Query 026500
Match_columns 237
No_of_seqs 129 out of 1024
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 15:03:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026500.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026500hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gtk_A Porphobilinogen deamina 100.0 2.7E-83 9.3E-88 587.4 19.9 210 3-224 30-239 (313)
2 3ecr_A Porphobilinogen deamina 100.0 2.1E-81 7.1E-86 583.1 18.2 210 3-224 48-261 (364)
3 3kzg_A Arginine 3RD transport 96.8 0.0028 9.5E-08 51.2 7.2 107 41-153 53-163 (237)
4 3qax_A Probable ABC transporte 96.5 0.007 2.4E-07 49.2 7.6 149 41-195 80-232 (268)
5 3del_B Arginine binding protei 96.5 0.0043 1.5E-07 49.9 6.2 149 41-195 60-211 (242)
6 3tql_A Arginine-binding protei 96.3 0.0083 2.9E-07 47.1 6.4 147 41-195 51-207 (227)
7 2y7i_A STM4351; arginine-bindi 96.0 0.036 1.2E-06 43.8 8.8 149 41-195 55-207 (229)
8 3k4u_A Binding component of AB 95.8 0.012 4.3E-07 47.5 5.5 143 41-195 54-207 (245)
9 1wdn_A GLNBP, glutamine bindin 95.4 0.021 7.1E-07 44.8 5.3 142 41-195 51-201 (226)
10 3un6_A Hypothetical protein sa 95.4 0.012 4E-07 51.5 4.0 105 41-150 93-211 (341)
11 2yjp_A Putative ABC transporte 95.0 0.078 2.7E-06 44.7 8.0 145 41-195 107-255 (291)
12 1zbm_A Hypothetical protein AF 94.9 0.074 2.5E-06 44.7 7.4 100 41-148 48-151 (280)
13 3kbr_A Cyclohexadienyl dehydra 94.9 0.014 4.9E-07 46.7 2.8 146 41-195 64-216 (239)
14 3i6v_A Periplasmic His/Glu/Gln 94.8 0.084 2.9E-06 42.7 7.4 139 41-195 54-196 (232)
15 3mpk_A Virulence sensor protei 94.7 0.12 4.1E-06 42.7 8.3 143 41-195 82-232 (267)
16 2yln_A Putative ABC transporte 94.7 0.045 1.5E-06 46.1 5.7 144 41-195 106-256 (283)
17 3ksx_A Nitrate transport prote 94.7 0.37 1.3E-05 41.3 11.6 104 42-151 70-188 (324)
18 2czl_A Hypothetical protein TT 94.4 0.13 4.5E-06 42.9 7.9 101 41-148 40-144 (272)
19 3qsl_A Putative exported prote 93.8 0.088 3E-06 44.7 5.6 109 41-152 75-198 (346)
20 4eq9_A ABC transporter substra 93.7 0.21 7.1E-06 39.7 7.4 144 41-195 57-214 (246)
21 1xt8_A Putative amino-acid tra 93.4 0.086 2.9E-06 44.1 4.9 145 41-195 96-244 (292)
22 1lst_A Lysine, arginine, ornit 93.4 0.057 2E-06 43.0 3.5 105 41-151 53-164 (239)
23 4h5g_A Amino acid ABC superfam 93.3 0.15 5.1E-06 41.7 6.1 105 41-150 64-173 (243)
24 4i62_A Amino acid ABC transpor 93.3 0.22 7.4E-06 40.2 7.0 147 41-195 91-243 (269)
25 3uif_A Sulfonate ABC transport 92.8 0.32 1.1E-05 42.4 7.9 103 41-150 58-175 (348)
26 2pyy_A Ionotropic glutamate re 92.6 0.16 5.4E-06 39.7 5.1 105 40-152 50-162 (228)
27 4f3p_A Glutamine-binding perip 92.5 0.26 8.8E-06 39.8 6.4 141 41-195 72-221 (249)
28 3hv1_A Polar amino acid ABC up 92.3 0.066 2.3E-06 43.9 2.6 143 41-195 70-227 (268)
29 1ii5_A SLR1257 protein; membra 92.2 0.24 8.2E-06 38.9 5.7 105 41-152 55-166 (233)
30 2vha_A Periplasmic binding tra 92.1 0.28 9.6E-06 40.6 6.3 143 41-195 73-227 (287)
31 2q88_A EHUB, putative ABC tran 91.7 0.12 4E-06 41.9 3.3 145 41-195 62-219 (257)
32 2v25_A Major cell-binding fact 91.6 0.18 6.2E-06 40.3 4.4 142 41-195 91-240 (259)
33 4gvo_A LMO2349 protein; struct 91.5 0.18 6E-06 41.2 4.3 143 41-195 59-214 (243)
34 1xs5_A 29 kDa protein, membran 91.3 0.084 2.9E-06 45.6 2.2 63 41-106 41-108 (241)
35 3h7m_A Sensor protein; histidi 90.8 0.21 7.2E-06 39.3 3.9 141 41-195 60-209 (234)
36 3ix1_A N-formyl-4-amino-5-amin 89.1 1.4 4.8E-05 37.1 8.0 100 42-147 46-158 (302)
37 2pvu_A ARTJ; basic amino acid 89.0 0.57 1.9E-05 38.5 5.4 107 40-152 89-200 (272)
38 2a5s_A N-methyl-D-aspartate re 87.2 0.37 1.3E-05 40.7 3.2 107 41-153 95-218 (284)
39 2x7q_A Ca3427, possible thiami 86.3 1.2 4.2E-05 38.3 6.0 101 42-147 57-176 (321)
40 4dz1_A DALS D-alanine transpor 86.0 0.44 1.5E-05 39.0 2.9 140 41-195 78-233 (259)
41 2ozz_A Hypothetical protein YH 85.8 0.3 1E-05 42.6 1.9 141 45-196 59-208 (231)
42 2g29_A Nitrate transport prote 84.5 2.5 8.4E-05 38.4 7.5 102 41-149 74-212 (417)
43 2iee_A ORF2, probable ABC tran 83.3 1.7 5.9E-05 35.7 5.4 141 41-195 73-225 (271)
44 2x26_A Periplasmic aliphatic s 83.2 1.6 5.4E-05 36.7 5.2 106 41-150 43-161 (308)
45 2pfz_A Putative exported prote 82.9 14 0.00047 31.9 11.3 132 41-185 48-214 (301)
46 3hn0_A Nitrate transport prote 81.0 1.7 5.7E-05 37.3 4.6 95 40-149 43-151 (283)
47 2pfy_A Putative exported prote 80.5 14 0.00047 31.8 10.4 133 41-186 49-216 (301)
48 4esw_A Pyrimidine biosynthesis 78.2 9.9 0.00034 32.9 8.8 113 42-159 50-182 (342)
49 1sw5_A Osmoprotection protein 78.1 6.4 0.00022 33.5 7.4 147 41-198 46-238 (275)
50 3p7i_A PHND, subunit of alkylp 74.9 3 0.0001 36.8 4.5 112 41-154 57-190 (321)
51 1p99_A Hypothetical protein PG 72.8 0.62 2.1E-05 41.2 -0.4 71 42-114 77-156 (295)
52 3gxa_A Outer membrane lipoprot 71.9 0.91 3.1E-05 40.7 0.4 144 42-203 63-245 (275)
53 2i49_A Bicarbonate transporter 70.9 5 0.00017 36.9 5.2 101 42-148 78-219 (429)
54 4ib2_A Putative lipoprotein; p 67.5 0.79 2.7E-05 40.5 -1.0 72 42-115 50-129 (252)
55 3oxn_A Putative transcriptiona 64.4 8.2 0.00028 30.3 4.6 49 100-149 21-76 (241)
56 2hxr_A HTH-type transcriptiona 62.9 11 0.00037 29.4 5.0 48 100-148 32-86 (238)
57 4ab5_A Transcriptional regulat 60.6 5.6 0.00019 30.4 2.9 48 101-149 11-65 (222)
58 2fyi_A HTH-type transcriptiona 60.3 11 0.00036 29.6 4.5 48 100-148 16-70 (228)
59 1twy_A ABC transporter, peripl 57.8 16 0.00053 29.4 5.2 49 100-149 30-84 (290)
60 2h9b_A HTH-type transcriptiona 57.3 17 0.00058 30.2 5.6 40 108-148 107-146 (312)
61 2zzv_A ABC transporter, solute 55.0 97 0.0033 27.2 10.4 109 41-157 81-228 (361)
62 2ql3_A Probable transcriptiona 53.7 16 0.00056 27.7 4.5 40 108-148 22-61 (209)
63 2vpn_A Periplasmic substrate b 53.6 49 0.0017 28.6 8.1 112 41-161 46-198 (316)
64 1i6a_A OXYR, hydrogen peroxide 53.3 12 0.00042 28.9 3.8 47 101-148 8-61 (219)
65 2i6e_A Hypothetical protein; N 52.6 34 0.0012 29.7 7.0 98 41-148 48-154 (301)
66 2rc8_A Glutamate [NMDA] recept 52.4 6.6 0.00022 33.0 2.2 108 42-153 107-229 (294)
67 3n5l_A Binding protein compone 51.6 8.5 0.00029 33.4 2.8 112 41-154 47-181 (310)
68 3ho7_A OXYR; beta-alpha-barrel 51.0 16 0.00055 28.0 4.1 48 101-149 14-68 (232)
69 3k2d_A ABC-type metal ION tran 45.6 18 0.0006 31.6 3.9 72 42-115 46-125 (237)
70 1ex2_A Protein MAF; structural 45.6 12 0.00041 31.4 2.7 24 100-123 5-28 (189)
71 4ddd_A Immunogenic protein; ss 44.8 57 0.0019 28.3 7.1 102 42-148 78-202 (327)
72 1pb7_A N-methyl-D-aspartate re 43.9 4.3 0.00015 34.3 -0.3 26 127-152 203-228 (292)
73 3jv9_A OXYR, transcriptional r 42.5 20 0.00067 27.1 3.3 48 101-149 7-61 (219)
74 2y7p_A LYSR-type regulatory pr 42.1 15 0.00052 28.8 2.7 47 101-148 11-64 (218)
75 3onm_A Transcriptional regulat 41.8 28 0.00097 27.2 4.3 49 101-150 30-85 (238)
76 1us5_A Putative GLUR0 ligand b 41.3 1.1E+02 0.0036 25.3 8.0 103 40-148 60-187 (314)
77 2h98_A HTH-type transcriptiona 40.8 30 0.001 28.9 4.6 40 108-148 107-146 (313)
78 3ir1_A Outer membrane lipoprot 39.7 22 0.00075 31.2 3.6 73 42-116 41-121 (245)
79 3tqw_A Methionine-binding prot 36.1 16 0.00053 32.0 2.0 73 42-116 43-123 (240)
80 2p5x_A ASMTL, N-acetylserotoni 35.7 23 0.00079 30.6 3.0 24 100-123 6-29 (230)
81 3up9_A Putative uncharacterize 35.6 18 0.00063 31.6 2.4 72 42-115 47-126 (245)
82 1ixc_A CBNR, LYSR-type regulat 35.2 38 0.0013 27.3 4.2 41 108-149 108-148 (294)
83 2amh_A Septum formation protei 35.1 18 0.00061 30.8 2.2 18 101-118 13-30 (207)
84 2nxo_A Hypothetical protein SC 34.0 17 0.0006 30.7 2.0 63 40-105 42-107 (291)
85 2esn_A Probable transcriptiona 33.1 21 0.00073 29.2 2.3 38 110-148 120-157 (310)
86 2de3_A Dibenzothiophene desulf 33.0 97 0.0033 27.3 6.8 57 47-106 61-126 (365)
87 3fxq_A LYSR type regulator of 30.7 28 0.00096 28.6 2.6 41 108-149 109-149 (305)
88 4ef1_A Pheromone COB1/lipoprot 29.0 27 0.00092 30.5 2.3 148 42-203 43-230 (246)
89 3fzv_A Probable transcriptiona 28.6 50 0.0017 26.7 3.8 40 108-148 112-151 (306)
90 3jv9_A OXYR, transcriptional r 28.0 45 0.0015 25.0 3.2 131 40-186 42-192 (219)
91 1al3_A Cys regulon transcripti 27.6 57 0.002 27.1 4.1 47 101-148 96-149 (324)
92 1i6a_A OXYR, hydrogen peroxide 23.7 41 0.0014 25.8 2.3 20 40-59 43-62 (219)
93 4got_A Methionine-binding lipo 22.5 43 0.0015 29.3 2.4 149 42-202 45-232 (249)
94 3gqv_A Enoyl reductase; medium 22.4 1.1E+02 0.0039 26.7 5.2 50 101-151 192-241 (371)
95 1uth_A LYSR-type regulatory pr 22.1 50 0.0017 27.4 2.7 48 100-148 107-161 (315)
96 2y7p_A LYSR-type regulatory pr 21.7 44 0.0015 26.0 2.1 18 41-58 47-64 (218)
97 3cvg_A Putative metal binding 21.7 83 0.0028 26.6 4.0 49 100-149 22-82 (294)
98 1rq8_A Conserved hypothetical 21.5 40 0.0014 25.8 1.8 25 28-52 18-45 (104)
99 2fyi_A HTH-type transcriptiona 21.4 48 0.0017 25.7 2.3 104 40-150 52-167 (228)
100 3oxn_A Putative transcriptiona 21.3 62 0.0021 25.1 2.9 102 41-150 58-169 (241)
101 3ho7_A OXYR; beta-alpha-barrel 20.2 74 0.0025 24.2 3.1 96 40-142 49-157 (232)
No 1
>1gtk_A Porphobilinogen deaminase; lyase, biosynthesis of linear tetrapyrrole, all alpha/beta; HET: DPM; 1.66A {Escherichia coli} SCOP: c.94.1.1 d.50.2.1 PDB: 1ah5_A* 2ypn_A* 1ypn_A* 1pda_A*
Probab=100.00 E-value=2.7e-83 Score=587.38 Aligned_cols=210 Identities=45% Similarity=0.669 Sum_probs=186.1
Q ss_pred CCCCCCCCCcEEEEEEeecCcccCCccccccCcccccHHHHHHHHhcCCccEEEeeCCCCCCCCCCCceeeeecCCCCCC
Q 026500 3 LHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVR 82 (237)
Q Consensus 3 ~~p~l~~~~~~eiv~i~T~GD~~~~~~L~~iggkGlFtkeLe~aLl~g~iDiAVHSlKDlP~~l~~gL~iaav~~R~dpr 82 (237)
.||++ +||+++|+|+||+++++||+++||||+||||||+||++|+||||||||||||+++|+||.++||++|+|||
T Consensus 30 ~~p~~----~~ei~~i~T~GD~i~d~pL~~iGgkGlFtkELe~aLl~g~iDiAVHSlKDvPt~lp~gl~l~av~~Redpr 105 (313)
T 1gtk_A 30 SHPGL----VVELVPMVTRGDVILDTPLAKVGGKGLFVKELEVALLENRADIAVHSMKDVPVEFPQGLGLVTICEREDPR 105 (313)
T ss_dssp HCTTC----EEEEEECC-----------------CTTHHHHHHHHHTTSCSEEEEEGGGSCSCCCTTEEEEEECCCCCCC
T ss_pred hCCCC----cEEEEeeecCCcccccccHHHcCCccchHHHHHHHHHcCCCcEEEecCCCCCCCCCCCcEEEEEecCCCcc
Confidence 47888 79999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeCCCCCCccCCCCCeeecCChhHHHHHHHhCCCCeEEeccCCCHHHHHHhhccCCccEEeeecccccccCCCCcce
Q 026500 83 DAFISLSAASLAELPAGSIVGTASLRRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTENVT 162 (237)
Q Consensus 83 D~LV~~~~~~l~~Lp~ga~IGTSS~RR~aql~~~~pdl~v~~~iRGNV~TRL~KL~~ge~DaiILA~AGL~RLgl~~~i~ 162 (237)
|+||++++.++++||+|++|||||+||++||+++|||++|+ ++||||+|||+||++|+|||||||+|||+|||+.++++
T Consensus 106 DalV~~~~~~l~~LP~Ga~VGTSSlRR~aQL~~~rPdl~i~-~lRGNV~TRL~KL~~g~~DaiiLA~AGL~RLgl~~~i~ 184 (313)
T 1gtk_A 106 DAFVSNNYDSLDALPAGSIVGTSSLRRQCQLAERRPDLIIR-SLRGNVGTRLSKLDNGEYDAIILAVAGLKRLGLESRIR 184 (313)
T ss_dssp EEEECSSCSSGGGCCTTCEEECCCHHHHHHHHHHCTTSEEE-CCCSCHHHHHHHHHTTSCSEEEEEHHHHHHTTCGGGCS
T ss_pred eEEEECCCCChhhCCCCCEEecCCHHHHHHHHHHCCCCEEE-eCCCCHHHHHHHhhCCCCCEEEHhhhHHHHcCCccccc
Confidence 99999998899999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred eeecCCCCCCCCCCceEEEEEecCchhhhhhhcccccccccccccccchhHHHHHHHHhhhh
Q 026500 163 NILSVDDMLPAVAQGAIGIACRSNDEKMVPFTTHSQASILNTFNCSGKLCYKLHFGFLNLVE 224 (237)
Q Consensus 163 ~~l~~~~~lPA~GQGalave~R~~d~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~ 224 (237)
++|++++|+|||||||||||||++|+++.++|+.++ +=.+..|+..||.||+.|+
T Consensus 185 ~~l~~~~~lPA~gQGalaIe~r~~d~~~~~ll~~l~-------d~~t~~~~~aERa~l~~L~ 239 (313)
T 1gtk_A 185 AALPPEISLPAVGQGAVGIECRLDDSRTRELLAALN-------HHETALRVTAERAMNTRLE 239 (313)
T ss_dssp EECCTTTSCCCTTTTCEEEEEETTCHHHHHHHGGGC-------CHHHHHHHHHHHHHHHHHT
T ss_pred eeeChhhcCCCcCCceEEEEEccCcHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999998887 4347889999999999886
No 2
>3ecr_A Porphobilinogen deaminase; heme biosynthesis, porphobilinogen hinge, alternative splicing, cytoplasm, disease mutation, porphyrin biosynthesis; HET: DPM; 2.18A {Homo sapiens} PDB: 3eq1_A*
Probab=100.00 E-value=2.1e-81 Score=583.11 Aligned_cols=210 Identities=39% Similarity=0.610 Sum_probs=182.7
Q ss_pred CCCCCCCCCcEEEEEEeecCcccCCccccccCcccccHHHHHHHHhcCCccEEEeeCCCCCCCCCCCceeeeecCCCCCC
Q 026500 3 LHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVR 82 (237)
Q Consensus 3 ~~p~l~~~~~~eiv~i~T~GD~~~~~~L~~iggkGlFtkeLe~aLl~g~iDiAVHSlKDlP~~l~~gL~iaav~~R~dpr 82 (237)
.||++ +|||++|+|+||+++++||++|||||+||||||+||++|+||||||||||||+++|+||.|+||++|+|||
T Consensus 48 ~~p~~----~~eiv~i~T~GD~ild~pL~~iGgKGlFtkELe~ALl~g~iDiAVHSlKDvPt~lp~gl~l~av~~ReDpr 123 (364)
T 3ecr_A 48 SYPGL----QFEIIAMSTTGDKILDTALSKIGEKSLFTKELEHALEKNEVDLVVHSLKDLPTVLPPGFTIGAICKRENPH 123 (364)
T ss_dssp HCTTS----EEEEEEC-------------------CCHHHHHHHHHTTSCSEEEEEGGGSCSSCCTTEEEEEECCCCCCC
T ss_pred hCCCC----eEEEEEeeccCccccCCcHHHcCCceeeHHHHHHHHhcCCCCEEEECcccCCCCCCCCcEEEEEcCCCCcc
Confidence 47888 79999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeCC---CCCCccCCCCCeeecCChhHHHHHHHhCCCCeEEeccCCCHHHHHHhhcc-CCccEEeeecccccccCCC
Q 026500 83 DAFISLS---AASLAELPAGSIVGTASLRRKSQILHRYPSLKVMENFRGNVQTRLRKLNE-RVVQATLLALAGLKRLSMT 158 (237)
Q Consensus 83 D~LV~~~---~~~l~~Lp~ga~IGTSS~RR~aql~~~~pdl~v~~~iRGNV~TRL~KL~~-ge~DaiILA~AGL~RLgl~ 158 (237)
|+||+++ +.+|++||+|++|||||+||++||+++|||++|+ ++||||+|||+||++ |+|||||||+|||+|||+.
T Consensus 124 DalV~~~~~~~~~l~~LP~Ga~VGTSSlRR~aQL~~~rPdL~i~-~lRGNV~TRL~KL~~gg~~DAiILA~AGL~RLgl~ 202 (364)
T 3ecr_A 124 DAVVFHPKFVGKTLETLPEKSVVGTSSLRRAAQLQRKFPHLEFR-SIRGNLNTRLRKLDEQQEFSAIILATAGLQRMGWH 202 (364)
T ss_dssp EEEEECTTCTTCCTTTSCTTCEEECCCHHHHHHHHHHCTTSEEE-CCCSCHHHHHHHHHHSSSCSEEEEEHHHHHHTTCG
T ss_pred eEEEEcCccCCCChhHCCCcCEEeCCcHHHHHHHHHHCCCCEEE-ECCCCHHHHHHHhhcCCCcCEEEehhhHHhhcCCc
Confidence 9999985 6789999999999999999999999999999999 999999999999999 5999999999999999999
Q ss_pred CcceeeecCCCCCCCCCCceEEEEEecCchhhhhhhcccccccccccccccchhHHHHHHHHhhhh
Q 026500 159 ENVTNILSVDDMLPAVAQGAIGIACRSNDEKMVPFTTHSQASILNTFNCSGKLCYKLHFGFLNLVE 224 (237)
Q Consensus 159 ~~i~~~l~~~~~lPA~GQGalave~R~~d~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~ 224 (237)
++++++|++++|+|||||||||||||++|.++.++|+.++ +=.+..|+..||.||+.|+
T Consensus 203 ~~i~~~l~~~~~lPA~gQGaLaIe~R~~D~~~~~ll~~l~-------d~~T~~~v~AERa~l~~L~ 261 (364)
T 3ecr_A 203 NRVGQILHPEECMYAVGQGALGVEVRAKDQDILDLVGVLH-------DPETLLRCIAERAFLRHLE 261 (364)
T ss_dssp GGCCEECCTTTCCBCTTTTCEEEEEETTCHHHHHHHHTTC-------CHHHHHHHHHHHHHHHHHC
T ss_pred hheeEecChhhcCCccccceeEEEEecCCHHHHHHHHHcC-------CHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999998877 4347889999999999887
No 3
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0
Probab=96.85 E-value=0.0028 Score=51.19 Aligned_cols=107 Identities=20% Similarity=0.273 Sum_probs=70.9
Q ss_pred HHHHHHHhcCCccEEEeeCCCCCCCCCCCceeeeecCCCCCCeEEEeCCC---CCCccCCCCCeeecCChhH-HHHHHHh
Q 026500 41 KEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLSA---ASLAELPAGSIVGTASLRR-KSQILHR 116 (237)
Q Consensus 41 keLe~aLl~g~iDiAVHSlKDlP~~l~~gL~iaav~~R~dprD~LV~~~~---~~l~~Lp~ga~IGTSS~RR-~aql~~~ 116 (237)
.++.++|.+|++|+++-++-.-|. ..+.+.+.. +=-...-+++.+++ .++++| .|.+||+..--- ...+...
T Consensus 53 ~~~~~~l~~g~~D~~~~~~~~~~~-r~~~~~fs~--p~~~~~~~~~~~~~~~~~~~~dL-~g~~i~~~~g~~~~~~~~~~ 128 (237)
T 3kzg_A 53 DDLFPALKNREVDLVIASMIITDE-RKKHFIFSL--PYMESNSQYITTVDSKISTFDDL-HGKKIGVRKGTPYARQVLSE 128 (237)
T ss_dssp GGHHHHHHTTSSSEECSSCBCCTT-GGGTCEECC--CSBCCEEEEEEETTCSCCSGGGG-TTCEEEEETTSTHHHHHHHT
T ss_pred HHHHHHHhCCCCCEEEEccccChh-Hhccceeee--eeeecceEEEEECCCCCCCHHHh-CCCEEEEecCCHHHHHHHHh
Confidence 467789999999998865533332 122222221 11122345665544 456777 478888754443 5677888
Q ss_pred CCCCeEEeccCCCHHHHHHhhccCCccEEeeeccccc
Q 026500 117 YPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLK 153 (237)
Q Consensus 117 ~pdl~v~~~iRGNV~TRL~KL~~ge~DaiILA~AGL~ 153 (237)
+|+.+++ .. .+.++-++.|.+|++||++....-+.
T Consensus 129 ~~~~~~~-~~-~~~~~~~~~l~~G~vDa~~~~~~~~~ 163 (237)
T 3kzg_A 129 NRNNQVI-FY-ELIQDMLLGLSNNQVDASLMDYEAAK 163 (237)
T ss_dssp CSSCEEE-EE-SSHHHHHHHHHTTSSSEEEEEHHHHH
T ss_pred CCCCcEE-Ee-CCHHHHHHHHHcCCCCEEEeCcHHHH
Confidence 9999988 54 57899999999999999999766443
No 4
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A*
Probab=96.54 E-value=0.007 Score=49.15 Aligned_cols=149 Identities=11% Similarity=0.074 Sum_probs=84.7
Q ss_pred HHHHHHHhcCCccEEEeeCCCCCCCCCCCceeeeecCCCCCCeEEEeCCC----CCCccCCCCCeeecCChhHHHHHHHh
Q 026500 41 KEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLSA----ASLAELPAGSIVGTASLRRKSQILHR 116 (237)
Q Consensus 41 keLe~aLl~g~iDiAVHSlKDlP~~l~~gL~iaav~~R~dprD~LV~~~~----~~l~~Lp~ga~IGTSS~RR~aql~~~ 116 (237)
.++-++|.+|++|+++.++-.-|. ..+.+.+..+. ......+++.+++ ++++|| .|.+||+..---.......
T Consensus 80 ~~~~~~l~~g~~D~~~~~~~~~~~-r~~~~~~~p~~-~~~~~~~~~~~~~~~~i~~~~dL-~g~~i~~~~g~~~~~~l~~ 156 (268)
T 3qax_A 80 DALILNLKKHRIDAILAGMSITPS-RQKEIALLPYY-GDEVQELMVVSKRSLETPVLPLT-QYSSVAVQTGTYQEHYLLS 156 (268)
T ss_dssp GGHHHHHHHTSSSEECSCCBCCHH-HHTTSEEEEEE-CCCBCEEEEEEETTSCSCCCCGG-GSSCEEEETTSHHHHHHHT
T ss_pred HHHHHHHhCCCccEEeecCccCHh-Hhcceeeecce-ecccceEEEEECCCCCCCCHHHh-CCCEEEEecCcHHHHHHHh
Confidence 456688999999999864432221 12223331121 1133445565433 456777 4778887554444555555
Q ss_pred CCCCeEEeccCCCHHHHHHhhccCCccEEeeecccccccCCCCcceeeecCCCCCCCCCCceEEEEEecCchhhhhhhc
Q 026500 117 YPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPAVAQGAIGIACRSNDEKMVPFTT 195 (237)
Q Consensus 117 ~pdl~v~~~iRGNV~TRL~KL~~ge~DaiILA~AGL~RLgl~~~i~~~l~~~~~lPA~GQGalave~R~~d~~~~~~l~ 195 (237)
.|+.+++ ... +.+.-++.|.+|++||++....-+..+--+......+.. .+.+.+-.--+++-++++++++.+.+.
T Consensus 157 ~~~~~~~-~~~-~~~~~~~~l~~G~vDa~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~k~~~~l~~~l~ 232 (268)
T 3qax_A 157 QPGICVR-SFD-STLEVIMEVRYGKSPVAVLEPSVGRVVLKDFPNLVATRL-ELPPECWVLGCGLGVAKDRPEEIQTIQ 232 (268)
T ss_dssp STTCCEE-EES-CHHHHHHHHHTTSSSEEEECHHHHHHHGGGCTTEEEEEE-ECCGGGCBCCEEEEECTTCHHHHHHHH
T ss_pred CCCceEE-ecC-CHHHHHHHHHcCCCCEEEecHHHHHHHHHhCCCcEEecC-ccCcccccccEEEEEeCCCHHHHHHHH
Confidence 8899988 554 789999999999999999865543333111111122221 111111001167888888877666654
No 5
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0
Probab=96.53 E-value=0.0043 Score=49.91 Aligned_cols=149 Identities=11% Similarity=0.086 Sum_probs=83.6
Q ss_pred HHHHHHHhcCCccEEEeeCCCCCCCCCCCceeeeecCCCCCCeEEEeCCC---CCCccCCCCCeeecCChhHHHHHHHhC
Q 026500 41 KEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLSA---ASLAELPAGSIVGTASLRRKSQILHRY 117 (237)
Q Consensus 41 keLe~aLl~g~iDiAVHSlKDlP~~l~~gL~iaav~~R~dprD~LV~~~~---~~l~~Lp~ga~IGTSS~RR~aql~~~~ 117 (237)
.++.++|.+|++|+++.++-.-|. ....+.+..+. ......+++.+++ .++++| .|.+||+.+---.......+
T Consensus 60 ~~~~~~l~~g~~D~~~~~~~~~~~-r~~~~~~~p~~-~~~~~~~~~~~~~~~i~~~~dL-~g~~i~v~~g~~~~~~l~~~ 136 (242)
T 3del_B 60 DALILNLKQHRIDAVITGMSITPS-RLKEILMIPYY-GEEIKHLVLVFKGENKHPLPLT-QYRSVAVQTGTYQEAYLQSL 136 (242)
T ss_dssp GGHHHHHHTTSSSEECSSBBCCHH-HHTTEEEEEEE-EEEESEEEEEEESCCSCCCCGG-GSSCEEEETTSHHHHHHHHS
T ss_pred HHHHHHHhCCCcCEEEecCcCCHH-HHhcccceeee-ecCCceEEEEeCCCCCCCHHHh-CCCEEEEEcCcHHHHHHHhC
Confidence 356688999999999754433221 11222221111 0022345555533 456777 47778775443344444448
Q ss_pred CCCeEEeccCCCHHHHHHhhccCCccEEeeecccccccCCCCcceeeecCCCCCCCCCCceEEEEEecCchhhhhhhc
Q 026500 118 PSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPAVAQGAIGIACRSNDEKMVPFTT 195 (237)
Q Consensus 118 pdl~v~~~iRGNV~TRL~KL~~ge~DaiILA~AGL~RLgl~~~i~~~l~~~~~lPA~GQGalave~R~~d~~~~~~l~ 195 (237)
|+.+++ ... |.+.-++.|.+|++||++....-+..+--......++.. .+.+.+-.--+++-++++++++.+.+.
T Consensus 137 ~~~~~~-~~~-~~~~~~~~L~~g~vDa~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~k~~~~l~~~l~ 211 (242)
T 3del_B 137 SEVHIR-SFD-STLEVLMEVMHGKSPVAVLEPSIAQVVLKDFPALSTATI-DLPEDQWVLGYGIGVASDRPALALKIE 211 (242)
T ss_dssp TTCCEE-EES-SHHHHHHHHHTTSSSEEEECHHHHHHHGGGCTTEEEEEE-ECCGGGCEEEEEEEEETTCHHHHHHHH
T ss_pred CCceEE-EEC-CHHHHHHHHHcCCCCEEEecHHHHHHHHHhCCCeEEecC-ccCcccccceEEEEEeCCCHHHHHHHH
Confidence 999998 654 899999999999999999966544433111111122221 111111001167888888877766664
No 6
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0
Probab=96.29 E-value=0.0083 Score=47.15 Aligned_cols=147 Identities=14% Similarity=0.114 Sum_probs=83.7
Q ss_pred HHHHHHHhcCCccEEEeeCCCCCCCCCCCceeeeecCCCCCCeEEEeCCC----CCCccCCCCCeeecCChhH-HHHHHH
Q 026500 41 KEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLSA----ASLAELPAGSIVGTASLRR-KSQILH 115 (237)
Q Consensus 41 keLe~aLl~g~iDiAVHSlKDlP~~l~~gL~iaav~~R~dprD~LV~~~~----~~l~~Lp~ga~IGTSS~RR-~aql~~ 115 (237)
+++.++|.+|++|+++-++-.-| +..+.+.+.. + =-....+++++++ .++++| .|.+||+..--- ...+..
T Consensus 51 ~~~~~~l~~g~~D~~~~~~~~~~-~r~~~~~~s~-p-~~~~~~~l~~~~~~~~~~~~~dL-~g~~v~~~~g~~~~~~l~~ 126 (227)
T 3tql_A 51 DSLIPSLKLGKFDALFGGMNITT-ARQKEVDFTD-P-YYTNSVSFIADKNTPLTLSKQGL-KGKIIGVQGGTTFDSYLQD 126 (227)
T ss_dssp HHHHHHHHHTSCSEECSSCBCCT-TGGGTEEECS-C-SBCCEEEEEEETTSCCCCSTTTT-TTCEEEEETTSHHHHHHHH
T ss_pred HHHHHHHhCCCCCEEEecCcCCH-hHHhheeccc-c-eeccceEEEEeCCCCCCCCHHHh-CCCEEEEEecccHHHHHHH
Confidence 46778999999999875432111 2222232221 1 1122456666543 467777 577887743322 456666
Q ss_pred hCCC-CeEEeccCCCHHHHHHhhccCCccEEeeeccccc----ccCCCCcceeeecCCCCCCCCCCceEEEEEecCchhh
Q 026500 116 RYPS-LKVMENFRGNVQTRLRKLNERVVQATLLALAGLK----RLSMTENVTNILSVDDMLPAVAQGAIGIACRSNDEKM 190 (237)
Q Consensus 116 ~~pd-l~v~~~iRGNV~TRL~KL~~ge~DaiILA~AGL~----RLgl~~~i~~~l~~~~~lPA~GQGalave~R~~d~~~ 190 (237)
..|+ .+++ .. .+.+.-++.|.+|++||++....-+. +.+.. .+ ..+.+....+..-..-+++-++++++++
T Consensus 127 ~~~~~~~~~-~~-~~~~~~~~~l~~grvDa~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l 202 (227)
T 3tql_A 127 SFGNSITIQ-RY-PSEEDALMDLTSGRVDAVVGDTPLIKQWLKQNGRR-EY-VLIGKPVNDPNYFGKGVGIAVKKGNQAL 202 (227)
T ss_dssp HHGGGSEEE-EE-SSHHHHHHHHTTTSSSEEESCHHHHHHHHHHTTCC-SE-EEEEEECCCGGGCCSCBCCEEETTCHHH
T ss_pred hccccceEE-Ec-CCHHHHHHHHHcCCcCEEEeChHHHHHHHHhCCCC-CE-EEecCcccCccccccceEEEEcCCCHHH
Confidence 7777 8887 54 47899999999999999998665433 32221 11 1121111111111123456778887766
Q ss_pred hhhhc
Q 026500 191 VPFTT 195 (237)
Q Consensus 191 ~~~l~ 195 (237)
.+.+.
