Query 026498
Match_columns 237
No_of_seqs 160 out of 280
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 08:48:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026498.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026498hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4408 Putative Mg2+ and Co2+ 99.9 3.4E-24 7.4E-29 194.8 1.6 189 1-234 75-265 (386)
2 COG4282 SMI1 Protein involved 99.9 1.3E-21 2.8E-26 162.8 13.2 174 5-203 2-186 (191)
3 PF09346 SMI1_KNR4: SMI1 / KNR 98.9 1.2E-09 2.5E-14 84.5 3.0 34 35-68 1-34 (130)
4 smart00860 SMI1_KNR4 SMI1 / KN 98.6 8.9E-08 1.9E-12 72.0 7.1 35 35-69 1-35 (129)
5 PF14568 SUKH_6: SMI1-KNR4 cel 98.2 9.1E-06 2E-10 62.6 8.3 31 38-68 1-31 (120)
6 PF14567 SUKH_5: SMI1-KNR4 cel 97.8 0.00019 4.1E-09 58.6 9.5 87 34-144 20-106 (132)
7 PF07348 Syd: Syd protein (SUK 91.2 1.2 2.7E-05 38.0 7.9 114 37-188 55-174 (176)
8 PRK04968 SecY interacting prot 83.9 10 0.00022 32.7 9.0 115 37-189 56-176 (181)
9 KOG0037 Ca2+-binding protein, 51.8 57 0.0012 28.9 6.7 52 7-60 113-165 (221)
10 PRK03643 altronate oxidoreduct 51.6 24 0.00051 34.6 4.7 45 7-51 183-233 (471)
11 PHA02688 ORF059 IMV protein VP 49.7 13 0.00028 34.7 2.5 26 11-36 253-278 (323)
12 PRK12449 acyl carrier protein; 48.4 52 0.0011 23.5 5.1 46 11-56 4-61 (80)
13 PF04265 TPK_B1_binding: Thiam 46.9 8.9 0.00019 27.1 0.7 31 195-227 1-33 (68)
14 CHL00124 acpP acyl carrier pro 45.8 56 0.0012 23.4 4.9 45 12-56 5-61 (82)
15 COG0246 MtlD Mannitol-1-phosph 41.7 45 0.00097 32.8 4.9 48 6-53 185-236 (473)
16 PF03213 Pox_P35: Poxvirus P35 40.9 20 0.00043 33.5 2.2 25 12-36 256-280 (325)
17 TIGR00517 acyl_carrier acyl ca 40.9 63 0.0014 22.8 4.5 45 12-56 3-59 (77)
18 PF11829 DUF3349: Protein of u 39.3 69 0.0015 24.8 4.6 39 10-48 1-48 (96)
19 PF08060 NOSIC: NOSIC (NUC001) 38.8 31 0.00068 23.4 2.4 29 7-35 13-41 (53)
20 PF05597 Phasin: Poly(hydroxya 38.0 68 0.0015 26.1 4.7 42 7-49 78-119 (132)
21 TIGR02336 1,3-beta-galactosyl- 34.2 66 0.0014 33.2 4.8 46 9-55 187-258 (719)
22 smart00431 SCAN leucine rich r 31.1 1.1E+02 0.0023 24.4 4.7 48 8-66 21-71 (113)
23 PF08828 DSX_dimer: Doublesex 30.4 47 0.001 23.7 2.2 18 2-19 19-47 (62)
24 PRK05350 acyl carrier protein; 28.9 1.5E+02 0.0033 21.3 5.0 44 12-55 6-61 (82)
25 PF10691 DUF2497: Protein of u 28.0 36 0.00078 25.0 1.4 16 16-31 46-61 (73)
26 COG3825 Uncharacterized protei 27.9 82 0.0018 29.8 4.0 51 14-64 69-122 (393)
27 PF09508 Lact_bio_phlase: Lact 27.5 74 0.0016 32.7 3.9 45 10-55 185-255 (716)
28 TIGR01159 DRP1 density-regulat 27.4 58 0.0013 27.8 2.8 23 13-35 22-44 (173)
29 cd07995 TPK Thiamine pyrophosp 25.8 60 0.0013 27.7 2.6 33 193-227 137-169 (208)
30 PRK07639 acyl carrier protein; 25.4 1.3E+02 0.0028 22.3 4.0 43 13-55 6-61 (86)
31 TIGR01837 PHA_granule_1 poly(h 24.7 1.5E+02 0.0032 23.4 4.5 38 11-49 69-106 (118)
32 PRK15037 D-mannonate oxidoredu 24.7 90 0.002 30.8 3.9 40 15-54 208-250 (486)
33 PF10076 DUF2313: Uncharacteri 24.3 1.2E+02 0.0027 25.1 4.2 37 8-52 29-65 (179)
34 PF14331 ImcF-related_N: ImcF- 23.9 1.3E+02 0.0029 26.8 4.6 46 9-54 5-72 (266)
35 PF07494 Reg_prop: Two compone 23.8 75 0.0016 17.8 2.0 12 139-150 13-24 (24)
36 PRK07117 acyl carrier protein; 21.5 2.8E+02 0.0061 20.2 5.2 45 12-56 5-61 (79)
37 PHA02130 hypothetical protein 20.8 75 0.0016 23.2 1.8 17 12-28 14-30 (81)
38 PF11332 DUF3134: Protein of u 20.7 61 0.0013 23.9 1.4 17 176-192 19-35 (73)
No 1
>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]
Probab=99.88 E-value=3.4e-24 Score=194.77 Aligned_cols=189 Identities=23% Similarity=0.281 Sum_probs=152.6
Q ss_pred CCCChhHHHHHHHHHH-HHHHHHhhChhhHhhcCCCCCHHHHHHHHHHcCCCCCHHHHHHhHHhCCCcCcCCCccccccc
Q 026498 1 MYPWPLVKRVKRCWDR-LKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILYRFCDGQECQTDDFESIGAM 79 (237)
Q Consensus 1 ~y~~~~~~~v~~~W~r-ie~wL~~~~P~~~~~L~~gate~eI~~~E~~lg~~LP~~lr~lyr~hnGq~~~~~~~~~~~~~ 79 (237)
||||.++++|.-.|+. ++.|...|.|+..++|++||++.|++++|+.+|++||.++|++||++|||... .+
T Consensus 75 h~~f~yvgvv~~~w~arlk~wd~ln~~~~~aal~ega~e~dl~a~e~s~~~kLp~~~r~~yrev~Gq~l~--------~y 146 (386)
T KOG4408|consen 75 HDTFGYVGVVLFPWAARLKDWDDLNKYLEPAALKEGAREPDLDAVEASIGCKLPDDYRCSYREVKGQTLT--------FY 146 (386)
T ss_pred eeecccceEEEEechHhhhhhhhcccccccchhhccCcccchhhhhhcccccCCCccccchhhcCCeEEe--------eh
Confidence 6899999999999997 99999999999999999999999999999999999999999999999999986 69
Q ss_pred ccccceeeccceeeeeecChHHHHHHHHHHHhhcCCC-CCCeeeEEEeccCCCcceEEEecCCCeeEEeeeccCCCCccc
Q 026498 80 GLIGGYSFYGHLVNVYLIPLSHIIMETKEIRRHLDFP-GRDKYVVVAFSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEMI 158 (237)
Q Consensus 80 Gl~gg~~~y~~~~~~~LLpL~~i~~~~~~~r~~~~~~-g~~~~i~~~as~~~~~~~~~ld~~~G~l~vg~~n~~~~G~~~ 158 (237)
|++|+|..|+|.+. ++..+....-- .++ +.+ .+-.+++-.+-.+.++++|+.++.+-|+ -|.+
T Consensus 147 qvLi~~~d~sH~~~-------ev~~e~~t~~~--nf~~r~~-L~y~ipgld~v~hedilpyts~e~~~g~------heLf 210 (386)
T KOG4408|consen 147 QVLIDMRDCSHIRS-------EVQTEAVTFLG--NFDSRQG-LKYAIPGLDYVSHEDILPYTSSEAVPGQ------HELF 210 (386)
