BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026503
(237 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FE7|A Chain A, The Crystal Structure Of A Probable N-Acetyltransferase
From Pseudomonas Aeruginosa
pdb|2FE7|B Chain B, The Crystal Structure Of A Probable N-Acetyltransferase
From Pseudomonas Aeruginosa
Length = 166
Score = 87.8 bits (216), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 44/90 (48%), Positives = 58/90 (64%)
Query: 140 GFVLFFPNYSTFLAKPGFYIEDIFVRECYRRKGFGRILLSAVAKQAVKMGYGRVEWIVLD 199
G+ +FF +YST+L + G Y+ED++V YR G GR LL +A++AV GR+EW VLD
Sbjct: 72 GYAVFFYSYSTWLGRNGIYLEDLYVTPEYRGVGAGRRLLRELAREAVANDCGRLEWSVLD 131
Query: 200 WNVNAIKFYEEMGAKVLSEWRICRLTGDAL 229
WN AI FY +GA EW RL G+AL
Sbjct: 132 WNQPAIDFYRSIGALPQDEWVRYRLDGEAL 161
>pdb|2BEI|A Chain A, X-Ray Structure Of Thialysine N-Acetyltransferase (Ssat2)
From Homo Sapiens
pdb|2BEI|B Chain B, X-Ray Structure Of Thialysine N-Acetyltransferase (Ssat2)
From Homo Sapiens
pdb|2Q4V|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Thialysine N- Acetyltransferase (Ssat2) From Homo
Sapiens
pdb|2Q4V|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
Thialysine N- Acetyltransferase (Ssat2) From Homo
Sapiens
Length = 170
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 85/199 (42%), Gaps = 43/199 (21%)
Query: 33 RIRLATPADVPHIHKLIHQMAVFEKLTHLFSATESSLAATLFNSPPFTSFTVLLLEVXXX 92
RIR A D I +LI ++A FEKL+ +E +L A F PF + L+ E+
Sbjct: 5 RIREAKEGDCGDILRLIRELAEFEKLSDQVKISEEALRADGFGDNPF--YHCLVAEI--- 59
Query: 93 XXXXXXXXXXXXXXXXXVDRIVYLDLPLDDPDRETFASDETHDVTVAGFVLFFPNYSTFL 152
LP A + V G+ +++ YST+
Sbjct: 60 -------------------------LP---------APGKLLGPCVVGYGIYYFIYSTWK 85
Query: 153 AKPGFYIEDIFVRECYRRKGFGRILLSAVAKQAVKMGYGRVEWIVLDWNVNAIKFYEEMG 212
+ Y+EDI+V YR +G G ++ VA+ A+ G + VLDWN A Y+ +G
Sbjct: 86 GRT-IYLEDIYVXPEYRGQGIGSKIIKKVAEVALDKGCSQFRLAVLDWNQRAXDLYKALG 144
Query: 213 AKVLSE---WRICRLTGDA 228
A+ L+E W G+A
Sbjct: 145 AQDLTEAEGWHFFCFQGEA 163
>pdb|3BJ7|A Chain A, SpermineSPERMIDINE N1-Acetyltransferase From Mouse:
Crystal Structure Of A Ternary Complex Reveals
Solvent-Mediated Spermine Binding
pdb|3BJ7|B Chain B, SpermineSPERMIDINE N1-Acetyltransferase From Mouse:
Crystal Structure Of A Ternary Complex Reveals
Solvent-Mediated Spermine Binding
pdb|3BJ7|C Chain C, SpermineSPERMIDINE N1-Acetyltransferase From Mouse:
Crystal Structure Of A Ternary Complex Reveals
Solvent-Mediated Spermine Binding
pdb|3BJ7|D Chain D, SpermineSPERMIDINE N1-Acetyltransferase From Mouse:
