Query 026499
Match_columns 237
No_of_seqs 230 out of 1736
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 08:49:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026499.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026499hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0894 Ubiquitin-protein liga 100.0 2.6E-52 5.6E-57 349.0 19.7 237 1-237 1-243 (244)
2 KOG0417 Ubiquitin-protein liga 100.0 3.1E-46 6.6E-51 298.0 12.1 143 7-162 3-147 (148)
3 COG5078 Ubiquitin-protein liga 100.0 2.2E-45 4.9E-50 298.5 14.8 149 1-162 1-152 (153)
4 KOG0419 Ubiquitin-protein liga 100.0 4.6E-42 1E-46 267.4 11.8 147 1-161 1-149 (152)
5 PTZ00390 ubiquitin-conjugating 100.0 1.7E-41 3.7E-46 277.4 15.0 144 6-162 3-148 (152)
6 PLN00172 ubiquitin conjugating 100.0 4.6E-41 1E-45 273.5 14.9 143 7-162 3-147 (147)
7 KOG0425 Ubiquitin-protein liga 100.0 3.8E-36 8.3E-41 240.6 14.4 150 1-162 1-165 (171)
8 KOG0424 Ubiquitin-protein liga 100.0 3.4E-36 7.3E-41 237.8 13.4 150 1-162 1-157 (158)
9 KOG0418 Ubiquitin-protein liga 100.0 2.9E-36 6.2E-41 247.9 11.2 148 1-164 1-155 (200)
10 PF00179 UQ_con: Ubiquitin-con 100.0 5.8E-36 1.3E-40 240.9 11.0 137 9-157 1-140 (140)
11 KOG0426 Ubiquitin-protein liga 100.0 3.1E-35 6.6E-40 229.4 12.7 147 1-160 1-162 (165)
12 cd00195 UBCc Ubiquitin-conjuga 100.0 3E-35 6.4E-40 237.1 12.5 138 8-157 2-141 (141)
13 KOG0421 Ubiquitin-protein liga 100.0 1.1E-35 2.4E-40 234.9 9.4 144 3-160 27-172 (175)
14 smart00212 UBCc Ubiquitin-conj 100.0 3.7E-34 8E-39 231.8 14.0 142 8-161 1-145 (145)
15 KOG0416 Ubiquitin-protein liga 100.0 4.9E-33 1.1E-37 225.5 10.5 149 6-171 4-157 (189)
16 KOG0423 Ubiquitin-protein liga 100.0 1.4E-33 3.1E-38 229.1 5.3 148 6-166 11-160 (223)
17 KOG0422 Ubiquitin-protein liga 100.0 1.7E-31 3.7E-36 210.1 10.4 144 6-164 3-151 (153)
18 KOG0428 Non-canonical ubiquiti 100.0 1.7E-28 3.7E-33 209.3 11.8 141 4-145 10-151 (314)
19 KOG0420 Ubiquitin-protein liga 100.0 7.8E-29 1.7E-33 201.4 8.3 143 4-164 27-177 (184)
20 KOG0427 Ubiquitin conjugating 100.0 5E-28 1.1E-32 188.8 10.2 111 4-118 14-127 (161)
21 KOG0429 Ubiquitin-conjugating 99.7 8.6E-18 1.9E-22 141.9 11.1 141 8-162 22-170 (258)
22 KOG0895 Ubiquitin-conjugating 99.7 5.1E-18 1.1E-22 168.8 7.0 117 5-121 851-975 (1101)
23 KOG0895 Ubiquitin-conjugating 99.6 4.5E-16 9.8E-21 155.1 10.0 118 3-120 280-407 (1101)
24 KOG0896 Ubiquitin-conjugating 99.1 1E-10 2.3E-15 92.2 5.7 110 7-117 7-123 (138)
25 PF08694 UFC1: Ubiquitin-fold 98.7 3.2E-09 6.9E-14 84.7 0.3 97 4-108 23-135 (161)
26 KOG0897 Predicted ubiquitin-co 98.7 1.8E-08 3.9E-13 77.5 4.3 65 54-120 13-80 (122)
27 KOG3357 Uncharacterized conser 98.3 9.4E-07 2E-11 69.7 4.7 101 4-112 26-143 (167)
28 PF14461 Prok-E2_B: Prokaryoti 98.1 3.8E-06 8.3E-11 67.1 3.9 68 50-117 34-106 (133)
29 PF05743 UEV: UEV domain; Int 97.9 1.5E-05 3.2E-10 62.9 4.8 77 34-118 32-118 (121)
30 KOG2391 Vacuolar sorting prote 97.2 0.00084 1.8E-08 61.0 6.5 81 33-121 51-141 (365)
31 PF14462 Prok-E2_E: Prokaryoti 96.7 0.0071 1.5E-07 47.8 7.1 91 23-115 12-119 (122)
32 PF05773 RWD: RWD domain; Int 95.5 0.039 8.4E-07 41.5 5.8 68 7-75 3-72 (113)
33 smart00591 RWD domain in RING 95.1 0.13 2.8E-06 38.3 7.4 25 51-75 40-64 (107)
34 PF14457 Prok-E2_A: Prokaryoti 89.0 0.25 5.4E-06 40.9 1.9 61 55-117 56-126 (162)
35 KOG0309 Conserved WD40 repeat- 75.8 10 0.00022 38.6 7.3 68 7-76 422-491 (1081)
36 PF09765 WD-3: WD-repeat regio 71.7 4.3 9.2E-05 36.7 3.4 86 7-116 101-187 (291)
37 KOG4018 Uncharacterized conser 71.2 15 0.00033 31.7 6.4 64 10-76 7-73 (215)
38 PF09889 DUF2116: Uncharacteri 43.3 15 0.00033 25.3 1.4 20 215-234 39-58 (59)
39 PF15378 DUF4605: Domain of un 41.1 27 0.00058 24.2 2.3 18 216-233 33-50 (60)
40 PF11587 Prion_bPrPp: Major pr 39.4 33 0.00072 20.2 2.2 13 215-227 7-19 (29)
41 PF14147 Spore_YhaL: Sporulati 39.1 32 0.0007 23.0 2.4 19 214-232 1-20 (52)
42 PF03366 YEATS: YEATS family; 39.0 94 0.002 22.7 5.2 46 35-82 2-47 (84)
43 PF06113 BRE: Brain and reprod 38.3 41 0.0009 31.1 3.8 27 48-74 61-87 (333)
44 KOG4445 Uncharacterized conser 31.6 51 0.0011 30.2 3.2 26 52-77 45-70 (368)
45 cd00421 intradiol_dioxygenase 29.4 60 0.0013 26.0 3.1 25 51-75 65-90 (146)
46 smart00340 HALZ homeobox assoc 27.6 50 0.0011 21.2 1.8 14 7-20 21-34 (44)
47 TIGR02230 ATPase_gene1 F0F1-AT 27.4 65 0.0014 24.5 2.7 23 213-235 35-57 (100)
48 PF06624 RAMP4: Ribosome assoc 26.8 22 0.00049 24.7 0.1 20 210-229 34-53 (63)
49 PF05781 MRVI1: MRVI1 protein; 26.8 49 0.0011 32.5 2.4 17 216-232 480-496 (538)
50 cd03457 intradiol_dioxygenase_ 26.7 70 0.0015 27.0 3.1 26 50-75 85-110 (188)
51 PF06113 BRE: Brain and reprod 26.2 69 0.0015 29.6 3.2 24 52-75 306-329 (333)
52 KOG1047 Bifunctional leukotrie 25.1 62 0.0013 32.1 2.8 29 48-77 249-280 (613)
53 COG4890 Predicted outer membra 22.5 96 0.0021 19.1 2.3 16 218-233 8-23 (37)
54 COG5349 Uncharacterized protei 21.8 64 0.0014 25.6 1.8 24 213-236 83-106 (126)
55 cd05845 Ig2_L1-CAM_like Second 21.7 1.5E+02 0.0032 22.1 3.7 26 49-76 16-41 (95)
56 cd03459 3,4-PCD Protocatechuat 21.5 1E+02 0.0022 25.2 3.1 25 51-75 72-101 (158)
57 COG3140 Uncharacterized protei 21.0 1.4E+02 0.003 20.4 3.0 25 1-25 28-52 (60)
58 PF06170 DUF983: Protein of un 20.7 74 0.0016 23.4 1.9 24 213-236 51-74 (86)
No 1
>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-52 Score=348.97 Aligned_cols=237 Identities=60% Similarity=1.024 Sum_probs=204.8
Q ss_pred CCcHHHHHHHHHHHHHHhhCCCCCEEEEeCCCCceeEEEEEEcCCCCCCCCcEEEEEEECCCCCCCCCCceeecCCCcee
Q 026499 1 MAEKACVKRLQKEYRALCKEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPNGRF 80 (237)
Q Consensus 1 Mas~~~~kRL~kE~~~l~~~~~~gi~v~p~~~nl~~W~~~i~GP~gTpYegG~f~~~i~fP~~YP~~pP~v~F~tPn~~v 80 (237)
||++++.+||+|||+.|+++|.++|.++|.++|+.+||.+|.||+||||+||.|+..|.||.+||++||.|+++|||+++
T Consensus 1 ma~k~a~kRl~keY~~l~k~Pv~~i~A~P~p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTPNGRF 80 (244)
T KOG0894|consen 1 MASKAAVKRLQKEYRALCKDPVPYIVARPNPNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITPNGRF 80 (244)
T ss_pred CcchHHHHHHHHHHHHHHhCCchhhccCCCccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECCCCce
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceEeeccCCCCCCCCCCccchhhhhhhhccccccCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHHHHHH
Q 026499 81 MTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEKY 160 (237)
Q Consensus 81 ~~~G~ICl~iL~~~~~~WsP~~~i~~vL~~I~~lL~~pnp~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~~r~~v~k~ 160 (237)
-.+-++||+|.++|++.|+|+|++++||.+|.++|.+..|..+++++...+|+++|+.|..|+++...|++.+.|+|++|
T Consensus 81 ktntRLCLSiSDfHPdsWNP~WsVStILtGLlSFM~e~~pTtGSI~tS~~~kr~lA~~SlaFN~kn~~F~~lFPE~Vee~ 160 (244)
T KOG0894|consen 81 KTNTRLCLSISDFHPDSWNPGWSVSTILTGLLSFMTEDSPTTGSIETSDQDKRMLAKSSLAFNLKNPKFCELFPEVVEEY 160 (244)
T ss_pred ecCceEEEeccccCcCcCCCcccHHHHHHHHHHHHhcCCCccCcccccHHHHHHHHHhhhhhccCChHHHHHhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHhhhhhcCC-CCC---CCCCCCCcccccC-CCCCCcccCCCchHHhhcccC-CCchHHHHHHHHHHHHHHhhcc
Q 026499 161 NEQQLAEQRVSEQLS-PES---PNEENSRPKVEKV-GSGEDMKTIDTPKEARKNRKQ-SFPTWMLLLLVSIFGIVMALPL 234 (237)
Q Consensus 161 a~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 234 (237)
.+++..+++...++. .++ ..........++. ..+..-....+++..++|.|+ -.|.|..++++++||++||+||
T Consensus 161 nq~~~a~~~a~~~~t~~e~~~~p~~~~~~v~~e~~l~~~~~~~a~~~l~~~~~n~k~~gl~~~~~~~~~v~~g~a~~~~~ 240 (244)
T KOG0894|consen 161 NQEQLAKQAAAVQGTTPEANGVPAAEFALVENEEILDLGHGRGAEGGLKNLPFNSKQDGLPGWALLALLVFFGFAAALPL 240 (244)
T ss_pred HHHHHHhhhhcccCCCcCcccCcchhhhccCccceecCCcccccchhhccccccchhccccchhHHHHHHHHHHHHHHhh
Confidence 999988873332221 111 1112222222222 111112223455667777666 6799999999999999999999
Q ss_pred CCC
Q 026499 235 LQL 237 (237)
Q Consensus 235 ~~~ 237 (237)
+|+
T Consensus 241 ~~~ 243 (244)
T KOG0894|consen 241 VQL 243 (244)
T ss_pred hcc
Confidence 986
No 2
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-46 Score=298.02 Aligned_cols=143 Identities=25% Similarity=0.640 Sum_probs=133.7
Q ss_pred HHHHHHHHHHHhhCCCCCEEEEeCCCCceeEEEEEEcCCCCCCCCcEEEEEEECCCCCCCCCCceeecCC--CceecCCc
Q 026499 7 VKRLQKEYRALCKEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRFMTQK 84 (237)
Q Consensus 7 ~kRL~kE~~~l~~~~~~gi~v~p~~~nl~~W~~~i~GP~gTpYegG~f~~~i~fP~~YP~~pP~v~F~tP--n~~v~~~G 84 (237)
.+||.+|+++|.+++++||++.++++|+++|+++|.||.|||||||+|++.|.||++||++||+|+|.|+ |+||+..|
T Consensus 3 ~~RI~kE~~~l~~dp~~~~~~~~~~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~~~G 82 (148)
T KOG0417|consen 3 SKRIIKELQDLLRDPPPGCSAGPVGDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNIDSNG 82 (148)
T ss_pred HHHHHHHHHHHhcCCCCCCccCCCCCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCcCccc
Confidence 3699999999999999999999999999999999999999999999999999999999999999999994 33377999
Q ss_pred eEeeccCCCCCCCCCCccchhhhhhhhccccccCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHhh
Q 026499 85 KLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEKYNE 162 (237)
Q Consensus 85 ~ICl~iL~~~~~~WsP~~~i~~vL~~I~~lL~~pnp~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~~r~~v~k~a~ 162 (237)
+||+|||+ ++|+|+++|+.||++|++||.+|||+++ +.+..|+ +|++|+..|.++||+||.+||.