T ss_pred heeeecccCccccc-------hhhhhhhhhhc--Ccccccc-hheecccceeEeeccccccccccccccc------hhhh
Confidence 99999999999883 33333222211 221 111 1122233345567889999999876544 2678
Q ss_pred ccCccchhcccCCCCCCcccchHHHHHHHHhhhhhcccEEEeecCccceeeeCCCCCCCceeeEeCcEEEEEEeee
Q 026498 159 PCVPNALIALGHGCNSDQQQDGMLLWLEEHGRRLHNGIIRLRDEENLKFINLFPEEPPLCSIAVTNGVKVSYSSDL 234 (237)
Q Consensus 159 pcvp~~~i~~~~d~~~~~~~ds~~~WLe~~~~~L~~G~~~v~~~~~~r~i~lfP~~~p~c~~a~T~gv~V~~s~v~ 234 (237)
+|+|+ +.+..++.+.++.++.|++|+|+ ++ +|.+.+++ | +. +|||+|+|+||++|
T Consensus 211 ~~~pd-l~r~~~~~~~f~~q~tl~~W~e~--kn--~gwl~~~d------V-----h~-----etTenI~Vtvstfy 265 (386)
T KOG4408|consen 211 DQFPD-LARDPAAIPPFVIQDTLTAWQES--KN--HGWLPIRD------V-----HR-----ETTENIRVTVSTFY 265 (386)
T ss_pred hhhhh-hhcCcccCCchhhhHHHHHHHhc--CC--CCCcChhh------C-----Ch-----hhcCCeEEEEEEee
Confidence 99999 77888888899999999999999 55 89999884 2 11 89999999999998
No 2
>COG4282 SMI1 Protein involved in beta-1,3-glucan synthesis [Carbohydrate transport and metabolism]
Probab=99.87 E-value=1.3e-21 Score=162.77 Aligned_cols=174 Identities=21% Similarity=0.247 Sum_probs=140.2
Q ss_pred hhHHHHHHHHHHHHHHHHhhChhhHhhcCCCCCHHHHHHHHHHcCCCCCHHHHHHhHHhCCCcCcCCCcccccccccccc
Q 026498 5 PLVKRVKRCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILYRFCDGQECQTDDFESIGAMGLIGG 84 (237)
Q Consensus 5 ~~~~~v~~~W~rie~wL~~~~P~~~~~L~~gate~eI~~~E~~lg~~LP~~lr~lyr~hnGq~~~~~~~~~~~~~Gl~gg 84 (237)
|.+..+..+|+||+.|-++|.|++..+|+||||.++|+.+|++||++||+++|++|.+||||...+ ...|
T Consensus 2 ~~~se~slawrrId~W~aeh~pdl~~~l~pgat~~di~~aE~dlg~tlPpdvResl~iHDGq~dgs------~ptg---- 71 (191)
T COG4282 2 PNQSEPSLAWRRIDTWVAEHHPDLLPFLRPGATCGDIQRAEADLGRTLPPDVRESLAIHDGQPDGS------PPTG---- 71 (191)
T ss_pred CCCchHHHHHHHHHHHHHhcCcccccccCCCccHHHHHHHHHHhcCcCChHHHHHHHhhCCCcCCC------Cccc----
Confidence 456778899999999999999999999999999999999999999999999999999999998763 1223
Q ss_pred eeeccceeeeeecChHHHHHHHHHHHhhcC----CCCCCee-----eEEEeccCCCcceEEEecCCCeeEEeee-ccCCC
Q 026498 85 YSFYGHLVNVYLIPLSHIIMETKEIRRHLD----FPGRDKY-----VVVAFSSTYSEKFFFLNCTNGQLYVGTK-NLLSD 154 (237)
Q Consensus 85 ~~~y~~~~~~~LLpL~~i~~~~~~~r~~~~----~~g~~~~-----i~~~as~~~~~~~~~ld~~~G~l~vg~~-n~~~~ 154 (237)
.||.|+++..+++.||+... +.|+... -.|-...+.+..++.|+.+.++.-++.+ -++..
T Consensus 72 ----------~ll~le~~~~~~~aWrdlaq~~~T~~G~~s~~e~s~~sfppgvywhPaWIPL~~d~~Gnhi~IDLaPgp~ 141 (191)
T COG4282 72 ----------LLLRLEPLDLELIAWRDLAQRDGTYGGEVSPSEGSGRSFPPGVYWHPAWIPLFGDPRGNHICIDLAPGPT 141 (191)
T ss_pred ----------chhhhHHHHHHHHHHHHHHHhcCCcCCcccccccccccCCCCccccCceeeecccCCCCeEEEecCCCCC
Confidence 67888888888888877654 2233221 1122222456778999998888877777 45556
Q ss_pred CcccccCccchhcccCCCC-CCcccchHHHHHHHHhhhhhcccEEEeecC
Q 026498 155 GEMIPCVPNALIALGHGCN-SDQQQDGMLLWLEEHGRRLHNGIIRLRDEE 203 (237)
Q Consensus 155 G~~~pcvp~~~i~~~~d~~-~~~~~ds~~~WLe~~~~~L~~G~~~v~~~~ 203 (237)
|. -+|+|-+++|.+ .+..+-|+.++|...+..+++|..-+.++.
T Consensus 142 g~-----ygQiI~FgrD~dtk~vVa~swaefls~~And~e~g~wllddd~ 186 (191)
T COG4282 142 GG-----YGQIIWFGRDEDTKPVVAQSWAEFLSRIANDVETGRWLLDDDY 186 (191)
T ss_pred CC-----cceEEEeccccccCeehhccHHHHHHHHHhHHhhcceecccCc
Confidence 64 678999988876 889999999999999999999999887764
No 3
>PF09346 SMI1_KNR4: SMI1 / KNR4 family (SUKH-1); InterPro: IPR018958 Proteins in this family are involved in the regulation of 1,3-beta-glucan synthase activity and cell-wall formation [, ]. Yeast members of this family are involved in the regulation of cell wall assembly. Saccharomyces cerevisiae (Baker's yeast) protein KNR4 (SMI1) has a regulatory role in chitin deposition and in cell wall assembly []. It was originally identified as a regulator of chitin synthase expression (acting as a repressor) [] and of 1,3-beta-glucan synthase levels []. It was shown to localise in patches at presumptive bud sites in unbudded cells and at the incipient bud site during bud emergence []. KNR4 is believed to connect the PKC1-SLT2 MAPK pathway with cell proliferation. It has been shown to interact with BCK2, a gene involved in cell cycle progression in S. cerevisiae (forming a complex) to allow PKC1 to coordinate the cell cycle (cell proliferation) with cell wall integrity [, ]. PKC1 plays an essential role in cell wall integrity and cell proliferation through a bifurcated PKC1/mitogen-activated protein (MAP) kinase pathway. KNR4 also interacts with the tyrosine-tRNA synthetase protein encoded by TYS1 and is involved in sporulation process []. Note: previously reported evidence that KNR4 may interact with nuclear matrix-association region [] may be due to an artefact [].; PDB: 3D5P_A 2ICG_A.
Probab=98.87 E-value=1.2e-09 Score=84.46 Aligned_cols=34 Identities=29% Similarity=0.395 Sum_probs=21.0
Q ss_pred CCCHHHHHHHHHHcCCCCCHHHHHHhHHhCCCcC
Q 026498 35 GASEADIQQLEKSLKVKLPVPTRILYRFCDGQEC 68 (237)
Q Consensus 35 gate~eI~~~E~~lg~~LP~~lr~lyr~hnGq~~ 68 (237)
|||+++|+++|++||++||++||+||+.|++...