Crystal Structure Of A Ternary Complex Reveals
Solvent-Mediated Spermine Binding
pdb|3BJ8|A Chain A, SpermineSPERMIDINE N1-Acetyltransferase From Mouse:
Crystal Structure Of A Ternary Complex Reveals
Solvent-Mediated Spermine Binding
pdb|3BJ8|B Chain B, SpermineSPERMIDINE N1-Acetyltransferase From Mouse:
Crystal Structure Of A Ternary Complex Reveals
Solvent-Mediated Spermine Binding
pdb|3BJ8|C Chain C, SpermineSPERMIDINE N1-Acetyltransferase From Mouse:
Crystal Structure Of A Ternary Complex Reveals
Solvent-Mediated Spermine Binding
pdb|3BJ8|D Chain D, SpermineSPERMIDINE N1-Acetyltransferase From Mouse:
Crystal Structure Of A Ternary Complex Reveals
Solvent-Mediated Spermine Binding
Length = 171
Score = 57.4 bits (137), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 84/200 (42%), Gaps = 43/200 (21%)
Query: 33 RIRLATPADVPHIHKLIHQMAVFEKLTHLFSATESSLAATLFNSPPFTSFTVLLLEVXXX 92
+IR AT +D I +LI ++A +E + TE L F PF + L+ EV
Sbjct: 5 KIRPATASDCSDILRLIKELAKYEYMEDQVILTEKDLQEDGFGEHPF--YHCLVAEVP-- 60
Query: 93 XXXXXXXXXXXXXXXXXVDRIVYLDLPLDDPDRETFASDETHDVTVAGFVLFFPNYSTFL 152
+ + E H ++ GF +++ Y ++
Sbjct: 61 ---------------------------------KEHWTPEGH--SIVGFAMYYFTYDPWI 85
Query: 153 AKPGFYIEDIFVRECYRRKGFGRILLSAVAKQAVKMGYGRVEWIVLDWNVNAIKFYEEMG 212
K Y+ED FV YR G G +L +++ A+K + ++V +WN +I FY+ G
Sbjct: 86 GKL-LYLEDFFVMSDYRGFGIGSEILKNLSQVAMKCRCSSMHFLVAEWNEPSINFYKRRG 144
Query: 213 AKVLSE---WRICRLTGDAL 229
A LS WR+ ++ + L
Sbjct: 145 ASDLSSEEGWRLFKIDKEYL 164
>pdb|2JEV|A Chain A, Crystal Structure Of Human Spermine,Spermidine
Acetyltransferase In Complex With A Bisubstrate Analog
(N1- Acetylspermine-S-Coa).
pdb|2JEV|B Chain B, Crystal Structure Of Human Spermine,Spermidine
Acetyltransferase In Complex With A Bisubstrate Analog
(N1- Acetylspermine-S-Coa)
Length = 174
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 83/199 (41%), Gaps = 43/199 (21%)
Query: 34 IRLATPADVPHIHKLIHQMAVFEKLTHLFSATESSLAATLFNSPPFTSFTVLLLEVXXXX 93
IR AT AD I +LI ++A +E + TE L F PF + L+ EV
Sbjct: 9 IRPATAADCSDILRLIKELAKYEYMEEQVILTEKDLLEDGFGEHPF--YHCLVAEVP--- 63
Query: 94 XXXXXXXXXXXXXXXXVDRIVYLDLPLDDPDRETFASDETHDVTVAGFVLFFPNYSTFLA 153
+ + E H ++ GF +++ Y ++
Sbjct: 64 --------------------------------KEHWTPEGH--SIVGFAMYYFTYDPWIG 89
Query: 154 KPGFYIEDIFVRECYRRKGFGRILLSAVAKQAVKMGYGRVEWIVLDWNVNAIKFYEEMGA 213
K Y+ED FV YR G G +L +++ A++ + ++V +WN +I FY+ GA
Sbjct: 90 KL-LYLEDFFVMSDYRGFGIGSEILKNLSQVAMRCRCSSMHFLVAEWNEPSINFYKRRGA 148
Query: 214 KVLSE---WRICRLTGDAL 229
LS WR+ ++ + L