T Consensus 83 ~IclDILk---~~WsPAl~i~~VllsI~sLL~~PnpddP-L~~~ia~---------~~k~d~~~~~~~ARewt~kyA~ 147 (148)
T KOG0417|consen 83 RICLDILK---DQWSPALTISKVLLSICSLLSDPNPDDP-LVPDIAE---------LYKTDRAKYERTAREWTRKYAM 147 (148)
T ss_pred cchHHhhh---ccCChhhHHHHHHHHHHHHhcCCCCCcc-ccHHHHH---------HHHhhHHHHHHHHHHHHHHHhc
Confidence 99999998 8899999999999999999999999998 5555554 8999999999999999999996
No 3
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-45 Score=298.51 Aligned_cols=149 Identities=28% Similarity=0.654 Sum_probs=139.0
Q ss_pred CCcHHHHHHHHHHHHHHhhCCCCCEEEEeCCC-CceeEEEEEEcCCCCCCCCcEEEEEEECCCCCCCCCCceeecCC--C
Q 026499 1 MAEKACVKRLQKEYRALCKEPVSHVVARPSPN-DILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--N 77 (237)
Q Consensus 1 Mas~~~~kRL~kE~~~l~~~~~~gi~v~p~~~-nl~~W~~~i~GP~gTpYegG~f~~~i~fP~~YP~~pP~v~F~tP--n 77 (237)
|++..+.+||++|++.|+++++++|++.|.++ |+++|+++|.||++||||||+|++.|.||++||++||+|+|.|+ |
T Consensus 1 ~~s~~a~~RL~kE~~~l~~~~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~H 80 (153)
T COG5078 1 MSSPSALKRLLKELKKLQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFH 80 (153)
T ss_pred CCchhHHHHHHHHHHHHhcCCCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcC
Confidence 67767999999999999999999999999877 99999999999999999999999999999999999999999994 3
Q ss_pred ceecCCceEeeccCCCCCCCCCCccchhhhhhhhccccccCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHHH
Q 026499 78 GRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYV 157 (237)
Q Consensus 78 ~~v~~~G~ICl~iL~~~~~~WsP~~~i~~vL~~I~~lL~~pnp~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~~r~~v 157 (237)
++|+.+|+||++||+ ++|+|+++|++||++|++||.+||+++| +|.++|. +|++|+++|.++||+++
T Consensus 81 PNV~~~G~vCLdIL~---~~WsP~~~l~sILlsl~slL~~PN~~~P-ln~daa~---------~~~~d~~~y~~~vr~~~ 147 (153)
T COG5078 81 PNVDPSGNVCLDILK---DRWSPVYTLETILLSLQSLLLSPNPDSP-LNTEAAT---------LYREDKEEYEKKVREWV 147 (153)
T ss_pred CCcCCCCCChhHHHh---CCCCccccHHHHHHHHHHHHcCCCCCCC-CChHHHH---------HHHhCHHHHHHHHHHHH
Confidence 337889999999998 9999999999999999999999999998 6777765 88999999999999999
Q ss_pred HHHhh
Q 026499 158 EKYNE 162 (237)
Q Consensus 158 ~k~a~ 162 (237)
++|+.
T Consensus 148 ~~~~~ 152 (153)
T COG5078 148 KKYAE 152 (153)
T ss_pred HHhcc
Confidence 99975
No 4
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.6e-42 Score=267.40 Aligned_cols=147 Identities=29% Similarity=0.606 Sum_probs=135.7
Q ss_pred CCcHHHHHHHHHHHHHHhhCCCCCEEEEeCCCCceeEEEEEEcCCCCCCCCcEEEEEEECCCCCCCCCCceeecC--CCc
Q 026499 1 MAEKACVKRLQKEYRALCKEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT--PNG 78 (237)
Q Consensus 1 Mas~~~~kRL~kE~~~l~~~~~~gi~v~p~~~nl~~W~~~i~GP~gTpYegG~f~~~i~fP~~YP~~pP~v~F~t--Pn~ 78 (237)
|+. .+.+||+++++.|+++++.||+..|.++|+++|.++|+||++|||+||+|++.|.|+++||.+||.|+|.+ -|+
T Consensus 1 Mst-pArrrLmrDfkrlqedpp~gisa~P~~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFHP 79 (152)
T KOG0419|consen 1 MST-PARRRLMRDFKRLQEDPPAGISAAPVENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFHP 79 (152)
T ss_pred CCc-hHHHHHHHHHHHhhcCCCCCccCCCCccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeeccCC
Confidence 675 78899999999999999999999999999999999999999999999999999999999999999999999 133
Q ss_pred eecCCceEeeccCCCCCCCCCCccchhhhhhhhccccccCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHHHH
Q 026499 79 RFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVE 158 (237)
Q Consensus 79 ~v~~~G~ICl~iL~~~~~~WsP~~~i~~vL~~I~~lL~~pnp~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~~r~~v~ 158 (237)
+||.+|.||+++|. ..|+|.|++.+||++||+||.+|||++| .|.++| .+|++++.+|.+.+++.|+
T Consensus 80 Nvya~G~iClDiLq---NrWsp~Ydva~ILtsiQslL~dPn~~sP-aN~eAA---------~Lf~e~~rey~rrVk~~ve 146 (152)
T KOG0419|consen 80 NVYADGSICLDILQ---NRWSPTYDVASILTSIQSLLNDPNPNSP-ANSEAA---------RLFSENKREYERRVKETVE 146 (152)
T ss_pred CcCCCCcchHHHHh---cCCCCchhHHHHHHHHHHHhcCCCCCCc-ccHHHH---------HHHhhChHHHHHHHHHHHH
Confidence 48999999999997 8999999999999999999999999997 565555 3899999999999999988
Q ss_pred HHh
Q 026499 159 KYN 161 (237)
Q Consensus 159 k~a 161 (237)
+.-
T Consensus 147 qsw 149 (152)
T KOG0419|consen 147 QSW 149 (152)
T ss_pred Hhh
Confidence 653
No 5
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=1.7e-41 Score=277.37 Aligned_cols=144 Identities=25% Similarity=0.611 Sum_probs=134.4
Q ss_pred HHHHHHHHHHHHhhCCCCCEEEEeCCCCceeEEEEEEcCCCCCCCCcEEEEEEECCCCCCCCCCceeecCC--CceecCC
Q 026499 6 CVKRLQKEYRALCKEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRFMTQ 83 (237)
Q Consensus 6 ~~kRL~kE~~~l~~~~~~gi~v~p~~~nl~~W~~~i~GP~gTpYegG~f~~~i~fP~~YP~~pP~v~F~tP--n~~v~~~ 83 (237)
+.+||++|+++|++++++|+.+.+.++|+++|+++|.||+||||+||.|+++|.||++||++||+|+|.|+ |+||+.+
T Consensus 3 ~~kRl~~E~~~l~~~~~~~i~~~~~~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV~~~ 82 (152)
T PTZ00390 3 ISKRIEKETQNLANDPPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKL 82 (152)
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEECCCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeeceECCC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999994 3447889
Q ss_pred ceEeeccCCCCCCCCCCccchhhhhhhhccccccCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHhh
Q 026499 84 KKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEKYNE 162 (237)
Q Consensus 84 G~ICl~iL~~~~~~WsP~~~i~~vL~~I~~lL~~pnp~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~~r~~v~k~a~ 162 (237)
|.||+++|+ ++|+|+++|.+||++|++||.+|+++++ +|.++|+ +|.+|++.|+++|++|+++||.
T Consensus 83 G~iCl~iL~---~~W~p~~ti~~iL~~i~~ll~~P~~~~p-ln~~aa~---------~~~~d~~~f~~~a~~~~~~~a~ 148 (152)
T PTZ00390 83 GRICLDILK---DKWSPALQIRTVLLSIQALLSAPEPDDP-LDTSVAD---------HFKNNRADAEKVAREWNQKYAK 148 (152)
T ss_pred CeEECccCc---ccCCCCCcHHHHHHHHHHHHhCCCCCCc-hHHHHHH---------HHHHCHHHHHHHHHHHHHHHhc
Confidence 999999997 8999999999999999999999999997 5655554 8999999999999999999997
No 6
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=100.00 E-value=4.6e-41 Score=273.48 Aligned_cols=143 Identities=29% Similarity=0.650 Sum_probs=132.7
Q ss_pred HHHHHHHHHHHhhCCCCCEEEEeCCCCceeEEEEEEcCCCCCCCCcEEEEEEECCCCCCCCCCceeecCC--CceecCCc
Q 026499 7 VKRLQKEYRALCKEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRFMTQK 84 (237)
Q Consensus 7 ~kRL~kE~~~l~~~~~~gi~v~p~~~nl~~W~~~i~GP~gTpYegG~f~~~i~fP~~YP~~pP~v~F~tP--n~~v~~~G 84 (237)
.+||++|+++|++++++|+.+.+.++|+++|+++|.||+||||+||.|++.|.||++||++||+|+|.|+ |++|+.+|
T Consensus 3 ~~Rl~kE~~~l~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~~~G 82 (147)
T PLN00172 3 TKRIQKEHKDLLKDPPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNINSNG 82 (147)
T ss_pred HHHHHHHHHHHHhCCCCCeEEEECCCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceECCCC
Confidence 4999999999999999999999999999999999999999999999999999999999999999999994 34478899
Q ss_pred eEeeccCCCCCCCCCCccchhhhhhhhccccccCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHhh
Q 026499 85 KLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEKYNE 162 (237)
Q Consensus 85 ~ICl~iL~~~~~~WsP~~~i~~vL~~I~~lL~~pnp~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~~r~~v~k~a~ 162 (237)
.||+++|+ ++|+|+++|++||++|++||.+||++++ +|.++|+ +|.+|++.|.++||+|+++||.
T Consensus 83 ~iCl~il~---~~W~p~~ti~~il~~i~~ll~~P~~~~p-~n~~aa~---------~~~~~~~~f~~~a~~~~~~~a~ 147 (147)
T PLN00172 83 SICLDILR---DQWSPALTVSKVLLSISSLLTDPNPDDP-LVPEIAR---------VFKENRSRYEATAREWTQRYAT 147 (147)
T ss_pred EEEcccCc---CCCCCcCcHHHHHHHHHHHHhCCCCCCc-hHHHHHH---------HHHHCHHHHHHHHHHHHHHhhC
Confidence 99999997 8999999999999999999999999987 5555553 8889999999999999999973
No 7
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-36 Score=240.62 Aligned_cols=150 Identities=24% Similarity=0.499 Sum_probs=133.1
Q ss_pred CCcHHHHHHHHHHHHHHhhCCCCCEEEEeCC-CCceeEEEEEEcCCCCCCCCcEEEEEEECCCCCCCCCCceeecC----
Q 026499 1 MAEKACVKRLQKEYRALCKEPVSHVVARPSP-NDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT---- 75 (237)
Q Consensus 1 Mas~~~~kRL~kE~~~l~~~~~~gi~v~p~~-~nl~~W~~~i~GP~gTpYegG~f~~~i~fP~~YP~~pP~v~F~t---- 75 (237)
|++.++..-|+++|++|++++..|+.+...+ +|+++|.+.|.||++|+|+||+|+..+.||.+||++||+++|.|
T Consensus 1 m~~~~a~~ll~~qlk~L~~~pv~gf~~glvd~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwH 80 (171)
T KOG0425|consen 1 MTSSQASLLLLKQLKELQEEPVEGFSVGLVDDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWH 80 (171)
T ss_pred CccchhHHHHHHHHHHHhcCCCCccccccccCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcC
Confidence 6777788899999999999999999998765 59999999999999999999999999999999999999999999
Q ss_pred CCceecCCceEeeccCCCC----------CCCCCCccchhhhhhhhccccccCCCCCCCCCChHHHHHHHHHHHHHhccC
Q 026499 76 PNGRFMTQKKLCLSMSDFH----------PESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCK 145 (237)
Q Consensus 76 Pn~~v~~~G~ICl~iL~~~----------~~~WsP~~~i~~vL~~I~~lL~~pnp~~~~~~~~~a~~~~la~~s~~~~~~ 145 (237)
|| ||.+|+||++||... .+.|+|.+|+++||++|.+||.+||.++| . |.+|+ ..|+++
T Consensus 81 PN--vy~~G~vCISILH~pgdD~~gyE~~~erW~Pv~tvetIllSiIsmL~~PN~~SP-A-NVDAa--------~~~Ren 148 (171)
T KOG0425|consen 81 PN--VYEDGDVCISILHPPGDDPSGYELPSERWLPVQTVETILLSIISMLNSPNDESP-A-NVDAA--------KEWREN 148 (171)
T ss_pred CC--cCCCCCEEEEeecCCCCCcccCCChhhccCCccchhHhHHHHHHHHcCCCCCCc-c-chHHH--------HHHhhC
Confidence 66 899999999999422 15899999999999999999999888775 4 44442 378899
Q ss_pred hHHHHHHHHHHHHHHhh
Q 026499 146 NPAFRKLFPEYVEKYNE 162 (237)
Q Consensus 146 ~~~f~~~~r~~v~k~a~ 162 (237)
+++|.++++++|.+...