T Consensus 1 p~t~~~I~~~E~~lg~~LP~~yk~fl~~~~~~~~ 34 (130)
T PF09346_consen 1 PATEEEIQELEEKLGVRLPDDYKEFLKEHNNGGI 34 (130)
T ss_dssp ---HHHHHHHHHHHTS---HHHHHHHH-------
T ss_pred CCCHHHHHHHHHHhCCCCcHHHHHHHHhhccccc
Confidence 7999999999999999999999999998755444
No 4
>smart00860 SMI1_KNR4 SMI1 / KNR4 family. Proteins in this family are involved in the regulation of 1,3-beta-glucan synthase activity and cell-wall formation.
Probab=98.65 E-value=8.9e-08 Score=72.02 Aligned_cols=35 Identities=37% Similarity=0.490 Sum_probs=33.2
Q ss_pred CCCHHHHHHHHHHcCCCCCHHHHHHhHHhCCCcCc
Q 026498 35 GASEADIQQLEKSLKVKLPVPTRILYRFCDGQECQ 69 (237)
Q Consensus 35 gate~eI~~~E~~lg~~LP~~lr~lyr~hnGq~~~ 69 (237)
|+|+++|+++|+.||++||++||+||+.|||....
T Consensus 1 ~~s~~~i~~~e~~lg~~LP~~y~~f~~~~~g~~~~ 35 (129)
T smart00860 1 PASEEEIAELEKKLGIKLPEDYKEFLLLHNGGELG 35 (129)
T ss_pred CCCHHHHHHHHHHHCCCCCHHHHHHHHHcCCEEeC
Confidence 68999999999999999999999999999999765
No 5
>PF14568 SUKH_6: SMI1-KNR4 cell-wall; PDB: 2PRV_A.
Probab=98.19 E-value=9.1e-06 Score=62.65 Aligned_cols=31 Identities=32% Similarity=0.438 Sum_probs=24.5
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHhHHhCCCcC
Q 026498 38 EADIQQLEKSLKVKLPVPTRILYRFCDGQEC 68 (237)
Q Consensus 38 e~eI~~~E~~lg~~LP~~lr~lyr~hnGq~~ 68 (237)
+++|+++|++||++||.++|.+++.+||...
T Consensus 1 ee~I~~~E~~Lg~~lP~~Yk~fL~~~~gg~~ 31 (120)
T PF14568_consen 1 EEEIEEAEKKLGVKLPEDYKEFLKEYNGGYF 31 (120)
T ss_dssp -HHHHHHHHHHTS---HHHHHHHHHC-SEEE
T ss_pred ChHHHHHHHHhCCCCCHHHHHHHHHcCCEEE
Confidence 5899999999999999999999999999764
No 6
>PF14567 SUKH_5: SMI1-KNR4 cell-wall; PDB: 2PAG_A.
Probab=97.80 E-value=0.00019 Score=58.58 Aligned_cols=87 Identities=11% Similarity=0.188 Sum_probs=45.7
Q ss_pred CCCCHHHHHHHHHHcCCCCCHHHHHHhHHhCCCcCcCCCcccccccccccceeeccceeeeeecChHHHHHHHHHHHhhc
Q 026498 34 KGASEADIQQLEKSLKVKLPVPTRILYRFCDGQECQTDDFESIGAMGLIGGYSFYGHLVNVYLIPLSHIIMETKEIRRHL 113 (237)
Q Consensus 34 ~gate~eI~~~E~~lg~~LP~~lr~lyr~hnGq~~~~~~~~~~~~~Gl~gg~~~y~~~~~~~LLpL~~i~~~~~~~r~~~ 113 (237)
.++++++|.++|++||++||++||++++...+.....-. ..|+--. ..+.. +.+.+...|+ .
T Consensus 20 ~lpd~e~I~~~Ee~L~i~lP~eyk~fL~~~s~v~~G~~E-----~~~i~~~--------~s~~~----l~e~~~~ar~-~ 81 (132)
T PF14567_consen 20 ELPDDEQIVEAEEQLGISLPEEYKEFLLEASDVIYGGLE-----PVGIGDP--------PSHTY----LPEVTADARS-I 81 (132)
T ss_dssp ----HHHHHHHHHHHT----HHHHHHHHHHTT--BTTB------B-BSS-T--------TSTTB----HHHHHHHHHH-H
T ss_pred CCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCeeecceE-----EEEEEcC--------CCccc----HHHHHHHHHH-c
Confidence 468999999999999999999999999998766443211 1111110 01122 3444555565 4
Q ss_pred CCCCCCeeeEEEeccCCCcceEEEecCCCee
Q 026498 114 DFPGRDKYVVVAFSSTYSEKFFFLNCTNGQL 144 (237)
Q Consensus 114 ~~~g~~~~i~~~as~~~~~~~~~ld~~~G~l 144 (237)
+. +..++++|.. ++.++.+| .+|++
T Consensus 82 gl--P~~~ipice~---~~~yYcl~-~~g~V 106 (132)
T PF14567_consen 82 GL--PRELIPICED---GGDYYCLD-QEGEV 106 (132)
T ss_dssp T----TTSEEEEEE---TTEEEEE--TTS-E
T ss_pred CC--ChhheeEEec---CCcEEEEe-CCCeE
Confidence 44 5668999863 46777777 56664
No 7
>PF07348 Syd: Syd protein (SUKH-2); InterPro: IPR009948 This family contains a number of bacterial Syd proteins approximately 180 residues long. It has been suggested that Syd is loosely associated with the cytoplasmic surface of the cytoplasmic membrane, and that interaction with SecY may be involved in this membrane association [].; GO: 0009898 internal side of plasma membrane; PDB: 3FFV_B.
Probab=91.15 E-value=1.2 Score=38.03 Aligned_cols=114 Identities=12% Similarity=0.166 Sum_probs=53.7
Q ss_pred CHHHHHHHHHHcCCCCCHHHHHHhHHhCCCcCcCCCcccccccccccceeeccceeeeeecChHHHHHH------HHHHH
Q 026498 37 SEADIQQLEKSLKVKLPVPTRILYRFCDGQECQTDDFESIGAMGLIGGYSFYGHLVNVYLIPLSHIIME------TKEIR 110 (237)
Q Consensus 37 te~eI~~~E~~lg~~LP~~lr~lyr~hnGq~~~~~~~~~~~~~Gl~gg~~~y~~~~~~~LLpL~~i~~~------~~~~r 110 (237)
..+++..+|+.|+++|+++++++|- .-... .-.+-++|+. ..-+..+|=++..+- ...++
T Consensus 55 ~~~~f~~vE~aLei~lh~~i~~fy~----~~~~~------dm~a~~~~~~----l~LlqvW~e~Df~rLQeNliGHl~mk 120 (176)
T PF07348_consen 55 EAADFSNVERALEIQLHPDIHAFYG----SYFSG------DMPASFGGGE----LELLQVWNEDDFERLQENLIGHLVMK 120 (176)
T ss_dssp S-SS-HHHHHHCT----HHHHHHCC----SEE---------EEEEETTEE----EEE----SHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHhCCcccHHHHHHHh----hhhcc------CcceEeCCce----EEEEecCCcccHHHHHHHHHHHHHHH
Confidence 3578999999999999999999992 22210 1223333321 111223444444443 33444
Q ss_pred hhcCCCCCCeeeEEEeccCCCcceEEEecCCCeeEEeeeccCCCCcccccCccchhcccCCCCCCcccchHHHHHHHH
Q 026498 111 RHLDFPGRDKYVVVAFSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEMIPCVPNALIALGHGCNSDQQQDGMLLWLEEH 188 (237)
Q Consensus 111 ~~~~~~g~~~~i~~~as~~~~~~~~~ld~~~G~l~vg~~n~~~~G~~~pcvp~~~i~~~~d~~~~~~~ds~~~WLe~~ 188 (237)
+++.- .+..+|++.+ ....++-+|-.+|.+..=+ + |. -.+...++|+.++|+..