Sbjct: 149 SDLSSEEGWRLFKIDKEYL 167
>pdb|2FXF|A Chain A, Human SpermidineSPERMINE N1-Acetyltransferase
pdb|2FXF|B Chain B, Human SpermidineSPERMINE N1-Acetyltransferase
Length = 170
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 83/199 (41%), Gaps = 43/199 (21%)
Query: 34 IRLATPADVPHIHKLIHQMAVFEKLTHLFSATESSLAATLFNSPPFTSFTVLLLEVXXXX 93
IR AT AD I +LI ++A +E + TE L F PF + L+ EV
Sbjct: 5 IRPATAADCSDILRLIKELAKYEYMEEQVILTEKDLLEDGFGEHPF--YHCLVAEVP--- 59
Query: 94 XXXXXXXXXXXXXXXXVDRIVYLDLPLDDPDRETFASDETHDVTVAGFVLFFPNYSTFLA 153
+ + E H ++ GF +++ Y ++
Sbjct: 60 --------------------------------KEHWTPEGH--SIVGFAMYYFTYDPWIG 85
Query: 154 KPGFYIEDIFVRECYRRKGFGRILLSAVAKQAVKMGYGRVEWIVLDWNVNAIKFYEEMGA 213
K Y+ED FV YR G G +L +++ A++ + ++V +WN +I FY+ GA
Sbjct: 86 KL-LYLEDFFVMSDYRGFGIGSEILKNLSQVAMRCRCSSMHFLVAEWNEPSINFYKRRGA 144
Query: 214 KVLSE---WRICRLTGDAL 229
LS WR+ ++ + L
Sbjct: 145 SDLSSEEGWRLFKIDKEYL 163
>pdb|2F5I|A Chain A, X-Ray Structure Of SpermidineSPERMINE N1-Acetyltransferase
(Sat) From Homo Sapiens
pdb|2F5I|B Chain B, X-Ray Structure Of SpermidineSPERMINE N1-Acetyltransferase
(Sat) From Homo Sapiens
pdb|2G3T|A Chain A, Crsytal Structure Of Human SpermidineSPERMINE N1-
Acetyltransferase (Hssat)
pdb|2G3T|B Chain B, Crsytal Structure Of Human SpermidineSPERMINE N1-
Acetyltransferase (Hssat)
Length = 179
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 83/199 (41%), Gaps = 43/199 (21%)
Query: 34 IRLATPADVPHIHKLIHQMAVFEKLTHLFSATESSLAATLFNSPPFTSFTVLLLEVXXXX 93
IR AT AD I +LI ++A +E + TE L F PF + L+ EV
Sbjct: 6 IRPATAADCSDILRLIKELAKYEYMEEQVILTEKDLLEDGFGEHPF--YHCLVAEVP--- 60
Query: 94 XXXXXXXXXXXXXXXXVDRIVYLDLPLDDPDRETFASDETHDVTVAGFVLFFPNYSTFLA 153
+ + E H ++ GF +++ Y ++
Sbjct: 61 --------------------------------KEHWTPEGH--SIVGFAMYYFTYDPWIG 86
Query: 154 KPGFYIEDIFVRECYRRKGFGRILLSAVAKQAVKMGYGRVEWIVLDWNVNAIKFYEEMGA 213
K Y+ED FV YR G G +L +++ A++ + ++V +WN +I FY+ GA
Sbjct: 87 KL-LYLEDFFVMSDYRGFGIGSEILKNLSQVAMRCRCSSMHFLVAEWNEPSINFYKRRGA 145
Query: 214 KVLSE---WRICRLTGDAL 229
LS WR+ ++ + L
Sbjct: 146 SDLSSEEGWRLFKIDKEYL 164
>pdb|2B4D|A Chain A, Ssat+coa+sp- Sp Disordered
pdb|2B5G|A Chain A, Wild Type Ssat- 1.7a Structure
Length = 171
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 79/199 (39%), Gaps = 43/199 (21%)
Query: 34 IRLATPADVPHIHKLIHQMAVFEKLTHLFSATESSLAATLFNSPPFTSFTVLLLEVXXXX 93
IR AT AD I +LI ++A +E TE L F PF + L+ EV
Sbjct: 6 IRPATAADCSDILRLIKELAKYEYXEEQVILTEKDLLEDGFGEHPF--YHCLVAEVP--- 60
Query: 94 XXXXXXXXXXXXXXXXVDRIVYLDLPLDDPDRETFASDETHDVTVAGFVLFFPNYSTFLA 153