T Consensus 203 ~~~l~ 207 (227)
T 3tql_A 203 LLKLN 207 (227)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66554
No 7
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp}
Probab=95.97 E-value=0.036 Score=43.75 Aligned_cols=149 Identities=12% Similarity=0.201 Sum_probs=83.3
Q ss_pred HHHHHHHhcCCccEEEeeCCCCCCCCCCCceeeeecCCCCCCeEEEeCCC--CCCccCCCCCeeecCChhH-HHHHHHhC
Q 026500 41 KEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLSA--ASLAELPAGSIVGTASLRR-KSQILHRY 117 (237)
Q Consensus 41 keLe~aLl~g~iDiAVHSlKDlP~~l~~gL~iaav~~R~dprD~LV~~~~--~~l~~Lp~ga~IGTSS~RR-~aql~~~~ 117 (237)
.++.++|.+|++|+++.++-.-| +..+.+.+.. +--.....+++++++ .++++| .|.+||+..--- ...+...+
T Consensus 55 ~~~~~~l~~g~~D~~~~~~~~~~-~r~~~~~~s~-p~~~~~~~~~~~~~~~~~~~~dL-~g~~v~~~~g~~~~~~l~~~~ 131 (229)
T 2y7i_A 55 DSLIPSLRFKKFDAVIAGMDMTP-KREQQVSFSQ-PYYEGLSAVVVTRKGAYHTFADL-KGKKVGLENGTTHQRYLQDKQ 131 (229)
T ss_dssp GGHHHHHHTTSCSEECSSCBCCH-HHHTTSEECS-CSBCCCCEEEEEETTSCCSTGGG-TTCEEEEETTSHHHHHHHHHC
T ss_pred HHHHHHHhCCCceEEEecCccCH-HHhcceeecc-ccccCCcEEEEEeCCCCCCHHHH-CCCEEEEecCCcHHHHHHHhC
Confidence 46778999999999985432111 1112332221 111121446666543 457777 588888643322 44566778
Q ss_pred CCCeEEeccCCCHHHHHHhhccCCccEEeeecccccccCCC-CcceeeecCCCCCCCCCCceEEEEEecCchhhhhhhc
Q 026500 118 PSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMT-ENVTNILSVDDMLPAVAQGAIGIACRSNDEKMVPFTT 195 (237)
Q Consensus 118 pdl~v~~~iRGNV~TRL~KL~~ge~DaiILA~AGL~RLgl~-~~i~~~l~~~~~lPA~GQGalave~R~~d~~~~~~l~ 195 (237)
|+.+++ .. .+.++-++.|.+|++||++....-+..+--. ..+ .++.+...-|..-..-+++-++++++++.+.+.
T Consensus 132 ~~~~~~-~~-~~~~~~~~~l~~grvDa~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 207 (229)
T 2y7i_A 132 QAITPV-AY-DSYLNAFTDLKNNRLEGVFGDVAAIGKWLKNNPDY-AIMDERASDPDYYGKGLGIAVRKDNDALLQEIN 207 (229)
T ss_dssp TTSEEE-EE-SCHHHHHHHHHTTSCSEEEEEHHHHHHHHTTCTTE-EECSCCBCCTTTSCCCBCCEECTTCHHHHHHHH
T ss_pred CCCeEE-ec-CCHHHHHHHHHcCCcCEEEechHHHHHHHHhCCCe-EEeccccccccccccceEEEEeCCCHHHHHHHH
Confidence 999988 55 4789999999999999999866543322111 112 223221111111012345567777766655554
No 8
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0
Probab=95.82 E-value=0.012 Score=47.53 Aligned_cols=143 Identities=10% Similarity=0.076 Sum_probs=84.0
Q ss_pred HHHHHHHhcCCccEEEeeCCCCCCCCCCCceeeeecCCCCCCeEEEeCCC-----CCCccCCC-CCeeecCChhH-HHHH
Q 026500 41 KEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLSA-----ASLAELPA-GSIVGTASLRR-KSQI 113 (237)
Q Consensus 41 keLe~aLl~g~iDiAVHSlKDlP~~l~~gL~iaav~~R~dprD~LV~~~~-----~~l~~Lp~-ga~IGTSS~RR-~aql 113 (237)
+++-++|.+|++|+++-++-.-|. ....+.+.. +=-....+++++++ .++++|.. |.+||+..--- ...+
T Consensus 54 ~~~~~~l~~g~~D~~~~~~~~t~~-r~~~~~~s~--p~~~~~~~~~~~~~~~~~i~~~~dL~~~g~~i~v~~g~~~~~~l 130 (245)
T 3k4u_A 54 DGLIPGLVTEKFDIIISGMTISQE-RNLRVNFVE--PYIVVGQSLLVKKGLEKGVKSYKDLDKPELTLVTKFGVSAEYAA 130 (245)
T ss_dssp GGHHHHHHTTSCSEECSSCBCCHH-HHTTSEECS--CSEEECEEEEEETTTTTTCCSGGGGCCSSCEEEEETTSHHHHHH
T ss_pred HHHHHHHhCCCcCEEEecCcCCHH-HHhhcCcch--hhheeceEEEEECCcccccCCHHHhccCCcEEEEeCCcHHHHHH
Confidence 456688999999998765432221 111222211 11112235555443 45778853 77888644333 3456
Q ss_pred HHhCCCCeEEeccCCCHHHHHHhhccCCccEEeeecccc----cccCCCCcceeeecCCCCCCCCCCceEEEEEecCchh
Q 026500 114 LHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGL----KRLSMTENVTNILSVDDMLPAVAQGAIGIACRSNDEK 189 (237)
Q Consensus 114 ~~~~pdl~v~~~iRGNV~TRL~KL~~ge~DaiILA~AGL----~RLgl~~~i~~~l~~~~~lPA~GQGalave~R~~d~~ 189 (237)
...+|+.+++ ... |.+.-++.|.+|++||++....-+ .+.+. ..+ ..+.. ....--+++-+++++++
T Consensus 131 ~~~~~~~~~~-~~~-~~~~~~~~L~~GrvDa~i~~~~~~~~~~~~~~~-~~~-~~~~~-----~~~~~~~~~~~~k~~~~ 201 (245)
T 3k4u_A 131 KRLFKNAKLK-TYD-TEAEAVQEVLNGKADMFIFDLPFNVAFMAQKGQ-GYL-VHLDT-----SLTYEPLGWAIKKGDPD 201 (245)
T ss_dssp HHHCSSSEEE-EES-SHHHHHHHHHSSSSEEEEEEHHHHHHHHHHTTT-TTE-EEECC-----CCSCEEECCEECTTCHH
T ss_pred HhhCCcCCEE-EeC-CHHHHHHHHHcCCCcEEEEcHHHHHHHHhcCCc-cce-eecCC-----CcccccEEEEEcCCCHH
Confidence 6678999998 665 788899999999999999875433 33331 121 22221 11234466778888876
Q ss_pred hhhhhc
Q 026500 190 MVPFTT 195 (237)
Q Consensus 190 ~~~~l~ 195 (237)
+.+.+.
T Consensus 202 l~~~ln 207 (245)
T 3k4u_A 202 FLNWLN 207 (245)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665554
No 9
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A
Probab=95.40 E-value=0.021 Score=44.79 Aligned_cols=142 Identities=13% Similarity=0.102 Sum_probs=82.3
Q ss_pred HHHHHHHhcCCccEEEeeCCCCCCCCCCCceeeeecCCCCCCeEEEeCCC----CCCccCCCCCeeecCChh-HHHHHHH
Q 026500 41 KEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLSA----ASLAELPAGSIVGTASLR-RKSQILH 115 (237)
Q Consensus 41 keLe~aLl~g~iDiAVHSlKDlP~~l~~gL~iaav~~R~dprD~LV~~~~----~~l~~Lp~ga~IGTSS~R-R~aql~~ 115 (237)
+++.++|.+|++|+++.++-.-|. ..+.+.+.. +=-....+++++++ .++++| .|.+||+.+-- -...+..
T Consensus 51 ~~~~~~l~~g~~D~~~~~~~~~~~-r~~~~~~~~--p~~~~~~~~~~~~~~~~i~~~~dL-~g~~i~~~~g~~~~~~l~~ 126 (226)
T 1wdn_A 51 SGIIPALQTKNVDLALAGITITDE-RKKAIDFSD--GYYKSGLLVMVKANNNDVKSVKDL-DGKVVAVKSGTGSVDYAKA 126 (226)
T ss_dssp GGHHHHHHTTSSSEEEEEEECCHH-HHTTSEECS--CCEEEEEEEEEETTCCSCSSSTTT-TTCEEEEETTSHHHHHHHH
T ss_pred HHHHHHHhCCCCCEEEEcCcCCHH-HhCcccccc--chhcCceEEEEeCCCCCCCCHHHh-CCCEEEEEcCCcHHHHHHH
Confidence 467789999999999865432221 112222211 00011234554433 357777 57888863322 2345666
Q ss_pred hCCCCeEEeccCCCHHHHHHhhccCCccEEeeeccccc----ccCCCCcceeeecCCCCCCCCCCceEEEEEecCchhhh
Q 026500 116 RYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLK----RLSMTENVTNILSVDDMLPAVAQGAIGIACRSNDEKMV 191 (237)
Q Consensus 116 ~~pdl~v~~~iRGNV~TRL~KL~~ge~DaiILA~AGL~----RLgl~~~i~~~l~~~~~lPA~GQGalave~R~~d~~~~ 191 (237)
.+|+.+++ .. .+.++-++.|.+|++|+++....-+. ..+. ..+ .++++ .....-+++-++++++++.
T Consensus 127 ~~~~~~~~-~~-~~~~~~~~~l~~g~vDa~~~~~~~~~~~~~~~~~-~~l-~~~~~-----~~~~~~~~~~~~k~~~~l~ 197 (226)
T 1wdn_A 127 NIKTKDLR-QF-PNIDNAYMELGTNRADAVLHDTPNILYFIKTAGN-GQF-KAVGD-----SLEAQQYGIAFPKGSDELR 197 (226)
T ss_dssp HCCCSEEE-EE-SSHHHHHHHHHTTSCSEEEEEHHHHHHHHHTTTT-TTE-EEEEE-----EEEEEEEEEEECTTCHHHH
T ss_pred hCCCceEE-Ee-CCHHHHHHHHHcCCcCEEEeCcHHHHHHHHhCCC-Cce-EEecC-----CcccCceEEEEeCCCHHHH
Confidence 67899887 54 47899999999999999998665433 2332 122 12211 1123456788888876655
Q ss_pred hhhc
Q 026500 192 PFTT 195 (237)
Q Consensus 192 ~~l~ 195 (237)
+.+.
T Consensus 198 ~~~~ 201 (226)
T 1wdn_A 198 DKVN 201 (226)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 10
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp}
Probab=95.35 E-value=0.012 Score=51.50 Aligned_cols=105 Identities=9% Similarity=-0.038 Sum_probs=64.1
Q ss_pred HHHHHHHhcCCccEEEeeCCCCCCC--CCCCceeeeecCCCCCCeEEEeCCC---CCCccCCCCCeeecCC---hhH-H-
Q 026500 41 KEIDEALINSQIDIAVHSMKDVPTY--LPEKTILPCNLQREDVRDAFISLSA---ASLAELPAGSIVGTAS---LRR-K- 110 (237)
Q Consensus 41 keLe~aLl~g~iDiAVHSlKDlP~~--l~~gL~iaav~~R~dprD~LV~~~~---~~l~~Lp~ga~IGTSS---~RR-~- 110 (237)
.++-++|.+|++|+++-++--.-.. ....+.+.+... ....+++++++ ++++||++|.+||+++ ... .
T Consensus 93 ~~~~~al~~G~~D~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~~ivv~~~s~I~s~~DL~kGk~i~v~~~~s~~~~~~ 170 (341)
T 3un6_A 93 PDLMDALNSGRIDGASTLIELAMKSKQKGSNIKAVALGH--HEGNVIMGQKGMHLNEFNNNGDDYHFGIPHRYSTHYLLL 170 (341)
T ss_dssp HHHHHHHHTTSSSEEEEEHHHHHHHHHTTCCCEEEEESC--EECEEEEESTTCCGGGCCSSSSCEEEEESCSSSHHHHHH
T ss_pred HHHHHHHHcCCCCEEecchHHHHHHHHCCCCeEEEeecC--CCceEEEEcCCCCCCCHHHhCCCCEEEECCCCCHHHHHH
Confidence 4677899999999998754111000 111244445432 22455666653 5688998999998653 222 1
Q ss_pred -HHHHHhC---CCCeEEeccCCCHHHHHHhhccCCccEEeeecc
Q 026500 111 -SQILHRY---PSLKVMENFRGNVQTRLRKLNERVVQATLLALA 150 (237)
Q Consensus 111 -aql~~~~---pdl~v~~~iRGNV~TRL~KL~~ge~DaiILA~A 150 (237)
..|+..- .|++++ .+ +....+.-|.+|++||.++...
T Consensus 171 ~~~l~~~Gl~~~dv~~~-~~--~~~~~~~al~~G~vDa~~~~~p 211 (341)
T 3un6_A 171 EELRKQLKIKPGHFSYH-EM--SPAEMPAALSEHRITGYSVAEP 211 (341)
T ss_dssp HHHHHHTTCCTTSEEEE-EC--CGGGHHHHHHTTSCSEEEEETT
T ss_pred HHHHHHcCCCHHHeEEE-Ec--ChHHHHHHHHcCCCCEEEecCC
Confidence 1233221 267777 66 3456778889999999988543
No 11
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=94.99 E-value=0.078 Score=44.71 Aligned_cols=145 Identities=12% Similarity=0.088 Sum_probs=83.7
Q ss_pred HHHHHHHhcCCccEEEeeCCCCCCCCCCCceeeeecCCCCCCeEEEeCCC---CCCccCCCCCeeecCChh-HHHHHHHh
Q 026500 41 KEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLSA---ASLAELPAGSIVGTASLR-RKSQILHR 116 (237)
Q Consensus 41 keLe~aLl~g~iDiAVHSlKDlP~~l~~gL~iaav~~R~dprD~LV~~~~---~~l~~Lp~ga~IGTSS~R-R~aql~~~ 116 (237)
.++.++|.+|++|+++-++-.-| +....+.+... - .....+++++++ ++++|| .|.+||+..-- =...+...
T Consensus 107 ~~~~~~l~~G~~D~~~~~~~~~~-~r~~~~~~~~p-~-~~~~~~l~~~~~~~i~sl~dL-~gk~v~~~~g~~~~~~l~~~ 182 (291)
T 2yjp_A 107 ANRVEYVRSGKVDLILANFTQTP-ERAEAVDFADP-Y-MKVALGVVSPKNKPITDMAQL-KDQTLLVNKGTTADAFFTKS 182 (291)
T ss_dssp GGHHHHHHTTSCSEECSSCBCCH-HHHTTEEECCC-C-EEECEEEEEETTSCCCSGGGG-TTSEEEEETTSHHHHHHHHH
T ss_pred HHHHHHHhCCCeeEEEeCCCCCh-HHHccceeccC-e-eecceEEEEeCCCCCCCHHHh-CCCEEEEecCCcHHHHHHHh
Confidence 46788999999999985432111 11122322211 1 112345666543 567888 58888864221 13456667
Q ss_pred CCCCeEEeccCCCHHHHHHhhccCCccEEeeecccccccCCCCcceeeecCCCCCCCCCCceEEEEEecCchhhhhhhc
Q 026500 117 YPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPAVAQGAIGIACRSNDEKMVPFTT 195 (237)
Q Consensus 117 ~pdl~v~~~iRGNV~TRL~KL~~ge~DaiILA~AGL~RLgl~~~i~~~l~~~~~lPA~GQGalave~R~~d~~~~~~l~ 195 (237)
+|+.+++ ... +.+.-++.|.+|++||++....-+..+--......+++. .+ ..+..+++-++++++++.+.+.
T Consensus 183 ~~~~~~~-~~~-~~~~~~~~l~~G~vDa~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~k~~~~l~~~l~ 255 (291)
T 2yjp_A 183 HPEVKLL-KFD-QNTETFDALKDGRGVALAHDNALLWAWAKENPNFEVAIG-NL---GPAEFIAPAVQKGNADLLNWVN 255 (291)
T ss_dssp CTTSEEE-EES-SHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCTTEEEEEC-CS---SSCEEECCEEETTCHHHHHHHH
T ss_pred CCCceEE-EeC-CHHHHHHHHHcCCccEEEecHHHHHHHHHhCCCeEEcCC-cc---cCCcceEEEEeCCCHHHHHHHH
Confidence 7999988 554 889999999999999999965543322111001122221 11 1223336778888876665554
No 12
>1zbm_A Hypothetical protein AF1704; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.30A {Archaeoglobus fulgidus} SCOP: c.94.1.1
Probab=94.85 E-value=0.074 Score=44.70 Aligned_cols=100 Identities=11% Similarity=0.147 Sum_probs=63.8
Q ss_pred HHHHHHHhcCCccEEEeeCCCCCCCCCCCceeee--ecCCCCCCeEEEeCCCCCCccCCCCCeeecCChh--HHHHHHHh
Q 026500 41 KEIDEALINSQIDIAVHSMKDVPTYLPEKTILPC--NLQREDVRDAFISLSAASLAELPAGSIVGTASLR--RKSQILHR 116 (237)
Q Consensus 41 keLe~aLl~g~iDiAVHSlKDlP~~l~~gL~iaa--v~~R~dprD~LV~~~~~~l~~Lp~ga~IGTSS~R--R~aql~~~ 116 (237)
.++.++|.+|++|+++-|.=-. .....|..+.+ ..-...+..++|.++. +|| +|-+||+++.- -...++..
T Consensus 48 ~~~~~~l~~G~~D~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~vlv~~~~---~DL-kGK~Iav~~~~s~~~~ll~~~ 122 (280)
T 1zbm_A 48 ETLNRKAFNAEYEVTAISAHAY-ALLDDKYRILSAGASVGDGYGPVVVAKSE---ISL-DGKRIAVPGRYTTANLLLKLA 122 (280)
T ss_dssp HHHHHHGGGTCCSEEEEEHHHH-TTSTTTEEECSSCCEEESSCCCEEEESSC---CCC-TTCEEEESCTTSHHHHHHHHH
T ss_pred HHHHHHHHcCCCCEEEECHHHH-HHhcCCCcEEeeccccCCCeeEEEEEcCc---hhc-CCCEEEecCCCcHHHHHHHHH
Confidence 4678999999999998542111 12234555542 2122234456666543 777 68999985321 12335666
Q ss_pred CCCCeEEeccCCCHHHHHHhhccCCccEEeee
Q 026500 117 YPSLKVMENFRGNVQTRLRKLNERVVQATLLA 148 (237)
Q Consensus 117 ~pdl~v~~~iRGNV~TRL~KL~~ge~DaiILA 148 (237)
..+.+++ .+. ....+.-|.+|+.||.++.
T Consensus 123 l~~~~~~-~~~--~~~~~~al~~G~vDa~~~~ 151 (280)
T 1zbm_A 123 VEDFEPV-EMP--FDRIIQAVLDEEVDAGLLI 151 (280)
T ss_dssp CSSCEEE-ECC--GGGHHHHHHTTSSSEEEEC
T ss_pred hccCceE-ecC--HHHHHHHHHcCCCCEEEEe
Confidence 7777887 663 4678888999999998864
No 13
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa}
Probab=94.85 E-value=0.014 Score=46.74 Aligned_cols=146 Identities=8% Similarity=0.037 Sum_probs=82.2
Q ss_pred HHHHHHHhcCCccEEEeeCCCCCCCCCCCceeeeecCCCCCCeEEEeCCC-----CCCccCC-CCCeeecCCh-hHHHHH
Q 026500 41 KEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLSA-----ASLAELP-AGSIVGTASL-RRKSQI 113 (237)
Q Consensus 41 keLe~aLl~g~iDiAVHSlKDlP~~l~~gL~iaav~~R~dprD~LV~~~~-----~~l~~Lp-~ga~IGTSS~-RR~aql 113 (237)
.++.++|.+|++|+++-++-.-|. ....+.+.. +--. ...+++.+++ .++++|. +|.+||+..- --...+
T Consensus 64 ~~~~~~l~~g~~D~~~~~~~~t~~-r~~~~~fs~-p~~~-~~~~~~~~~~~~~~i~~~~dL~~~g~~v~~~~g~~~~~~l 140 (239)
T 3kbr_A 64 PNLMRDFADDRFDIAMSGISINLE-RQRQAYFSI-PYLR-DGKTPITLCSEEARFQTLEQIDQPGVTAIVNPGGTNEKFA 140 (239)
T ss_dssp TTHHHHHHTTCCSEECSSCBCCHH-HHTTCEECS-CSEE-ECEEEEEEGGGGGGGSSHHHHSSTTCEEEECTTSHHHHHH
T ss_pred HHHHHHHHCCCcCEEEeCCcCCHH-HcCccccch-HHhc-cCcEEEEECCcccccCCHHHhcCCCcEEEEcCCCcHHHHH
Confidence 356788999999999755432221 111121111 0011 1223444322 4567775 3778886332 234566
Q ss_pred HHhCCCCeEEeccCCCHHHHHHhhccCCccEEeeecccccccCCCCcceeeecCCCCCCCCCCceEEEEEecCchhhhhh
Q 026500 114 LHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPAVAQGAIGIACRSNDEKMVPF 193 (237)
Q Consensus 114 ~~~~pdl~v~~~iRGNV~TRL~KL~~ge~DaiILA~AGL~RLgl~~~i~~~l~~~~~lPA~GQGalave~R~~d~~~~~~ 193 (237)
...+|+.+++ ... +.+.-++.|.+|++||++....-+..+--+..-...+.+.. .....-+++-+++ ++++.+.
T Consensus 141 ~~~~~~~~~~-~~~-~~~~~~~~l~~grvDa~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~k-~~~l~~~ 214 (239)
T 3kbr_A 141 RANLKKARIL-VHP-DNVTIFQQIVDGKADLMMTDAIEARLQSRLHPELCAVHPQQ---PFDFAEKAYLLPR-DEAFKRY 214 (239)
T ss_dssp HHHCSSSEEE-ECC-CTTTHHHHHHTTSCSEEEEEHHHHHHHHHHCTTEEECCCC----CCCCEEECCEECS-CHHHHHH
T ss_pred HHhCCCCceE-EeC-CHHHHHHHHHcCCcCEEEEchHHHHHHHHhCCCcEEecCCC---CccccceEEEEcC-CHHHHHH
Confidence 7779999998 554 77889999999999999986654433211111112222111 1234557777888 7766665
Q ss_pred hc
Q 026500 194 TT 195 (237)
Q Consensus 194 l~ 195 (237)
+.
T Consensus 215 ln 216 (239)
T 3kbr_A 215 VD 216 (239)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 14
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0
Probab=94.80 E-value=0.084 Score=42.65 Aligned_cols=139 Identities=13% Similarity=0.119 Sum_probs=81.6
Q ss_pred HHHHHHHhcCCccEEEeeCCCCCCCCCCCceeeeecCCCCCCeEEEeCCCCCCccCCCCCeeecCChhHHHHHHHhCCCC
Q 026500 41 KEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLSAASLAELPAGSIVGTASLRRKSQILHRYPSL 120 (237)
Q Consensus 41 keLe~aLl~g~iDiAVHSlKDlP~~l~~gL~iaav~~R~dprD~LV~~~~~~l~~Lp~ga~IGTSS~RR~aql~~~~pdl 120 (237)
+++-.+|.+|++|+++-++-.-| +....+.+..-.- ....+++.+++. +++| .| +||+..---........ +.
T Consensus 54 ~~~~~~l~~g~~D~~~~~~~~t~-~r~~~~~fs~p~~--~~~~~~~~~~~~-~~dL-~g-~igv~~g~~~~~~l~~~-~~ 126 (232)
T 3i6v_A 54 DSIIPNLVSGNYDTIIAGMSITD-ERDEVIDFTQNYI--PPTASSYVATSD-GADL-SG-IVAAQTATIQAGYIAES-GA 126 (232)
T ss_dssp GGHHHHHHTTSCSEECSSCBCCH-HHHTTSEEEEEEE--CCCEEEEEESST-TCCT-TS-EEEEETTSHHHHHHHHS-SS
T ss_pred HHHHHHHHCCCCCEEEeCCcCCH-HHHhhcCcccccc--cCCeEEEEECCC-hHHh-CC-CEEEecCchHHHHHHhc-CC
Confidence 45667899999999887653322 1222333322111 123456665543 7888 46 99885544444444434 78
Q ss_pred eEEeccCCCHHHHHHhhccCCccEEeeecccc----cccCCCCcceeeecCCCCCCCCCCceEEEEEecCchhhhhhhc
Q 026500 121 KVMENFRGNVQTRLRKLNERVVQATLLALAGL----KRLSMTENVTNILSVDDMLPAVAQGAIGIACRSNDEKMVPFTT 195 (237)
Q Consensus 121 ~v~~~iRGNV~TRL~KL~~ge~DaiILA~AGL----~RLgl~~~i~~~l~~~~~lPA~GQGalave~R~~d~~~~~~l~ 195 (237)
+++ ... +.+.-++.|.+|++||++.-..-+ ++.+.. + .++.. |.....-+++-++++++++.+.+.
T Consensus 127 ~~~-~~~-~~~~~~~~L~~GrvDa~i~~~~~~~~~~~~~~~~--~-~~~~~----~~~~~~~~~~~~~k~~~~l~~~ln 196 (232)
T 3i6v_A 127 TLV-EFA-TPEETIAAVRNGEADAVFADRDYLVPIVAESGGE--L-MFVGD----DVPLGGGVGMGLRESDGELRGKFD 196 (232)
T ss_dssp EEE-EES-SHHHHHHHHHTTSSSEEEEEHHHHHHHHHHTTTS--S-EEEEE----EEECSSCEEEEECTTCHHHHHHHH
T ss_pred eEE-EeC-CHHHHHHHHHcCCcCEEEEChHHHHHHHHhCCCC--e-EEecC----CCCCCCcEEEEEeCCCHHHHHHHH
Confidence 887 554 889999999999999999865543 333321 1 11211 111223466777888877766664
No 15
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A
Probab=94.72 E-value=0.12 Score=42.74 Aligned_cols=143 Identities=13% Similarity=0.120 Sum_probs=85.3
Q ss_pred HHHHHHHhcCCccEEEeeCCCCCCCCCCCceeeeecCCCCCCeEEEeCCC----CCCccCCCCCeeecCChh-HHHHHHH
Q 026500 41 KEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLSA----ASLAELPAGSIVGTASLR-RKSQILH 115 (237)
Q Consensus 41 keLe~aLl~g~iDiAVHSlKDlP~~l~~gL~iaav~~R~dprD~LV~~~~----~~l~~Lp~ga~IGTSS~R-R~aql~~ 115 (237)
.++.++|.+|++|++. ++-.-| +....+.+.. +-- ...-+++.+++ .++++| .|.+||+..-- -...+..
T Consensus 82 ~~~~~~l~~G~~D~~~-~~~~t~-~r~~~~~fs~-p~~-~~~~~l~~~~~~~~i~~~~dL-~g~~i~v~~g~~~~~~l~~ 156 (267)
T 3mpk_A 82 EELIAKLRSGEADMAG-ALFVNS-ARESFLSFSR-PYV-RNGMVIVTRQDPDAPVDADHL-DGRTVALVRNSAAIPLLQR 156 (267)
T ss_dssp HHHHHHHHHTSCSEEE-EEECCG-GGTTTEEECS-CSE-EECEEEEEESSTTSCSSGGGC-TTCEEEEETTCTHHHHHHH
T ss_pred HHHHHHHHCCCccEEe-cccCCh-hhhcceEech-hhc-cCceEEEEECCCCCCCCHHHH-CCCEEEEeCCchhHHHHHH
Confidence 5788999999999976 332222 2223332221 111 12245555433 356777 47788764322 2346777
Q ss_pred hCCCCeEEeccCCCHHHHHHhhccCCccEEeeeccccccc---CCCCcceeeecCCCCCCCCCCceEEEEEecCchhhhh
Q 026500 116 RYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRL---SMTENVTNILSVDDMLPAVAQGAIGIACRSNDEKMVP 192 (237)
Q Consensus 116 ~~pdl~v~~~iRGNV~TRL~KL~~ge~DaiILA~AGL~RL---gl~~~i~~~l~~~~~lPA~GQGalave~R~~d~~~~~ 192 (237)
.+|+.+++ .. .|.++-++.|.+|++||+|.-..-+..+ .....+ .+..+ ++ ....-+++-++++++++.+
T Consensus 157 ~~~~~~~~-~~-~~~~~~l~~L~~GrvDa~i~~~~~~~~~~~~~~~~~l-~~~~~---~~-~~~~~~~~~~~k~~~~l~~ 229 (267)
T 3mpk_A 157 RYPQAKVV-TA-DNPSEAMLMVANGQADAVVQTQISASYYVNRYFAGKL-RIASA---LD-LPPAEIALATTRGQTELMS 229 (267)
T ss_dssp HCTTSEEE-EE-SSHHHHHHHHHHTSCSEEEEEHHHHHHHHHHHCTTTE-EEEEE---CS-SCCEEEEEEEETTCHHHHH
T ss_pred hCCCcEEE-Ee-CCHHHHHHHHHcCCCCEEEecHHHHHHHHHhcCCCce-EEEec---cC-CCceeEEEEEcCCCHHHHH
Confidence 89999998 55 5789999999999999999975543222 111111 11111 11 1235678888998887766
Q ss_pred hhc
Q 026500 193 FTT 195 (237)
Q Consensus 193 ~l~ 195 (237)
.+.
T Consensus 230 ~ln 232 (267)
T 3mpk_A 230 ILN 232 (267)
T ss_dssp HHH
T ss_pred HHH
Confidence 664
No 16
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Probab=94.70 E-value=0.045 Score=46.15 Aligned_cols=144 Identities=10% Similarity=0.073 Sum_probs=80.6
Q ss_pred HHHHHHHhcCCccEEEeeCCCCCCCCCCCceeeeecCCCCCCeEEEeCC---CCCCccCCCCCeeecCChhHHHHHHHhC
Q 026500 41 KEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLS---AASLAELPAGSIVGTASLRRKSQILHRY 117 (237)
Q Consensus 41 keLe~aLl~g~iDiAVHSlKDlP~~l~~gL~iaav~~R~dprD~LV~~~---~~~l~~Lp~ga~IGTSS~RR~aql~~~~ 117 (237)
.++.++|.+|++|+++-++-....+....+.+.. +=-...-++++++ .++++|| .|.+||+..---...+...+
T Consensus 106 ~~~~~~l~~G~~D~~~~~~~~~t~~r~~~~~~~~--p~~~~~~~l~~~~~~~i~s~~dL-~G~~v~v~~g~~~~~~l~~~ 182 (283)
T 2yln_A 106 DSMMAGLKAGRFDVVANQVGLTSPERQATFDKSE--PYSWSGAVLVAHNDSNIKSIADI-KGVKTAQSLTSNYGEKAKAA 182 (283)
T ss_dssp GGHHHHHHHTSCSEECSSCCCCSHHHHHHEEECS--CSEEECEEEEEETTCSCCSGGGC-TTSEEEECTTSHHHHHHHHT
T ss_pred HHHHHHHHCCCcCEEEecCccCChhhhcceEecc--CeeeecEEEEEECCCCCCCHHHh-CCCEEEEecCchHHHHHHHc
Confidence 4677899999999998554320011111222211 0111223555554 3578888 79999975443333333333
Q ss_pred CCCeEEeccCCCHHHHHHhhccCCccEEeeecccc----cccCCCCcceeeecCCCCCCCCCCceEEEEEecCchhhhhh
Q 026500 118 PSLKVMENFRGNVQTRLRKLNERVVQATLLALAGL----KRLSMTENVTNILSVDDMLPAVAQGAIGIACRSNDEKMVPF 193 (237)
Q Consensus 118 pdl~v~~~iRGNV~TRL~KL~~ge~DaiILA~AGL----~RLgl~~~i~~~l~~~~~lPA~GQGalave~R~~d~~~~~~ 193 (237)
+++++ .. .+...-++.|.+|++||++....-+ ++.+.. .+ .+++...+-+ ..-+++-++++++++.+.
T Consensus 183 -~~~~~-~~-~~~~~~~~~l~~g~vDa~i~~~~~~~~~~~~~~~~-~l-~~~~~~~~~~---~~~~~i~~~k~~~~l~~~ 254 (283)
T 2yln_A 183 -GAQLV-PV-DGLAQSLTLIEQKRADATLNDELAVLDYLKKNPNA-GV-KIVWSAPADE---KVGSGLIVNKGNDEAVAK 254 (283)
T ss_dssp -TCEEE-EC-SSHHHHHHHHHTTSCCEEEEEHHHHHHHHHHSTTS-SE-EEEEECCGGG---CEEECCEEESSCHHHHHH
T ss_pred -CCeEE-Ee-CCHHHHHHHHHcCCCCEEEecHHHHHHHHHhCCCC-cE-EEccCcccCC---cccEEEEEeCCCHHHHHH
Confidence 67777 55 4788999999999999999865432 333321 11 2222011110 234567778887766555
Q ss_pred hc
Q 026500 194 TT 195 (237)
Q Consensus 194 l~ 195 (237)
+.
T Consensus 255 i~ 256 (283)
T 2yln_A 255 FS 256 (283)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 17
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Probab=94.66 E-value=0.37 Score=41.32 Aligned_cols=104 Identities=12% Similarity=0.055 Sum_probs=65.1
Q ss_pred HHHHHHhcCCccEEEeeCCCCCC----CCCCCceeeeecCCCCCCeEEEeCCC---CCCccCCCCCeeecCC--hhH---
Q 026500 42 EIDEALINSQIDIAVHSMKDVPT----YLPEKTILPCNLQREDVRDAFISLSA---ASLAELPAGSIVGTAS--LRR--- 109 (237)
Q Consensus 42 eLe~aLl~g~iDiAVHSlKDlP~----~l~~gL~iaav~~R~dprD~LV~~~~---~~l~~Lp~ga~IGTSS--~RR--- 109 (237)
++-++|.+|++|+++-+. .|. .-...+.+.+.........+++++++ ++++|| .|.+||++. .-.
