Query 026498
Match_columns 237
No_of_seqs 160 out of 280
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 15:00:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026498.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026498hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3d5p_A Putative glucan synthes 99.1 6.9E-10 2.4E-14 89.4 10.7 117 31-188 10-126 (144)
2 2icg_A LIN2918 protein; hypoth 99.0 6.4E-09 2.2E-13 84.6 12.5 142 12-190 5-153 (160)
3 2prv_A Uncharacterized protein 99.0 8.5E-09 2.9E-13 83.6 13.0 118 30-191 18-140 (153)
4 2pag_A Hypothetical protein; n 98.5 8.2E-07 2.8E-11 71.1 11.2 110 33-188 19-131 (135)
5 3ffv_A Protein SYD; membrane, 88.7 2.4 8.1E-05 35.3 8.9 114 37-188 58-177 (181)
6 3ol3_A Putative uncharacterize 50.8 19 0.00063 27.4 4.2 46 3-48 2-56 (107)
7 1fad_A Protein (FADD protein); 37.2 76 0.0026 22.6 5.8 47 6-54 9-55 (99)
8 2kvc_A Putative uncharacterize 33.8 66 0.0023 24.1 4.9 39 10-48 4-51 (103)
9 2qsr_A Transcription-repair co 30.4 46 0.0016 26.8 3.9 36 27-63 32-71 (173)
10 4dxe_H ACP, acyl carrier prote 29.7 67 0.0023 23.2 4.4 44 13-56 27-82 (101)
11 2lky_A Uncharacterized protein 25.3 96 0.0033 23.6 4.5 37 12-48 8-53 (112)
12 3mel_A Thiamin pyrophosphokina 24.8 29 0.001 29.1 1.8 33 193-227 141-173 (222)
13 2zuv_A Lacto-N-biose phosphory 24.4 58 0.002 32.4 3.9 47 9-56 188-260 (759)
14 3gr0_A Protein PRGH; type III 21.5 43 0.0015 27.9 2.1 40 10-49 60-115 (197)
15 1f80_D Acyl carrier protein; t 21.4 1.6E+02 0.0055 19.3 4.8 43 14-56 9-63 (81)
No 1
>3d5p_A Putative glucan synthesis regulator of SMI1/KNR4; STR genomics, joint center for structural genomics, JCSG; HET: MSE; 1.45A {Bacteroides fragilis nctc 9343}
Probab=99.08 E-value=6.9e-10 Score=89.39 Aligned_cols=117 Identities=16% Similarity=0.251 Sum_probs=80.4
Q ss_pred hcCCCCCHHHHHHHHHHcCCCCCHHHHHHhHHhCCCcCcCCCcccccccccccceeeccceeeeeecChHHHHHHHHHHH
Q 026498 31 TLRKGASEADIQQLEKSLKVKLPVPTRILYRFCDGQECQTDDFESIGAMGLIGGYSFYGHLVNVYLIPLSHIIMETKEIR 110 (237)
Q Consensus 31 ~L~~gate~eI~~~E~~lg~~LP~~lr~lyr~hnGq~~~~~~~~~~~~~Gl~gg~~~y~~~~~~~LLpL~~i~~~~~~~r 110 (237)
.+++|||+++|+++|++||++||+++|+||+.|||..... | + . -..+++++++++.+..++
T Consensus 10 ~~~~~~s~~~I~~~E~~lgi~lP~~Yk~fl~~~NGg~~~~---------~---~-~------~~~l~~~~~i~e~n~~~~ 70 (144)
T 3d5p_A 10 YKKDGASSASIDDVEKLLNTTLPKQYKSFLLWSNGGEGKL---------G---D-N------YIYIWAIEDVIAYNHDYG 70 (144)
T ss_dssp EECCCCCHHHHHHHHHHHTSCCCHHHHHHHHHCSSEEEEE---------T---T-E------EEEECCHHHHHHHHHHHT
T ss_pred ccCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHhCCCcccC---------C---C-c------eeEeeCHHHHHHHHHHhh
Confidence 5789999999999999999999999999999999986541 1 1 0 035788999988776665
Q ss_pred hhcCCCCCCeeeEEEeccCCCcceEEEecCCCeeEEeeeccCCCCcccccCccchhcccCCCCCCcccchHHHHHHHH
Q 026498 111 RHLDFPGRDKYVVVAFSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEMIPCVPNALIALGHGCNSDQQQDGMLLWLEEH 188 (237)
Q Consensus 111 ~~~~~~g~~~~i~~~as~~~~~~~~~ld~~~G~l~vg~~n~~~~G~~~pcvp~~~i~~~~d~~~~~~~ds~~~WLe~~ 188 (237)
..... +..+++++.... ..+.+|.+++++|.--. ++. . + ......|+||.+||+..
