sum_probs=18.9
Q ss_pred chhhHHHHHHHHHHHhhhhcccccc
Q 026497 178 FLGSLVGAVIIVIGFYVVMWGKAKE 202 (237)
Q Consensus 178 ~~~~~iG~~lIl~Gv~l~~~~~~~~ 202 (237)
.+...+|.+++++|..+...-|..+
T Consensus 115 ~~Ln~~G~~l~~~~~~~f~fik~~~ 139 (254)
T PF07857_consen 115 PWLNYIGVALVLVSGIIFSFIKSEE 139 (254)
T ss_pred hHHHHHHHHHHHHHHHheeeecCCC
Confidence 5778999999999987766555444
No 76
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=94.88 E-value=0.1 Score=39.81 Aligned_cols=59 Identities=17% Similarity=0.216 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHhccChhhhhhhh-hhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhh
Q 026497 136 AFLTTLLLWCLMRAGPLYVSMFK-PLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYV 194 (237)
Q Consensus 136 ~la~~l~~~~l~~~~a~~~s~~~-~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l 194 (237)
..+-.+|++.+++.+-+.+.+.. .+.=+++++.++++.+|..+...++|+++|+.|+.+
T Consensus 52 q~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~L 111 (113)
T PF10639_consen 52 QSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVAL 111 (113)
T ss_pred HHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeee
Confidence 34456788889999999888885 778889999998777777788899999999999865
No 77
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=94.58 E-value=0.04 Score=46.13 Aligned_cols=63 Identities=16% Similarity=0.290 Sum_probs=57.1
Q ss_pred HHHHHHHHHhccChhhhhhhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhcccc
Q 026497 138 LTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKA 200 (237)
Q Consensus 138 a~~l~~~~l~~~~a~~~s~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~~~~ 200 (237)
+-+.|..++++++|+.++....-.--|..+++|+++|+++....++..++-+.|+.+..+..+
T Consensus 66 aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN 128 (290)
T KOG4314|consen 66 ANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADN 128 (290)
T ss_pred CCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccc
Confidence 467788999999999999999999999999999999999999999999999999887665543
No 78
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.09 E-value=0.02 Score=51.03 Aligned_cols=122 Identities=16% Similarity=0.170 Sum_probs=82.7
Q ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhhHHHHHHHHH
Q 026497 53 QSNWILGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAV 132 (237)
Q Consensus 53 ~~~~~~G~ll~llaa~~~a~y~v~~~~~~~~~~~~~~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~llylgi 132 (237)
+.++..|.++.+.+.+..+...++.||-.+|.. . ...+ . +++....... ..|+ .|+
T Consensus 16 ~~d~~~G~~LaissS~~Ig~sfilkKkgl~r~~-~---~~~r-------------a-~~gg~~yl~~--~~Ww----~G~ 71 (335)
T KOG2922|consen 16 SSDNIIGLVLAISSSIFIGSSFILKKKGLKRAG-A---SGLR-------------A-GEGGYGYLKE--PLWW----AGM 71 (335)
T ss_pred ccCceeeeeehhhccEEEeeehhhhHHHHHHHh-h---hccc-------------c-cCCCcchhhh--HHHH----HHH
Confidence 345678999999999999998888777665531 1 0000 0 0111111110 1132 344
Q ss_pred HHHHHHHHHHHHHHhccChhhhhhhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhcc
Q 026497 133 IGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWG 198 (237)
Q Consensus 133 ~~t~la~~l~~~~l~~~~a~~~s~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~~ 198 (237)
+..+++-..=+.+-...|++.++.+..+.-++.++++..+++|++++...+|+++.++|-.+....
T Consensus 72 ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~h 137 (335)
T KOG2922|consen 72 LTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIH 137 (335)
T ss_pred HHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEe
Confidence 455555555555556678899999999999999999999999999999999999999996544333
No 79
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=93.49 E-value=1.7 Score=32.68 Aligned_cols=38 Identities=18% Similarity=0.287 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhcccc
Q 026497 163 LFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKA 200 (237)
Q Consensus 163 v~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~~~~ 200 (237)
+.+.++++.+-|++++...++|..+.+.|+.+..+.+|
T Consensus 69 ~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~PR 106 (107)
T PF02694_consen 69 VASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFAPR 106 (107)
T ss_pred HHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEecCC
Confidence 77889999999999999999999999999988877654
No 80
>PRK02237 hypothetical protein; Provisional
Probab=93.11 E-value=2.9 Score=31.52 Aligned_cols=38 Identities=21% Similarity=0.175 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhcccc
Q 026497 163 LFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKA 200 (237)
Q Consensus 163 v~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~~~~ 200 (237)
+.+.+++|.+-|++++...++|.++.+.|+.+..+.+|
T Consensus 71 ~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~pR 108 (109)
T PRK02237 71 AGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYAPR 108 (109)
T ss_pred HHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheecCC
Confidence 67789999999999999999999999999988776654
No 81
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=92.61 E-value=0.12 Score=47.12 Aligned_cols=66 Identities=14% Similarity=0.193 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHhccChhhhhhhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhccccc
Q 026497 136 AFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAK 201 (237)
Q Consensus 136 ~la~~l~~~~l~~~~a~~~s~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~~~~~ 201 (237)
.+|-+.++.++++...+...+....--+|+.++|.++.+|++++...++.++-+.|++++..++.+
T Consensus 170 F~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~ 235 (416)
T KOG2765|consen 170 FLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSK 235 (416)
T ss_pred HHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEecccc
Confidence 467778899999999999999999999999999999999999999999999999999998777543
No 82
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=92.24 E-value=3.3 Score=37.53 Aligned_cols=139 Identities=17% Similarity=0.126 Sum_probs=80.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHH-hc-cccc-cccccchhhHHHHHHHHH
Q 026497 56 WILGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLT-VV-TELS-AWKLRLDVGLFAIAYSAV 132 (237)
Q Consensus 56 ~~~G~ll~llaa~~~a~y~v~~~~~~~~~~~~~~~t~~~~~~g~l~~~~~~~~-~~-~~~~-~~~~~~~~~~~~llylgi 132 (237)
...|.++..+++++-+.+.+=.||. |+.+ --..-..+.+++-+ ..|.... .. ++.. .....+...+....+.|+
T Consensus 5 ii~Gii~h~iGg~~~~sfy~P~kkv-k~Ws-WEs~Wlv~gi~swl-i~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~G~ 81 (344)
T PF06379_consen 5 IILGIIFHAIGGFASGSFYVPFKKV-KGWS-WESYWLVQGIFSWL-IVPWLWALLAIPDFFSIYSATPASTLFWTFLFGV 81 (344)
T ss_pred HHHHHHHHHHHHHHhhhhccchhhc-CCcc-HHHHHHHHHHHHHH-HHHHHHHHHhCCcHHHHHHhCChhHHHHHHHHHH
Confidence 4689999999999999888877775 4443 22222234444433 3333221 11 2211 111111122333333333
Q ss_pred HHHHHHHHHHHHHHhccChhh-hhhhhhhHHHHHHHHHHHHhcC-------CcchhhHHHHHHHHHHHhhhhcc
Q 026497 133 IGAAFLTTLLLWCLMRAGPLY-VSMFKPLAILFSTVMGVIIFGD-------GLFLGSLVGAVIIVIGFYVVMWG 198 (237)
Q Consensus 133 ~~t~la~~l~~~~l~~~~a~~-~s~~~~l~Pv~a~ll~~l~lgE-------~l~~~~~iG~~lIl~Gv~l~~~~ 198 (237)
+ =+++=..|-.+++++|-+. .++..-+.-+++.++--++.|+ +-....++|.++.++|+.+.-+.
T Consensus 82 l-WGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~A 154 (344)
T PF06379_consen 82 L-WGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKA 154 (344)
T ss_pred H-HhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHH
Confidence 2 3566778889999999773 4455555666666665555443 22456788999999999887655
No 83
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=92.02 E-value=0.48 Score=42.83 Aligned_cols=59 Identities=19% Similarity=0.183 Sum_probs=54.4
Q ss_pred HHHHHHHhccChhhhhhhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhcc
Q 026497 140 TLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWG 198 (237)
Q Consensus 140 ~l~~~~l~~~~a~~~s~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~~ 198 (237)
.+++.++.+++|+.-.+...+--+.++++.+++|+++++..||...++...|+.+++..
T Consensus 107 nl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~ 165 (345)
T KOG2234|consen 107 NLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLP 165 (345)
T ss_pred hHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhcc
Confidence 46678889999999999999999999999999999999999999999999999988744
No 84
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=91.08 E-value=0.67 Score=40.00 Aligned_cols=128 Identities=13% Similarity=0.078 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHhh-cc----------hHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHH
Q 026497 68 ILISAWYILQAITLKE-FP----------ALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAA 136 (237)
Q Consensus 68 ~~~a~y~v~~~~~~~~-~~----------~~~~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~llylgi~~t~ 136 (237)
+||-.|.+.+.|+.|. |. -.+++.+.||..-.++.=++..+....- .+.. ..|...... ..-.
T Consensus 23 vCYF~yGI~QEkitrGkYg~~g~~~E~FTfalaLVf~qC~~N~vfAkvl~~ir~~~~--~D~t--~~~~YaAcs--~sYL 96 (337)
T KOG1580|consen 23 VCYFVYGIQQEKITRGKYGLPGESIEKFTFALALVFFQCTANTVFAKVLFLIRKKTE--IDNT--PTKMYAACS--ASYL 96 (337)
T ss_pred heehhhhhHHHHhhccccCCCCcchheehHHHHHHHHHHHHHHHHHHhheeeccccc--ccCC--cchHHHHHH--HHHH
Confidence 7899999999998764 32 1466777788777765544333222110 1111 122221111 1223
Q ss_pred HHHHHHHHHHhccChhhhhhhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhccccc
Q 026497 137 FLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAK 201 (237)
Q Consensus 137 la~~l~~~~l~~~~a~~~s~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~~~~~ 201 (237)
+|..--|.+++..+--..-+--.--|+=.+++|+++.+.+-+|....-..+|++|+.+..+++++
T Consensus 97 lAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~K 161 (337)
T KOG1580|consen 97 LAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENK 161 (337)
T ss_pred HHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhccccc
Confidence 44555677888877555555566778888999999999999999999999999999998877543
No 85
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=90.04 E-value=0.34 Score=36.28 Aligned_cols=30 Identities=20% Similarity=0.289 Sum_probs=26.5
Q ss_pred HHHHHHHhcCCcchhhHHHHHHHHHHHhhh
Q 026497 166 TVMGVIIFGDGLFLGSLVGAVIIVIGFYVV 195 (237)
Q Consensus 166 ~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~ 195 (237)
+.++++++||++++.++.|.++++.+++.+
T Consensus 77 ~~Fsv~~l~E~l~~n~l~af~~i~~av~fi 106 (108)
T PF04342_consen 77 APFSVFYLGEPLKWNYLWAFLCILGAVYFI 106 (108)
T ss_pred HHHHHHHhCCCccHHHHHHHHHHHHhhhee
Confidence 456788999999999999999999998764
No 86
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.93 E-value=5.4 Score=35.68 Aligned_cols=114 Identities=13% Similarity=0.187 Sum_probs=78.1
Q ss_pred HHHHHHHHhhcc--hHHHHHHHHHHHHHHHHHHHHHH--hccccccccccchhhH--HHHHHHHHHHHHHHHHHHHHHHh
Q 026497 74 YILQAITLKEFP--ALIVMLCYQYFFSTILAAMFSLT--VVTELSAWKLRLDVGL--FAIAYSAVIGAAFLTTLLLWCLM 147 (237)
Q Consensus 74 ~v~~~~~~~~~~--~~~~~t~~~~~~g~l~~~~~~~~--~~~~~~~~~~~~~~~~--~~llylgi~~t~la~~l~~~~l~ 147 (237)
++..|-.+.+++ ..+.+...|.+...+.....-.. .+.++-.|.. ...| .+++|.+-+-|+. .+++
T Consensus 28 ~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~lv~~~~l~~~~--~kk~~P~~~lf~~~i~t~~------~slk 99 (314)
T KOG1444|consen 28 TVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLGLVNFRPLDLRT--AKKWFPVSLLFVGMLFTGS------KSLK 99 (314)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhceeecCCcChHH--HHHHccHHHHHHHHHHHcc------cccc
Confidence 344454454443 34555669999888777665543 1112222321 2234 3566655544443 7889
Q ss_pred ccChhhhhhhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhh
Q 026497 148 RAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVV 195 (237)
Q Consensus 148 ~~~a~~~s~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~ 195 (237)
+++.....++-.+.|+..++....++|-+++...+.....++.|-.+.
T Consensus 100 ~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~ 147 (314)
T KOG1444|consen 100 YLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAA 147 (314)
T ss_pred ccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999888888775543
No 87
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=87.37 E-value=28 Score=33.40 Aligned_cols=42 Identities=14% Similarity=0.118 Sum_probs=23.4
Q ss_pred hhhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhh
Q 026497 155 SMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVM 196 (237)
Q Consensus 155 s~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~ 196 (237)
..+....|+-+.+.|.+.-.-.+.....++++.++++..+..