T Consensus 149 ~~EykkkV~r~vr~s~e 165 (171)
T KOG0425|consen 149 PEEYKKKVRRCVRRSQE 165 (171)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999987654
No 8
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-36 Score=237.80 Aligned_cols=150 Identities=23% Similarity=0.480 Sum_probs=133.8
Q ss_pred CCcHHHHHHHHHHHHHHhhCCCCCEEEEeCC-----CCceeEEEEEEcCCCCCCCCcEEEEEEECCCCCCCCCCceeecC
Q 026499 1 MAEKACVKRLQKEYRALCKEPVSHVVARPSP-----NDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT 75 (237)
Q Consensus 1 Mas~~~~kRL~kE~~~l~~~~~~gi~v~p~~-----~nl~~W~~~i~GP~gTpYegG~f~~~i~fP~~YP~~pP~v~F~t 75 (237)
|++ .++.||+.|-+.+.++.+-|+++.|.. .|++.|+|.|.|++||+||||.|.+.+.||++||++||+++|.+
T Consensus 1 ~s~-~~~~rl~eErk~wrk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~ 79 (158)
T KOG0424|consen 1 MSG-IALNRLAEERKKWRKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKP 79 (158)
T ss_pred Ccc-hHHHHHHHHHHHHhhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCC
Confidence 555 679999999999999999999999853 48999999999999999999999999999999999999999999
Q ss_pred C--CceecCCceEeeccCCCCCCCCCCccchhhhhhhhccccccCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHH
Q 026499 76 P--NGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLF 153 (237)
Q Consensus 76 P--n~~v~~~G~ICl~iL~~~~~~WsP~~~i~~vL~~I~~lL~~pnp~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~~ 153 (237)
| |.+||.+|.|||+||+. ..+|+|+.||.+||++|+.||.+||+.++ . +.+|. ..|.+|+..|+++|
T Consensus 80 pl~HPNVypsgtVcLsiL~e-~~~W~paitikqiL~gIqdLL~~Pn~~~p-A-q~eA~--------~~~~~~r~eYekrv 148 (158)
T KOG0424|consen 80 PLFHPNVYPSGTVCLSILNE-EKDWRPAITIKQILLGIQDLLDTPNITSP-A-QTEAY--------TIYCQDRAEYEKRV 148 (158)
T ss_pred CCcCCCcCCCCcEehhhhcc-ccCCCchhhHHHHHHHHHHHhcCCCCCCc-h-hhHHH--------HHHhhCHHHHHHHH
Confidence 6 45599999999999982 13599999999999999999999999986 3 33332 48999999999999
Q ss_pred HHHHHHHhh
Q 026499 154 PEYVEKYNE 162 (237)
Q Consensus 154 r~~v~k~a~ 162 (237)
|.++++|+.
T Consensus 149 r~qak~~a~ 157 (158)
T KOG0424|consen 149 RAQAKEYAK 157 (158)
T ss_pred HHHHHHhcc
Confidence 999999875
No 9
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-36 Score=247.95 Aligned_cols=148 Identities=21% Similarity=0.468 Sum_probs=135.1
Q ss_pred CCcHHHHHHHHHHHHHHhhCC---CCCEEEEeCCCCceeEEEEEEcCCCCCCCCcEEEEEEECCCCCCCCCCceeecC--
Q 026499 1 MAEKACVKRLQKEYRALCKEP---VSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT-- 75 (237)
Q Consensus 1 Mas~~~~kRL~kE~~~l~~~~---~~gi~v~p~~~nl~~W~~~i~GP~gTpYegG~f~~~i~fP~~YP~~pP~v~F~t-- 75 (237)
|+. +.+||++|++++.+++ -.||.+...++|+.+..+.|.||+|||||||+|.++|+||++|||+||+|+|.|
T Consensus 1 m~~--~~~ri~~e~k~v~~~~eisq~~I~ve~vn~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkI 78 (200)
T KOG0418|consen 1 MSN--AFKRINREQKEVLDDPEISQAGIIVEMVNENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKI 78 (200)
T ss_pred Ccc--HHHHHHHHHHHhccChhhhhcceEEEEccCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeee
Confidence 664 7899999999999988 689999999999999999999999999999999999999999999999999999
Q ss_pred --CCceecCCceEeeccCCCCCCCCCCccchhhhhhhhccccccCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHH
Q 026499 76 --PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLF 153 (237)
Q Consensus 76 --Pn~~v~~~G~ICl~iL~~~~~~WsP~~~i~~vL~~I~~lL~~pnp~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~~ 153 (237)
|||. ..+|.||+|+|+ +.|++++||+++|++||++|..|+|.+|. +|. -+.+|.++++.|.++|
T Consensus 79 wHPnVS-s~tGaICLDilk---d~Wa~slTlrtvLislQalL~~pEp~dPq----Dav------va~qy~~n~~~F~~TA 144 (200)
T KOG0418|consen 79 WHPNVS-SQTGAICLDILK---DQWAASLTLRTVLISLQALLCAPEPKDPQ----DAV------VAEQYVDNYEMFYKTA 144 (200)
T ss_pred ecCCCC-cccccchhhhhh---cccchhhhHHHHHHHHHHHHcCCCCCChH----HHH------HHHHHhhhHHHHHHHH
Confidence 8865 679999999997 99999999999999999999999999873 221 1247999999999999
Q ss_pred HHHHHHHhhhh
Q 026499 154 PEYVEKYNEQQ 164 (237)
Q Consensus 154 r~~v~k~a~~~ 164 (237)
|.|+..||..+
T Consensus 145 r~WT~~fA~~~ 155 (200)
T KOG0418|consen 145 RYWTTEFAGGR 155 (200)
T ss_pred HHHHHHHhCCC
Confidence 99999999875
No 10
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=100.00 E-value=5.8e-36 Score=240.86 Aligned_cols=137 Identities=34% Similarity=0.759 Sum_probs=120.8
Q ss_pred HHHHHHHHHhhCCCCCEEEEeCCC-CceeEEEEEEcCCCCCCCCcEEEEEEECCCCCCCCCCceeecCC--CceecCCce
Q 026499 9 RLQKEYRALCKEPVSHVVARPSPN-DILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRFMTQKK 85 (237)
Q Consensus 9 RL~kE~~~l~~~~~~gi~v~p~~~-nl~~W~~~i~GP~gTpYegG~f~~~i~fP~~YP~~pP~v~F~tP--n~~v~~~G~ 85 (237)
||++|+++|+++++.|+.+.+.++ |+++|+++|.||+||||+||.|+++|.||++||++||+|+|.|+ |++|+.+|.
T Consensus 1 Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~~~G~ 80 (140)
T PF00179_consen 1 RLQKELKELQKNPPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNIDENGR 80 (140)
T ss_dssp HHHHHHHHHHHSHTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB-TTSB
T ss_pred CHHHHHHHHhhCCCCCEEEEECCCCChheEEEEEeccCccceeccccccccccccccccccccccccccccccccccccc
Confidence 899999999999999999999876 99999999999999999999999999999999999999999993 455889999
Q ss_pred EeeccCCCCCCCCCCccchhhhhhhhccccccCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHHH
Q 026499 86 LCLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYV 157 (237)
Q Consensus 86 ICl~iL~~~~~~WsP~~~i~~vL~~I~~lL~~pnp~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~~r~~v 157 (237)
||+++|+ .+.|+|+++|.+||.+|+++|.+|+++++ .|.++++ +|.++++.|.++||+|.
T Consensus 81 icl~~l~--~~~W~p~~~i~~il~~i~~ll~~p~~~~~-~n~~a~~---------~~~~~~~~f~~~~~~~~ 140 (140)
T PF00179_consen 81 ICLDILN--PESWSPSYTIESILLSIQSLLSEPNPEDP-LNEEAAE---------LYKNDREEFEKKAREWA 140 (140)
T ss_dssp BGHGGGT--TTTC-TTSHHHHHHHHHHHHHHSTCTTST-SSHHHHH---------HHHHCHHHHHHHHHHH-
T ss_pred chhhhhh--cccCCcccccccHHHHHHHHHhCCCCCCc-chHHHHH---------HHHHCHHHHHHHHHHcC
Confidence 9999986 34699999999999999999999988886 5655554 78899999999999984
No 11
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-35 Score=229.38 Aligned_cols=147 Identities=29% Similarity=0.619 Sum_probs=131.3
Q ss_pred CCcHHHHHHHHHHHHHHhhCCCCCEEEEe-CCCCceeEEEEEEcCCCCCCCCcEEEEEEECCCCCCCCCCceeecC----
Q 026499 1 MAEKACVKRLQKEYRALCKEPVSHVVARP-SPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT---- 75 (237)
Q Consensus 1 Mas~~~~kRL~kE~~~l~~~~~~gi~v~p-~~~nl~~W~~~i~GP~gTpYegG~f~~~i~fP~~YP~~pP~v~F~t---- 75 (237)
|+. .++|||++||++|..++++||.+.| ++||.++|.+.|.||+||+|+||+|..++.||.|||.+||+++|.-
T Consensus 1 m~~-~AlkRLm~EykqLt~~~P~GIvAgP~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~fH 79 (165)
T KOG0426|consen 1 MAG-TALKRLMAEYKQLTLNPPEGIVAGPINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMFH 79 (165)
T ss_pred Cch-hHHHHHHHHHHHHccCCCCcceeCCCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeeccccc
Confidence 564 7899999999999999999999998 4789999999999999999999999999999999999999999987
Q ss_pred CCceecCCceEeeccCCCC----------CCCCCCccchhhhhhhhccccccCCCCCCCCCChHHHHHHHHHHHHHhccC
Q 026499 76 PNGRFMTQKKLCLSMSDFH----------PESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCK 145 (237)
Q Consensus 76 Pn~~v~~~G~ICl~iL~~~----------~~~WsP~~~i~~vL~~I~~lL~~pnp~~~~~~~~~a~~~~la~~s~~~~~~ 145 (237)
|| ||.+|+||++||... .+.|+|.++++.||+++.++|.+||-+++ .|..++ .+++++
T Consensus 80 PN--iy~dG~VCISILHaPGDDP~~YEls~ERWSPVQSvEKILLSV~SMLaEPNdESg-ANvdA~---------~mWRe~ 147 (165)
T KOG0426|consen 80 PN--IYPDGRVCISILHAPGDDPMGYELSAERWSPVQSVEKILLSVVSMLAEPNDESG-ANVDAC---------KMWRED 147 (165)
T ss_pred Cc--ccCCCeEEEEEeeCCCCCCccchhhhhcCChHHHHHHHHHHHHHHHcCCCcccC-cccHHH---------HHHHHh
Confidence 66 899999999999532 26899999999999999999999888776 444443 488999
Q ss_pred hHHHHHHHHHHHHHH
Q 026499 146 NPAFRKLFPEYVEKY 160 (237)
Q Consensus 146 ~~~f~~~~r~~v~k~ 160 (237)
+++|++.++..+.|.
T Consensus 148 R~ef~~i~~~lvrKt 162 (165)
T KOG0426|consen 148 REEFEKIAKRLVRKT 162 (165)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999988764
No 12
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=100.00 E-value=3e-35 Score=237.13 Aligned_cols=138 Identities=32% Similarity=0.687 Sum_probs=125.6
Q ss_pred HHHHHHHHHHhhCCCCCEEEEeCCCCceeEEEEEEcCCCCCCCCcEEEEEEECCCCCCCCCCceeecCC--CceecCCce
Q 026499 8 KRLQKEYRALCKEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRFMTQKK 85 (237)
Q Consensus 8 kRL~kE~~~l~~~~~~gi~v~p~~~nl~~W~~~i~GP~gTpYegG~f~~~i~fP~~YP~~pP~v~F~tP--n~~v~~~G~ 85 (237)
+||++|+++|+++++.|+++.+.++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|+ |++|+.+|.