T Consensus 71 ~~~~~--p~~~i~i~~D~g---~~~~~d~~~~~V~~~d~----~~~--~--~---------~~~~~iA~sF~eFL~~~ 126 (144)
T 3d5p_A 71 IQKYL--QKEYWAFGMDGD---IGYILHLSDNSIYRVDL----GDL--D--I---------TSIKYIAPSFDDFLGKA 126 (144)
T ss_dssp HHHHS--CTTEEEEEEETT---EEEEEETTTCCEEEEET----TSC--C--G---------GGCEEEESSHHHHHHHH
T ss_pred hhhhc--CCCEEEEEEcCC---eEEEECCCCCEEEEEEC----CCC--C--h---------hhheeHhhCHHHHHHHH
Confidence 43322 344788776432 45666766677664211 000 0 0 02346799999999864
No 2
>2icg_A LIN2918 protein; hypothetical protein, structural genomics, PSI- protein structure initiative, joint center for structural G JCSG; 1.65A {Listeria innocua} SCOP: d.369.1.1
Probab=98.98 E-value=6.4e-09 Score=84.62 Aligned_cols=142 Identities=11% Similarity=0.135 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHhhChhhHhhcCCCCCHHHHHHHHHHcCCCCCHHHHHHhHHhCCCcCcCCCcccccccccccceeeccce
Q 026498 12 RCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILYRFCDGQECQTDDFESIGAMGLIGGYSFYGHL 91 (237)
Q Consensus 12 ~~W~rie~wL~~~~P~~~~~L~~gate~eI~~~E~~lg~~LP~~lr~lyr~hnGq~~~~~~~~~~~~~Gl~gg~~~y~~~ 91 (237)
..-++|++.+.++- + ...+.+|+|+++|+++|+.||++||++||.+++.+||.... |..+|+..
T Consensus 5 ~~~~~i~~~i~~~~-~-~~~~~~~~s~~~I~~~E~~Lgi~lP~~Yk~fL~~~~gg~~~--------------g~~i~~i~ 68 (160)
T 2icg_A 5 SFLEEVDRLITLSG-I-TFHASGTGTPELIKIYQDALGNEFPETYKLFLEKYGTLTFN--------------GVSFYGIS 68 (160)
T ss_dssp HHHHHHHHHHHHCC-S-CCBCCCCCCHHHHHHHHHHHTCCCCHHHHHHHHHTSSEEET--------------TEEECBCC
T ss_pred HHHHHHHHHHHHcc-c-ccccCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHhCCcccC--------------ceeeeeec
Confidence 44567777776543 2 23567899999999999999999999999999999987542 11111111
Q ss_pred e-eeeecChHHHHHHHHHHHhhcCCCCCCeeeEEEeccCCCcceEEEecC------CCeeEEeeeccCCCCcccccCccc
Q 026498 92 V-NVYLIPLSHIIMETKEIRRHLDFPGRDKYVVVAFSSTYSEKFFFLNCT------NGQLYVGTKNLLSDGEMIPCVPNA 164 (237)
Q Consensus 92 ~-~~~LLpL~~i~~~~~~~r~~~~~~g~~~~i~~~as~~~~~~~~~ld~~------~G~l~vg~~n~~~~G~~~pcvp~~ 164 (237)
. .....+...++..+..+|..... +..+++++.+. .+.++++|.+ ++.+|.-- ++
T Consensus 69 ~~~~~~~~~~~i~~~~~~~~~~~~~--p~~~i~i~~~~--~G~~~~ld~~~~~~~~e~~V~~~d-------------~~- 130 (160)
T 2icg_A 69 KRGLSAASIPDVKFATEQARTFGDI--NKEMIMIKNSG--YGSIFSIDTSIIGSEGEPVIVETN-------------LS- 130 (160)
T ss_dssp TTGGGCCSTTBHHHHHHHHHHHTSS--CTTEEEEEECS--TTCEEEEEEEEECTTSSEEEEEEC-------------TT-
T ss_pred cCCcccCCCccchhhhHHHHHhcCC--CCCEEEEEecC--CCCEEEEEecccCCCCCCeEEEEE-------------Cc-
Confidence 1 01112334567777777765444 45678887643 3478888875 23333211 10
Q ss_pred hhcccCCCCCCcccchHHHHHHHHhh
Q 026498 165 LIALGHGCNSDQQQDGMLLWLEEHGR 190 (237)
Q Consensus 165 ~i~~~~d~~~~~~~ds~~~WLe~~~~ 190 (237)
..|+.+....++||.+||++...
