BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026498
(237 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LND7|SKI16_ARATH F-box protein SKIP16 OS=Arabidopsis thaliana GN=SKIP16 PE=1 SV=1
Length = 436
Score = 277 bits (709), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 138/233 (59%), Positives = 167/233 (71%), Gaps = 6/233 (2%)
Query: 1 MYPWPLVKRVKRCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILY 60
MYPW LVKRV+ CWD LK WL NFPEAKATLRKG +E D+Q+ E SLKVKLP+PTR+LY
Sbjct: 80 MYPWNLVKRVRLCWDNLKQWLTLNFPEAKATLRKGVTEDDLQEFETSLKVKLPLPTRLLY 139
Query: 61 RFCDGQECQTDDFESIGAMGLIGGYSFYGHLVNVYLIPLSHIIMETKE-IRRHLDFPGRD 119
RF DGQE + + G++GLIGGYS Y H VNVYL+PL ++ ETKE R L F R
Sbjct: 140 RFVDGQELSSPNGLD-GSLGLIGGYSAYSHDVNVYLLPLKEVMRETKESFMRDLGFSSRL 198
Query: 120 KYVVVAFSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEMIPCVPNALIALGHGCNSDQQQD 179
+V+A S S K F L+CT GQL+ GT N +++PCVP+AL+ H N DQQQD
Sbjct: 199 DLIVMAASVVASLKIFLLDCTTGQLFTGTSN----RQLLPCVPDALVRSVHDTNGDQQQD 254
Query: 180 GMLLWLEEHGRRLHNGIIRLRDEENLKFINLFPEEPPLCSIAVTNGVKVSYSS 232
MLLWLEEHGRRL G I +R + N+K I+LFPE PPLCS++VTNGV+V SS
Sbjct: 255 AMLLWLEEHGRRLQTGTINVRQQNNVKSISLFPEIPPLCSVSVTNGVQVRASS 307
>sp|Q6BW41|SMI1_DEBHA KNR4/SMI1 homolog 1 OS=Debaryomyces hansenii (strain ATCC 36239 /
CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=DEHA2B14542g PE=3 SV=2
Length = 451
Score = 54.7 bits (130), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 54/109 (49%), Gaps = 13/109 (11%)
Query: 7 VKRVKRCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILYRFCDGQ 66
V V+ W +KNWL + P+ +TL+ ++AD+ +K L +KLP Y+ DGQ
Sbjct: 70 VHEVRLAWRHIKNWLLKYSPDLNSTLQSPCTDADLSDFQKDLNIKLPNCLIEFYKITDGQ 129
Query: 67 ECQTDDFESIGAMGLIGGYSFYGHLVNVYLIPLSHIIMETKEIRRHLDF 115
F G+ GL+ G + L+P+ +++ T+ R+ D+
Sbjct: 130 SY----FNDNGSGGLVFG---------LKLMPIDEVMVMTEHWRKVADY 165
>sp|Q6BJY4|SMI2_DEBHA KNR4/SMI1 homolog 2 OS=Debaryomyces hansenii (strain ATCC 36239 /
CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=DEHA2F26422g PE=3 SV=2
Length = 590
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 5 PLVKRVKRCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKV-KLPVPTRILYRFC 63
P + + WDR+++WL E +PE L G + AD+ + E L LPV R Y+
Sbjct: 112 PPLPSIDSLWDRIESWLEEEYPELGDNLNDGVTTADLNEFENDLGCGSLPVEIRQFYKRH 171
Query: 64 DGQ 66
DGQ
Sbjct: 172 DGQ 174
>sp|Q6FL35|SMI1_CANGA KNR4/SMI1 homolog OS=Candida glabrata (strain ATCC 2001 / CBS 138 /
JCM 3761 / NBRC 0622 / NRRL Y-65) GN=CAGL0L06534g PE=3
SV=1
Length = 584
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 50/113 (44%), Gaps = 14/113 (12%)
Query: 3 PWPLVKRVKRCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILYRF 62
P V V W + W +E P+ ATL + DI+ E+ L+V LP + YR
Sbjct: 71 PSEGVSEVLLAWRHIDTWTSEYNPDLNATLSDPCTANDIKHAEEDLEVVLPKALKASYRI 130
Query: 63 CDGQECQTDDFESI-GAMGLIGGYSFYGHLVNVYLIPLSHIIMETKEIRRHLD 114
DGQE D ES+ G GLI G + L+ L I+ T+ R D
Sbjct: 131 HDGQE----DLESMTGTSGLIYG---------LQLMTLDEIVAMTQRWRSVAD 170
>sp|P32566|SMI1_YEAST Cell wall assembly regulator SMI1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SMI1 PE=1 SV=1
Length = 505
