Query 026497
Match_columns 237
No_of_seqs 191 out of 1308
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 14:59:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026497.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026497hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 99.3 2E-12 6.9E-17 100.9 7.5 70 130-199 35-105 (137)
2 3b5d_A Multidrug transporter E 99.0 3.1E-09 1.1E-13 79.7 9.2 69 130-198 35-104 (110)
3 3b5d_A Multidrug transporter E 85.7 0.17 6E-06 37.0 0.3 28 2-29 75-102 (110)
4 2i68_A Protein EMRE; transmemb 81.0 0.35 1.2E-05 36.9 0.3 28 3-30 76-103 (137)
5 3l1l_A Arginine/agmatine antip 64.8 19 0.00066 31.4 7.7 44 157-200 386-429 (445)
6 2zxe_G FXYD10, phospholemman-l 58.6 6.2 0.00021 26.6 2.4 27 181-207 24-50 (74)
7 2jp3_A FXYD domain-containing 54.0 7 0.00024 25.8 2.0 27 181-207 22-48 (67)
8 4aps_A DI-OR tripeptide H+ sym 46.9 1.4E+02 0.0048 25.7 11.3 13 140-152 406-418 (491)
9 1pw4_A Glycerol-3-phosphate tr 44.2 1.4E+02 0.0049 25.1 13.9 23 130-152 356-378 (451)
10 2l2t_A Receptor tyrosine-prote 37.3 24 0.00081 21.3 2.4 7 192-198 30-36 (44)
11 2jo1_A Phospholemman; FXYD1, N 32.0 30 0.001 23.1 2.4 19 181-199 21-39 (72)
12 4dx5_A Acriflavine resistance 31.4 1.2E+02 0.0041 30.1 7.8 51 139-189 885-935 (1057)
13 4aps_A DI-OR tripeptide H+ sym 20.2 4E+02 0.014 22.6 15.5 19 65-83 62-80 (491)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=99.34 E-value=2e-12 Score=100.92 Aligned_cols=70 Identities=17% Similarity=0.189 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHHhccChhhhhhh-hhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhccc
Q 026497 130 SAVIGAAFLTTLLLWCLMRAGPLYVSMF-KPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGK 199 (237)
Q Consensus 130 lgi~~t~la~~l~~~~l~~~~a~~~s~~-~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~~~ 199 (237)
+++++++++|++|++++++.+++++..+ ..+.|++++++|++++||++++.+++|+++|+.|+++..+.+
T Consensus 35 l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 4678899999999999999999999998 899999999999999999999999999999999999887654
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.96 E-value=3.1e-09 Score=79.70 Aligned_cols=69 Identities=17% Similarity=0.191 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHHHHhccChhhhhhh-hhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhcc
Q 026497 130 SAVIGAAFLTTLLLWCLMRAGPLYVSMF-KPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWG 198 (237)
Q Consensus 130 lgi~~t~la~~l~~~~l~~~~a~~~s~~-~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~~ 198 (237)
.++++.+++|.+|.+++|+.+.+.+..+ ..+.|++++++|++++||++++.+++|.++|+.|+++....
T Consensus 35 ~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 4667889999999999999999999888 79999999999999999999999999999999999987654
No 3
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=85.71 E-value=0.17 Score=36.97 Aligned_cols=28 Identities=11% Similarity=0.209 Sum_probs=25.5
Q ss_pred ccceeeccCCCcchhhHHHhHHhHHHHH
Q 026497 2 EKLKWRSKSSQAKSLGTIVSIAGAFVVT 29 (237)
Q Consensus 2 e~~~lrer~s~~~~~Gi~la~~Gv~ll~ 29 (237)
..+++||+++..|++|+.+-++|++++.
T Consensus 75 ~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~ 102 (110)
T 3b5d_A 75 SWGFFGQRLDLPAIIGMMLICAGVLIIN 102 (110)
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 3578999999999999999999998876
No 4
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=80.95 E-value=0.35 Score=36.93 Aligned_cols=28 Identities=11% Similarity=0.230 Sum_probs=19.7
Q ss_pred cceeeccCCCcchhhHHHhHHhHHHHHH
Q 026497 3 KLKWRSKSSQAKSLGTIVSIAGAFVVTF 30 (237)
Q Consensus 3 ~~~lrer~s~~~~~Gi~la~~Gv~ll~~ 30 (237)
.++++|+++..+++|+++-++|++++..