T Consensus 121 rrLKq-~pT~FIg~t~---~e~~lisv~N~sGeV~LE~--~---G~---------------~~~~~LA~sL~eFL~~L 174 (176)
T PF07348_consen 121 RRLKQ-PPTLFIGTTD---SEDMLISVDNESGEVILEQ--F---GT---------------KPREVLAPSLAEFLSQL 174 (176)
T ss_dssp HHTT----EEEEEEES---STTEEEEEETTT--EEEEE--T---TS---------------S-EEEEESSHHHHHHH-
T ss_pred Hhhcc-CCceeEEEec---CCCcEEEEECCCCeEEEEe--C---CC---------------CcceehhhhHHHHHHhc
Confidence 44432 1233455443 3466777777888775411 0 11 02467889998888753
No 8
>PRK04968 SecY interacting protein Syd; Provisional
Probab=83.89 E-value=10 Score=32.67 Aligned_cols=115 Identities=12% Similarity=0.171 Sum_probs=67.5
Q ss_pred CHHHHHHHHHHcCCCCCHHHHHHhHHhCCCcCcCCCcccccccccccceeeccceeeeeecChHHHHHHHHHHHhh----
Q 026498 37 SEADIQQLEKSLKVKLPVPTRILYRFCDGQECQTDDFESIGAMGLIGGYSFYGHLVNVYLIPLSHIIMETKEIRRH---- 112 (237)
Q Consensus 37 te~eI~~~E~~lg~~LP~~lr~lyr~hnGq~~~~~~~~~~~~~Gl~gg~~~y~~~~~~~LLpL~~i~~~~~~~r~~---- 112 (237)
.+.++..+|+.|+++|.++++++|--.=..+ -.+-++|.. ..-+..++.++..+-.+++-.+
T Consensus 56 ~~~~f~~vE~aLei~lh~~I~~fy~s~~s~d----------m~a~~~~~~----~~LlQvWsedDF~rLQeNliGHl~mq 121 (181)
T PRK04968 56 PEGNFNNVERALEITLHPDIHAFYTTQFAGD----------MTAQFGGGE----LTLLQVWSEDDFERLQENLIGHLVMQ 121 (181)
T ss_pred CcccHHHHHHhhcCeecHHHHHHHhhhhcCC----------cceEeCCce----EEEEEeccHHHHHHHHHHHHHHHHHH
Confidence 5679999999999999999999993321111 233344421 1223446777766644444333
Q ss_pred --cCCCCCCeeeEEEeccCCCcceEEEecCCCeeEEeeeccCCCCcccccCccchhcccCCCCCCcccchHHHHHHHHh
Q 026498 113 --LDFPGRDKYVVVAFSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEMIPCVPNALIALGHGCNSDQQQDGMLLWLEEHG 189 (237)
Q Consensus 113 --~~~~g~~~~i~~~as~~~~~~~~~ld~~~G~l~vg~~n~~~~G~~~pcvp~~~i~~~~d~~~~~~~ds~~~WLe~~~ 189 (237)
+-- .+.-+|+..+ ...+++-+|-.+|++..=+ -|. -.+...++|+.++|+..-
T Consensus 122 krLK~-~PT~FIg~~~---~e~~~isv~N~sGeV~lE~-----~G~---------------~~r~vLA~sL~eFL~~L~ 176 (181)
T PRK04968 122 KRLKL-PPTLFIATTD---EEDEVISVCNLSGEVILET-----LGT---------------RKRTVLAPSLAEFLNQLE 176 (181)
T ss_pred HhhCC-CCcEEEEEec---CCCeEEEEECCCCeEEEEe-----CCC---------------CcceehhhCHHHHHHhCC
Confidence 322 1233455432 3466777777788765411 011 025688999999887653
No 9
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=51.77 E-value=57 Score=28.95 Aligned_cols=52 Identities=19% Similarity=0.295 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHhhChhhHhhcCCC-CCHHHHHHHHHHcCCCCCHHHHHHh
Q 026498 7 VKRVKRCWDRLKNWLAENFPEAKATLRKG-ASEADIQQLEKSLKVKLPVPTRILY 60 (237)
Q Consensus 7 ~~~v~~~W~rie~wL~~~~P~~~~~L~~g-ate~eI~~~E~~lg~~LP~~lr~ly 60 (237)
.+.-+.+|+.|..|-... ...+.=+.| ....||..+=..+|++||+.+..+.
T Consensus 113 f~EF~~Lw~~i~~Wr~vF--~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~l 165 (221)
T KOG0037|consen 113 FKEFKALWKYINQWRNVF--RTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLL 165 (221)
T ss_pred HHHHHHHHHHHHHHHHHH--HhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHH
Confidence 467889999999997544 222222333 4788999999999999999998876
No 10
>PRK03643 altronate oxidoreductase; Provisional
Probab=51.64 E-value=24 Score=34.59 Aligned_cols=45 Identities=24% Similarity=0.456 Sum_probs=37.7
Q ss_pred HHHHHHHH---HHHHHHHHhh--Chh-hHhhcCCCCCHHHHHHHHHHcCCC
Q 026498 7 VKRVKRCW---DRLKNWLAEN--FPE-AKATLRKGASEADIQQLEKSLKVK 51 (237)
Q Consensus 7 ~~~v~~~W---~rie~wL~~~--~P~-~~~~L~~gate~eI~~~E~~lg~~ 51 (237)
|.+..+.| ..+.+|+++| ||. +.+..-|+.++++++++++++|+.
T Consensus 183 Vl~~a~~~~l~~~~~~Wi~~~v~FpnsmVDRIvP~~~~~~~~~~~~~~G~~ 233 (471)
T PRK03643 183 VLRYAQEWNLPEAFIQWLEEANTFCSTLVDRIVTGYPRDEAAALEEELGYE 233 (471)
T ss_pred HHHHHHhccCCHHHHHHHHhcCCCCCcceecCCCCCChHHHHHHHHHhCCC
Confidence 44556678 8899999998 576 558889999999999999999975
No 11
>PHA02688 ORF059 IMV protein VP55; Provisional
Probab=49.68 E-value=13 Score=34.66 Aligned_cols=26 Identities=31% Similarity=0.618 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHhhChhhHhhcCCCC
Q 026498 11 KRCWDRLKNWLAENFPEAKATLRKGA 36 (237)
Q Consensus 11 ~~~W~rie~wL~~~~P~~~~~L~~ga 36 (237)
...|.||.+||+.|+|.....|--|.
T Consensus 253 ~~lwsrl~~Wla~~~P~~~y~lttPL 278 (323)
T PHA02688 253 NSLWSRLGTWLAKRYPGFYYFLTTPL 278 (323)
T ss_pred hhHHHHHHHHHHhhCCchheeecchH
Confidence 56799999999999999887765553
No 12
>PRK12449 acyl carrier protein; Provisional
Probab=48.41 E-value=52 Score=23.47 Aligned_cols=46 Identities=13% Similarity=0.226 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHhhChhhHhhcCCCCCH------------HHHHHHHHHcCCCCCHHH
Q 026498 11 KRCWDRLKNWLAENFPEAKATLRKGASE------------ADIQQLEKSLKVKLPVPT 56 (237)
Q Consensus 11 ~~~W~rie~wL~~~~P~~~~~L~~gate------------~eI~~~E~~lg~~LP~~l 56 (237)
...++++.+-+++.++.....+.+-.+- +=+.++|.++|+.+|++-
T Consensus 4 ~~i~~~l~~il~~~~~~~~~~i~~~~~l~~dlg~DSl~~~~li~~lE~~f~i~i~~~~ 61 (80)
T PRK12449 4 EEIFERLINLIQKQRSYLSLAITEQTHLKDDLAVDSIELVEFIINVEDEFHIAIPDED 61 (80)
T ss_pred HHHHHHHHHHHHHHhCCCccccCCCCcHHHHcCCcHHHHHHHHHHHHHHhCCCCCHHH
Confidence 3568888888988887655566665554 235689999999999863
No 13
>PF04265 TPK_B1_binding: Thiamin pyrophosphokinase, vitamin B1 binding domain; InterPro: IPR007373 Thiamin pyrophosphokinase (TPK, 2.7.6.2 from EC) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamin) to form the coenzyme thiamin pyrophosphate (TPP). Thus, TPK is important for the formation of a coenzyme required for central metabolic functions. The structure of thiamin pyrophosphokinase suggest that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis [].; GO: 0004788 thiamine diphosphokinase activity, 0009229 thiamine diphosphate biosynthetic process; PDB: 3LM8_B 1IG0_A 3CQ9_A 3L8M_B 3IHK_B 3MEL_B 2HH9_A 2F17_B 1IG3_B 2G9Z_A ....