T Consensus 2 ~Rl~~E~~~l~~~~~~~~~v~~~~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~~~G~ 81 (141)
T cd00195 2 KRLQKELKDLKKDPPSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVDENGK 81 (141)
T ss_pred chHHHHHHHHHhCCCCCeEEEECCCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCCCCCC
Confidence 799999999999999999999999999999999999999999999999999999999999999999983 455789999
Q ss_pred EeeccCCCCCCCCCCccchhhhhhhhccccccCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHHH
Q 026499 86 LCLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYV 157 (237)
Q Consensus 86 ICl~iL~~~~~~WsP~~~i~~vL~~I~~lL~~pnp~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~~r~~v 157 (237)
||+++|+ .+.|+|+++|.+||.+|+++|.+|+++++ .|.++|+ +|.+|++.|.++|++|+
T Consensus 82 icl~~l~--~~~W~p~~~l~~il~~i~~~l~~p~~~~~-~n~~aa~---------~~~~~~~~f~~~~~~~~ 141 (141)
T cd00195 82 ICLSILK--THGWSPAYTLRTVLLSLQSLLNEPNPSDP-LNAEAAK---------LYKENREEFKKKAREWT 141 (141)
T ss_pred CchhhcC--CCCcCCcCcHHHHHHHHHHHHhCCCCCCc-hhHHHHH---------HHHHCHHHHHHHHHHhC
Confidence 9999997 13499999999999999999999999776 5555553 78899999999999974
No 13
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-35 Score=234.90 Aligned_cols=144 Identities=23% Similarity=0.522 Sum_probs=131.2
Q ss_pred cHHHHHHHHHHHHHHhhCCCCCEEEEeCCCCceeEEEEEEcCCCCCCCCcEEEEEEECCCCCCCCCCceeecCC--Ccee
Q 026499 3 EKACVKRLQKEYRALCKEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRF 80 (237)
Q Consensus 3 s~~~~kRL~kE~~~l~~~~~~gi~v~p~~~nl~~W~~~i~GP~gTpYegG~f~~~i~fP~~YP~~pP~v~F~tP--n~~v 80 (237)
++...|||++|+..|+-...+||++.|.+||++.|.++|.||.+|+|+|-.|++.+.||.+||++||+|+|.|| |++|
T Consensus 27 ~~~V~KRLq~ELm~Lmms~~~gISAFP~~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~HPNV 106 (175)
T KOG0421|consen 27 GHSVTKRLQSELMGLMMSNTPGISAFPESDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFHPNV 106 (175)
T ss_pred CchHHHHHHHHHHHHHhcCCCCcccCcCcCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccccCCCc
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999996 4448
Q ss_pred cCCceEeeccCCCCCCCCCCccchhhhhhhhccccccCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHHHHHH
Q 026499 81 MTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEKY 160 (237)
Q Consensus 81 ~~~G~ICl~iL~~~~~~WsP~~~i~~vL~~I~~lL~~pnp~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~~r~~v~k~ 160 (237)
+..|.||++||+ +.|+..|+++.||++||+||-+||-.+| +|..+|+ ++. |.++|++.+.++.+++
T Consensus 107 D~~GnIcLDILk---dKWSa~YdVrTILLSiQSLLGEPNn~SP-LNaqAAe---------lW~-d~~eykk~l~~~Y~~~ 172 (175)
T KOG0421|consen 107 DLSGNICLDILK---DKWSAVYDVRTILLSIQSLLGEPNNSSP-LNAQAAE---------LWS-DQEEYKKYLEALYKEI 172 (175)
T ss_pred cccccchHHHHH---HHHHHHHhHHHHHHHHHHHhCCCCCCCc-chhHHHH---------Hhc-CHHHHHHHHHHHhhcc
Confidence 899999999997 9999999999999999999999998887 6666665 666 9999999888776654
No 14
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=100.00 E-value=3.7e-34 Score=231.77 Aligned_cols=142 Identities=31% Similarity=0.672 Sum_probs=129.2
Q ss_pred HHHHHHHHHHhhCCCCCEEEEeCCC-CceeEEEEEEcCCCCCCCCcEEEEEEECCCCCCCCCCceeecCC--CceecCCc
Q 026499 8 KRLQKEYRALCKEPVSHVVARPSPN-DILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRFMTQK 84 (237)
Q Consensus 8 kRL~kE~~~l~~~~~~gi~v~p~~~-nl~~W~~~i~GP~gTpYegG~f~~~i~fP~~YP~~pP~v~F~tP--n~~v~~~G 84 (237)
+||++|++++++++++|+++.+.++ |+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|| |++|+.+|
T Consensus 1 ~Rl~~E~~~~~~~~~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~~~G 80 (145)
T smart00212 1 KRLLKELKELLKDPPPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVDSSG 80 (145)
T ss_pred ChHHHHHHHHHhCCCCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeECCCC
Confidence 5999999999999999999998765 99999999999999999999999999999999999999999995 55588999
Q ss_pred eEeeccCCCCCCCCCCccchhhhhhhhccccccCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHh
Q 026499 85 KLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEKYN 161 (237)
Q Consensus 85 ~ICl~iL~~~~~~WsP~~~i~~vL~~I~~lL~~pnp~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~~r~~v~k~a 161 (237)
.||+++|. .++|+|+++|.+||.+|+++|.+|+++++ .|.+++ .+|.++++.|.++|++++.+|+
T Consensus 81 ~icl~~l~--~~~W~p~~~l~~il~~i~~~l~~p~~~~~-~n~eaa---------~~~~~~~~~f~~~~~~~~~k~~ 145 (145)
T smart00212 81 EICLDILK--QEKWSPATTLETVLLSIQSLLSEPNPDSP-LNADAA---------TLYKKNREEFKKKAREWTKKYA 145 (145)
T ss_pred CEehhhcC--CCCCCCCCcHHHHHHHHHHHHhCCCCCCc-ccHHHH---------HHHHHCHHHHHHHHHHHHHHhC
Confidence 99999985 26899999999999999999999999886 454444 3788999999999999999874
No 15
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.9e-33 Score=225.45 Aligned_cols=149 Identities=19% Similarity=0.453 Sum_probs=133.3
Q ss_pred HHHHHHHHHHHHhhCCCCCEEEEeCCCCceeEEEEEEcCCCCCCCCcEEEEEEECCCCCCCCCCceeecC----CCceec
Q 026499 6 CVKRLQKEYRALCKEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT----PNGRFM 81 (237)
Q Consensus 6 ~~kRL~kE~~~l~~~~~~gi~v~p~~~nl~~W~~~i~GP~gTpYegG~f~~~i~fP~~YP~~pP~v~F~t----Pn~~v~ 81 (237)
..|||..|+..|.. .+..|...++++.+++|.++||.+|||+||+|+++|.+|++||++.|+|.|.| |||+ .
T Consensus 4 ~~rRid~Dv~KL~~---s~yeV~~ind~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNID-e 79 (189)
T KOG0416|consen 4 GKRRIDTDVMKLLM---SDYEVTIINDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNID-E 79 (189)
T ss_pred cccchhhHHHHHHh---cCCeEEEecCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCCch-h
Confidence 45899999999976 34577778888999999999999999999999999999999999999999999 8876 5
Q ss_pred CCceEeeccCCCCCCCCCCccchhhhhhh-hccccccCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHHHHHH
Q 026499 82 TQKKLCLSMSDFHPESWNPMWSVSSILTG-LLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEKY 160 (237)
Q Consensus 82 ~~G~ICl~iL~~~~~~WsP~~~i~~vL~~-I~~lL~~pnp~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~~r~~v~k~ 160 (237)
.+|.|||++++ ..|+|.|.+..|+.. |-.||..|||.|| +|.+||+ +|.+++++|++++++|+++|
T Consensus 80 ~SGsVCLDViN---QtWSp~yDL~NIfetfLPQLL~YPNp~DP-LN~eAAa---------l~l~~~~~Y~~~v~eY~~kY 146 (189)
T KOG0416|consen 80 ASGSVCLDVIN---QTWSPLYDLVNIFETFLPQLLRYPNPSDP-LNGEAAA---------LYLRDPEEYEEKVKEYIKKY 146 (189)
T ss_pred ccCccHHHHHh---hhhhHHHHHHHHHHHHhHHHhcCCCCCCC-cccHHHH---------HHhcCHHHHHHHHHHHHHHh
Confidence 68999999998 899999999999954 7899999999998 7777775 88999999999999999999
Q ss_pred hhhhhHHhhhh
Q 026499 161 NEQQLAEQRVS 171 (237)
Q Consensus 161 a~~~~~~~~~~ 171 (237)
|.+....++..
T Consensus 147 A~~~~~~~~~~ 157 (189)
T KOG0416|consen 147 ATPEALKEEDL 157 (189)
T ss_pred cChhhhccccc
Confidence 99887655333
No 16
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=1.4e-33 Score=229.06 Aligned_cols=148 Identities=19% Similarity=0.416 Sum_probs=134.2
Q ss_pred HHHHHHHHHHHHhhCCCCCEEEEeCCCCceeEEEEEEcCCCCCCCCcEEEEEEECCCCCCCCCCceeecCC--CceecCC
Q 026499 6 CVKRLQKEYRALCKEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRFMTQ 83 (237)
Q Consensus 6 ~~kRL~kE~~~l~~~~~~gi~v~p~~~nl~~W~~~i~GP~gTpYegG~f~~~i~fP~~YP~~pP~v~F~tP--n~~v~~~ 83 (237)
.++.|.+|++.|...||.||.|.+.++|.+...+.|.||.||||++|+|++.+.+..|||.+||+-+|+|. |++|..+
T Consensus 11 vik~~~kEl~~l~~~PPdGIKV~~NeeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFHPNVaaN 90 (223)
T KOG0423|consen 11 VIKQLAKELKSLDESPPDGIKVVVNEEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIFHPNVAAN 90 (223)
T ss_pred HHHHHHHHHHhcccCCCCceEEecChHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeeccCCcccC
Confidence 57889999999999999999999999999999999999999999999999999999999999999999992 2237899
Q ss_pred ceEeeccCCCCCCCCCCccchhhhhhhhccccccCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHhhh
Q 026499 84 KKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEKYNEQ 163 (237)
Q Consensus 84 G~ICl~iL~~~~~~WsP~~~i~~vL~~I~~lL~~pnp~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~~r~~v~k~a~~ 163 (237)
|+||.+.|+ .+|+|.++|++||+.|.+||..|||++. +|.+++. +..+++++|.++||.|++.|++.
T Consensus 91 GEICVNtLK---kDW~p~LGirHvLltikCLLI~PnPESA-LNEeAGk---------mLLEnYdeYa~rARl~TeIHa~p 157 (223)
T KOG0423|consen 91 GEICVNTLK---KDWNPSLGIRHVLLTIKCLLIEPNPESA-LNEEAGK---------MLLENYDEYARRARLYTEIHAKP 157 (223)
T ss_pred ceehhhhhh---cccCcccchhhHhhhhheeeecCChHHH-HhHHHHH---------HHHHhHHHHHHHHHHHHHhhcCC
Confidence 999999997 9999999999999999999999999985 5544442 45579999999999999999987
Q ss_pred hhH
Q 026499 164 QLA 166 (237)
Q Consensus 164 ~~~ 166 (237)
...
T Consensus 158 ~~~ 160 (223)
T KOG0423|consen 158 KPK 160 (223)
T ss_pred CCC
Confidence 554
No 17
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.7e-31 Score=210.14 Aligned_cols=144 Identities=28% Similarity=0.548 Sum_probs=129.2
Q ss_pred HHHHHHHHHHHHhhCCCCCE-EEEeCCCCceeEEEEEEcCCCCCCCCcEEEEEEECCCCCCCCCCceeecC----CCcee
Q 026499 6 CVKRLQKEYRALCKEPVSHV-VARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT----PNGRF 80 (237)
Q Consensus 6 ~~kRL~kE~~~l~~~~~~gi-~v~p~~~nl~~W~~~i~GP~gTpYegG~f~~~i~fP~~YP~~pP~v~F~t----Pn~~v 80 (237)
+.+||.+|+.+|+++....+ .+..+++|++.|++.|. |.+-||..|.|+++|.||.+|||+||+|.|.| || |
T Consensus 3 a~~Rl~kEL~dl~~~~~~~~rn~~~~e~nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpN--V 79 (153)
T KOG0422|consen 3 APRRLRKELADLQKNKMKFFRNIEVDEANLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPN--V 79 (153)
T ss_pred hhHHHHHHHHHHHhccHHHHhhhhcccccceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCC--C
Confidence 57999999999999887655 34456789999999999 89999999999999999999999999999999 66 7
Q ss_pred cCCceEeeccCCCCCCCCCCccchhhhhhhhccccccCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHHHHHH
Q 026499 81 MTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEKY 160 (237)
Q Consensus 81 ~~~G~ICl~iL~~~~~~WsP~~~i~~vL~~I~~lL~~pnp~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~~r~~v~k~ 160 (237)
++.|.||+.|+. .++|.|+.++.+||++|.+|+.+|+|+.+ +..+.|+ .|.+|+..|.++|.++++||
T Consensus 80 De~gqvClPiis--~EnWkP~T~teqVlqaLi~liN~P~pe~p-lr~dlA~---------ey~~d~~kF~K~Aee~tkK~ 147 (153)
T KOG0422|consen 80 DEKGQVCLPIIS--AENWKPATRTEQVLQALIALINDPEPEHP-LRIDLAE---------EYIKDPKKFVKNAEEFTKKY 147 (153)
T ss_pred CCCCceeeeeee--cccccCcccHHHHHHHHHHHhcCCCcccc-chhhHHH---------HHHHCHHHHHHhHHHHHHHh
Confidence 889999999987 59999999999999999999999999998 5444443 79999999999999999999
Q ss_pred hhhh
Q 026499 161 NEQQ 164 (237)
Q Consensus 161 a~~~ 164 (237)
+..+
T Consensus 148 ~e~r 151 (153)
T KOG0422|consen 148 SEKR 151 (153)
T ss_pred cCcC
Confidence 8764
No 18
>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.7e-28 Score=209.32 Aligned_cols=141 Identities=45% Similarity=0.911 Sum_probs=130.5
Q ss_pred HHHHHHHHHHHHHHhhCCCCCEEEEeCCCCceeEEEEEEcCCCCCCCCcEEEEEEECCCCCCCCCCceeecCCCceecCC
Q 026499 4 KACVKRLQKEYRALCKEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPNGRFMTQ 83 (237)
Q Consensus 4 ~~~~kRL~kE~~~l~~~~~~gi~v~p~~~nl~~W~~~i~GP~gTpYegG~f~~~i~fP~~YP~~pP~v~F~tPn~~v~~~ 83 (237)
+++.|||++|.++|+ +|-..+.+.|.+||+++||++|.||.||-|+||+|+.+|.||.+||++||.+..+|||+++..+
T Consensus 10 npaVkRlmkEa~El~-~Ptd~yha~plEdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTpNGRFE~n 88 (314)
T KOG0428|consen 10 NPAVKRLMKEAAELK-DPTDHYHAQPLEDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTPNGRFEVN 88 (314)
T ss_pred CHHHHHHHHHHHHhc-CchhhhhhccchhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcCCCceeeC
Confidence 368999999999998 7878889999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEeeccCCCCCCCCCCccchhhhhhhhccccc-cCCCCCCCCCChHHHHHHHHHHHHHhccC
Q 026499 84 KKLCLSMSDFHPESWNPMWSVSSILTGLLSFMM-DTSPTTGSVNTTTEEKQRLAKASLAFNCK 145 (237)
Q Consensus 84 G~ICl~iL~~~~~~WsP~~~i~~vL~~I~~lL~-~pnp~~~~~~~~~a~~~~la~~s~~~~~~ 145 (237)
.+|||+|.+.+++.|-|+|+|+..|++|..+|- .|+-.-+++...-.+|++||+-|..|.|.
