BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026500
(237 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q43082|HEM3_PEA Porphobilinogen deaminase, chloroplastic OS=Pisum sativum GN=HEMC
PE=1 SV=1
Length = 369
Score = 347 bits (889), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 169/193 (87%), Positives = 182/193 (94%)
Query: 1 MALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMK 60
MA H ELA+EGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALIN IDIAVHSMK
Sbjct: 84 MASHTELAEEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINGDIDIAVHSMK 143
Query: 61 DVPTYLPEKTILPCNLQREDVRDAFISLSAASLAELPAGSIVGTASLRRKSQILHRYPSL 120
DVPTYLPE+TILPCNL REDVRDAFISLSAASLA+LPAGS++GTASLRRKSQILHRYPSL
Sbjct: 144 DVPTYLPEETILPCNLPREDVRDAFISLSAASLADLPAGSVIGTASLRRKSQILHRYPSL 203
Query: 121 KVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPAVAQGAIG 180
V +NFRGNVQTRLRKL+E VV+ATLLALAGLKRL+MTENVT+ LS+DDMLPAVAQGAIG
Sbjct: 204 TVQDNFRGNVQTRLRKLSEGVVKATLLALAGLKRLNMTENVTSTLSIDDMLPAVAQGAIG 263
Query: 181 IACRSNDEKMVPF 193
IACRSND+KM +
Sbjct: 264 IACRSNDDKMAEY 276
>sp|Q43316|HEM3_ARATH Porphobilinogen deaminase, chloroplastic OS=Arabidopsis thaliana
GN=HEMC PE=1 SV=1
Length = 382
Score = 327 bits (838), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 159/190 (83%), Positives = 173/190 (91%)
Query: 4 HPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVP 63
HPEL ++GAI I IIKTTGDKILSQPLADIGGKGLFTKEIDEALIN IDIAVHSMKDVP
Sbjct: 100 HPELVEDGAIHIEIIKTTGDKILSQPLADIGGKGLFTKEIDEALINGHIDIAVHSMKDVP 159
Query: 64 TYLPEKTILPCNLQREDVRDAFISLSAASLAELPAGSIVGTASLRRKSQILHRYPSLKVM 123
TYLPEKTILPCNL REDVRDAFI L+AA+LAELPAGS+VGTASLRRKSQILH+YP+L V
Sbjct: 160 TYLPEKTILPCNLPREDVRDAFICLTAATLAELPAGSVVGTASLRRKSQILHKYPALHVE 219
Query: 124 ENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPAVAQGAIGIAC 183
ENFRGNVQTRL KL VQATLLALAGLKRLSMTENV +ILS+D+MLPAVAQGAIGIAC
Sbjct: 220 ENFRGNVQTRLSKLQGGKVQATLLALAGLKRLSMTENVASILSLDEMLPAVAQGAIGIAC 279
Query: 184 RSNDEKMVPF 193
R++D+KM +
Sbjct: 280 RTDDDKMATY 289
>sp|Q6H6D2|HEM3_ORYSJ Porphobilinogen deaminase, chloroplastic OS=Oryza sativa subsp.
japonica GN=HEMC PE=2 SV=1
Length = 358
Score = 306 bits (783), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 150/192 (78%), Positives = 173/192 (90%), Gaps = 1/192 (0%)
Query: 2 ALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKD 61
A H ELA+EGA++IVIIKTTGD IL +PLADIGGKGLFTKEID+AL+ +IDIAVHSMKD
Sbjct: 73 AAHSELAEEGAVEIVIIKTTGDMILDKPLADIGGKGLFTKEIDDALLQGRIDIAVHSMKD 132
Query: 62 VPTYLPEKTILPCNLQREDVRDAFISLSAASLAELPAGSIVGTASLRRKSQILHRYPSLK 121
VPTYLPE TILPCNL REDVRDAFI L+A+SLAELPAGS+VG+ASLRR+SQIL++YPSLK
Sbjct: 133 VPTYLPEGTILPCNLPREDVRDAFICLTASSLAELPAGSVVGSASLRRQSQILYKYPSLK 192
Query: 122 VMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPAVAQGAIGI 181
V+ NFRGNVQTRLRKL E V ATLLALAGLKRL+M E T++LSVD+MLPAVAQGAIGI
Sbjct: 193 VV-NFRGNVQTRLRKLKEGDVHATLLALAGLKRLNMAETATSVLSVDEMLPAVAQGAIGI 251
Query: 182 ACRSNDEKMVPF 193
ACRS+D+ M+ +
Sbjct: 252 ACRSSDDTMMNY 263
>sp|Q1QQP5|HEM3_NITHX Porphobilinogen deaminase OS=Nitrobacter hamburgensis (strain X14 /
DSM 10229) GN=hemC PE=3 SV=1
Length = 316
Score = 209 bits (533), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 110/181 (60%), Positives = 130/181 (71%), Gaps = 1/181 (0%)
Query: 13 IQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTIL 72
I I I+T+GD I +PL D+GGKGLFTKEI+EAL+ ID AVHS KDVPT+LP+ T L
Sbjct: 43 IVIKTIRTSGDAIQDRPLFDVGGKGLFTKEIEEALLAGSIDFAVHSSKDVPTFLPDATWL 102
Query: 73 PCNLQREDVRDAFISLSAASLAELPAGSIVGTASLRRKSQILHRYPSLKVMENFRGNVQT 132
P L REDVRDAFIS AASL +LPAGSIVGTASLRR++ +L P LKV RGNV+T
Sbjct: 103 PAFLPREDVRDAFISPRAASLNDLPAGSIVGTASLRRQAMVLRLRPDLKV-SVIRGNVET 161
Query: 133 RLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPAVAQGAIGIACRSNDEKMVP 192
RLRKL ATLLALAGL RL + + T IL D+ LPAV QGAI I R +D+++
Sbjct: 162 RLRKLVAGEADATLLALAGLNRLGLQDRATRILETDEFLPAVGQGAIAIESRRDDDRINA 221
Query: 193 F 193
F
Sbjct: 222 F 222
>sp|Q3SVF3|HEM3_NITWN Porphobilinogen deaminase OS=Nitrobacter winogradskyi (strain
Nb-255 / ATCC 25391) GN=hemC PE=3 SV=1
Length = 316
Score = 204 bits (520), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 105/181 (58%), Positives = 129/181 (71%), Gaps = 1/181 (0%)
Query: 13 IQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTIL 72
I I I+T+GD I +PL D+GGKGLFTKEI+EAL+ ID AVHS KDVPT+LP+ T L
Sbjct: 43 IAIKTIRTSGDAIQDRPLFDVGGKGLFTKEIEEALLAGTIDFAVHSSKDVPTFLPDATWL 102
Query: 73 PCNLQREDVRDAFISLSAASLAELPAGSIVGTASLRRKSQILHRYPSLKVMENFRGNVQT 132
P L REDVRD FIS A SL +LPAG+ VGTASLRR++ +L P LKV + RGNV+T
Sbjct: 103 PAFLPREDVRDVFISPHAGSLNDLPAGATVGTASLRRQAMVLKLRPDLKV-NSLRGNVET 161
Query: 133 RLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPAVAQGAIGIACRSNDEKMVP 192
RLRK++ ATLLALAGL RL + + T IL D+ LPAV QGAI I R +D+++
Sbjct: 162 RLRKISVGEADATLLALAGLNRLGLQDKATRILETDEFLPAVGQGAIAIESRRDDDRINA 221
Query: 193 F 193
F
Sbjct: 222 F 222
>sp|Q3A009|HEM3_PELCD Porphobilinogen deaminase OS=Pelobacter carbinolicus (strain DSM
2380 / Gra Bd 1) GN=hemC PE=3 SV=1
Length = 315
Score = 201 bits (511), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 99/187 (52%), Positives = 131/187 (70%), Gaps = 5/187 (2%)
Query: 3 LHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDV 62
LHP L+ + +V I T GDKIL PLA +GGKGLF KEI+EAL + ID+AVHSMKDV
Sbjct: 30 LHPGLS----VVLVPITTKGDKILDVPLAKVGGKGLFVKEIEEALYDGSIDLAVHSMKDV 85
Query: 63 PTYLPEKTILPCNLQREDVRDAFISLSAASLAELPAGSIVGTASLRRKSQILHRYPSLKV 122
P+ LP ILPC RED RDA ++ S A+LP G+ +GT++LRR++Q+LHR P L +
Sbjct: 86 PSVLPPGLILPCIPPREDPRDALVTPDGRSFAQLPQGARIGTSALRRQAQLLHRRPDLDI 145
Query: 123 MENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPAVAQGAIGIA 182
+ + RGNV+TRLRK+ E + +LA AGLKRL + E + LSVD LPA+ QGA+G+
Sbjct: 146 V-SLRGNVETRLRKMEEEDMDGIVLAAAGLKRLELAERIAEYLSVDVSLPAIGQGALGLE 204
Query: 183 CRSNDEK 189
CR D++
Sbjct: 205 CREGDDR 211
>sp|A1B853|HEM3_PARDP Porphobilinogen deaminase OS=Paracoccus denitrificans (strain Pd
1222) GN=hemC PE=3 SV=1