+ + E H ++ GF ++ Y ++
Sbjct: 61 --------------------------------KEHWTPEGH--SIVGFAXYYFTYDPWIG 86
Query: 154 KPGFYIEDIFVRECYRRKGFGRILLSAVAKQAVKMGYGRVEWIVLDWNVNAIKFYEEMGA 213
K Y+ED FV YR G G +L +++ A + ++V +WN +I FY+ GA
Sbjct: 87 KL-LYLEDFFVXSDYRGFGIGSEILKNLSQVAXRCRCSSXHFLVAEWNEPSINFYKRRGA 145
Query: 214 KVLSE---WRICRLTGDAL 229
LS WR+ ++ + L
Sbjct: 146 SDLSSEEGWRLFKIDKEYL 164
>pdb|2B3U|A Chain A, Human Spermine Spermidine Acetyltransferase K26r Mutant
pdb|2B3U|B Chain B, Human Spermine Spermidine Acetyltransferase K26r Mutant
pdb|2B3V|A Chain A, Spermine Spermidine Acetyltransferase In Complex With
Acetylcoa, K26r Mutant
pdb|2B4B|A Chain A, Ssat+coa+be-3-3-3, K6r Mutant
pdb|2B4B|B Chain B, Ssat+coa+be-3-3-3, K6r Mutant
pdb|2B58|A Chain A, Ssat With Coa_sp, Spermine Disordered, K26r Mutant
Length = 171
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 79/199 (39%), Gaps = 43/199 (21%)
Query: 34 IRLATPADVPHIHKLIHQMAVFEKLTHLFSATESSLAATLFNSPPFTSFTVLLLEVXXXX 93
IR AT AD I +LI ++A +E TE L F PF + L+ EV
Sbjct: 6 IRPATAADCSDILRLIKELARYEYXEEQVILTEKDLLEDGFGEHPF--YHCLVAEVP--- 60
Query: 94 XXXXXXXXXXXXXXXXVDRIVYLDLPLDDPDRETFASDETHDVTVAGFVLFFPNYSTFLA 153
+ + E H ++ GF ++ Y ++
Sbjct: 61 --------------------------------KEHWTPEGH--SIVGFAXYYFTYDPWIG 86
Query: 154 KPGFYIEDIFVRECYRRKGFGRILLSAVAKQAVKMGYGRVEWIVLDWNVNAIKFYEEMGA 213
K Y+ED FV YR G G +L +++ A + ++V +WN +I FY+ GA
Sbjct: 87 KL-LYLEDFFVXSDYRGFGIGSEILKNLSQVAXRCRCSSXHFLVAEWNEPSINFYKRRGA 145
Query: 214 KVLSE---WRICRLTGDAL 229
LS WR+ ++ + L
Sbjct: 146 SDLSSEEGWRLFKIDKEYL 164
>pdb|2B4D|B Chain B, Ssat+coa+sp- Sp Disordered
pdb|2B5G|B Chain B, Wild Type Ssat- 1.7a Structure
Length = 171
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 79/199 (39%), Gaps = 43/199 (21%)
Query: 34 IRLATPADVPHIHKLIHQMAVFEKLTHLFSATESSLAATLFNSPPFTSFTVLLLEVXXXX 93
IR AT AD I +LI ++A +E TE L F PF + L+ EV
Sbjct: 6 IRPATAADCSDILRLIKELAXYEYXEEQVILTEKDLLEDGFGEHPF--YHCLVAEVP--- 60
Query: 94 XXXXXXXXXXXXXXXXVDRIVYLDLPLDDPDRETFASDETHDVTVAGFVLFFPNYSTFLA 153
+ + E H ++ GF ++ Y ++
Sbjct: 61 --------------------------------KEHWTPEGH--SIVGFAXYYFTYDPWIG 86
Query: 154 KPGFYIEDIFVRECYRRKGFGRILLSAVAKQAVKMGYGRVEWIVLDWNVNAIKFYEEMGA 213
K Y+ED FV YR G G +L +++ A + ++V +WN +I FY+ GA
Sbjct: 87 KL-LYLEDFFVXSDYRGFGIGSEILKNLSQVAXRCRCSSXHFLVAEWNEPSINFYKRRGA 145
Query: 214 KVLSE---WRICRLTGDAL 229
LS WR+ ++ + L
Sbjct: 146 SDLSSEEGWRLFKIDKEYL 164
>pdb|3I9S|A Chain A, Structure From The Mobile Metagenome Of V.Cholerae.