Probab=46.90 E-value=8.9 Score=27.05 Aligned_cols=31 Identities=29% Similarity=0.694 Sum_probs=20.1
Q ss_pred ccEEEeecCcc--ceeeeCCCCCCCceeeEeCcEE
Q 026498 195 GIIRLRDEENL--KFINLFPEEPPLCSIAVTNGVK 227 (237)
Q Consensus 195 G~~~v~~~~~~--r~i~lfP~~~p~c~~a~T~gv~ 227 (237)
|...+..+... +|+|+||-.++.. .++.|.|
T Consensus 1 G~h~i~~~~~~~g~~~Sl~pl~~~~~--vt~~Glk 33 (68)
T PF04265_consen 1 GTHEIKKDEGYEGKYVSLFPLGEPVT--VTIKGLK 33 (68)
T ss_dssp EEEEEE-BTTCCEEEEEEEESSSEEE--EEEESBS
T ss_pred CcEEEEECCCccCCEEEEEECcCCeE--EEEeCCE
Confidence 45566666666 9999999776543 5565554
No 14
>CHL00124 acpP acyl carrier protein; Validated
Probab=45.84 E-value=56 Score=23.41 Aligned_cols=45 Identities=13% Similarity=0.321 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhhChhhHhhcCCCCCHHH------------HHHHHHHcCCCCCHHH
Q 026498 12 RCWDRLKNWLAENFPEAKATLRKGASEAD------------IQQLEKSLKVKLPVPT 56 (237)
Q Consensus 12 ~~W~rie~wL~~~~P~~~~~L~~gate~e------------I~~~E~~lg~~LP~~l 56 (237)
..++++.+.+++.+-.-.+.+.+-.+=.+ +.++|+++|+++|++-
T Consensus 5 ~i~~~l~~ii~~~~~~~~~~i~~d~~l~~dlg~DSl~~~eli~~le~~f~i~i~~~~ 61 (82)
T CHL00124 5 DIFEKVQSIVAEQLGIEKSEVTLDANFTRDLGADSLDVVELVMAIEEKFDIEIPDED 61 (82)
T ss_pred HHHHHHHHHHHHHHCCCHHHCCCCcchhhhcCCcHHHHHHHHHHHHHHHCCccCHHH
Confidence 45778888887765322344555444433 5679999999999854
No 15
>COG0246 MtlD Mannitol-1-phosphate/altronate dehydrogenases [Carbohydrate transport and metabolism]
Probab=41.72 E-value=45 Score=32.85 Aligned_cols=48 Identities=29% Similarity=0.594 Sum_probs=39.7
Q ss_pred hHHHHHHHHHH-HHHHHHhh--Chh-hHhhcCCCCCHHHHHHHHHHcCCCCC
Q 026498 6 LVKRVKRCWDR-LKNWLAEN--FPE-AKATLRKGASEADIQQLEKSLKVKLP 53 (237)
Q Consensus 6 ~~~~v~~~W~r-ie~wL~~~--~P~-~~~~L~~gate~eI~~~E~~lg~~LP 53 (237)
.|.+....|+. +-.|+.+| ||. +.+..-|+.|+++++++++.+|+.=|
T Consensus 185 ~Vl~~a~~~~~~~a~wi~~~v~FpnsmVDRIVP~~t~~~~~~i~~~~g~~D~ 236 (473)
T COG0246 185 AVLRFASEWDLALAAWIEENVGFPNSMVDRIVPATTDDERDEIEDALGVEDP 236 (473)
T ss_pred HHHHHHHhhhhHHHHHHHhcCCCCcccccccCCCCChHHHHHHHHHhcCCCc
Confidence 35667778854 88999998 787 66999999999999999999997443
No 16
>PF03213 Pox_P35: Poxvirus P35 protein; InterPro: IPR004900 The Poxvirus P35 protein is an immunodominant envelope protein. It binds to heparan sulphate on the cell surface to provide virion attachment to target cell [].; GO: 0019031 viral envelope
Probab=40.91 E-value=20 Score=33.52 Aligned_cols=25 Identities=40% Similarity=0.729 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhhChhhHhhcCCCC
Q 026498 12 RCWDRLKNWLAENFPEAKATLRKGA 36 (237)
Q Consensus 12 ~~W~rie~wL~~~~P~~~~~L~~ga 36 (237)
..|.||.+||+.|+|.....|--|.
T Consensus 256 ~~wsrl~~Wla~~~P~~~y~lttPL 280 (325)
T PF03213_consen 256 SIWSRLGKWLAKRFPGAYYFLTTPL 280 (325)
T ss_pred hHHHHHHHHHHhhCCCchhhhhchH
Confidence 6899999999999998887665543
No 17
>TIGR00517 acyl_carrier acyl carrier protein. S (Ser) at position 37 in the seed alignment, in the motif DSLD, is the phosphopantetheine attachment site.
Probab=40.90 E-value=63 Score=22.84 Aligned_cols=45 Identities=16% Similarity=0.299 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhhChhhHhhcCCCCCH------------HHHHHHHHHcCCCCCHHH
Q 026498 12 RCWDRLKNWLAENFPEAKATLRKGASE------------ADIQQLEKSLKVKLPVPT 56 (237)
Q Consensus 12 ~~W~rie~wL~~~~P~~~~~L~~gate------------~eI~~~E~~lg~~LP~~l 56 (237)
...++|.+.+++.+---...+.+-++- +=+.++|+++|+++|++-
T Consensus 3 ~i~~~l~~il~~~~~~~~~~i~~~~~l~~dlglDSl~~veli~~lE~~f~i~i~~~~ 59 (77)
T TIGR00517 3 EIFEKVKAIIKEQLNVDEDQVTPDASFVEDLGADSLDTVELVMALEEEFDIEIPDEE 59 (77)
T ss_pred HHHHHHHHHHHHHHCCCHHHCCCCcchhhhcCCcHHHHHHHHHHHHHHHCCCCCHHH
Confidence 456777777877653223344444432 235679999999999874
No 18
>PF11829 DUF3349: Protein of unknown function (DUF3349); InterPro: IPR021784 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 99 to 124 amino acids in length. ; PDB: 2KVC_A 3OL3_B 3OL4_A 2LKY_A.
Probab=39.31 E-value=69 Score=24.80 Aligned_cols=39 Identities=21% Similarity=0.515 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHhhChh---------hHhhcCCCCCHHHHHHHHHHc
Q 026498 10 VKRCWDRLKNWLAENFPE---------AKATLRKGASEADIQQLEKSL 48 (237)
Q Consensus 10 v~~~W~rie~wL~~~~P~---------~~~~L~~gate~eI~~~E~~l 48 (237)
|.....+|-+||+.=+|+ +.+.|..-.|++||.++=++|
T Consensus 1 ~~~~l~~iv~WLRaGYP~GvP~~Dy~PLlALL~r~Ltd~ev~~Va~~L 48 (96)
T PF11829_consen 1 MPSFLASIVDWLRAGYPEGVPPTDYVPLLALLRRRLTDDEVAEVAAEL 48 (96)
T ss_dssp HHHHHHHHHHHHHHH-TT-B-HHHHHHHHHHHTTTS-HHHHHHHHHHH
T ss_pred CChHHHHHHHHHHccCCCCCCCCccHHHHHHhcccCCHHHHHHHHHHH
Confidence 456788999999999985 446788888999998876654
No 19
>PF08060 NOSIC: NOSIC (NUC001) domain; InterPro: IPR012976 This is the central domain in Nop56/SIK1-like proteins [].; PDB: 3PLA_K 3ICX_B 3ID6_A 3ID5_E 3NVM_A 3NMU_B 2NNW_C 3NVI_A 3NVK_A 2OZB_E ....