Length = 313
Score = 195 bits (495), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 101/178 (56%), Positives = 137/178 (76%), Gaps = 1/178 (0%)
Query: 12 AIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTI 71
A +IV+IKTTGD++L +PL +IGGKGLFT+EI++AL+ +IDIAVHSMKD+PT PE +
Sbjct: 42 AFRIVVIKTTGDRVLDRPLKEIGGKGLFTREIEDALLAHEIDIAVHSMKDMPTIQPEGLV 101
Query: 72 LPCNLQREDVRDAFISLSAASLAELPAGSIVGTASLRRKSQILHRYPSLKVMENFRGNVQ 131
+ C L REDVRDAF+S A+++ELP G++VG++SLRR++Q+ R P LK++E FRGNVQ
Sbjct: 102 IDCYLPREDVRDAFVSAQFAAISELPQGAVVGSSSLRRRAQLAARRPDLKLVE-FRGNVQ 160
Query: 132 TRLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPAVAQGAIGIACRSNDEK 189
TRL+KL + V AT LA+AGL RL M + D+MLPAVAQG IG+ R++D +
Sbjct: 161 TRLKKLEDGVAVATFLAMAGLTRLGMLHVARGAVEPDEMLPAVAQGCIGVERRADDAR 218
>sp|Q747I1|HEM3_GEOSL Porphobilinogen deaminase OS=Geobacter sulfurreducens (strain ATCC
51573 / DSM 12127 / PCA) GN=hemC PE=3 SV=1
Length = 318
Score = 191 bits (484), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 100/187 (53%), Positives = 131/187 (70%), Gaps = 5/187 (2%)
Query: 13 IQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTIL 72
+++V IKT GDKIL PLA +GGKGLF KEI+EA++ +IDIAVHSMKDVPT PE L
Sbjct: 36 VELVKIKTIGDKILDVPLAQVGGKGLFVKEIEEAMLRGEIDIAVHSMKDVPTEFPEGLGL 95
Query: 73 PCNLQREDVRDAFISLSAASLAELPAGSIVGTASLRRKSQILHRYPSLKVMENFRGNVQT 132
C +RED RDAFIS + + A LP G+ +GT++LRR++Q+L P L+ M RGNV+T
Sbjct: 96 VCITEREDPRDAFIS-NGVTFANLPQGAKIGTSALRRQAQLLKVRPDLE-MVIIRGNVET 153
Query: 133 RLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPAVAQGAIGIACRSNDE---K 189
R+RKL E + A +LA AGLKRL T+ VT L VD LPA+ QGA+G+ CR +D+ +
Sbjct: 154 RIRKLTEDKLDAVILAAAGLKRLGFTDVVTEYLPVDLSLPAIGQGALGLECRLDDQAVRE 213
Query: 190 MVPFTTH 196
+ F H
Sbjct: 214 TIDFFNH 220
>sp|A1AUE7|HEM3_PELPD Porphobilinogen deaminase OS=Pelobacter propionicus (strain DSM
2379) GN=hemC PE=3 SV=1
Length = 310
Score = 189 bits (479), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 98/191 (51%), Positives = 130/191 (68%), Gaps = 5/191 (2%)
Query: 13 IQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTIL 72
+ + IKT GD+IL PLA +GGKGLF KEI+EA++ +IDIAVHSMKDVPT PE L
Sbjct: 36 VTLTKIKTMGDRILDVPLAQVGGKGLFVKEIEEAMLRGEIDIAVHSMKDVPTEFPEGLGL 95
Query: 73 PCNLQREDVRDAFISLSAASLAELPAGSIVGTASLRRKSQILHRYPSLKVMENFRGNVQT 132
C +RED RDA +S AA + LP G+ VGT++LRR++Q+LH P L+ M RGNV+T
Sbjct: 96 YCITEREDPRDAVVS-RAARFSHLPPGARVGTSALRRQAQLLHARPDLE-MVTIRGNVET 153
Query: 133 RLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPAVAQGAIGIACRSNDE---K 189
R+RKL+E + A +LA AGLKRL +T+ V L V+ +PA+ QGA+GI CR +D +
Sbjct: 154 RIRKLDEENLDAVILAAAGLKRLGLTQRVAEYLDVEFSIPAIGQGALGIECRLSDPVVTE 213
Query: 190 MVPFTTHSQAS 200
+ F H S
Sbjct: 214 AIAFFNHPDTS 224
>sp|A1WVT9|HEM3_HALHL Porphobilinogen deaminase OS=Halorhodospira halophila (strain DSM
244 / SL1) GN=hemC PE=3 SV=1
Length = 310
Score = 187 bits (475), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 96/192 (50%), Positives = 128/192 (66%), Gaps = 5/192 (2%)
Query: 3 LHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDV 62
LHP L +++V + T GD+IL QPLA IGGKGLF KE+++ ++ + D+AVHSMKD+
Sbjct: 30 LHPGLE----VELVPMSTRGDEILDQPLARIGGKGLFMKELEDGMLRGEADLAVHSMKDI 85
Query: 63 PTYLPEKTILPCNLQREDVRDAFISLSAASLAELPAGSIVGTASLRRKSQILHRYPSLKV 122
P LPE L R D RDAF+S + L ELP G+ VGTASLRR+ QI+ R P L++
Sbjct: 86 PWRLPEGFDLAAVSDRADPRDAFVSNHYSDLDELPHGARVGTASLRRQCQIMDRRPDLQI 145
Query: 123 MENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPAVAQGAIGIA 182
E RGNVQTRLRKL++ V A +LA +GL RL +T + L+ + LPAV QGA+GI
Sbjct: 146 -EVLRGNVQTRLRKLDDGVYDAIILAASGLDRLELTHRIAGRLTPEQSLPAVGQGALGIE 204
Query: 183 CRSNDEKMVPFT 194
CR DE+++
Sbjct: 205 CREGDERVMKLV 216
>sp|Q1I316|HEM3_PSEE4 Porphobilinogen deaminase OS=Pseudomonas entomophila (strain L48)
GN=hemC PE=3 SV=1
Length = 313
Score = 186 bits (472), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 98/187 (52%), Positives = 128/187 (68%), Gaps = 5/187 (2%)
Query: 4 HPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVP 63
HP L + +V + + GDK+L PLA IGGKGLF KE++ AL++++ DIAVHSMKDVP
Sbjct: 31 HPGLQ----VSLVPMVSRGDKLLDAPLAKIGGKGLFVKELETALLDNEADIAVHSMKDVP 86
Query: 64 TYLPEKTILPCNLQREDVRDAFISLSAASLAELPAGSIVGTASLRRKSQILHRYPSLKVM 123
PE L C +RED RDAF+S + SL LPAGS+VGT+SLRR++Q+L R P L++
Sbjct: 87 MDFPEGLGLYCICEREDPRDAFVSNTFKSLEALPAGSVVGTSSLRRQAQLLARRPDLEI- 145
Query: 124 ENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPAVAQGAIGIAC 183
RGNV TRL KL+ A +LA AGL RL + +T+ +SVDD LPA QGA+GI C
Sbjct: 146 RFLRGNVNTRLAKLDAGEYDAIILAAAGLVRLGFEDRITSTISVDDSLPAGGQGAVGIEC 205
Query: 184 RSNDEKM 190
RS D ++
Sbjct: 206 RSADSEI 212
>sp|Q39QM7|HEM3_GEOMG Porphobilinogen deaminase OS=Geobacter metallireducens (strain
GS-15 / ATCC 53774 / DSM 7210) GN=hemC PE=3 SV=1
Length = 318
Score = 186 bits (472), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 102/207 (49%), Positives = 134/207 (64%), Gaps = 11/207 (5%)
Query: 12 AIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTI 71
A+++V IKT GDKIL PLA +GGKGLF KEI+EA++ +IDIAVHSMKDVPT PE
Sbjct: 35 AVELVKIKTMGDKILDVPLAQVGGKGLFVKEIEEAMLRGEIDIAVHSMKDVPTEFPEGLG 94
Query: 72 LPCNLQREDVRDAFISLSAASLAELPAGSIVGTASLRRKSQILHRYPSLKVMENFRGNVQ 131
L C +RED RDA IS A+LP G+ +GT++LRR++QIL P L+ M RGNV+
Sbjct: 95 LYCITEREDPRDAVIS-RGVKFADLPQGARIGTSALRRQAQILKVRPDLQ-MVVIRGNVE 152
Query: 132 TRLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPAVAQGAIGIACRSNDEKMV 191
TR+RKL + + A +LA AGL RL + V+ L V+ LPA+ QGA+GI CR +DE +
Sbjct: 153 TRIRKLTDENLDAVILAAAGLNRLGFADQVSEYLPVELSLPAIGQGALGIECRLDDETIK 212
Query: 192 --------PFTTHS-QASILNTFNCSG 209
P T H+ +A + C G
Sbjct: 213 DTIAFFNHPDTAHAVRAERALLWRCEG 239
>sp|B5ERN6|HEM3_ACIF5 Porphobilinogen deaminase OS=Acidithiobacillus ferrooxidans (strain
ATCC 53993) GN=hemC PE=3 SV=1
Length = 306
Score = 186 bits (471), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 94/189 (49%), Positives = 132/189 (69%), Gaps = 5/189 (2%)
Query: 1 MALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMK 60