T Consensus 350 ~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~ 391 (524)
T PF05977_consen 350 MVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIAL 391 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence 344555788888888765444444444455554444444443
No 88
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.96 E-value=1 Score=33.39 Aligned_cols=32 Identities=16% Similarity=0.227 Sum_probs=28.5
Q ss_pred HHHHHHHhcCCcchhhHHHHHHHHHHHhhhhc
Q 026497 166 TVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMW 197 (237)
Q Consensus 166 ~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~ 197 (237)
+.++++.++|++.|.++.|..+++.|++...+
T Consensus 84 v~Fsvfyl~epl~~~~l~a~~~i~gav~fiFr 115 (116)
T COG3169 84 VPFSVFYLKEPLRWNYLWAFLLILGAVYFIFR 115 (116)
T ss_pred HHHHHHHHcCcchHHHHHHHHHHHHHHHHhcc
Confidence 56789999999999999999999999987654
No 89
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=86.84 E-value=21 Score=31.31 Aligned_cols=100 Identities=9% Similarity=0.007 Sum_probs=71.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhcccccccccc-chhhHHHHHHHHHHHHHH
Q 026497 59 GGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLR-LDVGLFAIAYSAVIGAAF 137 (237)
Q Consensus 59 G~ll~llaa~~~a~y~v~~~~~~~~~~~~~~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~-~~~~~~~llylgi~~t~l 137 (237)
-.++++.++++--...-+.|.+..... +.-.+.+-..++++++.++. + +|... ...+|..++..|+ +.+.
T Consensus 13 p~~~ll~amvsiq~Gas~Ak~LFP~vG-~~g~t~lRl~~aaLIll~l~----R---Pwr~r~~~~~~~~~~~yGv-sLg~ 83 (292)
T COG5006 13 PILALLVAMVSIQSGASFAKSLFPLVG-AAGVTALRLAIAALILLALF----R---PWRRRLSKPQRLALLAYGV-SLGG 83 (292)
T ss_pred cHHHHHHHHHHHHhhHHHHHHHccccC-hhhHHHHHHHHHHHHHHHHh----h---HHHhccChhhhHHHHHHHH-HHHH
Confidence 466777777777777777787776664 67888888888988887654 2 23211 1245777766676 5666
Q ss_pred HHHHHHHHHhccChhhhhhhhhhHHHHHHH
Q 026497 138 LTTLLLWCLMRAGPLYVSMFKPLAILFSTV 167 (237)
Q Consensus 138 a~~l~~~~l~~~~a~~~s~~~~l~Pv~a~l 167 (237)
-..+++.++++++-..+-.+-++-|+.-.+
T Consensus 84 MNl~FY~si~riPlGiAVAiEF~GPL~vA~ 113 (292)
T COG5006 84 MNLLFYLSIERIPLGIAVAIEFTGPLAVAL 113 (292)
T ss_pred HHHHHHHHHHhccchhhhhhhhccHHHHHH
Confidence 678888999999999988888888865543
No 90
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=85.60 E-value=1.6 Score=36.74 Aligned_cols=47 Identities=21% Similarity=0.423 Sum_probs=31.1
Q ss_pred ChhhhhhhhhhHHHHHHHHHHHHhcCCcc-hhhHHHH-HHHHHHHhhhh
Q 026497 150 GPLYVSMFKPLAILFSTVMGVIIFGDGLF-LGSLVGA-VIIVIGFYVVM 196 (237)
Q Consensus 150 ~a~~~s~~~~l~Pv~a~ll~~l~lgE~l~-~~~~iG~-~lIl~Gv~l~~ 196 (237)
.+...+.+..+.|..+..+|..+-+--.. +.+++|+ +|+..|+.+..
T Consensus 32 ~~l~ig~~~~~~~~lg~~~G~~~~~~i~~~~~~~ig~~iLi~iG~~mi~ 80 (206)
T TIGR02840 32 SNLIIAVISGLFIFISMLLGKFLAKFLPPKVTEILGAFILIAIGIWIIY 80 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHH
Confidence 34556677778889998888866543333 4566655 55557987654
No 91
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=84.91 E-value=1.8 Score=34.31 Aligned_cols=27 Identities=15% Similarity=0.229 Sum_probs=20.2
Q ss_pred HhccChhhhhhhhhhHHHHHHHHHHHH
Q 026497 146 LMRAGPLYVSMFKPLAILFSTVMGVII 172 (237)
Q Consensus 146 l~~~~a~~~s~~~~l~Pv~a~ll~~l~ 172 (237)
+..-+.-+++.+.|+.|+++++++.++
T Consensus 69 i~EkslL~sA~LvYi~PL~~l~v~~~L 95 (150)
T COG3086 69 IEEKSLLKSALLVYIFPLVGLFLGAIL 95 (150)
T ss_pred cCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677888889999988887755
No 92
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.16 E-value=1.5 Score=39.40 Aligned_cols=76 Identities=17% Similarity=0.123 Sum_probs=50.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccChhhhhhhhhhH-HHHHHHHHHHHhcC--Ccchh----hHHHHHHHHHHHhhh
Q 026497 123 GLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLA-ILFSTVMGVIIFGD--GLFLG----SLVGAVIIVIGFYVV 195 (237)
Q Consensus 123 ~~~~llylgi~~t~la~~l~~~~l~~~~a~~~s~~~~l~-Pv~a~ll~~l~lgE--~l~~~----~~iG~~lIl~Gv~l~ 195 (237)
.|..++.+ +.+...-..-.|++++...++.+++..+.. -.++++.|.+++.| ..+.. .+.|+..|+.|+++.
T Consensus 226 ty~~~l~~-~~~~~~Q~~yLNkAL~~fntslV~PiyyV~fTtl~I~as~I~Fkew~~~~~~~i~~~~~Gf~ti~~G~flL 304 (335)
T KOG2922|consen 226 TWIFLLVV-ATCVSTQMNYLNKALDLFNTSIVSPIYYVMFTTLVILASAILFKEWSGQDALDIAGELCGFVTIFLGIFLL 304 (335)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHhhheeeEe
Confidence 34443333 224444455568999999999888777764 46667777888877 33333 456888899999886
Q ss_pred hccc
Q 026497 196 MWGK 199 (237)
Q Consensus 196 ~~~~ 199 (237)
...|
T Consensus 305 ~~~k 308 (335)
T KOG2922|consen 305 HRTK 308 (335)
T ss_pred eeec
Confidence 4443
No 93
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=82.00 E-value=2 Score=33.42 Aligned_cols=23 Identities=17% Similarity=0.306 Sum_probs=17.7
Q ss_pred ChhhhhhhhhhHHHHHHHHHHHH
Q 026497 150 GPLYVSMFKPLAILFSTVMGVII 172 (237)
Q Consensus 150 ~a~~~s~~~~l~Pv~a~ll~~l~ 172 (237)
...+++.+.|+.|+++++++.++
T Consensus 66 ~~~~aa~l~Y~lPll~li~g~~l 88 (135)
T PF04246_consen 66 SLLKAAFLVYLLPLLALIAGAVL 88 (135)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 34467788889999998888755
No 94
>PF15099 PIRT: Phosphoinositide-interacting protein family
Probab=81.76 E-value=0.58 Score=36.11 Aligned_cols=17 Identities=18% Similarity=0.210 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 026497 125 FAIAYSAVIGAAFLTTL 141 (237)
Q Consensus 125 ~~llylgi~~t~la~~l 141 (237)
..++..|+..|+++|.+
T Consensus 57 ~vili~GvvvT~vays~ 73 (129)
T PF15099_consen 57 VVILIAGVVVTAVAYSF 73 (129)
T ss_pred HHHHHHhhHhheeeEee
Confidence 45666788888888876
No 95
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=81.75 E-value=3.5 Score=36.61 Aligned_cols=64 Identities=13% Similarity=0.177 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHhccChhhhhhhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhcc
Q 026497 135 AAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWG 198 (237)
Q Consensus 135 t~la~~l~~~~l~~~~a~~~s~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~~ 198 (237)
-..+-.+.+.++....|+.--+.---.-+|.-+++.-+|+.+++..||+|+..+.+|+.++-..
T Consensus 96 Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~ 159 (372)
T KOG3912|consen 96 DIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSL 159 (372)
T ss_pred HHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeee
Confidence 3444455555666666655555555577899999999999999999999999999999876543
No 96
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=80.88 E-value=1.8 Score=33.47 Aligned_cols=17 Identities=35% Similarity=0.417 Sum_probs=0.0
Q ss_pred CccccccccccCCCccccc
Q 026497 214 SELSSEKVPLLQNSTEDTK 232 (237)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~ 232 (237)
+++.|.|.|| +|+|.|.
T Consensus 103 P~~~d~~~p~--~~~~~~~ 119 (122)
T PF01102_consen 103 PEEDDTDVPL--SSVEIEN 119 (122)
T ss_dssp -------------------
T ss_pred CCCCCCCCCc--ceeeecC
Confidence 3333566665 4555443
No 97
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=77.84 E-value=4.8 Score=31.38 Aligned_cols=15 Identities=13% Similarity=0.623 Sum_probs=8.1
Q ss_pred hHHHHHHHHHHHhhh
Q 026497 181 SLVGAVIIVIGFYVV 195 (237)
Q Consensus 181 ~~iG~~lIl~Gv~l~ 195 (237)
.++|..+++.|+...
T Consensus 89 ~i~g~~~~~~G~~~i 103 (136)
T PF08507_consen 89 IIIGLLLFLVGVIYI 103 (136)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345666666665433
No 98
>PF04306 DUF456: Protein of unknown function (DUF456); InterPro: IPR007403 This is a family of putative membrane proteins.
Probab=77.72 E-value=32 Score=27.02 Aligned_cols=73 Identities=15% Similarity=0.198 Sum_probs=49.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccChhhhhhhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHH-HHHHhhhhccccc
Q 026497 123 GLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVII-VIGFYVVMWGKAK 201 (237)
Q Consensus 123 ~~~~llylgi~~t~la~~l~~~~l~~~~a~~~s~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lI-l~Gv~l~~~~~~~ 201 (237)
.+..+..+.+.+.++-|..-.+..||.|+++.+.+.. ..+.+.+.+++. .+|.++- +.|.++.++.++|
T Consensus 32 ~l~~~~~l~~l~~~~d~~~~~~~ak~~G~s~~~~~ga---~iG~IvG~f~~~-------p~G~iiG~~~Ga~l~El~~~~ 101 (140)
T PF04306_consen 32 FLAILAVLALLGEVLDYLAGAYGAKRFGASRWGIWGA---IIGGIVGFFVLP-------PLGLIIGPFLGAFLGELLRGK 101 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH---HHHHHHHHHHhh-------HHHHHHHHHHHHHHHHHHhCC
Confidence 3455566677888999999999999999999998754 456666665544 1143332 3677777765555
Q ss_pred cccc
Q 026497 202 EENT 205 (237)
Q Consensus 202 ~~~~ 205 (237)
+.++
T Consensus 102 ~~~~ 105 (140)
T PF04306_consen 102 DFRR 105 (140)
T ss_pred CHHH
Confidence 4443
No 99
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=75.07 E-value=30 Score=32.81 Aligned_cols=48 Identities=4% Similarity=0.098 Sum_probs=32.0
Q ss_pred hhhhhhhhHHHHHHHHHHHHhcC-----CcchhhHHHHHHHHHHHhhhhcccc
Q 026497 153 YVSMFKPLAILFSTVMGVIIFGD-----GLFLGSLVGAVIIVIGFYVVMWGKA 200 (237)
Q Consensus 153 ~~s~~~~l~Pv~a~ll~~l~lgE-----~l~~~~~iG~~lIl~Gv~l~~~~~~ 200 (237)
...+|+.+--+.-.++-.+=-++ .++..|++..+++++|+++..+.++
T Consensus 225 lf~lYli~Ygi~RF~iEflR~d~~~~~~gl~~~Q~lSl~~il~gl~~~~~~~~ 277 (460)
T PRK13108 225 LFGFYVAFYCAGRFCVELLRDDPATLIAGIRINSFTSTFVFIGAVVYIILAPK 277 (460)
T ss_pred HHHHHHHHHHHHHHHhhhhccCchhhhcCccHHHHHHHHHHHHHHHHHHHhhc
Confidence 44566666666666665432122 2788999999999999877765443
No 100
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=74.51 E-value=1.1 Score=33.83 Aligned_cols=28 Identities=14% Similarity=0.213 Sum_probs=25.5
Q ss_pred ccceeeccCCCcchhhHHHhHHhHHHHH
Q 026497 2 EKLKWRSKSSQAKSLGTIVSIAGAFVVT 29 (237)
Q Consensus 2 e~~~lrer~s~~~~~Gi~la~~Gv~ll~ 29 (237)
..++++|+++..+++|+.+-++|++.+.
T Consensus 75 g~~~f~e~~~~~~~~gi~lIi~GVi~l~ 102 (110)
T PRK09541 75 SWGFFGQRLDLPAIIGMMLICAGVLVIN 102 (110)
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 4578999999999999999999998875
No 101
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=74.00 E-value=1.1 Score=34.44 Aligned_cols=28 Identities=21% Similarity=0.252 Sum_probs=25.3
Q ss_pred ccceeeccCCCcchhhHHHhHHhHHHHH
Q 026497 2 EKLKWRSKSSQAKSLGTIVSIAGAFVVT 29 (237)
Q Consensus 2 e~~~lrer~s~~~~~Gi~la~~Gv~ll~ 29 (237)
..++++|+++..|++|+.+-++|++.+-
T Consensus 75 g~~~f~E~~s~~~~~gi~lIi~GVi~l~ 102 (120)
T PRK10452 75 SVLLFDESLSLMKIAGLTTLVAGIVLIK 102 (120)
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHhh
Confidence 3578999999999999999999998875
No 102
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=73.14 E-value=71 Score=28.76 Aligned_cols=10 Identities=10% Similarity=0.331 Sum_probs=5.7
Q ss_pred HHHHHHHHHH
Q 026497 161 AILFSTVMGV 170 (237)
Q Consensus 161 ~Pv~a~ll~~ 170 (237)
.|+...+++-
T Consensus 111 lpi~~~l~g~ 120 (385)
T PF03547_consen 111 LPILQALFGE 120 (385)
T ss_pred HHHHHHHhcc
Confidence 5666655554
No 103
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=71.74 E-value=13 Score=33.46 Aligned_cols=122 Identities=17% Similarity=0.156 Sum_probs=77.2
Q ss_pred HHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhccc-ccc-ccccchhhHHHHHHHHHHHHHHHHHHHHHHHhccChhh
Q 026497 76 LQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTE-LSA-WKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLY 153 (237)
Q Consensus 76 ~~~~~~~~~~~~~~~t~~~~~~g~l~~~~~~~~~~~~-~~~-~~~~~~~~~~~llylgi~~t~la~~l~~~~l~~~~a~~ 153 (237)
+.+...++++-|+-++..++++=-++....-...+.. +.. -...|....--+.=.| +++++--.+-||++++.+-+.