Probab=38.78 E-value=31 Score=23.41 Aligned_cols=29 Identities=24% Similarity=0.457 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHhhChhhHhhcCCC
Q 026498 7 VKRVKRCWDRLKNWLAENFPEAKATLRKG 35 (237)
Q Consensus 7 ~~~v~~~W~rie~wL~~~~P~~~~~L~~g 35 (237)
-+.+...=.|++.|-..||||+...+..+
T Consensus 13 d~ei~~~~~~lre~Y~~~FPEL~~lv~~~ 41 (53)
T PF08060_consen 13 DKEINLLHMRLREWYSWHFPELESLVPNP 41 (53)
T ss_dssp HHHHHHHHHHHHHHHTTTSTTHHHHS-SH
T ss_pred HHHHHHHHHHHHHHHHccchhHHHHcCCH
Confidence 35667778899999999999998766543
No 20
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=37.98 E-value=68 Score=26.11 Aligned_cols=42 Identities=24% Similarity=0.392 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHhhChhhHhhcCCCCCHHHHHHHHHHcC
Q 026498 7 VKRVKRCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLK 49 (237)
Q Consensus 7 ~~~v~~~W~rie~wL~~~~P~~~~~L~~gate~eI~~~E~~lg 49 (237)
-.++...|+++|.-+.+..-.....|+-| |..||+++++++.
T Consensus 78 ~~~~~~~~dklE~~fd~rV~~aL~rLgvP-s~~dv~~L~~rId 119 (132)
T PF05597_consen 78 KERATGQWDKLEQAFDERVARALNRLGVP-SRKDVEALSARID 119 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHH
Confidence 35788899999999999988888888887 5779999988764
No 21
>TIGR02336 1,3-beta-galactosyl-N-acetylhexosamine phosphorylase. Members of this family are found in phylogenetically diverse bacteria, including Clostridium perfringens (in the Firmicutes), Bifidobacterium longum and Propionibacterium acnes (in the Actinobacteria), and Vibrio vulnificus (in the Proteobacteria), most of which occur as mammalian pathogens or commensals. The nominal activity, 1,3-beta-galactosyl-N-acetylhexosamine phosphorylase (EC 2.4.1.211), varies somewhat from instance to instance in relative rates for closely related substrates.
Probab=34.25 E-value=66 Score=33.18 Aligned_cols=46 Identities=20% Similarity=0.367 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHhhChhhH------------------------hh--cCCCCCHHHHHHHHHHcCCCCCHH
Q 026498 9 RVKRCWDRLKNWLAENFPEAK------------------------AT--LRKGASEADIQQLEKSLKVKLPVP 55 (237)
Q Consensus 9 ~v~~~W~rie~wL~~~~P~~~------------------------~~--L~~gate~eI~~~E~~lg~~LP~~ 55 (237)
+=+.+-+++++||++| |+.. +- -...+|..-|++||++.|++|-++
T Consensus 187 t~~~~~~~l~~wl~~~-p~~dVvRfTTfFy~Ftl~f~~~~kek~vDWfgY~~sVSp~ale~Fe~e~GY~l~pE 258 (719)
T TIGR02336 187 TRKHVFDTFEQWLKDS-PQTDVVRFTTFFYQFTLLFDEKRREKVVDWFGYACTVSPRALEDFEAKYGYKLRPE 258 (719)
T ss_pred HHHHHHHHHHHHHHhC-CCCcEEEEeeeeeeEeEEeccccccceeeccCcccccCHHHHHHHHHHhCCCCCHH
Confidence 3456678899999998 5432 11 255678999999999999999554
No 22
>smart00431 SCAN leucine rich region.
Probab=31.10 E-value=1.1e+02 Score=24.40 Aligned_cols=48 Identities=25% Similarity=0.405 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHhhChhhHhhcCCCCCHHHH---HHHHHHcCCCCCHHHHHHhHHhCCC
Q 026498 8 KRVKRCWDRLKNWLAENFPEAKATLRKGASEADI---QQLEKSLKVKLPVPTRILYRFCDGQ 66 (237)
Q Consensus 8 ~~v~~~W~rie~wL~~~~P~~~~~L~~gate~eI---~~~E~~lg~~LP~~lr~lyr~hnGq 66 (237)
..+.++|+-...||+ |++. |.++| -.+|.-|++ ||.++++.-|.|.=+
T Consensus 21 eaL~~L~eLc~~WLr---Pe~~-------tKeqilElLVlEQFL~i-lP~e~q~wv~~~~p~ 71 (113)
T smart00431 21 EALSRLRELCRQWLR---PELH-------TKEQILELLVLEQFLTI-LPGELQAWVREHHPE 71 (113)
T ss_pred HHHHHHHHHHHhhcC---hhhh-------hHHHHHHHHHHHHHhcc-CcHHHHHHHHhcCCC
Confidence 456677888889998 7776 77766 446777888 999999998776433
No 23
>PF08828 DSX_dimer: Doublesex dimerisation domain; InterPro: IPR014932 Doublesex (DSX) is a transcription factor that regulates somatic sexual differences in Drosophila. The structure has revealed a novel dimeric arrangement of ubiquitin-associated folds that has not previously been identified in a transcription factor []. ; PDB: 1ZV1_B 2JZ0_A 2JZ1_B.
Probab=30.40 E-value=47 Score=23.69 Aligned_cols=18 Identities=28% Similarity=0.768 Sum_probs=11.3
Q ss_pred CCChhHHH-----------HHHHHHHHHH
Q 026498 2 YPWPLVKR-----------VKRCWDRLKN 19 (237)
Q Consensus 2 y~~~~~~~-----------v~~~W~rie~ 19 (237)
|||.|.+- +..+++||++
T Consensus 19 YpWEmmpLmyVILK~A~~D~eeA~rrI~E 47 (62)
T PF08828_consen 19 YPWEMMPLMYVILKYADADVEEASRRIDE 47 (62)
T ss_dssp --GGGHHHHHHHHHHTTT-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 89988763 4677777765
No 24
>PRK05350 acyl carrier protein; Provisional
Probab=28.91 E-value=1.5e+02 Score=21.28 Aligned_cols=44 Identities=20% Similarity=0.185 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhhChhhHhhcCCCCCH------------HHHHHHHHHcCCCCCHH
Q 026498 12 RCWDRLKNWLAENFPEAKATLRKGASE------------ADIQQLEKSLKVKLPVP 55 (237)
Q Consensus 12 ~~W~rie~wL~~~~P~~~~~L~~gate------------~eI~~~E~~lg~~LP~~ 55 (237)
...++|.+.+++.+..-...+.+-++- +=+.++|.++|+++|++
T Consensus 6 ~i~~~v~~ii~~~~~~~~~~i~~d~~l~~dlg~DSld~veli~~lE~~fgI~i~~~ 61 (82)
T PRK05350 6 EILERLRAILVELFEIDPEDITPEANLYEDLDLDSIDAVDLVVHLQKLTGKKIKPE 61 (82)
T ss_pred HHHHHHHHHHHHHhCCCHHHCCCCccchhhcCCCHHHHHHHHHHHHHHHCCccCHH
Confidence 456677777777653222445555441 23567999999999975
No 25
>PF10691 DUF2497: Protein of unknown function (DUF2497) ; InterPro: IPR019632 Members of this family belong to the Alphaproteobacteria. The function of the family is not known.