+ LHP +A ++I+ + T+GD +L PL +GGKGLF KEI++AL ++D+AVHSMK
Sbjct: 27 LRLHPGMA----VEIITMTTSGDVLLDAPLHALGGKGLFVKEIEDALQQRRVDVAVHSMK 82
Query: 61 DVPTYLPEKTILPCNLQREDVRDAFISLSAASLAELPAGSIVGTASLRRKSQILHRYPSL 120
DVP P+ + + REDVRDAF+S + LP G+ VG++SLRR++Q+L RYP L
Sbjct: 83 DVPALQPDGLEIVAIMAREDVRDAFVSNTFLHPDALPEGARVGSSSLRRRAQLLERYPHL 142
Query: 121 KVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPAVAQGAIG 180
+V E+ RGNV TRLR+L+E A +LA AGLKRL + + +T++L +D LPAV QGAIG
Sbjct: 143 RV-EDLRGNVATRLRRLDEGHYDAIILAAAGLKRLGLPDRITHLLDIDRSLPAVGQGAIG 201
Query: 181 IACRSNDEK 189
I RS+D +
Sbjct: 202 IEARSDDRR 210
>sp|B7JBH8|HEM3_ACIF2 Porphobilinogen deaminase OS=Acidithiobacillus ferrooxidans (strain
ATCC 23270 / DSM 14882 / NCIB 8455) GN=hemC PE=3 SV=1
Length = 306
Score = 186 bits (471), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 94/189 (49%), Positives = 132/189 (69%), Gaps = 5/189 (2%)
Query: 1 MALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMK 60
+ LHP +A ++I+ + T+GD +L PL +GGKGLF KEI++AL ++D+AVHSMK
Sbjct: 27 LRLHPGMA----VEIITMTTSGDVLLDAPLHALGGKGLFVKEIEDALQQRRVDVAVHSMK 82
Query: 61 DVPTYLPEKTILPCNLQREDVRDAFISLSAASLAELPAGSIVGTASLRRKSQILHRYPSL 120
DVP P+ + + REDVRDAF+S + LP G+ VG++SLRR++Q+L RYP L
Sbjct: 83 DVPALQPDGLEIVAIMAREDVRDAFVSNTFLHPDALPEGARVGSSSLRRRAQLLERYPHL 142
Query: 121 KVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPAVAQGAIG 180
+V E+ RGNV TRLR+L+E A +LA AGLKRL + + +T++L +D LPAV QGAIG
Sbjct: 143 RV-EDLRGNVATRLRRLDEGHYDAIILAAAGLKRLGLPDRITHLLDIDRSLPAVGQGAIG 201
Query: 181 IACRSNDEK 189
I RS+D +
Sbjct: 202 IEARSDDRR 210
>sp|B3QWI1|HEM3_CHLT3 Porphobilinogen deaminase OS=Chloroherpeton thalassium (strain ATCC
35110 / GB-78) GN=hemC PE=3 SV=1
Length = 314
Score = 186 bits (471), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 97/207 (46%), Positives = 134/207 (64%), Gaps = 8/207 (3%)
Query: 18 IKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQ 77
IKTTGDKIL PLA IG KGLFT+EI+ ++ ++ID+AVHS+KD+PT PE ++ +
Sbjct: 40 IKTTGDKILDAPLAKIGDKGLFTREIEHVMLRNEIDLAVHSLKDLPTETPEGLVITAITE 99
Query: 78 REDVRDAFISLSAASLAELPAGSIVGTASLRRKSQILHRYPSLKVMENFRGNVQTRLRKL 137
RED RD IS +L LP G+IV T+SLRR+SQ+LH P L+V+ + RGN+ TR ++
Sbjct: 100 REDNRDVLISKGKYTLKTLPQGAIVATSSLRRRSQLLHLRPDLEVI-DMRGNLNTRFKRF 158
Query: 138 NERVVQATLLALAGLKRLSMTENVTNILSVDDMLPAVAQGAIGIACRSNDEKMVPFTTHS 197
E +A LLA AG+ RL +E++ I+S DD+LPAV QGA+GI R +DE+ T
Sbjct: 159 EEGDAEAMLLAFAGVHRLEFSEHIAEIISFDDILPAVGQGALGIETRIDDEE-----TRE 213
Query: 198 QASILNTFNCSGKLCYKLHFGFLNLVE 224
+LN + +LC K L +E
Sbjct: 214 LLKVLN--HAETELCTKCERSLLRTLE 238
>sp|B1J1V2|HEM3_PSEPW Porphobilinogen deaminase OS=Pseudomonas putida (strain W619)
GN=hemC PE=3 SV=1
Length = 313
Score = 185 bits (470), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 100/187 (53%), Positives = 127/187 (67%), Gaps = 5/187 (2%)
Query: 4 HPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVP 63
HP L + +V + + GDK+L PLA IGGKGLF KE++ AL++++ DIAVHSMKDVP
Sbjct: 31 HPGLL----VTLVPMVSRGDKLLDAPLAKIGGKGLFVKELETALLDNEADIAVHSMKDVP 86
Query: 64 TYLPEKTILPCNLQREDVRDAFISLSAASLAELPAGSIVGTASLRRKSQILHRYPSLKVM 123
PE L C +RED RDAF+S +SL LPAGSIVGT+SLRR++Q+L R P L++
Sbjct: 87 MDFPEGLGLYCICEREDPRDAFVSNRFSSLDALPAGSIVGTSSLRRQAQLLARRPDLQI- 145
Query: 124 ENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPAVAQGAIGIAC 183
RGNV TRL KL+ A +LA AGL RL E +T +SVDD LPA QGA+GI C
Sbjct: 146 RFLRGNVNTRLAKLDAGEYDAIILAAAGLIRLGFEERITASISVDDSLPAGGQGAVGIEC 205
Query: 184 RSNDEKM 190
RS D ++
Sbjct: 206 RSADSEI 212
>sp|Q3K4T0|HEM3_PSEPF Porphobilinogen deaminase OS=Pseudomonas fluorescens (strain Pf0-1)
GN=hemC PE=3 SV=1
Length = 313
Score = 185 bits (469), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 99/189 (52%), Positives = 129/189 (68%), Gaps = 5/189 (2%)
Query: 2 ALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKD 61
A HP L + +V + + GDK+L PL+ IGGKGLF KE++ AL+ ++ DIAVHSMKD
Sbjct: 29 AAHPGLL----VTLVPMVSRGDKLLDSPLSKIGGKGLFVKELETALLENEADIAVHSMKD 84
Query: 62 VPTYLPEKTILPCNLQREDVRDAFISLSAASLAELPAGSIVGTASLRRKSQILHRYPSLK 121
VP PE L C +RED RDAF+S + +SL LPAGSIVGT+SLRR++Q+L R P L+
Sbjct: 85 VPMDFPEGLGLFCICEREDPRDAFVSNTYSSLDALPAGSIVGTSSLRRQAQLLTRRPDLE 144
Query: 122 VMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPAVAQGAIGI 181
+ RGNV TRL KL+ A +LA AGL RL + +T+ +SVDD LPA QGA+GI
Sbjct: 145 I-RFLRGNVNTRLAKLDAGEYDAIILAAAGLIRLGFEDRITSAISVDDSLPAGGQGAVGI 203
Query: 182 ACRSNDEKM 190
CRS D ++
Sbjct: 204 ECRSADTEI 212
>sp|B0KH05|HEM3_PSEPG Porphobilinogen deaminase OS=Pseudomonas putida (strain GB-1)
GN=hemC PE=3 SV=1
Length = 313
Score = 185 bits (469), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 99/184 (53%), Positives = 126/184 (68%), Gaps = 5/184 (2%)
Query: 4 HPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVP 63
HP L + +V + + GDK+L PLA IGGKGLF KE++ AL++++ DIAVHSMKDVP
Sbjct: 31 HPGLL----VTLVPMVSRGDKLLDAPLAKIGGKGLFVKELETALLDNEADIAVHSMKDVP 86
Query: 64 TYLPEKTILPCNLQREDVRDAFISLSAASLAELPAGSIVGTASLRRKSQILHRYPSLKVM 123
PE L C +RED RDAF+S + SL LPAGSIVGT+SLRR++Q+L R P L++
Sbjct: 87 MDFPEGLGLYCICEREDPRDAFVSNTFDSLEALPAGSIVGTSSLRRQAQLLARRPDLQI- 145
Query: 124 ENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPAVAQGAIGIAC 183
RGNV TRL KL+ A +LA AGL RL + +T+ +SVDD LPA QGA+GI C
Sbjct: 146 RFLRGNVNTRLAKLDAGEYDAIILAAAGLIRLGFEDRITSTISVDDSLPAGGQGAVGIEC 205
Query: 184 RSND 187
RS D
Sbjct: 206 RSAD 209
>sp|Q82WS2|HEM3_NITEU Porphobilinogen deaminase OS=Nitrosomonas europaea (strain ATCC
19718 / NBRC 14298) GN=hemC PE=3 SV=1
Length = 308
Score = 185 bits (469), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 100/188 (53%), Positives = 128/188 (68%), Gaps = 1/188 (0%)
Query: 6 ELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTY 65
EL + I I+ + T GD+IL L+ IGGKGLF KE++ AL + + DIAVHSMKDVP
Sbjct: 30 ELYPQTDITILGMTTKGDQILDVSLSKIGGKGLFIKELELALEDGRADIAVHSMKDVPMI 89
Query: 66 LPEKTILPCNLQREDVRDAFISLSAASLAELPAGSIVGTASLRRKSQILHRYPSLKVMEN 125
+P L +RED RDAF+S +SL ELPAGS+VGT+SLRR+SQ+ R+P L+V
