BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026499
(237 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2F4W|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 J2
pdb|2F4W|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 J2
Length = 187
Score = 186 bits (471), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 85/172 (49%), Positives = 119/172 (69%)
Query: 2 AEKACVKRLQKEYRALCKEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFP 61
A +RL+++Y + K+PV ++ A P P++ILEWHYV+ G TP+ GGYY+GK+ FP
Sbjct: 11 APTTATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFP 70
Query: 62 PEYPYKPPGILMITPNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDXXXX 121
E+P+KPP I MITPNGRF +LCLS++DFHP++WNP WSVS+ILTGLLSFM++
Sbjct: 71 REFPFKPPSIYMITPNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPT 130
Query: 122 XXXXXXXXEEKQRLAKASLAFNCKNPAFRKLFPEYVEKYNEQQLAEQRVSEQ 173
K++LA SLAFN K+ F +LFPE VE+ ++Q A+ +S +
Sbjct: 131 LGSIETSDFTKRQLAVQSLAFNLKDKVFCELFPEVVEEIKQKQKAQDELSSR 182
>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating
Enzyme E2 From Toxoplasma Gondii
Length = 166
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 62/118 (52%), Gaps = 9/118 (7%)
Query: 4 KACVKRLQKEYRALCKEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPE 63
+ +KR+ KE L K+P ++ A P +D+ W + G +P++GG ++ I FP +
Sbjct: 20 QGALKRINKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSD 79
Query: 64 YPYKPPGILMIT----PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 117
YP+KPP + T PN +Q +CL D + W+P ++S +L + S + D
Sbjct: 80 YPFKPPKVNFTTKIYHPN--INSQGAICL---DILKDQWSPALTISKVLLSISSLLTD 132
>pdb|1JAS|A Chain A, Hsubc2b
pdb|2YB6|A Chain A, Native Human Rad6
pdb|2YBF|A Chain A, Complex Of Rad18 (Rad6 Binding Domain) With Rad6b
pdb|2Y4W|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Rad6b
Length = 152
Score = 71.2 bits (173), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 60/112 (53%), Gaps = 9/112 (8%)
Query: 8 KRLQKEYRALCKEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYK 67
+RL ++++ L ++P V PS N+I++W+ V+ G GTPF G + I+F EYP K
Sbjct: 7 RRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNK 66
Query: 68 PPGIL----MITPNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFM 115
PP + M PN +CL D W+P + VSSILT + S +
Sbjct: 67 PPTVRFLSKMFHPN--VYADGSICL---DILQNRWSPTYDVSSILTSIQSLL 113
>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme
Length = 157
Score = 70.9 bits (172), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 58/115 (50%), Gaps = 9/115 (7%)
Query: 7 VKRLQKEYRALCKEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPY 66
+KR+ KE L ++P + A P +D+ W + G N +P+ GG ++ I FP +YP+
Sbjct: 13 LKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 72
Query: 67 KPPGILMIT----PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 117
KPP + T PN + +CL D W+P ++S +L + S + D
Sbjct: 73 KPPKVAFTTRIYHPN--INSNGSICL---DILRSQWSPALTISKVLLSICSLLCD 122
>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type
Length = 149
Score = 70.9 bits (172), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 58/115 (50%), Gaps = 9/115 (7%)
Query: 7 VKRLQKEYRALCKEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPY 66
+KR+ KE L ++P + A P +D+ W + G N +P+ GG ++ I FP +YP+
Sbjct: 5 LKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 64
Query: 67 KPPGILMIT----PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 117
KPP + T PN + +CL D W+P ++S +L + S + D
Sbjct: 65 KPPKVAFTTRIYHPN--INSNGSICL---DILRSQWSPALTISKVLLSICSLLCD 114
>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating
Enzyme (E2) Ubch5b
Length = 152
Score = 70.5 bits (171), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 58/115 (50%), Gaps = 9/115 (7%)
Query: 7 VKRLQKEYRALCKEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPY 66
+KR+ KE L ++P + A P +D+ W + G N +P+ GG ++ I FP +YP+
Sbjct: 8 LKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 67
Query: 67 KPPGILMIT----PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 117
KPP + T PN + +CL D W+P ++S +L + S + D
Sbjct: 68 KPPKVAFTTRIYHPN--INSNGSICL---DILRSQWSPALTISKVLLSICSLLCD 117
>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 149
Score = 70.5 bits (171), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 58/115 (50%), Gaps = 9/115 (7%)
Query: 7 VKRLQKEYRALCKEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPY 66
+KR+ KE L ++P + A P +D+ W + G N +P+ GG ++ I FP +YP+
Sbjct: 5 LKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 64
Query: 67 KPPGILMIT----PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 117
KPP + T PN + +CL D W+P ++S +L + S + D
Sbjct: 65 KPPKVAFTTRIYHPN--INSNGSICL---DILRSQWSPALTISKVLLSICSLLCD 114
>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex
pdb|1W4U|A Chain A, Nmr Solution Structure Of The Ubiquitin Conjugating Enzyme
Ubch5b
pdb|4A49|B Chain B, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
pdb|4A4B|C Chain C, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
pdb|4A4C|C Chain C, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 147
Score = 70.5 bits (171), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 58/115 (50%), Gaps = 9/115 (7%)
Query: 7 VKRLQKEYRALCKEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPY 66
+KR+ KE L ++P + A P +D+ W + G N +P+ GG ++ I FP +YP+
Sbjct: 3 LKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 62
Query: 67 KPPGILMIT----PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 117
KPP + T PN + +CL D W+P ++S +L + S + D
Sbjct: 63 KPPKVAFTTRIYHPN--INSNGSICL---DILRSQWSPALTISKVLLSICSLLCD 112
>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure
Length = 149
Score = 70.5 bits (171), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 59/117 (50%), Gaps = 9/117 (7%)
Query: 5 ACVKRLQKEYRALCKEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEY 64
+ +KR+ KE L ++P + A P +D+ W + G N +P+ GG ++ I FP +Y
Sbjct: 3 SALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 62
Query: 65 PYKPPGILMIT----PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 117
P+KPP + T PN + +CL D W+P ++S +L + S + D
Sbjct: 63 PFKPPKVAFTTRIYHPN--INSNGSICL---DILRSQWSPALTISKVLLSICSLLCD 114
>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 70.5 bits (171), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 58/115 (50%), Gaps = 9/115 (7%)
Query: 7 VKRLQKEYRALCKEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPY 66
+KR+ KE L ++P + A P +D+ W + G N +P+ GG ++ I FP +YP+
Sbjct: 21 LKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 80
Query: 67 KPPGILMIT----PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 117
KPP + T PN + +CL D W+P ++S +L + S + D
Sbjct: 81 KPPKVAFTTRIYHPN--INSNGSICL---DILRSQWSPALTISKVLLSICSLLCD 130
>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b
Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin
Conjugating Enzyme
Length = 157
Score = 70.5 bits (171), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 58/115 (50%), Gaps = 9/115 (7%)
Query: 7 VKRLQKEYRALCKEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPY 66
+KR+ KE L ++P + A P +D+ W + G N +P+ GG ++ I FP +YP+
Sbjct: 13 LKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 72
Query: 67 KPPGILMIT----PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 117
KPP + T PN + +CL D W+P ++S +L + S + D
Sbjct: 73 KPPKVAFTTRIYHPN--INSNGSICL---DILRSQWSPALTISKVLLSICSLLCD 122
>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ser94gly
Length = 149
Score = 70.5 bits (171), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 57/115 (49%), Gaps = 9/115 (7%)
Query: 7 VKRLQKEYRALCKEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPY 66
+KR+ KE L ++P + A P +D+ W + G N +P+ GG ++ I FP +YP+
Sbjct: 5 LKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 64
Query: 67 KPPGILMIT----PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 117
KPP + T PN + +CL D W P ++S +L + S + D
Sbjct: 65 KPPKVAFTTRIYHPN--INSNGSICL---DILRSQWGPALTISKVLLSICSLLCD 114
>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|B Chain B, Structure Of The Ubch5 :chip U-Box Complex
Length = 152
Score = 70.5 bits (171), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 60/115 (52%), Gaps = 9/115 (7%)
Query: 7 VKRLQKEYRALCKEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPY 66
+KR+QKE + L ++P + A P +D+ W + G + +P+ GG ++ I FP +YP+
Sbjct: 8 LKRIQKELQDLQRDPPAQCSAGPVGDDLFHWQATIMGPSDSPYQGGVFFLTIHFPTDYPF 67
Query: 67 KPPGILMIT----PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 117
