RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 026500
         (237 letters)



>d1pdaa1 c.94.1.1 (A:3-219) Porphobilinogen deaminase
           (hydroxymethylbilane synthase), N-terminal domain
           {Escherichia coli [TaxId: 562]}
          Length = 217

 Score =  148 bits (374), Expect = 4e-45
 Identities = 93/189 (49%), Positives = 122/189 (64%), Gaps = 5/189 (2%)

Query: 2   ALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKD 61
           A HP L     +++V + T GD IL  PLA +GGKGLF KE++ AL+ ++ DIAVHSMKD
Sbjct: 27  ASHPGLV----VELVPMVTRGDVILDTPLAKVGGKGLFVKELEVALLENRADIAVHSMKD 82

Query: 62  VPTYLPEKTILPCNLQREDVRDAFISLSAASLAELPAGSIVGTASLRRKSQILHRYPSLK 121
           VP   P+   L    +RED RDAF+S +  SL  LPAGSIVGT+SLRR+ Q+  R P   
Sbjct: 83  VPVEFPQGLGLVTICEREDPRDAFVSNNYDSLDALPAGSIVGTSSLRRQCQLAERRPD-L 141

Query: 122 VMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPAVAQGAIGI 181
           ++ + RGNV TRL KL+     A +LA+AGLKRL +   +   L  +  LPAV QGA+GI
Sbjct: 142 IIRSLRGNVGTRLSKLDNGEYDAIILAVAGLKRLGLESRIRAALPPEISLPAVGQGAVGI 201

Query: 182 ACRSNDEKM 190
            CR +D + 
Sbjct: 202 ECRLDDSRT 210


>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus
          musculus) [TaxId: 10090]}
          Length = 52

 Score = 28.1 bits (63), Expect = 0.13
 Identities = 9/35 (25%), Positives = 14/35 (40%)

Query: 36 KGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKT 70
          KG +TKE D+ LI             +  +L  + 
Sbjct: 3  KGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRI 37


>d1zyba2 b.82.3.2 (A:1-147) Probable transcription regulator BT4300,
           N-terminal domain {Bacteroides thetaiotaomicron [TaxId:
           818]}
          Length = 147

 Score = 26.1 bits (56), Expect = 2.6
 Identities = 8/30 (26%), Positives = 11/30 (36%), Gaps = 2/30 (6%)

Query: 112 QILHRYPSLKVMENFRGNVQTRLRKLNERV 141
             L RY       N+   V  R + L  R+
Sbjct: 117 SDLFRYD--IFRLNYMNIVSNRAQNLYSRL 144


>d2oz6a2 b.82.3.2 (A:9-142) Cyclic AMP receptor-like protein Vfr
           {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 134

 Score = 25.5 bits (55), Expect = 3.5
 Identities = 6/36 (16%), Positives = 13/36 (36%), Gaps = 2/36 (5%)

Query: 112 QILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLL 147
           ++  +   +  +      +  RLRK   +V     L
Sbjct: 101 ELSQQDSEI--LYTLGSQMADRLRKTTRKVGDLAFL 134


>d1o5la1 b.82.3.2 (A:1-129) CRP-like transcriptional regulator
           TM1171, N-terminal domain {Thermotoga maritima [TaxId:
           2336]}
          Length = 129

 Score = 25.3 bits (54), Expect = 4.0
 Identities = 7/35 (20%), Positives = 15/35 (42%), Gaps = 2/35 (5%)

Query: 112 QILHRYPSLKVMENFRGNVQTRLRKLNERVVQATL 146
            +L +   L  +  F  +V    R ++E++   T 
Sbjct: 96  DLLMKDREL--LLFFLKDVSEHFRVVSEKLFFLTT 128


>d1v53a1 c.77.1.1 (A:1-356) 3-isopropylmalate dehydrogenase, IPMDH
           {Bacillus coagulans [TaxId: 1398]}
          Length = 356

 Score = 25.1 bits (54), Expect = 9.7
 Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 2/46 (4%)

Query: 4   HPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALIN 49
             + A   AI+  +     D   +  L    GK + T E+ + LI 
Sbjct: 310 LEKEAA--AIEKAVDDVLQDGYCTGDLQVANGKVVSTIELTDRLIE 353


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.135    0.380 

Gapped
Lambda     K      H
   0.267   0.0490    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 809,588
Number of extensions: 34616
Number of successful extensions: 64
Number of sequences better than 10.0: 1
Number of HSP's gapped: 63
Number of HSP's successfully gapped: 10
Length of query: 237
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 154
Effective length of database: 1,268,006
Effective search space: 195272924
Effective search space used: 195272924
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.0 bits)