Sbjct: 90 VPSGFTLAAITEREDPRDAFVSNDFSSLEELPAGSVVGTSSLRRESQLRARFPHLQV-RP 148
Query: 126 FRGNVQTRLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPAVAQGAIGIACRS 185
RGNVQTRLRKL+E A +LA AGLKRL + ++ +L + LPAV QGA+GI CR
Sbjct: 149 LRGNVQTRLRKLDEGEYSAIILAAAGLKRLELGYRISMLLPPELSLPAVGQGALGIECRD 208
Query: 186 NDEKMVPF 193
ND MV +
Sbjct: 209 NDPDMVEW 216
>sp|Q88RE5|HEM3_PSEPK Porphobilinogen deaminase OS=Pseudomonas putida (strain KT2440)
GN=hemC PE=3 SV=1
Length = 313
Score = 184 bits (468), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 96/175 (54%), Positives = 123/175 (70%), Gaps = 1/175 (0%)
Query: 13 IQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTIL 72
+ +V + + GDK+L PLA IGGKGLF KE++ AL++++ DIAVHSMKDVP PE L
Sbjct: 36 VTLVPMVSRGDKLLDAPLAKIGGKGLFVKELETALLDNEADIAVHSMKDVPMDFPEGLGL 95
Query: 73 PCNLQREDVRDAFISLSAASLAELPAGSIVGTASLRRKSQILHRYPSLKVMENFRGNVQT 132
C +RED RDAF+S + SL LPAGSIVGT+SLRR++Q+L R P L++ RGNV T
Sbjct: 96 YCICEREDPRDAFVSNTFDSLEALPAGSIVGTSSLRRQAQLLARRPDLQI-RFLRGNVNT 154
Query: 133 RLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPAVAQGAIGIACRSND 187
RL KL+ A +LA AGL RL + +T+ +SVDD LPA QGA+GI CRS D
Sbjct: 155 RLAKLDAGEYDAIILAAAGLIRLGFEDRITSTISVDDSLPAGGQGAVGIECRSAD 209
>sp|A5VWX3|HEM3_PSEP1 Porphobilinogen deaminase OS=Pseudomonas putida (strain F1 / ATCC
700007) GN=hemC PE=3 SV=1
Length = 313
Score = 184 bits (467), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 96/175 (54%), Positives = 123/175 (70%), Gaps = 1/175 (0%)
Query: 13 IQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTIL 72
+ +V + + GDK+L PLA IGGKGLF KE++ AL++++ DIAVHSMKDVP PE L
Sbjct: 36 VTLVPMVSRGDKLLDAPLAKIGGKGLFVKELETALLDNEADIAVHSMKDVPMDFPEGLGL 95
Query: 73 PCNLQREDVRDAFISLSAASLAELPAGSIVGTASLRRKSQILHRYPSLKVMENFRGNVQT 132
C +RED RDAF+S + SL LPAGSIVGT+SLRR++Q+L R P L++ RGNV T
Sbjct: 96 YCICEREDPRDAFVSNTFDSLETLPAGSIVGTSSLRRQAQLLARRPDLQI-RFLRGNVNT 154
Query: 133 RLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPAVAQGAIGIACRSND 187
RL KL+ A +LA AGL RL + +T+ +SVDD LPA QGA+GI CRS D
Sbjct: 155 RLAKLDAGEYDAIILAAAGLIRLGFEDRITSTISVDDSLPAGGQGAVGIECRSAD 209
>sp|A7I1S0|HEM3_CAMHC Porphobilinogen deaminase OS=Campylobacter hominis (strain ATCC
BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=hemC PE=3
SV=1
Length = 308
Score = 184 bits (467), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 96/199 (48%), Positives = 133/199 (66%), Gaps = 5/199 (2%)
Query: 10 EGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEK 69
E +++ +KT GD IL PLA IGGKGLFTKE++E+++ + D+AVHS+KDVP P+
Sbjct: 30 EVEVELQSMKTKGDVILDTPLAKIGGKGLFTKELEESMLRGESDLAVHSLKDVPVVFPKG 89
Query: 70 TILPCNLQREDVRDAFISLSAASLAELPAGSIVGTASLRRKSQILHRYPSLKVMENFRGN 129
IL +REDVRD+F+S AS ELP G+ VGT SLRRK Q+L + P LK++ + RGN
Sbjct: 90 LILTAISEREDVRDSFVSEKFASFNELPKGAKVGTTSLRRKMQLLIKRPDLKII-SLRGN 148
Query: 130 VQTRLRKLNERVVQATLLALAGLKRLSMTENVTNI--LSVDDMLPAVAQGAIGIACRSND 187
+ TRLRKL E A +LA AGLKRL++ EN+ S+D+M+PA+ QGA+GI C
Sbjct: 149 INTRLRKLKENEFDAIILASAGLKRLNLMENIKYFVPFSLDEMIPAMGQGALGIECVDKS 208
Query: 188 E--KMVPFTTHSQASILNT 204
E +++ F + + I T
Sbjct: 209 EVIEILKFINNENSVIATT 227
>sp|B1HVD6|HEM3_LYSSC Porphobilinogen deaminase OS=Lysinibacillus sphaericus (strain
C3-41) GN=hemC PE=3 SV=1
Length = 310
Score = 184 bits (466), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 98/190 (51%), Positives = 128/190 (67%), Gaps = 5/190 (2%)
Query: 6 ELAQEGA---IQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDV 62
EL GA ++ I T GD+IL L+ +GGKGLF KEI++AL +ID AVHSMKD+
Sbjct: 24 ELKAAGAPFEFEVKEIVTKGDQILDVQLSKVGGKGLFVKEIEQALYEKEIDFAVHSMKDM 83
Query: 63 PTYLPEKTILPCNLQREDVRDAFISLSAASLAELPAGSIVGTASLRRKSQILHRYPSLKV 122
P LPE ++ C RED RDAFIS +ELPAG++VGT+SLRR +Q+L P L++
Sbjct: 84 PAVLPEGLVIGCIPPREDARDAFISKGHVKFSELPAGAVVGTSSLRRSAQLLTVRPDLEI 143
Query: 123 MENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTEN-VTNILSVDDMLPAVAQGAIGI 181
+ RGNV TRL KL A +LA AGLKRL +E+ VT LSV+D LPAVAQG++GI
Sbjct: 144 -KWIRGNVDTRLAKLETEEYDAIILAAAGLKRLGWSEDVVTEFLSVEDCLPAVAQGSLGI 202
Query: 182 ACRSNDEKMV 191
CR +D +++
Sbjct: 203 ECREDDTELL 212
>sp|Q500N6|HEM3_PSEU2 Porphobilinogen deaminase OS=Pseudomonas syringae pv. syringae
(strain B728a) GN=hemC PE=3 SV=1
Length = 313
Score = 183 bits (465), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 98/187 (52%), Positives = 128/187 (68%), Gaps = 5/187 (2%)
Query: 4 HPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVP 63
HP L + +V + + GDK+L PL+ IGGKGLF KE++ AL+ + DIAVHSMKDVP
Sbjct: 31 HPGLL----VTLVPMVSRGDKLLDSPLSKIGGKGLFVKELETALLENNADIAVHSMKDVP 86
Query: 64 TYLPEKTILPCNLQREDVRDAFISLSAASLAELPAGSIVGTASLRRKSQILHRYPSLKVM 123
P+ L C +RED RDAF+S + ASL +LPAGSIVGT+SLRR++Q+L R P L++
Sbjct: 87 MDFPQGLGLFCICEREDPRDAFVSNTFASLDQLPAGSIVGTSSLRRQAQLLARRPDLQI- 145
Query: 124 ENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPAVAQGAIGIAC 183
RGNV TRL KL+ A +LA AGL RL + +T+ +SVDD LPA QGA+GI C
Sbjct: 146 RFLRGNVNTRLAKLDAGEYDAIILAAAGLIRLGFEDRITSAISVDDSLPAGGQGAVGIEC 205
Query: 184 RSNDEKM 190
RS D ++
Sbjct: 206 RSVDAEI 212
>sp|Q0VM28|HEM3_ALCBS Porphobilinogen deaminase OS=Alcanivorax borkumensis (strain SK2 /
ATCC 700651 / DSM 11573) GN=hemC PE=3 SV=1
Length = 310
Score = 183 bits (465), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 97/194 (50%), Positives = 130/194 (67%), Gaps = 3/194 (1%)
Query: 13 IQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTIL 72
+++V IKT GDKIL PLA IGGKGLF KE++EA+++ + DIAVHSMKDVP LP L
Sbjct: 36 VELVRIKTQGDKILDTPLAKIGGKGLFVKELEEAMMDGRADIAVHSMKDVPMELPPGFAL 95
Query: 73 PCNLQREDVRDAFISLSAASLAELPAGSIVGTASLRRKSQILHRYPSLKVMENFRGNVQT 132
P +RED RDAF+S + L+ LP G+ VGT+SLRR++Q+ P L V+ + RGNVQT
Sbjct: 96 PVICEREDPRDAFVSNTFDGLSSLPHGACVGTSSLRRQAQVKANRPDL-VVNSLRGNVQT 154
Query: 133 RLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPAVAQGAIGIACRSNDEKMVP 192
RL KL+ A +LA AGLKRL M + + + ++ LPAV QGA+GI CR DE +
Sbjct: 155 RLGKLDAGNFDAIILAAAGLKRLEMHDRIRYEMPPEESLPAVGQGAVGIECREGDESTIE 214
Query: 193 FTTHSQASILNTFN 206
S S ++T++