Score = 47.4 bits (111), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 14/99 (14%)
Query: 13 CWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILYRFCDGQECQTDD 72
W + W +E+ P+ ATL ++ DI E+ L+V P P + ++ DGQE D
Sbjct: 93 AWRHIDFWTSEHNPDLNATLSDPCTQNDITHAEEDLEVSFPNPVKASFKIHDGQE----D 148
Query: 73 FESI-GAMGLIGGYSFYGHLVNVYLIPLSHIIMETKEIR 110
ES+ G GL FYG L+ L ++ T+ R
Sbjct: 149 LESMTGTSGL-----FYG----FQLMTLDQVVAMTQAWR 178
>sp|Q75AQ9|SMI1_ASHGO KNR4/SMI1 homolog OS=Ashbya gossypii (strain ATCC 10895 / CBS
109.51 / FGSC 9923 / NRRL Y-1056) GN=ADL139W PE=3 SV=2
Length = 657
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 13 CWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILYRFCDGQECQTDD 72
W + +W +E+ P+ ATL + DI EK L + P R R DGQE D
Sbjct: 69 AWRHIDSWCSEHNPDLYATLSSPCTNNDIMWAEKDLAITFPAAVRASLRTHDGQE----D 124
Query: 73 FESI-GAMGLIGGYSFYG 89
ES+ GA GLI G G
Sbjct: 125 VESMQGASGLIYGLKLMG 142
>sp|Q9UK99|FBX3_HUMAN F-box only protein 3 OS=Homo sapiens GN=FBXO3 PE=1 SV=3
Length = 471
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 10 VKRCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILYRFCDGQECQ 69
+K+ WD LK +L P +L++GA E D+ +E + KLP R YR +GQ+
Sbjct: 96 IKKAWDDLKKYLEPRCPRMVLSLKEGAREEDLDAVEAQIGCKLPDDYRCSYRIHNGQKLV 155
Query: 70 TDDFESIGAMGLIGGY 85
+G+M L Y
Sbjct: 156 VPGL--LGSMALSNHY 169
>sp|D4ABP9|FBX3_RAT F-box only protein 3 OS=Rattus norvegicus GN=Fbxo3 PE=3 SV=1
Length = 480
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 10 VKRCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILYRFCDGQECQ 69
+K+ WD LK +L P +L++GA E D+ +E + KLP R YR +GQ+
Sbjct: 96 IKKAWDDLKKYLEPRCPRMVLSLKEGAREEDLDAVEAQIGCKLPDDYRCSYRIHNGQKLV 155
Query: 70 TDDFESIGAMGLIGGY 85
+G+M L Y
Sbjct: 156 VPGL--LGSMALSNHY 169
>sp|A6H7H7|FBX3_BOVIN F-box only protein 3 OS=Bos taurus GN=FBXO3 PE=2 SV=1
Length = 469
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 10 VKRCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILYRFCDGQECQ 69
+K+ WD LK +L P +L++GA E D+ +E + KLP R YR +GQ+
Sbjct: 96 IKKAWDDLKKYLEPRCPRMVLSLKEGAREEDLDAVEAQIGCKLPDDYRCSYRIHNGQKLV 155
Query: 70 TDDFESIGAMGLIGGY 85
+G+M L Y
Sbjct: 156 VPGL--LGSMALSNHY 169
>sp|Q6CN28|SMI1_KLULA KNR4/SMI1 homolog OS=Kluyveromyces lactis (strain ATCC 8585 / CBS
2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)
GN=KLLA0E15862g PE=3 SV=1
Length = 535
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 32/77 (41%), Gaps = 3/77 (3%)
Query: 13 CWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILYRFCDGQECQTDD 72
W + NW +++ P+ ATL + DI EK L + P R R DGQE D
Sbjct: 73 AWRHIDNWTSQHNPDLAATLSDPCTRHDINNAEKDLDIIFPASVRASLRLHDGQE---DL 129
Query: 73 FESIGAMGLIGGYSFYG 89
G GL G G
Sbjct: 130 VSMTGTGGLFFGLQLMG 146
>sp|Q9DC63|FBX3_MOUSE F-box only protein 3 OS=Mus musculus GN=Fbxo3 PE=2 SV=1
Length = 480
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 10 VKRCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILYRFCDGQECQ 69
+K+ W LK +L P +L++GA E D+ +E + KLP R YR +GQ+
Sbjct: 96 IKKAWRDLKKYLEPRCPRMVLSLKEGAREEDLDAVEAQIGCKLPDDYRCSYRIHNGQKLV 155
Query: 70 TDDFESIGAMGLIGGY 85
+G+M L Y
Sbjct: 156 VPGL--LGSMALSNHY 169