T Consensus 34 ~~~~~~~~f~fPLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPta-lata~DIGLSN~sl~yVtlSl 112 (349)
T KOG1443|consen 34 YFKWLTKNFHFPLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRRLAPTA-LATALDIGLSNWSLEYVTLSL 112 (349)
T ss_pred HhhhhhcCcCCchHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHHHhhhhh-hhhhcccccccceeeeeeeee
Confidence 4455455554477777777655443333332222221 110 0011111110111122 366777778899999999888
Q ss_pred hhhhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhcc
Q 026497 154 VSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWG 198 (237)
Q Consensus 154 ~s~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~~ 198 (237)
-++.-.=.++|-.++|.++-=|+++|....=..+|-.|+++..++
T Consensus 113 YTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~K 157 (349)
T KOG1443|consen 113 YTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYK 157 (349)
T ss_pred eeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEec
Confidence 888888899999999999999999999988888888898876554
No 104
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=70.25 E-value=20 Score=26.92 Aligned_cols=38 Identities=21% Similarity=0.174 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhcccc
Q 026497 163 LFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKA 200 (237)
Q Consensus 163 v~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~~~~ 200 (237)
+.+.++.+++=|.+++.+.++|.++-+.|+.+....++
T Consensus 70 ~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~pR 107 (109)
T COG1742 70 AASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFGPR 107 (109)
T ss_pred HHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeCCC
Confidence 67788889899999999999999999999887776654
No 105
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=66.73 E-value=0.5 Score=40.95 Aligned_cols=130 Identities=15% Similarity=0.220 Sum_probs=81.2
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHhhcc--hHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhhHHHHHHHH
Q 026497 54 SNWILGGFYLAAQAILISAWYILQAITLKEFP--ALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSA 131 (237)
Q Consensus 54 ~~~~~G~ll~llaa~~~a~y~v~~~~~~~~~~--~~~~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~llylg 131 (237)
++...|....+.+.+.|-.|.++.+... .+ +.+--.+.-|.++++.+... -++... .+..|..++ -|
T Consensus 148 ~n~kkgi~~L~iSt~GYv~yvvl~~~f~--v~g~saiLPqAiGMv~~ali~~~~---~~~~~~-----~K~t~~nii-~G 216 (288)
T COG4975 148 SNLKKGIVILLISTLGYVGYVVLFQLFD--VDGLSAILPQAIGMVIGALILGFF---KMEKRF-----NKYTWLNII-PG 216 (288)
T ss_pred HhhhhheeeeeeeccceeeeEeeecccc--ccchhhhhHHHHHHHHHHHHHhhc---ccccch-----HHHHHHHHh-hH
Confidence 3456788888899999999999855432 21 12222344455555433221 111110 112233222 12
Q ss_pred HHHHHHHHHHHHHHHhccChhhhhhhhhhHHHHHHHHHHHHhcCCcchhhH----HHHHHHHHHHhhh
Q 026497 132 VIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSL----VGAVIIVIGFYVV 195 (237)
Q Consensus 132 i~~t~la~~l~~~~l~~~~a~~~s~~~~l~Pv~a~ll~~l~lgE~l~~~~~----iG~~lIl~Gv~l~ 195 (237)
+ .=+++-..+..+.++.|....-.+.-+--+++.+-|.++|+|+=|..++ +|.++++.|..+.
T Consensus 217 ~-~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~l 283 (288)
T COG4975 217 L-IWAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAILL 283 (288)
T ss_pred H-HHHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhhhh
Confidence 2 1255677777888888887777777788899999999999999987764 5788888775543
No 106
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=65.93 E-value=6.6 Score=34.76 Aligned_cols=50 Identities=20% Similarity=0.419 Sum_probs=42.8
Q ss_pred hhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhccccccccc
Q 026497 156 MFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAKEENT 205 (237)
Q Consensus 156 ~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~~~~~~~~~ 205 (237)
++-.-.++..++++|+++|.+-+..|+...+++-+|+++....+.++.++
T Consensus 96 IfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~ 145 (330)
T KOG1583|consen 96 IFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRS 145 (330)
T ss_pred EEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcchhh
Confidence 34455678999999999999999999999999999999988877665555
No 107
>PRK11469 hypothetical protein; Provisional
Probab=64.68 E-value=9 Score=31.72 Aligned_cols=43 Identities=19% Similarity=0.194 Sum_probs=30.2
Q ss_pred hhhhhhhHHHHHHHHHHHHhcCCcchhhHHHHHH-HHHHHhhhh
Q 026497 154 VSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVI-IVIGFYVVM 196 (237)
Q Consensus 154 ~s~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~l-Il~Gv~l~~ 196 (237)
.+.++.+.|..+..+|-.+-+-...+.+++|..+ +..|+++..
T Consensus 43 ~g~~q~~m~~~g~~~G~~l~~~i~~~~~~i~~~lL~~lG~~mi~ 86 (188)
T PRK11469 43 FGAVETLTPLIGWGMGMLASRFVLEWNHWIAFVLLIFLGGRMII 86 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566788999999998876555455667777654 447887754
No 108
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=64.24 E-value=7 Score=31.33 Aligned_cols=21 Identities=14% Similarity=0.286 Sum_probs=15.2
Q ss_pred hhhhhhhhhHHHHHHHHHHHH
Q 026497 152 LYVSMFKPLAILFSTVMGVII 172 (237)
Q Consensus 152 ~~~s~~~~l~Pv~a~ll~~l~ 172 (237)
.+++.+.|+.|+++++.+.++
T Consensus 75 lkaa~lvYllPLl~li~ga~l 95 (154)
T PRK10862 75 LRSALLVYMTPLVGLFLGAAL 95 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455667788898888877644
No 109
>PRK12437 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=61.88 E-value=49 Score=28.89 Aligned_cols=48 Identities=8% Similarity=0.178 Sum_probs=32.7
Q ss_pred hhhhhhhhhHHHHHHHHHHHHhcC-----CcchhhHHHHHHHHHHHhhhhccc
Q 026497 152 LYVSMFKPLAILFSTVMGVIIFGD-----GLFLGSLVGAVIIVIGFYVVMWGK 199 (237)
Q Consensus 152 ~~~s~~~~l~Pv~a~ll~~l~lgE-----~l~~~~~iG~~lIl~Gv~l~~~~~ 199 (237)
...+.+..+-.+.-.+...+=-++ .+|..|+++..+++.|+.+..+++
T Consensus 205 ~~f~~yl~~Y~~~Rf~iEf~R~~~~~~~~~ls~~Q~~sl~~i~~g~~~~~~~~ 257 (269)
T PRK12437 205 EVFALYLIWYSIGRFFIEGLRTDSLMLFGWLRIAQVISIPLIIIGIILIIYRR 257 (269)
T ss_pred hhHHHHHHHHHHHHHhhhhhccCchhhhcChhHHHHHHHHHHHHHHHHHHHHH
Confidence 355667767777777776541111 368899999999999987764443
No 110
>PF13994 PgaD: PgaD-like protein
Probab=60.06 E-value=26 Score=27.35 Aligned_cols=20 Identities=15% Similarity=0.365 Sum_probs=10.6
Q ss_pred HHHHHHHHHhhhhccccccc
Q 026497 184 GAVIIVIGFYVVMWGKAKEE 203 (237)
Q Consensus 184 G~~lIl~Gv~l~~~~~~~~~ 203 (237)
..++++.++.+..|.+.+..
T Consensus 68 ~~i~~~~a~~Li~Wa~yn~~ 87 (138)
T PF13994_consen 68 LLIALVNAVILILWAKYNRL 87 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666654433
No 111
>PF11295 DUF3096: Protein of unknown function (DUF3096); InterPro: IPR021446 This entry is represented by the archaeal Thermoproteus tenax spherical virus 1, Orf18. The characteristics of the protein distribution suggest prophage matches and lateral genetic transfer in addition to the phage matches.
Probab=53.22 E-value=13 Score=22.75 Aligned_cols=32 Identities=25% Similarity=0.456 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhcCCcchhhHHHHHHHHHHHh
Q 026497 162 ILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFY 193 (237)
Q Consensus 162 Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~ 193 (237)
|+.+.+.|++++=-+=-...++|.-+|+.|+.
T Consensus 1 pi~aliaGiLiLi~PrllnyiVaiyLI~~G~l 32 (39)
T PF11295_consen 1 PILALIAGILILIMPRLLNYIVAIYLIVIGLL 32 (39)
T ss_pred CHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788888888877767778889999998875
No 112
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=51.62 E-value=2.2e+02 Score=27.68 Aligned_cols=41 Identities=7% Similarity=0.298 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Q 026497 59 GGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTI 100 (237)
Q Consensus 59 G~ll~llaa~~~a~y~v~~~~~~~~~~~~~~~t~~~~~~g~l 100 (237)
=.+++++++++.-.|.+..|+ .++.|.+..+....+++|.+
T Consensus 11 ~~~~~l~~~~~~~~~~~~~~~-~~~lP~s~llil~GlllG~i 51 (559)
T TIGR00840 11 FILWILLASLAKIGFHLTHKV-IRAVPESVLLIVYGLLVGGI 51 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhh-cccCCHHHHHHHHHHHHHHH
Confidence 356777888888877776444 45677666666666666654
No 113
>COG4657 RnfA Predicted NADH:ubiquinone oxidoreductase, subunit RnfA [Energy production and conversion]
Probab=51.48 E-value=29 Score=28.27 Aligned_cols=27 Identities=11% Similarity=0.303 Sum_probs=14.8
Q ss_pred cceeeccCCCcchhhHHH-------hHHhHHHHH
Q 026497 3 KLKWRSKSSQAKSLGTIV-------SIAGAFVVT 29 (237)
Q Consensus 3 ~~~lrer~s~~~~~Gi~l-------a~~Gv~ll~ 29 (237)
-+..|..|+..+.+|+.+ ++.|+.++.