KPP + T PN + +CL D W+P +VS +L + S + D
Sbjct: 68 KPPKVAFTTKIYHPN--INSNGSICL---DILRSQWSPALTVSKVLLSICSLLCD 117
>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex
Length = 146
Score = 70.5 bits (171), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 58/115 (50%), Gaps = 9/115 (7%)
Query: 7 VKRLQKEYRALCKEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPY 66
+KR+ KE L ++P + A P +D+ W + G N +P+ GG ++ I FP +YP+
Sbjct: 2 LKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 61
Query: 67 KPPGILMIT----PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 117
KPP + T PN + +CL D W+P ++S +L + S + D
Sbjct: 62 KPPKVAFTTRIYHPN--INSNGSICL---DILRSQWSPALTISKVLLSICSLLCD 111
>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c
pdb|1X23|B Chain B, Crystal Structure Of Ubch5c
pdb|1X23|C Chain C, Crystal Structure Of Ubch5c
pdb|1X23|D Chain D, Crystal Structure Of Ubch5c
Length = 155
Score = 70.1 bits (170), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 59/119 (49%), Gaps = 9/119 (7%)
Query: 3 EKACVKRLQKEYRALCKEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPP 62
E +KR+ KE L ++P + A P +D+ W + G N +P+ GG ++ I FP
Sbjct: 7 EFMALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPT 66
Query: 63 EYPYKPPGILMIT----PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 117
+YP+KPP + T PN + +CL D W+P ++S +L + S + D
Sbjct: 67 DYPFKPPKVAFTTRIYHPN--INSNGSICL---DILRSQWSPALTISKVLLSICSLLCD 120
>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile88ala
Length = 149
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 58/115 (50%), Gaps = 9/115 (7%)
Query: 7 VKRLQKEYRALCKEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPY 66
+KR+ KE L ++P + A P +D+ W + G N +P+ GG ++ I FP +YP+
Sbjct: 5 LKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 64
Query: 67 KPPGILMIT----PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 117
KPP + T PN + +CL D W+P ++S +L + S + D
Sbjct: 65 KPPKVAFTTRIYHPN--INSNGSICL---DALRSQWSPALTISKVLLSICSLLCD 114
>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile37ala
Length = 149
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 57/115 (49%), Gaps = 9/115 (7%)
Query: 7 VKRLQKEYRALCKEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPY 66
+KR+ KE L ++P + A P +D+ W G N +P+ GG ++ I FP +YP+
Sbjct: 5 LKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATAMGPNDSPYQGGVFFLTIHFPTDYPF 64
Query: 67 KPPGILMIT----PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 117
KPP + T PN + +CL D W+P ++S +L + S + D
Sbjct: 65 KPPKVAFTTRIYHPN--INSNGSICL---DILRSQWSPALTISKVLLSICSLLCD 114
>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
Length = 163
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 59/116 (50%), Gaps = 9/116 (7%)
Query: 6 CVKRLQKEYRALCKEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYP 65
+KR+ +E L K+P S A P +D+ W + G +P+AGG ++ I FP +YP
Sbjct: 2 ALKRINRELADLGKDPPSSSSAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYP 61
Query: 66 YKPPGILMIT----PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 117
+KPP + T PN + +CL D + W+P ++S +L + S + D
Sbjct: 62 FKPPKVNFTTRIYHPN--INSNGSICL---DILRDQWSPALTISKVLLSISSLLTD 112
>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|J Chain J, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|K Chain K, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|L Chain L, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
Length = 399
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 1/112 (0%)
Query: 6 CVKRLQKEYRALCKEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYP 65
+KR+ KE L ++P + A P +D+ W + G N +P+ GG ++ I FP +YP
Sbjct: 4 ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 63
Query: 66 YKPPGILMITPNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 117
+KPP + T +S+ D W+P ++S +L + S + D
Sbjct: 64 FKPPKVAFTTRIYHPNINSNGSISL-DILRSQWSPALTISKVLLSICSLLCD 114
>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2
E1
Length = 194
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 59/113 (52%), Gaps = 5/113 (4%)
Query: 7 VKRLQKEYRALCKEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPY 66
KR+QKE + +P + A P ++I EW + G G+ + GG ++ I F PEYP+
Sbjct: 50 AKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPF 109
Query: 67 KPPGILMITP--NGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 117
KPP + T + +Q +CL D ++W+P ++S +L + S + D
Sbjct: 110 KPPKVTFRTRIYHCNINSQGVICL---DILKDNWSPALTISKVLLSICSLLTD 159
>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|D Chain D, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|F Chain F, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|H Chain H, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 149
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 58/115 (50%), Gaps = 9/115 (7%)
Query: 7 VKRLQKEYRALCKEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPY 66
+KR+QKE L ++P +H A P +D+ W + G + + GG ++ + FP +YP+
Sbjct: 5 LKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPF 64
Query: 67 KPPGILMIT----PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 117
KPP I T PN + +CL D W+P +VS +L + S + D
Sbjct: 65 KPPKIAFTTKIYHPN--INSNGSICL---DILRSQWSPALTVSKVLLSICSLLCD 114
>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3OJ4|D Chain D, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3PTF|A Chain A, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
pdb|3PTF|B Chain B, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
Length = 153
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 58/115 (50%), Gaps = 9/115 (7%)
Query: 7 VKRLQKEYRALCKEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPY 66
+KR+QKE L ++P +H A P +D+ W + G + + GG ++ + FP +YP+
Sbjct: 9 LKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPF 68
Query: 67 KPPGILMIT----PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 117
KPP I T PN + +CL D W+P +VS +L + S + D
Sbjct: 69 KPPKIAFTTKIYHPN--INSNGSICL---DILRSQWSPALTVSKVLLSICSLLCD 118
>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
pdb|2C4P|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
Length = 165
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 58/115 (50%), Gaps = 9/115 (7%)
Query: 7 VKRLQKEYRALCKEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPY 66
+KR+QKE L ++P +H A P +D+ W + G + + GG ++ + FP +YP+
Sbjct: 21 LKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPF 80
Query: 67 KPPGILMIT----PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 117
KPP I T PN + +CL D W+P +VS +L + S + D
Sbjct: 81 KPPKIAFTTKIYHPN--INSNGSICL---DILRSQWSPALTVSKVLLSICSLLCD 130
>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin-
Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans:
Functional And Evolutionary Significance
Length = 150
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 59/115 (51%), Gaps = 9/115 (7%)
Query: 7 VKRLQKEYRALCKEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPY 66
+KR+QKE + L ++P + A P +D+ W + G +P+ GG ++ I FP +YP+
Sbjct: 6 LKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPF 65
Query: 67 KPPGILMIT----PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 117
KPP + T PN + +CL D W+P ++S +L + S + D
Sbjct: 66 KPPKVAFTTRIYHPN--INSNGSICL---DILRSQWSPALTISKVLLSICSLLCD 115
>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana
Length = 152
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 63/114 (55%), Gaps = 9/114 (7%)
Query: 8 KRLQKEYRALCKEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYK 67
KRL ++++ L ++P + + P N+I+ W+ V+ G + TP+ GG + ++F +YP K
Sbjct: 7 KRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNK 66
Query: 68 PPGILMIT----PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 117
PP + ++ PN +CL D W+P++ V++ILT + S + D
Sbjct: 67 PPTVRFVSRMFHPN--IYADGSICL---DILQNQWSPIYDVAAILTSIQSLLCD 115
>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate
Length = 150
Score = 68.2 bits (165), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 56/116 (48%), Gaps = 1/116 (0%)
Query: 2 AEKACVKRLQKEYRALCKEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFP 61
A +KR+ KE L ++P + A P +D+ W + G N +P+ GG ++ I FP
Sbjct: 1 AGSMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFP 60
Query: 62 PEYPYKPPGILMITPNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 117
+YP+KPP + T +S+ D W+P ++S +L + S + D
Sbjct: 61 TDYPFKPPKVAFTTRIYHPNINSNGSISL-DILRSQWSPALTISKVLLSICSLLCD 115
>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|D Chain D, Structure Of Birc7-Ubch5b-Ub Complex