>sp|Q6CDX0|SMI1_YARLI KNR4/SMI1 homolog OS=Yarrowia lipolytica (strain CLIB 122 / E 150)
GN=YALI0B20570g PE=3 SV=1
Length = 713
Score = 40.0 bits (92), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 30/63 (47%)
Query: 5 PLVKRVKRCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILYRFCD 64
P V W+R+ W E++PE L A+ +D+ +LE L LP+ R D
Sbjct: 141 PPAPSVAMSWERIDKWADEHYPELNDQLCYPATASDLNELEADLDCSLPLDVRDSCLIHD 200
Query: 65 GQE 67
GQE
Sbjct: 201 GQE 203
>sp|P38678|GS1_NEUCR Glucan synthesis regulatory protein OS=Neurospora crassa (strain
ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
987) GN=gs-1 PE=2 SV=1
Length = 532
Score = 39.7 bits (91), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 30/63 (47%)
Query: 5 PLVKRVKRCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILYRFCD 64
P V W+++ W EN+PE L +G + D+ +LE L LP R + D
Sbjct: 124 PPPPPVASSWEKIDRWAEENYPELFDQLGEGCTVNDLNELEYQLDCTLPQDLRQSLQIHD 183
Query: 65 GQE 67
GQE
Sbjct: 184 GQE 186
>sp|O14362|SMI1_SCHPO Cell wall biosynthesis/cell cycle regulator smi1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=smi1 PE=1 SV=1
Length = 504
Score = 36.6 bits (83), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 27/58 (46%)
Query: 10 VKRCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILYRFCDGQE 67
V W R+ W EN+ E L GA+ AD+ LE L+ LP R DGQ+
Sbjct: 128 VSESWRRIDRWAEENYYELYCQLCYGATVADVDSLEYELECTLPRDVRESLYIHDGQD 185
>sp|P03362|POL_HTL1A Gag-Pro-Pol polyprotein OS=Human T-cell leukemia virus 1 (strain
Japan ATK-1 subtype A) GN=gag-pro-pol PE=1 SV=3
Length = 1462
Score = 33.9 bits (76), Expect = 1.0, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 19 NWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRI 58
+WL NF +A L G S D QL+K LK+ L P RI
Sbjct: 23 HWL--NFLQAAYRLEPGPSSYDFHQLKKFLKIALETPARI 60
>sp|Q9D4C6|LR2BP_MOUSE LRP2-binding protein OS=Mus musculus GN=Lrp2bp PE=2 SV=1
Length = 346
Score = 32.3 bits (72), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 54/149 (36%), Gaps = 27/149 (18%)
Query: 62 FCDGQECQTDDFESIGAMGLIGGYSFYGHLVNVYLIPLSHIIMETKEIRRHLDFPGRDKY 121
F + C ES GA+GL+ FYG + H + E E + Y
Sbjct: 195 FWHSEACGNGSLESQGALGLM---YFYGQGIRQDTDAALHCLREAAE--------RGNVY 243
Query: 122 VVVAFSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEMIP----CVPNALIALGHGCNSDQQ 177
Y + FF C + + + + D MI C+P +I
Sbjct: 244 AQGTLVEYYYKMKFFTKCVSFSKRIADYDEVHDIPMIAHVTDCLPEFII----------- 292
Query: 178 QDGMLLWLEEHGRRLHNGIIRLRDEENLK 206
GM + HGR L G+ ++DEE+ K
Sbjct: 293 -KGMAMAAFYHGRCLQLGLGIMKDEESAK 320
>sp|P03371|POL_EIAVY Pol polyprotein OS=Equine infectious anemia virus (strain Wyoming)
GN=pol PE=3 SV=1
Length = 1145
Score = 32.0 bits (71), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 165 LIALGHGCNSDQQQDGMLLWLEEHGRRLHNGIIRLRDEENLKFINLFPEEPPLCSIAVTN 224
+ A GC Q+ ++W EE + L ++++ + L++ N PEE LC + +T
Sbjct: 463 IAATTKGCLELNQK---VIWTEEAQKELEENNEKIKNAQGLQYYN--PEEEMLCEVEITK 517
Query: 225 GVKVSY 230
+ +Y
Sbjct: 518 NYEATY 523
>sp|P11204|POL_EIAV9 Pol polyprotein OS=Equine infectious anemia virus (isolate 1369)
GN=pol PE=1 SV=1
Length = 1146