T Consensus 131 ---~~~~~~~~~ia~sF~efL~~l~~ 153 (160)
T 2icg_A 131 ---FKDNTEKKVVANSFGEFLLEEIE 153 (160)
T ss_dssp ---HHHHCCCEEEESSHHHHHHHHHH
T ss_pred ---ccCCCCcEEEeCCHHHHHHHHHH
Confidence 00111114679999999987654
No 3
>2prv_A Uncharacterized protein YOBK; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.30A {Bacillus subtilis} SCOP: d.369.1.1
Probab=98.97 E-value=8.5e-09 Score=83.58 Aligned_cols=118 Identities=18% Similarity=0.242 Sum_probs=79.0
Q ss_pred hhcCCCCCHHHHHHHHHHcCCCCCHHHHHHhHHhCCCcCcCCCcccccccccccceeeccceeeeeecChHHHHHHHHHH
Q 026498 30 ATLRKGASEADIQQLEKSLKVKLPVPTRILYRFCDGQECQTDDFESIGAMGLIGGYSFYGHLVNVYLIPLSHIIMETKEI 109 (237)
Q Consensus 30 ~~L~~gate~eI~~~E~~lg~~LP~~lr~lyr~hnGq~~~~~~~~~~~~~Gl~gg~~~y~~~~~~~LLpL~~i~~~~~~~ 109 (237)
....+|+|+++|+++|+.||++||.+||.|++.+||.... |..+|+..... ..++..+..+
T Consensus 18 ~~~~~~~see~I~~~E~~Lgi~lP~dYk~fLk~~ngg~~~--------------~~~i~~i~~~~-----~~i~~~~~~~ 78 (153)
T 2prv_A 18 AIFTEGASHENIGRIEENLQCDLPNSYKWFLEKYGAGGLF--------------GVLVLGYNFDH-----ASVVNRTNEY 78 (153)
T ss_dssp CEECCCCCHHHHHHHHHHHTSCCCHHHHHHHHHHCSEEET--------------TEEECCCCSSS-----CHHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHhCCceec--------------eEEEEeccCCC-----ccHHHHHHHH
Confidence 4567899999999999999999999999999999997642 22222211111 4566667777
Q ss_pred HhhcCCCCCCeeeEEEeccCCCcceEEEecC-----CCeeEEeeeccCCCCcccccCccchhcccCCCCCCcccchHHHH
Q 026498 110 RRHLDFPGRDKYVVVAFSSTYSEKFFFLNCT-----NGQLYVGTKNLLSDGEMIPCVPNALIALGHGCNSDQQQDGMLLW 184 (237)
Q Consensus 110 r~~~~~~g~~~~i~~~as~~~~~~~~~ld~~-----~G~l~vg~~n~~~~G~~~pcvp~~~i~~~~d~~~~~~~ds~~~W 184 (237)
|..... +..+++++. .++.++++|.+ ++.+|+ .+. ..+ .....|+||.+|
T Consensus 79 ~~~~~~--p~~~i~i~~---~g~~~~~ld~~~~~~~~~pv~~-wd~--~~~-----------------~~~~iA~sF~ef 133 (153)
T 2prv_A 79 KEHYGL--TDGLVVIED---VDYFAYCLDTNKMKDGECPVVE-WDR--VIG-----------------YQDTVADSFIEF 133 (153)
T ss_dssp HHHSCC--CTTEEEEEE---CSSEEEEEETTSCBTTBCCEEE-EET--TTE-----------------EEEEEESSHHHH
T ss_pred HHhcCC--CCcEEEEec---CCCcEEEEeccccCCCCCCEEE-EEc--cCC-----------------ceEEEcCCHHHH
Confidence 776443 556788842 34578888986 244444 210 001 014679999999
Q ss_pred HHHHhhh
Q 026498 185 LEEHGRR 191 (237)
Q Consensus 185 Le~~~~~ 191 (237)
|......