T Consensus 90 m~v~KtsP~LYr~LGIfLPLITTNCaVLgvaLln 123 (193)
T COG4657 90 MVVRKTSPTLYRLLGIFLPLITTNCAVLGVALLN 123 (193)
T ss_pred HHHHccCHHHHHHHHHhhhhHhhchHHHHHHHHH
Confidence 344455566666666654 345555554
No 114
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=50.54 E-value=3.8 Score=36.25 Aligned_cols=105 Identities=15% Similarity=0.297 Sum_probs=71.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhccc-----cccccc--cchhhH--HHHHHHHHHHHHHHHHHHHHHHhccChhhhh
Q 026497 85 PALIVMLCYQYFFSTILAAMFSLTVVTE-----LSAWKL--RLDVGL--FAIAYSAVIGAAFLTTLLLWCLMRAGPLYVS 155 (237)
Q Consensus 85 ~~~~~~t~~~~~~g~l~~~~~~~~~~~~-----~~~~~~--~~~~~~--~~llylgi~~t~la~~l~~~~l~~~~a~~~s 155 (237)
+.|+-++.+|++....+...+.-..-.- +...+. ...... ++++|. ..-..=+..+++.|.+.--
T Consensus 59 d~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlplsvVfi------~mI~fnnlcL~yVgVaFYy 132 (347)
T KOG1442|consen 59 DAPLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQVLPLSVVFI------LMISFNNLCLKYVGVAFYY 132 (347)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhhcchhheee------eehhccceehhhcceEEEE
Confidence 4578889999998888777766443211 111111 111111 122222 1123346788888888777
Q ss_pred hhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhh
Q 026497 156 MFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVV 195 (237)
Q Consensus 156 ~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~ 195 (237)
+--.+.-+|.+++.+++|+++-+..-..++.+|+.|..+-
T Consensus 133 vgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lG 172 (347)
T KOG1442|consen 133 VGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLG 172 (347)
T ss_pred eccchhhhHHHHhHHhhcccccccccceeehhheehheec
Confidence 7778899999999999999999999999999999997753
No 115
>PF15108 TMEM37: Voltage-dependent calcium channel gamma-like subunit protein family
Probab=49.77 E-value=90 Score=25.31 Aligned_cols=74 Identities=18% Similarity=0.227 Sum_probs=44.6
Q ss_pred hhHHHhHHhHHHHHHhcCCCccCCCCccccccccCcccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcc--hHHHHHHH
Q 026497 16 LGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLKEFP--ALIVMLCY 93 (237)
Q Consensus 16 ~Gi~la~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~llaa~~~a~y~v~~~~~~~~~~--~~~~~t~~ 93 (237)
++++.++.|.=++..++-- ++..+...|..|..+++.+.+.-+...+.---+++++. -.+++++|
T Consensus 93 lAVV~AIFGLElLmvSQvc-------------Ed~~SrrKWamGs~LlLvsfvlSs~GllsFviLL~~~vtl~GFTL~fW 159 (184)
T PF15108_consen 93 LAVVVAIFGLELLMVSQVC-------------EDAHSRRKWAMGSVLLLVSFVLSSGGLLSFVILLRNQVTLIGFTLMFW 159 (184)
T ss_pred HHHHHHHHhHHHHHHHHHH-------------hcchhhhhhhhhhHHHHHHHHHhcccHHHHHHHHhcchhhhhhHHHHH
Confidence 4667778888666544311 11223456889999998887776665544444444432 14678888
Q ss_pred HHHHHHHHH
Q 026497 94 QYFFSTILA 102 (237)
Q Consensus 94 ~~~~g~l~~ 102 (237)
.=+.++.++
T Consensus 160 CeFtAsFLf 168 (184)
T PF15108_consen 160 CEFTASFLF 168 (184)
T ss_pred HHHHHHHHH
Confidence 666655443
No 116
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=49.58 E-value=11 Score=23.67 Aligned_cols=15 Identities=20% Similarity=0.355 Sum_probs=6.9
Q ss_pred chhhHHHHHHHHHHH
Q 026497 178 FLGSLVGAVIIVIGF 192 (237)
Q Consensus 178 ~~~~~iG~~lIl~Gv 192 (237)
+|...+=.++|++|+
T Consensus 3 ~wlt~iFsvvIil~I 17 (49)
T PF11044_consen 3 TWLTTIFSVVIILGI 17 (49)
T ss_pred hHHHHHHHHHHHHHH
Confidence 344444444455554
No 117
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=49.39 E-value=15 Score=23.76 Aligned_cols=27 Identities=19% Similarity=0.444 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHhhhhccccccccccc
Q 026497 181 SLVGAVIIVIGFYVVMWGKAKEENTID 207 (237)
Q Consensus 181 ~~iG~~lIl~Gv~l~~~~~~~~~~~~~ 207 (237)
.++++++.++|+++..-+|-+.+.+++
T Consensus 19 Li~A~vlfi~Gi~iils~kckCk~~qk 45 (50)
T PF02038_consen 19 LIFAGVLFILGILIILSGKCKCKFNQK 45 (50)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHSTT
T ss_pred hHHHHHHHHHHHHHHHcCccccCCCCC
Confidence 356677788888776665544444444
No 118
>PRK00052 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=49.14 E-value=1e+02 Score=26.83 Aligned_cols=46 Identities=17% Similarity=0.340 Sum_probs=31.6
Q ss_pred hhhhhhhhHHHHHHHHHHHHhcC-----CcchhhHHHHHHHHHHHhhhhcc
Q 026497 153 YVSMFKPLAILFSTVMGVIIFGD-----GLFLGSLVGAVIIVIGFYVVMWG 198 (237)
Q Consensus 153 ~~s~~~~l~Pv~a~ll~~l~lgE-----~l~~~~~iG~~lIl~Gv~l~~~~ 198 (237)
..+.+..+-.+.-.+...+=-++ .++..|+++..+++.|+.+..++
T Consensus 208 ~f~~yl~~Y~~~Rf~iE~~R~~~~~~~~~ls~~Q~isl~~~~~gi~~~~~~ 258 (269)
T PRK00052 208 VFGLYLIGYGLGRFFIEFFREPDAQLGGGLTMGQILSIPMILLGIILLIWA 258 (269)
T ss_pred HHHHHHHHHHHHHHhhhhhccCchhhccCcCHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666432232 25889999999999998876554
No 119
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=48.53 E-value=5.8 Score=35.12 Aligned_cols=25 Identities=16% Similarity=0.313 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhccChhhhhhhhh
Q 026497 135 AAFLTTLLLWCLMRAGPLYVSMFKP 159 (237)
Q Consensus 135 t~la~~l~~~~l~~~~a~~~s~~~~ 159 (237)
-+++-++|.|.+++++|+.-.+..+
T Consensus 118 LaL~vW~Ym~lLr~~GAs~WtiLaF 142 (381)
T PF05297_consen 118 LALGVWFYMWLLRELGASFWTILAF 142 (381)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3556677778999999987665544
No 120
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=46.58 E-value=2.6e+02 Score=26.50 Aligned_cols=16 Identities=13% Similarity=0.185 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 026497 87 LIVMLCYQYFFSTILA 102 (237)
Q Consensus 87 ~~~~t~~~~~~g~l~~ 102 (237)
|......|..+..++.
T Consensus 331 P~~a~~~~~~i~~l~~ 346 (507)
T TIGR00910 331 PVPLVIIQGIITSIAG 346 (507)
T ss_pred cHHHHHHHHHHHHHHH
Confidence 5555556665555433
No 121
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=46.42 E-value=2.2e+02 Score=25.63 Aligned_cols=127 Identities=10% Similarity=0.100 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHHh-hc-------chHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHH
Q 026497 68 ILISAWYILQAITLK-EF-------PALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLT 139 (237)
Q Consensus 68 ~~~a~y~v~~~~~~~-~~-------~~~~~~t~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~llylgi~~t~la~ 139 (237)
.++-.+.++++|+.+ +| .++.-+..-|-+.+.+..... +.... .. ......|.---+.++ ...++-
T Consensus 24 ~t~l~~gVlQEki~T~~y~~~~~rF~~~~fL~~~q~l~~~~~s~~~--l~~~k-~~--~~~~apl~~y~~is~-tn~~s~ 97 (327)
T KOG1581|consen 24 ATFLTWGVLQEKIMTRPYGEDGERFEHSLFLVFCQRLVALLVSYAM--LKWWK-KE--LSGVAPLYKYSLISF-TNTLSS 97 (327)
T ss_pred HHHHHHHHHhcceeecccCcccccccccHHHHHHHHHHHHHHHHHH--Hhccc-cc--CCCCCchhHHhHHHH-Hhhcch
Confidence 344445667777643 23 234555666665555444222 11111 00 001122333333343 566777
Q ss_pred HHHHHHHhccCh--hhhhhhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhcccccc
Q 026497 140 TLLLWCLMRAGP--LYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAKE 202 (237)
Q Consensus 140 ~l~~~~l~~~~a--~~~s~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~~~~~~ 202 (237)
.+.+.++|+++= ...+=--=+.|| ++++.++.+.+.++...+-+.+|-+|+.+....++.+
T Consensus 98 ~~~yeaLKyvSyPtq~LaKscKmIPV--mlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~ 160 (327)
T KOG1581|consen 98 WCGYEALKYVSYPTQTLAKSCKMIPV--MLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSD 160 (327)
T ss_pred HHHHHHHHhccchHHHHHHHhhhhHH--HHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCC
Confidence 888899999862 223333345565 6789999999999999999999999998877776654
No 122
>PF07444 Ycf66_N: Ycf66 protein N-terminus; InterPro: IPR010004 This entry represents Ycf66, a protein that is restricted to the chloroplasts of simple plants and algae. It is also found in the cyanobacteria. The function is unknown. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=42.55 E-value=21 Score=25.69 Aligned_cols=33 Identities=18% Similarity=0.219 Sum_probs=23.6
Q ss_pred CCcchhhHHHHHHHHHHHhhhhccccccccccc
Q 026497 175 DGLFLGSLVGAVIIVIGFYVVMWGKAKEENTID 207 (237)
Q Consensus 175 E~l~~~~~iG~~lIl~Gv~l~~~~~~~~~~~~~ 207 (237)
-.+++..++|.++++.|+.+...+..+++-+.|
T Consensus 3 ~~~~~~~iLgi~l~~~~~~Ly~lr~~~Pev~Rd 35 (84)
T PF07444_consen 3 FGFGPSYILGIILILGGLALYFLRFFRPEVSRD 35 (84)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHCcchhhh
Confidence 356889999999999998877665544443333
No 123
>PF03595 SLAC1: Voltage-dependent anion channel; InterPro: IPR004695 Two members of the Tellurite-Resistance/Dicarboxylate Transporter (TDT) family have been functionally characterised. One is the TehA protein of Escherichia coli which has been implicated in resistance to tellurite; the other is the Mae1 protein of Schizosaccharomyces pombe which functions in the uptake of malate and other dicarboxylates by a proton symport mechanism. These proteins exhibit 10 putative transmembrane a-helical spanners (TMSs).; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3M76_A 3M7C_A 3M7E_A 3M74_A 3M7B_A 3M71_A 3M72_A 3M77_A 3M7L_A 3M75_A ....
Probab=42.19 E-value=2.4e+02 Score=24.76 Aligned_cols=44 Identities=18% Similarity=0.170 Sum_probs=27.8
Q ss_pred cchhhHHHhHHhHHHHHHhcCCCccCCCCccccccccCcccCcchhhHHHHHHHHHHHHH
Q 026497 13 AKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISA 72 (237)
Q Consensus 13 ~~~~Gi~la~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~llaa~~~a~ 72 (237)
..+.|+.++..|+..+. ..-+.. .+.....|.++..++.+.|..
T Consensus 5 ~~~f~~~mGtg~l~~~~-~~~~~~---------------~~~~~~~~~~~~~~~~~l~~~ 48 (330)
T PF03595_consen 5 PAWFGMVMGTGGLSNLL-YLLPYH---------------FGGLAILSEVLFILALILFLV 48 (330)
T ss_dssp GGGGHHHHHHHHHHHHH-HTTTTT---------------STTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHh---------------ccchhHHHHHHHHHHHHHHHH
Confidence 35778889999988774 321110 112235678888888777777
No 124
>COG1971 Predicted membrane protein [Function unknown]
Probab=41.94 E-value=38 Score=28.19 Aligned_cols=42 Identities=17% Similarity=0.332 Sum_probs=31.0
Q ss_pred hhhhhhHHHHHHHHHHHHhcCCcchhhHHHHHH-HHHHHhhhh
Q 026497 155 SMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVI-IVIGFYVVM 196 (237)
Q Consensus 155 s~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~l-Il~Gv~l~~ 196 (237)
+.+..+.|+++...+.++=+-.-.+.+|+|.++ ++.|+++..
T Consensus 44 G~f~~i~pliG~~~g~~~s~~i~~~~~wigf~lL~~lG~~mI~ 86 (190)
T COG1971 44 GVFQAIMPLIGWFIGKFLSTFIAEWAHWIGFVLLIILGLKMII 86 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567778999999999877655556788776654 558987654
No 125
>PRK06638 NADH:ubiquinone oxidoreductase subunit J; Provisional
Probab=40.79 E-value=2.1e+02 Score=23.71 Aligned_cols=25 Identities=24% Similarity=0.506 Sum_probs=20.0
Q ss_pred HHHHHHHhcCCcchhhHHHHHHHHH
Q 026497 166 TVMGVIIFGDGLFLGSLVGAVIIVI 190 (237)
Q Consensus 166 ~ll~~l~lgE~l~~~~~iG~~lIl~ 190 (237)
-.+|..++++-.-+.++.|.+|.++
T Consensus 133 ~~iG~~L~t~y~l~fe~~silLLvA 157 (198)
T PRK06638 133 KAIGILLFTDYLLPFELASVLLLVA 157 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5568888888888888999888774
No 126
>KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=40.37 E-value=32 Score=32.05 Aligned_cols=55 Identities=16% Similarity=0.222 Sum_probs=36.1
Q ss_pred cCCcchhhHHHHHHHHHHHhhhhccccccc--c--ccccc---CCCCCccc----cccccccCCCc
Q 026497 174 GDGLFLGSLVGAVIIVIGFYVVMWGKAKEE--N--TIDDR---GTWSSELS----SEKVPLLQNST 228 (237)
Q Consensus 174 gE~l~~~~~iG~~lIl~Gv~l~~~~~~~~~--~--~~~~~---~~~~~~~~----~~~~~~~~~~~ 228 (237)
.++..+..++-.+|++.++++..+++++.+ + +++.| |.|.|||. .|++|.+.-.+
T Consensus 15 ~~~d~~~~~iE~lLi~~~i~~~~rk~~~~~~~~lt~~eideLiedw~PEPLV~~~~~~~~~~~~~v 80 (467)
T KOG1358|consen 15 YWRDILHTIIETLLIVLVIILLLRKSYKIPVRPLTEQEIDELIEDWEPEPLVPPVPEDHPVLNTPV 80 (467)
T ss_pred hcCChHHHHHHHHHHHHhhheeeeccCCCcccCCCHHHHHHHHhcCCCCCCCCCCcccccccCCcc
Confidence 445558888999999998887766543211 1 22222 38999998 67777766555
No 127
>COG2149 Predicted membrane protein [Function unknown]
Probab=40.18 E-value=51 Score=25.26 Aligned_cols=61 Identities=15% Similarity=0.223 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHhccChhhhhhhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhcc---ccccccc
Q 026497 129 YSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWG---KAKEENT 205 (237)
Q Consensus 129 ylgi~~t~la~~l~~~~l~~~~a~~~s~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~~---~~~~~~~ 205 (237)
|++..=|.+++.....++.+..+... +....+.+|..+|+.|+.+...+ ..+.++.
T Consensus 26 FLAWiRTsLallafGvai~~f~~~l~---------------------~~~~r~~lg~fii~~gil~~a~g~~r~~~~~~a 84 (120)
T COG2149 26 FLAWIRTSLALLAFGVAIDQFVPFLA---------------------TPVIRELLGVFLILVGILLAALGALRWQRVERA 84 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh---------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455677777777777777555433 55567778888888887665433 3333444
Q ss_pred ccccC
Q 026497 206 IDDRG 210 (237)
Q Consensus 206 ~~~~~ 210 (237)
+|+++
T Consensus 85 mrr~~ 89 (120)
T COG2149 85 MRRGF 89 (120)
T ss_pred HHcCC
Confidence 44444
No 128
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=39.39 E-value=3.9e+02 Score=26.36 Aligned_cols=27 Identities=22% Similarity=0.293 Sum_probs=21.6
Q ss_pred ceeeccCCCcchhhHHHhHHhHHHHHH
Q 026497 4 LKWRSKSSQAKSLGTIVSIAGAFVVTF 30 (237)
Q Consensus 4 ~~lrer~s~~~~~Gi~la~~Gv~ll~~ 30 (237)
...||++.+..|+|+++...|+.++..