Integron Cassette Protein Vch_cass6
pdb|3I9S|B Chain B, Structure From The Mobile Metagenome Of V.Cholerae.
Integron Cassette Protein Vch_cass6
pdb|3I9S|C Chain C, Structure From The Mobile Metagenome Of V.Cholerae.
Integron Cassette Protein Vch_cass6
pdb|3I9S|D Chain D, Structure From The Mobile Metagenome Of V.Cholerae.
Integron Cassette Protein Vch_cass6
Length = 183
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 4/93 (4%)
Query: 142 VLFFPNYSTFLAKPGF----YIEDIFVRECYRRKGFGRILLSAVAKQAVKMGYGRVEWIV 197
VL F Y+ P Y +D+FV R KG G L +A A+ R++W
Sbjct: 85 VLGFATYTIXFPAPKLSGQXYXKDLFVSSSARGKGIGLQLXKHLATIAITHNCQRLDWTA 144
Query: 198 LDWNVNAIKFYEEMGAKVLSEWRICRLTGDALD 230
N A KFY+ +GA ++ E R G+ L+
Sbjct: 145 ESTNPTAGKFYKSIGASLIREKEYYRFEGNGLN 177
>pdb|1WK4|A Chain A, Crystal Structure Of Ttk003001606
pdb|1WK4|B Chain B, Crystal Structure Of Ttk003001606
pdb|1WK4|C Chain C, Crystal Structure Of Ttk003001606
pdb|2CY2|A Chain A, Crystal Structure Of Ttha1209 In Complex With Acetyl
Coenzyme A
Length = 174
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 50/109 (45%), Gaps = 7/109 (6%)
Query: 123 PDRETFASDETHDVTVAGFVLFFPNYSTFLAKPGFYIE--DIFVRECYRRKGFGRILLSA 180
P R A E+ +V GF F P+ ++ PG+ E I+V ++RKG GR L
Sbjct: 57 PGRLFVAESESGEVV--GFAAFGPDRASGF--PGYTAELWAIYVLPTWQRKGLGRALFHE 112
Query: 181 VAKQAVKMGYGRVEWIVLDWNVNAIKFYEEMGAKVLSEWRICRLTGDAL 229
A+ GYGR VL N FYE +G +L E R L G L
Sbjct: 113 GARLLQAEGYGRXLVWVLKENPKGRGFYEHLGGVLLGE-REIELGGAKL 160
>pdb|1QSO|A Chain A, Histone Acetyltransferase Hpa2 From Saccharomyces
Cerevisiae
pdb|1QSO|B Chain B, Histone Acetyltransferase Hpa2 From Saccharomyces
Cerevisiae
pdb|1QSO|C Chain C, Histone Acetyltransferase Hpa2 From Saccharomyces
Cerevisiae
pdb|1QSO|D Chain D, Histone Acetyltransferase Hpa2 From Saccharomyces
Cerevisiae
Length = 149
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 2/95 (2%)
Query: 122 DPDRETFASD--ETHDVTVAGFVLFFPNYSTFLAKPGFYIEDIFVRECYRRKGFGRILLS 179
DP+ + +A+ E+ + G + FF + +T+ K YI D++V E R KG G L+
Sbjct: 44 DPNIKMWAAVAVESSSEKIIGMINFFNHMTTWDFKDKIYINDLYVDENSRVKGAGGKLIQ 103
Query: 180 AVAKQAVKMGYGRVEWIVLDWNVNAIKFYEEMGAK 214
V +A K+G V W + N A Y ++G K
Sbjct: 104 FVYDEADKLGTPSVYWCTDESNHRAQLLYVKVGYK 138
>pdb|1QSM|A Chain A, Histone Acetyltransferase Hpa2 From Saccharomyces
Cerevisiae In Complex With Acetyl Coenzyme A
pdb|1QSM|B Chain B, Histone Acetyltransferase Hpa2 From Saccharomyces
Cerevisiae In Complex With Acetyl Coenzyme A