T Consensus 134 L~~~i~~ 140 (153)
T 2prv_A 134 FYNKIQE 140 (153)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9876544
No 4
>2pag_A Hypothetical protein; nysgx, target 10412I, novel fold, structural genomics, PSI-2 structure initiative; 1.60A {Pseudomonas syringae PV} SCOP: d.369.1.1
Probab=98.53 E-value=8.2e-07 Score=71.12 Aligned_cols=110 Identities=8% Similarity=0.158 Sum_probs=64.7
Q ss_pred CCCCCHHHHHHHHHHcCCCCCHHHHHHhHHh-CCCcCcCCCcccccccccccceeeccceeeeeecChHHHHHHHHHHHh
Q 026498 33 RKGASEADIQQLEKSLKVKLPVPTRILYRFC-DGQECQTDDFESIGAMGLIGGYSFYGHLVNVYLIPLSHIIMETKEIRR 111 (237)
Q Consensus 33 ~~gate~eI~~~E~~lg~~LP~~lr~lyr~h-nGq~~~~~~~~~~~~~Gl~gg~~~y~~~~~~~LLpL~~i~~~~~~~r~ 111 (237)
..++|+++|.++|+.||++||++||.+++-+ ||. +|+...+.. ... -+-..+...+...++
T Consensus 19 ~~~~t~e~I~~~E~~Lgi~fP~dYk~fl~~~~~~~---------------~g~~~~~~~-~~~--~~~~~i~~~~~~~~~ 80 (135)
T 2pag_A 19 LELPDEDQLVEIEEQLFINIPFVFKEFLLTVSDVV---------------YGSLEPVTV-TDP--QSHTYLPEVCATAWD 80 (135)
T ss_dssp CCCCCHHHHHHHHHHHTCCCCHHHHHHHHHHTTCC---------------BTTBCBCBS-SCT--TSTTBHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCcc---------------cCcceeeee-ccC--CcccchHHHHHHHHH
Confidence 4555999999999999999999999999975 332 122100000 000 000124444433343
Q ss_pred hcCCCCCCeeeEEEeccCCCcceEEEecCCCeeEEeeeccCCCCcccccCccchhcccCCCC--CCcccchHHHHHHHH
Q 026498 112 HLDFPGRDKYVVVAFSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEMIPCVPNALIALGHGCN--SDQQQDGMLLWLEEH 188 (237)
Q Consensus 112 ~~~~~g~~~~i~~~as~~~~~~~~~ld~~~G~l~vg~~n~~~~G~~~pcvp~~~i~~~~d~~--~~~~~ds~~~WLe~~ 188 (237)
. .. +..+++++ +. .+.++.+| .+|+++.- .|+.. .+..++||..|+++.