T Consensus 76 ~l~lgE~ls~~~~~Gi~LIi~GV~ll~~ 103 (137)
T 2i68_A 76 WGFFGQRLDLPAIIGMMLICAGVLIINL 103 (137)
T ss_dssp HHHHC------CHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 5789999999999999999999998864
No 5
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=64.85 E-value=19 Score=31.41 Aligned_cols=44 Identities=2% Similarity=-0.195 Sum_probs=24.4
Q ss_pred hhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhcccc
Q 026497 157 FKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKA 200 (237)
Q Consensus 157 ~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl~Gv~l~~~~~~ 200 (237)
.....|+++.+...+.+-..-......|.++++.|+.+....++
T Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~ 429 (445)
T 3l1l_A 386 AYLAVTTIAFLYCIWAVVGSGAKEVMWSFVTLMVITAMYALNYN 429 (445)
T ss_dssp TTHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44566666666555443222223445677778888766554433
No 6
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=58.62 E-value=6.2 Score=26.58 Aligned_cols=27 Identities=30% Similarity=0.487 Sum_probs=14.5
Q ss_pred hHHHHHHHHHHHhhhhccccccccccc
Q 026497 181 SLVGAVIIVIGFYVVMWGKAKEENTID 207 (237)
Q Consensus 181 ~~iG~~lIl~Gv~l~~~~~~~~~~~~~ 207 (237)
.+++++|.++|+++...+|=+.+..+|
T Consensus 24 LifA~vLfi~GI~iilS~kcrCk~~qk 50 (74)
T 2zxe_G 24 LIVAAVLCVIGIIILLAGKCRCKFNQN 50 (74)
T ss_dssp HHHHHHHHHHHHHHHTTTC--------
T ss_pred chhHHHHHHHHHHHHHcCccccCCCCC
Confidence 356778888898888777655444444
No 7
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=53.96 E-value=7 Score=25.82 Aligned_cols=27 Identities=19% Similarity=0.372 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHHhhhhccccccccccc
Q 026497 181 SLVGAVIIVIGFYVVMWGKAKEENTID 207 (237)
Q Consensus 181 ~~iG~~lIl~Gv~l~~~~~~~~~~~~~ 207 (237)
.+++++|.++|+++...+|=+.+..++
T Consensus 22 LifA~vLfi~GI~iilS~kcrCk~~qk 48 (67)
T 2jp3_A 22 LIFGGLLCIAGIALALSGKCKCRRNHT 48 (67)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHTCC
T ss_pred hhhHHHHHHHHHHHHHcCcccccCCCC
Confidence 356777888888887766544444333
No 8
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=46.92 E-value=1.4e+02 Score=25.71 Aligned_cols=13 Identities=15% Similarity=-0.291 Sum_probs=6.5
Q ss_pred HHHHHHHhccChh
Q 026497 140 TLLLWCLMRAGPL 152 (237)
Q Consensus 140 ~l~~~~l~~~~a~ 152 (237)
..+....+..++.
T Consensus 406 ~~~~~~~~~~p~~ 418 (491)
T 4aps_A 406 VGLSVTTKLAPKA 418 (491)
T ss_dssp HHHHHHHHHTTTT
T ss_pred HHHHHHHHhCCHH
Confidence 3455555555544
No 9
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=44.20 E-value=1.4e+02 Score=25.07 Aligned_cols=23 Identities=13% Similarity=-0.120 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHhccChh
Q 026497 130 SAVIGAAFLTTLLLWCLMRAGPL 152 (237)
Q Consensus 130 lgi~~t~la~~l~~~~l~~~~a~ 152 (237)
.|+......-..+....+..++.
T Consensus 356 ~g~~~~~~~~~~~~~~~~~~~~~ 378 (451)
T 1pw4_A 356 IGFLIYGPVMLIGLHALELAPKK 378 (451)
T ss_dssp HHHHHTHHHHHHHHHHHHTSCTT
T ss_pred HHHHHhchHHHHHHHHHHHhchh
Confidence 34433333333445666666655
No 10
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=37.34 E-value=24 Score=21.33 Aligned_cols=7 Identities=29% Similarity=0.292 Sum_probs=2.5
Q ss_pred Hhhhhcc
Q 026497 192 FYVVMWG 198 (237)
Q Consensus 192 v~l~~~~ 198 (237)
+++..++
T Consensus 30 ~~~~~RR 36 (44)
T 2l2t_A 30 FAVYVRR 36 (44)
T ss_dssp HHHHHHT
T ss_pred HHHHhhh
Confidence 3333333
No 11
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=32.05 E-value=30 Score=23.05 Aligned_cols=19 Identities=11% Similarity=0.560 Sum_probs=12.7
Q ss_pred hHHHHHHHHHHHhhhhccc
Q 026497 181 SLVGAVIIVIGFYVVMWGK 199 (237)
Q Consensus 181 ~~iG~~lIl~Gv~l~~~~~ 199 (237)
.++++++.++|+++...+|
T Consensus 21 LifA~vLfi~GI~iilS~K 39 (72)
T 2jo1_A 21 LVIAGILFILGILIVLSRR 39 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCc
Confidence 3556777778877766554
No 12
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=31.44 E-value=1.2e+02 Score=30.14 Aligned_cols=51 Identities=10% Similarity=-0.086 Sum_probs=34.4
Q ss_pred HHHHHHHHhccChhhhhhhhhhHHHHHHHHHHHHhcCCcchhhHHHHHHHH
Q 026497 139 TTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIV 189 (237)
Q Consensus 139 ~~l~~~~l~~~~a~~~s~~~~l~Pv~a~ll~~l~lgE~l~~~~~iG~~lIl 189 (237)
|.+.....+........++....-+.+.+.+..++|.+++...++|.++++
T Consensus 885 ~l~L~~~f~s~~~~l~~l~~i~~~~~~~~~~l~~~g~~l~~~~~~g~i~l~ 935 (1057)
T 4dx5_A 885 FLCLAALYESWSIPFSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTI 935 (1057)
T ss_dssp HHHHHHHHTCSSTHHHHHTTHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHCCCccHHHHHHHHHHH
Confidence 444444445555555555555555677788888899999999988876543
No 13
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=20.17 E-value=4e+02 Score=22.64 Aligned_cols=19 Identities=5% Similarity=-0.068 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 026497 65 AQAILISAWYILQAITLKE 83 (237)
Q Consensus 65 laa~~~a~y~v~~~~~~~~ 83 (237)
...+...+..+...++.+|
T Consensus 62 ~~~~~~~~~~~~~g~l~dr 80 (491)
T 4aps_A 62 IYASMVYLSGTIGGFVADR 80 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3344444455555555555
Done!