Sbjct: 215 LL--SPLSDVDTWD 226
>sp|C1D679|HEM3_LARHH Porphobilinogen deaminase OS=Laribacter hongkongensis (strain
HLHK9) GN=hemC PE=3 SV=1
Length = 308
Score = 182 bits (463), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 99/185 (53%), Positives = 128/185 (69%), Gaps = 5/185 (2%)
Query: 2 ALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKD 61
AL+P L + I+ I T GD+IL + L IGGKGLF KE++ A+ Q D+AVHS+KD
Sbjct: 27 ALYPGLE----VSILGITTQGDRILDKTLNKIGGKGLFVKELELAMQEGQADLAVHSIKD 82
Query: 62 VPTYLPEKTILPCNLQREDVRDAFISLSAASLAELPAGSIVGTASLRRKSQILHRYPSLK 121
VP LPE L +RED RDAF+S ASL+ELPAG++VGTASLRR+SQI RYP L
Sbjct: 83 VPMDLPEGFALAAICEREDPRDAFVSSRYASLSELPAGAVVGTASLRRESQIRARYPHL- 141
Query: 122 VMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPAVAQGAIGI 181
+++ RGN+QTRLRKL+E A +LA +GLKR+ + E + LS D LPAV QGA+GI
Sbjct: 142 LVKPLRGNLQTRLRKLDEGQYDAIILAASGLKRMGLAERIRMELSTADSLPAVGQGALGI 201
Query: 182 ACRSN 186
R++
Sbjct: 202 EIRAD 206
>sp|Q5QUS3|HEM3_IDILO Porphobilinogen deaminase OS=Idiomarina loihiensis (strain ATCC
BAA-735 / DSM 15497 / L2-TR) GN=hemC PE=3 SV=1
Length = 313
Score = 181 bits (460), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 93/188 (49%), Positives = 130/188 (69%), Gaps = 5/188 (2%)
Query: 3 LHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDV 62
LHP L+ +++V + T GD IL PLA IGGKGLF KE++ A++ + DIAVHSMKD+
Sbjct: 29 LHPGLS----VELVPMSTKGDVILDTPLAKIGGKGLFVKELEVAMLEGRADIAVHSMKDL 84
Query: 63 PTYLPEKTILPCNLQREDVRDAFISLSAASLAELPAGSIVGTASLRRKSQILHRYPSLKV 122
P P L +RED RDAF+S + +L ELP G++VGT SLRR+ Q+ ++P L V
Sbjct: 85 PVEFPPGLELHTICEREDPRDAFVSNNYKNLNELPEGAVVGTCSLRRRCQVKEQFPHL-V 143
Query: 123 MENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPAVAQGAIGIA 182
+++ RGNVQTRLRKL+E A +LA +GL RL + + +T+ + V+ LPA QGA+GI
Sbjct: 144 IKDLRGNVQTRLRKLDEGEFDAIILAASGLIRLELGDRITSFIPVEQSLPANGQGALGIE 203
Query: 183 CRSNDEKM 190
CRS+D++M
Sbjct: 204 CRSDDDEM 211
>sp|Q98EI7|HEM3_RHILO Porphobilinogen deaminase OS=Rhizobium loti (strain MAFF303099)
GN=hemC PE=3 SV=1
Length = 308
Score = 180 bits (457), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 100/194 (51%), Positives = 132/194 (68%), Gaps = 6/194 (3%)
Query: 1 MALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMK 60
MA H A+ A ++V+I T+GD+I +PL++ GGKGLFTKEI+EAL+ IDIAVHS K
Sbjct: 27 MAAHGLPAE--AFEVVVISTSGDRIQDRPLSEAGGKGLFTKEIEEALLAGAIDIAVHSSK 84
Query: 61 DVPTYLPEKTILPCNLQREDVRDAFISLSAASLAELPAGSIVGTASLRRKSQILHRYPSL 120
D+PT LP+ L L RED RDAF+ +A ++A+L G+ VG++SLRR++ I P L
Sbjct: 85 DMPTQLPDGLELSAFLPREDARDAFVGKAAKTIADLLRGAKVGSSSLRRQALIRRMRPDL 144
Query: 121 KVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPAVAQGAIG 180
V+ FRGNVQTRLRKL+E V T+LA AGLKRL + T+++ +D PA QGAIG
Sbjct: 145 DVV-MFRGNVQTRLRKLDEGVAAGTILAYAGLKRLGLEHVATDLMPLDIFPPAPGQGAIG 203
Query: 181 IACRSND---EKMV 191
I R D EKM+
Sbjct: 204 IETRIGDRAVEKML 217
>sp|B9M416|HEM3_GEOSF Porphobilinogen deaminase OS=Geobacter sp. (strain FRC-32) GN=hemC
PE=3 SV=1
Length = 318
Score = 180 bits (456), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 95/187 (50%), Positives = 124/187 (66%), Gaps = 5/187 (2%)
Query: 13 IQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTIL 72
+ +V IKT GDKIL PLA +GGKGLF KEI+EA++ IDIAVHSMKDVPT PE L
Sbjct: 36 VSLVKIKTIGDKILDVPLAQVGGKGLFVKEIEEAMLRGDIDIAVHSMKDVPTEFPEGLGL 95
Query: 73 PCNLQREDVRDAFISLSAASLAELPAGSIVGTASLRRKSQILHRYPSLKVMENFRGNVQT 132
C +RED RDA IS A+LP G+ +GT++LRR++Q+L P ++ M RGNV+T
Sbjct: 96 HCITEREDPRDAVIS-RGTKFADLPQGAKIGTSALRRQAQLLKVRPDME-MVIIRGNVET 153
Query: 133 RLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPAVAQGAIGIACRSNDEKM-- 190
R+ KL + A +LA AGLKRL TE V L D +PA+ QGA+GI CR ++E++
Sbjct: 154 RINKLETEKLDAVILAAAGLKRLGFTEKVAEYLPTDLSIPAIGQGALGIECRLDNEEVKQ 213
Query: 191 -VPFTTH 196
+ F H
Sbjct: 214 TIDFFNH 220
>sp|C3K424|HEM3_PSEFS Porphobilinogen deaminase OS=Pseudomonas fluorescens (strain SBW25)
GN=hemC PE=3 SV=1
Length = 313
Score = 180 bits (456), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 96/187 (51%), Positives = 126/187 (67%), Gaps = 5/187 (2%)
Query: 4 HPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVP 63
HP L + +V + + GDK+L PL+ IGGKGLF KE++ AL+ ++ DIAVHSMKDVP
Sbjct: 31 HPGLK----VSLVPMVSRGDKLLDSPLSKIGGKGLFVKELETALLENEADIAVHSMKDVP 86
Query: 64 TYLPEKTILPCNLQREDVRDAFISLSAASLAELPAGSIVGTASLRRKSQILHRYPSLKVM 123
PE L C +RED RDAF+S + ASL LP GSIVGT+SLRR++Q+L R P L++
Sbjct: 87 MDFPEGLGLFCICEREDPRDAFVSNTYASLDALPLGSIVGTSSLRRQAQLLTRRPDLQI- 145
Query: 124 ENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPAVAQGAIGIAC 183
RGNV TRL KL+ A +LA AGL RL + +T+ +SV+D LPA QGA+GI C
Sbjct: 146 RFLRGNVNTRLAKLDAGEYDAIILAAAGLIRLGFEDRITSAISVEDSLPAGGQGAVGIEC 205
Query: 184 RSNDEKM 190
R+ D +
Sbjct: 206 RTADSDI 212
>sp|B1KQC6|HEM3_SHEWM Porphobilinogen deaminase OS=Shewanella woodyi (strain ATCC 51908 /
MS32) GN=hemC PE=3 SV=1
Length = 309
Score = 180 bits (456), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 91/188 (48%), Positives = 129/188 (68%), Gaps = 5/188 (2%)
Query: 3 LHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDV 62
HP+L ++++ + T GD IL PLA +GGKGLF KE++ A++ ++ DIAVHSMKDV
Sbjct: 30 FHPDLT----VELLPMSTKGDIILDTPLAKVGGKGLFVKELEVAMLENRADIAVHSMKDV 85
Query: 63 PTYLPEKTILPCNLQREDVRDAFISLSAASLAELPAGSIVGTASLRRKSQILHRYPSLKV 122
P PE L +RED RDAF+S + S++ELP G++VGT+SLRR+ QI P L++
Sbjct: 86 PVDFPEGLGLEIICEREDPRDAFVSNNYKSISELPKGAVVGTSSLRRQCQIRAARPDLQI 145
Query: 123 MENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPAVAQGAIGIA 182
+ RGNV TRL KL+ A +LA AGLKRL + E +T+ +S ++ LPA QGA+GI
Sbjct: 146 -RDLRGNVGTRLGKLDAGTYDAIILAAAGLKRLKLEERITSFISAEESLPANGQGAVGIE 204
Query: 183 CRSNDEKM 190
CR++DE++
Sbjct: 205 CRTDDERV 212
>sp|Q88B91|HEM3_PSESM Porphobilinogen deaminase OS=Pseudomonas syringae pv. tomato
(strain DC3000) GN=hemC PE=3 SV=1
Length = 313
Score = 180 bits (456), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 97/187 (51%), Positives = 125/187 (66%), Gaps = 5/187 (2%)
Query: 4 HPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVP 63