pdb|1QSM|C Chain C, Histone Acetyltransferase Hpa2 From Saccharomyces
Cerevisiae In Complex With Acetyl Coenzyme A
pdb|1QSM|D Chain D, Histone Acetyltransferase Hpa2 From Saccharomyces
Cerevisiae In Complex With Acetyl Coenzyme A
Length = 152
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 41/83 (49%)
Query: 132 ETHDVTVAGFVLFFPNYSTFLAKPGFYIEDIFVRECYRRKGFGRILLSAVAKQAVKMGYG 191
E+ + G + FF + +T+ K YI D++V E R KG G L+ V +A K+G
Sbjct: 59 ESSSEKIIGMINFFNHMTTWDFKDKIYINDLYVDENSRVKGAGGKLIQFVYDEADKLGTP 118
Query: 192 RVEWIVLDWNVNAIKFYEEMGAK 214
V W + N A Y ++G K
Sbjct: 119 SVYWCTDESNHRAQLLYVKVGYK 141
>pdb|3PP9|A Chain A, 1.6 Angstrom Resolution Crystal Structure Of Putative
Streptothricin Acetyltransferase From Bacillus Anthracis
Str. Ames In Complex With Acetyl Coenzyme A
pdb|3PP9|B Chain B, 1.6 Angstrom Resolution Crystal Structure Of Putative
Streptothricin Acetyltransferase From Bacillus Anthracis
Str. Ames In Complex With Acetyl Coenzyme A
pdb|3PP9|C Chain C, 1.6 Angstrom Resolution Crystal Structure Of Putative
Streptothricin Acetyltransferase From Bacillus Anthracis
Str. Ames In Complex With Acetyl Coenzyme A
Length = 187
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 7/76 (9%)
Query: 138 VAGFVLFFPNYSTFLAKPGFYIEDIFVRECYRRKGFGRILLSAVAKQAVKMGYG-RVEWI 196
+ GF++ N++ + YIEDI V + YR G G+ L+ A AKQ K G +
Sbjct: 87 IIGFIVLKKNWNNYA-----YIEDITVDKKYRTLGVGKRLI-AQAKQWAKEGNXPGIXLE 140
Query: 197 VLDWNVNAIKFYEEMG 212
+ NV A KFYE+ G
Sbjct: 141 TQNNNVAACKFYEKCG 156
>pdb|4F6A|A Chain A, High-Resolution X-Ray Structure Of The Tetramutant Of
Bh1408 Protein From Bacillus Halodurans, Northeast
Structural Genomics Consortium (Nesg) Target Bhr182
pdb|4F6A|B Chain B, High-Resolution X-Ray Structure Of The Tetramutant Of
Bh1408 Protein From Bacillus Halodurans, Northeast
Structural Genomics Consortium (Nesg) Target Bhr182
Length = 156
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 31/73 (42%)
Query: 146 PNYSTFLAKPGFYIEDIFVRECYRRKGFGRILLSAVAKQAVKMGYGRVEWIVLDWNVNAI 205
P T + YI D+ V E R G GR++ A+ +E V D+N A
Sbjct: 78 PLLPTXQQRKTVYISDLCVDETRRGGGIGRLIFEAIISYGKAHQVDAIELDVYDFNERAK 137
Query: 206 KFYEEMGAKVLSE 218
+FY +G + +
Sbjct: 138 RFYHSLGXRCQKQ 150
>pdb|4E0A|A Chain A, Crystal Structure Of The Mutant F44r Bh1408 Protein From
Bacillus Halodurans, Northeast Structural Genomics
Consortium (Nesg) Target Bhr182
pdb|4E0A|B Chain B, Crystal Structure Of The Mutant F44r Bh1408 Protein From
Bacillus Halodurans, Northeast Structural Genomics