T Consensus 81 ~-~l--p~~~ipf~-~~--~Gn~iCid-~~g~Vv~w---------------------dhe~~~~~~~~~~s~~~w~~~~ 131 (135)
T 2pag_A 81 L-GV--PRELIPIC-QD--GEDYYCVE-EDGTVLLW---------------------SAEEELVTEESWESVWHWARDV 131 (135)
T ss_dssp H-TC--CTTSEEEE-EE--TTEEEEEC-TTSCEEEE---------------------CC---CEEEEEESSHHHHHHHT
T ss_pred c-CC--CCCeEEEE-EC--CCCEEEEC-CCCEEEEE---------------------EccCCccCCccCccHHHHHHHH
Confidence 2 22 45678888 32 57778888 56665421 12222 346689999999875
No 5
>3ffv_A Protein SYD; membrane, translocon, secyeg, nanodisc, cell inner membrane, cell membrane, protein binding; 2.00A {Escherichia coli}
Probab=88.75 E-value=2.4 Score=35.28 Aligned_cols=114 Identities=10% Similarity=0.159 Sum_probs=65.2
Q ss_pred CHHHHHHHHHHcCCCCCHHHHHHhHHhCCCcCcCCCcccccccccccceeeccceeeeeecChHHHHHH------HHHHH
Q 026498 37 SEADIQQLEKSLKVKLPVPTRILYRFCDGQECQTDDFESIGAMGLIGGYSFYGHLVNVYLIPLSHIIME------TKEIR 110 (237)
Q Consensus 37 te~eI~~~E~~lg~~LP~~lr~lyr~hnGq~~~~~~~~~~~~~Gl~gg~~~y~~~~~~~LLpL~~i~~~------~~~~r 110 (237)
...++..+|+.|+++|.++++++| |.-... .-.+-++|+. ..-+..+|=++..+- ...++
T Consensus 58 ~~~~f~~vE~aLei~lh~~i~~fy----~~~~ag------dm~a~~~~~~----l~LlQvWs~~Df~rLQeNliGHl~mq 123 (181)
T 3ffv_A 58 GEQNVNAVERAFDIVIQPTIHTFY----TTQFAG------DMHAQFGDIK----LTLLQTWSEDDFRRVQENLIGHLVTQ 123 (181)
T ss_dssp SCSSCHHHHHHSSCCCCHHHHHHT----SSEECC------CEEEEETTEE----EEECCCCSHHHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHhcCcccHHHHHHH----hhhhcC------CCcceeCCce----eEEEecCCHHHHHHHHHHHHHHHHHH
Confidence 345899999999999999999999 322221 1245555532 112233455555443 33445
Q ss_pred hhcCCCCCCeeeEEEeccCCCcceEEEecCCCeeEEeeeccCCCCcccccCccchhcccCCCCCCcccchHHHHHHHH
Q 026498 111 RHLDFPGRDKYVVVAFSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEMIPCVPNALIALGHGCNSDQQQDGMLLWLEEH 188 (237)
Q Consensus 111 ~~~~~~g~~~~i~~~as~~~~~~~~~ld~~~G~l~vg~~n~~~~G~~~pcvp~~~i~~~~d~~~~~~~ds~~~WLe~~ 188 (237)
+++-. .+.-+|++. .....++-+|-.+|.+..=+ + |. -.+...++|+.++|+..
T Consensus 124 rrLK~-~PT~FIg~t---d~e~~lIsv~N~sGeV~LE~--~---G~---------------~~~~vLA~sLaeFL~~L 177 (181)
T 3ffv_A 124 KRLKL-PPTLFIATL---EEELEVISVCNLSGEVCKET--L---GT---------------RKRTHLASNLAEFLNQL 177 (181)
T ss_dssp HHTTC-CCEEEEEEC---SSTTEEEEEETTTCCEEEEE--T---TS---------------SCEEEEESSHHHHHHHC
T ss_pred HHhCC-CCcEEEEEe---cCCCcEEEEECCCCeEEEEe--C---CC---------------CcceehhhCHHHHHHhC
Confidence 55543 122234433 23356777777788765311 0 11 02568899999888764
No 6
>3ol3_A Putative uncharacterized protein; tuberculosis, RV0543C, ortholog, iodide ION S phasing, structural genomics; HET: PG4 PGE; 1.95A {Mycobacterium smegmatis} PDB: 3ol4_A
Probab=50.83 E-value=19 Score=27.40 Aligned_cols=46 Identities=20% Similarity=0.490 Sum_probs=32.3
Q ss_pred CChhHHHHHHHHHHHHHHHHhhChh---------hHhhcCCCCCHHHHHHHHHHc