T Consensus 70 ~~~~al~~G~~D~~~~~~--~~~~~~~~~g~~~~~v~~~~~~~~~~~lvv~~~s~I~s~~DL-kGk~i~v~~gs~~~~~~ 146 (324)
T 3ksx_A 70 QLLEALNVGSIDLGGAGD--IPPLFAQAAGADLLYVGWVPPTPKAETILVPSKSALRTVADL-KGKRIAFQKGSSAHNLL 146 (324)
T ss_dssp HHHHHHHTTSCSEEEEES--HHHHHHHHTTCCEEEEEEECCCGGGEEEEEETTCSCCSGGGG-TTCEEEECTTSHHHHHH
T ss_pred HHHHHHHCCCCCEEeecC--HHHHHHHhcCCCEEEEEEecCCCCceEEEEeCCCCCCCHHHh-CCCEEEecCCChHHHHH
Confidence 466899999999997653 111 01224555555544444567776653 567888 588998752 111
Q ss_pred HHHHHHhC---CCCeEEeccCCCHHHHHHhhccCCccEEeeeccc
Q 026500 110 KSQILHRY---PSLKVMENFRGNVQTRLRKLNERVVQATLLALAG 151 (237)
Q Consensus 110 ~aql~~~~---pdl~v~~~iRGNV~TRL~KL~~ge~DaiILA~AG 151 (237)
...++..- .+++++ ++ +....+.-|.+|+.||+++...-
T Consensus 147 ~~~l~~~Gl~~~~v~~v-~~--~~~~~~~al~~G~vDa~~~~~p~ 188 (324)
T 3ksx_A 147 LRVLAKSGLSMRDITPL-YL--SPANARAAFAAGQVDAWAIWDPW 188 (324)
T ss_dssp HHHHHHTTCCGGGSEEE-EC--CHHHHHHHHHTTCCSEEEEETTH
T ss_pred HHHHHHcCCCHHHeEEE-eC--CHHHHHHHHHcCCCCEEEEccHH
Confidence 11222221 257777 66 57888999999999998875543
No 18
>2czl_A Hypothetical protein TTHA1568; conserved hypothetical protein, extremely thermoph bacteria, structural genomics, NPPSFA; HET: CME TLA XPE; 1.55A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 2dbp_A* 3a3u_A*
Probab=94.41 E-value=0.13 Score=42.95 Aligned_cols=101 Identities=11% Similarity=0.087 Sum_probs=63.6
Q ss_pred HHHHHHHhcCCccEEEeeCCCCCCCCCCCceeeee-c-CCCCCCeEEEeCCCCCCccCCCCCeeecCChhHH--HHHHHh
Q 026500 41 KEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCN-L-QREDVRDAFISLSAASLAELPAGSIVGTASLRRK--SQILHR 116 (237)
Q Consensus 41 keLe~aLl~g~iDiAVHSlKDlP~~l~~gL~iaav-~-~R~dprD~LV~~~~~~l~~Lp~ga~IGTSS~RR~--aql~~~ 116 (237)
.++-++|.+|++|+++-|.=-. ....+++.+.++ . .......++|+++. ++|| +|.+||+++.--. ..++.+
T Consensus 40 ~~~~~al~~G~~D~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~lv~~~~--~~dL-kGk~Ia~~~~~~~~~~ll~~l 115 (272)
T 2czl_A 40 ETLNRWALEGRLPLTKLSYAAY-AQVRDRYVALRSGGALGRGVGPLVVARGP--LQAL-EGLRVAVPGRHTTAYFLLSLY 115 (272)
T ss_dssp HHHHHHHHTTCCSEEEEEHHHH-TTCTTTEEECSSSCEEESSCCCEEEESSC--CSCC-TTCEEEESCTTSHHHHHHHHH
T ss_pred HHHHHHHHcCCCCEEEecHHHH-HhhhCceEEeecccccCCCCceEEEECCC--hHHh-CCCEEEeCCCCchHHHHHHHH
Confidence 4788999999999998654111 112233444432 0 11123445777653 7888 6899998643222 334555
Q ss_pred CCCCeEEeccCCCHHHHHHhhccCCccEEeee
Q 026500 117 YPSLKVMENFRGNVQTRLRKLNERVVQATLLA 148 (237)
Q Consensus 117 ~pdl~v~~~iRGNV~TRL~KL~~ge~DaiILA 148 (237)
....+++ .+.. ...+.-|.+|+.||.++.
T Consensus 116 l~~~~~~-~~~~--~~~~~al~~G~vDa~~~~ 144 (272)
T 2czl_A 116 AQGFVPV-EVRY--DRILPMVAQGEVEAGLII 144 (272)
T ss_dssp CSSCEEE-ECCG--GGHHHHHHTTSSSEEEEC
T ss_pred hccCcee-ecCh--HHHHHHHHCCCCCEEEEe
Confidence 5666777 6653 477888889999999985
No 19
>3qsl_A Putative exported protein; unknown, structural genomics, PSI-biology, midwest center FO structural genomics, MCSG, unknown function; HET: MSE CIT; 2.00A {Bordetella bronchiseptica}
Probab=93.79 E-value=0.088 Score=44.73 Aligned_cols=109 Identities=9% Similarity=0.031 Sum_probs=65.1
Q ss_pred HHHHHHHhcCCccEEEeeCCCCCCC--CCCCceeeeecCCCCCCeEEEeC----CCCCCccCCCCCeeecCChh---H--
Q 026500 41 KEIDEALINSQIDIAVHSMKDVPTY--LPEKTILPCNLQREDVRDAFISL----SAASLAELPAGSIVGTASLR---R-- 109 (237)
Q Consensus 41 keLe~aLl~g~iDiAVHSlKDlP~~--l~~gL~iaav~~R~dprD~LV~~----~~~~l~~Lp~ga~IGTSS~R---R-- 109 (237)
.++-++|.+|++|+++.+.-..... -...+...+..-+.+..-.++.+ ..++++|| +|.+||+++.- .
T Consensus 75 ~~~~~~l~~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~i~s~~DL-~Gk~i~~~~~gs~~~~~ 153 (346)
T 3qsl_A 75 SKALQAVVGGSADVVSGAFEHTLSLQAKGQFYRAFALQGRAPMIGVGVSKKNLPGYKGPADL-KGRKIGVTAPGSSTNMV 153 (346)
T ss_dssp HHHHHHHHTTSCSEEEEETHHHHHHHHTTCCEEEEEESBSSCCEEEEEETTTCTTCCSGGGG-TTCEEEESSTTSHHHHH
T ss_pred HHHHHHHHCCCCCEEccchHHHHHHHhCCCCeEEEEecccCCCcEEEEecCcccCCCChHHc-CCCEEEECCCCcHHHHH
Confidence 4677899999999998764222111 11234444555554443344443 23578888 58899877421 1
Q ss_pred -HHHHHHh--C-CCCeEEeccCCCHHHHHHhhccCCccEEeeecccc
Q 026500 110 -KSQILHR--Y-PSLKVMENFRGNVQTRLRKLNERVVQATLLALAGL 152 (237)
Q Consensus 110 -~aql~~~--~-pdl~v~~~iRGNV~TRL~KL~~ge~DaiILA~AGL 152 (237)
...+... . .+++++ ++.+ -...+.-|.+|+.||.++...-.
T Consensus 154 ~~~~l~~~G~~~~~v~~~-~~~~-~~~~~~al~~G~vDa~~~~~p~~ 198 (346)
T 3qsl_A 154 VNFFLAKHGLKASDVSFI-GVGA-GAGAVTALRSGQIDAISNTDPVV 198 (346)
T ss_dssp HHHHHHHTTCCGGGSEEE-ECCS-SHHHHHHHHHTSCSEEEEETTHH
T ss_pred HHHHHHHcCCCHHHeEEE-ecCC-cHHHHHHHHcCCccEEEecchhH
Confidence 1222222 1 267887 6643 35677888899999999865433
No 20
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae}
Probab=93.71 E-value=0.21 Score=39.74 Aligned_cols=144 Identities=10% Similarity=0.135 Sum_probs=78.6
Q ss_pred HHHHHHHhcCCccEEEeeCCCCCCCCCCCceeeeecCCCCCCeEEEeCC-C---CCCccCCCCCeeecCChhH----HHH
Q 026500 41 KEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLS-A---ASLAELPAGSIVGTASLRR----KSQ 112 (237)
Q Consensus 41 keLe~aLl~g~iDiAVHSlKDlP~~l~~gL~iaav~~R~dprD~LV~~~-~---~~l~~Lp~ga~IGTSS~RR----~aq 112 (237)
+++.++|.+|++|+++-++---|. ..+.+.+. .+-. ....++++++ . .++++| .|.+||+..--- -.+
T Consensus 57 ~~~~~~l~~g~~D~~~~~~~~~~~-r~~~~~~s-~p~~-~~~~~~~~~~~~~~i~~~~dL-~g~~i~~~~g~~~~~~l~~ 132 (246)
T 4eq9_A 57 SGVFAGLDADRYNMAVNNLSYTKE-RAEKYLYA-APIA-QNPNVLVVKKDDSSIKSLDDI-GGKSTEVVQATTSAKQLEA 132 (246)
T ss_dssp HHHHHHHHTTSCSEECSSCCCCHH-HHHHEEEC-CCCE-ECCEEEEEETTCCSCSSGGGC-TTCEEEECTTCHHHHHHHH
T ss_pred HHHHHHHhCCCcCEEecccccChh-hhhceeec-ccee-cCceEEEEECCCCCCCCHHHh-CCCEEEEecCccHHHHHHH
Confidence 567789999999998744221111 11111111 1111 1124455544 2 356777 477887643322 222
Q ss_pred HHHhCCC--CeEEeccCCCHHHHHHhhccCCccEEeeeccccc----ccCCCCcceeeecCCCCCCCCCCceEEEEEecC
Q 026500 113 ILHRYPS--LKVMENFRGNVQTRLRKLNERVVQATLLALAGLK----RLSMTENVTNILSVDDMLPAVAQGAIGIACRSN 186 (237)
Q Consensus 113 l~~~~pd--l~v~~~iRGNV~TRL~KL~~ge~DaiILA~AGL~----RLgl~~~i~~~l~~~~~lPA~GQGalave~R~~ 186 (237)
+...+|+ ++++ ....+.+.-++.|.+|++||++....-+. +.+.. .+ .+.... -.-+..+++-++++
T Consensus 133 ~~~~~~~~~~~~~-~~~~~~~~~~~~L~~g~vDa~~~~~~~~~~~~~~~~~~-~~-~~~~~~----~~~~~~~~~~~~k~ 205 (246)
T 4eq9_A 133 YNAEHTDNPTILN-YTKADFQQIMVRLSDGQFDYKIFDKIGVETVIKNQGLD-NL-KVIELP----SDQQPYVYPLLAQG 205 (246)
T ss_dssp HHHHCTTSCCEEE-ECCCCHHHHHHHHHTTSSSEEEEEHHHHHHHHHHHTCT-TE-EEEECC----CSSCCEECCEEETT
T ss_pred HHhhCCCcceEEE-ecCCCHHHHHHHHHcCCceEEEecHHHHHHHHHhCCCC-Cc-eEecCc----CCCCCcEEEEEcCC
Confidence 3336885 4554 44469999999999999999999765433 33332 12 122211 11122455667888
Q ss_pred chhhhhhhc
Q 026500 187 DEKMVPFTT 195 (237)
Q Consensus 187 d~~~~~~l~ 195 (237)
++++.+.+.
T Consensus 206 ~~~l~~~ln 214 (246)
T 4eq9_A 206 QDELKSFVD 214 (246)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 876665554
No 21
>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1
Probab=93.40 E-value=0.086 Score=44.13 Aligned_cols=145 Identities=13% Similarity=0.114 Sum_probs=81.6
Q ss_pred HHHHHHHhcCCccEEEeeCCCCCCCCCCCceeeeecCCCCCCeEEEeCCC---CCCccCCCCCeeecCChh-HHHHHHHh
Q 026500 41 KEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLSA---ASLAELPAGSIVGTASLR-RKSQILHR 116 (237)
Q Consensus 41 keLe~aLl~g~iDiAVHSlKDlP~~l~~gL~iaav~~R~dprD~LV~~~~---~~l~~Lp~ga~IGTSS~R-R~aql~~~ 116 (237)
.++.++|.+|++|+++-++-.-| +..+.+.+.. +- -....+++++++ .+++|| .|.+||+..-- -...+...
T Consensus 96 ~~~~~~l~~G~~D~~~~~~~~~~-~r~~~~~~s~-p~-~~~~~~~~~~~~~~i~~~~dL-~g~~i~~~~g~~~~~~l~~~ 171 (292)
T 1xt8_A 96 ANRVEFLKSNKVDIILANFTQTP-QRAEQVDFCS-PY-MKVALGVAVPKDSNITSVEDL-KDKTLLLNKGTTADAYFTQN 171 (292)
T ss_dssp GGHHHHHHTTSCSEECSSCBCCH-HHHTTEEECC-CC-EEEEEEEEEETTCCCCSSGGG-TTSEEEEETTSHHHHHHHHH
T ss_pred HHHHHHHhCCCeeEEeecCCCCc-chhcceeeec-cc-eecceEEEEECCCCCCCHHHh-CCCEEEEeCCCcHHHHHHHh
Confidence 46778899999999975432111 1122332221 10 111234555543 467787 48888864322 23456667
Q ss_pred CCCCeEEeccCCCHHHHHHhhccCCccEEeeecccccccCCCCcceeeecCCCCCCCCCCceEEEEEecCchhhhhhhc
Q 026500 117 YPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPAVAQGAIGIACRSNDEKMVPFTT 195 (237)
Q Consensus 117 ~pdl~v~~~iRGNV~TRL~KL~~ge~DaiILA~AGL~RLgl~~~i~~~l~~~~~lPA~GQGalave~R~~d~~~~~~l~ 195 (237)
+|+.+++ .. .+.+.-++.|.+|++||++....-+..+--...-..++++ .+ .-+..+++-++++++++.+.+.
T Consensus 172 ~~~~~~~-~~-~~~~~~~~~L~~G~vDa~~~~~~~~~~~~~~~~~l~~~~~-~~---~~~~~~~~~~~k~~~~l~~~l~ 244 (292)
T 1xt8_A 172 YPNIKTL-KY-DQNTETFAALMDKRGDALSHDNTLLFAWVKDHPDFKMGIK-EL---GNKDVIAPAVKKGDKELKEFID 244 (292)
T ss_dssp CTTSEEE-EE-SSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCTTEEEEEE-EE---EEEEEECCEEETTCHHHHHHHH
T ss_pred CCCceEE-Ec-CCHHHHHHHHHcCCccEEEecHHHHHHHHHhCCCeEEccc-cc---ccCceeEEEEeCCCHHHHHHHH
Confidence 8999988 55 4789999999999999999865543322100000112211 01 1122236777888776666554
No 22
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=93.36 E-value=0.057 Score=42.99 Aligned_cols=105 Identities=14% Similarity=0.172 Sum_probs=62.7
Q ss_pred HHHHHHHhcCCccEEEeeCCCCCCCCCCCceeeeecCCCCCCeEEEeCCCC----CCccCCCCCeeecCChhH-HHHHHH
Q 026500 41 KEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLSAA----SLAELPAGSIVGTASLRR-KSQILH 115 (237)
Q Consensus 41 keLe~aLl~g~iDiAVHSlKDlP~~l~~gL~iaav~~R~dprD~LV~~~~~----~l~~Lp~ga~IGTSS~RR-~aql~~ 115 (237)
+++.++|.+|++|+++-++-.-|. ..+.+.+.. +=-....+++++++. ++++| .|.+||+..--- ...+..
T Consensus 53 ~~~~~~l~~g~~D~~~~~~~~t~~-r~~~~~~s~--p~~~~~~~l~~~~~~~~~~~~~dL-~g~~v~~~~g~~~~~~l~~ 128 (239)
T 1lst_A 53 DALIPSLKAKKIDAIISSLSITDK-RQQEIAFSD--KLYAADSRLIAAKGSPIQPTLESL-KGKHVGVLQGSTQEAYAND 128 (239)
T ss_dssp GGHHHHHHTTSCSEECSSCBCCHH-HHHHCEECS--CSBCCCEEEEEETTCCCCSSHHHH-TTCEEEEETTSHHHHHHHH
T ss_pred HHHHHHHhCCCCCEEEECcCcCHH-Hhhceeecc--cceeCceEEEEeCCCCCCCCHHHh-CCCEEEEEcCccHHHHHHH
Confidence 467788999999999764322111 111121111 111133455555432 45666 577888643222 233444
Q ss_pred hC--CCCeEEeccCCCHHHHHHhhccCCccEEeeeccc
Q 026500 116 RY--PSLKVMENFRGNVQTRLRKLNERVVQATLLALAG 151 (237)
Q Consensus 116 ~~--pdl~v~~~iRGNV~TRL~KL~~ge~DaiILA~AG 151 (237)
.+ ++++++ ... +.++-++.|.+|++|+++....-
T Consensus 129 ~~~~~~~~~~-~~~-~~~~~~~~l~~G~vDa~~~~~~~ 164 (239)
T 1lst_A 129 NWRTKGVDVV-AYA-NQDLIYSDLTAGRLDAALQDEVA 164 (239)
T ss_dssp HTGGGTCEEE-EES-SHHHHHHHHHTTSCSEEEEEHHH
T ss_pred hcccCCCeEE-EcC-CHHHHHHHHHcCCCCEEEeCcHH
Confidence 44 678887 554 88999999999999999986544
No 23
>4h5g_A Amino acid ABC superfamily ATP binding cassette transporter, binding protein; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: ARG; 1.78A {Streptococcus pneumoniae} PDB: 4h5f_A*
Probab=93.34 E-value=0.15 Score=41.70 Aligned_cols=105 Identities=12% Similarity=0.149 Sum_probs=63.3
Q ss_pred HHHHHHHhcCCccEEEeeCCCCCCCCCCCceeeeecCCCCCCeEEEeCC----CCCCccCCCCCeeecCC-hhHHHHHHH
Q 026500 41 KEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLS----AASLAELPAGSIVGTAS-LRRKSQILH 115 (237)
Q Consensus 41 keLe~aLl~g~iDiAVHSlKDlP~~l~~gL~iaav~~R~dprD~LV~~~----~~~l~~Lp~ga~IGTSS-~RR~aql~~ 115 (237)
.++-.+|.+|++|+++.++-.-|. ..+-+.+. .+--..+.-+++.+. ..++.+| .|.+||+.. .--...+..
T Consensus 64 ~~~~~~l~~g~~d~~~~~~~~t~e-R~~~~~fs-~py~~~~~~~~v~~~~~~~~~~~~dl-~g~~i~v~~g~~~~~~l~~ 140 (243)
T 4h5g_A 64 DNVLTSLQTGKADLAVAGISATDE-RKEVFDFS-IPYYENKISFLVHKADVEKYKDLTSL-ESANIAAQKGTVPESMVKE 140 (243)
T ss_dssp GGHHHHHHTTSCSEECSSCBCCHH-HHTTEEEC-SCSBCCCEEEEEEGGGTTTCCSHHHH-HTSEEEEETTSHHHHHHHH
T ss_pred HHHHHHHHcCCCCcccccccCChh-HccEEEcc-CccccCcccccccccccccccccccC-CCCEEEecCCcHHHHHHHH
Confidence 356678999999999876543221 11111111 111112222233221 1234455 467776543 223566788
Q ss_pred hCCCCeEEeccCCCHHHHHHhhccCCccEEeeecc
Q 026500 116 RYPSLKVMENFRGNVQTRLRKLNERVVQATLLALA 150 (237)
Q Consensus 116 ~~pdl~v~~~iRGNV~TRL~KL~~ge~DaiILA~A 150 (237)
.+|..+++ ... |.++-++.|.+|++|+++.-..
T Consensus 141 ~~~~~~i~-~~~-~~~~~~~~l~~GrvD~~~~d~~ 173 (243)
T 4h5g_A 141 QLPKAQLT-SLT-NMGEAVNELQAGKIDAVHMDEP 173 (243)
T ss_dssp HCTTSEEE-EES-CHHHHHHHHHHTSCSEEEEEHH
T ss_pred hcccceeE-EeC-CHHHHHHHHHcCCccEEEecHH
Confidence 89999998 665 7889999999999999998543
No 24
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae}
Probab=93.31 E-value=0.22 Score=40.20 Aligned_cols=147 Identities=10% Similarity=0.115 Sum_probs=81.3
Q ss_pred HHHHHHHhcCCccEEEeeCCCCCCCCCCCceeeeecCCCCCCeEEEeCCC-----CCCccCCCCCeeecCChhH-HHHHH
Q 026500 41 KEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLSA-----ASLAELPAGSIVGTASLRR-KSQIL 114 (237)
Q Consensus 41 keLe~aLl~g~iDiAVHSlKDlP~~l~~gL~iaav~~R~dprD~LV~~~~-----~~l~~Lp~ga~IGTSS~RR-~aql~ 114 (237)
.++-++|.+|++|+++-++-.-|. ..+.+.+.. +- -....+++.+++ .+++|| .|.+||+..--- ...+.
T Consensus 91 ~~~~~~l~~g~~D~~~~~~~~~~~-r~~~~~~s~-p~-~~~~~~~~~~~~~~~~i~~~~dL-~g~~i~~~~g~~~~~~l~ 166 (269)
T 4i62_A 91 DNVLASVQSGKADLAISGVSKTDE-RSKVFDFST-PY-YTAKNKLIVKKSDLATYQSVNDL-AQKKVGAQKGSIQETMAK 166 (269)
T ss_dssp HHHHHHHHTTSCSEECSSCBCCHH-HHTTEEECS-CC-EECCEEEEEEGGGTTTCSSGGGG-C-CEEEEETTSHHHHHHH
T ss_pred HHHHHHHhCCCccEEecCCcCCHh-Hhhceeccc-ch-hhcceEEEEECCccccccCHHHh-CCCeEEEecCchHHHHHH
Confidence 567789999999998754322221 112222211 11 112234444332 457777 578888643332 45567
Q ss_pred HhCCCCeEEeccCCCHHHHHHhhccCCccEEeeecccccccCCCCcceeeecCCCCCCCCCCceEEEEEecCchhhhhhh
Q 026500 115 HRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPAVAQGAIGIACRSNDEKMVPFT 194 (237)
Q Consensus 115 ~~~pdl~v~~~iRGNV~TRL~KL~~ge~DaiILA~AGL~RLgl~~~i~~~l~~~~~lPA~GQGalave~R~~d~~~~~~l 194 (237)
..+|+.+++ ... +.++-++.|.+|++||++....-+..+-.+..-...... .+ +....--+++-++++++++.+.+
T Consensus 167 ~~~~~~~~~-~~~-~~~~~~~~l~~g~vDa~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~l~~~l 242 (269)
T 4i62_A 167 DLLQNSSLV-SLP-KNGNLITDLKSGQVDAVIFEEPVAKGFVENNPDLAIADL-NF-EKEQDDSYAVAMKKDSKELKEAV 242 (269)
T ss_dssp HHCTTSEEE-EES-CHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCTTEEECSC-CC-CC-CCCEECCEEESSCHHHHHHH
T ss_pred HhCCCCcEE-ecC-CHHHHHHHHHcCCCCEEEeChHHHHHHHHhCCCCeEEee-cc-CCCcccceEEEEeCCCHHHHHHH
Confidence 778999988 554 889999999999999999865544322111111111111 11 11112345677788877665555
Q ss_pred c
Q 026500 195 T 195 (237)
Q Consensus 195 ~ 195 (237)
.
T Consensus 243 ~ 243 (269)
T 4i62_A 243 D 243 (269)
T ss_dssp H
T ss_pred H
Confidence 4
No 25
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA; structural genomics; 2.60A {Methylobacillus flagellatus}
Probab=92.84 E-value=0.32 Score=42.38 Aligned_cols=103 Identities=15% Similarity=0.168 Sum_probs=61.8
Q ss_pred HHHHHHHhcCCccEEEeeCCCCCC----CCCCCceeeeecCCCCCCeEEEeCCC---CCCccCCCCCeeecC--ChhH--
Q 026500 41 KEIDEALINSQIDIAVHSMKDVPT----YLPEKTILPCNLQREDVRDAFISLSA---ASLAELPAGSIVGTA--SLRR-- 109 (237)
Q Consensus 41 keLe~aLl~g~iDiAVHSlKDlP~----~l~~gL~iaav~~R~dprD~LV~~~~---~~l~~Lp~ga~IGTS--S~RR-- 109 (237)
.++-++|.+|++|+++-+. .|. .--..+.+.+..-..++ ..++++++ ++++|| +|.+||++ |.--
T Consensus 58 ~~~~~al~~G~~D~~~~~~--~~~~~~~~~g~~~~~v~~~~~~~~-~~lvv~~~s~i~s~~DL-kGk~I~v~~gs~~~~~ 133 (348)
T 3uif_A 58 PVINEGFASGKIDFGIYGD--LPPIILNASKPTVQLVAPWGTTSN-SYLVVPKNSTAKSIKDL-KGKKIALHRGRPWELA 133 (348)
T ss_dssp HHHHHHHHTTCCCEEEEES--HHHHHHHHHSCCEEEEEECCCCCC-CEEEEETTCCCCSGGGG-TTSEEEECTTSTHHHH
T ss_pred HHHHHHHHcCCCCEEecCc--HHHHHHHhCCCCEEEEEeccCCCc-eEEEEECCCCCCCHHHc-CCCEEEecCCChHHHH
Confidence 3567899999999999442 121 11123444444433333 44555433 567888 58899874 2211
Q ss_pred -HHHHHHhC---CCCeEEeccCCCHHHHHHhhccCCccEEeeecc
Q 026500 110 -KSQILHRY---PSLKVMENFRGNVQTRLRKLNERVVQATLLALA 150 (237)
Q Consensus 110 -~aql~~~~---pdl~v~~~iRGNV~TRL~KL~~ge~DaiILA~A 150 (237)
...+...- .+++++ ++ +....+..|.+|+.||++....
T Consensus 134 ~~~~l~~~Gl~~~~v~~v-~~--~~~~~~~al~~G~vDa~~~~~~ 175 (348)
T 3uif_A 134 FSNLLQSEGLTFKDFKIV-NV--NPQVGAAALASGTVDGFFSLFD 175 (348)
T ss_dssp HHHHHHHTTCCGGGSEEE-CC--CHHHHHHHHHHTSSSEEEESTT
T ss_pred HHHHHHHcCCCHHHeEEE-EC--CHHHHHHHHHcCCCCEEEechH
Confidence 11222222 247777 66 4678899999999999987543
No 26
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=92.61 E-value=0.16 Score=39.71 Aligned_cols=105 Identities=10% Similarity=0.174 Sum_probs=61.3
Q ss_pred HHHHHHHHhcCCccEEEeeCCCCCCCCCCCceeeeecCCCCCCeEEEeCC-------CCCCccCCCCCeeecCChhHH-H
Q 026500 40 TKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLS-------AASLAELPAGSIVGTASLRRK-S 111 (237)
Q Consensus 40 tkeLe~aLl~g~iDiAVHSlKDlP~~l~~gL~iaav~~R~dprD~LV~~~-------~~~l~~Lp~ga~IGTSS~RR~-a 111 (237)
.+++.++|.+|++|+++-++--.|. ..+.+.+.. +=-....+++.++ ..++++| .|.+||+..---. .
T Consensus 50 ~~~~~~~l~~g~~D~~~~~~~~~~~-r~~~~~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~dL-~g~~i~~~~g~~~~~ 125 (228)
T 2pyy_A 50 VPELISAIKDNKVNLGIAAISITAE-REQNFDFSL--PIFASGLQIMVRNLESGTGDIRSIDDL-PGKVVATTAGSTAAT 125 (228)
T ss_dssp HHHHHHHHHTTSCSEECSSCBCCHH-HHHHSEECS--CSEEEEEEEEEEC-----CCCCSGGGC-TTCEEEEETTSHHHH
T ss_pred HHHHHHHHHCCCcCEEEeccccCHH-HHccceecc--cchhcceEEEEECCccccCCcCCHHHc-CCCeEEEEcCcHHHH
Confidence 3678899999999999754321111 111121110 0001122344432 2467787 5788886432222 2
Q ss_pred HHHHhCCCCeEEeccCCCHHHHHHhhccCCccEEeeecccc
Q 026500 112 QILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGL 152 (237)
Q Consensus 112 ql~~~~pdl~v~~~iRGNV~TRL~KL~~ge~DaiILA~AGL 152 (237)
.+.. ++++++ .. .+..+-++.|.+|++|+++.....+
T Consensus 126 ~l~~--~~~~~~-~~-~~~~~~~~~l~~g~~D~~~~~~~~~ 162 (228)
T 2pyy_A 126 YLRE--HHISVL-EV-PKIEEAYKALQTKKADAVVFDAPVL 162 (228)
T ss_dssp HHHH--TTCEEE-EE-SSHHHHHHHHHTTSSSEEEEEHHHH
T ss_pred HHHH--cCCceE-ec-CCHHHHHHHHHcCCCCEEEecHHHH
Confidence 3333 577776 44 5889999999999999999866543
No 27
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei}
Probab=92.51 E-value=0.26 Score=39.84 Aligned_cols=141 Identities=16% Similarity=0.150 Sum_probs=81.0
Q ss_pred HHHHHHHhcCCccEEEeeCCCCCCCCCCCceeeeecCCCCCCeEEEeCCC----CCCccCCCCCeeecCChhH-HHHHHH
Q 026500 41 KEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLSA----ASLAELPAGSIVGTASLRR-KSQILH 115 (237)
Q Consensus 41 keLe~aLl~g~iDiAVHSlKDlP~~l~~gL~iaav~~R~dprD~LV~~~~----~~l~~Lp~ga~IGTSS~RR-~aql~~ 115 (237)
.++.++|.+|++|+++-++-.-|. ..+.+.+.. +=-....+++.+++ .++++| .|.+||+..--- ...+..
T Consensus 72 ~~~~~~l~~g~~D~~~~~~~~~~~-r~~~~~~s~--p~~~~~~~~~~~~~~~~i~~~~dL-~g~~i~v~~g~~~~~~l~~ 147 (249)
T 4f3p_A 72 AGLIPALQTQNIDVALSGMTIKEE-RRKAIDFSD--PYYDSGLAAMVQANNTTIKSIDDL-NGKVIAAKTGTATIDWIKA 147 (249)
T ss_dssp GGHHHHHHTTSCSEEEEEEECCHH-HHTTEEECS--CCEEEEEEEEEETTCCSCCSSGGG-TTSEEEEETTSHHHHHHHH
T ss_pred HHHHHHHHCCCCCEEEeccccCHH-HHcCcceec--ceeeccEEEEEECCCCCcCChHHh-CCCEEEEeCCChHHHHHHh
Confidence 467788999999998754322221 111121111 00112244554432 457777 588887643333 346677
Q ss_pred hCCCCeEEeccCCCHHHHHHhhccCCccEEeeeccccc----ccCCCCcceeeecCCCCCCCCCCceEEEEEecCchhhh
Q 026500 116 RYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLK----RLSMTENVTNILSVDDMLPAVAQGAIGIACRSNDEKMV 191 (237)
Q Consensus 116 ~~pdl~v~~~iRGNV~TRL~KL~~ge~DaiILA~AGL~----RLgl~~~i~~~l~~~~~lPA~GQGalave~R~~d~~~~ 191 (237)
.+|+.+++ ... +.+.-++.|.+|++||++....-+. +.+. ..+ .+... ....--+++-++++++ +.
T Consensus 148 ~~~~~~~~-~~~-~~~~~~~~L~~GrvDa~i~~~~~~~~~~~~~~~-~~l-~~~~~-----~~~~~~~~~~~~k~~~-l~ 217 (249)
T 4f3p_A 148 HLKPKEIR-QFP-NIDQAYLALEAGRVDAAMHDTPNVLFFVNNEGK-GRV-KVAGA-----PVSGDKYGIGFPKGSP-LV 217 (249)
T ss_dssp HCCCSEEE-EES-SHHHHHHHHHTTSSSEEEEEHHHHHHHHHTTTT-TTE-EEEEE-----EEEEEEEEEEEETTCT-HH
T ss_pred cCCCceEE-EcC-CHHHHHHHHHcCCeeEEEeCcHHHHHHHHhCCC-Cce-EEecC-----CCCCccEEEEEcCCch-HH
Confidence 78999998 554 8999999999999999998765433 3332 111 11111 1122345677787765 55
Q ss_pred hhhc
Q 026500 192 PFTT 195 (237)
Q Consensus 192 ~~l~ 195 (237)
+.+.
T Consensus 218 ~~l~ 221 (249)
T 4f3p_A 218 AKVN 221 (249)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 28
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311}
Probab=92.33 E-value=0.066 Score=43.90 Aligned_cols=143 Identities=12% Similarity=0.171 Sum_probs=80.0
Q ss_pred HHHHHHHhcCCccEEEeeCCCCCCCCCCCceeeeecCCCCCCeEEEeCCC---CCCccCCCCCeeecCChhHHHHHH---
Q 026500 41 KEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLSA---ASLAELPAGSIVGTASLRRKSQIL--- 114 (237)
Q Consensus 41 keLe~aLl~g~iDiAVHSlKDlP~~l~~gL~iaav~~R~dprD~LV~~~~---~~l~~Lp~ga~IGTSS~RR~aql~--- 114 (237)
+++-++|.+|++|+++-++-.-|. ....+.+.. +=-....+++.+++ .++++| .|.+||+..---.....
T Consensus 70 ~~~~~~l~~g~~D~~~~~~~~t~~-r~~~~~fs~--p~~~~~~~~~~~~~~~i~~~~dL-~g~~i~v~~g~~~~~~l~~~ 145 (268)
T 3hv1_A 70 DMKETELKNGTIDLIWNGYSVTDE-RKQSADFTE--PYMVNEQVLVTKKSSGIDSVAGM-AGKTLGAQAGSSGYDAFNAS 145 (268)
T ss_dssp GGHHHHHHHTSCSEECSSCBCCHH-HHTTCEECC--CCEEECEEEEEEGGGCCCSSGGG-TTCCEEEETTCHHHHHHHHC
T ss_pred HHHHHHHHCCCCCEEEecCccCHH-HHhcCcCcH--HHeeCceEEEEECCCCCCCHHHh-CCCEEEEEeCCchHHHHHHh
Confidence 467788999999999854322221 112222211 00112245555433 457777 68888875444433322
Q ss_pred -----HhCCCCeEEeccCCCHHHHHHhhccCCccEEeeecccc----cccCCCCcceeeecCCCCCCCCCCceEEEEEec
Q 026500 115 -----HRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGL----KRLSMTENVTNILSVDDMLPAVAQGAIGIACRS 185 (237)
Q Consensus 115 -----~~~pdl~v~~~iRGNV~TRL~KL~~ge~DaiILA~AGL----~RLgl~~~i~~~l~~~~~lPA~GQGalave~R~ 185 (237)
..+|+.+++ .. .|.+.-++.|.+|++||++....-+ ++.+....+. ++... + ...-+++-+++
T Consensus 146 ~~~~~~~~~~~~~~-~~-~~~~~~~~~L~~GrvDa~i~~~~~~~~~~~~~~~~~~l~-~~~~~-~----~~~~~~~~~~k 217 (268)
T 3hv1_A 146 PKILKDVVANQKVV-QY-STFTQALIDLNSGRIDGLLIDRVYANYYLEKSGVLDQYN-VMPAG-Y----EGESFAVGARK 217 (268)
T ss_dssp TTTTTTTSGGGCEE-EE-SSHHHHHHHHHHTSCSEEEEEHHHHHHHHHHTTCGGGEE-EEECS-S----CCEEECCEECT
T ss_pred hHHHhhhcccceEE-Ee-CCHHHHHHHHHcCCCCEEEeCHHHHHHHHHhCCCCCceE-ECCCC-C----CCCcEEEEEcC
Confidence 234557777 44 4789999999999999999866543 3334322221 22211 1 12234556688
Q ss_pred Cchhhhhhhc
Q 026500 186 NDEKMVPFTT 195 (237)
Q Consensus 186 ~d~~~~~~l~ 195 (237)
+++++.+.+.