T Consensus 89 kKiCLSISgyHPEtWqPSWSiRTALlAlIgFmPt~p~GAlGSlDYpp~ERr~LAkkS~e~~ck 151 (314)
T KOG0428|consen 89 KKICLSISGYHPETWQPSWSIRTALLALIGFMPTKPEGALGSLDYPPEERRALAKKSQEFCCK 151 (314)
T ss_pred ceEEEEecCCCccccCcchhHHHHHHHHHccccCCCCCccccCcCCHHHHHHHHHhhcccCcc
Confidence 999999999999999999999999999998884 44555666777788999999999999877
No 19
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=7.8e-29 Score=201.38 Aligned_cols=143 Identities=24% Similarity=0.447 Sum_probs=122.3
Q ss_pred HHHHHHHHHHHHHHhhCCCCCEEE--EeCCCCce--eEEEEEEcCCCCCCCCcEEEEEEECCCCCCCCCCceeecC----
Q 026499 4 KACVKRLQKEYRALCKEPVSHVVA--RPSPNDIL--EWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT---- 75 (237)
Q Consensus 4 ~~~~kRL~kE~~~l~~~~~~gi~v--~p~~~nl~--~W~~~i~GP~gTpYegG~f~~~i~fP~~YP~~pP~v~F~t---- 75 (237)
++++-||++|+.++. .+++++. ....+++. +++++|. |.++.|+||.|+|.+.+|+.||++||+|+|.|
T Consensus 27 s~a~lrl~~di~eln--Lp~t~~~s~~~~~~d~~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV~H 103 (184)
T KOG0420|consen 27 SAALLRLKKDILELN--LPPTCSLSFPDSPDDLNNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKVYH 103 (184)
T ss_pred cHHHHHHHhhhhhcc--CCCccccccccCCcccccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeeecccc
Confidence 367888888888885 4555543 22234433 5999998 89999999999999999999999999999999
Q ss_pred CCceecCCceEeeccCCCCCCCCCCccchhhhhhhhccccccCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHH
Q 026499 76 PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPE 155 (237)
Q Consensus 76 Pn~~v~~~G~ICl~iL~~~~~~WsP~~~i~~vL~~I~~lL~~pnp~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~~r~ 155 (237)
|| |+.+|.|||+||+ ++|+|+.+|.+|+.+++.||.+|+++|+ +|.+||+ ++..|++.|...+|.
T Consensus 104 PN--Id~~GnVCLnILR---edW~P~lnL~sIi~GL~~LF~epn~eDp-LN~eAA~---------~l~~n~e~F~~~Vr~ 168 (184)
T KOG0420|consen 104 PN--IDLDGNVCLNILR---EDWRPVLNLNSIIYGLQFLFLEPNPEDP-LNKEAAA---------VLKSNREGFENNVRR 168 (184)
T ss_pred CC--cCCcchHHHHHHH---hcCccccchHHHHHHHHHHhccCCCccc-ccHHHHH---------HHHhCHHHHHHHHHH
Confidence 66 7889999999998 9999999999999999999999999998 7888876 677899999999999
Q ss_pred HHHHHhhhh
Q 026499 156 YVEKYNEQQ 164 (237)
Q Consensus 156 ~v~k~a~~~ 164 (237)
+...|...+
T Consensus 169 ~m~gg~v~~ 177 (184)
T KOG0420|consen 169 AMSGGCVGQ 177 (184)
T ss_pred HHhcCccCc
Confidence 988877543
No 20
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=5e-28 Score=188.79 Aligned_cols=111 Identities=27% Similarity=0.586 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHHHHhhCCCCCEEEEeCCCCceeEEEEEEcCCCCCCCCcEEEEEEECCCCCCCCCCceeecCC---Ccee
Q 026499 4 KACVKRLQKEYRALCKEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP---NGRF 80 (237)
Q Consensus 4 ~~~~kRL~kE~~~l~~~~~~gi~v~p~~~nl~~W~~~i~GP~gTpYegG~f~~~i~fP~~YP~~pP~v~F~tP---n~~v 80 (237)
+.+.+||+||+.+|+.++|.|+... ..||+..|.+.+.|-+||.|+|..|.+.++||+.||++.|.|.|..| |+||
T Consensus 14 ~~at~RLqKEl~e~q~~pP~G~~~~-v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P~HPHi 92 (161)
T KOG0427|consen 14 KIATNRLQKELSEWQNNPPTGFKHR-VTDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAPLHPHI 92 (161)
T ss_pred HHHHHHHHHHHHHHhcCCCCcceee-cccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCCCCCce
Confidence 4688999999999999999999887 66999999999999999999999999999999999999999999994 6789
Q ss_pred cCCceEeeccCCCCCCCCCCccchhhhhhhhccccccC
Q 026499 81 MTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDT 118 (237)
Q Consensus 81 ~~~G~ICl~iL~~~~~~WsP~~~i~~vL~~I~~lL~~p 118 (237)
|.+|.|||+||. ++|+|++++++|.++|.++|.+-
T Consensus 93 YSNGHICL~iL~---d~WsPAmsv~SvClSIlSMLSSs 127 (161)
T KOG0427|consen 93 YSNGHICLDILY---DSWSPAMSVQSVCLSILSMLSSS 127 (161)
T ss_pred ecCCeEEEEeec---ccCCcchhhHHHHHHHHHHHccC
Confidence 999999999997 99999999999999999999863
No 21
>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=8.6e-18 Score=141.94 Aligned_cols=141 Identities=21% Similarity=0.350 Sum_probs=119.1
Q ss_pred HHHHHHHHHHhhCCCCCEEEEeCCCCceeEEEEEEcCCCCCCCCcEEEEEEECCCCCCC--CCCceeecC----CCceec
Q 026499 8 KRLQKEYRALCKEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPY--KPPGILMIT----PNGRFM 81 (237)
Q Consensus 8 kRL~kE~~~l~~~~~~gi~v~p~~~nl~~W~~~i~GP~gTpYegG~f~~~i~fP~~YP~--~pP~v~F~t----Pn~~v~ 81 (237)
--|..||..+.+.+.+||+|.|+-.|-+.|.++|++..| .|.||+|+|.|.+|++||. .-|+|.|.+ |+|. .
T Consensus 22 y~llAEf~lV~~ekL~gIyviPSyan~l~WFGViFvr~G-iyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~ic-p 99 (258)
T KOG0429|consen 22 YALLAEFVLVCREKLDGIYVIPSYANKLLWFGVIFVRKG-IYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPLIC-P 99 (258)
T ss_pred HHHHHHHHHHHhccCCceEEcccccccceEEEEEEEecc-cccCceEEEEEEcCccCCCcCCCCeEEeeccccccccC-C
Confidence 347889999999999999999999999999999999888 8999999999999999995 579999999 4543 4
Q ss_pred CCceEeeccCCCCCCCCCC-ccchhhhhhhhccccccCCCCCCCC-CChHHHHHHHHHHHHHhccChHHHHHHHHHHHHH
Q 026499 82 TQKKLCLSMSDFHPESWNP-MWSVSSILTGLLSFMMDTSPTTGSV-NTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEK 159 (237)
Q Consensus 82 ~~G~ICl~iL~~~~~~WsP-~~~i~~vL~~I~~lL~~pnp~~~~~-~~~~a~~~~la~~s~~~~~~~~~f~~~~r~~v~k 159 (237)
.++.+|++-. . ..|.- ...|.+||..||.+|.+|+...+.+ |.+++ .+|.+++++|+++++++|+.
T Consensus 100 ~skeLdl~ra--f-~eWRk~ehhiwqvL~ylqriF~dpd~si~kl~N~eAa---------~l~~k~r~ef~~rvqe~vk~ 167 (258)
T KOG0429|consen 100 KSKELDLNRA--F-PEWRKEEHHIWQVLVYLQRIFYDPDVSIDKLINPEAA---------VLYKKHRDEFRERVQECVKA 167 (258)
T ss_pred CccceeHhhh--h-hhhhccccHHHHHHHHHHHHhcCcccchhhhcChHHH---------HHHHHhHHHHHHHHHHHHHH
Confidence 5788999753 3 45965 5699999999999999987776644 44444 48999999999999999987
Q ss_pred Hhh
Q 026499 160 YNE 162 (237)
Q Consensus 160 ~a~ 162 (237)
...
T Consensus 168 sr~ 170 (258)
T KOG0429|consen 168 SRS 170 (258)
T ss_pred HHH
Confidence 643
No 22
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=5.1e-18 Score=168.78 Aligned_cols=117 Identities=26% Similarity=0.512 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHHhhCCCCCEEEEeCCCCceeEEEEEEcCCCCCCCCcEEEEEEECCCCCCCCCCceeecC----CCcee
Q 026499 5 ACVKRLQKEYRALCKEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT----PNGRF 80 (237)
Q Consensus 5 ~~~kRL~kE~~~l~~~~~~gi~v~p~~~nl~~W~~~i~GP~gTpYegG~f~~~i~fP~~YP~~pP~v~F~t----Pn~~v 80 (237)
.+.+..+.|++.|....+.||+|+..++.+....+.|.||.||||++|.|.|.+.||.+||.+||.+.+.+ -|++.
T Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~vr~~e~r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~npnl 930 (1101)
T KOG0895|consen 851 QWAKKVQTEWKILPLSLPSGIFVRAYEDRMDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNPNL 930 (1101)
T ss_pred HHHHHHHHHHHhhhccCCCceEEEechHHHHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCccc
Confidence 45666778888888899999999999998888899999999999999999999999999999999999998 24458
Q ss_pred cCCceEeeccCCCCC----CCCCCccchhhhhhhhccccccCCCC
Q 026499 81 MTQKKLCLSMSDFHP----ESWNPMWSVSSILTGLLSFMMDTSPT 121 (237)
Q Consensus 81 ~~~G~ICl~iL~~~~----~~WsP~~~i~~vL~~I~~lL~~pnp~ 121 (237)
|.+|+||+++|++|. +.|+|+-+|.+||.+||.|..+..|+
T Consensus 931 y~~g~vc~s~l~tw~g~~~e~w~~~s~~lq~l~s~q~l~l~~~py 975 (1101)
T KOG0895|consen 931 YEDGKVCLSLLNTWHGRGNEVWNPSSSILQVLVSIQGLVLNEEPY 975 (1101)
T ss_pred ccccceehhhhccccCCCccccCcchhHHHHHHHhhhhhcccccc
Confidence 999999999999874 67999999999999999999877765
No 23
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=4.5e-16 Score=155.06 Aligned_cols=118 Identities=28% Similarity=0.552 Sum_probs=107.6
Q ss_pred cHHHHHHHHHHHHHHhhCCCCCEEEEeCCCCceeEEEEEEcCCCCCCCCcEEEEEEECCCCCCCCCCceeecCC-----C
Q 026499 3 EKACVKRLQKEYRALCKEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP-----N 77 (237)
Q Consensus 3 s~~~~kRL~kE~~~l~~~~~~gi~v~p~~~nl~~W~~~i~GP~gTpYegG~f~~~i~fP~~YP~~pP~v~F~tP-----n 77 (237)
+..+.+|+++|++.+.++.++|+.+++.+.++...++.|.||.||||++|+|.|+|.||..||..||.+.+.|- |
T Consensus 280 s~~~skrv~ke~~llskdlpEgifvrp~e~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~~R~n 359 (1101)
T KOG0895|consen 280 SKNWSKKVAKELKLLSKDLPEGIFVRPDEGRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGGVRLN 359 (1101)
T ss_pred chhhHHHHHHHhhhhcccCCCCccccccccccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEeeccceeec
Confidence 34688999999999999999999999999999999999999999999999999999999999999999999982 4
Q ss_pred ceecCCceEeeccCCCCC----CCCCCc-cchhhhhhhhccccccCCC
Q 026499 78 GRFMTQKKLCLSMSDFHP----ESWNPM-WSVSSILTGLLSFMMDTSP 120 (237)
Q Consensus 78 ~~v~~~G~ICl~iL~~~~----~~WsP~-~~i~~vL~~I~~lL~~pnp 120 (237)
++.|.+|+||+++|.++. +.|+|. .+|.++|.+|+.++.+..|
T Consensus 360 PNlYn~GKVcLslLgTwtg~~~e~wtp~~~sl~qvL~sIQ~Li~~e~P 407 (1101)
T KOG0895|consen 360 PNLYNDGKVCLSLLGTWTGSRREKWTPNGSSLLQVLESIQGLILNEEP 407 (1101)
T ss_pred CCcccCceEEeeeeeecccccccCCCccccchhhhhhhhhhhhcccCc
Confidence 448889999999997764 579998 7999999999999987644
No 24
>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=1e-10 Score=92.20 Aligned_cols=110 Identities=23% Similarity=0.246 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHhhCCCCCE-EEEeC-CCC--ceeEEEEEEcCCCCCCCCcEEEEEEECCCCCCCCCCceeecCC-C--ce
Q 026499 7 VKRLQKEYRALCKEPVSHV-VARPS-PND--ILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP-N--GR 79 (237)
Q Consensus 7 ~kRL~kE~~~l~~~~~~gi-~v~p~-~~n--l~~W~~~i~GP~gTpYegG~f~~~i~fP~~YP~~pP~v~F~tP-n--~~ 79 (237)
--||.+|+..=++..-+|. +.... .+| +..|..+|.||+-|+||+.+|.++|...++||-.||+|+|.|. | .-
T Consensus 7 nfrlleele~g~kg~g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tkinm~gv 86 (138)
T KOG0896|consen 7 NFRLLEELEEGEKGIGDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKINMNGV 86 (138)
T ss_pred chhhhhhhccccccccCceeeccccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEeeeccc
Confidence 3578888887777655553 22222 233 6789999999999999999999999999999999999999993 1 11
Q ss_pred ecCCceEeeccCCCCCCCCCCccchhhhhhhhcccccc
Q 026499 80 FMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 117 (237)
Q Consensus 80 v~~~G~ICl~iL~~~~~~WsP~~~i~~vL~~I~~lL~~ 117 (237)
...+|.|--..+... .+|+-.|++..+|..++-++..