Q 026498 3 PWPLVKRVKRCWDRLKNWLAENFPE---------AKATLRKGASEADIQQLEKSL 48 (237)
Q Consensus 3 ~~~~~~~v~~~W~rie~wL~~~~P~---------~~~~L~~gate~eI~~~E~~l 48 (237)
|-.+...+-....+|-+||+.=+|+ +.+.|..-.|++||.++=+.|
T Consensus 2 ~~~~~~~~p~~l~siv~WLRaGYPeGVP~~Dy~PLlALL~R~Ltddev~~Va~~L 56 (107)
T 3ol3_A 2 PGSMTETTTTFMDNVLGWLHKGYPEGVPPKDYFALLALLKRSLTEDEVVRAAQAI 56 (107)
T ss_dssp -------CHHHHHHHHHHHHHHCTTCBCGGGHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred CcchhccCcHHHHHHHHHHHccCCCCCCCCccHHHHHHhcccCCHHHHHHHHHHH
Confidence 4566677778899999999999984 457788889999998876554
No 7
>1fad_A Protein (FADD protein); apoptosis, death domain; NMR {Mus musculus} SCOP: a.77.1.2
Probab=37.24 E-value=76 Score=22.60 Aligned_cols=47 Identities=15% Similarity=0.176 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHHHHHHHhhChhhHhhcCCCCCHHHHHHHHHHcCCCCCH
Q 026498 6 LVKRVKRCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPV 54 (237)
Q Consensus 6 ~~~~v~~~W~rie~wL~~~~P~~~~~L~~gate~eI~~~E~~lg~~LP~ 54 (237)
.-..+...++.|.+-+......+...| |.++.+|+.+|.+..-.+.+
T Consensus 9 ~~~~l~~~~~~ia~~lg~~Wk~Lar~L--g~~~~~I~~I~~~~~~d~~e 55 (99)
T 1fad_A 9 GEAYLQVAFDIVCDNVGRDWKRLAREL--KVSEAKMDGIEEKYPRSLSE 55 (99)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHT--TCCHHHHHHHHHHCSSCHHH
T ss_pred CcccHHHHHHHHHHHHhhhHHHHHHHc--CCCHHHHHHHHHHCCCCHHH
Confidence 356777888888888887778888777 78999999999887544433
No 8
>2kvc_A Putative uncharacterized protein; structural genomics, seattle structural genomi for infectious disease, ssgcid, unknown function; NMR {Mycobacterium tuberculosis}
Probab=33.79 E-value=66 Score=24.15 Aligned_cols=39 Identities=23% Similarity=0.497 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHhhChh---------hHhhcCCCCCHHHHHHHHHHc
Q 026498 10 VKRCWDRLKNWLAENFPE---------AKATLRKGASEADIQQLEKSL 48 (237)
Q Consensus 10 v~~~W~rie~wL~~~~P~---------~~~~L~~gate~eI~~~E~~l 48 (237)
|.....+|-+||+.-+|+ +.+-|..-.|++||+++=+.|
T Consensus 4 ~~~~l~siv~WLRaGYP~GVP~~Dy~PLlALL~r~Ltdeev~~Va~~L 51 (103)
T 2kvc_A 4 MNRFLTSIVAWLRAGYPEGIPPTDSFAVLALLCRRLSHDEVKAVANEL 51 (103)
T ss_dssp HHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTTSCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHccCCCCCCCcchHHHHHHHhccCCHHHHHHHHHHH
Confidence 345678999999999984 446677888888888876553
No 9
>2qsr_A Transcription-repair coupling factor; structural genomics, PSI-2, protein ST initiative; 3.10A {Streptococcus pneumoniae}
Probab=30.39 E-value=46 Score=26.80 Aligned_cols=36 Identities=14% Similarity=0.234 Sum_probs=27.9
Q ss_pred hhHhhcCCCCCHHHHHHHHHH----cCCCCCHHHHHHhHHh
Q 026498 27 EAKATLRKGASEADIQQLEKS----LKVKLPVPTRILYRFC 63 (237)
Q Consensus 27 ~~~~~L~~gate~eI~~~E~~----lg~~LP~~lr~lyr~h 63 (237)
+++..|..-.+++||++++++ +| +||++++.|+.+.