Length = 147
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 1/111 (0%)
Query: 7 VKRLQKEYRALCKEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPY 66
+KR+ KE L ++P + A P +D+ W + G N +P+ GG ++ I FP +YP+
Sbjct: 3 LKRIHKELNDLARDPPAQCRAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 62
Query: 67 KPPGILMITPNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 117
KPP + T +S+ D W+P ++S +L + S + D
Sbjct: 63 KPPKVAFTTRIYHPAINSNGSISL-DILRSQWSPALTISKVLLSICSLLCD 112
>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate
Length = 147
Score = 67.4 bits (163), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 1/111 (0%)
Query: 7 VKRLQKEYRALCKEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPY 66
+KR+ KE L ++P + A P +D+ W + G N +P+ GG ++ I FP +YP+
Sbjct: 3 LKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 62
Query: 67 KPPGILMITPNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 117
KPP + T +S+ D W+P ++S +L + S + D
Sbjct: 63 KPPKVAFTTRIYHPNINSNGSISL-DILRSQWSPALTISKVLLSICSLLCD 112
>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect
pdb|3JVZ|B Chain B, E2~ubiquitin-Hect
pdb|3JW0|A Chain A, E2~ubiquitin-Hect
pdb|3JW0|B Chain B, E2~ubiquitin-Hect
Length = 146
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 53/110 (48%), Gaps = 1/110 (0%)
Query: 8 KRLQKEYRALCKEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYK 67
KR+ KE L ++P + A P +D+ W + G N +P+ GG ++ I FP +YP+K
Sbjct: 3 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 62
Query: 68 PPGILMITPNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 117
PP + T +S+ D W+P +S +L + S + D
Sbjct: 63 PPKVAFTTRIYHPNINSNGSISL-DILRSQWSPALKISKVLLSICSLLCD 111
>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating
Enzyme From Entamoeba Histolytica
Length = 151
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 60/115 (52%), Gaps = 9/115 (7%)
Query: 7 VKRLQKEYRALCKEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPY 66
++R+QKE R + ++P + A P +DI W + G + +P+ GG ++ + FP +YP+
Sbjct: 6 MRRIQKELREIQQDPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPF 65
Query: 67 KPPGILMIT----PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 117
K P + +T PN +CL D + W+P ++S +L + S + D
Sbjct: 66 KAPRVTFMTKVYHPN--INKNGVICL---DILKDQWSPALTLSRVLLSISSLLTD 115
>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|B Chain B, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|C Chain C, Human Ubiquitin Conjugating Enzyme E2e2
Length = 149
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 59/113 (52%), Gaps = 5/113 (4%)
Query: 7 VKRLQKEYRALCKEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPY 66
KR+QKE + +P + A P ++I EW + G G+ + GG ++ I F P+YP+
Sbjct: 5 AKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPF 64
Query: 67 KPPGILMITP--NGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 117
KPP + T + +Q +CL D ++W+P ++S +L + S + D
Sbjct: 65 KPPKVTFRTRIYHCNINSQGVICL---DILKDNWSPALTISKVLLSICSLLTD 114
>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 57/115 (49%), Gaps = 9/115 (7%)
Query: 7 VKRLQKEYRALCKEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPY 66
+KR+ KE L ++P + A P +D+ W + G N +P+ GG ++ I FP +YP+
Sbjct: 21 LKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 80
Query: 67 KPPGILMIT----PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 117
KPP + T PN + + L D W+P ++S +L + S + D
Sbjct: 81 KPPKVAFTTRIYHPN--INSNGSIXL---DILRSQWSPALTISKVLLSICSLLCD 130
>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme
Length = 148
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 57/114 (50%), Gaps = 9/114 (7%)
Query: 8 KRLQKEYRALCKEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYK 67
KR+ KE L ++P + A P +D+ W + G +P+AGG ++ I FP +YP+K
Sbjct: 5 KRIAKELSDLERDPPTSCSAGPVGDDLYHWQASIMGPADSPYAGGVFFLSIHFPTDYPFK 64
Query: 68 PPGILMIT----PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 117
PP I T PN +CL D + W+P ++S +L + S + D
Sbjct: 65 PPKISFTTKIYHPN--INANGNICL---DILKDQWSPALTLSKVLLSICSLLTD 113
>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
pdb|4AP4|E Chain E, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 153
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 56/115 (48%), Gaps = 9/115 (7%)
Query: 7 VKRLQKEYRALCKEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPY 66
+KR+QKE L ++P +H A P +D+ W + G + + GG ++ + FP +YP+
Sbjct: 9 LKRIQKELSDLQRDPPAHCRAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPF 68
Query: 67 KPPGILMIT----PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 117
KPP I T PN KL D W+P +VS +L + S + D
Sbjct: 69 KPPKIAFTTKIYHPNINSNGSIKL-----DILRSQWSPALTVSKVLLSICSLLCD 118
>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|B Chain B, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|C Chain C, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 163
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 59/112 (52%), Gaps = 9/112 (8%)
Query: 8 KRLQKEYRALCKEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYK 67
+RL ++++ L ++P + V P+ ++IL W ++ G TPF G + ++F EYP K
Sbjct: 7 RRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNK 66
Query: 68 PPGILMIT----PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFM 115
PP + I+ PN +CL D W+P + V++ILT + S +
Sbjct: 67 PPTVKFISKMFHPN--VYADGSICL---DILQNRWSPTYDVAAILTSIQSLL 113
>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a
Crystallographic Structure Of Ubiquitin-Conjugating
Enzyme (Ubc-1) From Caenorhabditis Elegans
Length = 157
Score = 63.5 bits (153), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 59/112 (52%), Gaps = 9/112 (8%)
Query: 8 KRLQKEYRALCKEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYK 67
+RL ++++ L ++P + V P+ ++IL W ++ G TPF G + ++F EYP K
Sbjct: 10 RRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNK 69
Query: 68 PPGILMIT----PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFM 115
PP + I+ PN +CL D W+P + V++ILT + S +
Sbjct: 70 PPTVKFISKMFHPN--VYADGSICL---DILQNRWSPTYDVAAILTSIQSLL 116
>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces
Cerevisiae
Length = 165
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 64/131 (48%), Gaps = 25/131 (19%)
Query: 4 KACVKRLQKEYRALCKEPVSHVVARP-SPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPP 62
K KRL KE + L K+ +VA P S N+I W +++G TP+A G + K++FP
Sbjct: 3 KTAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPK 62
Query: 63 EYPYKPPGILM--------ITPNGRFMTQKKLCLS----------MSDFHPESWNPMWSV 104
+YP PP + I PNG ++C+S M + E W+P+ SV
Sbjct: 63 DYPLSPPKLTFTPSILHPNIYPNG------EVCISILHSPGDDPNMYELAEERWSPVQSV 116
Query: 105 SSILTGLLSFM 115
IL ++S +
Sbjct: 117 EKILLSVMSML 127
>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating
Enzyme From Plasmodium Yoelii
Length = 216
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 55/113 (48%), Gaps = 8/113 (7%)
Query: 9 RLQKEYRALCKEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKP 68
RLQKE + + E V + A ++ EW ++G GTP+ GG++ I P +YPY P
Sbjct: 27 RLQKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNP 86
Query: 69 PGILMIT----PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 117
P I +T PN T +CL D W+P ++ + L + + + D
Sbjct: 87 PKIKFVTKIWHPNISSQT-GAICL---DVLKNEWSPALTIRTALLSIQALLSD 135
>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
Length = 169
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 58/114 (50%), Gaps = 9/114 (7%)
Query: 8 KRLQKEYRALCKEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYK 67
+RL ++++ + ++ V A P P++++ W+ ++ G TP+ G + ++F EYP K
Sbjct: 7 RRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNK 66
Query: 68 PPGIL----MITPNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 117
PP + M PN ++CL D W P + V+SILT + S D
Sbjct: 67 PPHVKFLSEMFHPN--VYANGEICL---DILQNRWTPTYDVASILTSIQSLFND 115
>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The
Destruction Of Mitotic Cyclins
Length = 156
Score = 57.4 bits (137), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 52/110 (47%), Gaps = 5/110 (4%)
Query: 8 KRLQKEYRALCKEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYK 67
KRLQ+E R L + A P +++ +W L+G T + Y ++FP +YPYK
Sbjct: 12 KRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYK 71
Query: 68 PPGILMITP--NGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFM 115
PP + TP + +CL D E+W + V +IL L S +
Sbjct: 72 PPVVKFTTPCWHPNVDQSGNICL---DILKENWTASYDVRTILLSLQSLL 118