Probab=27.96 E-value=36 Score=24.99 Aligned_cols=16 Identities=44% Similarity=0.779 Sum_probs=12.9
Q ss_pred HHHHHHHhhChhhHhh
Q 026498 16 RLKNWLAENFPEAKAT 31 (237)
Q Consensus 16 rie~wL~~~~P~~~~~ 31 (237)
-|++||.+|.|.+...
T Consensus 46 mLkeWLD~nLP~lVEr 61 (73)
T PF10691_consen 46 MLKEWLDENLPGLVER 61 (73)
T ss_pred HHHHHHHhccHHHHHH
Confidence 3789999999987643
No 26
>COG3825 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.91 E-value=82 Score=29.76 Aligned_cols=51 Identities=18% Similarity=0.171 Sum_probs=36.7
Q ss_pred HHHHHHHHHhhChh--hHhhcCCCCCHHHHHHHHHHcCC-CCCHHHHHHhHHhC
Q 026498 14 WDRLKNWLAENFPE--AKATLRKGASEADIQQLEKSLKV-KLPVPTRILYRFCD 64 (237)
Q Consensus 14 W~rie~wL~~~~P~--~~~~L~~gate~eI~~~E~~lg~-~LP~~lr~lyr~hn 64 (237)
|+.++.||...-|+ +...++.=.|+++.+++|+.-|+ +||+.|++...-.-
T Consensus 69 ~E~l~d~l~a~ip~ewl~~~~er~ltdeekaq~eAlggi~kl~Etl~e~leeq~ 122 (393)
T COG3825 69 LEDLKDRLWAKIPEEWLRKIFERVLTDEEKAQVEALGGIDKLMETLKERLEEQK 122 (393)
T ss_pred HHHhccchhccChHHHHHHHHHHhcCHHHHHHHHHhcCcchhHHHHHHhHHHhh
Confidence 55555555444444 33445556699999999999888 89999999997543
No 27
>PF09508 Lact_bio_phlase: Lacto-N-biose phosphorylase; InterPro: IPR012711 The gene which codes for this protein in gut-bacteria is located in a novel putative operon for galactose metabolism. The protein appears to be a carbohydrate-processing phosphorolytic enzyme (2.4.1.211 from EC), unlike either glycoside hydrolases or glycoside lyase. Intestinal colonisation by Bifidobacteria is important for human health, especially in paediatrics, because colonisation seems to prevent infection by some pathogenic bacteria that cause diarrhoea or other illnesses. The operon seems to be involved in intestinal colonisation by Bifidobacteria mediated by metabolism of mucin sugars. In addition, it may also resolve the question of the nature of the bifidus factor in human milk as the lacto-N-biose structure found in milk oligosaccharides. ; GO: 0016758 transferase activity, transferring hexosyl groups; PDB: 2ZUW_A 2ZUU_C 2ZUT_D 2ZUV_A 2ZUS_B.
Probab=27.52 E-value=74 Score=32.74 Aligned_cols=45 Identities=24% Similarity=0.441 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHhhChhhH----hh----------------------cCCCCCHHHHHHHHHHcCCCCCHH
Q 026498 10 VKRCWDRLKNWLAENFPEAK----AT----------------------LRKGASEADIQQLEKSLKVKLPVP 55 (237)
Q Consensus 10 v~~~W~rie~wL~~~~P~~~----~~----------------------L~~gate~eI~~~E~~lg~~LP~~ 55 (237)
=+..-++|++||++| |+.. -| -...+|+.-|++||++.|++|-++
T Consensus 185 ~~~~~~~L~~wl~~h-P~~dVVRFTTFFy~Ftl~f~~~~kekfvDWfGY~asVSp~aLe~FEke~GY~lrpE 255 (716)
T PF09508_consen 185 REYVLEWLRKWLEEH-PDTDVVRFTTFFYQFTLIFNEDAKEKFVDWFGYSASVSPYALEQFEKEYGYRLRPE 255 (716)
T ss_dssp HHHHHHHHHHHHHT--TT--EEEES--SB--EEEEBTTSSEEEEETT--GGGB-HHHHHHHHHHHSS---TH
T ss_pred HHHHHHHHHHHHHHC-CCCcEEEeeeeeeeeEEEeccccccccccccCcCcccCHHHHHHHHHHhCCCCCHH
Confidence 345667899999998 6543 11 245678999999999999999444
No 28
>TIGR01159 DRP1 density-regulated protein DRP1. This protein family shows weak but suggestive similarity to translation initiation factor SUI1 and its prokaryotic homologs.
Probab=27.41 E-value=58 Score=27.78 Aligned_cols=23 Identities=39% Similarity=0.504 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhhChhhHhhcCCC
Q 026498 13 CWDRLKNWLAENFPEAKATLRKG 35 (237)
Q Consensus 13 ~W~rie~wL~~~~P~~~~~L~~g 35 (237)
.|++=+.||.+|+|+++..|...
T Consensus 22 ~~~kCk~WL~~n~p~l~~~l~~~ 44 (173)
T TIGR01159 22 DLKRCKVWLSENAPDLYAKLYGT 44 (173)
T ss_pred CHHHHHHHHHHhChHHHHHHhhc
Confidence 47888999999999999887543
No 29
>cd07995 TPK Thiamine pyrophosphokinase. Thiamine pyrophosphokinase (TPK, EC:2.7.6.2, also spelled thiamin pyrophosphokinase) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamine) to form the coenzyme thiamine pyrophosphate (TPP). TPP is required for central metabolic functions, and thiamine deficiency is associated with potentially fatal human diseases. The structure of thiamine pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis.
Probab=25.85 E-value=60 Score=27.75 Aligned_cols=33 Identities=27% Similarity=0.280 Sum_probs=23.5
Q ss_pred hcccEEEeecCccceeeeCCCCCCCceeeEeCcEE
Q 026498 193 HNGIIRLRDEENLKFINLFPEEPPLCSIAVTNGVK 227 (237)
Q Consensus 193 ~~G~~~v~~~~~~r~i~lfP~~~p~c~~a~T~gv~ 227 (237)
..|.+.+......+++|+||-.++ + ..+|.|.|
T Consensus 137 ~~g~~~i~~~~~~~~~Sl~pl~~~-~-~vt~~Glk 169 (208)
T cd07995 137 LPGSHTLELEEEGKYVSLIPLGEV-T-GLTLKGLK 169 (208)
T ss_pred cCCCEEEeecCCCCEEEEEeccCC-c-ceEEeCCE
Confidence 357777766546899999999988 3 45566655
No 30
>PRK07639 acyl carrier protein; Provisional
Probab=25.39 E-value=1.3e+02 Score=22.26 Aligned_cols=43 Identities=14% Similarity=0.123 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhhChhhH-hhcCCCCC------------HHHHHHHHHHcCCCCCHH
Q 026498 13 CWDRLKNWLAENFPEAK-ATLRKGAS------------EADIQQLEKSLKVKLPVP 55 (237)
Q Consensus 13 ~W~rie~wL~~~~P~~~-~~L~~gat------------e~eI~~~E~~lg~~LP~~ 55 (237)
+-++|++-|++.++.-. +.+.+.+. -+=+.++|.++|+++|++
T Consensus 6 i~~~i~~il~e~l~~~~~~~i~~d~~l~edL~lDSld~velv~~lE~~fgi~i~d~ 61 (86)
T PRK07639 6 LKNAVLKIMEEKLELKNVTHLEETMRLNEDLYIDSVMMLQLIVYIEMDVKLCVPED 61 (86)
T ss_pred HHHHHHHHHHHHhCCCccccCCCCCCcccccCCChHHHHHHHHHHHHHHCCccCHH
Confidence 46778888888876422 33433332 234667999999999987
No 31
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=24.72 E-value=1.5e+02 Score=23.41 Aligned_cols=38 Identities=26% Similarity=0.478 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHhhChhhHhhcCCCCCHHHHHHHHHHcC
Q 026498 11 KRCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLK 49 (237)
Q Consensus 11 ~~~W~rie~wL~~~~P~~~~~L~~gate~eI~~~E~~lg 49 (237)
...|++++.-+.+..-.+...|+-| |.+||+++++++.