T Consensus 218 ~~~~l~~~ln 227 (268)
T 3hv1_A 218 VDKTLIKKIN 227 (268)
T ss_dssp TCHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 8776665554
No 29
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=92.25 E-value=0.24 Score=38.92 Aligned_cols=105 Identities=13% Similarity=0.081 Sum_probs=61.9
Q ss_pred HHHHHHHhcCCccEEEeeCCCCCCC-CCCCceeeeecCCCCCCeEEEeCC-----CCCCccCCCCCeeecCChhHHH-HH
Q 026500 41 KEIDEALINSQIDIAVHSMKDVPTY-LPEKTILPCNLQREDVRDAFISLS-----AASLAELPAGSIVGTASLRRKS-QI 113 (237)
Q Consensus 41 keLe~aLl~g~iDiAVHSlKDlP~~-l~~gL~iaav~~R~dprD~LV~~~-----~~~l~~Lp~ga~IGTSS~RR~a-ql 113 (237)
.++.++|.+|++|+++-++-.-|.. .+..+.+.. + =-...-+++.++ ..++++| .|.+||+..---.. .+
T Consensus 55 ~~~~~~l~~g~~D~~~~~~~~~~~r~~~~~~~~s~-p-~~~~~~~~~~~~~~~~~i~~~~dL-~g~~v~~~~g~~~~~~l 131 (233)
T 1ii5_A 55 SAGITAVAEGELDILIGPISVTPERAAIEGITFTQ-P-YFSSGIGLLIPGTATPLFRSVGDL-KNKEVAVVRDTTAVDWA 131 (233)
T ss_dssp HHHHHHHHTTSCSEEEEEEECCHHHHTSTTEEECC-C-CEEEEEEEEEEGGGTTTCSSGGGG-TTCEEEEETTSHHHHHH
T ss_pred HHHHHHHHCCCcCEEEeeeecCccccccceeEEcc-c-eeecCeEEEEECCCCCCCCCHHHh-CCCeEEEECCccHHHHH
Confidence 5778899999999997643211111 013333221 0 001123445442 2457777 58888864322222 33
Q ss_pred HHhCCCCeEEeccCCCHHHHHHhhccCCccEEeeecccc
Q 026500 114 LHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGL 152 (237)
Q Consensus 114 ~~~~pdl~v~~~iRGNV~TRL~KL~~ge~DaiILA~AGL 152 (237)
... +.+++ .. .+.++-++.|.+|+.||++....-+
T Consensus 132 ~~~--~~~~~-~~-~~~~~~~~~l~~g~vDa~~~~~~~~ 166 (233)
T 1ii5_A 132 NFY--QADVR-ET-NNLTAAITLLQKKQVEAVMFDRPAL 166 (233)
T ss_dssp HHT--TCEEE-EE-SSHHHHHHHHHTTSCSEEEEEHHHH
T ss_pred HHc--CCCeE-Ec-CCHHHHHHHHHcCCccEEEeCHHHH
Confidence 333 67776 44 4889999999999999999866544
No 30
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A*
Probab=92.14 E-value=0.28 Score=40.62 Aligned_cols=143 Identities=15% Similarity=0.167 Sum_probs=78.5
Q ss_pred HHHHHHHhcCCccEEEeeCCCCCCCCCCCceeeeecCCCCCCeEEEeCCC---CCCccCCCCCeeecCChhHH-HHHHH-
Q 026500 41 KEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLSA---ASLAELPAGSIVGTASLRRK-SQILH- 115 (237)
Q Consensus 41 keLe~aLl~g~iDiAVHSlKDlP~~l~~gL~iaav~~R~dprD~LV~~~~---~~l~~Lp~ga~IGTSS~RR~-aql~~- 115 (237)
.++..+|.+|++|+++-++-.-| +..+.+.+....- ....+++++++ .++++| .|.+||+.+---. ..+..
T Consensus 73 ~~~~~~l~~g~~D~~~~~~~~t~-~r~~~~~~s~p~~--~~~~~l~~~~~~~i~sl~dL-~g~~v~~~~g~~~~~~l~~~ 148 (287)
T 2vha_A 73 QNRIPLLQNGTFDFECGSTTNNV-ERQKQAAFSDTIF--VVGTRLLTKKGGDIKDFADL-KGKAVVVTSGTTSEVLLNKL 148 (287)
T ss_dssp TTHHHHHHTTSCSEECSSCBCCH-HHHTTCEEEEEEE--EEEEEEEEETTSSCCSGGGG-TTCEEEEETTSHHHHHHHHH
T ss_pred HHHHHHHHCCCeeEEeccccCCc-chhhcccccceee--ecceEEEEECCCCCCCHHHc-CCCEEEEeCCCcHHHHHHHH
Confidence 35678889999999864322111 1112232211110 11234555543 456777 4778876322111 22222
Q ss_pred ---hCCCCeEEeccCCCHHHHHHhhccCCccEEeeeccccc----ccCCCCcceeeecCCCCCCCCCCceEEEEEecCch
Q 026500 116 ---RYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLK----RLSMTENVTNILSVDDMLPAVAQGAIGIACRSNDE 188 (237)
Q Consensus 116 ---~~pdl~v~~~iRGNV~TRL~KL~~ge~DaiILA~AGL~----RLgl~~~i~~~l~~~~~lPA~GQGalave~R~~d~ 188 (237)
..++.+++ ... +.+.-++.|.+|++|+++.....+. +.+....+ ..+.. .....-+++-++++++
T Consensus 149 ~~~~~~~~~~~-~~~-~~~~~~~~L~~G~vDa~i~~~~~~~~~~~~~~~~~~~-~~~~~-----~~~~~~~~~~~~k~~~ 220 (287)
T 2vha_A 149 NEEQKMNMRII-SAK-DHGDSFRTLESGRAVAFMMDDALLAGERAKAKKPDNW-DIVGK-----PQSQEAYGCMLRKDDP 220 (287)
T ss_dssp HHHTTCCCEEE-EES-SHHHHHHHHHTTSCSEEEEEHHHHHHHHTTSSSGGGE-EEESC-----CSCEEEEEEEECTTCH
T ss_pred hhccCCCceEE-EcC-CHHHHHHHHHcCCeeEEEeChHHHHHHHHhCCCCCce-EecCC-----ccccCceEEEEeCCCH
Confidence 23688887 665 6788999999999999998655433 22221122 22221 1224456788888887
Q ss_pred hhhhhhc
Q 026500 189 KMVPFTT 195 (237)
Q Consensus 189 ~~~~~l~ 195 (237)
++.+.+.
T Consensus 221 ~l~~~l~ 227 (287)
T 2vha_A 221 QFKKLMD 227 (287)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666654
No 31
>2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A*
Probab=91.68 E-value=0.12 Score=41.90 Aligned_cols=145 Identities=15% Similarity=0.114 Sum_probs=78.6
Q ss_pred HHHHHHHhcCCccEEEeeCCCCCCCCCCCceeeeecCCCCCCeEEEeCCC-----CCCccCCC--CCeeecCChhHHH-H
Q 026500 41 KEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLSA-----ASLAELPA--GSIVGTASLRRKS-Q 112 (237)
Q Consensus 41 keLe~aLl~g~iDiAVHSlKDlP~~l~~gL~iaav~~R~dprD~LV~~~~-----~~l~~Lp~--ga~IGTSS~RR~a-q 112 (237)
.++-++|.+|++|+++-++-.-|. ..+.+.+.. +=-....+++++++ .++++|.. |.+||+..---.. .
T Consensus 62 ~~~~~~l~~g~~D~~~~~~~~t~~-r~~~~~~s~--p~~~~~~~~~~~~~~~~~i~~~~dL~~~~g~~i~~~~g~~~~~~ 138 (257)
T 2q88_A 62 GAMIPGLQAGRHDAITAGLFMKPE-RCAAVAYSQ--PILCDAEAFALKKGNPLGLKSYKDIADNPDAKIGAPGGGTEEKL 138 (257)
T ss_dssp GGHHHHHHTTSCSEECSCCBCCHH-HHTTSEECS--CCCEECEEEEEETTCTTCCCBHHHHHHCTTCCEEECTTSHHHHH
T ss_pred HHHHHHHHCCCcCEEEecccCCHH-HHhcccccc--chhcCceEEEEECCCccCCCCHHHHhccCCceEEEECCcccHHH
Confidence 456788999999999754322111 111222211 11112345665543 24556642 7888875433333 3
Q ss_pred HHHh-CCCCeEEeccCCCHHHHHHhhccCCccEEeeecccc----cccCCCCcceeeecCCCCCCCCCCceEEEEEecCc
Q 026500 113 ILHR-YPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGL----KRLSMTENVTNILSVDDMLPAVAQGAIGIACRSND 187 (237)
Q Consensus 113 l~~~-~pdl~v~~~iRGNV~TRL~KL~~ge~DaiILA~AGL----~RLgl~~~i~~~l~~~~~lPA~GQGalave~R~~d 187 (237)
+... .|+.+++ ... +.+.-++.|.+|++|+++.....+ ++.+. .. ...+.+ +...+ .--+++-+++++
T Consensus 139 l~~~~~~~~~~~-~~~-~~~~~~~~l~~grvDa~i~~~~~~~~~~~~~~~-~~-~~~~~~--~~~~~-~~~~~~~~~k~~ 211 (257)
T 2q88_A 139 ALEAGVPRDRVI-VVP-DGQSGLKMLQDGRIDVYSLPVLSINDLVSKAND-PN-VEVLAP--VEGAP-VYCDGAAFRKGD 211 (257)
T ss_dssp HHHTTCCGGGEE-ECS-SHHHHHHHHHHTSCSEEEEEHHHHHHHHHHHCC-TT-EEEECS--CBTCC-CEEBCCEECGGG
T ss_pred HHhcCCCCceEE-EcC-CHHHHHHHHHcCCCcEEEcCHHHHHHHHHhCCC-cc-eeeecc--cCCcc-ccceEEEEcCCC
Confidence 4443 5777887 555 889999999999999999865543 33333 11 222222 11111 112345667777
Q ss_pred hhhhhhhc
Q 026500 188 EKMVPFTT 195 (237)
Q Consensus 188 ~~~~~~l~ 195 (237)
+++.+.+.
T Consensus 212 ~~l~~~l~ 219 (257)
T 2q88_A 212 EALRDAFD 219 (257)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665554
No 32
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=91.62 E-value=0.18 Score=40.29 Aligned_cols=142 Identities=17% Similarity=0.200 Sum_probs=75.6
Q ss_pred HHHHHHHhcCCccEEEeeCCCCCCCCCCCceeeeecCCCCCCeEEEeCCC---CCCccCCCCCeeecC---ChhHH-HH-
Q 026500 41 KEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLSA---ASLAELPAGSIVGTA---SLRRK-SQ- 112 (237)
Q Consensus 41 keLe~aLl~g~iDiAVHSlKDlP~~l~~gL~iaav~~R~dprD~LV~~~~---~~l~~Lp~ga~IGTS---S~RR~-aq- 112 (237)
.++.++|.+|++|+++-++-.-| +..+.+.+.. +--.+ .-+++.+++ .+++|| .|.+||+. +.+.. .+
T Consensus 91 ~~~~~~l~~g~~D~~~~~~~~~~-~~~~~~~~~~-p~~~~-~~~~~~~~~~~i~~~~dL-~g~~i~~~~g~~~~~~~~~~ 166 (259)
T 2v25_A 91 KTRGPLLDNGSVDAVIATFTITP-ERKRIYNFSE-PYYQD-AIGLLVLKEKKYKSLADM-KGANIGVAQAATTKKAIGEA 166 (259)
T ss_dssp TTHHHHHHTTSCSEECSSCBCCH-HHHTTEEECS-CSEEE-EEEEEEEGGGCCCSGGGC-TTCEEEEETTCSHHHHHHHH
T ss_pred HHHHHHHhCCCCCEEEecCccCH-HHHhcCcccc-cceeC-ceEEEEeCCCCCCCHHHh-CCCEEEEecCCchHHHHHHH
Confidence 45678899999999986532111 1223333321 11111 234554432 467787 47777752 22221 11
Q ss_pred HHHhCCCCeEEeccCCCHHHHHHhhccCCccEEeeecccccccCCCCcceeeecCCCCCCCCCCceEEEEEecCchhhhh
Q 026500 113 ILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPAVAQGAIGIACRSNDEKMVP 192 (237)
Q Consensus 113 l~~~~pdl~v~~~iRGNV~TRL~KL~~ge~DaiILA~AGL~RLgl~~~i~~~l~~~~~lPA~GQGalave~R~~d~~~~~ 192 (237)
+....-+.+++ .. .+..+-++.|.+|++|+++.....+..+--... .+++ +.....-+++-++++++++.+
T Consensus 167 ~~~~g~~~~~~-~~-~~~~~~~~~l~~g~vDa~~~~~~~~~~~~~~~~--~~~~-----~~~~~~~~~~~~~k~~~~l~~ 237 (259)
T 2v25_A 167 AKKIGIDVKFS-EF-PDYPSIKAALDAKRVDAFSVDKSILLGYVDDKS--EILP-----DSFEPQSYGIVTKKDDPAFAK 237 (259)
T ss_dssp HHHTTCCCEEE-EE-SSHHHHHHHHHTTSSSEEEEEHHHHTTTCCTTE--EECS-----CCCSEEEECCEEETTCHHHHH
T ss_pred HHhcCCceeEE-Ee-CCHHHHHHHHHcCCCcEEEecHHHHHHHHHhCC--Cccc-----cccccceeEEEEcCCCHHHHH
Confidence 12222233666 44 478999999999999999986655443321111 1111 112233466777887765555
Q ss_pred hhc
Q 026500 193 FTT 195 (237)
Q Consensus 193 ~l~ 195 (237)
.+.
T Consensus 238 ~~~ 240 (259)
T 2v25_A 238 YVD 240 (259)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 33
>4gvo_A LMO2349 protein; structural genomics, IDP05245, L-cystine, ABC transporter, periplasmic binding protein, niaid; HET: HIS; 1.45A {Listeria monocytogenes} PDB: 2o1m_A
Probab=91.50 E-value=0.18 Score=41.25 Aligned_cols=143 Identities=15% Similarity=0.154 Sum_probs=71.4
Q ss_pred HHHHHHHhcCCccEEEeeCCCCCCCCCCCceeeeecCCCCCCeEEEeC----CCCCCccCCCCCeeecCChh----HHHH
Q 026500 41 KEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISL----SAASLAELPAGSIVGTASLR----RKSQ 112 (237)
Q Consensus 41 keLe~aLl~g~iDiAVHSlKDlP~~l~~gL~iaav~~R~dprD~LV~~----~~~~l~~Lp~ga~IGTSS~R----R~aq 112 (237)
+++-.+|.+|++|+++.++-.-|.- ..-+.+.. +.-....-+++.+ ...++++| .|.+||+..-- -...
T Consensus 59 ~~~~~~l~~g~~D~~~~~~~~t~eR-~~~~~fs~-p~~~~~~~~~~~~~~~~~~~~~~dL-~g~~v~v~~gs~~~~~~~~ 135 (243)
T 4gvo_A 59 SNLLVSLGAGKVDIVAHQMEKSKER-EKKFLFND-VAYNNFPLQLTVLDSNNSINSTKDL-AGKRVITSATSNGALVLKK 135 (243)
T ss_dssp GGHHHHHHTTSCSEECSCCBCCHHH-HHHSEECS-SCCEECCEEEEEETTCCSCSSGGGG-TTCEEEECTTCHHHHHHHH
T ss_pred HHHHHHHHCCCCCEecccCCCCHHH-hhhhhhhh-hhcccccceEEEeccccccCchHHh-cCCeEEEecCchHHHHHHH
Confidence 3566889999999988765322210 00000000 0000111122222 12457777 67888764321 1122
Q ss_pred HHH-hCCCCeEEeccCCCHHHHHHhhccCCccEEeeecccc----cccCCCCcceeeecCCCCCCCCCCceEEEEEecCc
Q 026500 113 ILH-RYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGL----KRLSMTENVTNILSVDDMLPAVAQGAIGIACRSND 187 (237)
Q Consensus 113 l~~-~~pdl~v~~~iRGNV~TRL~KL~~ge~DaiILA~AGL----~RLgl~~~i~~~l~~~~~lPA~GQGalave~R~~d 187 (237)
+.. ..+...+. .--.+.+.-+..|.+|++||+|.-...+ +..+....+ +. +.....-+++-+++++
T Consensus 136 ~~~~~~~~~~~~-~~~~~~~~~~~~L~~GrvDa~i~~~~~~~~~~~~~~~~~~~---~~-----~~~~~~~~~~~~~k~~ 206 (243)
T 4gvo_A 136 INEEQGNNFEIA-YEGQGSNDTANQLKTGRADATISTPFAVDFQNKTSAIKEKV---VG-----DVLSNAKVYFMLGKDE 206 (243)
T ss_dssp HHHHTTSCSEEE-ECCSGGGSHHHHHHHTSCSBEEECHHHHHHHHHTCSSCEEE---EE-----EEEECCEECCEECTTC
T ss_pred HHHhccccceec-cccCChHHHHHHHHcCCccEEEccHHHHHHHHhhCCCceEE---ec-----cCCCCCcEEEEEeCCC
Confidence 222 23444443 2234556779999999999998754433 233332221 11 1112233556678888
Q ss_pred hhhhhhhc
Q 026500 188 EKMVPFTT 195 (237)
Q Consensus 188 ~~~~~~l~ 195 (237)
+++.+.+.
T Consensus 207 ~~l~~~in 214 (243)
T 4gvo_A 207 TKLSKKVD 214 (243)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 87766654
No 34
>1xs5_A 29 kDa protein, membrane lipoprotein TPN32; periplasmic binding protein, methionine, membrane protein; 1.85A {Treponema pallidum} SCOP: c.94.1.1
Probab=91.32 E-value=0.084 Score=45.62 Aligned_cols=63 Identities=17% Similarity=0.293 Sum_probs=37.9
Q ss_pred HHHHHHHhcCCccEEE--eeCCCCCCC-CCCCceeeee--cCCCCCCeEEEeCCCCCCccCCCCCeeecCC
Q 026500 41 KEIDEALINSQIDIAV--HSMKDVPTY-LPEKTILPCN--LQREDVRDAFISLSAASLAELPAGSIVGTAS 106 (237)
Q Consensus 41 keLe~aLl~g~iDiAV--HSlKDlP~~-l~~gL~iaav--~~R~dprD~LV~~~~~~l~~Lp~ga~IGTSS 106 (237)
-+.-+||.+|++|+.. |..= |-.. -..|..+.++ ...+ | ..+.+.+.++++|||+|++||.+.
T Consensus 41 ~~~n~AL~~G~iD~n~fq~~~~-l~~~~~~~g~~l~~v~~~~~~-p-~g~ys~kiksl~dL~~G~~Iaip~ 108 (241)
T 1xs5_A 41 VALNEAVMRGDILMNFFQHVPH-MQQFNQEHNGDLVSVGNVHVE-P-LALYSRTYRHVSDFPAGAVIAIPN 108 (241)
T ss_dssp HHHHHHHHHTSSSEEEEEEHHH-HHHHHHHHTCCEEEEEEEEEC-C-CEEECSSCCSGGGCCTTCEEEEEC
T ss_pred HHHHHHHHcCCCCEeccCCHHH-HHHHHHHCCCCEEEEEeeccc-c-ceeecCCCCChHHcCCCCEEEEeC
Confidence 4677999999999986 4210 0000 0123323222 2222 2 355677889999999999999644
No 35
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0
Probab=90.80 E-value=0.21 Score=39.28 Aligned_cols=141 Identities=16% Similarity=0.139 Sum_probs=80.9
Q ss_pred HHHHHHHhcCCccEEEeeCCCCCCCCCCCceeeeecCCCCCCeEEEeCCC----CCCccCCCCCeeecCChhH-HHHHHH
Q 026500 41 KEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLSA----ASLAELPAGSIVGTASLRR-KSQILH 115 (237)
Q Consensus 41 keLe~aLl~g~iDiAVHSlKDlP~~l~~gL~iaav~~R~dprD~LV~~~~----~~l~~Lp~ga~IGTSS~RR-~aql~~ 115 (237)
+++.++|.+|++|++ -++-.-| +....+.+... -. ....+++.+++ .++++| .|.+||+..--- ...+..
T Consensus 60 ~~~~~~l~~g~~D~~-~~~~~~~-~r~~~~~~s~p-~~-~~~~~~~~~~~~~~~~~~~dL-~g~~i~~~~g~~~~~~l~~ 134 (234)
T 3h7m_A 60 SEMFSALKSGRVDVL-QGISWSE-KRARQIDFTPP-HT-IVYHAIFARRDSPPAAGLEDL-RGRKVALHRDGIMHEYLAE 134 (234)
T ss_dssp GGHHHHHHTTSSSEE-EEEECCH-HHHTTEEEEEE-EE-EEEEEEEEESSSCCCSSGGGG-TTSCEEEETTSHHHHHHHT
T ss_pred HHHHHHHhCCCeeEE-EeccCCH-hHHhhcCCCcc-cc-ccceEEEEECCCCCCCCHHHh-CCCEEEEEeCchHHHHHHh
Confidence 467788999999995 3322111 11222222211 01 12234555433 456777 577887754332 345667
Q ss_pred hCCCCeEEeccCCCHHHHHHhhccCCccEEeeeccc----ccccCCCCcceeeecCCCCCCCCCCceEEEEEecCchhhh
Q 026500 116 RYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAG----LKRLSMTENVTNILSVDDMLPAVAQGAIGIACRSNDEKMV 191 (237)
Q Consensus 116 ~~pdl~v~~~iRGNV~TRL~KL~~ge~DaiILA~AG----L~RLgl~~~i~~~l~~~~~lPA~GQGalave~R~~d~~~~ 191 (237)
..|+.+++ ... +.+.-++.|.+|++||++....- +++.+... + ..... .....-+++-++++++++.
T Consensus 135 ~~~~~~~~-~~~-~~~~~~~~l~~g~vDa~~~~~~~~~~~~~~~~~~~-~-~~~~~-----~~~~~~~~~~~~~~~~~l~ 205 (234)
T 3h7m_A 135 RGYGKDLV-LTP-TPADALRLLAAGGCDYAVVAMVPGMYIIRENRLTN-L-VPVAR-----SIAAQRYGYAVRQGDAELL 205 (234)
T ss_dssp TTCGGGEE-EES-SHHHHHHHHHTTSSSEEEEEHHHHHHHHHHTTCTT-E-EEEEE-----EEEEEEEEEEEETTCHHHH
T ss_pred cCCCceEE-EeC-CHHHHHHHHHcCCceEEEeccHHHHHHHHhcCCCc-e-EEecc-----ccCCCceEEEEeCCCHHHH
Confidence 77888887 554 78999999999999999986553 33444322 1 11111 1122346777888877666
Q ss_pred hhhc
Q 026500 192 PFTT 195 (237)
Q Consensus 192 ~~l~ 195 (237)
+.+.
T Consensus 206 ~~l~ 209 (234)
T 3h7m_A 206 ARFS 209 (234)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
No 36
>3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein; periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin protein; HET: NFM; 2.40A {Bacillus halodurans c-125}
Probab=89.08 E-value=1.4 Score=37.07 Aligned_cols=100 Identities=15% Similarity=0.124 Sum_probs=57.0
Q ss_pred HHHHHHhcCCccEEEeeCCCCCCCCCCC--ceeeeecCCCCCCeEEEeCC---CCCCccCCCCCeeecCChh----H-HH
Q 026500 42 EIDEALINSQIDIAVHSMKDVPTYLPEK--TILPCNLQREDVRDAFISLS---AASLAELPAGSIVGTASLR----R-KS 111 (237)
Q Consensus 42 eLe~aLl~g~iDiAVHSlKDlP~~l~~g--L~iaav~~R~dprD~LV~~~---~~~l~~Lp~ga~IGTSS~R----R-~a 111 (237)
++-++|.+|++|+++-+.--+-.....| +...+.+-..++ -++++++ .++++|| +|.+||+++.- - ..
T Consensus 46 ~~~~~l~~G~~D~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~l~~~~~s~i~s~~DL-~Gk~i~~~~~~~~~~~~~~ 123 (302)
T 3ix1_A 46 DPIQLTASGAIPLALSYQPDVILARSKDLPVVSVASVVRSPL-NHVMFLAEQDFDSPADL-VGLTVGYPGIPVNEPILKT 123 (302)
T ss_dssp HHHHHHHHTSCSEEEECHHHHHHHHHTTCCEEEEEEEECSCC-EEEEEEGGGCCSSGGGG-TTSEEEECSCTTHHHHHHH
T ss_pred hHHHHHHCCCCCEEecCHHHHHHHHHCCCCEEEEEEEeccCC-EEEEEECCCCCCChHHc-CCCEEEeCCCcchHHHHHH
Confidence 5779999999999987621000011122 333333333333 5566553 3567888 58899875431 1 11
Q ss_pred HHHHh--C-CCCeEEeccCCCHHHHHHhhccCCccEEee
Q 026500 112 QILHR--Y-PSLKVMENFRGNVQTRLRKLNERVVQATLL 147 (237)
Q Consensus 112 ql~~~--~-pdl~v~~~iRGNV~TRL~KL~~ge~DaiIL 147 (237)
.++.. . .+++++ +...++ +.-|.+|+.||++.
T Consensus 124 ~l~~~Gl~~~~v~~~-~~~~~~---~~al~~G~vDa~~~ 158 (302)
T 3ix1_A 124 MVEAAGGDYEQVHLM-DVGFEL---GASIVSGRADAVVG 158 (302)
T ss_dssp HHHHTTCCGGGCEEE-ECTTCH---HHHHHHSSSSEEEE
T ss_pred HHHHcCCCHHHeEEE-ecCccH---HHHHhCCCCCEEEE
Confidence 22222 1 248888 775554 45566899999873
No 37
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A*
Probab=89.01 E-value=0.57 Score=38.51 Aligned_cols=107 Identities=9% Similarity=0.090 Sum_probs=63.7
Q ss_pred HHHHHHHHhcCCccEEEeeCCCCCCCCCCCceeeeecCCCCCCeEEEeCCC---CCCccCCCCCeeecCChhH-HHHHHH
Q 026500 40 TKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLSA---ASLAELPAGSIVGTASLRR-KSQILH 115 (237)
Q Consensus 40 tkeLe~aLl~g~iDiAVHSlKDlP~~l~~gL~iaav~~R~dprD~LV~~~~---~~l~~Lp~ga~IGTSS~RR-~aql~~ 115 (237)
.+++.++|.+|++|+++-++-..| +..+.+.+.. +-- ....+++.+++ .++++| .|.+||+..--- ...+..
T Consensus 89 ~~~~~~~l~~G~~D~~~~~~~~~~-~r~~~~~~s~-p~~-~~~~~l~~~~~~~i~~~~dL-~g~~i~~~~g~~~~~~l~~ 164 (272)
T 2pvu_A 89 WDPLFASLQSKEVDMGISGITITD-ERKQSYDFSD-PYF-EATQVILVKQGSPVKNALDL-KGKTIGVQNATTGQEAAEK 164 (272)
T ss_dssp HHHHHHHHHHTSSSEECSSCBCCH-HHHTTEEECS-CCE-EECEEEEEETTCCCCSGGGG-TTSCEEEETTSHHHHHHHH
T ss_pred HHHHHHHHhCCCCCEEEeCCcCCH-HHHhcCccch-hhh-ccceEEEEECCCCCCCHHHh-CCCeEEEEcCchHHHHHHH
Confidence 357788999999999975432111 1112232211 111 11234555443 356777 577777632211 234445
Q ss_pred hCC-CCeEEeccCCCHHHHHHhhccCCccEEeeecccc
Q 026500 116 RYP-SLKVMENFRGNVQTRLRKLNERVVQATLLALAGL 152 (237)
Q Consensus 116 ~~p-dl~v~~~iRGNV~TRL~KL~~ge~DaiILA~AGL 152 (237)
.++ +.+++ .. .+.++-++.|.+|++|+++....-+
T Consensus 165 ~~~~~~~i~-~~-~~~~~~~~~l~~G~vDa~~~~~~~~ 200 (272)
T 2pvu_A 165 LFGKGPHIK-KF-ETTVVAIMELLNGGVDAVITDNAVA 200 (272)
T ss_dssp HHCSSTTEE-EE-SSHHHHHHHHHTTSCSEEEEEHHHH
T ss_pred hcCCCCeEE-Ec-CCHHHHHHHHHcCCccEEEeCHHHH
Confidence 444 67776 55 5889999999999999999866543
No 38
>2a5s_A N-methyl-D-aspartate receptor nmdar2A subunit, NMDA receptor nmdar2A; protein-ligand complex, metal transport,membrane protein; HET: GLU; 1.70A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 2a5t_B* 3oen_A* 3oel_A* 3oem_A* 3oek_A*
Probab=87.20 E-value=0.37 Score=40.66 Aligned_cols=107 Identities=16% Similarity=0.132 Sum_probs=59.8
Q ss_pred HHHHHHHhcCCccEEEeeCCCCCCCCCCCceeeeecCCCCCCeEEEeCCCC-----------CCccCCCCCeeec---CC
Q 026500 41 KEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLSAA-----------SLAELPAGSIVGT---AS 106 (237)
Q Consensus 41 keLe~aLl~g~iDiAVHSlKDlP~~l~~gL~iaav~~R~dprD~LV~~~~~-----------~l~~Lp~ga~IGT---SS 106 (237)
.++-.+|.+|++|+++.++---|. ..+.+.+. .|- -...-+++.++.. ++++|..|.+||+ +|
T Consensus 95 ~~~~~~l~~g~~D~~~~~~~~t~~-R~~~~~fs-~p~-~~~~~~~~~~~~~~~~~~~dl~~~~~~~l~~~~~vg~v~~~s 171 (284)
T 2a5s_A 95 NGMIGEVVYQRAVMAVGSLTINEE-RSEVVDFS-VPF-VETGISVMVSRGTQVTGLSDKKFQRPHDYSPPFRFGTVPNGS 171 (284)
T ss_dssp CHHHHHHHTTSCSEECSSCBCCHH-HHTTEEEC-CCC-EEECEEEEEETTCCCCSTTSHHHHSGGGSSSCCCEECCTTSH
T ss_pred HHHHHHHhcCCcCEEEEEEEEecc-ccceEEec-cCc-hhcCEEEEEECCcccccccccccCChhHcCCCceEEEEeCCc
Confidence 367789999999999976432221 01111110 000 0011223333221 2334444778884 33
Q ss_pred hhHHHHHHHhCCCC--eEEeccC-CCHHHHHHhhccCCccEEeeeccccc
Q 026500 107 LRRKSQILHRYPSL--KVMENFR-GNVQTRLRKLNERVVQATLLALAGLK 153 (237)
Q Consensus 107 ~RR~aql~~~~pdl--~v~~~iR-GNV~TRL~KL~~ge~DaiILA~AGL~ 153 (237)
. ...+...+|+. +++ ... .+.+.-+++|.+|++||+|.-..-+.
T Consensus 172 ~--~~~l~~~~~~~~~~i~-~~~~~~~~~~l~~l~~G~vDa~i~d~~~~~ 218 (284)
T 2a5s_A 172 T--ERNIRNNYPYMHQYMT-RFNQRGVEDALVSLKTGKLDAFIYDAAVLN 218 (284)
T ss_dssp H--HHHHHTTCHHHHHHHG-GGCCSSHHHHHHHHHTTSCSEEEEEHHHHH
T ss_pred h--HHHHHHHHHHHHHHHH-hccCCCHHHHHHHHHcCCeeEEEEchHHHH
Confidence 3 44566666664 233 332 68999999999999999998665443
No 39
>2x7q_A Ca3427, possible thiamine biosynthesis enzyme; unknown function; 2.00A {Candida albicans} PDB: 2x7p_A
Probab=86.26 E-value=1.2 Score=38.27 Aligned_cols=101 Identities=10% Similarity=0.007 Sum_probs=58.6
Q ss_pred HHHHHHhcCCccEEEeeCCCCCCCCCCC---ceeeeecCCCCCCeEEEeC----CCCCCccCCCCCeeecCC---hhHH-
Q 026500 42 EIDEALINSQIDIAVHSMKDVPTYLPEK---TILPCNLQREDVRDAFISL----SAASLAELPAGSIVGTAS---LRRK- 110 (237)
Q Consensus 42 eLe~aLl~g~iDiAVHSlKDlP~~l~~g---L~iaav~~R~dprD~LV~~----~~~~l~~Lp~ga~IGTSS---~RR~- 110 (237)
.+-++|.+|++|+++-++=-+-.....| +.+.+..-+.....+++++ ..++++|| .+||+++ .--.
T Consensus 57 ~~~~al~~G~~D~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~~~~i~v~~ds~~i~s~~DL---K~i~~~~~gs~~~~~ 133 (321)
T 2x7q_A 57 RLINLLNSNEVDIAIGLTEAFIADIAKGNENIHVLDTYVKSPLLWAVSTGSNRDDVTDAKQL---KRIGVSRIGSGSYVM 133 (321)
T ss_dssp HHHHHHHTTSCSEEEEEHHHHHHHHHTTCTTEEEEEEEECSCCEEEEEEESSCTTCSSGGGC---CEEEESSTTSHHHHH
T ss_pred HHHHHHHcCCccEEecCcHHHHHHHHCCCCcEEEEEEecCCCcceEEEECCCCCCCCChHHc---ceEEeeCCCcHHHHH
Confidence 4678999999999986431010001122 5554444433322345543 23578889 5888764 1111
Q ss_pred -HHH-HHh--CCCCeEEeccCCCHHHHHHhhccC----CccEEee
Q 026500 111 -SQI-LHR--YPSLKVMENFRGNVQTRLRKLNER----VVQATLL 147 (237)
Q Consensus 111 -aql-~~~--~pdl~v~~~iRGNV~TRL~KL~~g----e~DaiIL 147 (237)
..+ +.. -|+++++ .+. +....+.-|.+| +.||++.
T Consensus 134 ~~~l~~~~Gl~~dv~~v-~~~-~~~~~~~al~~G~~~~~vDa~~~ 176 (321)
T 2x7q_A 134 SFVLAHQLGVPSFDQFQ-VLS-NFKNLRDSVNLKDGVEGSDAFMW 176 (321)
T ss_dssp HHHHHHHHTSCCCCEEE-ECC-SHHHHHHHHTTCTTSCCCSEEEE
T ss_pred HHHHHHhcCCCcceEEE-EcC-ChHHHHHHHHcCCCccceEEEEe
Confidence 122 222 2357887 665 577889999999 9999754
No 40
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A
Probab=85.97 E-value=0.44 Score=39.01 Aligned_cols=140 Identities=12% Similarity=0.055 Sum_probs=75.0
Q ss_pred HHHHHHHhcCCccEEEeeCCCCCCCCCCCceeeeecCCCCCCeEEEeCC-----CCCCccCCCCCeeecCChh-HHHHHH
Q 026500 41 KEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLS-----AASLAELPAGSIVGTASLR-RKSQIL 114 (237)
Q Consensus 41 keLe~aLl~g~iDiAVHSlKDlP~~l~~gL~iaav~~R~dprD~LV~~~-----~~~l~~Lp~ga~IGTSS~R-R~aql~ 114 (237)
.++.++|.+|++|+++-++-.-|. ..+.+.+.. +- -....+++.++ ..+++|| .|.+||+..-- -...+.