>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|B Chain B, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|C Chain C, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|D Chain D, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
Length = 183
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 58/132 (43%), Gaps = 21/132 (15%)
Query: 1 MAEKACVKRLQKEYRALCKEPVSHV-VARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIK 59
M + K L E + L +EPV V D+ W + G T + GGY+ ++K
Sbjct: 3 MGSPSSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLK 62
Query: 60 FPPEYPYKPPGILMIT----PNGRFMTQKKLCLSMSDFHP------------ESWNPMWS 103
FP +YPY PP +T PN +C+S+ HP E WNP +
Sbjct: 63 FPIDYPYSPPAFRFLTKMWHPN--IYETGDVCISI--LHPPVDDPQSGELPSERWNPTQN 118
Query: 104 VSSILTGLLSFM 115
V +IL ++S +
Sbjct: 119 VRTILLSVISLL 130
>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
pdb|3E95|B Chain B, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 151
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 59/112 (52%), Gaps = 9/112 (8%)
Query: 8 KRLQKEYRALCKEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYK 67
+R+ KE + L EP ++A P P + ++ ++ G +GTP+ GG Y ++ P +YP +
Sbjct: 4 RRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPME 63
Query: 68 PPGILMIT----PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFM 115
PP + +T PN + ++CL D + W+P + ++L + + +
Sbjct: 64 PPKVRFLTKIYHPNIDKLG--RICL---DILKDKWSPALQIRTVLLSIQALL 110
>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating
Enzyme, Pfe1350c, From Plasmodium Falciparum
Length = 149
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 59/112 (52%), Gaps = 9/112 (8%)
Query: 8 KRLQKEYRALCKEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYK 67
+R+ KE + L EP ++A P P + ++ ++ G +GTP+ GG Y ++ P +YP +
Sbjct: 4 RRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPME 63
Query: 68 PPGILMIT----PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFM 115
PP + +T PN + ++CL D + W+P + ++L + + +
Sbjct: 64 PPKVRFLTKIYHPNIDKLG--RICL---DILKDKWSPALQIRTVLLSIQALL 110
>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
pdb|2F4Z|B Chain B, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
Length = 193
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 11/124 (8%)
Query: 1 MAEKACVKRLQKEYRA--LCKEPVSH-VVARPSPNDILEWHYVLEGSNGTPFAGGYYYGK 57
+ E A +++LQ+ + + SH V A+ DI W + G GTP+ GG++
Sbjct: 38 LKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLD 97
Query: 58 IKFPPEYPYKPPGILMIT----PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLS 113
I PP+YPY PP + +T PN T +CL D W+P ++ + L + +
Sbjct: 98 IVIPPDYPYNPPKMKFVTKIWHPNISSQT-GAICL---DILKHEWSPALTIRTALLSIQA 153
Query: 114 FMMD 117
+ D
Sbjct: 154 MLAD 157
>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34
Length = 180
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 56/125 (44%), Gaps = 21/125 (16%)
Query: 8 KRLQKEYRALCKEPVSHV-VARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPY 66
K L E + L +EPV V D+ W + G T + GGY+ ++KFP +YPY
Sbjct: 7 KALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPY 66
Query: 67 KPPGILMIT----PNGRFMTQKKLCLSMSDFHP------------ESWNPMWSVSSILTG 110
PP +T PN +C+S+ HP E WNP +V +IL
Sbjct: 67 SPPAFRFLTKMWHPN--IYETGDVCISI--LHPPVDDPQSGELPSERWNPTQNVRTILLS 122
Query: 111 LLSFM 115
++S +
Sbjct: 123 VISLL 127
>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme,
Ubc1
Length = 215
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 57/114 (50%), Gaps = 9/114 (7%)
Query: 7 VKRLQKEYRALCKEPVSHVVAR-PSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYP 65
KR+ KE +A+ +P +H+ S +DI G GTP+ GG + I+ P EYP
Sbjct: 4 AKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYP 63
Query: 66 YKPPGILMIT----PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFM 115
+KPP + T PN +T +CL D +W+P+ ++ S L L + +
Sbjct: 64 FKPPKMQFDTKVYHPNISSVT-GAICL---DILRNAWSPVITLKSALISLQALL 113
>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester
Complex
pdb|1FZY|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
pdb|1FZY|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
Length = 149
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 57/114 (50%), Gaps = 9/114 (7%)
Query: 7 VKRLQKEYRALCKEPVSHVVAR-PSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYP 65
KR+ KE +A+ +P +H+ S +DI G GTP+ GG + I+ P EYP
Sbjct: 3 AKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYP 62
Query: 66 YKPPGILMIT----PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFM 115
+KPP + T PN +T +CL D +W+P+ ++ S L L + +
Sbjct: 63 FKPPKMQFDTKVYHPNISSVT-GAICL---DILKNAWSPVITLKSALISLQALL 112
>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13
pdb|4DHI|D Chain D, Structure Of C. Elegans Otub1 Bound To Human Ubc13
pdb|4DHJ|C Chain C, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|K Chain K, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|G Chain G, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|N Chain N, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHZ|F Chain F, The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub
Length = 152
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 19/117 (16%)
Query: 8 KRLQKEYRALCKEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYK 67
+R+ KE + L EPV + A P ++ +H V+ G +PF GG + ++ P EYP
Sbjct: 6 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 65
Query: 68 PPGILMITPNGRFMTQ---------KKLCLSMSDFHPESWNPMWSVSSILTGLLSFM 115
P + RFMT+ ++CL D + W+P + ++L + + +
Sbjct: 66 APKV-------RFMTKIYHPNVDKLGRICL---DILKDKWSPALQIRTVLLSIQALL 112
>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|E Chain E, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|H Chain H, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|K Chain K, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 154
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 19/117 (16%)
Query: 8 KRLQKEYRALCKEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYK 67
+R+ KE + L EPV + A P ++ +H V+ G +PF GG + ++ P EYP
Sbjct: 8 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 67
Query: 68 PPGILMITPNGRFMTQ---------KKLCLSMSDFHPESWNPMWSVSSILTGLLSFM 115
P + RFMT+ ++CL D + W+P + ++L + + +
Sbjct: 68 APKV-------RFMTKIYHPNVDKLGRICL---DILKDKWSPALQIRTVLLSIQALL 114
>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150
Length = 169
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 70/159 (44%), Gaps = 13/159 (8%)
Query: 9 RLQKEYRALCKEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKP 68
RL++E L EP + + + + + G TP+ G + ++ P YP++P
Sbjct: 8 RLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEP 67
Query: 69 PGILMITP--NGRFMTQKKLCLSMSDFHPE-SWNPMWSVSSILTGLLSFMMDXXXXXXXX 125
P I +TP + + ++CL + P+ +W P +++++LT + M +
Sbjct: 68 PQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNP----- 122
Query: 126 XXXXEEKQRLAKASLAFNCKNPAFRKLFPEYVEKYNEQQ 164
+ +A S F PAF K ++ EK+ Q+
Sbjct: 123 -----DDPLMADISSEFKYNKPAFLKNARQWTEKHARQK 156
>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|E Chain E, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|G Chain G, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|J Chain J, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|L Chain L, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|N Chain N, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Q Chain Q, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|S Chain S, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|U Chain U, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|X Chain X, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Z Chain Z, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|BB Chain b, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|EE Chain e, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|GG Chain g, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|II Chain i, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|LL Chain l, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|NN Chain n, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|PP Chain p, Crystalstructure Of The Ubiquitin Protease
Length = 148
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 19/117 (16%)
Query: 8 KRLQKEYRALCKEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYK 67
+R+ KE + L EPV + A P ++ +H V+ G +PF GG + ++ P EYP
Sbjct: 4 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 63
Query: 68 PPGILMITPNGRFMTQ---------KKLCLSMSDFHPESWNPMWSVSSILTGLLSFM 115
P + RFMT+ ++CL D + W+P + ++L + + +
Sbjct: 64 APKV-------RFMTKIYHPNVDKLGRICL---DILKDKWSPALQIRTVLLSIQALL 110