T Consensus 230 ~s~~~~l~~lD~IG~~L~~~Gl~LfLl 256 (599)
T PF06609_consen 230 LSKREQLKELDWIGIFLFIAGLALFLL 256 (599)
T ss_pred CcHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 345677888899999999999987644
No 129
>TIGR00544 lgt prolipoprotein diacylglyceryl transferase. The conversion of lipoprotein precursors into lipoproteins consists of three steps. First, the enzyme described by this model transfers a diacylglyceryl moiety from phosphatidylglycerol to the side chain of a Cys that will become the new N-terminus. Second, the signal peptide is removed by signal peptidase II. Finally, the free amino group of the new N-terminal Cys is acylated by apolipoprotein N-acyltransferase.
Probab=38.75 E-value=2e+02 Score=25.24 Aligned_cols=46 Identities=9% Similarity=0.154 Sum_probs=31.5
Q ss_pred hhhhhhhhHHHHHHHHHHHHhcC---------CcchhhHHHHHHHHHHHhhhhcc
Q 026497 153 YVSMFKPLAILFSTVMGVIIFGD---------GLFLGSLVGAVIIVIGFYVVMWG 198 (237)
Q Consensus 153 ~~s~~~~l~Pv~a~ll~~l~lgE---------~l~~~~~iG~~lIl~Gv~l~~~~ 198 (237)
....+..+-.+.-.+.-.+=-++ .++..|++...+++.|+.+..+.
T Consensus 213 ~~~~yli~Y~~~Rf~iEf~R~~~~~~~~~~~~~lt~~Q~~sl~~i~~g~~~~~~~ 267 (278)
T TIGR00544 213 IFGVYLIGYGIFRFIIEGLREPDLMLTEFSFLNISMGQILSLLMIAGILIIMLLA 267 (278)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCchhhccccccCCcHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666442221 26889999999999998876543
No 130
>PF11755 DUF3311: Protein of unknown function (DUF3311); InterPro: IPR021741 This is a family of short bacterial proteins of unknwon function.
Probab=38.56 E-value=84 Score=21.32 Aligned_cols=40 Identities=13% Similarity=0.120 Sum_probs=20.3
Q ss_pred hhhHHHHHHHHHHHHhcCC-c--------chhhHHHHHHHHHHHhhhhc
Q 026497 158 KPLAILFSTVMGVIIFGDG-L--------FLGSLVGAVIIVIGFYVVMW 197 (237)
Q Consensus 158 ~~l~Pv~a~ll~~l~lgE~-l--------~~~~~iG~~lIl~Gv~l~~~ 197 (237)
..+.|+.+++....+++.. + -++|++-.++.-+..+++.+
T Consensus 3 ll~iP~l~~l~~~p~~nr~~P~v~G~Pff~~w~~~wv~lts~~~~~~y~ 51 (66)
T PF11755_consen 3 LLLIPFLALLWGPPFYNRVEPTVFGMPFFYWWQLAWVVLTSVCMAIVYR 51 (66)
T ss_pred hHHHHHHHHHHhHHHhccCCccccCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777774444332 2 34455544444444444433
No 131
>PF02659 DUF204: Domain of unknown function DUF; InterPro: IPR003810 Uncharacterised domain in proteins of unknown function.
Probab=37.84 E-value=61 Score=21.62 Aligned_cols=38 Identities=16% Similarity=0.231 Sum_probs=25.4
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHH
Q 026497 151 PLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVII 188 (237)
Q Consensus 151 a~~~s~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lI 188 (237)
+...+.+..+.|..+..+|..+-+..-+..+++|+++.
T Consensus 26 ~~~ig~~~~~~~~~G~~~G~~~~~~~~~~~~~igg~iL 63 (67)
T PF02659_consen 26 ALIIGIFQFIMPLLGLLLGRRLGRFIGSYAEWIGGIIL 63 (67)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667788888888888776644456667766543
No 132
>PF09656 PGPGW: Putative transmembrane protein (PGPGW); InterPro: IPR019099 This entry represents proteins that contain three predicted transmembrane helices and an unusual motif with consensus sequence PGPGW.
Probab=37.78 E-value=1.2e+02 Score=19.88 Aligned_cols=45 Identities=16% Similarity=0.277 Sum_probs=30.8
Q ss_pred chhhHHHhHHhHHHHHHhcCCCccCCCCccccccccCcccCcchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 026497 14 KSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLKE 83 (237)
Q Consensus 14 ~~~Gi~la~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~llaa~~~a~y~v~~~~~~~~ 83 (237)
.++|.++-++|++++.. .| .|.+.++++...+|-+.-..+++.++
T Consensus 5 ~v~G~~lv~~Gii~~~l-PG------------------------pG~l~i~~GL~iLa~ef~wArr~l~~ 49 (53)
T PF09656_consen 5 GVLGWVLVVAGIIMLPL-PG------------------------PGLLVIFLGLAILATEFPWARRLLRR 49 (53)
T ss_pred hhHHHHHHHHHHHhhcC-CC------------------------CcHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 46788888888877652 12 26667777777777777776776554
No 133
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=37.52 E-value=49 Score=25.03 Aligned_cols=56 Identities=20% Similarity=0.293 Sum_probs=39.4
Q ss_pred HHHHHHHHhccChhhhhhhhhh-HHHHHHHHHHHHhcCC-cchhhHHHHHHHHHHHhhh
Q 026497 139 TTLLLWCLMRAGPLYVSMFKPL-AILFSTVMGVIIFGDG-LFLGSLVGAVIIVIGFYVV 195 (237)
Q Consensus 139 ~~l~~~~l~~~~a~~~s~~~~l-~Pv~a~ll~~l~lgE~-l~~~~~iG~~lIl~Gv~l~ 195 (237)
-.+|++-+++.+-+.+..+.+- .-.|+.+.|. .+||. ..-.-++|..+++.|+++.
T Consensus 66 Saly~~tLa~a~islavpv~nsltfafta~~G~-~LGE~~~g~~a~lGt~liv~Gi~Lc 123 (125)
T KOG4831|consen 66 SALYYLTLASAPISLAVPVTNSLTFAFTAIFGK-ALGEETQGGLALLGTSLIVFGIWLC 123 (125)
T ss_pred HHHHHHHHhcCCceeeeeecchhHHHHHHHHHH-HhccccccceeehhhhHHhhhhhhe
Confidence 3456677888887776666543 4456777787 46665 4566778999999998764
No 134
>PRK11111 hypothetical protein; Provisional
Probab=36.84 E-value=1.2e+02 Score=25.69 Aligned_cols=24 Identities=21% Similarity=0.488 Sum_probs=16.0
Q ss_pred HhcCCcchhhHHHHHHHH-HHHhhh
Q 026497 172 IFGDGLFLGSLVGAVIIV-IGFYVV 195 (237)
Q Consensus 172 ~lgE~l~~~~~iG~~lIl-~Gv~l~ 195 (237)
++|=++.-.++.|+++.+ .|+=+.
T Consensus 70 ~fGIsl~afrIaGGiiL~~ial~Ml 94 (214)
T PRK11111 70 LFGISIDSFRIAGGILVVTIAMSMI 94 (214)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHh
Confidence 467777778888776655 566543
No 135
>PRK00159 putative septation inhibitor protein; Reviewed
Probab=36.13 E-value=1.3e+02 Score=21.72 Aligned_cols=56 Identities=7% Similarity=0.039 Sum_probs=37.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhccChhhhhhhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhc
Q 026497 122 VGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMW 197 (237)
Q Consensus 122 ~~~~~llylgi~~t~la~~l~~~~l~~~~a~~~s~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~ 197 (237)
..|...+.+|++..++.+..-+|.-+. -.| +..+-=.|...+|..+++.|+.+..+
T Consensus 30 p~W~~~~m~glm~~GllWlvvyYl~~~-----------~~P---------~m~~lG~WN~~IGFg~~i~G~lmt~r 85 (87)
T PRK00159 30 SVWYVVLMLGLMLIGLAWLVVNYLAGP-----------AIP---------WMADLGPWNYAIGFALMITGLLMTMR 85 (87)
T ss_pred CccHHHHHHHHHHHHHHHHHHHhhccC-----------CCC---------CCcccCchhHHHHHHHHHHHHHHhcc
Confidence 458888888888888888877766331 111 11122247889999999999887653
No 136
>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC. These proteins may be transporters. ; GO: 0016021 integral to membrane
Probab=36.11 E-value=91 Score=26.00 Aligned_cols=25 Identities=24% Similarity=0.449 Sum_probs=16.6
Q ss_pred HhcCCcchhhHHHHHHHH-HHHhhhh
Q 026497 172 IFGDGLFLGSLVGAVIIV-IGFYVVM 196 (237)
Q Consensus 172 ~lgE~l~~~~~iG~~lIl-~Gv~l~~ 196 (237)
++|=+++-.++.|+++.+ .|+=+..
T Consensus 64 ~fgIsl~af~IaGGiiL~~ia~~ml~ 89 (203)
T PF01914_consen 64 FFGISLPAFRIAGGIILFLIALEMLF 89 (203)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 457777778888776665 5665543
No 137
>PF06781 UPF0233: Uncharacterised protein family (UPF0233); InterPro: IPR009619 This is a group of proteins of unknown function.
Probab=35.88 E-value=66 Score=23.30 Aligned_cols=56 Identities=13% Similarity=0.183 Sum_probs=38.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhccChhhhhhhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhc
Q 026497 122 VGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMW 197 (237)
Q Consensus 122 ~~~~~llylgi~~t~la~~l~~~~l~~~~a~~~s~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~ 197 (237)
..|...+.++++..++.+..-+|.-... +-|+- -+| +|...+|..++++|+.+..+
T Consensus 30 p~W~~p~m~~lmllGL~WiVvyYi~~~~----------i~pi~-------~lG---~WN~~IGfg~~~~Gf~mt~r 85 (87)
T PF06781_consen 30 PRWYAPLMLGLMLLGLLWIVVYYISGGQ----------IPPIP-------DLG---NWNLAIGFGLMIVGFLMTMR 85 (87)
T ss_pred CccHHHHHHHHHHHHHHHHhhhhcccCC----------CCCcc-------ccc---chHHHHHHHHHHHHHHHHcc
Confidence 4588888888888888887777665543 00000 111 68889999999999887653
No 138
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=35.31 E-value=46 Score=18.92 Aligned_cols=17 Identities=24% Similarity=0.315 Sum_probs=8.7
Q ss_pred chhhHHHHHHHHHHHhh
Q 026497 178 FLGSLVGAVIIVIGFYV 194 (237)
Q Consensus 178 ~~~~~iG~~lIl~Gv~l 194 (237)
.+..++|.+++..+.++
T Consensus 11 ~~~~~~G~~l~~~~~~~ 27 (34)
T TIGR01167 11 SLLLLLGLLLLGLGGLL 27 (34)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45556666444444433
No 139
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=35.17 E-value=3.3e+02 Score=24.31 Aligned_cols=55 Identities=16% Similarity=0.176 Sum_probs=25.3
Q ss_pred HHHHHHHHh-ccChhhhhhhhhhHH----HHHHHHHHHHhcCCcch--hhHHHHHHHHHHHhhh
Q 026497 139 TTLLLWCLM-RAGPLYVSMFKPLAI----LFSTVMGVIIFGDGLFL--GSLVGAVIIVIGFYVV 195 (237)
Q Consensus 139 ~~l~~~~l~-~~~a~~~s~~~~l~P----v~a~ll~~l~lgE~l~~--~~~iG~~lIl~Gv~l~ 195 (237)
+.......+ +.+++.-+.+....- +.+.+.|++. |.+++ ...+++++.+.++.+.
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~G~l~--~~~G~~~~f~~~~~~~~~~~~~~ 386 (402)
T PRK11902 325 VALLMALCNRSFSATQYALLSALASVGRVYVGPTSGYLV--EAYGWPGFYLMTVVIALPGLALL 386 (402)
T ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhChHHHHHHHHHHHHHHHHHH
Confidence 444444444 445555444333332 2233444333 33343 3456666666776655
No 140
>PRK11010 ampG muropeptide transporter; Validated
Probab=34.97 E-value=3.8e+02 Score=25.04 Aligned_cols=54 Identities=13% Similarity=0.152 Sum_probs=25.2
Q ss_pred HHHhccChhhhhhhhhhHHHHHHHH----HHHHhcCCcchhhHHHHHHHHHHHhhhhc
Q 026497 144 WCLMRAGPLYVSMFKPLAILFSTVM----GVIIFGDGLFLGSLVGAVIIVIGFYVVMW 197 (237)
Q Consensus 144 ~~l~~~~a~~~s~~~~l~Pv~a~ll----~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~ 197 (237)
..-++.+++..+.+..+.-+-..+. |++.-.-.......+..++.+.|+.+..+
T Consensus 344 l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~ 401 (491)
T PRK11010 344 LCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLV 401 (491)
T ss_pred HcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 3444456666666665444333333 33321111233344555555666655543
No 141
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=34.04 E-value=3.9e+02 Score=24.87 Aligned_cols=43 Identities=12% Similarity=0.190 Sum_probs=25.1
Q ss_pred hhhhhHHHHHHHHHHHH-hcCCcchhhHHHHHHHHHHHhhhhccc
Q 026497 156 MFKPLAILFSTVMGVII-FGDGLFLGSLVGAVIIVIGFYVVMWGK 199 (237)
Q Consensus 156 ~~~~l~Pv~a~ll~~l~-lgE~l~~~~~iG~~lIl~Gv~l~~~~~ 199 (237)
.+....|+++.+...++ .... ......|.++++.|+.+..+.+
T Consensus 393 ~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~y~~~~ 436 (473)
T TIGR00905 393 RKALIVGVIACVYSIWLLYAAG-LKYLLLGFILYAPGIIFYGRAR 436 (473)
T ss_pred chHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666655443 3332 2345678888888876555433
No 142
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=33.95 E-value=3.9e+02 Score=24.83 Aligned_cols=50 Identities=16% Similarity=0.281 Sum_probs=31.7
Q ss_pred hhhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhcccccccc
Q 026497 155 SMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAKEEN 204 (237)
Q Consensus 155 s~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~~~~~~~~ 204 (237)
+.++.-+-.=+.+-|.++-+-.....-+.|+++.+.++.+....++++++
T Consensus 342 aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~~~~~~ 391 (394)
T COG2814 342 AAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSARKDRR 391 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 34444444445555555555556677788999999998887666554443
No 143
>CHL00196 psbY photosystem II protein Y; Provisional
Probab=33.92 E-value=97 Score=18.60 Aligned_cols=18 Identities=11% Similarity=-0.302 Sum_probs=15.2
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 026497 59 GGFYLAAQAILISAWYIL 76 (237)
Q Consensus 59 G~ll~llaa~~~a~y~v~ 76 (237)
=.++-++.+.+|++|++.