T Consensus 78 ~~~~~~l~~g~~D~~~~~~~~t~~-r~~~~~fs~-p~-~~~~~~~~~~~~~~~~i~~~~dL-~g~~v~v~~g~~~~~~l~ 153 (259)
T 4dz1_A 78 DGMLGAVASGQADVAFSGISITDK-RKKVIDFSE-PY-YINSFYLVSMANHKITLNNLNEL-NKYSIGYPRGMAYSDLIK 153 (259)
T ss_dssp HHHHHHHHHTSSSEEEEEEECCHH-HHTTEEECC-CS-EEEEEEEEEETTSCCCCCSGGGG-GGSCEEEETTSTHHHHHH
T ss_pred HHHHHHHhCCCCCEEEECCcCCHH-Hhhcccccc-ch-hhCceEEEEEcCCCCCCCCHHHh-CCCEEEEeCCcHHHHHHH
Confidence 456778999999998765322221 111111111 00 01112344322 2456777 46677653221 134455
Q ss_pred HhCCC------CeEEeccCCCHHHHHHhhccCCccEEeeeccccccc----CCCCcceeeecCCCCCCCCCCceEEEEEe
Q 026500 115 HRYPS------LKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRL----SMTENVTNILSVDDMLPAVAQGAIGIACR 184 (237)
Q Consensus 115 ~~~pd------l~v~~~iRGNV~TRL~KL~~ge~DaiILA~AGL~RL----gl~~~i~~~l~~~~~lPA~GQGalave~R 184 (237)
...|+ .+++ ... +.+.-++.|.+|++||++....-+..+ +.. +..... .....-+++-++
T Consensus 154 ~~~~~~g~~~~~~~~-~~~-~~~~~~~~l~~G~vDa~~~~~~~~~~~~~~~~~~--~~~~~~------~~~~~~~~~~~~ 223 (259)
T 4dz1_A 154 NDLEPKGYYSLSKVK-LYP-TYNETMADLKNGNLDLAFIEEPVYFTFKNKKKMP--IESRYV------FKNVDQLGIAFK 223 (259)
T ss_dssp HHTGGGTSCCGGGCE-EES-SHHHHHHHHHHTSCSEEEEEHHHHHHHHHTSCCC--EEEEEE------EEEEEEEEEEEE
T ss_pred HhcccccccccceeE-ecC-CHHHHHHHHHcCCCCEEEecHHHHHHHhccCCCc--eEeecc------cCCCceEEEEEe
Confidence 66665 6666 443 789999999999999999876543222 221 111110 111234688889
Q ss_pred cCchhhhhhhc
Q 026500 185 SNDEKMVPFTT 195 (237)
Q Consensus 185 ~~d~~~~~~l~ 195 (237)
+++ ++.+.+.
T Consensus 224 k~~-~l~~~ln 233 (259)
T 4dz1_A 224 KGS-PVRDDFN 233 (259)
T ss_dssp TTC-HHHHHHH
T ss_pred CCh-HHHHHHH
Confidence 887 4555443
No 41
>2ozz_A Hypothetical protein YHFZ; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.30A {Shigella flexneri 2A} SCOP: c.94.1.1
Probab=85.83 E-value=0.3 Score=42.59 Aligned_cols=141 Identities=17% Similarity=0.126 Sum_probs=74.5
Q ss_pred HHHhcCCccEEEeeCCCCCCCC-CCCcee-eeecCCCC-CCeEEEeCCCCCCccCCCCCeeecCChh--HHHHHHHhCCC
Q 026500 45 EALINSQIDIAVHSMKDVPTYL-PEKTIL-PCNLQRED-VRDAFISLSAASLAELPAGSIVGTASLR--RKSQILHRYPS 119 (237)
Q Consensus 45 ~aLl~g~iDiAVHSlKDlP~~l-~~gL~i-aav~~R~d-prD~LV~~~~~~l~~Lp~ga~IGTSS~R--R~aql~~~~pd 119 (237)
.+|.+|++|+||=|+===|..+ ..++.+ .-+.+--- ....+|.+++. -... .+||--+-- -..--...+++
T Consensus 59 ~aL~~gk~D~aI~S~~aa~e~~~~~~r~~~vdFg~~yYv~~h~li~~~~~-~~~i---krVGvd~gS~dq~~lt~~~~~g 134 (231)
T 2ozz_A 59 ECLLNGVYDMAVVSRLAAESYLSQNNLCIALELGPHTYVGEHQLICRKGE-SGNV---KRVGLDSRSADQKIMTDVFFGD 134 (231)
T ss_dssp HHHHTTSCSEEEEEHHHHHHHHHHSCEEEEEECCTTSSSCCEEEEEETTC-GGGC---CEEEECTTCHHHHHHHHHHHTT
T ss_pred HHHHcCCCCEEEEecccchhhhcccCeEEEEEcCCCccccCeEEEEeCCC-cccc---EEEEecCCChhHHHHHhhhcCC
Confidence 7999999999999851101000 011211 11222111 22345554431 1122 688864432 22222223477
Q ss_pred CeEEeccCCCHHHHHHhhccCCccEEee----ecccccccCCCCcceeeecCCCCCCCCCCceEEEEEecCchhhhhhhc
Q 026500 120 LKVMENFRGNVQTRLRKLNERVVQATLL----ALAGLKRLSMTENVTNILSVDDMLPAVAQGAIGIACRSNDEKMVPFTT 195 (237)
Q Consensus 120 l~v~~~iRGNV~TRL~KL~~ge~DaiIL----A~AGL~RLgl~~~i~~~l~~~~~lPA~GQGalave~R~~d~~~~~~l~ 195 (237)
.+|. .+.-+..+=+..|.+|+.||+|+ +.|. ..-++. ...+.........+..+ |.+|+++..+.+++.
T Consensus 135 ~~Ve-~ve~~y~~~i~~L~~G~IDA~Iwn~d~~~a~-~~~~l~---~~~l~~~~~~~~~~eav--I~v~k~n~~L~~~ln 207 (231)
T 2ozz_A 135 SDVE-RVDLSYHESLQRIVKGDVDAVIWNVVAENEL-TMLGLE---ATPLTDDPRFLQATEAV--VLTRVDDYPMQQLLR 207 (231)
T ss_dssp SCCE-EEECCHHHHHHHHHHTSCCEEEEEC-CHHHH-HHTTEE---EEECCSCHHHHHTTCEE--EEEETTCHHHHHHHH
T ss_pred CeEE-EEECCHHHHHHHHHcCCccEEEEcCcchhhh-cCCCcc---eeccccccccccCCceE--EEEECCCHHHHHHHH
Confidence 7755 55567899999999999999999 3233 122211 11121111112334444 667999999988887
Q ss_pred c
Q 026500 196 H 196 (237)
Q Consensus 196 ~ 196 (237)
.
T Consensus 208 ~ 208 (231)
T 2ozz_A 208 A 208 (231)
T ss_dssp H
T ss_pred H
Confidence 4
No 42
>2g29_A Nitrate transport protein NRTA; solute-binding protein, alpha-beta protein; 1.50A {Synechocystis SP}
Probab=84.55 E-value=2.5 Score=38.36 Aligned_cols=102 Identities=10% Similarity=0.034 Sum_probs=61.1
Q ss_pred HHHHHHHhcCC----ccEEEeeCCCCCC---------CCCCCceeeeecCCCCCCeEEEeCCC-------CCC-------
Q 026500 41 KEIDEALINSQ----IDIAVHSMKDVPT---------YLPEKTILPCNLQREDVRDAFISLSA-------ASL------- 93 (237)
Q Consensus 41 keLe~aLl~g~----iDiAVHSlKDlP~---------~l~~gL~iaav~~R~dprD~LV~~~~-------~~l------- 93 (237)
..+-++|.+|+ +|+++-+ -++|. .....+.+.+.+.+. . .+++.++. +++
T Consensus 74 ~~~~~al~~G~~~~giD~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g-~~i~v~~~~~~~~i~~s~~~l~~~~ 150 (417)
T 2g29_A 74 GTTRDNLVLGSASGGIDGAHIL-TPMPYLITMGTVTDGKPTPMYILARLNVN-G-QGIQLGNNYKDLKVGTDAAPLKEAF 150 (417)
T ss_dssp HHHHHHHHHCGGGTSCSEEEEE-THHHHHHHHCTTSSSCCCCEEEEEECCBS-C-EEEEECGGGGGGCCCSCCTTHHHHH
T ss_pred HHHHHHHHCCCCcCCcCeEeec-chHHHHHHhCcccCCCCCCEEEEEEeccC-C-eEEEEecchhhccccCCHHHHHHHH
Confidence 45779999999 9999753 24441 112335555554333 2 55554432 344
Q ss_pred ccCCCCCeeecCC---hhH-H--HHHHH--hCC--CCeEEeccCCCHHHHHHhhccCCccEEeeec
Q 026500 94 AELPAGSIVGTAS---LRR-K--SQILH--RYP--SLKVMENFRGNVQTRLRKLNERVVQATLLAL 149 (237)
Q Consensus 94 ~~Lp~ga~IGTSS---~RR-~--aql~~--~~p--dl~v~~~iRGNV~TRL~KL~~ge~DaiILA~ 149 (237)
++| +|.+||+++ .-. - ..|.. +.| |++++ .+. -...+.-|.+|+.||.++..
T Consensus 151 ~dL-kGk~iav~~~gs~~~~~l~~~L~~~Gl~~~~dv~~v-~~~--~~~~~~aL~~G~vDa~~~~e 212 (417)
T 2g29_A 151 AKV-TDPKVAMTFPGGTHDMWIRYWLAAGGMEPGKDFSTI-VVP--PAQMVANVKVNAMESFCVGE 212 (417)
T ss_dssp HTS-SSCEEEESSTTSHHHHHHHHHHHHTTCCBTTTBEEE-ECC--GGGHHHHHHTTSCSEEEEET
T ss_pred Hhc-CCCEEEEeCCCCHHHHHHHHHHHHcCCCCCCceEEE-ECC--HHHHHHHHHcCCCCEEEeCC
Confidence 456 388999753 221 1 11222 234 68888 773 36778889999999999864
No 43
>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis}
Probab=83.31 E-value=1.7 Score=35.73 Aligned_cols=141 Identities=13% Similarity=0.109 Sum_probs=75.5
Q ss_pred HHHHHHHhcCCccEEEeeCCCCCCCCCCCceeeeecCCCCCCeEEEeCCC-----CCCccCCCCCeeecCChhHHHHHHH
Q 026500 41 KEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLSA-----ASLAELPAGSIVGTASLRRKSQILH 115 (237)
Q Consensus 41 keLe~aLl~g~iDiAVHSlKDlP~~l~~gL~iaav~~R~dprD~LV~~~~-----~~l~~Lp~ga~IGTSS~RR~aql~~ 115 (237)
+++-++|.+|++|+++-++---| +..+.+.+.. +- -....+++++++ .++++| .|.+||+..---......
T Consensus 73 ~~~~~~l~~G~~D~~~~~~~~t~-~r~~~~~fs~-p~-~~~~~~l~~~~~~~~~i~~~~dL-~g~~i~v~~g~~~~~~l~ 148 (271)
T 2iee_A 73 DGMLTAVNSGQVDAAANDIDVTK-DREEKFAFST-PY-KYSYGTAIVRKDDLSGIKTLKDL-KGKKAAGAATTVYMEVAR 148 (271)
T ss_dssp TTHHHHHHHTSSSEECSSCBCCH-HHHTTEEECC-CS-EEEEEEEEECTTTGGGCSSGGGG-TTCEEESCTTSHHHHHHH
T ss_pred HHHHHHHHCCCcCEEEeCCcCCh-hhccceEEee-cc-eeCCeEEEEECCCCCCCCCHHHh-CCCEEEEeCCccHHHHHH
Confidence 35668889999999987542111 1112222211 00 011234555533 357777 688998754433344444
Q ss_pred hCCCCeEEeccCCCHHHH--HHhhccCCccEEeeecc-c---cc-ccCCCCcceeeecCCCCCCCCCCceEEEEEecCch
Q 026500 116 RYPSLKVMENFRGNVQTR--LRKLNERVVQATLLALA-G---LK-RLSMTENVTNILSVDDMLPAVAQGAIGIACRSNDE 188 (237)
Q Consensus 116 ~~pdl~v~~~iRGNV~TR--L~KL~~ge~DaiILA~A-G---L~-RLgl~~~i~~~l~~~~~lPA~GQGalave~R~~d~ 188 (237)
.++. +++ ... +...- ++.|.+|++| +++... . +. ..+ ...+ .++.. +.....-+++-++++++
T Consensus 149 ~~~~-~~~-~~~-~~~~~~l~~~L~~GrvD-~i~~~~~~~~~~~~~~~-~~~~-~~~~~----~~~~~~~~~~~~~k~~~ 218 (271)
T 2iee_A 149 KYGA-KEV-IYD-NATNEQYLKDVANGRTD-VILNDYYLQTLALAAFP-DLNI-TIHPD----IKYMPNKQALVMKKSNA 218 (271)
T ss_dssp HTTC-EEE-ECS-SCCHHHHHHHHHHTSSC-EEEEEHHHHHHHHHHCT-TSSC-EECSS----CCEEEEEECCEEETTCH
T ss_pred HcCC-ceE-EeC-ChhhHHHHHHHHcCCcc-EEeccHHHHHHHHHhCC-CCce-EEecC----CCcccceEEEEEcCCCH
Confidence 5554 776 554 56667 9999999999 555432 2 22 211 1111 12211 12233456677888877
Q ss_pred hhhhhhc
Q 026500 189 KMVPFTT 195 (237)
Q Consensus 189 ~~~~~l~ 195 (237)
++.+.+.
T Consensus 219 ~l~~~ln 225 (271)
T 2iee_A 219 ALQKKMN 225 (271)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665554
No 44
>2x26_A Periplasmic aliphatic sulphonates-binding protein; transport protein; 1.75A {Escherichia coli}
Probab=83.21 E-value=1.6 Score=36.69 Aligned_cols=106 Identities=11% Similarity=0.001 Sum_probs=59.8
Q ss_pred HHHHHHHhcCCccEEEeeCCCCCCCCCCC--ceeeeecCCCCCCeEEEeCCC---CCCccCCCCCeeecC--C-hhHH--
Q 026500 41 KEIDEALINSQIDIAVHSMKDVPTYLPEK--TILPCNLQREDVRDAFISLSA---ASLAELPAGSIVGTA--S-LRRK-- 110 (237)
Q Consensus 41 keLe~aLl~g~iDiAVHSlKDlP~~l~~g--L~iaav~~R~dprD~LV~~~~---~~l~~Lp~ga~IGTS--S-~RR~-- 110 (237)
.++-++|.+|++|+++-+.-..-.....| +.+.+.........+++++++ .+++|| .|.+||+. | .+..
T Consensus 43 ~~~~~~l~~G~~D~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~lv~~~~~~i~s~~dL-~Gk~i~~~~gs~~~~~l~ 121 (308)
T 2x26_A 43 PQMLEALNVGSIDLGSTGDIPPIFAQAAGADLVYVGVEPPKPKAEVILVAENSPIKTVADL-KGHKVAFQKGSSSHNLLL 121 (308)
T ss_dssp HHHHHHHHHTSCSEEEECSHHHHHHHHTTCCEEEEEEECCCGGGEEEEEETTCSCCSGGGG-TTSEEEECTTSHHHHHHH
T ss_pred HHHHHHHHCCCCCEEcccCcHHHHHHhcCCCeEEEEEecCCCCceEEEEeCCCCCCCHHHc-CCCEEeeeCCCcHHHHHH
Confidence 36789999999999986432100001122 333333322233456666543 456777 47788863 2 2221
Q ss_pred HHHHHhC--C-CCeEEeccCCCHHHHHHhhccCCccEEeeecc
Q 026500 111 SQILHRY--P-SLKVMENFRGNVQTRLRKLNERVVQATLLALA 150 (237)
Q Consensus 111 aql~~~~--p-dl~v~~~iRGNV~TRL~KL~~ge~DaiILA~A 150 (237)
..++... | +++++ .. +...-+..|.+|+.||.++...
T Consensus 122 ~~l~~~Gl~~~~v~~~-~~--~~~~~~~al~~G~vDa~~~~~~ 161 (308)
T 2x26_A 122 RALRQAGLKFTDIQPT-YL--TPADARAAFQQGNVDAWAIWDP 161 (308)
T ss_dssp HHHHHTTCCGGGSEEE-EC--CHHHHHHHHHTTSSSEEEEETT
T ss_pred HHHHHcCCCHHHeEEE-ec--ChHHHHHHHHcCCCCEEEecch
Confidence 1222221 2 35554 33 4677889999999999988543
No 45
>2pfz_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.80A {Bordetella pertussis tohama I}
Probab=82.90 E-value=14 Score=31.91 Aligned_cols=132 Identities=8% Similarity=0.038 Sum_probs=78.6
Q ss_pred HHHHHHHhcCCccEEEeeCC------------CCCCCCC----------------------CCceeeeecCCCCCCeEEE
Q 026500 41 KEIDEALINSQIDIAVHSMK------------DVPTYLP----------------------EKTILPCNLQREDVRDAFI 86 (237)
Q Consensus 41 keLe~aLl~g~iDiAVHSlK------------DlP~~l~----------------------~gL~iaav~~R~dprD~LV 86 (237)
.|+=+++..|.+|+++-+.- |+|.-.+ .|+.+.+...-. ++. +.
T Consensus 48 ~~~~~~v~~G~id~~~~~~~~~~~~~p~~~~~~lPf~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~-~~~-~~ 125 (301)
T 2pfz_A 48 PEIKRAVQGNQAQIGEILLTNFANEDPVYELDGLPFLATGYDASFKLYQAQKPFLEKKLASQGMMLLYSVAWP-PQG-IF 125 (301)
T ss_dssp GGHHHHHHTTSSSEEEEEGGGGTTTCGGGTGGGSTTSCCSHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECC-CCE-EE
T ss_pred HHHHHHHHCCceeeEechhhhccccCchhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEecccC-Ccc-ee
Confidence 56779999999999988742 5665332 366665543322 343 44
Q ss_pred eC-CCCCCccCCCCCeeecCChhHHHHHHHhCCCCeEEeccCCCHHHHHHhhccCCccEEeeecccccccCCCCcceeee
Q 026500 87 SL-SAASLAELPAGSIVGTASLRRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTENVTNIL 165 (237)
Q Consensus 87 ~~-~~~~l~~Lp~ga~IGTSS~RR~aql~~~~pdl~v~~~iRGNV~TRL~KL~~ge~DaiILA~AGL~RLgl~~~i~~~l 165 (237)
++ .-.+++|| +|.+|.|.+.=-...++.+ ....+ ++- ...=...|.+|..||..-....+.-.++.+...++.
T Consensus 126 ~~~pI~s~~Dl-kG~KiR~~~~~~~~~~~~l--Ga~pv-~~~--~~E~y~ALq~G~vDg~~~~~~~~~~~~~~ev~ky~~ 199 (301)
T 2pfz_A 126 ANRDIKQVSDM-KGLKWRAYSPVTAKIAELV--GAQPV-TVQ--QAELAQAMATGVIDSYMSSGSTGFDTKTYEYIKKFY 199 (301)
T ss_dssp ESSCCSSGGGG-TTCEEEESSHHHHHHHHHH--TCEEE-ECC--GGGHHHHHHTTSCSEEEECHHHHHHTTGGGTCCEEE
T ss_pred eCCCCCChHHh-cCCEEecCChhHHHHHHHc--CCcce-ecC--HHHHHHHHhcCeeeEEecCccccccccHHHHhhhhe
Confidence 43 33567888 7999998653223344444 46666 554 333344556899999988777777777654333332
Q ss_pred cCCCCCCCCCCceEEEEEec
Q 026500 166 SVDDMLPAVAQGAIGIACRS 185 (237)
Q Consensus 166 ~~~~~lPA~GQGalave~R~ 185 (237)
... .......+.+++
T Consensus 200 ~~~-----~~~~~~~~~~n~ 214 (301)
T 2pfz_A 200 DTE-----AWLPKNAVLVNK 214 (301)
T ss_dssp CCC-----CCCCEEEEEEEH
T ss_pred ecc-----cccceeEEEEcH
Confidence 222 223444566654
No 46
>3hn0_A Nitrate transport protein; ABC transporter, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; 1.75A {Parabacteroides distasonis}
Probab=81.04 E-value=1.7 Score=37.31 Aligned_cols=95 Identities=14% Similarity=0.027 Sum_probs=60.3
Q ss_pred HHHHHHHHhcCCccEEEeeC--------CCCCCCCCCCceeeeecCCCCCCeEEEeCCCCCCccCCCCCeeecCCh---h
Q 026500 40 TKEIDEALINSQIDIAVHSM--------KDVPTYLPEKTILPCNLQREDVRDAFISLSAASLAELPAGSIVGTASL---R 108 (237)
Q Consensus 40 tkeLe~aLl~g~iDiAVHSl--------KDlP~~l~~gL~iaav~~R~dprD~LV~~~~~~l~~Lp~ga~IGTSS~---R 108 (237)
..++-++|.+|++|+++-+. |.. .+.+.++.... .-.+|+++. | +|-+||+++. =
T Consensus 43 ~~~~~~al~~G~~D~~~~~~~~~~~~~~~g~------~~~i~~~~~~g--~~~lv~~~~-----L-kGK~Iav~~~gs~~ 108 (283)
T 3hn0_A 43 PDLAQALLIKQETDIAVLPMINAANLYNKGI------KIKLAGCPIWG--TLYLVEKTP-----L-KEPALYVFGNGTTP 108 (283)
T ss_dssp HHHHHHHHHTTCCSEEEEEHHHHHHHHHTTC------SCEEEEEEECC--CCEEEECSS-----C-CSCCEECSSTTSHH
T ss_pred HHHHHHHHHCCCCCEEEEcHHHHHHHHHCCC------CeEEEEEeccc--EEEEEecCC-----C-CCCEEEecCCCCcH
Confidence 35788999999999998642 332 24555655432 235666542 4 6888986421 1
Q ss_pred H---HHHHHHhCCCCeEEeccCCCHHHHHHhhccCCccEEeeec
Q 026500 109 R---KSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLAL 149 (237)
Q Consensus 109 R---~aql~~~~pdl~v~~~iRGNV~TRL~KL~~ge~DaiILA~ 149 (237)
- +..|.+.--|++++ .+.-+-.....-|.+|+.||.++..
T Consensus 109 ~~ll~~~L~~~Gldv~~~-~~~~~~~~~~~al~~G~vDa~~~~e 151 (283)
T 3hn0_A 109 DILTRYYLGRQRLDYPLN-YAFNTAGEITQGILAGKVNRAVLGE 151 (283)
T ss_dssp HHHHHHHHHHHTCCCCEE-CSCCSHHHHHHHHHHTSCSEEEECT
T ss_pred HHHHHHHHHHcCCceEEE-EccCCHHHHHHHHHcCCCCEEEecc
Confidence 1 12223332288887 5543577788889999999999844
No 47
>2pfy_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.95A {Bordetella pertussis tohama I}
Probab=80.45 E-value=14 Score=31.82 Aligned_cols=133 Identities=12% Similarity=0.062 Sum_probs=77.9
Q ss_pred HHHHHHHhcCCccEEEeeCC------------CCCCCCC----------------------CCceeeeecCCCCCCeEEE
Q 026500 41 KEIDEALINSQIDIAVHSMK------------DVPTYLP----------------------EKTILPCNLQREDVRDAFI 86 (237)
Q Consensus 41 keLe~aLl~g~iDiAVHSlK------------DlP~~l~----------------------~gL~iaav~~R~dprD~LV 86 (237)
.++=+++..|.+|+++-+.= |+|.-.+ .|+.+.+...-. ++. +.
T Consensus 49 ~~~~e~v~~G~id~~~~~~~~~~~~~p~~~~~~lPfl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~-~~~-~~ 126 (301)
T 2pfy_A 49 PEVKRGVQQGVVQIGEVLVSALGNEDPLFEIDSVPFLASSFNESEKLWKATRPLLAQRLDKQGIVLVYGSPWP-PQG-IY 126 (301)
T ss_dssp GGHHHHHHHTSSSEEEEEGGGGTTTCGGGGGGGSTTTSCSHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECC-CCE-EE
T ss_pred HHHHHHHHCCCeeeehhhhhhhhccCcccccccCCcccCCHHHHHHHHHHhhHHHHHHHHHCCCEEEEeecCC-Ccc-ee
Confidence 46779999999999988732 5665332 366665543322 333 44
Q ss_pred eC-CCCCCccCCCCCeeecCChhHHHHHHHhCCCCeEEeccCCCHHHHHHhhccCCccEEeeecccccccCCCCcceeee
Q 026500 87 SL-SAASLAELPAGSIVGTASLRRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTENVTNIL 165 (237)
Q Consensus 87 ~~-~~~~l~~Lp~ga~IGTSS~RR~aql~~~~pdl~v~~~iRGNV~TRL~KL~~ge~DaiILA~AGL~RLgl~~~i~~~l 165 (237)
++ .-.+++|| +|.+|.|.+.=-...++.+ ....+ ++- ...=...|.+|..||..-....+.-.++.+...++.
T Consensus 127 ~~~pI~s~~Dl-kG~KiR~~~~~~~~~~~~l--Ga~pv-~~~--~~E~y~ALq~G~vDg~~~~~~~~~~~~~~ev~k~~~ 200 (301)
T 2pfy_A 127 TKKPVAALADL-KGTRFRAYSASTSHMAALM--GAVPT-TVQ--TPEVPQAFSTGVIDAMLTSPATGVDSQAWDYVKYYY 200 (301)
T ss_dssp ESSCCSSGGGG-TTCEEEECSHHHHHHHHHT--TSEEE-ECC--GGGHHHHHHTTSCSBEEECHHHHHHTTGGGTCCEEE
T ss_pred cCCCCCCHHHh-CCCEEeecChhHHHHHHHc--CCcce-ecc--HHHHHHHHhcceeeeEecCccccccccHHHHhhhhc
Confidence 43 33567887 7999998653222334443 46666 664 233334455899999988777776666654333332
Q ss_pred cCCCCCCCCCCceEEEEEecC
Q 026500 166 SVDDMLPAVAQGAIGIACRSN 186 (237)
Q Consensus 166 ~~~~~lPA~GQGalave~R~~ 186 (237)
... .......+.++++
T Consensus 201 ~~~-----~~~~~~~~~~n~~ 216 (301)
T 2pfy_A 201 DAQ-----AFIPQSFVIANKR 216 (301)
T ss_dssp ECC-----CCCCEEEEEEEHH
T ss_pred ccc-----cccceeeEEEcHH
Confidence 222 2233445666543
No 48
>4esw_A Pyrimidine biosynthesis enzyme THI13; thiamin pyrimidine biosynthesis, transferase; HET: CIT; 1.60A {Candida albicans} PDB: 4esx_A*
Probab=78.24 E-value=9.9 Score=32.85 Aligned_cols=113 Identities=13% Similarity=0.094 Sum_probs=63.2
Q ss_pred HHHHHHhcCCccEEEeeCCCCCCCCCCC--ceeeeecCCCCCCeEEEeCCC---CCCccCCCCCeeecCChhHHHHHHHh
Q 026500 42 EIDEALINSQIDIAVHSMKDVPTYLPEK--TILPCNLQREDVRDAFISLSA---ASLAELPAGSIVGTASLRRKSQILHR 116 (237)
Q Consensus 42 eLe~aLl~g~iDiAVHSlKDlP~~l~~g--L~iaav~~R~dprD~LV~~~~---~~l~~Lp~ga~IGTSS~RR~aql~~~ 116 (237)
..-++|.+|++|+++.+.=.+-.....| +++.+..-..++.-+++.++. +++++| +|-+||+...==...++..
T Consensus 50 ~~~~al~sG~~D~g~~~~~~~~~a~~~G~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~dL-kGK~ig~~~~~~~~~l~~~ 128 (342)
T 4esw_A 50 DVTELVGSGKVDMGLKAMVGTLAAKARGFPVTSIGSLLDEPFTGICYLEGSGITSDFQSL-KGKRIGYVGEFGKIQVDEL 128 (342)
T ss_dssp GHHHHHHHTSSSEEEEEHHHHHHHHHTTCCEEEEEEEECSCCEEEEEETTSSCCSSGGGG-TTCEEEESSSHHHHHHHHH
T ss_pred HHHHHHHcCCcCEEEecHHHHHHHHHCCCCeEEEEEeccCCcccccccccccccCCHHHh-CCCEEEecCCchHHHHHHH
Confidence 3568999999999987542111112223 333333444444444444322 346777 6889987543223333322
Q ss_pred -------CCCCeEEeccCCCHHHHHHhhccCCccEEeeecc--------cccccCCCC
Q 026500 117 -------YPSLKVMENFRGNVQTRLRKLNERVVQATLLALA--------GLKRLSMTE 159 (237)
Q Consensus 117 -------~pdl~v~~~iRGNV~TRL~KL~~ge~DaiILA~A--------GL~RLgl~~ 159 (237)
..+++++ ++-.+. ..-|.+|+.||.+.... ++.+.|...
T Consensus 129 L~~~Gl~~~dv~~v-~~~~~~---~~al~~G~vDa~~~~~p~~~~~~~~~~~~~g~~~ 182 (342)
T 4esw_A 129 TKHYGMTPDDYVAV-RCGMNV---AKYILEGTIDCGIGIECIQQVELEEALKEQGKDS 182 (342)
T ss_dssp HGGGTCCGGGSEEE-ECGGGH---HHHHHHTSSSEEEEETTTHHHHHHHHHHHTTCCG
T ss_pred HHHcCCChhheEEe-cCCHHH---HHHHHcCCCCEEEEeccchHHHHHHHHHhhCccc
Confidence 2356777 665443 35677899999987432 455555543
No 49
>1sw5_A Osmoprotection protein (PROX); binding-protein, compatible solutes, cation-PI interactions, classical hydrogen bonds, protein binding; 1.80A {Archaeoglobus fulgidus} SCOP: c.94.1.1 PDB: 1sw4_A 1sw1_A 1sw2_A 3mam_A*
Probab=78.08 E-value=6.4 Score=33.51 Aligned_cols=147 Identities=14% Similarity=0.108 Sum_probs=81.4
Q ss_pred HHHHHHHhcCCccEEEe--------eCCCCCCC--------------CCC--CceeeeecCCCCCCeEEEeC-------C
Q 026500 41 KEIDEALINSQIDIAVH--------SMKDVPTY--------------LPE--KTILPCNLQREDVRDAFISL-------S 89 (237)
Q Consensus 41 keLe~aLl~g~iDiAVH--------SlKDlP~~--------------l~~--gL~iaav~~R~dprD~LV~~-------~ 89 (237)
..+-+||.+|+||+++- =++..|.. +++ ++...+... .+..+.|+.+ .
T Consensus 46 ~~~~~al~~G~iD~~~eytGt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~~~l~V~~~~a~~~~ 124 (275)
T 1sw5_A 46 LVNYEALKRNDIQLYVEYTGTAYNVILRKQPPELWDQQYIFDEVKKGLLEADGVVVAAKLG-FRDDYALAVRADWAEENG 124 (275)
T ss_dssp HHHHHHHHHTSSSEEEEEHHHHHHTTSCCCCCSSCCHHHHHHHHHHHHHHHHCCEEEEEEE-EECCEEEEEEHHHHHHHT
T ss_pred HHHHHHHHcCCCcEEEeehhhHHHHhcCCCCccCCCHHHHHHHHHHHhhhcCCeEEeccCC-CCCeeEEEEeHHHHHHcC
Confidence 45678999999999983 23443331 111 677666552 3456777765 3
Q ss_pred CCCCccCCCC---CeeecCCh--hHH----HHHHHhCCCC-eEEeccCCCHHHHHHhhccCCccEEeeecc--cccccCC
Q 026500 90 AASLAELPAG---SIVGTASL--RRK----SQILHRYPSL-KVMENFRGNVQTRLRKLNERVVQATLLALA--GLKRLSM 157 (237)
Q Consensus 90 ~~~l~~Lp~g---a~IGTSS~--RR~----aql~~~~pdl-~v~~~iRGNV~TRL~KL~~ge~DaiILA~A--GL~RLgl 157 (237)
-++++||..- .++|+++- -|. ..++.+-=+. +++ ++ ......+.+.+|+.|++..-.- .+...++
T Consensus 125 i~si~DL~g~~~~~~~g~~~~~~~~~~g~~~~~~~yGl~~~~~~-~~--~~~~~~~Al~~g~vd~~~~~~p~~~~~~~~l 201 (275)
T 1sw5_A 125 VEKISDLAEFADQLVFGSDPEFASRPDGLPQIKKVYGFEFKEVK-QM--EPTLMYEAIKNKQVDVIPAYTTDSRVDLFNL 201 (275)
T ss_dssp CCBGGGGTTTGGGCEEEECHHHHHSTTSHHHHHHHHTCCCSEEE-EC--CGGGHHHHHHTTSCSEEEEETTCHHHHHTTE
T ss_pred CCcHHHHHhhhcceEeccCcccccccchHHHHHHhcCCCccccc-CC--CHHHHHHHHHcCCCeEEEEeCCCcchhcCCe
Confidence 4678888543 37887753 110 1222221122 454 55 3456788899999999987322 2333332
Q ss_pred CCcceeeecCCCCCCCCCCceEEEEEecCc---hhhhhhhcccc
Q 026500 158 TENVTNILSVDDMLPAVAQGAIGIACRSND---EKMVPFTTHSQ 198 (237)
Q Consensus 158 ~~~i~~~l~~~~~lPA~GQGalave~R~~d---~~~~~~l~~~~ 198 (237)
..+-++..+.|+ .-+...+|++- +++.++|+.+.
T Consensus 202 ----~~L~d~~~~~~~---~~~~~v~~~~~~~~P~~~~~l~~l~ 238 (275)
T 1sw5_A 202 ----KILEDDKGALPP---YDAIIIVNGNTAKDEKLISVLKLLE 238 (275)
T ss_dssp ----EECBCTTCCSCC---CEEEEEECTTGGGCHHHHHHHHTTT
T ss_pred ----EEccCCcccCCc---cceeeeeehhhccChHHHHHHHHHH
Confidence 122344555554 23345666542 45666666554
No 50
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Probab=74.88 E-value=3 Score=36.76 Aligned_cols=112 Identities=13% Similarity=0.051 Sum_probs=63.0
Q ss_pred HHHHHHHhcCCccEEEeeCCC-CCCCCCCCceeeeecC--CCCCC--eEEEeCCC---CCCccCC---CCCeeec-----
Q 026500 41 KEIDEALINSQIDIAVHSMKD-VPTYLPEKTILPCNLQ--REDVR--DAFISLSA---ASLAELP---AGSIVGT----- 104 (237)
Q Consensus 41 keLe~aLl~g~iDiAVHSlKD-lP~~l~~gL~iaav~~--R~dpr--D~LV~~~~---~~l~~Lp---~ga~IGT----- 104 (237)
.++.++|.+|++|+++-+.-. +......+..+.+.+. ..+|. -+||.+++ ++++||- .|.+||.