Score = 32.0 bits (71), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 165 LIALGHGCNSDQQQDGMLLWLEEHGRRLHNGIIRLRDEENLKFINLFPEEPPLCSIAVTN 224
+ A GC Q+ ++W EE + L ++++ + L++ N PEE LC + +T
Sbjct: 464 IAATTKGCLELNQK---VIWTEEAQKELEENNEKIKNAQGLQYYN--PEEEMLCEVEITK 518
Query: 225 GVKVSY 230
+ +Y
Sbjct: 519 NYEATY 524
>sp|P32542|POL_EIAVC Pol polyprotein OS=Equine infectious anemia virus (isolate CL22)
GN=pol PE=1 SV=1
Length = 1146
Score = 32.0 bits (71), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 165 LIALGHGCNSDQQQDGMLLWLEEHGRRLHNGIIRLRDEENLKFINLFPEEPPLCSIAVTN 224
+ A GC Q+ ++W EE + L ++++ + L++ N PEE LC + +T
Sbjct: 464 IAATTKGCLELNQK---VIWTEEAQKELEENNEKIKNAQGLQYYN--PEEEMLCEVEITK 518
Query: 225 GVKVSY 230
+ +Y
Sbjct: 519 NYEATY 524
>sp|Q5KW09|SYL_GEOKA Leucine--tRNA ligase OS=Geobacillus kaustophilus (strain HTA426)
GN=leuS PE=3 SV=1
Length = 805
Score = 31.6 bits (70), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 170 HGCNSDQQQDGMLLWLEEHGRRLHNGIIRLRD 201
+G N + D M+ WLEEHG+ RLRD
Sbjct: 383 NGLNKQEAIDKMIAWLEEHGKGRKKVSYRLRD 414
>sp|P03345|GAG_HTL1A Gag polyprotein OS=Human T-cell leukemia virus 1 (strain Japan
ATK-1 subtype A) GN=gag PE=1 SV=3
Length = 429
Score = 31.2 bits (69), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 19 NWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRI 58
+WL NF +A L G S D QL+K LK+ L P RI
Sbjct: 23 HWL--NFLQAAYRLEPGPSSYDFHQLKKFLKIALETPARI 60
>sp|A9KQI8|MURC_CLOPH UDP-N-acetylmuramate--L-alanine ligase OS=Clostridium
phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg)
GN=murC PE=3 SV=1
Length = 469
Score = 30.8 bits (68), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 104 METKEIRRHLDFPGRDKYVVVAFSSTYSEKFFFLNCTNGQLYV--GTKNLLSDGE 156
+ +K+I+ L G++ Y + F+ EKF +CTNG L + G +++S GE
Sbjct: 412 ISSKDIQNELLKIGKEAYYISDFAEI--EKFLLEHCTNGDLLITMGAGDVVSIGE 464
>sp|P10274|PRO_HTL1A Gag-Pro polyprotein OS=Human T-cell leukemia virus 1 (strain
Japan ATK-1 subtype A) GN=gag-pro PE=1 SV=3
Length = 651
Score = 30.8 bits (68), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 19 NWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRI 58
+WL NF +A L G S D QL+K LK+ L P RI
Sbjct: 23 HWL--NFLQAAYRLEPGPSSYDFHQLKKFLKIALETPARI 60
>sp|P23804|MDM2_MOUSE E3 ubiquitin-protein ligase Mdm2 OS=Mus musculus GN=Mdm2 PE=1 SV=3
Length = 489
Score = 30.4 bits (67), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 5 PLVKRVKRCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKV 50
PL KRCW +NWL ++ + K + + A + Q E+ L V
Sbjct: 312 PLPSHCKRCWTLRENWLPDDKGKDKVEISEKAKLENSAQAEEGLDV 357
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.140 0.444
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,875,461
Number of Sequences: 539616
Number of extensions: 4017318
Number of successful extensions: 8944
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 8921
Number of HSP's gapped (non-prelim): 25
length of query: 237
length of database: 191,569,459
effective HSP length: 114
effective length of query: 123
effective length of database: 130,053,235
effective search space: 15996547905
effective search space used: 15996547905
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)