T Consensus 87 n~~~g~Vd~~~i~~L-~~W~~~y~~~~vl~~lr~~m~~ 123 (138)
T KOG0896|consen 87 NSSNGVVDPRDITVL-ARWQRSYSIKMVLGQLRKEMMS 123 (138)
T ss_pred ccCCCccCccccchh-hcccccchhhHHHHhhhHHHHH
Confidence 134455432111111 7999999999999999865543
No 25
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=98.70 E-value=3.2e-09 Score=84.69 Aligned_cols=97 Identities=24% Similarity=0.483 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHhhCCCCCEEEEeCCCCceeEEEEEEcCCCCCCCCcE----------EEEEEECCCCCCCCCCceee
Q 026499 4 KACVKRLQKEYRALCKEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGY----------YYGKIKFPPEYPYKPPGILM 73 (237)
Q Consensus 4 ~~~~kRL~kE~~~l~~~~~~gi~v~p~~~nl~~W~~~i~GP~gTpYegG~----------f~~~i~fP~~YP~~pP~v~F 73 (237)
..+..||..||..|.+ ++..+.++-.+|.-.=..++||-|.|.+ |.+++.+|..||..||.|..
T Consensus 23 ~~W~~RLKEEy~aLI~------Yv~~nK~~DndWF~lesn~~GT~W~GkCW~~h~l~kYEF~~eFdIP~tYP~t~pEi~l 96 (161)
T PF08694_consen 23 DLWVQRLKEEYQALIK------YVENNKENDNDWFRLESNKEGTRWFGKCWYIHNLLKYEFDLEFDIPVTYPTTAPEIAL 96 (161)
T ss_dssp HHHHHHHHHHHHHHHH------HHHHHHHTT---EEEEE-TTSSEEEEEEEEEETTEEEEEEEEEE--TTTTTS----B-
T ss_pred HHHHHHHHHHHHHHHH------HHHhcccccCCeEEeccCCCCCccccEEEEEeeeeeEEEeeecCCCccCCCCCcceec
Confidence 4689999999999977 3443333444565444567778777754 67788899999999999987
Q ss_pred cC---CCceecCCceEeeccCCCCCCCC---CCccchhhhh
Q 026499 74 IT---PNGRFMTQKKLCLSMSDFHPESW---NPMWSVSSIL 108 (237)
Q Consensus 74 ~t---Pn~~v~~~G~ICl~iL~~~~~~W---sP~~~i~~vL 108 (237)
.. ....+|.+|+||+++ +...-| .|.++|.+.|
T Consensus 97 PeLdGKTaKMYRGGkIClt~--HFkPLWakN~PkfGIaHal 135 (161)
T PF08694_consen 97 PELDGKTAKMYRGGKICLTD--HFKPLWAKNVPKFGIAHAL 135 (161)
T ss_dssp GGGTTT-SSBCCCCBB---T--THHHHHHCTTTT--HHHHH
T ss_pred cccCCchhhhhcCceEeeec--ccchhhhhcCCchhHHHHH
Confidence 66 344589999999986 334556 6788888775
No 26
>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=1.8e-08 Score=77.50 Aligned_cols=65 Identities=12% Similarity=0.385 Sum_probs=56.5
Q ss_pred EEEEEECCCCCCCCCCceeecCCCce---ecCCceEeeccCCCCCCCCCCccchhhhhhhhccccccCCC
Q 026499 54 YYGKIKFPPEYPYKPPGILMITPNGR---FMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSP 120 (237)
Q Consensus 54 f~~~i~fP~~YP~~pP~v~F~tPn~~---v~~~G~ICl~iL~~~~~~WsP~~~i~~vL~~I~~lL~~pnp 120 (237)
.-+.+.|+++||+.||.++...|+++ +-.+|.||+.+|+ +++|+.+|+++.++++|...+....-
T Consensus 13 ill~~~f~~~fp~~ppf~rvv~p~~~~Gyvl~ggAIcmellt--~qgwssay~Ve~vi~qiaatlVkG~~ 80 (122)
T KOG0897|consen 13 ILLLDIFDDNFPFMPPFPRVVKPLEDEGYVLEGGAICMELLT--KQGWSSAYEVERVIMQIAATLVKGGA 80 (122)
T ss_pred eEeeeecccCCCCCCCcceeeeecccCCEEecchhhHHHHHc--cccccchhhHHHHHHHHHHHhhccce
Confidence 45678999999999999999998654 6779999999997 59999999999999999999876543
No 27
>KOG3357 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.29 E-value=9.4e-07 Score=69.73 Aligned_cols=101 Identities=22% Similarity=0.475 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHhhCCCCCEEEEeCCCCceeEEEEEEcCCCCCCCCcE----------EEEEEECCCCCCCCCCceee
Q 026499 4 KACVKRLQKEYRALCKEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGY----------YYGKIKFPPEYPYKPPGILM 73 (237)
Q Consensus 4 ~~~~kRL~kE~~~l~~~~~~gi~v~p~~~nl~~W~~~i~GP~gTpYegG~----------f~~~i~fP~~YP~~pP~v~F 73 (237)
..+.+||..||+.|.. +++-+.++-..|.-.-..++||-|-|.. |.+++.+|-.||..+|.|-.
T Consensus 26 ~~wvqrlkeey~sli~------yvqnnk~~d~dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tapeial 99 (167)
T KOG3357|consen 26 DLWVQRLKEEYQSLIA------YVQNNKSNDNDWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPEIAL 99 (167)
T ss_pred hHHHHHHHHHHHHHHH------HHHhCcccCCcceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCccccc
Confidence 3689999999999976 3444445555676666779999998864 66778899999999999876
Q ss_pred cC---CCceecCCceEeeccCCCCCCCC---CCccchhhhh-hhhc
Q 026499 74 IT---PNGRFMTQKKLCLSMSDFHPESW---NPMWSVSSIL-TGLL 112 (237)
Q Consensus 74 ~t---Pn~~v~~~G~ICl~iL~~~~~~W---sP~~~i~~vL-~~I~ 112 (237)
.- ....+|.+|+||+.. +.+.-| .|.++|.+.+ +++-
T Consensus 100 peldgktakmyrggkiclt~--hfkplwarn~pkfgiaha~algl~ 143 (167)
T KOG3357|consen 100 PELDGKTAKMYRGGKICLTD--HFKPLWARNVPKFGIAHAMALGLA 143 (167)
T ss_pred cccCchhhhhhcCceEeecc--ccchhhhhcCcchhHHHHHHhccc
Confidence 54 233478999999974 445677 5677777664 3443
No 28
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=98.06 E-value=3.8e-06 Score=67.12 Aligned_cols=68 Identities=25% Similarity=0.590 Sum_probs=56.3
Q ss_pred CCcEEEEEEECCCCCCCCCCceeecCC-----CceecCCceEeeccCCCCCCCCCCccchhhhhhhhcccccc
Q 026499 50 AGGYYYGKIKFPPEYPYKPPGILMITP-----NGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 117 (237)
Q Consensus 50 egG~f~~~i~fP~~YP~~pP~v~F~tP-----n~~v~~~G~ICl~iL~~~~~~WsP~~~i~~vL~~I~~lL~~ 117 (237)
.|+.|.+.|.||++||..||.|....| -.|++.+|.+|+---....+.|.|.-.+..+|.....+|.+
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~~G~LCl~~~~~~~D~~~P~~~~~~~l~~a~~lL~~ 106 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVESDGKLCLLDEELVLDPWDPEGIIADCLERAIRLLED 106 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcCCCeEEEecCCcccCccCHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999987763 24688999999931112238999999999999999999974
No 29
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=97.92 E-value=1.5e-05 Score=62.93 Aligned_cols=77 Identities=21% Similarity=0.437 Sum_probs=53.7
Q ss_pred ceeEEEEEEcCCCCCCCCcEE--EEEEECCCCCCCCCCceeecC-------CCceecCCceEeeccCCCCCCCCCC-ccc
Q 026499 34 ILEWHYVLEGSNGTPFAGGYY--YGKIKFPPEYPYKPPGILMIT-------PNGRFMTQKKLCLSMSDFHPESWNP-MWS 103 (237)
Q Consensus 34 l~~W~~~i~GP~gTpYegG~f--~~~i~fP~~YP~~pP~v~F~t-------Pn~~v~~~G~ICl~iL~~~~~~WsP-~~~ 103 (237)
+....++|. -.|+|..| -+.|-||.+||..||.+.... |+-+|+.+|+|.+..| ++|++ ..+
T Consensus 32 LL~L~Gtip----i~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd~~G~v~~pyL----~~W~~~~s~ 103 (121)
T PF05743_consen 32 LLCLYGTIP----ITYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVDSNGRVYLPYL----QNWNPPSSN 103 (121)
T ss_dssp EEEEEEEEE----ECCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB-TTSBB-SHHH----HT--TTTS-
T ss_pred EEEEecCcc----cccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeECCCCCEeCchh----ccCCCCCCC
Confidence 445555554 36888887 466779999999999986543 2346899999999998 68988 779
Q ss_pred hhhhhhhhccccccC
Q 026499 104 VSSILTGLLSFMMDT 118 (237)
Q Consensus 104 i~~vL~~I~~lL~~p 118 (237)
|.+++..+...|.+.
T Consensus 104 L~~lv~~l~~~F~~~ 118 (121)
T PF05743_consen 104 LVDLVQELQAVFSEE 118 (121)
T ss_dssp HHHHHHHHHHCCCHS
T ss_pred HHHHHHHHHHHHhHc
Confidence 999999888888653
No 30
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.21 E-value=0.00084 Score=61.02 Aligned_cols=81 Identities=20% Similarity=0.386 Sum_probs=60.3
Q ss_pred CceeEEEEEEcCCCCCCCCcEEEE--EEECCCCCCCCCCceeecC-C------CceecCCceEeeccCCCCCCCCCC-cc
Q 026499 33 DILEWHYVLEGSNGTPFAGGYYYG--KIKFPPEYPYKPPGILMIT-P------NGRFMTQKKLCLSMSDFHPESWNP-MW 102 (237)
Q Consensus 33 nl~~W~~~i~GP~gTpYegG~f~~--~i~fP~~YP~~pP~v~F~t-P------n~~v~~~G~ICl~iL~~~~~~WsP-~~ 102 (237)
+++...++|. ++|.|-.|.+ .|-+++.||+.||.+.... + +-||+.+|+|.|..| .+|.+ +.
T Consensus 51 ~ll~~~GTIp----~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd~nG~V~LPYL----h~W~~pss 122 (365)
T KOG2391|consen 51 LLLQLDGTIP----VPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVDPNGKVYLPYL----HNWDPPSS 122 (365)
T ss_pred chhhccCccc----ccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccCCCCeEechhh----ccCCCccc
Confidence 4555555554 5788877764 5568999999999874432 1 246899999999999 68976 66
Q ss_pred chhhhhhhhccccccCCCC
Q 026499 103 SVSSILTGLLSFMMDTSPT 121 (237)
Q Consensus 103 ~i~~vL~~I~~lL~~pnp~ 121 (237)
.|..++..+.+.|.++.|.
T Consensus 123 dLv~Liq~l~a~f~~~pP~ 141 (365)
T KOG2391|consen 123 DLVGLIQELIAAFSEDPPV 141 (365)
T ss_pred hHHHHHHHHHHHhcCCCcc
Confidence 8889988888888776553
No 31
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=96.71 E-value=0.0071 Score=47.77 Aligned_cols=91 Identities=15% Similarity=0.297 Sum_probs=60.2
Q ss_pred CCEEEEeCCCCceeEEEEEEc---CCCCCCCCcEEEEEEECCCCCCCCCCceeecCCCceecCCceE--eeccCCC----
Q 026499 23 SHVVARPSPNDILEWHYVLEG---SNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPNGRFMTQKKL--CLSMSDF---- 93 (237)
Q Consensus 23 ~gi~v~p~~~nl~~W~~~i~G---P~gTpYegG~f~~~i~fP~~YP~~pP~v~F~tPn~~v~~~G~I--Cl~iL~~---- 93 (237)
.|+..+...+.-..|.+ |.| |+| .|.+..-.+-|.+|..||..+|.+.+..|....-.+|.| |-+....