>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|D Chain D, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 155
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 19/117 (16%)
Query: 8 KRLQKEYRALCKEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYK 67
+R+ KE + L EPV + A P ++ +H V+ G +PF GG + ++ P EYP
Sbjct: 9 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 68
Query: 68 PPGILMITPNGRFMTQ---------KKLCLSMSDFHPESWNPMWSVSSILTGLLSFM 115
P + RFMT+ ++CL D + W+P + ++L + + +
Sbjct: 69 APKV-------RFMTKIYHPNVDKLGRICL---DILKDKWSPALQIRTVLLSIQALL 115
>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|F Chain F, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|J Chain J, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 155
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 19/117 (16%)
Query: 8 KRLQKEYRALCKEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYK 67
+R+ KE + L EPV + A P ++ +H V+ G +PF GG + ++ P EYP
Sbjct: 11 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 70
Query: 68 PPGILMITPNGRFMTQ---------KKLCLSMSDFHPESWNPMWSVSSILTGLLSFM 115
P + RFMT+ ++CL D + W+P + ++L + + +
Sbjct: 71 APKV-------RFMTKIYHPNVDKLGRICL---DILKDKWSPALQIRTVLLSIQALL 117
>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
pdb|1I7K|B Chain B, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
Length = 179
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 5/110 (4%)
Query: 8 KRLQKEYRALCKEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYK 67
KRLQ+E L + A P +++ +W + G+ GT + Y ++FP YPY
Sbjct: 33 KRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYN 92
Query: 68 PPGILMITP--NGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFM 115
P + +TP + TQ + L D E W+ ++ V +IL + S +
Sbjct: 93 APTVKFLTPCYHPNVDTQGNISL---DILKEKWSALYDVRTILLSIQSLL 139
>pdb|1YRV|A Chain A, Novel Ubiquitin-Conjugating Enzyme
Length = 169
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 52/106 (49%), Gaps = 6/106 (5%)
Query: 10 LQKEYRALCKEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPP 69
L +++ L + + A+P D++EW +EG + + G + I F EY Y PP
Sbjct: 28 LHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPP 87
Query: 70 GILMIT----PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGL 111
+ IT PN T + C+ D +PE WN +++SSIL L
Sbjct: 88 VVKFITIPFHPNVDPHTGQP-CIDFLD-NPEKWNTNYTLSSILLAL 131
>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br Domain
Of Gp78 At 1.8-A Resolution
Length = 164
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 58/132 (43%), Gaps = 25/132 (18%)
Query: 5 ACVKRLQKEYRALCKEPVSHVVARP-SPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPE 63
+KRL EY+ L P +VA P + + EW ++ G T F G + + FP +
Sbjct: 3 TALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLD 62
Query: 64 YPYKPPGILM--------ITPNGRFMTQKKLCLSM----------SDFHPESWNPMWSVS 105
YP PP + I P+GR +C+S+ + E W+P+ SV
Sbjct: 63 YPLSPPKMRFTCEMFHPNIYPDGR------VCISILHAPGDDPMGYESSAERWSPVQSVE 116
Query: 106 SILTGLLSFMMD 117
IL ++S + +
Sbjct: 117 KILLSVVSMLAE 128
>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|C Chain C, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
Length = 170
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 58/132 (43%), Gaps = 25/132 (18%)
Query: 5 ACVKRLQKEYRALCKEPVSHVVARP-SPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPE 63
+KRL EY+ L P +VA P + + EW ++ G T F G + + FP +
Sbjct: 9 TALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLD 68
Query: 64 YPYKPPGILM--------ITPNGRFMTQKKLCLSM----------SDFHPESWNPMWSVS 105
YP PP + I P+GR +C+S+ + E W+P+ SV
Sbjct: 69 YPLSPPKMRFTCEMFHPNIYPDGR------VCISILHAPGDDPMGYESSAERWSPVQSVE 122
Query: 106 SILTGLLSFMMD 117
IL ++S + +
Sbjct: 123 KILLSVVSMLAE 134
>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
pdb|3FSH|B Chain B, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
Length = 168
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 58/132 (43%), Gaps = 25/132 (18%)
Query: 5 ACVKRLQKEYRALCKEPVSHVVARP-SPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPE 63
+KRL EY+ L P +VA P + + EW ++ G T F G + + FP +
Sbjct: 7 TALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLD 66
Query: 64 YPYKPPGILM--------ITPNGRFMTQKKLCLSM----------SDFHPESWNPMWSVS 105
YP PP + I P+GR +C+S+ + E W+P+ SV
Sbjct: 67 YPLSPPKMRFTCEMFHPNIYPDGR------VCISILHAPGDDPMGYESSAERWSPVQSVE 120
Query: 106 SILTGLLSFMMD 117
IL ++S + +
Sbjct: 121 KILLSVVSMLAE 132
>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Ube2g2
Length = 167
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 57/128 (44%), Gaps = 17/128 (13%)
Query: 5 ACVKRLQKEYRALCKEPVSHVVARP-SPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPE 63
+KRL EY+ L P +VA P + + EW ++ G T F G + + FP +
Sbjct: 6 TALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLD 65
Query: 64 YPYKPPGIL----MITPNGRFMTQKKLCLSM----------SDFHPESWNPMWSVSSILT 109
YP PP + M PN ++C+S+ + E W+P+ SV IL
Sbjct: 66 YPLSPPKMRFTCEMFHPN--IYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILL 123
Query: 110 GLLSFMMD 117
++S + +
Sbjct: 124 SVVSMLAE 131
>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|B Chain B, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|C Chain C, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|D Chain D, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2EKE|A Chain A, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
pdb|2EKE|B Chain B, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
Length = 157
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 12/119 (10%)
Query: 6 CVKRLQKEYRALCKEPVSHVVARPSPN-----DILEWHYVLEGSNGTPFAGGYYYGKIKF 60
C++RLQ+E + K+ A+P D+ +W + G GT +AGG Y +++
Sbjct: 5 CLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEY 64
Query: 61 PPEYPYKPPGILMITPNGRFMTQ----KKLCLSMSDFHPESWNPMWSVSSILTGLLSFM 115
P EYP KPP + P G + +CLS+ + + W P ++ I+ G+ +
Sbjct: 65 PNEYPSKPPKVKF--PAGFYHPNVYPSGTICLSILN-EDQDWRPAITLKQIVLGVQDLL 120
>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
pdb|3ONG|D Chain D, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
Length = 159
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 12/119 (10%)
Query: 6 CVKRLQKEYRALCKEPVSHVVARP-----SPNDILEWHYVLEGSNGTPFAGGYYYGKIKF 60
C++RLQ+E + K+ A+P D+ +W + G GT +AGG Y +++
Sbjct: 7 CLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEY 66
Query: 61 PPEYPYKPPGILMITPNGRFMTQ----KKLCLSMSDFHPESWNPMWSVSSILTGLLSFM 115
P EYP KPP + P G + +CLS+ + + W P ++ I+ G+ +
Sbjct: 67 PNEYPSKPPKVKF--PAGFYHPNVYPSGTICLSILN-EDQDWRPAITLKQIVLGVQDLL 122
>pdb|2FO3|A Chain A, Plasmodium Vivax Ubiquitin Conjugating Enzyme E2
Length = 125
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 6/110 (5%)
Query: 9 RLQKEYRALCKEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKP 68
R+QKE P + PN+I W G T +A Y KI FP +YP KP
Sbjct: 10 RIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKP 69
Query: 69 PGILMIT---PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFM 115
P + + + + +CLS+ + +NP S+S ++ ++S +
Sbjct: 70 PIVYFLQKPPKHTHVYSNGDICLSLLG---DDYNPSLSISGLVLSIISML 116
>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex
Length = 163
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 8/119 (6%)
Query: 6 CVKRLQKEYRALCKEPVSHVVARPSPN-----DILEWHYVLEGSNGTPFAGGYYYGKIKF 60
C RLQ+E + ++ A+P + D++ W + G T + GG Y + F
Sbjct: 11 CKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAF 70
Query: 61 PPEYPYKPPGILMITP--NGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 117
P EYP +PP P + +CLS+ + E W P ++ IL G+ + D
Sbjct: 71 PEEYPTRPPKCRFTPPLFHPNVYPSGTVCLSILN-EEEGWKPAITIKQILLGIQDLLDD 128
>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 164
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 13/121 (10%)
Query: 10 LQKEYRALCKEPVSHVVAR-PSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKP 68
L+K+ + + PV A NDI +W ++ G T + GG++ + FP +YP KP
Sbjct: 8 LKKQLADMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKP 67
Query: 69 PGILMITPNGRFMTQKKLCLSMSDFHP------------ESWNPMWSVSSILTGLLSFMM 116
P + I+ K+ + +S H E W P+ +V +IL ++S +
Sbjct: 68 PKMKFISEIWHPNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLT 127
Query: 117 D 117
D
Sbjct: 128 D 128
>pdb|2A7L|A Chain A, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
pdb|2A7L|B Chain B, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
Length = 136
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 9/114 (7%)
Query: 8 KRLQKEYRALCKEPVSHVVA--RPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYP 65
KRLQKE AL +P + + N I +W +EG+ GT + G + KF YP
Sbjct: 25 KRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYP 84