T Consensus 32 ~lYkria~~~~~eel~~l~~EL~DRFG-~lP~~v~~Ll~v~ 71 (173)
T 2qsr_A 32 EIYKKIRQIDNRVNYEELQEELIDRFG-EYPDVVAYLLEIG 71 (173)
T ss_dssp HHHHHHHTCCSHHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHCC-CCcHHHHHHHHHH
Confidence 455566677789999887766 56 9999999999765
No 10
>4dxe_H ACP, acyl carrier protein; acyl-carrier-protein synthase, type II acid synthesis pathway; 2.51A {Staphylococcus aureus}
Probab=29.71 E-value=67 Score=23.24 Aligned_cols=44 Identities=16% Similarity=0.296 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhhChhhHhhcCCCCCH------------HHHHHHHHHcCCCCCHHH
Q 026498 13 CWDRLKNWLAENFPEAKATLRKGASE------------ADIQQLEKSLKVKLPVPT 56 (237)
Q Consensus 13 ~W~rie~wL~~~~P~~~~~L~~gate------------~eI~~~E~~lg~~LP~~l 56 (237)
.-++|.+.+++.+.--.+.+.+.++= +-+.++|+++|+++|++-
T Consensus 27 i~~~l~~iiae~l~~~~~~I~~d~~l~~dLGlDSL~~veLi~~lE~~fgi~i~~~~ 82 (101)
T 4dxe_H 27 NFDKVKDIIVDRLGVDADKVTEDASFKDDLGADSLDIAELVMELEDEFGTEIPDEE 82 (101)
T ss_dssp HHHHHHHHHHHTTCCCGGGCCTTCBTTTTSCCCHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHHHHCcChhhCCCCCcchhhcCCCcHHHHHHHHHHHHHHCCCCCHHH
Confidence 45677777777764333344444332 556789999999999875
No 11
>2lky_A Uncharacterized protein; infectious disease, tuberculosis, DUF proteins, ssgcid, STRU genomics; NMR {Mycobacterium smegmatis str}
Probab=25.29 E-value=96 Score=23.61 Aligned_cols=37 Identities=22% Similarity=0.521 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhhChh---------hHhhcCCCCCHHHHHHHHHHc
Q 026498 12 RCWDRLKNWLAENFPE---------AKATLRKGASEADIQQLEKSL 48 (237)
Q Consensus 12 ~~W~rie~wL~~~~P~---------~~~~L~~gate~eI~~~E~~l 48 (237)
....+|-+||+.-+|+ +.+.|..-.|++||+++=+.|
T Consensus 8 ~~l~siv~WLRAGYP~GVP~~Dy~PLLALL~r~Ltdeev~~Va~~L 53 (112)
T 2lky_A 8 AFLAKIAAWLNAGYPEGVPGPDRVPLLALLTRRLTNDEIKAIAEDL 53 (112)
T ss_dssp HHHHHHHHHHHHHCSSCCCHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCCCCCcchHHHHHHHcccCCHHHHHHHHHHH
Confidence 4578899999999984 446677888888888876553
No 12
>3mel_A Thiamin pyrophosphokinase family protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium; HET: TPP; 2.79A {Enterococcus faecalis}
Probab=24.79 E-value=29 Score=29.06 Aligned_cols=33 Identities=12% Similarity=0.109 Sum_probs=21.8
Q ss_pred hcccEEEeecCccceeeeCCCCCCCceeeEeCcEE
Q 026498 193 HNGIIRLRDEENLKFINLFPEEPPLCSIAVTNGVK 227 (237)
Q Consensus 193 ~~G~~~v~~~~~~r~i~lfP~~~p~c~~a~T~gv~ 227 (237)
..|.+.+......+++|+||-. + |+..+|.|.|
T Consensus 141 ~~g~~~i~~~~~~~~vSlipl~-~-~~~lt~~Glk 173 (222)
T 3mel_A 141 APGSYIVPKEPDKEYLAYCCLT-P-VENLTLRRSK 173 (222)
T ss_dssp CSSEEEEECCTTCCEEEEEESS-C-EEEEEEESBS
T ss_pred eCCcEEEEecCCCcEEEEEECc-c-cceEEEeccE
Confidence 4566666655556899999986 3 4456666654
No 13
>2zuv_A Lacto-N-biose phosphorylase; beta-alpha-barrel, TIM barrel, glycosyltransferase, transferase; HET: NDG; 1.85A {Bifidobacterium longum} PDB: 2zus_A* 2zuu_A* 2zut_A* 2zuw_A*
Probab=24.41 E-value=58 Score=32.41 Aligned_cols=47 Identities=19% Similarity=0.362 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHhhChhhH----hh----------------------cCCCCCHHHHHHHHHHcCCCCCHHH
Q 026498 9 RVKRCWDRLKNWLAENFPEAK----AT----------------------LRKGASEADIQQLEKSLKVKLPVPT 56 (237)
Q Consensus 9 ~v~~~W~rie~wL~~~~P~~~----~~----------------------L~~gate~eI~~~E~~lg~~LP~~l 56 (237)
+=+..-++|++||++| |+.. -| -...+|..-|++||++.|++|-++.