T Consensus 12 ~g~~~E~v~eg~~~~li-i~~~~LP~G-~y~~~~~dili~iP~gYP~~~~DmfY~~P~L~~~~G~~iP~~~~~~~~~~G~ 89 (122)
T PF14462_consen 12 RGLRWETVTEGGRRWLI-IKGYPLPEG-KYNHNEVDILILIPPGYPDAPLDMFYVYPPLKLADGGPIPNAAEVTQTFDGR 89 (122)
T ss_pred cCceEEEEEeCCccEEE-EeCCcCCCC-ccCccceEEEEECCCCCCCCCCCcEEECCceEccCCCcCCchhcchhhcCCe
Confidence 35566555455556644 666 555 799999999999999999999999888875442333444 4443211
Q ss_pred -------CCCCCCCcc-chhhhhhhhcccc
Q 026499 94 -------HPESWNPMW-SVSSILTGLLSFM 115 (237)
Q Consensus 94 -------~~~~WsP~~-~i~~vL~~I~~lL 115 (237)
|...|.|.. +|.+.|..|...|
T Consensus 90 ~wQrWSRH~~~W~P~~D~l~T~l~~v~~~L 119 (122)
T PF14462_consen 90 TWQRWSRHNNPWRPGVDDLWTHLARVEHAL 119 (122)
T ss_pred eeeeecCCCCCCCCCCCcHHHHHHHHHHHH
Confidence 135788855 6777766665544
No 32
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=95.53 E-value=0.039 Score=41.53 Aligned_cols=68 Identities=18% Similarity=0.143 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHhhCCCCCEEEEeCCCCceeEEEEEEc--CCCCCCCCcEEEEEEECCCCCCCCCCceeecC
Q 026499 7 VKRLQKEYRALCKEPVSHVVARPSPNDILEWHYVLEG--SNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT 75 (237)
Q Consensus 7 ~kRL~kE~~~l~~~~~~gi~v~p~~~nl~~W~~~i~G--P~gTpYegG~f~~~i~fP~~YP~~pP~v~F~t 75 (237)
..+...|+..|+.-=+..+ ......+...+.+.+.+ ...+.-....+++.+.||++||..+|.|...+
T Consensus 3 ~e~~~~EieaL~sIy~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~ 72 (113)
T PF05773_consen 3 EEQQEEEIEALQSIYPDDF-IEIESKSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLES 72 (113)
T ss_dssp HHHHHHHHHHHHHHSSSSE-SSSTSSSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCc-cccccCCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEc
Confidence 3567888888887322223 22233445566666632 23334445689999999999999999998665
No 33
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=95.06 E-value=0.13 Score=38.31 Aligned_cols=25 Identities=24% Similarity=0.406 Sum_probs=21.6
Q ss_pred CcEEEEEEECCCCCCCCCCceeecC
Q 026499 51 GGYYYGKIKFPPEYPYKPPGILMIT 75 (237)
Q Consensus 51 gG~f~~~i~fP~~YP~~pP~v~F~t 75 (237)
.-.+.+.+.||.+||..+|.|.+.+
T Consensus 40 ~~~~~l~~~~p~~YP~~~P~i~~~~ 64 (107)
T smart00591 40 YVSLTLQVKLPENYPDEAPPISLLN 64 (107)
T ss_pred ceEEEEEEECCCCCCCCCCCeEEEC
Confidence 3568999999999999999998765
No 34
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=89.03 E-value=0.25 Score=40.91 Aligned_cols=61 Identities=28% Similarity=0.575 Sum_probs=45.7
Q ss_pred EEEEECCCCCCCCCCceeecC---C-C-ceecCC-----ceEeeccCCCCCCCCCCccchhhhhhhhcccccc
Q 026499 55 YGKIKFPPEYPYKPPGILMIT---P-N-GRFMTQ-----KKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 117 (237)
Q Consensus 55 ~~~i~fP~~YP~~pP~v~F~t---P-n-~~v~~~-----G~ICl~iL~~~~~~WsP~~~i~~vL~~I~~lL~~ 117 (237)
.+.|.|+.+||+.+|.|.+.- | + .|++.. ..+|+.--. -..|.+..++..+|..|...|.+
T Consensus 56 ~~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~~~~~~p~~lCl~~~~--~~e~~~~~g~~~~l~rl~~Wl~~ 126 (162)
T PF14457_consen 56 RVAIVFPPDSPLSAPEVPALRKDFPGNLPHQNPGPEGEPVSLCLYEGP--WSEWRPSWGPEGFLDRLFDWLRD 126 (162)
T ss_pred eEEEEecCCCCCCCccchhhHhhCCCCCCccCCCCCCCCccceEecCC--HHHhhhccCHHHHHHHHHHHHHH
Confidence 356899999999999776554 2 2 445444 679997543 26789999999999999888754
No 35
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=75.77 E-value=10 Score=38.62 Aligned_cols=68 Identities=18% Similarity=0.212 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHhhCCCCCEEEEeCCCCceeEEEEEEcCCCCCCCCcE-EEEEEECCCCCCCC-CCceeecCC
Q 026499 7 VKRLQKEYRALCKEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGY-YYGKIKFPPEYPYK-PPGILMITP 76 (237)
Q Consensus 7 ~kRL~kE~~~l~~~~~~gi~v~p~~~nl~~W~~~i~GP~gTpYegG~-f~~~i~fP~~YP~~-pP~v~F~tP 76 (237)
.+-|.+|+..|-. ..+.+.++-.+-.-..-.+.+.||-. +=.|-+ .++.|.||.+||.. +|++.|..|
T Consensus 422 pQnLgeE~S~Ig~-k~~nV~fEkidva~Rsctvsln~p~~-~~d~y~flrm~V~FP~nYPn~a~P~Fq~e~~ 491 (1081)
T KOG0309|consen 422 PQNLGEEFSLIGV-KIRNVNFEKIDVADRSCTVSLNCPNH-RVDDYIFLRMLVKFPANYPNNAAPSFQFENP 491 (1081)
T ss_pred hhhHHhHHhHhhc-cccccceEeeccccceEEEEecCCCC-ccccceeEEEEEeccccCCCCCCCceEEecC
Confidence 3457777776643 33344443222223345567776653 223333 47889999999995 799999875
No 36
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=71.69 E-value=4.3 Score=36.74 Aligned_cols=86 Identities=21% Similarity=0.379 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHhhCCCCCEEEEeCCCCceeEEEEEEcCCCCCCCCcEEEEEEECCCCCCCCCCceeecCCCceecCCceE
Q 026499 7 VKRLQKEYRALCKEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPNGRFMTQKKL 86 (237)
Q Consensus 7 ~kRL~kE~~~l~~~~~~gi~v~p~~~nl~~W~~~i~GP~gTpYegG~f~~~i~fP~~YP~~pP~v~F~tPn~~v~~~G~I 86 (237)
..+|.+|+.+|..+.. +++. .++++...++.+.. + +....++|.+|.+||+++|.+...-|.
T Consensus 101 ys~ll~EIe~IGW~kl--~~i~-~d~~ls~i~l~~~D---~---~R~H~l~l~l~~~yp~~~p~~~~~~P~--------- 162 (291)
T PF09765_consen 101 YSNLLKEIEAIGWDKL--VQIQ-FDDDLSTIKLKIFD---S---SRQHYLELKLPSNYPFEPPSCSLDLPI--------- 162 (291)
T ss_dssp C-CHHHHHHHHHCGCC--EEEE-E-CCCSEEEEEEET---T---CEEEEEEEETTTTTTTSEEEECS-TTS---------
T ss_pred HHHHHHHHHHhccccc--eEEe-cCCCccEEEEEEEc---C---CceEEEEEEECCCCCCCCceeeCCCCc---------
Confidence 3568888888876543 2332 24678887888872 2 256788999999999999975433232
Q ss_pred eeccCCCCCCCCCC-ccchhhhhhhhccccc
Q 026499 87 CLSMSDFHPESWNP-MWSVSSILTGLLSFMM 116 (237)
Q Consensus 87 Cl~iL~~~~~~WsP-~~~i~~vL~~I~~lL~ 116 (237)
.. ...|.+ ..++.+|+...+..|.
T Consensus 163 --~~----~~~w~~~~ssL~~v~~qF~~~le 187 (291)
T PF09765_consen 163 --PF----SLSWSPSQSSLKDVVQQFQEALE 187 (291)
T ss_dssp ---H----HHHHHCHT-SHHHHHHHHHHHHH
T ss_pred --ch----hhhhcccccCHHHHHHHHHHHHH
Confidence 11 146887 6688888777665553
No 37
>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=71.24 E-value=15 Score=31.72 Aligned_cols=64 Identities=16% Similarity=0.156 Sum_probs=37.0
Q ss_pred HHHHHHHHhhCCCCCE-EEEeCCCCceeEEEEEEcCCC--CCCCCcEEEEEEECCCCCCCCCCceeecCC
Q 026499 10 LQKEYRALCKEPVSHV-VARPSPNDILEWHYVLEGSNG--TPFAGGYYYGKIKFPPEYPYKPPGILMITP 76 (237)
Q Consensus 10 L~kE~~~l~~~~~~gi-~v~p~~~nl~~W~~~i~GP~g--TpYegG~f~~~i~fP~~YP~~pP~v~F~tP 76 (237)
..+|+..|...-+.-+ .+ .+.+...+.+.|.--.| --|.| .|.+.+.++.+||..+|-+.+..+
T Consensus 7 Qe~E~EaLeSIY~de~~~i--~~~~~~~f~v~iq~e~~e~d~~~~-~~~l~~s~tEnYPDe~Pli~~~~~ 73 (215)
T KOG4018|consen 7 QEEELEALESIYPDEFKHI--NSEDPPIFEVTIQYEEGENDEPKG-SFILVFSLTENYPDEAPLIEAFEN 73 (215)
T ss_pred HHHHHHHHHHhccchhhhh--hccCCccceeeeecccccCCCccc-cEEEEEEccCCCCCCCcceecccc
Confidence 4566666665333333 22 12233335566652221 12333 788999999999999999955444
No 38
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=43.28 E-value=15 Score=25.25 Aligned_cols=20 Identities=0% Similarity=0.172 Sum_probs=11.2
Q ss_pred chHHHHHHHHHHHHHHhhcc
Q 026499 215 PTWMLLLLVSIFGIVMALPL 234 (237)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~ 234 (237)
..=|.++++.+++++|.++.
T Consensus 39 ~~i~~~~~i~~l~v~~~~~~ 58 (59)
T PF09889_consen 39 QYIFFGIFILFLAVWIFMTF 58 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 33344445555777777664
No 39
>PF15378 DUF4605: Domain of unknown function (DUF4605)
Probab=41.06 E-value=27 Score=24.18 Aligned_cols=18 Identities=22% Similarity=0.342 Sum_probs=15.4
Q ss_pred hHHHHHHHHHHHHHHhhc
Q 026499 216 TWMLLLLVSIFGIVMALP 233 (237)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~ 233 (237)
.|++++|++++|..++.-
T Consensus 33 ~~~lL~flG~~glllv~~ 50 (60)
T PF15378_consen 33 FLVLLWFLGIRGLLLVGL 50 (60)
T ss_pred HHHHHHHHhHHHHHHHHH
Confidence 689999999999988753
No 40
>PF11587 Prion_bPrPp: Major prion protein bPrPp - N terminal; PDB: 1SKH_A.
Probab=39.42 E-value=33 Score=20.18 Aligned_cols=13 Identities=31% Similarity=0.879 Sum_probs=10.6
Q ss_pred chHHHHHHHHHHH
Q 026499 215 PTWMLLLLVSIFG 227 (237)
Q Consensus 215 ~~~~~~~~~~~~~ 227 (237)
--||++|||+.-.
T Consensus 7 gcWilvLfvatws 19 (29)
T PF11587_consen 7 GCWILVLFVATWS 19 (29)
T ss_dssp TTHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHh
Confidence 4699999998754
No 41
>PF14147 Spore_YhaL: Sporulation protein YhaL
Probab=39.07 E-value=32 Score=23.04 Aligned_cols=19 Identities=26% Similarity=0.637 Sum_probs=14.1
Q ss_pred CchHHHHHHHHHH-HHHHhh
Q 026499 214 FPTWMLLLLVSIF-GIVMAL 232 (237)
Q Consensus 214 ~~~~~~~~~~~~~-~~~~~~ 232 (237)
+|-|+-++.++|| .+.||+
T Consensus 1 ~PwWvY~vi~gI~~S~ym~v 20 (52)
T PF14147_consen 1 IPWWVYFVIAGIIFSGYMAV 20 (52)
T ss_pred CcchHHHHHHHHHHHHHHHH
Confidence 6899988888764 556765
No 42
>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3QRL_A 2L7E_A 3FK3_C 3RLS_A.
Probab=38.97 E-value=94 Score=22.68 Aligned_cols=46 Identities=15% Similarity=0.260 Sum_probs=30.0
Q ss_pred eeEEEEEEcCCCCCCCCcEEEEEEECCCCCCCCCCceeecCCCceecC
Q 026499 35 LEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPNGRFMT 82 (237)
Q Consensus 35 ~~W~~~i~GP~gTpYegG~f~~~i~fP~~YP~~pP~v~F~tPn~~v~~ 82 (237)
++|.+-+.|+.+..-..-+=++...+.+.|+. |...+..|-..+..