Query: 66 YKPPGILMITPN----GRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFM 115
+ P ++ N + +CLS+ E W+P SV S+ ++S +
Sbjct: 85 FDSPQVMFTGENIPVHPHVYSNGHICLSILT---EDWSPALSVQSVCLSIISML 135
>pdb|2Y9M|A Chain A, Pex4p-Pex22p Structure
Length = 172
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 18/117 (15%)
Query: 4 KACVKRLQKEYRALCK-----EPVSH----VVARPSP---NDILEWHYVLEGSNGTPFAG 51
C+ R+ KEY+ + K +P+++ ++ +P D+ +W ++ G + TP+
Sbjct: 5 DTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYEN 64
Query: 52 GYYYGKIKFPPEYPYKPPGILMITPNGRFMTQK----KLCLSMSDFHPESWNPMWSV 104
+ I+ P YP PP I + N K ++CL++ PE W P+W +
Sbjct: 65 HQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNI--LKPEEWTPVWDL 119
>pdb|2Y9O|A Chain A, Pex4p-Pex22p Mutant I Structure
Length = 172
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 18/117 (15%)
Query: 4 KACVKRLQKEYRALCK-----EPVSH----VVARPSP---NDILEWHYVLEGSNGTPFAG 51
C+ R+ KEY+ + K +P+++ ++ +P D+ +W ++ G + TP+
Sbjct: 5 DTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYEN 64
Query: 52 GYYYGKIKFPPEYPYKPPGILMITPNGRFMTQK----KLCLSMSDFHPESWNPMWSV 104
+ I+ P YP PP I + N K ++CL++ PE W P+W +
Sbjct: 65 HQFRILIEVPSSYPMNPPKISFMQNNILHSNVKSATGEICLNI--LKPEEWTPVWDL 119
>pdb|2Y9P|A Chain A, Pex4p-Pex22p Mutant Ii Structure
Length = 172
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 18/117 (15%)
Query: 4 KACVKRLQKEYRALCK-----EPVSH----VVARPSP---NDILEWHYVLEGSNGTPFAG 51
C+ R+ KEY+ + K +P+++ ++ +P D+ +W ++ G + TP+
Sbjct: 5 DTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYEN 64
Query: 52 GYYYGKIKFPPEYPYKPPGILMITPNGRFMTQK----KLCLSMSDFHPESWNPMWSV 104
+ I+ P YP PP I + N K ++CL++ PE W P+W +
Sbjct: 65 HQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNI--LKPEEWTPVWDL 119
>pdb|2H2Y|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|B Chain B, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|C Chain C, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|D Chain D, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
Length = 136
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 6/110 (5%)
Query: 9 RLQKEYRALCKEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKP 68
R+QKE K P + P++I W G T +A Y KI FP YP KP
Sbjct: 24 RIQKELNNFLKNPPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKP 83
Query: 69 PGILMIT---PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFM 115
P + + + + +CLS+ + +NP S+S ++ ++S +
Sbjct: 84 PIVYFLQKPPKHTHVYSNGDICLSVLG---DDYNPSLSISGLILSIISML 130
>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13
pdb|1JBB|B Chain B, Ubiquitin Conjugating Enzyme, Ubc13
Length = 153
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 54/112 (48%), Gaps = 9/112 (8%)
Query: 8 KRLQKEYRALCKEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYK 67
KR+ KE L +PV + A P +++ + +EG +P+ G + ++ P +YP +
Sbjct: 6 KRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPME 65
Query: 68 PPGILMIT----PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFM 115
P + +T PN + ++CL D +W+P + ++L + + +
Sbjct: 66 APKVRFLTKIYHPNIDRLG--RICL---DVLKTNWSPALQIRTVLLSIQALL 112
>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 155
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 54/112 (48%), Gaps = 9/112 (8%)
Query: 8 KRLQKEYRALCKEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYK 67
KR+ KE L +PV + A P +++ + +EG +P+ G + ++ P +YP +
Sbjct: 8 KRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPME 67
Query: 68 PPGILMIT----PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFM 115
P + +T PN + ++CL D +W+P + ++L + + +
Sbjct: 68 APKVRFLTKIYHPNIDRLG--RICL---DVLKTNWSPALQIRTVLLSIQALL 114
>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1
Length = 172
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 13/121 (10%)
Query: 10 LQKEYRALCKEPVSHVVAR-PSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKP 68
L+++ L K PV A ND+ W ++ G T + GG + + FP +YP +P
Sbjct: 22 LRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRP 81
Query: 69 PGILMITPNGRFMTQKKLCLSMSDFH------------PESWNPMWSVSSILTGLLSFMM 116
P + IT K + +S H E W P+ +V +I+ ++S +
Sbjct: 82 PKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLA 141
Query: 117 D 117
D
Sbjct: 142 D 142
>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q
Length = 161
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 54/116 (46%), Gaps = 8/116 (6%)
Query: 7 VKRLQKEYRALCKEPVSHVVARPSPN-----DILEWHYVLEGSNGTPFAGGYYYGKIKFP 61
+ RL +E +A K+ VA P+ N +++ W + G GTP+ GG + ++ F
Sbjct: 9 LSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFK 68
Query: 62 PEYPYKPPGILMITP--NGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFM 115
+YP PP P + + +CLS+ + + W P ++ IL G+ +
Sbjct: 69 DDYPSSPPKCKFEPPLFHPQVYPSGTVCLSILE-EDKDWRPAITIKQILLGIQELL 123
>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9
pdb|1U9B|A Chain A, MurineHUMAN UBIQUITIN-Conjugating Enzyme Ubc9
Length = 160
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 8/116 (6%)
Query: 7 VKRLQKEYRALCKEPVSHVVARPSPN-----DILEWHYVLEGSNGTPFAGGYYYGKIKFP 61
+ RL +E +A K+ VA P+ N +++ W + G GTP+ GG + ++ F
Sbjct: 8 LSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFK 67
Query: 62 PEYPYKPPGILMITP--NGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFM 115
+YP PP P + +CLS+ + + W P ++ IL G+ +
Sbjct: 68 DDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILE-EDKDWRPAITIKQILLGIQELL 122
>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a
Length = 161
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 8/116 (6%)
Query: 7 VKRLQKEYRALCKEPVSHVVARPSPN-----DILEWHYVLEGSNGTPFAGGYYYGKIKFP 61
+ RL +E +A K+ VA P+ N +++ W + G GTP+ GG + ++ F
Sbjct: 9 LSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFK 68
Query: 62 PEYPYKPPGILMITP--NGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFM 115
+YP PP P + +CLS+ + + W P ++ IL G+ +
Sbjct: 69 DDYPSSPPKCKFEPPLFHPNVAPSGTVCLSILE-EDKDWRPAITIKQILLGIQELL 123
>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
pdb|1KPS|C Chain C, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
Length = 159
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 8/116 (6%)
Query: 7 VKRLQKEYRALCKEPVSHVVARPSPN-----DILEWHYVLEGSNGTPFAGGYYYGKIKFP 61
+ RL +E +A K+ VA P+ N +++ W + G GTP+ GG + ++ F
Sbjct: 7 LSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFK 66
Query: 62 PEYPYKPPGILMITP--NGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFM 115
+YP PP P + +CLS+ + + W P ++ IL G+ +
Sbjct: 67 DDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILE-EDKDWRPAITIKQILLGIQELL 121
>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1,
Rangap1 And Nup358RANBP2
pdb|2PX9|B Chain B, The Intrinsic Affinity Between E2 And The Cys Domain Of E1
In Ubiquitin-Like Modifications
pdb|2VRR|A Chain A, Structure Of Sumo Modified Ubc9
pdb|2XWU|A Chain A, Crystal Structure Of Importin 13 - Ubc9 Complex
pdb|3UIN|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2
Length = 158
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 8/116 (6%)
Query: 7 VKRLQKEYRALCKEPVSHVVARPSPN-----DILEWHYVLEGSNGTPFAGGYYYGKIKFP 61
+ RL +E +A K+ VA P+ N +++ W + G GTP+ GG + ++ F
Sbjct: 6 LSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFK 65
Query: 62 PEYPYKPPGILMITP--NGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFM 115
+YP PP P + +CLS+ + + W P ++ IL G+ +
Sbjct: 66 DDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILE-EDKDWRPAITIKQILLGIQELL 120
>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|D Chain D, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|1A3S|A Chain A, Human Ubc9
Length = 160
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 8/116 (6%)
Query: 7 VKRLQKEYRALCKEPVSHVVARPSPN-----DILEWHYVLEGSNGTPFAGGYYYGKIKFP 61
+ RL +E +A K+ VA P+ N +++ W + G GTP+ GG + ++ F
Sbjct: 8 LSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFK 67
Query: 62 PEYPYKPPGILMITP--NGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFM 115
+YP PP P + +CLS+ + + W P ++ IL G+ +
Sbjct: 68 DDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILE-EDKDWRPAITIKQILLGIQELL 122
>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a
Length = 153
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 52/114 (45%), Gaps = 13/114 (11%)
Query: 8 KRLQKEYRALCKEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYK 67
KR+ KE L +PV + A P +++ + +EG +P+ G + ++ P +YP +
Sbjct: 6 KRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPME 65
Query: 68 PPGILMITPNGRFMTQ------KKLCLSMSDFHPESWNPMWSVSSILTGLLSFM 115