HP L + +V + + GDK+L PL+ IGGKGLF KE++ AL+ DIAVHSMKDVP
Sbjct: 31 HPGLL----VTLVPMVSRGDKLLDSPLSKIGGKGLFVKELETALLEDNADIAVHSMKDVP 86
Query: 64 TYLPEKTILPCNLQREDVRDAFISLSAASLAELPAGSIVGTASLRRKSQILHRYPSLKVM 123
P+ L C +RED RDAF+S + SL LPAGSIVGT+SLRR++Q+L R P L++
Sbjct: 87 MDFPQGLGLFCICEREDPRDAFVSNTFESLDALPAGSIVGTSSLRRQAQLLARRPDLQI- 145
Query: 124 ENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPAVAQGAIGIAC 183
RGNV TRL KL+ A +LA AGL RL + +T+ +SVDD LPA QGA+GI C
Sbjct: 146 RFLRGNVNTRLAKLDAGEYNAIILAAAGLIRLGFEDRITSAISVDDSLPAGGQGAVGIEC 205
Query: 184 RSNDEKM 190
RS D ++
Sbjct: 206 RSVDAEI 212
>sp|B3E2H7|HEM3_GEOLS Porphobilinogen deaminase OS=Geobacter lovleyi (strain ATCC
BAA-1151 / DSM 17278 / SZ) GN=hemC PE=3 SV=1
Length = 312
Score = 179 bits (455), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 92/175 (52%), Positives = 123/175 (70%), Gaps = 2/175 (1%)
Query: 13 IQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTIL 72
+++V IKT GDKIL PLA +GGKGLF KEI+EA++ +ID+AVHSMKDVPT PE L
Sbjct: 36 VELVKIKTMGDKILDVPLAQVGGKGLFVKEIEEAMLRGEIDLAVHSMKDVPTEFPEGLGL 95
Query: 73 PCNLQREDVRDAFISLSAASLAELPAGSIVGTASLRRKSQILHRYPSLKVMENFRGNVQT 132
+RED RDAFIS + +EL G+ +GT++LRR++Q+L P L+ M RGNV+T
Sbjct: 96 VVTTKREDPRDAFIS-DKVTFSELRQGARIGTSALRRQAQLLKARPDLE-MVIIRGNVET 153
Query: 133 RLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPAVAQGAIGIACRSND 187
R+RKL E + A +LA AGL RL T+ VT +L D +PA+ QGA+G+ CR +D
Sbjct: 154 RIRKLKEDNLDAVILAAAGLNRLGFTDVVTELLDTDFSIPAIGQGALGLECRLDD 208
>sp|Q6FFA9|HEM3_ACIAD Porphobilinogen deaminase OS=Acinetobacter sp. (strain ADP1)
GN=hemC PE=3 SV=1
Length = 311
Score = 179 bits (455), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 95/190 (50%), Positives = 131/190 (68%), Gaps = 5/190 (2%)
Query: 2 ALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKD 61
AL+PEL +++V T GDKIL PLA IGGKGLF KE++ AL++ + D+AVHSMKD
Sbjct: 32 ALYPELK----VELVKFVTQGDKILDTPLAKIGGKGLFVKELEAALLDGRADLAVHSMKD 87
Query: 62 VPTYLPEKTILPCNLQREDVRDAFISLSAASLAELPAGSIVGTASLRRKSQILHRYPSLK 121
VP +LPE L +RED DAF+S S +LP G+ VGT+SLRRK QIL + P L+
Sbjct: 88 VPMHLPEGLSLAVICEREDPLDAFVSNHVMSFDQLPLGARVGTSSLRRKCQILKQRPDLE 147
Query: 122 VMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPAVAQGAIGI 181
++ + RGNV TRL KL++ A +LA AGLKRL + + + ++ + LPAV QGA+G+
Sbjct: 148 II-DLRGNVGTRLAKLDDGQYDAIVLASAGLKRLGLISRIRHSINAEISLPAVGQGALGL 206
Query: 182 ACRSNDEKMV 191
CR+ND+K++
Sbjct: 207 ECRANDKKIL 216
>sp|A6VE37|HEM3_PSEA7 Porphobilinogen deaminase OS=Pseudomonas aeruginosa (strain PA7)
GN=hemC PE=3 SV=1
Length = 313
Score = 179 bits (453), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 95/187 (50%), Positives = 124/187 (66%), Gaps = 5/187 (2%)
Query: 4 HPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVP 63
HP+L + ++ + + GDK+L PLA IGGKGLF KE++ AL+ DIAVHSMKDVP
Sbjct: 31 HPDLT----VTLLPMTSRGDKLLDAPLAKIGGKGLFVKELETALLEGAADIAVHSMKDVP 86
Query: 64 TYLPEKTILPCNLQREDVRDAFISLSAASLAELPAGSIVGTASLRRKSQILHRYPSLKVM 123
PE L +RED RDAF+S + ASL +LPAGS+VGT+SLRR++Q+L R P L++
Sbjct: 87 MDFPEGLGLYTICEREDPRDAFVSNTYASLDQLPAGSVVGTSSLRRQAQLLARRPDLQI- 145
Query: 124 ENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPAVAQGAIGIAC 183
RGNV TRL KL+ A +LA AGL RL + + +SVDD LPA QGA+GI C
Sbjct: 146 RFLRGNVNTRLAKLDAGEYDAIILAAAGLIRLGFESRIRSSISVDDSLPAGGQGAVGIEC 205
Query: 184 RSNDEKM 190
R+ D +
Sbjct: 206 RTADADL 212
>sp|B7LU53|HEM3_ESCF3 Porphobilinogen deaminase OS=Escherichia fergusonii (strain ATCC
35469 / DSM 13698 / CDC 0568-73) GN=hemC PE=3 SV=1
Length = 313
Score = 179 bits (453), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 97/189 (51%), Positives = 126/189 (66%), Gaps = 5/189 (2%)
Query: 1 MALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMK 60
MA HP L +++V + T GD IL PLA +GGKGLF KE++ AL+ ++ DIAVHSMK
Sbjct: 28 MAKHPGLT----VELVPMVTRGDVILDTPLAKVGGKGLFVKELEVALLENRADIAVHSMK 83
Query: 61 DVPTYLPEKTILPCNLQREDVRDAFISLSAASLAELPAGSIVGTASLRRKSQILHRYPSL 120
DVP P+ L +RED RDAF+S ASL ELPAGSIVGT+SLRR+ Q+ R P L
Sbjct: 84 DVPVEFPQGLGLVTICEREDPRDAFVSNKYASLDELPAGSIVGTSSLRRQCQLAERRPDL 143
Query: 121 KVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPAVAQGAIG 180
++ + RGNV TRL KL+ A +LA+AGLKRL + + + L + LPAV QGA+G
Sbjct: 144 -IIRSLRGNVGTRLSKLDNGEYDAIILAVAGLKRLGLESRIRDALPPEVSLPAVGQGAVG 202
Query: 181 IACRSNDEK 189
I CR +D +
Sbjct: 203 IECRLDDTR 211
>sp|A9R8K0|HEM3_YERPG Porphobilinogen deaminase OS=Yersinia pestis bv. Antiqua (strain
Angola) GN=hemC PE=3 SV=1
Length = 313
Score = 178 bits (452), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 96/187 (51%), Positives = 126/187 (67%), Gaps = 5/187 (2%)
Query: 2 ALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKD 61
A HP L I++V + T GD IL PLA +GGKGLF KE++ AL++ + DIAVHSMKD
Sbjct: 29 ANHPGLQ----IELVPMVTRGDIILDTPLAKVGGKGLFVKELELALLDGRADIAVHSMKD 84
Query: 62 VPTYLPEKTILPCNLQREDVRDAFISLSAASLAELPAGSIVGTASLRRKSQILHRYPSLK 121
VP PE L +RED RDAF+S A L +LPAGS+VGT+SLRR+ Q+ R P L
Sbjct: 85 VPIAFPEGLGLVTICEREDPRDAFVSSHYAHLDDLPAGSVVGTSSLRRQCQLRERRPDL- 143
Query: 122 VMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPAVAQGAIGI 181
++ + RGNV TRL KL+ QA +LA+AGLKRL + + +S ++ LPAV QGA+GI
Sbjct: 144 IIRDLRGNVGTRLAKLDNGDYQAIILAVAGLKRLGLENRIRYAMSAEESLPAVGQGAVGI 203
Query: 182 ACRSNDE 188
CR +D+
Sbjct: 204 ECRLDDD 210
>sp|A4TRA8|HEM3_YERPP Porphobilinogen deaminase OS=Yersinia pestis (strain Pestoides F)
GN=hemC PE=3 SV=1
Length = 313
Score = 178 bits (452), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 96/187 (51%), Positives = 126/187 (67%), Gaps = 5/187 (2%)
Query: 2 ALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKD 61
A HP L I++V + T GD IL PLA +GGKGLF KE++ AL++ + DIAVHSMKD
Sbjct: 29 ANHPGLQ----IELVPMVTRGDIILDTPLAKVGGKGLFVKELELALLDGRADIAVHSMKD 84
Query: 62 VPTYLPEKTILPCNLQREDVRDAFISLSAASLAELPAGSIVGTASLRRKSQILHRYPSLK 121
VP PE L +RED RDAF+S A L +LPAGS+VGT+SLRR+ Q+ R P L
Sbjct: 85 VPIAFPEGLGLVTICEREDPRDAFVSSHYAHLDDLPAGSVVGTSSLRRQCQLRERRPDL- 143