T Consensus 57 ~~~i~aL~~G~vDia~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~y~~~lvv~~ds~i~sl~DL~~~~kgk~va~~~~gs 136 (321)
T 3p7i_A 57 AGIIQGMRFNKVDIAWYGNLSAMEAVDRANGQVFAQTVAADGSPGYWSVLIVNKDSPINNLNDLLAKRKDLTFGNGDPNS 136 (321)
T ss_dssp HHHHHHHHTTSCSEEECCHHHHHHHHHHSCEEEEEEEEETTCCSSBCEEEEEETTCSCCSHHHHHHTGGGCEEEECCTTC
T ss_pred HHHHHHHHcCCCcEEEEChHHHHHHHHhcCCEEEEEEeccCCCcceEEEEEEECCCCCCCHHHHHhhcCCCEEEeCCCCc
Confidence 478899999999999854210 1111123454444432 22333 36676644 4567771 4567762
Q ss_pred CChhHHHH--H-HHhC--CC-CeEEeccCCCHHHHHHhhccCCccEEeeecccccc
Q 026500 105 ASLRRKSQ--I-LHRY--PS-LKVMENFRGNVQTRLRKLNERVVQATLLALAGLKR 154 (237)
Q Consensus 105 SS~RR~aq--l-~~~~--pd-l~v~~~iRGNV~TRL~KL~~ge~DaiILA~AGL~R 154 (237)
+|---..+ + ...- |+ ++.+ ..|+-+.-+.-|.+|++|+.+.....+..
T Consensus 137 ts~~l~~~~~l~~~~Gi~~~~~~~v--~~~~~~~a~~al~~G~vDa~~~~~~~~~~ 190 (321)
T 3p7i_A 137 TSGFLVPGYYVFAKNNISASDFKRT--VNAGHETNALAVANKQVDVATNNTENLDK 190 (321)
T ss_dssp TTTTHHHHHHTTGGGTCCGGGSSEE--EECCHHHHHHHHHTTSSSEEEEEHHHHHT
T ss_pred cHHHHHHHHHHHHHcCCChhHceee--ecCCHHHHHHHHHCCCceEEEechHHHHH
Confidence 22111111 2 2221 21 4444 36788888999999999999986554443
No 51
>1p99_A Hypothetical protein PG110; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Staphylococcus aureus subsp} SCOP: c.94.1.1
Probab=72.83 E-value=0.62 Score=41.21 Aligned_cols=71 Identities=15% Similarity=0.078 Sum_probs=40.4
Q ss_pred HHHHHHhcCCccEEE--eeC--CCCCCCC-CCCceeeeecCCCCCCeEEEeCCCCCCccCCCCCeeecC----ChhHHHH
Q 026500 42 EIDEALINSQIDIAV--HSM--KDVPTYL-PEKTILPCNLQREDVRDAFISLSAASLAELPAGSIVGTA----SLRRKSQ 112 (237)
Q Consensus 42 eLe~aLl~g~iDiAV--HSl--KDlP~~l-~~gL~iaav~~R~dprD~LV~~~~~~l~~Lp~ga~IGTS----S~RR~aq 112 (237)
+.-+||.+|++|++. |.. ...-..- ...++..+....+ | ..+.+.+.++++|||+|.+||.+ +-=|..+
T Consensus 77 ~~~~AL~~G~iD~~~~~~~~~l~~~~~~~~g~~l~~v~~~~~~-p-~g~ys~~iksl~DL~~Gk~IAip~~~s~~~~~l~ 154 (295)
T 1p99_A 77 LPNKALNDGDIDMNAFQHFAFLDQYKKAHKGTKISALSTTVLA-P-LGIYSDKIKDVKKVKDGAKVVIPNDVSNQARALK 154 (295)
T ss_dssp SHHHHHHTTSSSEEEEEEHHHHHHHHHHCTTCCEEEEEEEEEC-C-CEEECSSCSCGGGCCTTCEEEEECSHHHHHHHHH
T ss_pred HHHHHHHcCCCCEEccCCHHHHHHHHHhcCCCCEEEEEeeccc-c-ceeecCCCCChHHcCCCCEEEecCCCcHHHHHHH
Confidence 467899999999997 421 0000000 1123323222222 2 35666778899999999999653 4444444
Q ss_pred HH
Q 026500 113 IL 114 (237)
Q Consensus 113 l~ 114 (237)
++
T Consensus 155 lL 156 (295)
T 1p99_A 155 LL 156 (295)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 52
>3gxa_A Outer membrane lipoprotein GNA1946; periplasmic, L-methionine bingding, protein binding; 2.25A {Neisseria meningitidis}
Probab=71.85 E-value=0.91 Score=40.73 Aligned_cols=144 Identities=17% Similarity=0.175 Sum_probs=78.9
Q ss_pred HHHHHHhcCCccEEEeeCCCCCCC----CCCCceeeeecCCCCCCeEEEeCCCCCCccCCCCCeeecCC----hhHHHHH
Q 026500 42 EIDEALINSQIDIAVHSMKDVPTY----LPEKTILPCNLQREDVRDAFISLSAASLAELPAGSIVGTAS----LRRKSQI 113 (237)
Q Consensus 42 eLe~aLl~g~iDiAVHSlKDlP~~----l~~gL~iaav~~R~dprD~LV~~~~~~l~~Lp~ga~IGTSS----~RR~aql 113 (237)
..-.||.+|+||+..-- ..|.- -..|..+.++-.-....=.+.|++.+++++||+|++|+... .=|.-+|
T Consensus 63 ~pN~AL~~G~IDaN~fQ--h~pyL~~~nk~~g~~Lv~v~~~~~~p~glYS~kiksl~dL~~Ga~IAIPnDptN~~RaL~l 140 (275)
T 3gxa_A 63 RPNLALAEGELDINVFQ--HKPYLDDFKKEHNLDITEVFQVPTAPLGLYPGKLKSLEEVKDGSTVSAPNDPSNFARVLVM 140 (275)
T ss_dssp HHHHHHHHTSCSEEEEE--CHHHHHHHHHHHTCCEEEEEECCBCCCEEEESSCCCGGGCCTTCEEEEECSHHHHHHHHHH
T ss_pred hHHHHHHcCCCCeeecC--CHHHHHHHHHHcCCCEEEEeeccccceEEecCCCCCHHHcCCCCEEEecCCccHHHHHHHH
Confidence 56789999999998631 11110 01233344433322223467788999999999999999654 3455555
Q ss_pred HHhC------C-----------------CCeEEeccCCCHHHHHHhhccCCccEEee-----ecccccccCCCCcceeee
Q 026500 114 LHRY------P-----------------SLKVMENFRGNVQTRLRKLNERVVQATLL-----ALAGLKRLSMTENVTNIL 165 (237)
Q Consensus 114 ~~~~------p-----------------dl~v~~~iRGNV~TRL~KL~~ge~DaiIL-----A~AGL~RLgl~~~i~~~l 165 (237)
+..- + +++|+ ++-..---| -| .++|+.|+ ..|||. . .+.+.+
T Consensus 141 L~~aGLIkLk~~~~~~~~T~~DI~eNpk~lk~~-eldaaql~r--~l--~dvD~avIn~nya~~agl~-~--~dal~E-- 210 (275)
T 3gxa_A 141 LDELGWIKLKDGINPLTASKADIAENLKNIKIV-ELEAAQLPR--SR--ADVDFAVVNGNYAISSGMK-L--TEALFQ-- 210 (275)
T ss_dssp HHHTTSSEECTTCCGGGCCGGGEEECTTCCEEE-EECGGGHHH--HT--TTSSEEEECHHHHHHTTCC-G--GGCSEE--
T ss_pred HHHCCCEEecCCCCCCcCCHHHHhcCCCCCEEE-EeCHHHHhh--hc--cccCEEEEchhHHHHcCCC-c--ccceec--
Confidence 4421 1 24555 444322222 23 35888876 346776 3 233321
Q ss_pred cCCCCCCCCCCceEEEEEec---Cchhhhhhhccccccccc
Q 026500 166 SVDDMLPAVAQGAIGIACRS---NDEKMVPFTTHSQASILN 203 (237)
Q Consensus 166 ~~~~~lPA~GQGalave~R~---~d~~~~~~l~~~~~~~~~ 203 (237)
... .+=+..|.+|+ +++.+..+.+.+++...+
T Consensus 211 -~~~-----~~y~Nvivvr~~d~d~~~ik~lv~a~~S~evk 245 (275)
T 3gxa_A 211 -EPS-----FAYVNWSAVKTADKDSQWLKDVTEAYNSDAFK 245 (275)
T ss_dssp -CCC-----CTTCCEEEEEGGGTTCHHHHHHHHHTTSHHHH
T ss_pred -CCC-----CCcEEEEEEeccccCCHHHHHHHHHHcCHHHH
Confidence 111 12233455665 445677777777665443
No 53
>2i49_A Bicarbonate transporter; alpha-beta protein, C-clamp, ABC transporter, periplasmic SO binding protein, bicarbonate-binding protein; 1.35A {Synechocystis SP} PDB: 2i48_A 2i4b_A 2i4c_A
Probab=70.93 E-value=5 Score=36.92 Aligned_cols=101 Identities=7% Similarity=0.080 Sum_probs=62.4
Q ss_pred HHHHHHhcCC----ccEEEeeCCCCCCCC---------CCCceeeeecCCCCCCeEEEeCCC---CC-----------Cc
Q 026500 42 EIDEALINSQ----IDIAVHSMKDVPTYL---------PEKTILPCNLQREDVRDAFISLSA---AS-----------LA 94 (237)
Q Consensus 42 eLe~aLl~g~----iDiAVHSlKDlP~~l---------~~gL~iaav~~R~dprD~LV~~~~---~~-----------l~ 94 (237)
++-++|.+|+ +|+++- +-.+|... ...+.+.+...+. . .+++.++. .. ++
T Consensus 78 ~~~~al~~G~~~~~~D~a~~-~~~~~~~~~~g~~~~~~g~~~~~v~~~~~~-g-~~i~v~~~~~~s~i~~~~~~lk~~i~ 154 (429)
T 2i49_A 78 SARDNVTIGSQGGGIDGGQW-QMPMPHLITEGIITNGNKVPMYVLAQLITQ-G-NGIAVAPMHEGKGVNLDITKAADYIK 154 (429)
T ss_dssp HHHHHHHHTGGGTSCSEEEE-CTTHHHHHHTTTTTTTCCCCEEEEEECCBC-C-EEEEECGGGTTTTCSSCCGGGHHHHH
T ss_pred HHHHHHHcCCCCCceeEEEe-ccHHHHHHHcCccccCCCCCEEEEEEeccC-C-cEEEEecchhhcccccchHHHHHHHH
Confidence 4778999999 999965 33454321 2345565655553 3 55554432 11 35
Q ss_pred cC-C-CCC--eeecC---ChhH---HHHHHH--hCC--CCeEEeccCCCHHHHHHhhccCCccEEeee
Q 026500 95 EL-P-AGS--IVGTA---SLRR---KSQILH--RYP--SLKVMENFRGNVQTRLRKLNERVVQATLLA 148 (237)
Q Consensus 95 ~L-p-~ga--~IGTS---S~RR---~aql~~--~~p--dl~v~~~iRGNV~TRL~KL~~ge~DaiILA 148 (237)
+| . .|- +||++ |.-. +..|.. +-| |++++ .+ +....+.-|.+|+.||.++.
T Consensus 155 dL~k~~GK~~~Iav~~~gs~~~~~l~~~L~~~Gl~p~~DV~~v-~~--~~~~~~~aL~~G~iDa~~~~ 219 (429)
T 2i49_A 155 GFNKTNGRKFKAAHTFPNVNQDFWIRYWFAAGGVDPDTDIDLL-AV--PPAETVQGMRNGTMDAFSTG 219 (429)
T ss_dssp THHHHHSSCCEEEESSTTSHHHHHHHHHHHHTTCCTTTTSEEE-EC--CHHHHHHHHHHTCCCEEEEE
T ss_pred HHHHhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCCCCCcEEEE-EC--ChHHHHHHHHcCCccEEEec
Confidence 66 3 266 89875 3211 112222 345 68888 77 46888999999999999885
No 54
>4ib2_A Putative lipoprotein; putative methionine-bindning, NLPA lipoprotein, PF03180 FAMI structural genomics, joint center for structural genomics; 1.76A {Ruminococcus gnavus}
Probab=67.49 E-value=0.79 Score=40.51 Aligned_cols=72 Identities=15% Similarity=0.084 Sum_probs=43.2
Q ss_pred HHHHHHhcCCccEEEeeCCCCCCC----CCCCceeeeecCCCCCCeEEEeCCCCCCccCCCCCeeecCCh----hHHHHH
Q 026500 42 EIDEALINSQIDIAVHSMKDVPTY----LPEKTILPCNLQREDVRDAFISLSAASLAELPAGSIVGTASL----RRKSQI 113 (237)
Q Consensus 42 eLe~aLl~g~iDiAVHSlKDlP~~----l~~gL~iaav~~R~dprD~LV~~~~~~l~~Lp~ga~IGTSS~----RR~aql 113 (237)
....||.+|+||+..---. |.- -..|..+.++-.-...-=.+.|++.+++++||+|++|+.+.- =|.-+|
T Consensus 50 ~pN~AL~~G~iDaN~fQh~--pyL~~~~k~~g~~lv~v~~~~~~p~glyS~kiksl~dLk~Ga~IAipnd~sN~~RaL~l 127 (252)
T 4ib2_A 50 QPNEVVESGEFDANYFQHV--PYLESFNEEKGTHLVDAGDIHYEPFGIYPGTKKSLDEISEGDKIAVPNDTTNEARALLL 127 (252)
T ss_dssp HHHHHHHTTSSSEEEEEEH--HHHHHHHHHHCCCEEEEEEEEECCCEEEESSCSCGGGCCTTCEEEEECSHHHHHHHHHH
T ss_pred hHHHHHHcCCcCeeecCCH--HHHHHHHHHCCCCEEEEeeccccceEeecCCcCCHHHcCCCCEEEeeCCCCHHHHHHHH
Confidence 5678999999999754221 100 012333333322111123567888999999999999997543 455455
Q ss_pred HH
Q 026500 114 LH 115 (237)
Q Consensus 114 ~~ 115 (237)
+.
T Consensus 128 L~ 129 (252)
T 4ib2_A 128 LQ 129 (252)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 55
>3oxn_A Putative transcriptional regulator, LYSR family; structural genomics, PSI-2, protein structure initiative; 2.70A {Vibrio parahaemolyticus}
Probab=64.39 E-value=8.2 Score=30.34 Aligned_cols=49 Identities=8% Similarity=-0.004 Sum_probs=40.3
Q ss_pred CeeecCCh-------hHHHHHHHhCCCCeEEeccCCCHHHHHHhhccCCccEEeeec
Q 026500 100 SIVGTASL-------RRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLAL 149 (237)
Q Consensus 100 a~IGTSS~-------RR~aql~~~~pdl~v~~~iRGNV~TRL~KL~~ge~DaiILA~ 149 (237)
-+||+++. ..-.+++..+|++++. -..++-+.-++.|.+|++|..|...
T Consensus 21 l~Ig~~~~~~~~~l~~~l~~f~~~~P~i~l~-~~~~~~~~~~~~l~~g~~Dl~i~~~ 76 (241)
T 3oxn_A 21 FTIATTDYAMQTILPFALPRIYQEAPNVSFN-FLPLQHDRLSDQLTYEGADLAICRP 76 (241)
T ss_dssp EEEEECSHHHHHTHHHHHHHHHHHCTTCEEE-EEECCGGGHHHHHHTSCCSEEEECC
T ss_pred EEEEechHHHHHHHHHHHHHHHHHCCCCEEE-EEECCcccHHHHHHcCCCCEEEecC
Confidence 48888764 4567888899999998 7778888888999999999998753
No 56
>2hxr_A HTH-type transcriptional regulator CYNR; CYNR transcriptional regulator LYSR struc genomics, PSI-2, protein structure initiative; 2.05A {Escherichia coli} PDB: 3hfu_A
Probab=62.93 E-value=11 Score=29.45 Aligned_cols=48 Identities=10% Similarity=0.047 Sum_probs=38.6
Q ss_pred CeeecCC-------hhHHHHHHHhCCCCeEEeccCCCHHHHHHhhccCCccEEeee
Q 026500 100 SIVGTAS-------LRRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLA 148 (237)
Q Consensus 100 a~IGTSS-------~RR~aql~~~~pdl~v~~~iRGNV~TRL~KL~~ge~DaiILA 148 (237)
-+||+++ ++.-..++..+|++++. -.-++-+.-++.|.+|++|..|..
T Consensus 32 l~Ig~~~~~~~~~l~~~l~~f~~~~P~v~l~-~~~~~~~~~~~~l~~g~~Dl~i~~ 86 (238)
T 2hxr_A 32 LRIAVTPTFTSYFIGPLMADFYARYPSITLQ-LQEMSQEKIEDMLCRDELDVGIAF 86 (238)
T ss_dssp EEEEECHHHHTTTHHHHHHHHHHHCTTSCEE-EEECCHHHHHHHHHTTSCSEEEEE
T ss_pred EEEeechhhHHHHHHHHHHHHHHhCCCcEEE-EEECCHHHHHHHHHcCCCcEEEEc
Confidence 3788764 35567888899999997 777887877888999999988764
No 57
>4ab5_A Transcriptional regulator, LYSR family; transcription factors; 2.51A {Neisseria meningitidis serogroup B} PDB: 4ab6_A
Probab=60.56 E-value=5.6 Score=30.38 Aligned_cols=48 Identities=6% Similarity=0.102 Sum_probs=37.9
Q ss_pred eeecCC-------hhHHHHHHHhCCCCeEEeccCCCHHHHHHhhccCCccEEeeec
Q 026500 101 IVGTAS-------LRRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLAL 149 (237)
Q Consensus 101 ~IGTSS-------~RR~aql~~~~pdl~v~~~iRGNV~TRL~KL~~ge~DaiILA~ 149 (237)
+||+++ .+--.+++..+|++++. -.-|+-+.-++.|.+|++|..|...
T Consensus 11 ~Ig~~~~~~~~~l~~~l~~f~~~~P~i~i~-i~~~~~~~~~~~l~~g~~Di~i~~~ 65 (222)
T 4ab5_A 11 RIAVECHTCFDWLMPAMGEFRPMWPQVELD-IVSGFQADPVGLLLQHRADLAIVSE 65 (222)
T ss_dssp EEECCCTTTHHHHHHHHHHHHHHSTTEEEE-EECCCCSCTHHHHHTTSCSEEEESC
T ss_pred EEEEehHHHHHHHHHHHHHHHHHCCCcEEE-EecCCHHHHHHHHHcCCcCEEEecC
Confidence 677764 34457788899999998 7777777778889999999888743
No 58
>2fyi_A HTH-type transcriptional regulator CBL; Lys-R family, cofactor-binding DO cysteine biosynthesis; 2.80A {Escherichia coli K12} SCOP: c.94.1.1
Probab=60.30 E-value=11 Score=29.58 Aligned_cols=48 Identities=10% Similarity=0.133 Sum_probs=38.4
Q ss_pred CeeecCCh-------hHHHHHHHhCCCCeEEeccCCCHHHHHHhhccCCccEEeee
Q 026500 100 SIVGTASL-------RRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLA 148 (237)
Q Consensus 100 a~IGTSS~-------RR~aql~~~~pdl~v~~~iRGNV~TRL~KL~~ge~DaiILA 148 (237)
-+||+++. +--+++++.+|++++. -.-++-++-+..|.+|++|..|..
T Consensus 16 lrIg~~~~~~~~~l~~~l~~f~~~~P~v~l~-l~~~~~~~~~~~l~~g~~Dl~i~~ 70 (228)
T 2fyi_A 16 LTIATTHTQARYSLPEVIKAFRELFPEVRLE-LIQGTPQEIATLLQNGEADIGIAS 70 (228)
T ss_dssp EEEEECHHHHHHTHHHHHHHHHHHCTTEEEE-EEECCHHHHHHHHHHTSCSEEEES
T ss_pred EEEeeccchHHHHHHHHHHHHHHHCCCcEEE-EEeCCHHHHHHHHHcCCccEEEEe
Confidence 37888753 3346778899999997 777888888899999999988764
No 59
>1twy_A ABC transporter, periplasmic substrate-binding PR; nysgxrc target, structural genomics, protei structure initiative, PSI; 1.65A {Vibrio cholerae o1 biovar eltor} SCOP: c.94.1.1
Probab=57.80 E-value=16 Score=29.39 Aligned_cols=49 Identities=8% Similarity=0.013 Sum_probs=38.2
Q ss_pred CeeecCChh------HHHHHHHhCCCCeEEeccCCCHHHHHHhhccCCccEEeeec
Q 026500 100 SIVGTASLR------RKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLAL 149 (237)
Q Consensus 100 a~IGTSS~R------R~aql~~~~pdl~v~~~iRGNV~TRL~KL~~ge~DaiILA~ 149 (237)
-+||+++.- -..++.+.+|++++. -..++-..-+++|.+|++|..|...
T Consensus 30 l~Ig~~~~~~~~l~~~l~~f~~~~P~i~v~-i~~~~~~~~~~~l~~g~~Di~i~~~ 84 (290)
T 1twy_A 30 ITISGSTSVARIMDVLAEKYNQQHPETYVA-VQGVGSTAGISLLKKGVADIAMTSR 84 (290)
T ss_dssp EEEEECHHHHHHHHHHHHHHHHHCTTCEEE-EEESCHHHHHHHHHTTSCSEEEESS
T ss_pred EEEecCcchHHHHHHHHHHHHhhCCCceEE-EEecCcHHHHHHHhcCCCcEEEecC
Confidence 378887542 235566789999997 7778888889999999999888654
No 60
>2h9b_A HTH-type transcriptional regulator BENM; LTTR, transcriptional activator, LYSR-type transcripti regulator; 1.80A {Acinetobacter SP} PDB: 2h99_A 3k1m_A 3k1n_A 3k1p_A 2f7a_A* 2f6p_A 2f78_A 2f6g_A* 2f8d_A 2f97_A*
Probab=57.25 E-value=17 Score=30.20 Aligned_cols=40 Identities=15% Similarity=0.165 Sum_probs=34.0
Q ss_pred hHHHHHHHhCCCCeEEeccCCCHHHHHHhhccCCccEEeee
Q 026500 108 RRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLA 148 (237)
Q Consensus 108 RR~aql~~~~pdl~v~~~iRGNV~TRL~KL~~ge~DaiILA 148 (237)
..-.+++..+|++++. -.-++-+.-+..|.+|++|..|..
T Consensus 107 ~~l~~f~~~~P~v~i~-l~~~~~~~~~~~l~~g~~Dlai~~ 146 (312)
T 2h9b_A 107 RIIHLYRQAHPNLRIE-LYEMGTKAQTEALKEGRIDAGFGR 146 (312)
T ss_dssp HHHHHHHHTCTTCEEE-EEECCHHHHHHHHHTTSCSEEEES
T ss_pred HHHHHHHHHCCCcEEE-EEeCCHHHHHHHHHcCCCCEEEEe
Confidence 4457788899999998 777888889999999999988864
No 61
>2zzv_A ABC transporter, solute-binding protein; periplasmic substrate binding protein, calcium, lactate, trap transporter, transport protein; 1.40A {Thermus thermophilus} PDB: 2zzw_A 2zzx_A
Probab=54.97 E-value=97 Score=27.17 Aligned_cols=109 Identities=8% Similarity=-0.035 Sum_probs=63.2
Q ss_pred HHHHHHHhcCCccEEEeeCC-------------CCCCCCC------------------------CCceeeeecCCCCCCe
Q 026500 41 KEIDEALINSQIDIAVHSMK-------------DVPTYLP------------------------EKTILPCNLQREDVRD 83 (237)
Q Consensus 41 keLe~aLl~g~iDiAVHSlK-------------DlP~~l~------------------------~gL~iaav~~R~dprD 83 (237)
.++=++|..|.+|+++-+.= ++|.-.+ .|+.+.+ .. .-++.
T Consensus 81 ~~~~e~v~~G~id~~~~~~~~~~~~~p~~~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~-~~-~g~~~ 158 (361)
T 2zzv_A 81 FDMFDAVKTGVLDGMNPFTLYWAGRMPVTAFLSSYALGLDRPDQWETWFYSLGGLDIARRAFAEQGLFYVG-PV-QHDLN 158 (361)
T ss_dssp GGHHHHHHHTSSSEEECBGGGGTTTCGGGGGSSCCTTSCCSHHHHHHHHHTSSHHHHHHHHHHHTTEEEEE-EE-CCCCC
T ss_pred HHHHHHHHcCceeEEEeccccccccCcHHHHHhcCCCCcCCHHHHHHHHHcCchHHHHHHHHHHCCcEEec-cc-CCccc
Confidence 46778999999999987642 2554321 1333333 11 11233
Q ss_pred EEEeC-CCCCCccCCCCCeeecCChhHHHHHHHhCCCCeEEeccCCCHHHHHHhhccCCccEEeeecccc-cccCC
Q 026500 84 AFISL-SAASLAELPAGSIVGTASLRRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGL-KRLSM 157 (237)
Q Consensus 84 ~LV~~-~~~~l~~Lp~ga~IGTSS~RR~aql~~~~pdl~v~~~iRGNV~TRL~KL~~ge~DaiILA~AGL-~RLgl 157 (237)
.+.+. .-.+++|| +|.+|.|.+.=-...++.+ ....+ ++- ...=..-|.+|..||.......+ .-.++
T Consensus 159 ~~~~~~pI~s~~DL-kG~kirv~~~~~~~~~~~l--Ga~pv-~~~--~~e~~~ALq~G~VDg~~~~~~~~~~~~~~ 228 (361)
T 2zzv_A 159 IIHSKKPIRRFEDF-KGVKLRVPGGMIAEVFAAA--GASTV-LLP--GGEVYPALERGVIDAADFVGPAVNYNLGF 228 (361)
T ss_dssp CEEESSCCCSGGGG-TTCEEECCSHHHHHHHHHT--TCEEE-CCC--GGGHHHHHHTTSCSEEECSCHHHHHHTTH
T ss_pred cceeCCCcCChHHh-CCCEEeecCHHHHHHHHHc--CCeee-ecC--hHHHHHHHHcCCcceeecCCcchhhhcCh
Confidence 33332 33567888 7999999872112233333 56666 663 34445667799999998655544 34444
No 62
>2ql3_A Probable transcriptional regulator, LYSR family P; APC7314, rhodococcus RHA1, structural genomics, PSI-2; HET: MSE; 2.05A {Rhodococcus SP}
Probab=53.74 E-value=16 Score=27.65 Aligned_cols=40 Identities=10% Similarity=0.055 Sum_probs=33.7
Q ss_pred hHHHHHHHhCCCCeEEeccCCCHHHHHHhhccCCccEEeee
Q 026500 108 RRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLA 148 (237)
Q Consensus 108 RR~aql~~~~pdl~v~~~iRGNV~TRL~KL~~ge~DaiILA 148 (237)
+.-+++++.+|++++. -.-++-..-+..|.+|++|..|..
T Consensus 22 ~~l~~f~~~~P~i~i~-l~~~~~~~l~~~l~~g~~Dl~i~~ 61 (209)
T 2ql3_A 22 SMLYAFTAEYPRASVE-FREDTQNRLRTQLEGGELDVAIVY 61 (209)
T ss_dssp HHHHHHHHHCTTEEEE-EEECCHHHHHHHHHTTSCSEEEEE
T ss_pred HHHHHHHHHCCCceEE-EEECcHHHHHHHHHcCCccEEEEe
Confidence 5567888999999997 777888878889999999987764
No 63
>2vpn_A Periplasmic substrate binding protein; ectoine, hydroxyectoine, trap-transporter, periplasmic binding protein, transport; HET: 4CS; 1.55A {Halomonas elongata} PDB: 2vpo_A* 3gyy_A
Probab=53.56 E-value=49 Score=28.57 Aligned_cols=112 Identities=12% Similarity=0.030 Sum_probs=69.8
Q ss_pred HHHHHHHhcCCccEEEeeC------------CCCCCCCCC--------------------------CceeeeecCCCCCC
Q 026500 41 KEIDEALINSQIDIAVHSM------------KDVPTYLPE--------------------------KTILPCNLQREDVR 82 (237)
Q Consensus 41 keLe~aLl~g~iDiAVHSl------------KDlP~~l~~--------------------------gL~iaav~~R~dpr 82 (237)
.|+=+++..|.+|+++-+. =|+|.-.++ |+.+.++... .++
T Consensus 46 ~~~~e~v~~G~id~~~~~~~~~~~~~p~~~~~~lPfl~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~~~~~-g~~ 124 (316)
T 2vpn_A 46 DDIMEQTQNGILQFVNQSPGFTGSLIPSAQIFFIPYLMPTDMDTVLEFFDESKAINEMFPKLYAEHGLELLKMYPE-GEM 124 (316)
T ss_dssp -CHHHHHHTTSCSEEEECHHHHHHHSGGGGGGGSTTCSCSSHHHHHHHHHHCHHHHTHHHHHHHTTTEEEEEEEEE-EEE
T ss_pred HHHHHHHhCCCceEEeecchhhhccCcchhheecCeecCCHHHHHHHHHcCchHHHHHHHHHHHHcCCEEEEeecC-Cce
Confidence 5677999999999998762 167765444 4555544421 122
Q ss_pred eEEEeC-CCCCCccCCCCCeeec-CChhHHHHHHHhCCCCeEEeccC-CCHHHHHHhhccCCccEEeeecccccccCCCC
Q 026500 83 DAFISL-SAASLAELPAGSIVGT-ASLRRKSQILHRYPSLKVMENFR-GNVQTRLRKLNERVVQATLLALAGLKRLSMTE 159 (237)
Q Consensus 83 D~LV~~-~~~~l~~Lp~ga~IGT-SS~RR~aql~~~~pdl~v~~~iR-GNV~TRL~KL~~ge~DaiILA~AGL~RLgl~~ 159 (237)
.+.+. .-.+++|| +|.+|.| .|.=-...++.+ ....+ ++- +.|-|- |.+|..||.......+.-+++.+
T Consensus 125 -~~~~~~pI~s~~Dl-kG~KiR~~~~~~~~~~~~~l--Ga~pv-~m~~~Evy~A---Lq~G~VDg~~~~~~~~~~~~~~e 196 (316)
T 2vpn_A 125 -VVTADEPITSPEDF-DNKKIRTMTNPLLAETYKAF--GATPT-PLPWGEVYGG---LQTGIIDGQENPIFWIESGGLYE 196 (316)
T ss_dssp -EEEESSCCCSGGGG-TTCEEEECSCHHHHHHHHHH--TCEEE-ECCGGGHHHH---HHHTSCSEEEEEHHHHHHTTGGG
T ss_pred -EEecCCCCCChHHh-CCCEEEeCCCHHHHHHHHHc--CCeee-ecCHHHHHHH---HHcCCcceeeCCHHHHHhcCHHH
Confidence 23343 33567787 7999988 343223445554 36666 554 345554 45799999998888877777654
Q ss_pred cc
Q 026500 160 NV 161 (237)
Q Consensus 160 ~i 161 (237)
..
T Consensus 197 v~ 198 (316)
T 2vpn_A 197 VS 198 (316)
T ss_dssp TC
T ss_pred hh
Confidence 43
No 64
>1i6a_A OXYR, hydrogen peroxide-inducible genes activator; OXYR regulatory domain, oxidized form, transcription; 2.30A {Escherichia coli} SCOP: c.94.1.1 PDB: 1i69_A
Probab=53.28 E-value=12 Score=28.91 Aligned_cols=47 Identities=17% Similarity=0.297 Sum_probs=36.9
Q ss_pred eeecCCh-------hHHHHHHHhCCCCeEEeccCCCHHHHHHhhccCCccEEeee
Q 026500 101 IVGTASL-------RRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLA 148 (237)
Q Consensus 101 ~IGTSS~-------RR~aql~~~~pdl~v~~~iRGNV~TRL~KL~~ge~DaiILA 148 (237)
+||+++. .--+++++.+|++++. -..++-+.-++.|.+|++|..|..
T Consensus 8 rIg~~~~~~~~~l~~~l~~f~~~~P~v~l~-l~~~~~~~~~~~l~~g~~Dl~i~~ 61 (219)
T 1i6a_A 8 HIGLIPTVGPYLLPHIIPMLHQTFPKLEMY-LHEAQTHQLLAQLDSGKLDAVILA 61 (219)
T ss_dssp EEEECTTTHHHHHHHHHHHHHHHCTTEEEE-EEECCHHHHHHHHHHTSCSEEEEE
T ss_pred EEEeccchhhhhhhHHHHHHHHHCCCeEEE-EEECChHHHHHHHHcCCeeEEEec
Confidence 6776542 2235678899999997 777888888999999999988764
No 65
>2i6e_A Hypothetical protein; NYSGXRC,10093B, structural genomics, PSI-2, protein structure initiative; 2.50A {Deinococcus radiodurans} SCOP: c.94.1.1
Probab=52.63 E-value=34 Score=29.68 Aligned_cols=98 Identities=17% Similarity=0.105 Sum_probs=57.3
Q ss_pred HHHHHHHhcCCccEEEeeCCCCCCCCCCCceee---eecCCCCCCeEEEeCCCCCCccCCCCCeeecCChhHHHH-----
Q 026500 41 KEIDEALINSQIDIAVHSMKDVPTYLPEKTILP---CNLQREDVRDAFISLSAASLAELPAGSIVGTASLRRKSQ----- 112 (237)
Q Consensus 41 keLe~aLl~g~iDiAVHSlKDlP~~l~~gL~ia---av~~R~dprD~LV~~~~~~l~~Lp~ga~IGTSS~RR~aq----- 112 (237)
.+|-++|.+|++|++.=|.=..+. ..+.+.+. ++.......-++|..+ .++++| .+|+++.-.....
T Consensus 48 ~~L~~~l~~G~lDi~~vs~~~~~~-~~~~~~~l~~~~i~a~g~v~s~~lv~~-~~i~~L---k~Va~~~~s~t~~~Ll~~ 122 (301)
T 2i6e_A 48 TQMNAALLSGEVDIANVSAVEFIR-HADTLAALPDFSVAVLGPVYSVNLFHT-CPLPEL---RRVALTSQSAMSVALLEV 122 (301)
T ss_dssp HHHHHHHHHSSCSEEEEEHHHHHH-TTTTEEEEEEEEEEESSCCSSEEEEES-SCGGGC---CEEEECTTCHHHHHHHHH
T ss_pred HHHHHHHHCCCCCEEEeCHHHHHh-hhCcEEEecCeEEEeeCCcceEEEEeC-CCHHHc---CEEEECCCChHHHHHHHH
Confidence 589999999999999665532222 23333322 4455556666666544 568888 6888775555422
Q ss_pred -HHHhCCCCeEEeccCCCHHHHHHhhccCCccEEeee
Q 026500 113 -ILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLA 148 (237)
Q Consensus 113 -l~~~~pdl~v~~~iRGNV~TRL~KL~~ge~DaiILA 148 (237)
|....-+.+++ ++-..... +.+|++||.++.