P + RF+T+ +L D +W+P + ++L + + +
Sbjct: 66 APKV-------RFLTKIYHPAIDRLGRISLDVLKTNWSPALQIRTVLLSIQALL 112
>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN
Length = 152
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 52/114 (45%), Gaps = 13/114 (11%)
Query: 8 KRLQKEYRALCKEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYK 67
KR+ KE L +PV + A P +++ + +EG +P+ G + ++ P +YP +
Sbjct: 6 KRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPME 65
Query: 68 PPGILMITPNGRFMTQ------KKLCLSMSDFHPESWNPMWSVSSILTGLLSFM 115
P + RF+T+ +L D +W+P + ++L + + +
Sbjct: 66 APKV-------RFLTKIYHPNIDRLGRISLDVLKTNWSPALQIRTVLLSIQALL 112
>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9
pdb|2PE6|A Chain A, Non-Covalent Complex Between Human Sumo-1 And Human Ubc9
Length = 161
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 8/116 (6%)
Query: 7 VKRLQKEYRALCKEPVSHVVARPSPN-----DILEWHYVLEGSNGTPFAGGYYYGKIKFP 61
+ RL +E +A K+ VA P+ N +++ W + G GTP+ GG + ++ F
Sbjct: 9 LSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFK 68
Query: 62 PEYPYKPPGILMITP--NGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFM 115
+YP PP P + +CLS+ + + W P ++ IL G+ +
Sbjct: 69 DDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILE-EDKDWRPAITIKQILLGIQELL 123
>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex
pdb|3A4S|B Chain B, The Crystal Structure Of The Sld2:ubc9 Complex
Length = 163
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 8/116 (6%)
Query: 7 VKRLQKEYRALCKEPVSHVVARPSPN-----DILEWHYVLEGSNGTPFAGGYYYGKIKFP 61
+ RL +E +A K+ VA P+ N +++ W + G GTP+ GG + ++ F
Sbjct: 11 LSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFK 70
Query: 62 PEYPYKPPGILMITP--NGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFM 115
+YP PP P + +CLS+ + + W P ++ IL G+ +
Sbjct: 71 DDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILE-EDKDWRPAITIKQILLGIQELL 125
>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a
Length = 161
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 8/116 (6%)
Query: 7 VKRLQKEYRALCKEPVSHVVARPSPN-----DILEWHYVLEGSNGTPFAGGYYYGKIKFP 61
+ RL +E +A K+ VA P+ N +++ W + G GTP+ GG + ++ F
Sbjct: 9 LSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFK 68
Query: 62 PEYPYKPPGILMITP--NGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFM 115
+YP PP P + +CLS+ + + W P ++ IL G+ +
Sbjct: 69 DDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILE-EDKDWRPAITIKQILLGIQELL 123
>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s
Length = 161
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 8/116 (6%)
Query: 7 VKRLQKEYRALCKEPVSHVVARPSPN-----DILEWHYVLEGSNGTPFAGGYYYGKIKFP 61
+ RL +E +A K+ VA P+ N +++ W + G GTP+ GG + ++ F
Sbjct: 9 LSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFK 68
Query: 62 PEYPYKPPGILMITP--NGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFM 115
+YP PP P + +CLS+ + + W P ++ IL G+ +
Sbjct: 69 DDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILE-EDKDWRPAITIKQILLGIQELL 123
>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1FBV|C Chain C, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 154
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 58/136 (42%), Gaps = 19/136 (13%)
Query: 33 DILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT----PNGRFMTQKKLCL 88
++L W ++ N P+ G + +I FP EYP+KPP I T PN + ++CL
Sbjct: 31 NLLTWQGLIVPDN-PPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPN--IDEKGQVCL 87
Query: 89 SMSDFHPESWNPMWSVSSILTGLLSFMMDXXXXXXXXXXXXEEKQRLAKASLAFNCKNPA 148
+ E+W P ++ L++ + D EE + K CKN
Sbjct: 88 PV--ISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKF----CKNAE 141
Query: 149 FRKLFPEYVEKYNEQQ 164
E+ +KY E++
Sbjct: 142 ------EFTKKYGEKR 151
>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SQV|D Chain D, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SY2|C Chain C, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
pdb|3SY2|D Chain D, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
Length = 156
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 58/136 (42%), Gaps = 19/136 (13%)
Query: 33 DILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT----PNGRFMTQKKLCL 88
++L W ++ N P+ G + +I FP EYP+KPP I T PN + ++CL
Sbjct: 33 NLLTWQGLIVPDN-PPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPN--IDEKGQVCL 89
Query: 89 SMSDFHPESWNPMWSVSSILTGLLSFMMDXXXXXXXXXXXXEEKQRLAKASLAFNCKNPA 148
+ E+W P ++ L++ + D EE + K CKN
Sbjct: 90 PV--ISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKF----CKNAE 143
Query: 149 FRKLFPEYVEKYNEQQ 164
E+ +KY E++
Sbjct: 144 ------EFTKKYGEKR 153
>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s
pdb|1ZDN|B Chain B, Ubiquitin-Conjugating Enzyme E2s
Length = 158
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 7/77 (9%)
Query: 7 VKRLQKEYRALCKEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPY 66
++ + KE L +P + P+ D+ + +EG GTP+AGG + K+ ++P
Sbjct: 15 IRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPA 74
Query: 67 KPPGILMITPNGRFMTQ 83
P P G F+T+
Sbjct: 75 SP-------PKGYFLTK 84
>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1
Length = 158
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 50/116 (43%), Gaps = 6/116 (5%)
Query: 6 CVKRLQKEYRALCKEPVSHVVARPSPN-----DILEWHYVLEGSNGTPFAGGYYYGKIKF 60
+ RL +E +A K+ VA P+ N +++ W + G GTP+ GG + ++ F
Sbjct: 5 ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLF 64
Query: 61 PPEYPYKPPGILMITPNGRFMTQKKLCLSMSDFHPE-SWNPMWSVSSILTGLLSFM 115
+YP PP P +S+S + W P ++ IL G+ +
Sbjct: 65 KDDYPSSPPKCKFEPPLFHPNVYPSGTVSLSILEEDKDWRPAITIKQILLGIQELL 120
>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin Complex
Length = 152
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 10/108 (9%)
Query: 9 RLQKEYRALCKEPVSHVVARPSPN-DILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYK 67
R+ KE L K+P ++ S + ++L WH +L + P+ + +I FPPEYP+K
Sbjct: 5 RVVKELEDLQKKPPPYLRNLSSDDANVLVWHALL-LPDQPPYHLKAFNLRISFPPEYPFK 63
Query: 68 PPGILMIT----PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGL 111
PP I T PN ++CL + E+W P +L L
Sbjct: 64 PPMIKFTTKIYHPNVD--ENGQICLPI--ISSENWKPCTKTCQVLEAL 107
>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
pdb|3UIP|A Chain A, Complex Between Human Rangap1-Sumo1, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
Length = 158
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 12/119 (10%)
Query: 6 CVKRLQKEYRALCKEPVSHVVARPSPN-----DILEWHYVLEGSNGTPFAGGYYYGKIKF 60
+ RL +E +A K+ VA P+ N +++ W + G GTP+ GG + ++ F
Sbjct: 5 ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLF 64
Query: 61 PPEYPYKPPGIL----MITPNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFM 115
+YP PP + PN L + D + W P ++ IL G+ +
Sbjct: 65 KDDYPSSPPKCKFEPPLFHPNVYPSGTVXLSILEED---KDWRPAITIKQILLGIQELL 120
>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8
pdb|1WZV|B Chain B, Crystal Structure Of Ubch8
pdb|1WZW|A Chain A, Crystal Structure Of Ubch8
Length = 155
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 10/108 (9%)
Query: 9 RLQKEYRALCKEPVSHVVARPSPN-DILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYK 67
R+ KE L K+P ++ S + ++L WH +L + P+ + +I FPPEYP+K
Sbjct: 8 RVVKELEDLQKKPPPYLRNLSSDDANVLVWHALL-LPDQPPYHLKAFNLRISFPPEYPFK 66
Query: 68 PPGILMIT----PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGL 111
PP I T PN ++CL + E+W P +L L
Sbjct: 67 PPMIKFTTKIYHPNVD--ENGQICLPI--ISSENWKPCTKTCQVLEAL 110
>pdb|3CEG|A Chain A, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
pdb|3CEG|B Chain B, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
Length = 323
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 13/85 (15%)
Query: 40 VLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPNG---RF----MTQKKLCLS-MS 91
++ G TP+A G + + FP +YP PP + + T G RF K+CLS ++
Sbjct: 115 LITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYNDGKVCLSILN 174
Query: 92 DFH---PESWNPMWSVSSILTGLLS 113
+H E WNP SS L L+S
Sbjct: 175 TWHGRPEEKWNPQ--TSSFLQVLVS 197
>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
pdb|3F92|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
Crystallized At Ph 8.5
Length = 253
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 11/109 (10%)
Query: 6 CVKRLQKEYRALCKEPVS---HVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPP 62
V+R+++E++ + K + + + E + G TP+ GG Y +IK P
Sbjct: 58 AVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPE 117
Query: 63 EYPYKPPGILMIT----PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSI 107