Consortium (Nesg) Target Bhr182
Length = 164
Score = 35.8 bits (81), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 30/73 (41%)
Query: 146 PNYSTFLAKPGFYIEDIFVRECYRRKGFGRILLSAVAKQAVKMGYGRVEWIVLDWNVNAI 205
P T + YI D+ V E R G GR++ A+ +E V D+N A
Sbjct: 78 PLLPTXQQRKTVYISDLCVDETRRGGGIGRLIFEAIISYGKAHQVDAIELDVYDFNDRAK 137
Query: 206 KFYEEMGAKVLSE 218
FY +G + +
Sbjct: 138 AFYHSLGXRCQKQ 150
>pdb|1I12|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Gna1
Complexed With Accoa
pdb|1I12|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Gna1
Complexed With Accoa
pdb|1I12|C Chain C, Crystal Structure Of Saccharomyces Cerevisiae Gna1
Complexed With Accoa
pdb|1I12|D Chain D, Crystal Structure Of Saccharomyces Cerevisiae Gna1
Complexed With Accoa
Length = 160
Score = 34.7 bits (78), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 7/57 (12%)
Query: 158 YIEDIFVRECYRRKGFGRILLSAVAKQAVKMG--YGRVEWIVLDWNVNAIKFYEEMG 212
+IEDI V Y+ +G G++L+ Q V +G YG + I+LD + +KFYE+ G
Sbjct: 97 HIEDIAVNSKYQGQGLGKLLID----QLVTIGFDYGCYK-IILDCDEKNVKFYEKCG 148
>pdb|1I21|A Chain A, Crystal Structure Of Yeast Gna1
pdb|1I21|B Chain B, Crystal Structure Of Yeast Gna1
pdb|1I21|M Chain M, Crystal Structure Of Yeast Gna1
pdb|1I21|N Chain N, Crystal Structure Of Yeast Gna1
pdb|1I21|X Chain X, Crystal Structure Of Yeast Gna1
pdb|1I21|Y Chain Y, Crystal Structure Of Yeast Gna1
Length = 159
Score = 34.7 bits (78), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 7/57 (12%)
Query: 158 YIEDIFVRECYRRKGFGRILLSAVAKQAVKMG--YGRVEWIVLDWNVNAIKFYEEMG 212
+IEDI V Y+ +G G++L+ Q V +G YG + I+LD + +KFYE+ G
Sbjct: 96 HIEDIAVNSKYQGQGLGKLLID----QLVTIGFDYGCYK-IILDCDEKNVKFYEKCG 147
>pdb|1I1D|A Chain A, Crystal Structure Of Yeast Gna1 Bound To Coa And Glnac-6p
pdb|1I1D|B Chain B, Crystal Structure Of Yeast Gna1 Bound To Coa And Glnac-6p
pdb|1I1D|C Chain C, Crystal Structure Of Yeast Gna1 Bound To Coa And Glnac-6p
pdb|1I1D|D Chain D, Crystal Structure Of Yeast Gna1 Bound To Coa And Glnac-6p
Length = 161
Score = 34.7 bits (78), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 7/57 (12%)
Query: 158 YIEDIFVRECYRRKGFGRILLSAVAKQAVKMG--YGRVEWIVLDWNVNAIKFYEEMG 212
+IEDI V Y+ +G G++L+ Q V +G YG + I+LD + +KFYE+ G
Sbjct: 98 HIEDIAVNSKYQGQGLGKLLID----QLVTIGFDYGCYK-IILDCDEKNVKFYEKCG 149
>pdb|1Q2Y|A Chain A, Crystal Structure Of The Protein Yjcf From Bacillus
Subtilis: A Member Of The Gcn5-Related
N-Acetyltransferase Superfamily Fold
Length = 140