T Consensus 7 iVl~Pil~A~~Wa~fNIg 24 (36)
T CHL00196 7 VIAAPVLAAASWALFNIG 24 (36)
T ss_pred HHHHHHHHHHHHHHHHhH
Confidence 356778899999999987
No 144
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=33.06 E-value=3.4e+02 Score=23.92 Aligned_cols=20 Identities=10% Similarity=-0.032 Sum_probs=10.8
Q ss_pred hhhhhhhhhhHHHHHHHHHH
Q 026497 151 PLYVSMFKPLAILFSTVMGV 170 (237)
Q Consensus 151 a~~~s~~~~l~Pv~a~ll~~ 170 (237)
....+++....++.+.+.+.
T Consensus 333 g~~~~~~~~~~~lg~~~~~~ 352 (394)
T PRK11652 333 GTAGALLGGLQNIGSGLAAL 352 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 34445555556665555554
No 145
>PLN02822 serine palmitoyltransferase
Probab=32.70 E-value=29 Score=32.81 Aligned_cols=49 Identities=16% Similarity=0.235 Sum_probs=35.2
Q ss_pred HHHhcCCcchhhHHHHHHHHHHHhhhhcccccccc----cccccC---CCCCcccc
Q 026497 170 VIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAKEEN----TIDDRG---TWSSELSS 218 (237)
Q Consensus 170 ~l~lgE~l~~~~~iG~~lIl~Gv~l~~~~~~~~~~----~~~~~~---~~~~~~~~ 218 (237)
.+++|.+.....++-.+|++..+++...++++.++ +++.|| .|.|||.-
T Consensus 27 ~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~l~ 82 (481)
T PLN02822 27 AVVFGVHIGGHLVVEGLLIVVIVFLLSQKSYKPPKRPLTEKEIDELCDEWTPEPLI 82 (481)
T ss_pred eeEeecCCCchhHHHHHHHHHHHHHHHcCcCCCCCCCCCHHHHHHHHhcCCCCCCC
Confidence 34788999999999999999999887755433221 223333 79999884
No 146
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=31.14 E-value=59 Score=26.40 Aligned_cols=14 Identities=21% Similarity=0.494 Sum_probs=6.3
Q ss_pred ccccccccCCCccc
Q 026497 217 SSEKVPLLQNSTED 230 (237)
Q Consensus 217 ~~~~~~~~~~~~~~ 230 (237)
+-|=.|+-++++||
T Consensus 138 ~~Em~pL~~ddede 151 (163)
T PF06679_consen 138 NVEMAPLEEDDEDE 151 (163)
T ss_pred cceecccCCCcccc
Confidence 34445664443333
No 147
>COG4789 EscV Type III secretory pathway, component EscV [Intracellular trafficking and secretion]
Probab=30.32 E-value=1.7e+02 Score=28.79 Aligned_cols=18 Identities=11% Similarity=0.104 Sum_probs=16.1
Q ss_pred cccccccCCCccccccCC
Q 026497 218 SEKVPLLQNSTEDTKCCP 235 (237)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~ 235 (237)
|.++|..++|+...-.||
T Consensus 341 ~g~~~~~~~q~~~~~tvP 358 (689)
T COG4789 341 DGAASLGAEQDVSAGTVP 358 (689)
T ss_pred Cccccccccccccccccc
Confidence 889999999999888887
No 148
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=29.38 E-value=4e+02 Score=23.51 Aligned_cols=34 Identities=15% Similarity=0.139 Sum_probs=15.7
Q ss_pred HHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhh
Q 026497 163 LFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVM 196 (237)
Q Consensus 163 v~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~ 196 (237)
+...+.|++.-.-..+...++++++.++++.+..
T Consensus 353 ~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 386 (399)
T PRK05122 353 ITGPLAGLVASWFGYPSIFLAAALAALLGLALTW 386 (399)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH
Confidence 3444555544322344444455555555554443
No 149
>PF06298 PsbY: Photosystem II protein Y (PsbY); InterPro: IPR009388 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbY found in PSII. In higher plants, two related PsbY proteins exist, PsbY-1 and PsbY-2, which appear to function as a heterodimer. In spinach and Arabidopsis, these two proteins arise from a single-copy nuclear gene that is processed in the chloroplast. By contrast, prokaryotic and organellar chromosomes encode a single PsbY protein, as found in cyanobacteria and red algae, indicating a duplication event in the evolution of higher plants []. PsbY has two low manganese-dependent activities: a catalase-like activity and an L-arginine metabolising activity that converts L-arginine into ornithine and urea []. In addition, a redox-active group is thought to be present in the protein. In cyanobacteria, PsbY deletion mutants have a slightly impaired PSII that is less capable of coping with low levels of calcium ions than the wild-type.; GO: 0030145 manganese ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0016021 integral to membrane
Probab=29.12 E-value=1.3e+02 Score=18.09 Aligned_cols=20 Identities=15% Similarity=-0.152 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 026497 59 GGFYLAAQAILISAWYILQA 78 (237)
Q Consensus 59 G~ll~llaa~~~a~y~v~~~ 78 (237)
=.+.-++.+.+|++|++...
T Consensus 7 iVl~Pil~A~gWa~fNIg~~ 26 (36)
T PF06298_consen 7 IVLLPILPAAGWALFNIGRA 26 (36)
T ss_pred HHHHHHHHHHHHHHHHhHHH
Confidence 35667888999999999733
No 150
>KOG1631 consensus Translocon-associated complex TRAP, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.90 E-value=58 Score=27.95 Aligned_cols=46 Identities=17% Similarity=0.203 Sum_probs=22.8
Q ss_pred hcCCcchhhHHHHHHHHHHHhhhhc----ccccccccccccCCCCCcccc
Q 026497 173 FGDGLFLGSLVGAVIIVIGFYVVMW----GKAKEENTIDDRGTWSSELSS 218 (237)
Q Consensus 173 lgE~l~~~~~iG~~lIl~Gv~l~~~----~~~~~~~~~~~~~~~~~~~~~ 218 (237)
=||++-+..++.++.++++++..+. .|+..++++.+++|.+-.+.|
T Consensus 181 ~GETvFL~~lligl~llllv~~~q~L~~~sKk~~~~~kVE~GTas~~~vd 230 (261)
T KOG1631|consen 181 SGETVFLYILLIGLSLLLLVLSQQFLSKLSKKTKKRRKVEVGTASKDAVD 230 (261)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccceEeecccCccccc
Confidence 3565555555555555555554432 233333344445566655554
No 151
>PF15202 Adipogenin: Adipogenin
Probab=28.87 E-value=88 Score=21.60 Aligned_cols=26 Identities=15% Similarity=0.205 Sum_probs=18.4
Q ss_pred cCCCCCccccccccccCCCccccccC
Q 026497 209 RGTWSSELSSEKVPLLQNSTEDTKCC 234 (237)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (237)
=||||.-|+.---..-..+.|++++|
T Consensus 55 wepwsk~pae~~~~~tl~~qE~~rpc 80 (81)
T PF15202_consen 55 WEPWSKGPAEFCWEETLHGQEEERPC 80 (81)
T ss_pred ccccccCchHhhhcccccCccccCCC
Confidence 36888888764444555677888998
No 152
>PRK02251 putative septation inhibitor protein; Reviewed
Probab=28.63 E-value=2.2e+02 Score=20.59 Aligned_cols=55 Identities=13% Similarity=0.172 Sum_probs=36.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhccChhhhhhhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhc
Q 026497 122 VGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMW 197 (237)
Q Consensus 122 ~~~~~llylgi~~t~la~~l~~~~l~~~~a~~~s~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~ 197 (237)
..|...+++|++..++.+..-+|.-+. -.| +.- +| .|...+|..+++.|+.+..+
T Consensus 31 P~W~~~~m~~lm~~Gl~WlvvyYl~~~-----------~~P-~~~------lG---~WN~~IGfg~~~~G~~mt~r 85 (87)
T PRK02251 31 PRWFVPLFVALMIIGLIWLVVYYLSNG-----------SLP-IPA------LG---AWNLVIGFGLIMAGFGMTTQ 85 (87)
T ss_pred CchHHHHHHHHHHHHHHHHHHHhhhCC-----------CcC-ccc------cc---chhHHHHHHHHHHHHHHHcc
Confidence 457877888888888888777766321 112 111 11 47888999999999887653
No 153
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=28.57 E-value=4e+02 Score=24.86 Aligned_cols=18 Identities=22% Similarity=0.163 Sum_probs=8.8
Q ss_pred CCcchhhHHHhHHhHHHH
Q 026497 11 SQAKSLGTIVSIAGAFVV 28 (237)
Q Consensus 11 s~~~~~Gi~la~~Gv~ll 28 (237)
..|-+..++++.+|++++
T Consensus 89 ~~Ri~~~~~l~~~g~l~v 106 (402)
T PF02487_consen 89 WIRILICVALSAAGMLLV 106 (402)
T ss_pred hHHHHHHHHHHHHHHhhe
Confidence 344444555555555444
No 154
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=28.31 E-value=84 Score=23.60 Aligned_cols=18 Identities=6% Similarity=0.532 Sum_probs=8.8
Q ss_pred hHHHHHHHH-HHHhhhhcc
Q 026497 181 SLVGAVIIV-IGFYVVMWG 198 (237)
Q Consensus 181 ~~iG~~lIl-~Gv~l~~~~ 198 (237)
.++|.+|++ ++.-+..|+
T Consensus 5 ~il~llLll~l~asl~~wr 23 (107)
T PF15330_consen 5 GILALLLLLSLAASLLAWR 23 (107)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 355665544 444444444
No 155
>COG2034 Predicted membrane protein [Function unknown]
Probab=28.20 E-value=67 Score=23.17 Aligned_cols=47 Identities=13% Similarity=0.309 Sum_probs=28.0
Q ss_pred hhhHHHHHHHHHHHhhhhcccccccccccccCCCCCccccccccccCCCc
Q 026497 179 LGSLVGAVIIVIGFYVVMWGKAKEENTIDDRGTWSSELSSEKVPLLQNST 228 (237)
Q Consensus 179 ~~~~iG~~lIl~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (237)
...++|..++..|+.+..+.+..++. +++| +.+---.---|--++|+
T Consensus 13 ~li~iGf~LifLGi~l~~~~~~~~~~--~~~E-~gGvVmIGPIPIvFGss 59 (85)
T COG2034 13 ILIFIGFLLIFLGIVLPAFSPFAESG--SSVE-YGGVVMIGPIPIVFGSS 59 (85)
T ss_pred HHHHHHHHHHHHHHHHHhcCCccccC--Cccc-cceEEEEcCccEEEcCC
Confidence 34578999999999888777665444 2223 33333334445555554
No 156
>PLN02351 cytochromes b561 family protein
Probab=27.88 E-value=4e+02 Score=23.07 Aligned_cols=17 Identities=12% Similarity=0.149 Sum_probs=12.6
Q ss_pred hhHHHHHHHHHHHhhhh
Q 026497 180 GSLVGAVIIVIGFYVVM 196 (237)
Q Consensus 180 ~~~iG~~lIl~Gv~l~~ 196 (237)
...+|.++++.|.+++.
T Consensus 201 vN~~Glliv~fG~~Vv~ 217 (242)
T PLN02351 201 VNGLGLGLALLSGIVIL 217 (242)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35789999999865543
No 157
>COG3366 Uncharacterized protein conserved in archaea [Function unknown]
Probab=27.66 E-value=1.1e+02 Score=27.38 Aligned_cols=58 Identities=12% Similarity=0.039 Sum_probs=37.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccChhhhhhhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhh
Q 026497 123 GLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVM 196 (237)
Q Consensus 123 ~~~~llylgi~~t~la~~l~~~~l~~~~a~~~s~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~ 196 (237)
.......+.-|++.+.+. +.+..|+...++|+.+-..-.......|+.-.+.|+.+..
T Consensus 87 Evi~~slln~FP~~v~~~----------------~~f~~Pv~lpiLG~~~GliYv~i~~~va~~~tlig~l~g~ 144 (311)
T COG3366 87 EVIVASLLNAFPTGVRHA----------------FTFYAPVALPILGLELGLIYVGIRVLVALLKTLIGVLYGK 144 (311)
T ss_pred HHHHHHHHHhhHHHHHHH----------------HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445556666553 4456788888888766666667777788888888875433
No 158
>PRK09528 lacY galactoside permease; Reviewed
Probab=27.40 E-value=4.5e+02 Score=23.51 Aligned_cols=10 Identities=10% Similarity=0.219 Sum_probs=3.8
Q ss_pred cccccccccc
Q 026497 200 AKEENTIDDR 209 (237)
Q Consensus 200 ~~~~~~~~~~ 209 (237)
++++.+-|||
T Consensus 406 ~~~~~~~~~~ 415 (420)
T PRK09528 406 DRELSLLRRQ 415 (420)
T ss_pred CchhhHHHhh
Confidence 3333333333
No 159
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=27.36 E-value=2.5e+02 Score=20.57 Aligned_cols=14 Identities=7% Similarity=0.031 Sum_probs=6.7
Q ss_pred hHHHHHHHHHHHhh
Q 026497 181 SLVGAVIIVIGFYV 194 (237)
Q Consensus 181 ~~iG~~lIl~Gv~l 194 (237)
.+.|++-=+.+-.+
T Consensus 64 ~~aG~laGlAaTGL 77 (93)
T PF06946_consen 64 AWAGGLAGLAATGL 77 (93)
T ss_pred HHHHHHhhhhhhhH
Confidence 35566444444444
No 160
>COG2095 MarC Multiple antibiotic transporter [Intracellular trafficking and secretion]
Probab=27.35 E-value=2.4e+02 Score=23.69 Aligned_cols=28 Identities=14% Similarity=0.310 Sum_probs=16.8
Q ss_pred HhcCCcchhhHHHHHHHH-HHHhhhhccc
Q 026497 172 IFGDGLFLGSLVGAVIIV-IGFYVVMWGK 199 (237)
Q Consensus 172 ~lgE~l~~~~~iG~~lIl-~Gv~l~~~~~ 199 (237)
++|=+++-.++.|+++.+ .|+-+..-+.