YP+ PP + IT PN +T +CL D + W ++ ++
Sbjct: 118 TYPFNPPKVRFITKIWHPNISSVT-GAICL---DILKDQWAAAMTLRTV 162
>pdb|1YF9|A Chain A, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|B Chain B, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|C Chain C, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
Length = 171
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 52/110 (47%), Gaps = 14/110 (12%)
Query: 8 KRLQKEYRALCKEPVSHVVARPSPNDILEWHYV-LEGSNGTPFAGGYYYGKIKFPPEYPY 66
+R + +Y LC + P+D + +V +G GTP+ G + ++ P +YP+
Sbjct: 15 RRREMDYMRLCNS-----TRKVYPSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPF 69
Query: 67 KPPGI----LMITPNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLL 112
K P I ++ PN + +CL + + ++W PM+ + +I L
Sbjct: 70 KSPSIGFCNRILHPNVDERS-GSVCLDVIN---QTWTPMYQLENIFDVFL 115
>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex
Length = 201
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 8/92 (8%)
Query: 6 CVKRLQKEYRALCKEPVS---HVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPP 62
V+R+++E++ + K + + + E + G TP+ GG Y +IK P
Sbjct: 6 AVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPE 65
Query: 63 EYPYKPPGILMIT----PNGRFMTQKKLCLSM 90
YP+ PP + IT PN +T +CL +
Sbjct: 66 TYPFNPPKVRFITKIWHPNISSVT-GAICLDI 96
>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|1YLA|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|2O25|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
Length = 202
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 8/92 (8%)
Query: 6 CVKRLQKEYRALCKEPVS---HVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPP 62
V+R+++E++ + K + + + E + G TP+ GG Y +IK P
Sbjct: 7 AVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPE 66
Query: 63 EYPYKPPGILMIT----PNGRFMTQKKLCLSM 90
YP+ PP + IT PN +T +CL +
Sbjct: 67 TYPFNPPKVRFITKIWHPNISSVT-GAICLDI 97
>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex
Length = 217
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 11/109 (10%)
Query: 6 CVKRLQKEYRALCKEPVS---HVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPP 62
V+R+++E++ + K + + + E + G TP+ GG Y +IK P
Sbjct: 22 AVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPE 81
Query: 63 EYPYKPPGILMIT----PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSI 107
YP+ PP + IT PN +T +CL D + W ++ ++
Sbjct: 82 TYPFNPPKVRFITKIWHPNISSVT-GAICL---DILKDQWAAAMTLRTV 126
>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k
pdb|2BF8|A Chain A, Crystal Structure Of Sumo Modified Ubiquitin Conjugating
Enzyme E2-25k
Length = 159
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 11/109 (10%)
Query: 6 CVKRLQKEYRALCKEPVS---HVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPP 62
V+R+++E++ + K + + + E + G TP+ GG Y +IK P
Sbjct: 9 AVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPE 68
Query: 63 EYPYKPPGILMIT----PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSI 107
YP+ PP + IT PN +T +CL D + W ++ ++
Sbjct: 69 TYPFNPPKVRFITKIWHPNISSVT-GAICL---DILKDQWAAAMTLRTV 113
>pdb|3O2U|A Chain A, S. Cerevisiae Ubc12
pdb|3O2U|B Chain B, S. Cerevisiae Ubc12
Length = 190
Score = 35.4 bits (80), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 13/78 (16%)
Query: 48 PFAGGYYYGKIKFPPE----YPYKPPGIL----MITPNGRFMTQKKLCLSMSDFHPESWN 99
P G Y YG I F + YP +PP ++ + PN + +CL++ E W+
Sbjct: 72 PDEGYYNYGSINFNLDFNEVYPIEPPKVVCLKKIFHPN--IDLKGNVCLNILR---EDWS 126
Query: 100 PMWSVSSILTGLLSFMMD 117
P + SI+TGLL ++
Sbjct: 127 PALDLQSIITGLLFLFLE 144
>pdb|2ONU|A Chain A, Plasmodium Falciparum Ubiquitin Conjugating Enzyme
Pf10_0330, Putative Homologue Of Human Ube2h
Length = 152
Score = 35.4 bits (80), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 8/81 (9%)
Query: 36 EWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGI----LMITPNGRFMTQKKLCLSMS 91
++ + G NGT + GG + + P +YP+ P I ++ PN +CL
Sbjct: 30 DFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVD-EASGSVCL--- 85
Query: 92 DFHPESWNPMWSVSSILTGLL 112
D ++W P++S+ ++ L
Sbjct: 86 DVINQTWTPLYSLVNVFEVFL 106
>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H
pdb|2Z5D|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 H
Length = 179
Score = 34.3 bits (77), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 8/74 (10%)
Query: 43 GSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT----PNGRFMTQKKLCLSMSDFHPESW 98
G GTP+ GG + ++ P +YP+K P I + PN +CL + + ++W
Sbjct: 59 GPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNID-EASGTVCLDVIN---QTW 114
Query: 99 NPMWSVSSILTGLL 112
++ +++I L
Sbjct: 115 TALYDLTNIFESFL 128
>pdb|3FN1|B Chain B, E2-Ring Expansion Of The Nedd8 Cascade Confers Specificity
To Cullin Modification
Length = 167
Score = 31.6 bits (70), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 46/112 (41%), Gaps = 25/112 (22%)
Query: 21 PVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKF----PPEYPYKPPGILMIT- 75
P + V P PN + + + TP G Y GK +F P Y PP + +T
Sbjct: 31 PCTCKVHFPDPNKLHCFQLTV-----TPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTK 85
Query: 76 ---PNGRFMTQKKLCLSMSDFHP---ESWNP-------MWSVSSILTGLLSF 114
PN ++CLS+ H W P +W ++S+ T LL+F
Sbjct: 86 IWHPN--ITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNF 135
>pdb|2EDI|A Chain A, Solution Structure Of The Uq_con Domain From Human Nedd8-
Conjugating Enzyme Nce2
Length = 173
Score = 31.2 bits (69), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 46/112 (41%), Gaps = 25/112 (22%)
Query: 21 PVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKF----PPEYPYKPPGILMIT- 75
P + V P PN + + + TP G Y GK +F P Y PP + +T
Sbjct: 31 PCTCKVHFPDPNKLHCFQLTV-----TPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTK 85
Query: 76 ---PNGRFMTQKKLCLSMSDFHP---ESWNP-------MWSVSSILTGLLSF 114
PN ++CLS+ H W P +W ++S+ T LL+F
Sbjct: 86 IWHPN--ITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNF 135
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 31.2 bits (69), Expect = 0.56, Method: Composition-based stats.
Identities = 19/83 (22%), Positives = 37/83 (44%), Gaps = 13/83 (15%)
Query: 98 WNPMWSVSSILTGLLSFMMDXXXXXXXXXXXXEEKQRLAKASLAFNCKNPAFRKLFPEYV 157
W M+ V + G+ SF+M +A SL + +N FR + +++
Sbjct: 796 WALMFLVLAAAQGICSFLMTFFMG-------------IASESLTRDLRNKLFRNVLSQHI 842
Query: 158 EKYNEQQLAEQRVSEQLSPESPN 180
++ Q A ++S +L+ + PN
Sbjct: 843 GFFDSPQNASGKISTRLATDVPN 865
>pdb|4DS2|A Chain A, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
pdb|4DS2|B Chain B, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
Length = 167
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 7/67 (10%)
Query: 50 AGGYYYGKIKFPPEYPYKPPGILMITP--NGRFMTQKKLCLSM-SDFHPESWNPMWSVSS 106
AG Y + F +YP++PP + +TP + + +C M +DF W P S
Sbjct: 67 AGNTYQLSVLFSDDYPHEPPTVRFVTPVYSPLVTGEGGICDRMVNDF----WTPDQHASD 122
Query: 107 ILTGLLS 113
++ +L
Sbjct: 123 VIKLVLD 129
>pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I6S|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I74|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
pdb|3I74|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
Length = 649
Score = 26.9 bits (58), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 12/49 (24%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 130 EEKQRLAKASLAFNCKNPAFRKLFPEYVEKYNEQ---QLAEQRVSEQLS 175
E+ + +A++S + NC NP+ +P ++ Y+ + L EQ+ ++
Sbjct: 519 EQFKTIARSSASHNCSNPSADLNYPSFIALYSIEGNFTLLEQKFKRTVT 567
>pdb|2GMI|B Chain B, Mms2UBC13~UBIQUITIN
Length = 137
Score = 26.9 bits (58), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 21/106 (19%), Positives = 40/106 (37%), Gaps = 1/106 (0%)
Query: 7 VKRLQKEYRALCKEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPY 66
++ L+K + E S+ +A + +W+ + G + Y I P YP
Sbjct: 11 LEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPD 70
Query: 67 KPPGILMITPNGRFMTQKKLCLSMSDFHP-ESWNPMWSVSSILTGL 111
PP + I+ +DFH W +++ ++L L
Sbjct: 71 SPPKVTFISKINLPCVNPTTGEVQTDFHTLRDWKRAYTMETLLLDL 116
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,328,969
Number of Sequences: 62578
Number of extensions: 302457
Number of successful extensions: 737
Number of sequences better than 100.0: 123
Number of HSP's better than 100.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 609
Number of HSP's gapped (non-prelim): 124
length of query: 237
length of database: 14,973,337
effective HSP length: 96
effective length of query: 141
effective length of database: 8,965,849
effective search space: 1264184709
effective search space used: 1264184709
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)