Query: 122 VMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPAVAQGAIGI 181
++ + RGNV TRL KL+ QA +LA+AGLKRL + + +S ++ LPAV QGA+GI
Sbjct: 144 IIRDLRGNVGTRLAKLDNGDYQAIILAVAGLKRLGLENRIRYAMSAEESLPAVGQGAVGI 203
Query: 182 ACRSNDE 188
CR +D+
Sbjct: 204 ECRLDDD 210
>sp|Q1CNI3|HEM3_YERPN Porphobilinogen deaminase OS=Yersinia pestis bv. Antiqua (strain
Nepal516) GN=hemC PE=3 SV=1
Length = 313
Score = 178 bits (452), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 96/187 (51%), Positives = 126/187 (67%), Gaps = 5/187 (2%)
Query: 2 ALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKD 61
A HP L I++V + T GD IL PLA +GGKGLF KE++ AL++ + DIAVHSMKD
Sbjct: 29 ANHPGLQ----IELVPMVTRGDIILDTPLAKVGGKGLFVKELELALLDGRADIAVHSMKD 84
Query: 62 VPTYLPEKTILPCNLQREDVRDAFISLSAASLAELPAGSIVGTASLRRKSQILHRYPSLK 121
VP PE L +RED RDAF+S A L +LPAGS+VGT+SLRR+ Q+ R P L
Sbjct: 85 VPIAFPEGLGLVTICEREDPRDAFVSSHYAHLDDLPAGSVVGTSSLRRQCQLRERRPDL- 143
Query: 122 VMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPAVAQGAIGI 181
++ + RGNV TRL KL+ QA +LA+AGLKRL + + +S ++ LPAV QGA+GI
Sbjct: 144 IIRDLRGNVGTRLAKLDNGDYQAIILAVAGLKRLGLENRIRYAMSAEESLPAVGQGAVGI 203
Query: 182 ACRSNDE 188
CR +D+
Sbjct: 204 ECRLDDD 210
>sp|P46355|HEM3_YERPE Porphobilinogen deaminase OS=Yersinia pestis GN=hemC PE=3 SV=2
Length = 313
Score = 178 bits (452), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 96/187 (51%), Positives = 126/187 (67%), Gaps = 5/187 (2%)
Query: 2 ALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKD 61
A HP L I++V + T GD IL PLA +GGKGLF KE++ AL++ + DIAVHSMKD
Sbjct: 29 ANHPGLQ----IELVPMVTRGDIILDTPLAKVGGKGLFVKELELALLDGRADIAVHSMKD 84
Query: 62 VPTYLPEKTILPCNLQREDVRDAFISLSAASLAELPAGSIVGTASLRRKSQILHRYPSLK 121
VP PE L +RED RDAF+S A L +LPAGS+VGT+SLRR+ Q+ R P L
Sbjct: 85 VPIAFPEGLGLVTICEREDPRDAFVSSHYAHLDDLPAGSVVGTSSLRRQCQLRERRPDL- 143
Query: 122 VMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPAVAQGAIGI 181
++ + RGNV TRL KL+ QA +LA+AGLKRL + + +S ++ LPAV QGA+GI
Sbjct: 144 IIRDLRGNVGTRLAKLDNGDYQAIILAVAGLKRLGLENRIRYAMSAEESLPAVGQGAVGI 203
Query: 182 ACRSNDE 188
CR +D+
Sbjct: 204 ECRLDDD 210
>sp|Q1CBN1|HEM3_YERPA Porphobilinogen deaminase OS=Yersinia pestis bv. Antiqua (strain
Antiqua) GN=hemC PE=3 SV=1
Length = 313
Score = 178 bits (452), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 96/187 (51%), Positives = 126/187 (67%), Gaps = 5/187 (2%)
Query: 2 ALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKD 61
A HP L I++V + T GD IL PLA +GGKGLF KE++ AL++ + DIAVHSMKD
Sbjct: 29 ANHPGLQ----IELVPMVTRGDIILDTPLAKVGGKGLFVKELELALLDGRADIAVHSMKD 84
Query: 62 VPTYLPEKTILPCNLQREDVRDAFISLSAASLAELPAGSIVGTASLRRKSQILHRYPSLK 121
VP PE L +RED RDAF+S A L +LPAGS+VGT+SLRR+ Q+ R P L
Sbjct: 85 VPIAFPEGLGLVTICEREDPRDAFVSSHYAHLDDLPAGSVVGTSSLRRQCQLRERRPDL- 143
Query: 122 VMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPAVAQGAIGI 181
++ + RGNV TRL KL+ QA +LA+AGLKRL + + +S ++ LPAV QGA+GI
Sbjct: 144 IIRDLRGNVGTRLAKLDNGDYQAIILAVAGLKRLGLENRIRYAMSAEESLPAVGQGAVGI 203
Query: 182 ACRSNDE 188
CR +D+
Sbjct: 204 ECRLDDD 210
>sp|A7FD67|HEM3_YERP3 Porphobilinogen deaminase OS=Yersinia pseudotuberculosis serotype
O:1b (strain IP 31758) GN=hemC PE=3 SV=1
Length = 313
Score = 178 bits (452), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 96/187 (51%), Positives = 126/187 (67%), Gaps = 5/187 (2%)
Query: 2 ALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKD 61
A HP L I++V + T GD IL PLA +GGKGLF KE++ AL++ + DIAVHSMKD
Sbjct: 29 ANHPGLQ----IELVPMVTRGDIILDTPLAKVGGKGLFVKELELALLDGRADIAVHSMKD 84
Query: 62 VPTYLPEKTILPCNLQREDVRDAFISLSAASLAELPAGSIVGTASLRRKSQILHRYPSLK 121
VP PE L +RED RDAF+S A L +LPAGS+VGT+SLRR+ Q+ R P L
Sbjct: 85 VPIAFPEGLGLVTICEREDPRDAFVSSHYAHLDDLPAGSVVGTSSLRRQCQLRERRPDL- 143
Query: 122 VMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPAVAQGAIGI 181
++ + RGNV TRL KL+ QA +LA+AGLKRL + + +S ++ LPAV QGA+GI
Sbjct: 144 IIRDLRGNVGTRLAKLDNGDYQAIILAVAGLKRLGLENRIRYAMSAEESLPAVGQGAVGI 203
Query: 182 ACRSNDE 188
CR +D+
Sbjct: 204 ECRLDDD 210
>sp|B1I4L8|HEM3_DESAP Porphobilinogen deaminase OS=Desulforudis audaxviator (strain
MP104C) GN=hemC PE=3 SV=1
Length = 309
Score = 178 bits (451), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 95/174 (54%), Positives = 125/174 (71%), Gaps = 1/174 (0%)
Query: 18 IKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQ 77
I+TTGD IL LA IG KGLFTKE+++AL++ +ID+AVHSMKD+PT LPE ++
Sbjct: 40 IRTTGDNILEVALAKIGDKGLFTKELEQALLHREIDLAVHSMKDLPTGLPEGLVIGAVSV 99
Query: 78 REDVRDAFISLSAASLAELPAGSIVGTASLRRKSQILHRYPSLKVMENFRGNVQTRLRKL 137
RE D FIS L ELPAG+++GT+SLRR +Q+L P L+V+ RGNVQTRLRKL
Sbjct: 100 REYPGDVFISRGGERLEELPAGAVLGTSSLRRTAQLLAYRPDLQVI-PVRGNVQTRLRKL 158
Query: 138 NERVVQATLLALAGLKRLSMTENVTNILSVDDMLPAVAQGAIGIACRSNDEKMV 191
+E VV A +LA AGL RL +TE VT+ + V LPAV QGA+GI R++D +++
Sbjct: 159 DEGVVDALVLAWAGLFRLGLTERVTHRIPVAMCLPAVGQGALGIEARADDAEIL 212
>sp|Q66G00|HEM3_YERPS Porphobilinogen deaminase OS=Yersinia pseudotuberculosis serotype I
(strain IP32953) GN=hemC PE=3 SV=1
Length = 313
Score = 178 bits (451), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 95/185 (51%), Positives = 125/185 (67%), Gaps = 5/185 (2%)
Query: 4 HPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVP 63
HP L I++V + T GD IL PLA +GGKGLF KE++ AL++ + DIAVHSMKDVP
Sbjct: 31 HPGLQ----IELVPMVTRGDIILDTPLAKVGGKGLFVKELELALLDGRADIAVHSMKDVP 86
Query: 64 TYLPEKTILPCNLQREDVRDAFISLSAASLAELPAGSIVGTASLRRKSQILHRYPSLKVM 123
PE L +RED RDAF+S A L +LPAGS+VGT+SLRR+ Q+ R P L ++
Sbjct: 87 IAFPEGLGLVAICEREDPRDAFVSSHYAHLDDLPAGSVVGTSSLRRQCQLRERRPDL-II 145
Query: 124 ENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPAVAQGAIGIAC 183
+ RGNV TRL KL+ QA +LA+AGLKRL + + +S ++ LPAV QGA+GI C
Sbjct: 146 RDLRGNVGTRLAKLDNGDYQAIILAVAGLKRLGLETRIRYAMSAEESLPAVGQGAVGIEC 205
Query: 184 RSNDE 188
R +D+
Sbjct: 206 RLDDD 210
>sp|B2K065|HEM3_YERPB Porphobilinogen deaminase OS=Yersinia pseudotuberculosis serotype
IB (strain PB1/+) GN=hemC PE=3 SV=1
Length = 313