T Consensus 67 ~fgIsi~a~rIAGGilLf~ia~~ml~~~~ 95 (203)
T COG2095 67 FFGISIDAFRIAGGILLFLIALRMLFGPT 95 (203)
T ss_pred HhCCchhHHHHhhhHHHHHHHHHHhcCCc
Confidence 356677777777666554 6665544433
No 161
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=27.23 E-value=4.1e+02 Score=24.42 Aligned_cols=40 Identities=13% Similarity=0.176 Sum_probs=22.1
Q ss_pred hhhHHHHHHHHHHHHh-----cCCcchhhHHHHHHHHHHHhhhhcc
Q 026497 158 KPLAILFSTVMGVIIF-----GDGLFLGSLVGAVIIVIGFYVVMWG 198 (237)
Q Consensus 158 ~~l~Pv~a~ll~~l~l-----gE~l~~~~~iG~~lIl~Gv~l~~~~ 198 (237)
..+.|+++.+.+.+++ .++.. ..+.+.++++.|+.+....
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~y~~~ 434 (445)
T PRK11357 390 FGLMTTLAIASSLILVASTFVWAPIP-GLICAVIVIATGLPAYAFW 434 (445)
T ss_pred chHHHHHHHHHHHHHHHHHHHcCcHH-HHHHHHHHHHHhhhHHhhe
Confidence 4567777777666553 44322 1234666677776544333
No 162
>PF07214 DUF1418: Protein of unknown function (DUF1418); InterPro: IPR010815 This family consists of several hypothetical Enterobacterial proteins of around 100 residues in length. Members of this family are often described as YbjC. In Escherichia coli the ybjC gene is located downstream of nfsA (which encodes the major oxygen-insensitive nitroreductase). It is thought that nfsA and ybjC form an operon an its promoter is a class I SoxS-dependent promoter []. The function of this family is unknown.
Probab=27.19 E-value=1.5e+02 Score=21.82 Aligned_cols=8 Identities=25% Similarity=0.625 Sum_probs=4.3
Q ss_pred HHHHHHHH
Q 026497 182 LVGAVIIV 189 (237)
Q Consensus 182 ~iG~~lIl 189 (237)
++|.++.+
T Consensus 50 f~Gi~lMl 57 (96)
T PF07214_consen 50 FVGIGLML 57 (96)
T ss_pred HHHHHHHH
Confidence 44555555
No 163
>PF11381 DUF3185: Protein of unknown function (DUF3185); InterPro: IPR021521 Some members in this bacterial family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=26.88 E-value=1.5e+02 Score=19.81 Aligned_cols=17 Identities=24% Similarity=0.536 Sum_probs=14.0
Q ss_pred chhhHHHhHHhHHHHHH
Q 026497 14 KSLGTIVSIAGAFVVTF 30 (237)
Q Consensus 14 ~~~Gi~la~~Gv~ll~~ 30 (237)
|++|+++-++|++++.+
T Consensus 1 kiigi~Llv~GivLl~~ 17 (59)
T PF11381_consen 1 KIIGIALLVGGIVLLYF 17 (59)
T ss_pred CeeeehHHHHHHHHHHh
Confidence 57889999999988863
No 164
>PF15102 TMEM154: TMEM154 protein family
Probab=26.87 E-value=71 Score=25.44 Aligned_cols=14 Identities=14% Similarity=0.351 Sum_probs=6.4
Q ss_pred HHHHHHHhhhhccc
Q 026497 186 VIIVIGFYVVMWGK 199 (237)
Q Consensus 186 ~lIl~Gv~l~~~~~ 199 (237)
+|+++.|+++.+.|
T Consensus 70 lLLl~vV~lv~~~k 83 (146)
T PF15102_consen 70 LLLLSVVCLVIYYK 83 (146)
T ss_pred HHHHHHHHheeEEe
Confidence 34444455554443
No 165
>PRK10489 enterobactin exporter EntS; Provisional
Probab=26.43 E-value=4.7e+02 Score=23.35 Aligned_cols=19 Identities=11% Similarity=-0.040 Sum_probs=9.9
Q ss_pred cchhhHHHHHHHHHHHhhh
Q 026497 177 LFLGSLVGAVIIVIGFYVV 195 (237)
Q Consensus 177 l~~~~~iG~~lIl~Gv~l~ 195 (237)
..+..++++++.+..+++.
T Consensus 175 ~~~~~~~~~~~~~~~~~~~ 193 (417)
T PRK10489 175 VAWNYGLAAAGTFITLLPL 193 (417)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 4455556555555554443
No 166
>PF12832 MFS_1_like: MFS_1 like family
Probab=26.14 E-value=2.2e+02 Score=19.56 Aligned_cols=47 Identities=15% Similarity=0.197 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccChhhhhhhhhhHHHHHHHHHH
Q 026497 124 LFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGV 170 (237)
Q Consensus 124 ~~~llylgi~~t~la~~l~~~~l~~~~a~~~s~~~~l~Pv~a~ll~~ 170 (237)
+...+|-+..++..-|.-...-..-+++.++++...+.|....+..-
T Consensus 7 ~~yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~p 53 (77)
T PF12832_consen 7 AFYFFYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPP 53 (77)
T ss_pred HHHHHHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555565555555566677777777777766655544
No 167
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=25.88 E-value=5.2e+02 Score=23.72 Aligned_cols=18 Identities=11% Similarity=-0.092 Sum_probs=12.5
Q ss_pred hhhhhHHHHHHHHHHHHh
Q 026497 156 MFKPLAILFSTVMGVIIF 173 (237)
Q Consensus 156 ~~~~l~Pv~a~ll~~l~l 173 (237)
.+....|+.+++...+++
T Consensus 385 p~~~~~~~~~~~~~~~~~ 402 (445)
T PRK10644 385 PAYLAVTLIAFVYCIWAV 402 (445)
T ss_pred cchhHHHHHHHHHHHHHH
Confidence 455678888887776654
No 168
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=25.71 E-value=5.2e+02 Score=23.66 Aligned_cols=13 Identities=0% Similarity=-0.230 Sum_probs=6.3
Q ss_pred HHHHhccChhhhh
Q 026497 143 LWCLMRAGPLYVS 155 (237)
Q Consensus 143 ~~~l~~~~a~~~s 155 (237)
.+..+..++...+
T Consensus 372 ~~~~~~~p~~~~g 384 (467)
T PRK09556 372 VAAVGFVPKKAIG 384 (467)
T ss_pred HHHHhhcchhhHH
Confidence 3444555554433
No 169
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=25.07 E-value=1e+02 Score=29.12 Aligned_cols=44 Identities=16% Similarity=0.326 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHHhcCCcchhh-HHHHHHHHHHHhhhhcccccccc
Q 026497 160 LAILFSTVMGVIIFGDGLFLGS-LVGAVIIVIGFYVVMWGKAKEEN 204 (237)
Q Consensus 160 l~Pv~a~ll~~l~lgE~l~~~~-~iG~~lIl~Gv~l~~~~~~~~~~ 204 (237)
+.|.++.+ +++..+-...... .-|++.+++|+++..+.|.++++
T Consensus 168 l~~~~~~l-a~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs 212 (448)
T COG2271 168 LAPLVALL-AFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQS 212 (448)
T ss_pred hHHHHHHH-HHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 55655555 6666554333333 34777778898887776665444
No 170
>PF11118 DUF2627: Protein of unknown function (DUF2627); InterPro: IPR020138 This entry represents uncharacterised membrane proteins with no known function.
Probab=24.41 E-value=1.5e+02 Score=20.87 Aligned_cols=15 Identities=27% Similarity=0.496 Sum_probs=9.5
Q ss_pred hHHHHHHHHHHHhhh
Q 026497 181 SLVGAVIIVIGFYVV 195 (237)
Q Consensus 181 ~~iG~~lIl~Gv~l~ 195 (237)
.+.|.++...|+...
T Consensus 43 fl~G~~lf~~G~~Fi 57 (77)
T PF11118_consen 43 FLAGLLLFAIGVGFI 57 (77)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345667777777654
No 171
>TIGR00966 3a0501s07 protein-export membrane protein SecF. This bacterial protein is always found with the homologous protein-export membrane protein SecD. In numerous lineages, this protein occurs as a SecDF fusion protein.
Probab=23.86 E-value=4.2e+02 Score=22.58 Aligned_cols=43 Identities=16% Similarity=0.159 Sum_probs=28.1
Q ss_pred ChhhhhhhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHh
Q 026497 150 GPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFY 193 (237)
Q Consensus 150 ~a~~~s~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~ 193 (237)
..+..........+..++....++|-+++...+.|.++ +.|+.
T Consensus 122 r~~l~v~~~ip~~l~~~~~~l~~~g~~ln~~sl~gli~-~iGi~ 164 (246)
T TIGR00966 122 RFALGAIVALVHDVIITVGVYSLFGIEVNLTTVAALLT-IIGYS 164 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCcccHHHHHHHHH-HHHHh
Confidence 34444455555556667777778899999887776664 45543
No 172
>COG0682 Lgt Prolipoprotein diacylglyceryltransferase [Cell envelope biogenesis, outer membrane]
Probab=23.40 E-value=2.7e+02 Score=24.78 Aligned_cols=79 Identities=13% Similarity=0.224 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc--c-ChhhhhhhhhhHHHHHHHHHHHHhcCC-cc------hhhHHHHHHHHHHHhhhh
Q 026497 127 IAYSAVIGAAFLTTLLLWCLMR--A-GPLYVSMFKPLAILFSTVMGVIIFGDG-LF------LGSLVGAVIIVIGFYVVM 196 (237)
Q Consensus 127 llylgi~~t~la~~l~~~~l~~--~-~a~~~s~~~~l~Pv~a~ll~~l~lgE~-l~------~~~~iG~~lIl~Gv~l~~ 196 (237)
-+|=+++-..+-+.++.+.-++ . +-...+.+...--++-.+.-.+=-.+. +. ..|++...+|++|+.+..
T Consensus 192 qLYE~~~~~iv~~iil~~~~~~~~~~~G~v~~~y~~~Yg~~Rf~iE~~R~~~~~~~~~~~~~mgqilSi~mIl~Gi~~~~ 271 (287)
T COG0682 192 QLYESFLEGIVFFIILFLFRRKPLLKSGFVFGLYLIGYGLFRFFIEFFREPDLMLGGLIRILMGQILSIPMILLGLWLII 271 (287)
T ss_pred HHHHHHHHHHHhhhhHHHHHhcccCCCeeeehhHHHHHHHHHHhhhhhhcCchhhhhHHHHhhhHHHHHHHHHHHHHHHH
Confidence 4666666666666666666542 1 122333333333333332222111111 11 268999999999998877
Q ss_pred ccccccccc
Q 026497 197 WGKAKEENT 205 (237)
Q Consensus 197 ~~~~~~~~~ 205 (237)
+.+++.+++
T Consensus 272 ~~~~k~~~~ 280 (287)
T COG0682 272 YLYKKAKKK 280 (287)
T ss_pred HHHHhccCC
Confidence 665543333
No 173
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=22.97 E-value=6.1e+02 Score=23.46 Aligned_cols=13 Identities=38% Similarity=0.567 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHhh
Q 026497 182 LVGAVIIVIGFYV 194 (237)
Q Consensus 182 ~iG~~lIl~Gv~l 194 (237)
+.|+++++.++..
T Consensus 417 ~~~~~~~i~~~~~ 429 (476)
T PLN00028 417 LMGVMIIACTLPV 429 (476)
T ss_pred HHHHHHHHHHHHH
Confidence 3344555544433
No 174
>PRK13240 pbsY photosystem II protein Y; Reviewed
Probab=22.91 E-value=1.8e+02 Score=17.87 Aligned_cols=18 Identities=11% Similarity=-0.258 Sum_probs=15.0
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 026497 59 GGFYLAAQAILISAWYIL 76 (237)
Q Consensus 59 G~ll~llaa~~~a~y~v~ 76 (237)
=.++-++.+.+|++|++.
T Consensus 7 iVl~Pil~A~~Wa~fNIg 24 (40)
T PRK13240 7 IVLAPILAAAGWAVFNIG 24 (40)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 356678899999999987
No 175
>PRK10489 enterobactin exporter EntS; Provisional
Probab=22.55 E-value=5.6e+02 Score=22.85 Aligned_cols=37 Identities=14% Similarity=0.151 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHhcCC-cchhhHHHHHHHHHHHhhhhc
Q 026497 161 AILFSTVMGVIIFGDG-LFLGSLVGAVIIVIGFYVVMW 197 (237)
Q Consensus 161 ~Pv~a~ll~~l~lgE~-l~~~~~iG~~lIl~Gv~l~~~ 197 (237)
.++-..+.|++.-.-. .....+.|++..+.++.+...