T Consensus 188 t~~~~~~~l~~wl~~~-p~~dVVRfTTfFy~Ftl~f~~~~~ek~vDW~gY~~sVSp~ale~Fe~e~GY~l~pEd 260 (759)
T 2zuv_A 188 TRKFVFDTFEQWLKDS-PQTDVVRFTTFFYQFTLLFDEKRREKVVDWFGCACTVSPRALDDFEAKYGYRLRPED 260 (759)
T ss_dssp HHHHHHHHHHHHHHTC-TTCCEEEESCCSCCCEEEECTTSSEEEEETTCCGGGBCHHHHHHHHHHHSSCCCTHH
T ss_pred HHHHHHHHHHHHHHhC-CCCcEEEEeeeeeeEEEEecccchhhcccccccccccCHHHHHHHHHHhCCCCCHHH
Confidence 3456678899999998 6321 11 2446789999999999999995543
No 14
>3gr0_A Protein PRGH; type III secretion system, inner membrane protein, cell MEMB membrane, transmembrane, virulence, membrane protein; 2.30A {Salmonella typhimurium} PDB: 2y9j_A
Probab=21.52 E-value=43 Score=27.91 Aligned_cols=40 Identities=20% Similarity=0.430 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHhhChhhH----------------hhcCCCCCHHHHHHHHHHcC
Q 026498 10 VKRCWDRLKNWLAENFPEAK----------------ATLRKGASEADIQQLEKSLK 49 (237)
Q Consensus 10 v~~~W~rie~wL~~~~P~~~----------------~~L~~gate~eI~~~E~~lg 49 (237)
+...=+||+.||.+++|.+. ...+...+.++.+.+.+.|-
T Consensus 60 ~~~e~~~i~~~L~~~~P~l~~~~i~l~~P~~P~l~ls~~r~~l~~~~~~~L~~~l~ 115 (197)
T 3gr0_A 60 ENEENKRISIWLDTYYPQLAYYRIHFDEPRKPVFWLSRQRNTMSKKELEVLSQKLR 115 (197)
T ss_dssp HHHHHHHHHHHHHHHSTTCCEEEEECSSTTSCEEEEESSSCCCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCceeEEEEecCCCCCCEEEEEeccccCCHHHHHHHHHHHH
Confidence 34455799999999999873 11244467777777776543
No 15
>1f80_D Acyl carrier protein; transferase; HET: PN2; 2.30A {Bacillus subtilis} SCOP: a.28.1.1 PDB: 2x2b_A* 1hy8_A
Probab=21.43 E-value=1.6e+02 Score=19.33 Aligned_cols=43 Identities=14% Similarity=0.241 Sum_probs=25.4
Q ss_pred HHHHHHHHHhhChhhHhhcCCCCCH------------HHHHHHHHHcCCCCCHHH
Q 026498 14 WDRLKNWLAENFPEAKATLRKGASE------------ADIQQLEKSLKVKLPVPT 56 (237)
Q Consensus 14 W~rie~wL~~~~P~~~~~L~~gate------------~eI~~~E~~lg~~LP~~l 56 (237)
.++|.+.+++....-.+.+.+.++= +=+..+|+++|+++|.+-
T Consensus 9 ~~~l~~~l~~~l~~~~~~i~~~~~l~~dlG~DSl~~vel~~~le~~fgi~i~~~~ 63 (81)
T 1f80_D 9 LERVTKIIVDRLGVDEADVKLEASFKEDLGADXLDVVELVMELEDEFDMEISDED 63 (81)
T ss_dssp HHHHHHHHHHHSSCCSSCCCTTCBHHHHSCCCHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHHHCCCHHhCCCccchHHHcCCcHHHHHHHHHHHHHHhCCccCHHH
Confidence 4455555555543222334444433 345778999999999864
Done!