T Consensus 123 lL~~~Gl~~~~~-~~~~~~~~----~l~~~~da~l~i 154 (301)
T 2i6e_A 123 LLRQKGLSPVLE-RAEGTAES----LLAAGYDGVLRI 154 (301)
T ss_dssp HHHHTTCCCEEE-ECCSCHHH----HHTTTCSEEEEE
T ss_pred HHHHCCCCcEEE-eCCchHHH----HhccCcCEEEEE
Confidence 22221223555 55444333 225889998875
No 66
>2rc8_A Glutamate [NMDA] receptor subunit 3A; membrane protein, cell junction, glycoprotein, ION transport channel, magnesium; 1.45A {Rattus norvegicus} PDB: 2rc7_A 2rc9_A 2rca_A 2rcb_A
Probab=52.36 E-value=6.6 Score=33.00 Aligned_cols=108 Identities=11% Similarity=0.111 Sum_probs=58.9
Q ss_pred HHHHHHhcCCccEEEeeCCCCCCCCCCCceeeeecCCCCCCeEEEeCCC----CCCccCC-----CCCeeecCChhH-HH
Q 026500 42 EIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLSA----ASLAELP-----AGSIVGTASLRR-KS 111 (237)
Q Consensus 42 eLe~aLl~g~iDiAVHSlKDlP~~l~~gL~iaav~~R~dprD~LV~~~~----~~l~~Lp-----~ga~IGTSS~RR-~a 111 (237)
.+-.+|.+|++|+++-++---|. ..+.+.+.. +-- ...-+++.++. .++++|. .|.+||+..--- ..
T Consensus 107 ~~~~~l~~g~~D~~~~~~~~t~e-R~~~~~fs~-P~~-~~~~~i~~~~~~~~i~~~~dL~~~~~~~g~~vg~~~gs~~~~ 183 (294)
T 2rc8_A 107 GLVGDLLSGTANMAVTSFSINTA-RSQVIDFTS-PFF-STSLGILVRTRGTELSGIHDPKLHHPSQGFRFGTVRESSAED 183 (294)
T ss_dssp HHHHHHHHTSCSEECSSCBCCHH-HHTTSEECS-CSE-EEEEEEEEETTSCCCCSTTCHHHHSCCTTCCEECBTTSHHHH
T ss_pred HHHHHHHCCCcCEEEeccccCHh-HhceEEEcc-chH-hcceEEEEECCCCCcCChhhhhhcCcccCeEEEEEcCChHHH
Confidence 56688999999999865422111 111111110 000 01123343322 3466664 277888743222 33
Q ss_pred HHHHhCCCCe--EEec-cCCCHHHHHHhhcc--CCccEEeeeccccc
Q 026500 112 QILHRYPSLK--VMEN-FRGNVQTRLRKLNE--RVVQATLLALAGLK 153 (237)
Q Consensus 112 ql~~~~pdl~--v~~~-iRGNV~TRL~KL~~--ge~DaiILA~AGL~ 153 (237)
.++..+|+.. +. . --.|.+.-+++|.+ |+.||+|.-..-+.
T Consensus 184 ~l~~~~~~~~~~i~-~~~~~~~~~~~~~l~~~~GrvDa~i~~~~~~~ 229 (294)
T 2rc8_A 184 YVRQSFPEMHEYMR-RYNVPATPDGVQYLKNDPEKLDAFIMDKALLD 229 (294)
T ss_dssp HHHHHCHHHHHHHG-GGCBSSHHHHHHHHHSSSCCCSEEEEEHHHHH
T ss_pred HHHHHHHHHHHHHH-HhcCCCHHHHHHHHHhccCceeEEEecHHHHH
Confidence 4555566532 11 1 12578999999999 99999998765544
No 67
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa}
Probab=51.58 E-value=8.5 Score=33.38 Aligned_cols=112 Identities=13% Similarity=0.083 Sum_probs=62.5
Q ss_pred HHHHHHHhcCCccEEEeeCCCCCC-CCCCCceeeeecC--CCCCC--eEEEeCCC---CCCccCC---CCCeeecC----
Q 026500 41 KEIDEALINSQIDIAVHSMKDVPT-YLPEKTILPCNLQ--REDVR--DAFISLSA---ASLAELP---AGSIVGTA---- 105 (237)
Q Consensus 41 keLe~aLl~g~iDiAVHSlKDlP~-~l~~gL~iaav~~--R~dpr--D~LV~~~~---~~l~~Lp---~ga~IGTS---- 105 (237)
.++.++|.+|++|+++-+....-. ....+..+.+.+. -.+|. -+||.++. ++++||- +|.+||.+
T Consensus 47 ~~~i~al~~G~vDi~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~~lvv~~ds~i~sl~DL~~~~kgk~ia~~~~gs 126 (310)
T 3n5l_A 47 AGIIQGMRFDKVDIAWYGNKAAMEAVDRAHGEIFAQTVAASGAPGYWSLLIANKDSKIDSLEDMLANAKSLTFGNGDPNS 126 (310)
T ss_dssp HHHHHHHHTTSCSEEECCHHHHHHHHHHSCEEEEEEEEETTCCSEEEEEEEEETTCSCCSHHHHHHTGGGCEEEECCTTC
T ss_pred HHHHHHHHcCCCCEEEECcHHHHHHHHhcCCeEEEEEeccCCCcceEEEEEEECCCCCCCHHHHhhhcCCCEEEecCCCc
Confidence 578899999999999865211100 0112444444331 12332 36666544 4677771 46677631
Q ss_pred -ChhHHHH--H-HHhCCC----CeEEeccCCCHHHHHHhhccCCccEEeeecccccc
Q 026500 106 -SLRRKSQ--I-LHRYPS----LKVMENFRGNVQTRLRKLNERVVQATLLALAGLKR 154 (237)
Q Consensus 106 -S~RR~aq--l-~~~~pd----l~v~~~iRGNV~TRL~KL~~ge~DaiILA~AGL~R 154 (237)
|---... + ...--+ ++.+ ..|+.+.-+.-|.+|++|+.+.....+..
T Consensus 127 ~~~~l~~~~~l~~~~Gi~~~~~~~~v--~~g~~~~~~~al~~G~vDa~~~~~~~~~~ 181 (310)
T 3n5l_A 127 TSGYLVPGYYVFAKNNVDPVKAFKRT--LNSSHEVNALAVANKQVDVATFNTEGMER 181 (310)
T ss_dssp TTTTHHHHHHTTTTTTCCHHHHSSEE--EECCHHHHHHHHHTTSSSEEEEEHHHHHH
T ss_pred cHhHHHHHHHHHHHcCCChHHhcccc--ccCCHHHHHHHHHcCCccEEEecchhHHH
Confidence 2111111 1 111111 3444 46888888999999999999986554443
No 68
>3ho7_A OXYR; beta-alpha-barrels, DNA-binding, transcription, transcriptio regulation; 1.58A {Porphyromonas gingivalis}
Probab=50.96 E-value=16 Score=28.03 Aligned_cols=48 Identities=10% Similarity=0.026 Sum_probs=39.3
Q ss_pred eeecCCh-------hHHHHHHHhCCCCeEEeccCCCHHHHHHhhccCCccEEeeec
Q 026500 101 IVGTASL-------RRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLAL 149 (237)
Q Consensus 101 ~IGTSS~-------RR~aql~~~~pdl~v~~~iRGNV~TRL~KL~~ge~DaiILA~ 149 (237)
+||+++. .--.++++.+|++++. -.-++-..-+..|.+|++|..|...
T Consensus 14 ~Ig~~~~~~~~~l~~~l~~~~~~~P~v~i~-~~~~~~~~~~~~l~~g~~Dl~i~~~ 68 (232)
T 3ho7_A 14 NIAVLPTIAPYLLPRVFPIWKKELAGLEIH-VSEMQTSRCLASLLSGEIDMAIIAS 68 (232)
T ss_dssp EEEECTTTHHHHHHHHHHHHHHHSTTEEEE-EEECCHHHHHHHHHHTSCSEEEESS
T ss_pred EEEeccccchhhhHHHHHHHHHHCCCcEEE-EEeCCHHHHHHHHHcCCCCEEEEcC
Confidence 7777654 3356778899999998 7778999999999999999988754
No 69
>3k2d_A ABC-type metal ION transport system, periplasmic; alpha/beta domain, immune system; 2.60A {Vibrio vulnificus}
Probab=45.65 E-value=18 Score=31.61 Aligned_cols=72 Identities=19% Similarity=0.071 Sum_probs=44.0
Q ss_pred HHHHHHhcCCccEEEeeCC----CCCCCCCCCceeeeecCCCCCCeEEEeCCCCCCccCCCCCeeecCCh----hHHHHH
Q 026500 42 EIDEALINSQIDIAVHSMK----DVPTYLPEKTILPCNLQREDVRDAFISLSAASLAELPAGSIVGTASL----RRKSQI 113 (237)
Q Consensus 42 eLe~aLl~g~iDiAVHSlK----DlP~~l~~gL~iaav~~R~dprD~LV~~~~~~l~~Lp~ga~IGTSS~----RR~aql 113 (237)
+.-.||.+|+||+..---. ..-. ..|..+.++-.-.-..=.+.|++++++++||+|++|+.+.- =|.-+|
T Consensus 46 ~pN~AL~~G~IDaN~fQh~pyL~~~nk--~~g~~lv~v~~~~~~p~glYS~k~ksl~dL~~Ga~IaipnD~tN~~RaL~l 123 (237)
T 3k2d_A 46 TPNAALDDGSIDMNAFQHKPYLDRQVE--DRDYKLTIAGNTFVYPIAGYSKQVKSVAALADGVRIAVPNDPTNLGRSLLL 123 (237)
T ss_dssp SHHHHHHHTSCSEEEEEEHHHHHHHHH--HHCCCEEEEEECCCCCCEEECSSCSCSTTCCTTCEEEEECSHHHHHHHHHH
T ss_pred hHHHHHHcCCCCeeccCCHHHHHHHHH--HCCCCEEEEeeecccceEEecCCCCCHHHhcCCCEEEecCCccHHHHHHHH
Confidence 4668999999999854111 0000 11333333332222224677889999999999999997543 455555
Q ss_pred HH
Q 026500 114 LH 115 (237)
Q Consensus 114 ~~ 115 (237)
+.
T Consensus 124 L~ 125 (237)
T 3k2d_A 124 LE 125 (237)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 70
>1ex2_A Protein MAF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: SUC PO4; 1.85A {Bacillus subtilis} SCOP: c.51.4.2 PDB: 1exc_A*
Probab=45.55 E-value=12 Score=31.44 Aligned_cols=24 Identities=21% Similarity=0.188 Sum_probs=19.9
Q ss_pred CeeecCChhHHHHHHHhCCCCeEE
Q 026500 100 SIVGTASLRRKSQILHRYPSLKVM 123 (237)
Q Consensus 100 a~IGTSS~RR~aql~~~~pdl~v~ 123 (237)
-+.+++|+||+..|..+.-+.+++
T Consensus 5 lILAS~SPrR~eLL~~~gi~f~v~ 28 (189)
T 1ex2_A 5 LILASQSPRRKELLDLLQLPYSII 28 (189)
T ss_dssp EEECCCCHHHHHHHHTTCCCCEEC
T ss_pred EEEECCCHHHHHHHHhCCCCeEEE
Confidence 478999999999999987666654
No 71
>4ddd_A Immunogenic protein; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, immune system; 1.90A {Ehrlichia chaffeensis}
Probab=44.76 E-value=57 Score=28.34 Aligned_cols=102 Identities=11% Similarity=0.081 Sum_probs=55.8
Q ss_pred HHHHHHhcCCccEEEeeC--------CCCCCC---CCCCceeeeecCCCCCCeEEEeCC---CCCCccCCCCCeeecCC-
Q 026500 42 EIDEALINSQIDIAVHSM--------KDVPTY---LPEKTILPCNLQREDVRDAFISLS---AASLAELPAGSIVGTAS- 106 (237)
Q Consensus 42 eLe~aLl~g~iDiAVHSl--------KDlP~~---l~~gL~iaav~~R~dprD~LV~~~---~~~l~~Lp~ga~IGTSS- 106 (237)
+.-.+|.+|++|+++-+. +..|-. -.+.+...+..-. ++ -+||.++ .++++||. |.+|+.++
T Consensus 78 ~~i~~l~~g~~D~~~~~~~~~~~a~~g~~~f~~~~~~~d~~~v~~~~~-~~-~~lvv~~ds~i~sl~DL~-gk~v~~~~~ 154 (327)
T 4ddd_A 78 YNLNSIRYSNMDISIVQSDLEYYAYNGLGFYEKMLPMDNLRMLASLHK-EY-LTIVVKKSSNISVIDDIK-GKRVNIGSP 154 (327)
T ss_dssp HHHHHHHTTSCSEEEEEHHHHHHHHHTCGGGTTSCCCTTEEEEEEEEE-EE-EEEEEETTSSCCSGGGGT-TSEEECCST
T ss_pred HHHHHHHcCCCcEEEECcHHHHHHHhCcCcccccCCCcchhehhccCC-cc-EEEEEECCCCCCCHHHhC-CCEEecCCC
Confidence 334678999999997653 112211 1234554333322 23 3444443 35788884 66776642
Q ss_pred ---hhHHH-HH-HHh--CC-CCeEEeccCCCHHHHHHhhccCCccEEeee
Q 026500 107 ---LRRKS-QI-LHR--YP-SLKVMENFRGNVQTRLRKLNERVVQATLLA 148 (237)
Q Consensus 107 ---~RR~a-ql-~~~--~p-dl~v~~~iRGNV~TRL~KL~~ge~DaiILA 148 (237)
.+... ++ +.. .+ +++.+ +..|. ..-+..|.+|+.|+++..
T Consensus 155 Gs~~~~~~~~~l~~~Gi~~~~v~~v-~~~g~-~~a~~aL~~G~vDa~~~~ 202 (327)
T 4ddd_A 155 GTGVRVAMLKLLGEKGWTKKDFSVM-AELKS-SEQAQALCDNKIDVMVDV 202 (327)
T ss_dssp TSHHHHHHHHHHHHHTCCGGGCSEE-ECCCH-HHHHHHHHTTSCSBEEEE
T ss_pred CccHHHHHHHHHHHcCCChHhcchh-hcCCH-HHHHHHHHcCCCCEEEEc
Confidence 22221 12 222 12 33345 56654 667888999999999873
No 72
>1pb7_A N-methyl-D-aspartate receptor subunit 1; ligand binding receptor, NR1, ligand binding protein; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1pbq_A* 1y1m_A 1y1z_A 1y20_A 2a5t_A* 1pb8_A 1pb9_A
Probab=43.93 E-value=4.3 Score=34.26 Aligned_cols=26 Identities=12% Similarity=0.141 Sum_probs=21.5
Q ss_pred CCCHHHHHHhhccCCccEEeeecccc
Q 026500 127 RGNVQTRLRKLNERVVQATLLALAGL 152 (237)
Q Consensus 127 RGNV~TRL~KL~~ge~DaiILA~AGL 152 (237)
-.|.+.-+++|.+|+.||++.-..-+
T Consensus 203 ~~~~~~~~~~l~~G~vDa~i~d~~~~ 228 (292)
T 1pb7_A 203 YESAAEAIQAVRDNKLHAFIWDSAVL 228 (292)
T ss_dssp BSSHHHHHHHHHTTSCSEEEEEHHHH
T ss_pred CCCHHHHHHHHHcCCceEEEEcHHHH
Confidence 34889999999999999999865543
No 73
>3jv9_A OXYR, transcriptional regulator, LYSR family; LYSR-type transcriptional regulator, LTTR, redox, structural genomics, OPPF; 2.39A {Neisseria meningitidis}
Probab=42.51 E-value=20 Score=27.09 Aligned_cols=48 Identities=17% Similarity=0.122 Sum_probs=37.8
Q ss_pred eeecCCh-------hHHHHHHHhCCCCeEEeccCCCHHHHHHhhccCCccEEeeec
Q 026500 101 IVGTASL-------RRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLAL 149 (237)
Q Consensus 101 ~IGTSS~-------RR~aql~~~~pdl~v~~~iRGNV~TRL~KL~~ge~DaiILA~ 149 (237)
+||+++. .--.++++.+|++++. -.-++-+.-++.|.+|++|..|...
T Consensus 7 ~Ig~~~~~~~~~l~~~l~~~~~~~P~i~i~-i~~~~~~~~~~~l~~g~~Dl~i~~~ 61 (219)
T 3jv9_A 7 KLGLIFTVAPYLLPKLIVSLRRTAPKMPLM-LEENYTHTLTESLKRGDVDAIIVAE 61 (219)
T ss_dssp EEEEETTTHHHHHHHHHHHHHHHSTTCCEE-EEEECHHHHHHHHHHTSSSEEEEES
T ss_pred EEEEcchhhHHHHHHHHHHHHHHCCCcEEE-EEeCCcHHHHHHHHcCCCCEEEEcC
Confidence 6666543 2356778889999998 7778888888999999999988754
No 74
>2y7p_A LYSR-type regulatory protein; transcription regulator, DNA-binding, transcription, transcr factor, transcription regulation; HET: SAL PEU; 1.85A {Burkholderia SP} PDB: 2y7k_A* 2y84_A 2y7w_A 2y7r_A
Probab=42.10 E-value=15 Score=28.75 Aligned_cols=47 Identities=13% Similarity=0.198 Sum_probs=36.5
Q ss_pred eeecCCh-------hHHHHHHHhCCCCeEEeccCCCHHHHHHhhccCCccEEeee
Q 026500 101 IVGTASL-------RRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLA 148 (237)
Q Consensus 101 ~IGTSS~-------RR~aql~~~~pdl~v~~~iRGNV~TRL~KL~~ge~DaiILA 148 (237)
+||+++. +--+++++.+|++++. -..+|-+.-++.|.+|++|..|..
T Consensus 11 ~Ig~~~~~~~~~lp~~l~~f~~~~P~v~l~-l~~~~~~~l~~~L~~g~iDl~i~~ 64 (218)
T 2y7p_A 11 NLAMTDIGEMYFMPPLMEALAQRAPHIQIS-TLRPNAGNLKEDMESGAVDLALGL 64 (218)
T ss_dssp EEECCHHHHHHHHHHHHHHHHHHCTTCEEE-EECCCTTTHHHHHHHTSSCEEEEC
T ss_pred EEEecHHHHHHHHHHHHHHHHHHCCCCEEE-EEeCCcccHHHHHhCCCceEEEec
Confidence 7887753 2245667889999998 777887777889999999987753
No 75
>3onm_A Transcriptional regulator LRHA; LYSR, ROVM, transcription factor, virulence factor; 2.40A {Yersinia pseudotuberculosis}
Probab=41.81 E-value=28 Score=27.23 Aligned_cols=49 Identities=14% Similarity=0.101 Sum_probs=40.1
Q ss_pred eeecCCh-------hHHHHHHHhCCCCeEEeccCCCHHHHHHhhccCCccEEeeecc
Q 026500 101 IVGTASL-------RRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALA 150 (237)
Q Consensus 101 ~IGTSS~-------RR~aql~~~~pdl~v~~~iRGNV~TRL~KL~~ge~DaiILA~A 150 (237)
+||+++. +.-.+++..+|++++. -.-++-..=+..|.+|++|..|....
T Consensus 30 ~Ig~~~~~~~~~l~~~l~~f~~~~P~i~l~-i~~~~~~~~~~~L~~g~~Dl~i~~~~ 85 (238)
T 3onm_A 30 IIGASDDTADTLLPFLLNRVATLYPRLAID-VRVKRSPFIADMLSSGEVDLAITTAK 85 (238)
T ss_dssp EEEECHHHHTTHHHHHHHHHHHHCTTCCEE-EEECCHHHHHHHHHHTSCSEEEECSC
T ss_pred EEeccchhhHHHHHHHHHHHHHHCCCcEEE-EEECCHHHHHHHHHCCCccEEEEecC
Confidence 7887654 4567788899999998 77888888889999999999887543
No 76
>1us5_A Putative GLUR0 ligand binding core; receptor, membrane protein, glutamate receptor, L-glutamate; HET: GLU; 1.5A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 1us4_A*
Probab=41.29 E-value=1.1e+02 Score=25.34 Aligned_cols=103 Identities=15% Similarity=0.162 Sum_probs=56.7
Q ss_pred HHHHHHHHhcCCccEEEeeC--------CCC--CCC--CCCCceeeeecCCCCCCeEEEeCCC---CCCccCCCCCeeec
Q 026500 40 TKEIDEALINSQIDIAVHSM--------KDV--PTY--LPEKTILPCNLQREDVRDAFISLSA---ASLAELPAGSIVGT 104 (237)
Q Consensus 40 tkeLe~aLl~g~iDiAVHSl--------KDl--P~~--l~~gL~iaav~~R~dprD~LV~~~~---~~l~~Lp~ga~IGT 104 (237)
..++-++|.+|++|+++-+. +.. |-. -..++...+..-+ ++ -++|.++. ++++||. |.+|++
T Consensus 60 ~~~~~~~l~~g~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~-~~lvv~~~~~i~sl~dL~-g~~i~~ 136 (314)
T 1us5_A 60 SVANINAINAGEFEMALAQNDIAYYAYQGCCIPAFEGKPVKTIRALAALYP-EV-VHVVARKDAGIRTVADLK-GKRVVV 136 (314)
T ss_dssp HHHHHHHHHTTSCSEEEEEHHHHHHHHHTCSSTTTTTCCCTTEEEEEEEEE-EE-EEEEEETTSSCSSGGGGT-TSEEEC
T ss_pred HHHHHHHHHcCCCcEEEEccHhHHHHhcCCCCCCCCCCCccchhehhhcCc-ce-EEEEEECCCCCCcHHHhC-CCEeec
Confidence 34677899999999997542 111 211 1245655433322 22 45555432 5678885 567766
Q ss_pred C---C-hhHHH-HHHHhC---C-CC-eEEeccCCCHHHHHHhhccCCccEEeee
Q 026500 105 A---S-LRRKS-QILHRY---P-SL-KVMENFRGNVQTRLRKLNERVVQATLLA 148 (237)
Q Consensus 105 S---S-~RR~a-ql~~~~---p-dl-~v~~~iRGNV~TRL~KL~~ge~DaiILA 148 (237)
+ | .+... ++.... | ++ ++. . .| -..-+..|.+|+.|+.+..
T Consensus 137 ~~~gs~~~~~~~~~l~~~G~~~~~v~~~~-~-~~-~~~~~~al~~G~vda~~~~ 187 (314)
T 1us5_A 137 GDVGSGTEQNARQILEAYGLTFDDLGQAI-R-VS-ASQGIQLMQDKRADALFYT 187 (314)
T ss_dssp CCTTCHHHHHHHHHHHHTTCCGGGSSEEE-C-CC-HHHHHHHHHTTSCSEEEEE
T ss_pred CCCCchHHHHHHHHHHHcCCCHHHcCcee-c-CC-HHHHHHHHHcCCccEEEEc
Confidence 2 2 23322 222221 2 23 333 3 34 5667888999999999853
No 77
>2h98_A HTH-type transcriptional regulator CATM; BENM, LTTR; 1.80A {Acinetobacter SP} PDB: 2h9q_A* 2f7b_A 2f7c_A* 3glb_A* 3m1e_A
Probab=40.77 E-value=30 Score=28.94 Aligned_cols=40 Identities=5% Similarity=0.084 Sum_probs=34.2
Q ss_pred hHHHHHHHhCCCCeEEeccCCCHHHHHHhhccCCccEEeee
Q 026500 108 RRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLA 148 (237)
Q Consensus 108 RR~aql~~~~pdl~v~~~iRGNV~TRL~KL~~ge~DaiILA 148 (237)
..-++++..+|++++. -.-++-+..+..|.+|++|..|..
T Consensus 107 ~~l~~f~~~~P~v~l~-l~~~~~~~~~~~l~~g~~Dlai~~ 146 (313)
T 2h98_A 107 EIIYLFRQQNPEIHIE-LIECGTKDQINALKQGKIDLGFGR 146 (313)
T ss_dssp HHHHHHHHHCTTSEEE-EEECCHHHHHHHHHHTSCSEEEES
T ss_pred HHHHHHHHHCCCeEEE-EEeCChHHHHHHHHcCCCCEEEEe
Confidence 4567788899999998 778888899999999999988764
No 78
>3ir1_A Outer membrane lipoprotein GNA1946; D-methionine cultured, protein binding; 2.15A {Neisseria meningitidis}
Probab=39.73 E-value=22 Score=31.20 Aligned_cols=73 Identities=21% Similarity=0.188 Sum_probs=45.3
Q ss_pred HHHHHHhcCCccEEEeeCCCCCCC----CCCCceeeeecCCCCCCeEEEeCCCCCCccCCCCCeeecCC----hhHHHHH
Q 026500 42 EIDEALINSQIDIAVHSMKDVPTY----LPEKTILPCNLQREDVRDAFISLSAASLAELPAGSIVGTAS----LRRKSQI 113 (237)
Q Consensus 42 eLe~aLl~g~iDiAVHSlKDlP~~----l~~gL~iaav~~R~dprD~LV~~~~~~l~~Lp~ga~IGTSS----~RR~aql 113 (237)
..-.||.+|+||+-..-- .|.- -..|..+.++-.-.-.-=.+-|++++++++||+|++|+.+. .=|.-.|
T Consensus 41 ~pN~AL~~G~iDaN~fQh--~pyL~~~nk~~g~~Lv~v~~~~~~p~glYS~k~ksl~dl~~Ga~IaIPnDptN~~RaL~l 118 (245)
T 3ir1_A 41 RPNLALAEGELDINVFQH--KPYLDDFKKEHNLDITEVFQVPTAPLGLYPGKLKSLEEVKDGSTVSAPNDPSNFARVLVM 118 (245)
T ss_dssp HHHHHHHHTSCSEEEEEC--HHHHHHHHHHHTCCEEEEEECCBCCCEEEESSCCCGGGCCTTCEEEEECSHHHHHHHHHH
T ss_pred hHHHHHHCCCcCeeccCC--HHHHHHHHHHcCCCEEEEeeecccceEEecCCCCCHHHcCCCCEEEecCCccHHHHHHHH
Confidence 467899999999875421 1110 01244444443333233456789999999999999999643 3566555
Q ss_pred HHh
Q 026500 114 LHR 116 (237)
Q Consensus 114 ~~~ 116 (237)
+..
T Consensus 119 L~~ 121 (245)
T 3ir1_A 119 LDE 121 (245)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 79
>3tqw_A Methionine-binding protein; transport and binding proteins, transport protein; HET: MSE; 2.00A {Coxiella burnetii}
Probab=36.09 E-value=16 Score=31.96 Aligned_cols=73 Identities=16% Similarity=0.159 Sum_probs=43.7
Q ss_pred HHHHHHhcCCccEEE--ee--CCCCCCCCCCCceeeeecCCCCCCeEEEeCCCCCCccCCCCCeeecC----ChhHHHHH
Q 026500 42 EIDEALINSQIDIAV--HS--MKDVPTYLPEKTILPCNLQREDVRDAFISLSAASLAELPAGSIVGTA----SLRRKSQI 113 (237)
Q Consensus 42 eLe~aLl~g~iDiAV--HS--lKDlP~~l~~gL~iaav~~R~dprD~LV~~~~~~l~~Lp~ga~IGTS----S~RR~aql 113 (237)
..-.||.+|+||+.. |. |...-.+ .|..+.++-.-.-..-.+.|++++++++||+|++|+.+ .-=|.-++
T Consensus 43 ~pN~AL~~G~iDaN~fQh~pyl~~~~k~--~g~~lv~v~~~~~~p~glYS~k~ksl~dL~~Ga~Iaipnd~tn~~RaL~l 120 (240)
T 3tqw_A 43 TPNEALADGSVDANMFQHLPYLKAQIEM--RGYKIVSIGKTFVYPMGLYSKKITALTQLKTGAKIAVPSDPSNEARALLL 120 (240)
T ss_dssp SHHHHHHTTSCSEEEEEEHHHHHHHHHH--HCCCEEEEEEEEECCCEEECSSCSSGGGCCTTCEEEEECSHHHHHHHHHH
T ss_pred hHHHHHHcCCcCeeccCCHHHHHHHHHH--CCCCEEEEeeccccceEEecCCCCCHHHhcCCCEEEEecCccHHHHHHHH
Confidence 366899999999984 32 2111001 12222332211111235778899999999999999954 44566666
Q ss_pred HHh
Q 026500 114 LHR 116 (237)
Q Consensus 114 ~~~ 116 (237)
+..
T Consensus 121 L~~ 123 (240)
T 3tqw_A 121 LEK 123 (240)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 80
>2p5x_A ASMTL, N-acetylserotonin O-methyltransferase-like protei; structural genomics, structural genomics consortium, unknown function; 2.00A {Homo sapiens}
Probab=35.75 E-value=23 Score=30.59 Aligned_cols=24 Identities=21% Similarity=0.285 Sum_probs=19.7
Q ss_pred CeeecCChhHHHHHHHhCCCCeEE
Q 026500 100 SIVGTASLRRKSQILHRYPSLKVM 123 (237)
Q Consensus 100 a~IGTSS~RR~aql~~~~pdl~v~ 123 (237)
-+.+++|+||+..|..+.-+.+++
T Consensus 6 lILAS~SPrR~eLL~~~Gi~f~v~ 29 (230)
T 2p5x_A 6 VVLASASPRRQEILSNAGLRFEVV 29 (230)
T ss_dssp EEECCCCHHHHHHHHHTTCCCEEC
T ss_pred EEEeCCCHHHHHHHHHCCCCeEEe
Confidence 488999999999999987665554
No 81
>3up9_A Putative uncharacterized protein; membrane lipoprotein, L-methionine binding protein, NLPA LIP structural genomics; HET: PG4 PE4; 2.35A {Actinomyces odontolyticus} SCOP: c.94.1.0
Probab=35.64 E-value=18 Score=31.62 Aligned_cols=72 Identities=19% Similarity=0.161 Sum_probs=43.1
Q ss_pred HHHHHHhcCCccEEEeeC----CCCCCCCCCCceeeeecCCCCCCeEEEeCCCCCCccCCCCCeeecCCh----hHHHHH
Q 026500 42 EIDEALINSQIDIAVHSM----KDVPTYLPEKTILPCNLQREDVRDAFISLSAASLAELPAGSIVGTASL----RRKSQI 113 (237)
Q Consensus 42 eLe~aLl~g~iDiAVHSl----KDlP~~l~~gL~iaav~~R~dprD~LV~~~~~~l~~Lp~ga~IGTSS~----RR~aql 113 (237)
+...||.+|+||+..--- ...-. ..|..+.++-.-.-..=.+.|++++++++||+|++|+.+.- =|.-.|
T Consensus 47 ~pN~AL~~G~IDaN~fQH~pyL~~~nk--~~g~~lv~v~~~~~~p~giYS~k~ksl~dL~~Ga~IaIPnD~tN~~RaL~l 124 (245)
T 3up9_A 47 QPNTALNDGDLDANFYQTVPYLENAEK--QFGYNFEAGEGIHLEPLGVFSNKHKSLDELPDGGTIGIISDTANQSRALEL 124 (245)
T ss_dssp HHHHHHHTTSCSEEEEEEHHHHHHHHH--HHCCCEEECCCCEECCCEEECSSCSCGGGCCTTEEEEEECSHHHHHHHHHH
T ss_pred cHHHHHHcCCCceeccCCHHHHHHHHH--HCCCCEEEEeeecccceEEEeCCCCCHHHcCcCCEEEEecCcchHHHHHHH
Confidence 567899999999985411 10000 11333333322221223567889999999999999997543 455555
Q ss_pred HH
Q 026500 114 LH 115 (237)
Q Consensus 114 ~~ 115 (237)
+.
T Consensus 125 L~ 126 (245)
T 3up9_A 125 LA 126 (245)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 82
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=35.23 E-value=38 Score=27.25 Aligned_cols=41 Identities=10% Similarity=0.038 Sum_probs=33.7
Q ss_pred hHHHHHHHhCCCCeEEeccCCCHHHHHHhhccCCccEEeeec
Q 026500 108 RRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLAL 149 (237)
Q Consensus 108 RR~aql~~~~pdl~v~~~iRGNV~TRL~KL~~ge~DaiILA~ 149 (237)
..-.+++..+|++++. -.-++-+.-+..|.+|++|..|...
T Consensus 108 ~~l~~f~~~~P~i~l~-~~~~~~~~~~~~l~~g~~Dl~i~~~ 148 (294)
T 1ixc_A 108 LLLRAFLTSTPTATVS-LTHMTKDEQVEGLLAGTIHVGFSRF 148 (294)
T ss_dssp HHHHHHHHHCTTEEEE-EEECCHHHHHHHHHHTSCSEEEESC
T ss_pred HHHHHHHHHCCCcEEE-EEeCCHHHHHHHHHCCCccEEEEec
Confidence 4557788899999997 7778877888899999999888643
No 83
>2amh_A Septum formation protein MAF homologue, putative; domain alpha-beta motif, structural genomics, PSI, protein structure initiative; 2.00A {Trypanosoma brucei} SCOP: c.51.4.2
Probab=35.07 E-value=18 Score=30.81 Aligned_cols=18 Identities=28% Similarity=0.444 Sum_probs=16.0
Q ss_pred eeecCChhHHHHHHHhCC
Q 026500 101 IVGTASLRRKSQILHRYP 118 (237)
Q Consensus 101 ~IGTSS~RR~aql~~~~p 118 (237)
+.+++|+||+..|..+.|
T Consensus 13 ILAS~SPrR~eLL~~~~~ 30 (207)
T 2amh_A 13 IIGTSSAFRANVLREHFG 30 (207)
T ss_dssp EECCCCHHHHHHHHHHHT
T ss_pred EEccCCHHHHHHHHhhhh
Confidence 789999999999999844
No 84
>2nxo_A Hypothetical protein SCO4506; PFAM, DUF178, NYSGXRC, 10093F, PSI-2, structural genomics, protein structure initiative; 2.04A {Streptomyces coelicolor} SCOP: c.94.1.1
Probab=34.03 E-value=17 Score=30.72 Aligned_cols=63 Identities=16% Similarity=0.195 Sum_probs=34.3
Q ss_pred HHHHHHHHhcCCccEEEeeCCCCCCCCCCCceee---eecCCCCCCeEEEeCCCCCCccCCCCCeeecC
Q 026500 40 TKEIDEALINSQIDIAVHSMKDVPTYLPEKTILP---CNLQREDVRDAFISLSAASLAELPAGSIVGTA 105 (237)
Q Consensus 40 tkeLe~aLl~g~iDiAVHSlKDlP~~l~~gL~ia---av~~R~dprD~LV~~~~~~l~~Lp~ga~IGTS 105 (237)
..++-++|.+|++|++.=|.=-... ..+.+.+. ++.......-++|..+ .+++||. |-+||++
T Consensus 42 ~~~l~~al~~G~iDia~~~~~~~~~-~~~~~~il~~~~~~~~g~~~sv~lv~~-~~i~DLk-GKkIav~ 107 (291)
T 2nxo_A 42 PEKLSEQLVRGDLDIGPVTLVEFLK-NADDLVAFPDIAVGCDGPVMSCVIVSQ-VPLDRLD-GARVALG 107 (291)
T ss_dssp HHHHHHHHHTTSCSEEEEEHHHHHH-TGGGEEEEEEEEEEESSCCSSEEEEES-SCTTSCS-SSEEEEE
T ss_pred HHHHHHHHHcCCCCEeehhHHHHHh-CcccEEEcCCccccccCCceEEEEEeC-CCHHHhC-CCEEEeC
Confidence 3578899999999999765210000 11113221 2322222233444333 4578884 8889875
No 85
>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein struc initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1
Probab=33.06 E-value=21 Score=29.24 Aligned_cols=38 Identities=11% Similarity=0.156 Sum_probs=29.8
Q ss_pred HHHHHHhCCCCeEEeccCCCHHHHHHhhccCCccEEeee
Q 026500 110 KSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLA 148 (237)
Q Consensus 110 ~aql~~~~pdl~v~~~iRGNV~TRL~KL~~ge~DaiILA 148 (237)
-.+++..+|++++. -.-++-+.-+..|.+|++|..|..