T Consensus 2 h~W~v~Vr~~~~~d~~~~i~kV~f~LHpsF~~--p~r~v~~pPFevte 47 (84)
T PF03366_consen 2 HKWTVYVRGLDNEDLSYFIKKVTFKLHPSFPN--PVRVVTKPPFEVTE 47 (84)
T ss_dssp EEEEEEEEECCCT--TTTEEEEEEES-TTSSS---EEECSSTTEEEEE
T ss_pred cEEEEEEEeCCCCCccceEEEEEEECCCCCCC--CceEecCCCCEEEE
Confidence 58999999988865445566788888888876 66666665433433
No 43
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=38.33 E-value=41 Score=31.06 Aligned_cols=27 Identities=30% Similarity=0.693 Sum_probs=25.5
Q ss_pred CCCCcEEEEEEECCCCCCCCCCceeec
Q 026499 48 PFAGGYYYGKIKFPPEYPYKPPGILMI 74 (237)
Q Consensus 48 pYegG~f~~~i~fP~~YP~~pP~v~F~ 74 (237)
||.|-..+-+|.|...||..||-+.|.
T Consensus 61 Py~~~~l~W~viFd~~~p~~pPDfiF~ 87 (333)
T PF06113_consen 61 PYCGEYLKWDVIFDAQYPEFPPDFIFG 87 (333)
T ss_pred eccCCEEEEEEEEcCCCCCCCCCEEeC
Confidence 688999999999999999999999996
No 44
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=31.61 E-value=51 Score=30.19 Aligned_cols=26 Identities=15% Similarity=0.313 Sum_probs=23.2
Q ss_pred cEEEEEEECCCCCCCCCCceeecCCC
Q 026499 52 GYYYGKIKFPPEYPYKPPGILMITPN 77 (237)
Q Consensus 52 G~f~~~i~fP~~YP~~pP~v~F~tPn 77 (237)
-.|.+.+..++.||.+.|+|+...|.
T Consensus 45 vcvtl~m~vs~gYP~esPtvtl~nPR 70 (368)
T KOG4445|consen 45 VCVTLEMTVSEGYPAESPTVTLSNPR 70 (368)
T ss_pred EEEEEEEecCCCCCCcCCceEecCCC
Confidence 46889999999999999999999863
No 45
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=29.44 E-value=60 Score=25.99 Aligned_cols=25 Identities=32% Similarity=0.499 Sum_probs=21.6
Q ss_pred CcEEEEEEECCCCCC-CCCCceeecC
Q 026499 51 GGYYYGKIKFPPEYP-YKPPGILMIT 75 (237)
Q Consensus 51 gG~f~~~i~fP~~YP-~~pP~v~F~t 75 (237)
.|.|.|.-.+|-.|| ..||.|.|.-
T Consensus 65 ~G~y~f~ti~Pg~Y~~~R~~HiH~~V 90 (146)
T cd00421 65 DGRYRFRTIKPGPYPIGRPPHIHFKV 90 (146)
T ss_pred CcCEEEEEEcCCCCCCCCCCEEEEEE
Confidence 489999999999999 8888887764
No 46
>smart00340 HALZ homeobox associated leucin zipper.
Probab=27.63 E-value=50 Score=21.21 Aligned_cols=14 Identities=43% Similarity=0.423 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHhhC
Q 026499 7 VKRLQKEYRALCKE 20 (237)
Q Consensus 7 ~kRL~kE~~~l~~~ 20 (237)
-+||++|+.+|...
T Consensus 21 NrRL~ke~~eLral 34 (44)
T smart00340 21 NRRLQKEVQELRAL 34 (44)
T ss_pred HHHHHHHHHHHHhc
Confidence 48999999999864
No 47
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=27.41 E-value=65 Score=24.54 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=19.5
Q ss_pred CCchHHHHHHHHHHHHHHhhccC
Q 026499 213 SFPTWMLLLLVSIFGIVMALPLL 235 (237)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~ 235 (237)
.-..|-.+.++|++|.-|++|.+
T Consensus 35 ~~~~~~~l~~~g~IG~~~v~pil 57 (100)
T TIGR02230 35 TRSIWEGLGMFGLIGWSVAIPTL 57 (100)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHH
Confidence 33479999999999999999965
No 48
>PF06624 RAMP4: Ribosome associated membrane protein RAMP4; InterPro: IPR010580 This entry contains Serp1/Ramp4, which has been shown to interacts with target proteins during their translocation into the lumen of the endoplasmic reticulum. It has also been shown to protect unfolded target proteins against degradation during ER stress. It may facilitate glycosylation of target proteins after termination of ER stress and may modulate the use of N-glycosylation sites on target proteins [, ].
Probab=26.80 E-value=22 Score=24.74 Aligned_cols=20 Identities=15% Similarity=0.187 Sum_probs=14.4
Q ss_pred ccCCCchHHHHHHHHHHHHH
Q 026499 210 RKQSFPTWMLLLLVSIFGIV 229 (237)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~ 229 (237)
+..-=|.|+++++|-|+|+.
T Consensus 34 k~pVgp~~L~l~iFVV~Gs~ 53 (63)
T PF06624_consen 34 KYPVGPWLLGLFIFVVCGSA 53 (63)
T ss_pred cCCcCHHHHhhhheeeEcHH
Confidence 34445778888888888875
No 49
>PF05781 MRVI1: MRVI1 protein; InterPro: IPR008677 This family consists of mammalian MRVI1 proteins which are related to the lymphoid-restricted membrane protein (JAW1) and the IP3 receptor associated cGMP kinase substrates A and B (IRAGA and IRAGB). The function of MRVI1 is unknown although mutations in the Mrvi1 gene induces myeloid leukaemia by altering the expression of a gene important for myeloid cell growth and/or differentiation so it has been speculated that Mrvi1 is a tumour suppressor gene []. IRAG is very similar in sequence to MRVI1 and is an essential NO/cGKI-dependent regulator of IP3-induced calcium release. Activation of cGKI decreases IP3-stimulated elevations in intracellular calcium, induces smooth muscle relaxation and contributes to the antiproliferative and pro-apoptotic effects of NO/cGMP []. Jaw1 is a member of a class of proteins with COOH-terminal hydrophobic membrane anchors and is structurally similar to proteins involved in vesicle targeting and fusion. This suggests that the function and/or the structure of the ER in lymphocytes may be modified by lymphoid-restricted resident ER proteins [].
Probab=26.78 E-value=49 Score=32.50 Aligned_cols=17 Identities=12% Similarity=0.632 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHHHhh
Q 026499 216 TWMLLLLVSIFGIVMAL 232 (237)
Q Consensus 216 ~~~~~~~~~~~~~~~~~ 232 (237)
.||+|.||-||++||++
T Consensus 480 LWIsvAliVLLAaLlSf 496 (538)
T PF05781_consen 480 LWISVALIVLLAALLSF 496 (538)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 39999999999999986
No 50
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=26.66 E-value=70 Score=26.98 Aligned_cols=26 Identities=27% Similarity=0.266 Sum_probs=21.8
Q ss_pred CCcEEEEEEECCCCCCCCCCceeecC
Q 026499 50 AGGYYYGKIKFPPEYPYKPPGILMIT 75 (237)
Q Consensus 50 egG~f~~~i~fP~~YP~~pP~v~F~t 75 (237)
+.|.|.|.=.+|--||..+|.|.|.-
T Consensus 85 ~~G~~~F~TI~PG~Y~gR~~HIH~~V 110 (188)
T cd03457 85 ADGVVTFTTIFPGWYPGRATHIHFKV 110 (188)
T ss_pred CCccEEEEEECCCCCCCCCceEEEEE
Confidence 34889999999999999888887663
No 51
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=26.18 E-value=69 Score=29.61 Aligned_cols=24 Identities=17% Similarity=0.430 Sum_probs=21.4
Q ss_pred cEEEEEEECCCCCCCCCCceeecC
Q 026499 52 GYYYGKIKFPPEYPYKPPGILMIT 75 (237)
Q Consensus 52 G~f~~~i~fP~~YP~~pP~v~F~t 75 (237)
=.|-++|.+|..||...|.++|.+
T Consensus 306 F~flvHi~Lp~~FP~~qP~ltlqS 329 (333)
T PF06113_consen 306 FTFLVHISLPIQFPKDQPSLTLQS 329 (333)
T ss_pred eEEEEEEeccCCCCCcCCeEEEEe
Confidence 458889999999999999999875
No 52
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=25.06 E-value=62 Score=32.07 Aligned_cols=29 Identities=31% Similarity=0.841 Sum_probs=24.5
Q ss_pred CCCCcEEEEEEECCCCCCC---CCCceeecCCC
Q 026499 48 PFAGGYYYGKIKFPPEYPY---KPPGILMITPN 77 (237)
Q Consensus 48 pYegG~f~~~i~fP~~YP~---~pP~v~F~tPn 77 (237)
||.=|.|.+ +.+|+.||+ +-|-+.|.||.
T Consensus 249 pY~WgryDl-lvlPpSFP~gGMENPcltF~TpT 280 (613)
T KOG1047|consen 249 PYVWGRYDL-LVLPPSFPFGGMENPCLTFVTPT 280 (613)
T ss_pred CcccccceE-EEecCCCCcccccCcceeeecch
Confidence 777788885 578999999 67999999984
No 53
>COG4890 Predicted outer membrane lipoprotein [Function unknown]
Probab=22.52 E-value=96 Score=19.05 Aligned_cols=16 Identities=50% Similarity=0.619 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHhhc
Q 026499 218 MLLLLVSIFGIVMALP 233 (237)
Q Consensus 218 ~~~~~~~~~~~~~~~~ 233 (237)
+.+|+-..||++-||=
T Consensus 8 LG~lLAcAFgiinAlw 23 (37)
T COG4890 8 LGLLLACAFGIINALW 23 (37)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4678888999998874
No 54
>COG5349 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.77 E-value=64 Score=25.56 Aligned_cols=24 Identities=29% Similarity=0.538 Sum_probs=21.5
Q ss_pred CCchHHHHHHHHHHHHHHhhccCC
Q 026499 213 SFPTWMLLLLVSIFGIVMALPLLQ 236 (237)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~ 236 (237)
.-|+|.-+++...+.++++|.+||
T Consensus 83 ~~p~W~hl~vw~P~~~~~sL~~lr 106 (126)
T COG5349 83 NPPLWVHLLVWLPLTLALSLLLLR 106 (126)
T ss_pred CCCchhhhHHHHHHHHHHHHHhhh
Confidence 568999999999999999999987
No 55
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=21.67 E-value=1.5e+02 Score=22.10 Aligned_cols=26 Identities=15% Similarity=0.047 Sum_probs=20.3
Q ss_pred CCCcEEEEEEECCCCCCCCCCceeecCC
Q 026499 49 FAGGYYYGKIKFPPEYPYKPPGILMITP 76 (237)
Q Consensus 49 YegG~f~~~i~fP~~YP~~pP~v~F~tP 76 (237)
-||..+.|...-|..|| .|.|.+.++
T Consensus 16 ~eG~~~~L~C~pP~g~P--~P~i~W~~~ 41 (95)
T cd05845 16 EEGDSVVLPCNPPKSAV--PLRIYWMNS 41 (95)
T ss_pred ecCCCEEEEecCCCCCC--CCEEEEECC
Confidence 35677888888889999 588888874
No 56
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=21.47 E-value=1e+02 Score=25.18 Aligned_cols=25 Identities=28% Similarity=0.521 Sum_probs=20.8
Q ss_pred CcEEEEEEECCCCCC-----CCCCceeecC
Q 026499 51 GGYYYGKIKFPPEYP-----YKPPGILMIT 75 (237)
Q Consensus 51 gG~f~~~i~fP~~YP-----~~pP~v~F~t 75 (237)
.|.|.|.-.+|--|| ..||.|.|.-
T Consensus 72 ~G~~~f~Ti~Pg~Y~~p~~~~R~~HIH~~V 101 (158)
T cd03459 72 DGRYRFRTIKPGAYPWRNGAWRAPHIHVSV 101 (158)
T ss_pred CCcEEEEEECCCCcCCCCCCCcCCEEEEEE
Confidence 488999999999999 7888777663
No 57
>COG3140 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.03 E-value=1.4e+02 Score=20.38 Aligned_cols=25 Identities=20% Similarity=0.179 Sum_probs=20.7
Q ss_pred CCcHHHHHHHHHHHHHHhhCCCCCE
Q 026499 1 MAEKACVKRLQKEYRALCKEPVSHV 25 (237)
Q Consensus 1 Mas~~~~kRL~kE~~~l~~~~~~gi 25 (237)
|+|..++.-+.+|+++.++..+.+.
T Consensus 28 mSsGEAIa~VA~elRe~hk~~~~~~ 52 (60)
T COG3140 28 MSSGEAIALVAQELRENHKGENRIV 52 (60)
T ss_pred ccchhHHHHHHHHHHHHhccccccc
Confidence 7888899999999999998765544
No 58
>PF06170 DUF983: Protein of unknown function (DUF983); InterPro: IPR009325 This family consists of several bacterial proteins of unknown function.
Probab=20.75 E-value=74 Score=23.43 Aligned_cols=24 Identities=25% Similarity=0.465 Sum_probs=16.1
Q ss_pred CCchHHHHHHHHHHHHHHhhccCC
Q 026499 213 SFPTWMLLLLVSIFGIVMALPLLQ 236 (237)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~ 236 (237)
.-|.|..+++...+.+++.|.||+
T Consensus 51 ~pp~wv~~~i~~pl~~~l~l~lLr 74 (86)
T PF06170_consen 51 RPPLWVHLAIWLPLTLALSLLLLR 74 (86)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 446777777777777777766654
Done!