BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>026498
MYPWPLVKRVKRCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILY
RFCDGQECQTDDFESIGAMGLIGGYSFYGHLVNVYLIPLSHIIMETKEIRRHLDFPGRDK
YVVVAFSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEMIPCVPNALIALGHGCNSDQQQDG
MLLWLEEHGRRLHNGIIRLRDEENLKFINLFPEEPPLCSIAVTNGVKVSYSSDLRWL

High Scoring Gene Products

Symbol, full name Information P value
SKIP16
SKP1/ASK-interacting protein 16
protein from Arabidopsis thaliana 1.8e-69

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  026498
        (237 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2198826 - symbol:SKIP16 "SKP1/ASK-interacting ...   704  1.8e-69   1


>TAIR|locus:2198826 [details] [associations]
            symbol:SKIP16 "SKP1/ASK-interacting protein 16"
            species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
            evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0019005 "SCF
            ubiquitin ligase complex" evidence=IPI] [GO:0019243 "methylglyoxal
            catabolic process to D-lactate" evidence=RCA] PROSITE:PS50181
            UniPathway:UPA00143 EMBL:CP002684 GenomeReviews:CT485782_GR
            GO:GO:0016567 EMBL:AC024174 GO:GO:0019005 HSSP:Q7VU61
            Gene3D:2.60.40.1470 InterPro:IPR007474 Pfam:PF04379
            SUPFAM:SSF110069 PROSITE:PS51087 KO:K10290 EMBL:AF419599
            EMBL:AY099571 EMBL:BT002142 IPI:IPI00545043 PIR:D86196
            RefSeq:NP_563759.1 UniGene:At.15468 ProteinModelPortal:Q9LND7
            SMR:Q9LND7 IntAct:Q9LND7 STRING:Q9LND7 PaxDb:Q9LND7 PRIDE:Q9LND7
            EnsemblPlants:AT1G06110.1 GeneID:837120 KEGG:ath:AT1G06110
            TAIR:At1g06110 eggNOG:NOG296925 HOGENOM:HOG000243753
            InParanoid:Q9LND7 OMA:VNVYLLP PhylomeDB:Q9LND7
            ProtClustDB:CLSN2687703 Genevestigator:Q9LND7 Uniprot:Q9LND7
        Length = 436

 Score = 704 (252.9 bits), Expect = 1.8e-69, P = 1.8e-69
 Identities = 138/233 (59%), Positives = 167/233 (71%)

Query:     1 MYPWPLVKRVKRCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILY 60
             MYPW LVKRV+ CWD LK WL  NFPEAKATLRKG +E D+Q+ E SLKVKLP+PTR+LY
Sbjct:    80 MYPWNLVKRVRLCWDNLKQWLTLNFPEAKATLRKGVTEDDLQEFETSLKVKLPLPTRLLY 139

Query:    61 RFCDGQECQTDDFESIGAMGLIGGYSFYGHLVNVYLIPLSHIIMETKE-IRRHLDFPGRD 119
             RF DGQE  + +    G++GLIGGYS Y H VNVYL+PL  ++ ETKE   R L F  R 
Sbjct:   140 RFVDGQELSSPNGLD-GSLGLIGGYSAYSHDVNVYLLPLKEVMRETKESFMRDLGFSSRL 198

Query:   120 KYVVVAFSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEMIPCVPNALIALGHGCNSDQQQD 179
               +V+A S   S K F L+CT GQL+ GT N     +++PCVP+AL+   H  N DQQQD
Sbjct:   199 DLIVMAASVVASLKIFLLDCTTGQLFTGTSNR----QLLPCVPDALVRSVHDTNGDQQQD 254

Query:   180 GMLLWLEEHGRRLHNGIIRLRDEENLKFINLFPEEPPLCSIAVTNGVKVSYSS 232
              MLLWLEEHGRRL  G I +R + N+K I+LFPE PPLCS++VTNGV+V  SS
Sbjct:   255 AMLLWLEEHGRRLQTGTINVRQQNNVKSISLFPEIPPLCSVSVTNGVQVRASS 307


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.140   0.444    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      237       237   0.00090  113 3  11 22  0.39    33
                                                     32  0.43    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  604 (64 KB)
  Total size of DFA:  208 KB (2117 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.62u 0.08s 20.70t   Elapsed:  00:00:00
  Total cpu time:  20.62u 0.08s 20.70t   Elapsed:  00:00:00
  Start:  Fri May 10 16:34:49 2013   End:  Fri May 10 16:34:49 2013

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