Score = 178 bits (451), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 95/185 (51%), Positives = 125/185 (67%), Gaps = 5/185 (2%)
Query: 4 HPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVP 63
HP L I++V + T GD IL PLA +GGKGLF KE++ AL++ + DIAVHSMKDVP
Sbjct: 31 HPGLQ----IELVPMVTRGDIILDTPLAKVGGKGLFVKELELALLDGRADIAVHSMKDVP 86
Query: 64 TYLPEKTILPCNLQREDVRDAFISLSAASLAELPAGSIVGTASLRRKSQILHRYPSLKVM 123
PE L +RED RDAF+S A L +LPAGS+VGT+SLRR+ Q+ R P L ++
Sbjct: 87 IAFPEGLGLVAICEREDPRDAFVSSHYAHLDDLPAGSVVGTSSLRRQCQLRERRPDL-II 145
Query: 124 ENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPAVAQGAIGIAC 183
+ RGNV TRL KL+ QA +LA+AGLKRL + + +S ++ LPAV QGA+GI C
Sbjct: 146 RDLRGNVGTRLAKLDNGDYQAIILAVAGLKRLGLETRIRYAMSAEESLPAVGQGAVGIEC 205
Query: 184 RSNDE 188
R +D+
Sbjct: 206 RLDDD 210
>sp|Q5WEP5|HEM3_BACSK Porphobilinogen deaminase OS=Bacillus clausii (strain KSM-K16)
GN=hemC PE=3 SV=1
Length = 311
Score = 178 bits (451), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 94/171 (54%), Positives = 120/171 (70%), Gaps = 2/171 (1%)
Query: 18 IKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQ 77
I T GD+IL L+ +GGKGLF KEI+ AL + +ID+AVHSMKDVP+ L E+ L +
Sbjct: 39 IVTKGDRILDVTLSKVGGKGLFVKEIEAALRSGEIDVAVHSMKDVPSELLEEFTLAAITE 98
Query: 78 REDVRDAFISLSAASLAELPAGSIVGTASLRRKSQILHRYPSLKVMENFRGNVQTRLRKL 137
RED RD +S + +L ELPAG+IVGT+SLRR +QILHR P ++V + RGNV+TRLRKL
Sbjct: 99 REDPRDVLVSENGHTLDELPAGAIVGTSSLRRSAQILHRRPDVQV-KWIRGNVETRLRKL 157
Query: 138 NERVVQATLLALAGLKRLSMTENV-TNILSVDDMLPAVAQGAIGIACRSND 187
E A +LA AGLKRL E+V T L D LPA+ QGA+G+ CR +D
Sbjct: 158 KEEDFSAIVLAAAGLKRLGYGEDVITEYLDKDVCLPAIGQGALGLECRVDD 208
>sp|Q9K8G0|HEM3_BACHD Porphobilinogen deaminase OS=Bacillus halodurans (strain ATCC
BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
GN=hemC PE=3 SV=1
Length = 311
Score = 178 bits (451), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 96/180 (53%), Positives = 125/180 (69%), Gaps = 2/180 (1%)
Query: 13 IQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTIL 72
+I I T GD+IL L+ +GGKGLF KEI++A+ N +IDIAVHSMKDVP+ L E L
Sbjct: 34 FEIKKIITKGDQILDVTLSKVGGKGLFVKEIEQAMANKEIDIAVHSMKDVPSVLQEGFAL 93
Query: 73 PCNLQREDVRDAFISLSAASLAELPAGSIVGTASLRRKSQILHRYPSLKVMENFRGNVQT 132
R D RDA IS +LAELPAGSIVGT+SLRR +QIL + P L+V + RGN++T
Sbjct: 94 GATTTRVDPRDALISNEGYTLAELPAGSIVGTSSLRRSAQILAKRPDLEV-KWIRGNIET 152
Query: 133 RLRKLNERVVQATLLALAGLKRLSMT-ENVTNILSVDDMLPAVAQGAIGIACRSNDEKMV 191
RLRKL E A +LA AGL+R+ + E VT L D +PAV QGA+GI CR++D++++
Sbjct: 153 RLRKLKEEDFDAIILAAAGLERMGWSNEIVTEYLDPDLCVPAVGQGALGIECRADDDEVL 212
>sp|Q60169|HEM3_PSEAE Porphobilinogen deaminase OS=Pseudomonas aeruginosa (strain ATCC
15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=hemC PE=3
SV=2
Length = 313
Score = 178 bits (451), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 95/187 (50%), Positives = 123/187 (65%), Gaps = 5/187 (2%)
Query: 4 HPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVP 63
HP L + ++ + + GDK+L PLA IGGKGLF KE++ AL+ DIAVHSMKDVP
Sbjct: 31 HPGLT----VTLLPMTSRGDKLLDAPLAKIGGKGLFVKELETALLEGAADIAVHSMKDVP 86
Query: 64 TYLPEKTILPCNLQREDVRDAFISLSAASLAELPAGSIVGTASLRRKSQILHRYPSLKVM 123
PE L +RED RDAF+S + ASL +LPAGS+VGT+SLRR++Q+L R P L++
Sbjct: 87 MDFPEGLGLYTICEREDPRDAFVSNTYASLEQLPAGSVVGTSSLRRQAQLLARRPDLQI- 145
Query: 124 ENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPAVAQGAIGIAC 183
RGNV TRL KL+ A +LA AGL RL + + +SVDD LPA QGA+GI C
Sbjct: 146 RFLRGNVNTRLAKLDAGEYDAIILAAAGLIRLGFESRIRSSISVDDSLPAGGQGAVGIEC 205
Query: 184 RSNDEKM 190
R+ D +
Sbjct: 206 RTADSDL 212
>sp|B7V5F0|HEM3_PSEA8 Porphobilinogen deaminase OS=Pseudomonas aeruginosa (strain LESB58)
GN=hemC PE=3 SV=1
Length = 313
Score = 178 bits (451), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 95/187 (50%), Positives = 123/187 (65%), Gaps = 5/187 (2%)
Query: 4 HPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVP 63
HP L + ++ + + GDK+L PLA IGGKGLF KE++ AL+ DIAVHSMKDVP
Sbjct: 31 HPGLT----VTLLPMTSRGDKLLDAPLAKIGGKGLFVKELETALLEGAADIAVHSMKDVP 86
Query: 64 TYLPEKTILPCNLQREDVRDAFISLSAASLAELPAGSIVGTASLRRKSQILHRYPSLKVM 123
PE L +RED RDAF+S + ASL +LPAGS+VGT+SLRR++Q+L R P L++
Sbjct: 87 MDFPEGLGLYTICEREDPRDAFVSNTYASLEQLPAGSVVGTSSLRRQAQLLARRPDLQI- 145
Query: 124 ENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPAVAQGAIGIAC 183
RGNV TRL KL+ A +LA AGL RL + + +SVDD LPA QGA+GI C
Sbjct: 146 RFLRGNVNTRLAKLDAGEYDAIILAAAGLIRLGFESRIRSSISVDDSLPAGGQGAVGIEC 205
Query: 184 RSNDEKM 190
R+ D +
Sbjct: 206 RTADSDL 212
>sp|Q02EA3|HEM3_PSEAB Porphobilinogen deaminase OS=Pseudomonas aeruginosa (strain
UCBPP-PA14) GN=hemC PE=3 SV=1
Length = 313
Score = 178 bits (451), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 95/187 (50%), Positives = 123/187 (65%), Gaps = 5/187 (2%)
Query: 4 HPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVP 63
HP L + ++ + + GDK+L PLA IGGKGLF KE++ AL+ DIAVHSMKDVP
Sbjct: 31 HPGLT----VTLLPMTSRGDKLLDAPLAKIGGKGLFVKELETALLEGAADIAVHSMKDVP 86
Query: 64 TYLPEKTILPCNLQREDVRDAFISLSAASLAELPAGSIVGTASLRRKSQILHRYPSLKVM 123
PE L +RED RDAF+S + ASL +LPAGS+VGT+SLRR++Q+L R P L++
Sbjct: 87 MDFPEGLGLYTICEREDPRDAFVSNTYASLEQLPAGSVVGTSSLRRQAQLLARRPDLQI- 145
Query: 124 ENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPAVAQGAIGIAC 183
RGNV TRL KL+ A +LA AGL RL + + +SVDD LPA QGA+GI C
Sbjct: 146 RFLRGNVNTRLAKLDAGEYDAIILAAAGLIRLGFESRIRSSISVDDSLPAGGQGAVGIEC 205
Query: 184 RSNDEKM 190
R+ D +
Sbjct: 206 RTADSDL 212
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.135 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,771,083
Number of Sequences: 539616
Number of extensions: 2966794
Number of successful extensions: 9036
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 7843
Number of HSP's gapped (non-prelim): 481
length of query: 237
length of database: 191,569,459
effective HSP length: 114
effective length of query: 123
effective length of database: 130,053,235
effective search space: 15996547905
effective search space used: 15996547905
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)