T Consensus 69 ~~~~~~le~~~~~~v~~~L~~lg~~-tk~ev~~L~~RI~ 106 (118)
T TIGR01837 69 QRNWDKLEKAFDERVEQALNRLNIP-SREEIEALSAKIE 106 (118)
T ss_pred HhhHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH
Confidence 4679999998888887777777654 7779999888764
No 32
>PRK15037 D-mannonate oxidoreductase; Provisional
Probab=24.68 E-value=90 Score=30.79 Aligned_cols=40 Identities=28% Similarity=0.499 Sum_probs=33.1
Q ss_pred HHHHHHHHhh--Chh-hHhhcCCCCCHHHHHHHHHHcCCCCCH
Q 026498 15 DRLKNWLAEN--FPE-AKATLRKGASEADIQQLEKSLKVKLPV 54 (237)
Q Consensus 15 ~rie~wL~~~--~P~-~~~~L~~gate~eI~~~E~~lg~~LP~ 54 (237)
..+.+|+.+| ||. +.+..-|+.++++++++++.+|+.=+-
T Consensus 208 ~~~~~wi~~~v~FpnsmVDRIvP~~~~~~~~~~~~~~G~~D~~ 250 (486)
T PRK15037 208 PQLAAWIEENVTFPCTMVDRIVPAATPETLQEIADQLGVYDPC 250 (486)
T ss_pred HHHHHHHHhcCccCccccccCCCCCCHHHHHHHHHHhCCCccc
Confidence 4678899988 676 558889999999999999999986443
No 33
>PF10076 DUF2313: Uncharacterized protein conserved in bacteria (DUF2313); InterPro: IPR018755 Members of this family of proteins comprise various hypothetical and putative bacteriophage tail proteins, including Gp48 from Bacteriophage Mu and other Mu-like prophages such as FluMu.
Probab=24.34 E-value=1.2e+02 Score=25.07 Aligned_cols=37 Identities=24% Similarity=0.386 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHhhChhhHhhcCCCCCHHHHHHHHHHcCCCC
Q 026498 8 KRVKRCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKL 52 (237)
Q Consensus 8 ~~v~~~W~rie~wL~~~~P~~~~~L~~gate~eI~~~E~~lg~~L 52 (237)
+.+.++|++++.-+.+.+|... + .-|...|+.||++-
T Consensus 29 ~el~~~~~~~~~l~~e~f~~Ta-------t-~~L~~wE~~lgi~~ 65 (179)
T PF10076_consen 29 PELDRLDDRADDLLDEQFPSTA-------T-WGLPRWERMLGIPP 65 (179)
T ss_pred HHHHHHHHHHHHHHHcCCHHHH-------H-HHHHHHHHHcCCCC
Confidence 4566778888888888888655 5 88999999999765
No 34
>PF14331 ImcF-related_N: ImcF-related N-terminal domain
Probab=23.89 E-value=1.3e+02 Score=26.81 Aligned_cols=46 Identities=22% Similarity=0.460 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHhhChh-----------hHhhcCCCCC-----------HHHHHHHHHHcCCCCCH
Q 026498 9 RVKRCWDRLKNWLAENFPE-----------AKATLRKGAS-----------EADIQQLEKSLKVKLPV 54 (237)
Q Consensus 9 ~v~~~W~rie~wL~~~~P~-----------~~~~L~~gat-----------e~eI~~~E~~lg~~LP~ 54 (237)
.=+..|+.+=.||+++.|. +.+.++.... -+.|+++...||+.+|-
T Consensus 5 ~d~~~W~~~L~lL~~~R~r~PlnGvil~vs~~~Ll~~~~~~r~l~~~a~~lR~rL~el~~~lg~~~PV 72 (266)
T PF14331_consen 5 EDAAEWQAFLDLLRRHRPRQPLNGVILTVSVDDLLNADEAERELEALARALRQRLEELQRTLGVRLPV 72 (266)
T ss_pred hHHHHHHHHHHHHHhcCCCCCCCEEEEEEEHHHHhcCChhhhHHHHHHHHHHHHHHHHHHHhCCCCCe
Confidence 3467899999999999884 2234455433 24688899999999983
No 35
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=23.82 E-value=75 Score=17.80 Aligned_cols=12 Identities=42% Similarity=0.827 Sum_probs=9.3
Q ss_pred cCCCeeEEeeec
Q 026498 139 CTNGQLYVGTKN 150 (237)
Q Consensus 139 ~~~G~l~vg~~n 150 (237)
..+|.+++||.|
T Consensus 13 D~~G~lWigT~~ 24 (24)
T PF07494_consen 13 DSDGNLWIGTYN 24 (24)
T ss_dssp -TTSCEEEEETS
T ss_pred cCCcCEEEEeCC
Confidence 368999999964
No 36
>PRK07117 acyl carrier protein; Validated
Probab=21.54 E-value=2.8e+02 Score=20.19 Aligned_cols=45 Identities=27% Similarity=0.457 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhhChhhH-hhcCC-------CCCHHH----HHHHHHHcCCCCCHHH
Q 026498 12 RCWDRLKNWLAENFPEAK-ATLRK-------GASEAD----IQQLEKSLKVKLPVPT 56 (237)
Q Consensus 12 ~~W~rie~wL~~~~P~~~-~~L~~-------gate~e----I~~~E~~lg~~LP~~l 56 (237)
..-++|++-+.+.+|++. +.+.+ |+..-+ +.++|.++|+++|++=
T Consensus 5 ei~~~v~~ii~e~~p~i~~~~I~~~~~l~DLg~DSlD~veiv~~led~f~i~I~~~~ 61 (79)
T PRK07117 5 RIFDILVRHIREVLPDLDQHQFQPEDSLVDLGANSMDRAEIVIMTLESLSLKIPLVE 61 (79)
T ss_pred HHHHHHHHHHHHHcCCCCHHHCCCCCChhhcCCChHHHHHHHHHHHHHHCCccCHHH
Confidence 467889999999998433 34444 333322 4568999999999764
No 37
>PHA02130 hypothetical protein
Probab=20.78 E-value=75 Score=23.15 Aligned_cols=17 Identities=35% Similarity=1.015 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHhhChhh
Q 026498 12 RCWDRLKNWLAENFPEA 28 (237)
Q Consensus 12 ~~W~rie~wL~~~~P~~ 28 (237)
+.|+.++.||.+++-..
T Consensus 14 ks~~sl~~wl~~~~dsw 30 (81)
T PHA02130 14 KSWESLREWLDERFDSW 30 (81)
T ss_pred HHHHHHHHHHHhccccc
Confidence 56999999999998743
No 38
>PF11332 DUF3134: Protein of unknown function (DUF3134); InterPro: IPR021481 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=20.67 E-value=61 Score=23.88 Aligned_cols=17 Identities=41% Similarity=0.847 Sum_probs=13.3
Q ss_pred cccchHHHHHHHHhhhh
Q 026498 176 QQQDGMLLWLEEHGRRL 192 (237)
Q Consensus 176 ~~~ds~~~WLe~~~~~L 192 (237)
.+..|++.||+.-.|=+
T Consensus 19 ~~e~SlLdWLe~tGRLi 35 (73)
T PF11332_consen 19 KQESSLLDWLESTGRLI 35 (73)
T ss_pred CCccHHHHHHHHcCCcc
Confidence 66789999999865544
Done!