T Consensus 120 l~~f~~~~P~i~i~-l~~~~~~~~~~~l~~g~~Dl~i~~ 157 (310)
T 2esn_A 120 MNRLQHSAPGVRLR-LVNAERKLSVEALASGRIDFALGY 157 (310)
T ss_dssp HHHHHHHSTTCEEE-EECCSSSCCHHHHHHTSSSEEEEC
T ss_pred HHHHHHHCCCeEEE-EEeCCcccHHHHHHcCCCCEEEec
Confidence 46778889999997 666765555677889999988865
No 86
>2de3_A Dibenzothiophene desulfurization enzyme B; alpha-beta, hydrolase; HET: OBP; 1.60A {Rhodococcus SP} PDB: 2de4_A* 2de2_A
Probab=33.03 E-value=97 Score=27.27 Aligned_cols=57 Identities=23% Similarity=0.275 Sum_probs=31.8
Q ss_pred HhcCCccEEEeeCCCCCCCC------CCCceeeeecCCCCCCeEEEeCCC---CCCccCCCCCeeecCC
Q 026500 47 LINSQIDIAVHSMKDVPTYL------PEKTILPCNLQREDVRDAFISLSA---ASLAELPAGSIVGTAS 106 (237)
Q Consensus 47 Ll~g~iDiAVHSlKDlP~~l------~~gL~iaav~~R~dprD~LV~~~~---~~l~~Lp~ga~IGTSS 106 (237)
+..|.+|++.. .-++|.-+ +..+.+.++.... ....++++++ ++++|| +|.+||+++
T Consensus 61 ~~~~~~d~~~~-~g~~~~~~a~~~g~~~~~~~v~~~~~~-~~~~i~v~~ds~I~s~~DL-kGk~Igv~~ 126 (365)
T 2de3_A 61 FTYDQPAYTRF-GGEIPPLLSEGLRAPGRTRLLGITPLL-GRQGFFVRDDSPITAAADL-AGRRIGVSA 126 (365)
T ss_dssp HHCCSTTEEEE-ECSHHHHHHHHTTCTTSEEEEEEEEEC-CSEEEEEETTCSCCSGGGG-TTCEEEECH
T ss_pred HhccCchhhhh-cCCcHHHHHHhcCCCCCeEEEEEeccC-CcceEEECCCCCCCCHHHh-CCCeEEeec
Confidence 44577777643 23444211 1145555554322 3456666543 567888 589999864
No 87
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A*
Probab=30.65 E-value=28 Score=28.59 Aligned_cols=41 Identities=15% Similarity=0.156 Sum_probs=34.1
Q ss_pred hHHHHHHHhCCCCeEEeccCCCHHHHHHhhccCCccEEeeec
Q 026500 108 RRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLAL 149 (237)
Q Consensus 108 RR~aql~~~~pdl~v~~~iRGNV~TRL~KL~~ge~DaiILA~ 149 (237)
..-..++..+|++++. -..++-+.-+..|.+|++|..|...
T Consensus 109 ~~l~~f~~~~P~i~i~-l~~~~~~~~~~~l~~g~~Dlai~~~ 149 (305)
T 3fxq_A 109 LALASFAREFPDVTVN-VRDGMYPAVSPQLRDGTLDFALTAA 149 (305)
T ss_dssp HHHHHHHHHCTTCEEE-EEECCTTTTHHHHHHTSSSEEEEEC
T ss_pred HHHHHHHHHCCCCEEE-EEECCHHHHHHHHHcCCCCEEEecC
Confidence 3457788899999998 7777878888899999999988754
No 88
>4ef1_A Pheromone COB1/lipoprotein, YAEC family; periplasmic methionine binding protein, NLPA lipoprotein, ST genomics; 1.90A {Enterococcus faecalis} PDB: 4ef2_A*
Probab=29.02 E-value=27 Score=30.50 Aligned_cols=148 Identities=20% Similarity=0.159 Sum_probs=80.4
Q ss_pred HHHHHHhcCCccEEE--ee--CCCCCCCCCCCceeeeecCCCCCCeEEEeCCCCCCccCCCCCeeecCC----hhHHHHH
Q 026500 42 EIDEALINSQIDIAV--HS--MKDVPTYLPEKTILPCNLQREDVRDAFISLSAASLAELPAGSIVGTAS----LRRKSQI 113 (237)
Q Consensus 42 eLe~aLl~g~iDiAV--HS--lKDlP~~l~~gL~iaav~~R~dprD~LV~~~~~~l~~Lp~ga~IGTSS----~RR~aql 113 (237)
..-.||.+|+||+.. |. |...-.+-.-.|+.++-..-+ | =.+.|++.+++++||+|++|+.+. .=|.-+|
T Consensus 43 ~pN~AL~~G~iD~n~fQh~pyl~~~~k~~g~~Lv~v~~~~~~-p-~glYS~kiksl~dL~~Ga~IAIpnd~sn~~RaL~l 120 (246)
T 4ef1_A 43 LPNKALESGDIDANYFQHVPFFNEAVKENDYDFVNAGAIHLE-P-VGLYSKKYKSLQEIPDGSTIYVSSSVSDWPRVLTI 120 (246)
T ss_dssp HHHHHHHHTSCSEEEEEEHHHHHHHHHHHTCCEEEEEEEEEC-C-CEEECSSCSSGGGSCTTCEEEEESCGGGHHHHHHH
T ss_pred hHHHHHHCCCCCEEecCCHHHHHHHHHHCCCCEEEEeecccc-c-eEEecCCCCCHHHcCCCCEEEeecCCchHHHHHHH
Confidence 355799999999986 31 110000011123332222212 2 356688889999999999999765 2455555
Q ss_pred HHh------CC-----------------CCeE-EeccCCCHHHHHHhhccCCccEEeee-----cccccccCCCCcceee
Q 026500 114 LHR------YP-----------------SLKV-MENFRGNVQTRLRKLNERVVQATLLA-----LAGLKRLSMTENVTNI 164 (237)
Q Consensus 114 ~~~------~p-----------------dl~v-~~~iRGNV~TRL~KL~~ge~DaiILA-----~AGL~RLgl~~~i~~~ 164 (237)
+.. .+ +++| + ++-. .+=-+-|.+|+.||.++- .|||.-.. +.+ +
T Consensus 121 L~~~GLI~Lk~~~~~~~~t~~DI~~Npk~l~~~~-el~a--aql~~al~dg~vDaavin~n~a~~agl~p~~--dal--~ 193 (246)
T 4ef1_A 121 LEDAGLITLKEGVDRTTATFDDIDKNTKKLKFNH-ESDP--AIMTTLYDNEEGAAVLINSNFAVDQGLNPKK--DAI--A 193 (246)
T ss_dssp HHHTTSEEECTTCCGGGCCGGGEEEETTCCEEEE-EECG--GGHHHHHHTTCSSEEEECHHHHHHTTCCHHH--HCS--E
T ss_pred HHHCCCeeecCCCCcCcCCHhHHhcCCCccEEee-ecCH--HHHHHHhccccccEEEEechHHHHcCCCCcc--Cce--E
Confidence 442 11 2567 6 5543 223445789999999873 35654210 111 1
Q ss_pred ecCCCCCCCCCCceEEEEEecC---chhhhhhhccccccccc
Q 026500 165 LSVDDMLPAVAQGAIGIACRSN---DEKMVPFTTHSQASILN 203 (237)
Q Consensus 165 l~~~~~lPA~GQGalave~R~~---d~~~~~~l~~~~~~~~~ 203 (237)
++... .+=+..|.+|++ ++.+..+.+.+++...+
T Consensus 194 ~E~~~-----~~y~n~i~vr~~~~~~~~~k~lv~~~~s~~v~ 230 (246)
T 4ef1_A 194 LEKES-----SPYANIIAVRKEDENNENVKKLVKVLRSKEVQ 230 (246)
T ss_dssp ECSCC-----GGGCEEEEEEGGGTTCHHHHHHHHHHHSHHHH
T ss_pred EcCCC-----CCeEEEEEEeccccCCHHHHHHHHHHcCHHHH
Confidence 22111 133445666764 45677777777654433
No 89
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=28.57 E-value=50 Score=26.73 Aligned_cols=40 Identities=15% Similarity=0.190 Sum_probs=33.6
Q ss_pred hHHHHHHHhCCCCeEEeccCCCHHHHHHhhccCCccEEeee
Q 026500 108 RRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLA 148 (237)
Q Consensus 108 RR~aql~~~~pdl~v~~~iRGNV~TRL~KL~~ge~DaiILA 148 (237)
..-..++..+|++++. -.-++-..-+..|.+|++|..|..
T Consensus 112 ~~l~~f~~~~P~i~i~-l~~~~~~~~~~~l~~g~~Dl~i~~ 151 (306)
T 3fzv_A 112 GLIAGFRQAYPGVEIR-IRDGEQQELVQGLTSGRFDLAFLY 151 (306)
T ss_dssp HHHHHHHHHCTTEEEE-EEEECHHHHHHHHHHTSCSEEEEC
T ss_pred HHHHHHHHHCCCeEEE-EEeCCHHHHHHHHHCCCccEEEEe
Confidence 3456788899999997 777888888999999999988864
No 90
>3jv9_A OXYR, transcriptional regulator, LYSR family; LYSR-type transcriptional regulator, LTTR, redox, structural genomics, OPPF; 2.39A {Neisseria meningitidis}
Probab=28.04 E-value=45 Score=25.01 Aligned_cols=131 Identities=13% Similarity=0.083 Sum_probs=68.5
Q ss_pred HHHHHHHHhcCCccEEEeeCCCCCCCCCCCceeeeecCCCCCCeEEEeCC-------CCCCccCCCCCeeecCC--hhHH
Q 026500 40 TKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLS-------AASLAELPAGSIVGTAS--LRRK 110 (237)
Q Consensus 40 tkeLe~aLl~g~iDiAVHSlKDlP~~l~~gL~iaav~~R~dprD~LV~~~-------~~~l~~Lp~ga~IGTSS--~RR~ 110 (237)
..++.++|.+|++|+|+-.... .++++....+ ..++--++++++ ..++++|..-..|..+. .-|
T Consensus 42 ~~~~~~~l~~g~~Dl~i~~~~~----~~~~~~~~~l--~~~~~~~v~~~~~pl~~~~~~~~~~L~~~~~i~~~~~~~~~- 114 (219)
T 3jv9_A 42 THTLTESLKRGDVDAIIVAEPF----QEPGIVTEPL--YDEPFFVIVPKGHSFEELDAVSPRMLGEEQVLLLTEGNCMR- 114 (219)
T ss_dssp HHHHHHHHHHTSSSEEEEESSC----CCTTEEEEEE--EEEEEEEEEETTCGGGTSSSCCSSTTSSSCEEEECTTCHHH-
T ss_pred cHHHHHHHHcCCCCEEEEcCCC----CCCCeeEEEe--eeceEEEEEeCCCCcccCCCCCHHHhcCCcEEEecCCccHH-
Confidence 4578999999999999987632 1455543322 223333333332 13567776656554332 222
Q ss_pred HHHHHh-----------CCCCeEEeccCCCHHHHHHhhccCCccEEeeecccccccCCCCcceeeecCCCCCCCCCCceE
Q 026500 111 SQILHR-----------YPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPAVAQGAI 179 (237)
Q Consensus 111 aql~~~-----------~pdl~v~~~iRGNV~TRL~KL~~ge~DaiILA~AGL~RLgl~~~i~~~l~~~~~lPA~GQGal 179 (237)
..+... .|...+ .-.|.++-+.-+.+|.. ..++...-...+ ....+ ..++.+.. .-.--+
T Consensus 115 ~~~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~v~~g~g-i~~~p~~~~~~~-~~~~l-~~~~~~~~---~~~~~~ 185 (219)
T 3jv9_A 115 DQVLSSCSELAAKQRIQGLTNTL---QGSSINTIRHMVASGLA-ISVLPATALTEN-DHMLF-SIIPFEGT---PPSRRV 185 (219)
T ss_dssp HHHHHHCSTTHHHHHHHTTTSSC---EESSHHHHHHHHHHTSC-EEEEEGGGCCTT-CTTTE-EEECCSSS---CCEEEE
T ss_pred HHHHHHHHhhhhhhccCCCCceE---EeCCHHHHHHHHHcCCc-EEehhHHHHHhc-cCCcE-EEEecCCC---CcceeE
Confidence 222222 233322 23588998888888854 344444444443 22222 23443322 223456
Q ss_pred EEEEecC
Q 026500 180 GIACRSN 186 (237)
Q Consensus 180 ave~R~~ 186 (237)
.+.++++
T Consensus 186 ~l~~~~~ 192 (219)
T 3jv9_A 186 VLAYRRN 192 (219)
T ss_dssp EEEEETT
T ss_pred EEEEecC
Confidence 6777765
No 91
>1al3_A Cys regulon transcriptional activator CYSB; LYSR family, cysteine biosynthesis, transcription regulation; 1.80A {Klebsiella aerogenes} SCOP: c.94.1.1
Probab=27.62 E-value=57 Score=27.15 Aligned_cols=47 Identities=13% Similarity=0.199 Sum_probs=37.6
Q ss_pred eeecCC-------hhHHHHHHHhCCCCeEEeccCCCHHHHHHhhccCCccEEeee
Q 026500 101 IVGTAS-------LRRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLA 148 (237)
Q Consensus 101 ~IGTSS-------~RR~aql~~~~pdl~v~~~iRGNV~TRL~KL~~ge~DaiILA 148 (237)
+||+++ +..-.+++..+|++++. -.-++-+.-+..|.+|++|..|..
T Consensus 96 ~I~~~~~~~~~~l~~~l~~f~~~~P~v~i~-l~~~~~~~~~~~l~~g~~Dlai~~ 149 (324)
T 1al3_A 96 YVATTHTQARYALPGVIKGFIERYPRVSLH-MHQGSPTQIAEAVSKGNADFAIAT 149 (324)
T ss_dssp EEEECHHHHHHTSHHHHHHHHHHCTEEEEE-EEECCHHHHHHHHHTTCCSEEEES
T ss_pred EEEechhhhhhHHHHHHHHHHHHCCCCEEE-EEECCHHHHHHHHHCCCceEEEEe
Confidence 777764 24457788899999997 777888888889999999988764
No 92
>1i6a_A OXYR, hydrogen peroxide-inducible genes activator; OXYR regulatory domain, oxidized form, transcription; 2.30A {Escherichia coli} SCOP: c.94.1.1 PDB: 1i69_A
Probab=23.65 E-value=41 Score=25.79 Aligned_cols=20 Identities=15% Similarity=0.307 Sum_probs=17.0
Q ss_pred HHHHHHHHhcCCccEEEeeC
Q 026500 40 TKEIDEALINSQIDIAVHSM 59 (237)
Q Consensus 40 tkeLe~aLl~g~iDiAVHSl 59 (237)
..++.++|.+|++|+|+-..
T Consensus 43 ~~~~~~~l~~g~~Dl~i~~~ 62 (219)
T 1i6a_A 43 THQLLAQLDSGKLDAVILAL 62 (219)
T ss_dssp HHHHHHHHHHTSCSEEEEEC
T ss_pred hHHHHHHHHcCCeeEEEecC
Confidence 46788999999999999754
No 93
>4got_A Methionine-binding lipoprotein METQ; NLPA lipoprotein, PF03180 family, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.95A {Bacillus subtilis subsp}
Probab=22.48 E-value=43 Score=29.32 Aligned_cols=149 Identities=14% Similarity=0.092 Sum_probs=79.5
Q ss_pred HHHHHHhcCCccEEE--ee--CCCCCCCCCCCceeeeecCCCCCCeEEEeCCCCCCccCCCCCeeecC----ChhHHHHH
Q 026500 42 EIDEALINSQIDIAV--HS--MKDVPTYLPEKTILPCNLQREDVRDAFISLSAASLAELPAGSIVGTA----SLRRKSQI 113 (237)
Q Consensus 42 eLe~aLl~g~iDiAV--HS--lKDlP~~l~~gL~iaav~~R~dprD~LV~~~~~~l~~Lp~ga~IGTS----S~RR~aql 113 (237)
....||.+|+||+-. |- |..-= .-..|..+.++.+-.-.-=.+-|++++++++||.|++|+-+ -.=|.-.|
T Consensus 45 ~pN~AL~~G~iDaN~fQH~pyL~~~~-k~~~g~~lv~v~~~~~~P~glYS~k~ksl~dl~~Ga~IaIPnDptN~~RaL~l 123 (249)
T 4got_A 45 MYNKALADKEVDANYFQHIPYLEQEM-KENTDYKLVNAGAVHLEPFGIYSKTYKSLKDLPDGATIILTNNVAEQGRMLAM 123 (249)
T ss_dssp HHHHHHHTTSCSEEEEEEHHHHHHHH-HHCTTCCEEEEEEEEECCCEEECSSCSSGGGCCTTCEEEEECCGGGHHHHHHH
T ss_pred chhHHHHcCCcceeeccCHHHHHHHH-HhCCCCceEEeeeeeeccccccccCcCchhhcCCCCEEEEecCccchHHHHHH
Confidence 467999999999987 41 11000 01124444444322222234557888999999999999853 34466666
Q ss_pred HHhCC-----------------------CCeEEeccCCCHHHHHHhhccCCccEEeee-----cccccccCCCCcceeee
Q 026500 114 LHRYP-----------------------SLKVMENFRGNVQTRLRKLNERVVQATLLA-----LAGLKRLSMTENVTNIL 165 (237)
Q Consensus 114 ~~~~p-----------------------dl~v~~~iRGNV~TRL~KL~~ge~DaiILA-----~AGL~RLgl~~~i~~~l 165 (237)
+...- +++|+ ++-.. +=-+-|.+.+.|+.|+- .|||.-.. +-+ .+
T Consensus 124 L~~aGLIkLk~~~~~~~~t~~DI~~Npk~l~~~-e~~aa--ql~r~l~d~~vD~avin~n~a~~agl~p~~--dal--~~ 196 (249)
T 4got_A 124 LENAGLITLDSKVETVDATLKDIKKNPKNLEFK-KVAPE--LTAKAYENKEGDAVFINVNYAIQNKLNPKK--DAI--EV 196 (249)
T ss_dssp HHHTTSCEECTTSCGGGCCGGGEEECTTCCEEE-EECTT--THHHHHHTTCSSEEEECHHHHHHTTCCHHH--HCS--EE
T ss_pred HHHCCCEEECCCCCccccCcchhhhCCccccce-ecCHh--HhhhhcccccccEEEechhHHHHcCCChhh--hhh--cc
Confidence 65432 24444 33322 12234567788988873 45654210 111 11
Q ss_pred cCCCCCCCCCCceEEEEEecC---chhhhhhhcccccccc
Q 026500 166 SVDDMLPAVAQGAIGIACRSN---DEKMVPFTTHSQASIL 202 (237)
Q Consensus 166 ~~~~~lPA~GQGalave~R~~---d~~~~~~l~~~~~~~~ 202 (237)
+... .-+=+..+.+|++ ++.+..+.+.+++...
T Consensus 197 E~~~----~~py~Nvivvr~~d~d~~~ik~lv~a~~s~ev 232 (249)
T 4got_A 197 ESTK----NNPYANIIAVRKGEEDSAKIKALMEVLHSKKI 232 (249)
T ss_dssp CCST----TCCCCEEEEEETTCTTSHHHHHHHHHHTSHHH
T ss_pred cCCC----CCceEEEEEEcccccCCHHHHHHHHHHCCHHH
Confidence 1100 0112455667764 4566777777665433
No 94
>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*
Probab=22.44 E-value=1.1e+02 Score=26.70 Aligned_cols=50 Identities=12% Similarity=0.022 Sum_probs=39.2
Q ss_pred eeecCChhHHHHHHHhCCCCeEEeccCCCHHHHHHhhccCCccEEeeeccc
Q 026500 101 IVGTASLRRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAG 151 (237)
Q Consensus 101 ~IGTSS~RR~aql~~~~pdl~v~~~iRGNV~TRL~KL~~ge~DaiILA~AG 151 (237)
+|+|.|.+|...++.+--+.-+- .-..++..+++++..|.+|.++=+..+
T Consensus 192 Vi~~~~~~~~~~~~~lGa~~vi~-~~~~~~~~~v~~~t~g~~d~v~d~~g~ 241 (371)
T 3gqv_A 192 PIATCSPHNFDLAKSRGAEEVFD-YRAPNLAQTIRTYTKNNLRYALDCITN 241 (371)
T ss_dssp EEEEECGGGHHHHHHTTCSEEEE-TTSTTHHHHHHHHTTTCCCEEEESSCS
T ss_pred EEEEeCHHHHHHHHHcCCcEEEE-CCCchHHHHHHHHccCCccEEEECCCc
Confidence 78898999988888877665554 555788899999988889998876554
No 95
>1uth_A LYSR-type regulatory protein; transcription regulation, transcriptional regulator; 2.2A {Burkholderia SP} SCOP: c.94.1.1 PDB: 1utb_A 1utb_B 1uth_B 2uyf_A 2uye_A
Probab=22.07 E-value=50 Score=27.40 Aligned_cols=48 Identities=13% Similarity=0.175 Sum_probs=36.1
Q ss_pred CeeecCCh-------hHHHHHHHhCCCCeEEeccCCCHHHHHHhhccCCccEEeee
Q 026500 100 SIVGTASL-------RRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLA 148 (237)
Q Consensus 100 a~IGTSS~-------RR~aql~~~~pdl~v~~~iRGNV~TRL~KL~~ge~DaiILA 148 (237)
-+||+++. +--.++...+|++++. -.-++-+.-+..|.+|++|..|..
T Consensus 107 l~Ig~~~~~~~~~l~~~l~~f~~~~P~v~l~-l~~~~~~~~~~~l~~g~~Dl~i~~ 161 (315)
T 1uth_A 107 FNLAMTDIGEMYFMPPLMEALAQRAPHIQIS-TLRPNAGNLKEDMESGAVDLALGL 161 (315)
T ss_dssp EEEECCHHHHHHHHHHHHHHHHHHCTTCEEE-EECTTSSCHHHHHHHTSCCEEEEC
T ss_pred EEEEechHHHHHHHHHHHHHHHHHCCCcEEE-EEeCCcccHHHHHHCCCCCEEEec
Confidence 37888742 2235677889999997 677776667788889999988864
No 96
>2y7p_A LYSR-type regulatory protein; transcription regulator, DNA-binding, transcription, transcr factor, transcription regulation; HET: SAL PEU; 1.85A {Burkholderia SP} PDB: 2y7k_A* 2y84_A 2y7w_A 2y7r_A
Probab=21.73 E-value=44 Score=26.00 Aligned_cols=18 Identities=17% Similarity=0.351 Sum_probs=15.6
Q ss_pred HHHHHHHhcCCccEEEee
Q 026500 41 KEIDEALINSQIDIAVHS 58 (237)
Q Consensus 41 keLe~aLl~g~iDiAVHS 58 (237)
.++.++|.+|++|+|+-.
T Consensus 47 ~~l~~~L~~g~iDl~i~~ 64 (218)
T 2y7p_A 47 GNLKEDMESGAVDLALGL 64 (218)
T ss_dssp TTHHHHHHHTSSCEEEEC
T ss_pred ccHHHHHhCCCceEEEec
Confidence 468899999999999964
No 97
>3cvg_A Putative metal binding protein; PSI-II, NYSGXRC, periplasmic, structural GENO protein structure initiative; 1.97A {Coccidioides immitis}
Probab=21.73 E-value=83 Score=26.58 Aligned_cols=49 Identities=10% Similarity=0.236 Sum_probs=36.6
Q ss_pred CeeecCChhH-------HHHHHHh---C--CCCeEEeccCCCHHHHHHhhccCCccEEeeec
Q 026500 100 SIVGTASLRR-------KSQILHR---Y--PSLKVMENFRGNVQTRLRKLNERVVQATLLAL 149 (237)
Q Consensus 100 a~IGTSS~RR-------~aql~~~---~--pdl~v~~~iRGNV~TRL~KL~~ge~DaiILA~ 149 (237)
-+||++|.-= ..+.++. + |+++|. -..||-.+=+++|.+|++|-.+.+.
T Consensus 22 L~Ig~~~~~~~~~lp~ll~~F~~~~~~~~~P~v~v~-l~~~~s~~l~~~l~~G~~Dl~i~~~ 82 (294)
T 3cvg_A 22 LRIGNGGAGQSGLVKELADAFIKSKVDSGSAPFKVA-WYKSDTTVTINYLKDGIVDVGITYS 82 (294)
T ss_dssp EEEEESHHHHHTHHHHHHHHHHHHHHSCC---CEEE-EEECCHHHHHHHHHTTSCSEEEESC
T ss_pred EEEEeccchhHHHHHHHHHHHHhhhcccCCCCeEEE-EEeCCHHHHHHHHHcCCCcEEEEcC
Confidence 3789666432 3455667 8 999998 8899999999999999999877753
No 98
>1rq8_A Conserved hypothetical protein; structural genomics, SAV1595, YHBY, UPF0044, unknown function; NMR {Staphylococcus aureus} SCOP: d.68.4.1
Probab=21.49 E-value=40 Score=25.82 Aligned_cols=25 Identities=36% Similarity=0.733 Sum_probs=21.8
Q ss_pred ccccccCcccc---cHHHHHHHHhcCCc
Q 026500 28 QPLADIGGKGL---FTKEIDEALINSQI 52 (237)
Q Consensus 28 ~~L~~iggkGl---FtkeLe~aLl~g~i 52 (237)
.|...||..|+ +++||++||-+.+.
T Consensus 18 kpvv~IGK~GlTe~vi~ei~~aL~~hEL 45 (104)
T 1rq8_A 18 DPIFQIGKGGINENMIKQIDDTLENREL 45 (104)
T ss_dssp CCSCEECSSSCCHHHHHHHHHHHHHSSE
T ss_pred CCeEEECCCCCCHHHHHHHHHHHHHCCc
Confidence 58889999998 69999999998774
No 99
>2fyi_A HTH-type transcriptional regulator CBL; Lys-R family, cofactor-binding DO cysteine biosynthesis; 2.80A {Escherichia coli K12} SCOP: c.94.1.1
Probab=21.41 E-value=48 Score=25.65 Aligned_cols=104 Identities=11% Similarity=0.001 Sum_probs=53.2
Q ss_pred HHHHHHHHhcCCccEEEeeCCCCCCCCCCCceeeeecCCCCCCeEEEeCCC-------CCCccCCCCCeeecC---ChhH
Q 026500 40 TKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLSA-------ASLAELPAGSIVGTA---SLRR 109 (237)
Q Consensus 40 tkeLe~aLl~g~iDiAVHSlKDlP~~l~~gL~iaav~~R~dprD~LV~~~~-------~~l~~Lp~ga~IGTS---S~RR 109 (237)
..++.++|.+|++|+|+-.. |...++++....+ ..++.-++++++. .++++|..-..|..+ +.|+
T Consensus 52 ~~~~~~~l~~g~~Dl~i~~~---~~~~~~~l~~~~l--~~~~~~~v~~~~hpla~~~~i~~~dL~~~~~i~~~~~~~~~~ 126 (228)
T 2fyi_A 52 PQEIATLLQNGEADIGIASE---RLSNDPQLVAFPW--FRWHHSLLVPHDHPLTQISPLTLESIAKWPLITYRQGITGRS 126 (228)
T ss_dssp HHHHHHHHHHTSCSEEEESS---SSTTCTTEEEEEE--EEECEEEEEETTCGGGTSSSCCHHHHTTSCEEEECTTSTTHH
T ss_pred HHHHHHHHHcCCccEEEEec---ccCCCCCceEEEe--eecceEEEecCCCCccccCccCHHHHcCCCeEEecCCccHHH
Confidence 35788999999999999753 1112345543221 2233333333321 234555444555432 2333
Q ss_pred H--HHHHHhCCCCeEEeccCCCHHHHHHhhccCCccEEeeecc
Q 026500 110 K--SQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALA 150 (237)
Q Consensus 110 ~--aql~~~~pdl~v~~~iRGNV~TRL~KL~~ge~DaiILA~A 150 (237)
. ..+....-..++. -.-.|.++-+.-+.+|.. ..+++..
T Consensus 127 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~lv~~G~G-ia~lp~~ 167 (228)
T 2fyi_A 127 RIDDAFARKGLLADIV-LSAQDSDVIKTYVALGLG-IGLVAEQ 167 (228)
T ss_dssp HHHHHHHHTTCCCCEE-EEESSHHHHHHHHHHTSC-EEEEEGG
T ss_pred HHHHHHHHcCCCcceE-EEeCCHHHHHHHHHhCCC-EEEeehH
Confidence 2 1223333233444 334688888888888743 3345543
No 100
>3oxn_A Putative transcriptional regulator, LYSR family; structural genomics, PSI-2, protein structure initiative; 2.70A {Vibrio parahaemolyticus}
Probab=21.31 E-value=62 Score=25.10 Aligned_cols=102 Identities=13% Similarity=0.014 Sum_probs=53.8
Q ss_pred HHHHHHHhcCCccEEEeeCCCCCCCCCCCceeeeecCCCCCCeEEEeCCC------CCCccCCCCCeeecCCh-hHHHHH
Q 026500 41 KEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLSA------ASLAELPAGSIVGTASL-RRKSQI 113 (237)
Q Consensus 41 keLe~aLl~g~iDiAVHSlKDlP~~l~~gL~iaav~~R~dprD~LV~~~~------~~l~~Lp~ga~IGTSS~-RR~aql 113 (237)
.++.++|.+|++|+++..... .++++....+ ..++.-++++++. .++++|..-..|..+.. .-..++
T Consensus 58 ~~~~~~l~~g~~Dl~i~~~~~----~~~~~~~~~l--~~~~~~~v~~~~hpl~~~~i~~~dL~~~~~i~~~~~~~~~~~~ 131 (241)
T 3oxn_A 58 DRLSDQLTYEGADLAICRPTG----PVEPLRSEIL--GRVGVLCLLSKQHPLANQEMSLDDYLSHPHAMIAISDGVKALI 131 (241)
T ss_dssp GGHHHHHHTSCCSEEEECCSS----CCTTEEEEEE--ECCCEEEEEETTSGGGGSCCCHHHHHTSEEEECSCCHHHHHHH
T ss_pred ccHHHHHHcCCCCEEEecCCC----CCccceeEEe--ecccEEEEEeCCCCcccCCCCHHHHhcCCeEEEecCCCccchh
Confidence 478899999999999986432 3556654333 3455555554432 23344444444443322 112223
Q ss_pred HHhC---CCCeEEeccCCCHHHHHHhhccCCccEEeeecc
Q 026500 114 LHRY---PSLKVMENFRGNVQTRLRKLNERVVQATLLALA 150 (237)
Q Consensus 114 ~~~~---pdl~v~~~iRGNV~TRL~KL~~ge~DaiILA~A 150 (237)
...+ ...++. -.-.|+.+=+.-+.+|..= .++...
T Consensus 132 ~~~~~~~~~~~~~-~~~~~~~~~~~~v~~g~gi-ailp~~ 169 (241)
T 3oxn_A 132 EQALIDKPQRKMV-LRAYHLEAALAIVDTLPII-ITVPAD 169 (241)
T ss_dssp HHHSTTSCCCEEE-EECSSTHHHHHHC--CCCE-EEEEHH
T ss_pred HHHHHhhccceEE-EECCcHHHHHHHHhCCCeE-EEcHHH
Confidence 2222 344444 4557888888888887543 344433
No 101
>3ho7_A OXYR; beta-alpha-barrels, DNA-binding, transcription, transcriptio regulation; 1.58A {Porphyromonas gingivalis}
Probab=20.20 E-value=74 Score=24.16 Aligned_cols=96 Identities=13% Similarity=0.053 Sum_probs=51.1
Q ss_pred HHHHHHHHhcCCccEEEeeCCCCCCCCCCCceeeeecCCCCCCeEEEeCCC-------CCCccCCCCCeeecC---ChhH
Q 026500 40 TKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFISLSA-------ASLAELPAGSIVGTA---SLRR 109 (237)
Q Consensus 40 tkeLe~aLl~g~iDiAVHSlKDlP~~l~~gL~iaav~~R~dprD~LV~~~~-------~~l~~Lp~ga~IGTS---S~RR 109 (237)
+.++.++|.+|++|+++-....- ++++....+. .++--++++++. .++++|..-..|..+ +.|+
T Consensus 49 ~~~~~~~l~~g~~Dl~i~~~~~~----~~~l~~~~l~--~~~~~~v~~~~hpl~~~~~~~~~dL~~~~~i~~~~~~~~~~ 122 (232)
T 3ho7_A 49 TSRCLASLLSGEIDMAIIASKAE----TEGLEDDLLY--YEEFLGYVSRCEPLFEQDVIRTTEVNPHRLWLLDEGHCFRD 122 (232)
T ss_dssp HHHHHHHHHHTSCSEEEESSCCC----CTTEEEEEEE--EEEEEEEECTTSGGGGSSSBCGGGCCGGGBCCCTTTTTTTS
T ss_pred HHHHHHHHHcCCCCEEEEcCCCC----CCCeEEEEec--ccCEEEEEcCCCccccCCCcCHHHhcCCCEEEecCCCcHHH
Confidence 56899999999999999875321 2455433222 233333333221 235555443333322 2222
Q ss_pred -HHHHHH-hCCC-CeEEeccCCCHHHHHHhhccCCc
Q 026500 110 -KSQILH-RYPS-LKVMENFRGNVQTRLRKLNERVV 142 (237)
Q Consensus 110 -~aql~~-~~pd-l~v~~~iRGNV~TRL~KL~~ge~ 142 (237)
-.++.. .... .++. -.-.|.++-+.-+.+|..
T Consensus 123 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~g~g 157 (232)
T 3ho7_A 123 QLVRFCQMKGLHERQTA-YSGGSMEAFMRLVESGQG 157 (232)
T ss_dssp TTHHHHTCTTTTCSSEE-EESCCHHHHHHHHHTTCC
T ss_pred HHHHHHHHcCCCcCcee-EEeCCHHHHHHHHHcCCc
Confidence 122222 2222 4454 455789999988888854
Done!