T Consensus 361 ~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 398 (417)
T PRK10489 361 DAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLV 398 (417)
T ss_pred HhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHh
Confidence 4444555554442211 222334455555555554443
No 176
>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine. Transport is dependent on glucose and a proton gradient [].
Probab=22.50 E-value=69 Score=28.81 Aligned_cols=129 Identities=15% Similarity=0.158 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH-HHhcc--c--c--ccc--cccchhhHHHH--HHHHH
Q 026497 64 AAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFS-LTVVT--E--L--SAW--KLRLDVGLFAI--AYSAV 132 (237)
Q Consensus 64 llaa~~~a~y~v~~~~~~~~~~~~~~~t~~~~~~g~l~~~~~~-~~~~~--~--~--~~~--~~~~~~~~~~l--lylgi 132 (237)
+++.+||+-+-..+|-.-|+.. ..+.+.|=+.++-++..++. +.++. + + ..+ +.. +..|-++ ...|=
T Consensus 2 ~itmlcwGSW~nt~kL~~r~gR-~~qh~Y~DYsig~lL~All~A~TlGs~G~~~~~g~~Fl~qL~-Q~n~~sv~~A~aGG 79 (336)
T PF07168_consen 2 VITMLCWGSWPNTQKLAERRGR-LPQHFYWDYSIGNLLAALLIAFTLGSIGESTPEGPNFLTQLS-QANWPSVLFAMAGG 79 (336)
T ss_pred eeehhhhcChHHHHHHHHhcCC-ccceehhHHHHHHHHHHHHHHHhccccCCCCCCCccHHHHHh-cCChHHHHHHHHhh
Confidence 5677888888777776655432 12345555555555444333 22221 0 0 111 111 1123332 22333
Q ss_pred HHHHHHHHHHHHHHhccChhhhhhhhh-hHHHHHHHHHHHHhcCCcc--hhhHHHHHHHHHHHhhh
Q 026497 133 IGAAFLTTLLLWCLMRAGPLYVSMFKP-LAILFSTVMGVIIFGDGLF--LGSLVGAVIIVIGFYVV 195 (237)
Q Consensus 133 ~~t~la~~l~~~~l~~~~a~~~s~~~~-l~Pv~a~ll~~l~lgE~l~--~~~~iG~~lIl~Gv~l~ 195 (237)
+.--++-.+..+++...|-+.+-++.. +.-|.++.+-++ +..+.+ ...+.|.+++++.+.+.
T Consensus 80 vvfnlgNillq~aia~aGmSVafpvg~glalVlGv~~NYf-ld~~~n~a~iLF~GV~cf~iAI~lg 144 (336)
T PF07168_consen 80 VVFNLGNILLQAAIAFAGMSVAFPVGIGLALVLGVTLNYF-LDPKINRAEILFPGVACFLIAIILG 144 (336)
T ss_pred HhhhhHHHHHHHHHHHhcceeeeeeecceEEEEeeeeeee-ccCCCCCceEEEccHHHHHHHHHHH
Confidence 344556666677777666554332221 111334555553 345554 24455777877777654
No 177
>PRK11562 nitrite transporter NirC; Provisional
Probab=22.02 E-value=46 Score=29.18 Aligned_cols=23 Identities=22% Similarity=0.137 Sum_probs=13.5
Q ss_pred hhhHHHHHHHHHHHhhhhccccc
Q 026497 179 LGSLVGAVIIVIGFYVVMWGKAK 201 (237)
Q Consensus 179 ~~~~iG~~lIl~Gv~l~~~~~~~ 201 (237)
...++|+.+.+...|....++++
T Consensus 231 LGNivGG~v~vg~~y~~~~~~~~ 253 (268)
T PRK11562 231 LGNTLSGAVFMGLGYWYATPKAN 253 (268)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCc
Confidence 44567777666666655544443
No 178
>TIGR02004 PTS-IIBC-malX PTS system, maltose and glucose-specific IIBC component. This model represents a family of PTS enzyme II fused B and C components including and most closely related to the MalX maltose and glucose-specific transporter of E. coli. A pair of paralogous genes from E. coli strain CFT073 score between trusted and noise and may have diverged sufficiently to have an altered substrate specificity.
Probab=21.87 E-value=5.3e+02 Score=24.84 Aligned_cols=36 Identities=8% Similarity=0.065 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccChhhhhhhhhhH
Q 026497 124 LFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLA 161 (237)
Q Consensus 124 ~~~llylgi~~t~la~~l~~~~l~~~~a~~~s~~~~l~ 161 (237)
++.+++. ++ ++++|.+-...--+.|.+..+.+-++.
T Consensus 342 ~Ly~vha-~l-~G~~~~~~~~~~v~ig~~s~glid~~~ 377 (517)
T TIGR02004 342 LLYLVHA-IL-TGLGFMVMALLGVVIGNTDGNLIDFLV 377 (517)
T ss_pred HHHHHHH-HH-HHHHHHHHHHhCceeecCCCchHHHHH
Confidence 4445553 32 556666655554445554444554444
No 179
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=21.35 E-value=3.1e+02 Score=22.03 Aligned_cols=24 Identities=13% Similarity=0.386 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHhhhhccccccccc
Q 026497 182 LVGAVIIVIGFYVVMWGKAKEENT 205 (237)
Q Consensus 182 ~iG~~lIl~Gv~l~~~~~~~~~~~ 205 (237)
.+|++++..|++....+++....+
T Consensus 47 Alg~vL~~~g~~~~~~~~~~~~~~ 70 (191)
T PF04156_consen 47 ALGVVLLSLGLLCLLSKRPVQSVR 70 (191)
T ss_pred HHHHHHHHHHHHHHHHccccccch
Confidence 568888888887766655443333
No 180
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=21.09 E-value=6.5e+02 Score=23.08 Aligned_cols=41 Identities=10% Similarity=0.120 Sum_probs=20.6
Q ss_pred hhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhcc
Q 026497 156 MFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWG 198 (237)
Q Consensus 156 ~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~~ 198 (237)
.+....+..+.++..+.+... ++ ..++..+.+.++.+..+.
T Consensus 384 ~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~ 424 (435)
T PRK10435 384 FVSLICSVLGCVFCFIALMGA-SS-FELAGTFIVSLIILMFYA 424 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-hH-HHHHHHHHHHHHHHHHHH
Confidence 344567777777776665532 33 344444444443333343
No 181
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=21.03 E-value=80 Score=26.13 Aligned_cols=43 Identities=14% Similarity=0.313 Sum_probs=34.9
Q ss_pred hhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhcc
Q 026497 156 MFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWG 198 (237)
Q Consensus 156 ~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~~ 198 (237)
.+....|++.++.++...+++.+..+++..+++..|+....+.
T Consensus 9 ~~~s~~l~~v~l~~~~~~~~~~~~~~i~~~~l~~~g~l~~~ls 51 (222)
T TIGR00803 9 IFKQNNLVLIALGNLLAAGKQVTQLKILSTALMTLGSLVASLG 51 (222)
T ss_pred HHHhcchHHHHHhcccccceeeehHHHHHHHHHHHHHHHhHhh
Confidence 3445678888999999999999999999999999998764443
No 182
>PF01350 Flavi_NS4A: Flavivirus non-structural protein NS4A; InterPro: IPR000404 Flaviviruses encode a single polyprotein. This is cleaved into three structural and seven non-structural proteins. The NS4A protein is small and poorly conserved among the Flaviviruses. NS4A contains multiple hydrophobic potential membrane spanning regions []. NS4A has only been found in cells infected by Kunjin virus [].; GO: 0016032 viral reproduction, 0016070 RNA metabolic process, 0044423 virion part
Probab=20.93 E-value=4.3e+02 Score=20.98 Aligned_cols=63 Identities=13% Similarity=0.216 Sum_probs=37.2
Q ss_pred HHHHHHHHhccChhhhhhhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhccccccccc
Q 026497 139 TTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAKEENT 205 (237)
Q Consensus 139 ~~l~~~~l~~~~a~~~s~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~~~~~~~~~ 205 (237)
-.+..+.+++.+.+|.++-....-+.+ ...+.|+ +++.++.|..++..=+.++..+....++|
T Consensus 62 ~G~~~~lm~~kgi~rm~lG~~vm~~~~---~llw~gg-v~~~~IAg~~lv~filmvVLiPEpg~QRS 124 (144)
T PF01350_consen 62 LGVFWFLMRRKGIGRMSLGMLVMAVAG---YLLWMGG-VPPGQIAGVLLVFFILMVVLIPEPGKQRS 124 (144)
T ss_pred HHHHHhhhcCCCcchhhHHHHHHHHHH---HHHHhcC-CcHHHhHHHHHHHHHHHHhcccCCCCcCC
Confidence 334445677778887776553332222 2223344 67888999988888766666664433333
No 183
>PRK09579 multidrug efflux protein; Reviewed
Probab=20.76 E-value=4.8e+02 Score=27.37 Aligned_cols=31 Identities=13% Similarity=0.282 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhcCCcchhhHHHHHHHHHHHhh
Q 026497 163 LFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYV 194 (237)
Q Consensus 163 v~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l 194 (237)
+.+++++.++.|.+++....+|+ ++++|+.+
T Consensus 882 ~~G~~~~L~i~~~~l~~~s~~G~-i~L~GivV 912 (1017)
T PRK09579 882 ICGALIPLFLGVSSMNIYTQVGL-VTLIGLIS 912 (1017)
T ss_pred HHHHHHHHHHhCCCccHHHHHHH-HHHHHHHH
Confidence 56788888889999999988885 46677755
No 184
>PF01618 MotA_ExbB: MotA/TolQ/ExbB proton channel family MotA family only; InterPro: IPR002898 This family groups together integral membrane proteins that appear to be involved in translocation of proteins across a membrane. These proteins are probably proton channels. MotA is an essential component of the flagellar motor that uses a proton gradient to generate rotational motion in the flagellar []. ExbB is part of the TonB-dependent transduction complex. The TonB complex uses the proton gradient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane.; GO: 0008565 protein transporter activity, 0006810 transport, 0016020 membrane
Probab=20.57 E-value=2.5e+02 Score=21.53 Aligned_cols=24 Identities=13% Similarity=0.184 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCh
Q 026497 128 AYSAVIGAAFLTTLLLWCLMRAGP 151 (237)
Q Consensus 128 lylgi~~t~la~~l~~~~l~~~~a 151 (237)
-++|+++|+++...-+..+...+.
T Consensus 66 P~lGLlGTv~Gmi~~f~~l~~~~~ 89 (139)
T PF01618_consen 66 PLLGLLGTVIGMIEAFQALAETGS 89 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccC
Confidence 346888899988888887776554
No 185
>COG3247 HdeD Uncharacterized conserved protein [Function unknown]
Probab=20.51 E-value=5e+02 Score=21.50 Aligned_cols=61 Identities=18% Similarity=0.306 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHhccChhhhhhhhhhHHHHHHHHHHHHhcCCcc----hhhHHHHHHHHHHHhhhh
Q 026497 133 IGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLF----LGSLVGAVIIVIGFYVVM 196 (237)
Q Consensus 133 ~~t~la~~l~~~~l~~~~a~~~s~~~~l~Pv~a~ll~~l~lgE~l~----~~~~iG~~lIl~Gv~l~~ 196 (237)
..+++....-..-.+..+ ---...+.-+++.++|++++.+|.. ...++|.-+++.|.....
T Consensus 112 i~~GI~ri~~~~~~~~~~---G~~w~ii~Gvl~ii~g~ill~~P~~~~~~l~~llGI~li~~G~~~i~ 176 (185)
T COG3247 112 IASGILRIVVAFRLRSLP---GWWWMIISGVLGIIAGLILLFNPVASAWILGLLLGIELIFQGIALIA 176 (185)
T ss_pred HHHHHHHHHHHHHccccC---CcHHHHHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444333 2333555668888889888888654 345567777777765543
No 186
>PRK10110 bifunctional PTS system maltose and glucose-specific transporter subunits IICB; Provisional
Probab=20.46 E-value=6.1e+02 Score=24.53 Aligned_cols=64 Identities=11% Similarity=0.085 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccChhhhhhhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhh
Q 026497 124 LFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVM 196 (237)
Q Consensus 124 ~~~llylgi~~t~la~~l~~~~l~~~~a~~~s~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~ 196 (237)
++.+++. ++ ++++|.+-...--+.|.+..+.+-++.. ++ .-+++-+|..++-..++...+|...
T Consensus 351 ~L~~vha-~l-~g~~~~~~~~l~v~~g~~~~g~id~i~~------~~-~~~~~~~~~~~~~~g~~~~~iyy~v 414 (530)
T PRK10110 351 VLYVIHA-LL-TGLGFTVMSVLGVTIGNTDGNIIDFVVF------GI-LHGLSTKWYMVPVVAAIWFVVYYVI 414 (530)
T ss_pred HHHHHHH-HH-HHHHHHHHHHhCceeccCCCchHHHHHh------cc-ccccccCchhHHHHHHHHHHHHHHH
Confidence 4445553 32 4566655554444445443333333322 11 1123334555555555556666553
No 187
>COG3329 Predicted permease [General function prediction only]
Probab=20.07 E-value=4.3e+02 Score=23.99 Aligned_cols=15 Identities=27% Similarity=0.193 Sum_probs=8.1
Q ss_pred cccccccCCCccccc
Q 026497 218 SEKVPLLQNSTEDTK 232 (237)
Q Consensus 218 ~~~~~~~~~~~~~~~ 232 (237)
+.+.-+=.|++||.|
T Consensus 190 sr~~~~~~~~~ed~~ 204 (372)
T COG3329 190 SRQEYLSPQWGEDNR 204 (372)
T ss_pred hhhhhcccccCcccc
Confidence 334445556666655
Done!