Score = 34.3 bits (77), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 159 IEDIFVRECYRRKGFGRILLSAVAKQAVKMGYGRVEWIVLDWNVNAIKFYEEMGAKVLSE 218
+E I V + +R G G I++ A+ K A G +L+ A+ FY++ G +VLSE
Sbjct: 68 LERICVLKSHRSAGVGGIIMKALEKAAAD---GGASGFILNAQTQAVPFYKKHGYRVLSE 124
>pdb|3JVN|A Chain A, Crystal Structure Of The Acetyltransferase Vf_1542 From
Vibrio Fischeri, Northeast Structural Genomics
Consortium Target Vfr136
Length = 166
Score = 34.3 bits (77), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
Query: 120 LDDPDRETFASDETHDVTVAGFVLFFPNYSTFLAK--PGFYIEDIFVRECYRRKGFGRIL 177
LDDP+ + + E DV + F + ++K I+++++ + YRR+G L
Sbjct: 51 LDDPECXVYVA-EXDDVIIGFITGHFCELISTVSKLVXXATIDELYIEKEYRREGVAEQL 109
Query: 178 LSAVAKQAVKMGYGRVEWIVLDWNVNAIKFYEEMG 212
+ ++ G + V D+N A++FY + G
Sbjct: 110 XXRIEQELKDYGVKEIFVEVWDFNKGALEFYNKQG 144
>pdb|3LD2|A Chain A, The Crystal Structure Of Smu.2055 From Streptococcus
Mutans Ua159
pdb|3LD2|B Chain B, The Crystal Structure Of Smu.2055 From Streptococcus
Mutans Ua159
pdb|3LD2|C Chain C, The Crystal Structure Of Smu.2055 From Streptococcus
Mutans Ua159
pdb|3LD2|D Chain D, The Crystal Structure Of Smu.2055 From Streptococcus
Mutans Ua159
Length = 197
Score = 34.3 bits (77), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 162 IFVRECYRRKGFGRILLSAVAKQAVKMGYGRVEWIVLDWNVNAIKFYEEMG 212
I V E RRKG GR L+ + VK Y +V VL N A+ FY+++G
Sbjct: 115 IAVAEKERRKGIGRALVQIFLNE-VKSDYQKVLIHVLSSNQEAVLFYKKLG 164
>pdb|2DXQ|A Chain A, Putative Acetyltransferase From Agrobacterium Tumefaciens
Str. C58
pdb|2DXQ|B Chain B, Putative Acetyltransferase From Agrobacterium Tumefaciens
Str. C58
Length = 150
Score = 33.9 bits (76), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 9/97 (9%)
Query: 120 LDDPDRETFASDETHDVTVAGFVLFFPNYSTFLAKPGFYIEDIFVRECYRRKGFGRILLS 179
L P F + E +L PN T A+P +IE++ E R +G+GR
Sbjct: 46 LAQPGLTIFVATENGKPVATATLLIVPNL-TRAARPYAFIENVVTLEARRGRGYGRT--- 101
Query: 180 AVAKQAVKMGYG----RVEWIVLDWNVNAIKFYEEMG 212
V + A++ +G +V + + FYE G
Sbjct: 102 -VVRHAIETAFGANCYKVXLLTGRHDPAVHAFYESCG 137
>pdb|1TIQ|A Chain A, Crystal Structure Of An Acetyltransferase (Paia) In
Complex With Coa And Dtt From Bacillus Subtilis,
Northeast Structural Genomics Target Sr64.
pdb|1TIQ|B Chain B, Crystal Structure Of An Acetyltransferase (Paia) In
Complex With Coa And Dtt From Bacillus Subtilis,
Northeast Structural Genomics Target Sr64
Length = 180
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%)
Query: 159 IEDIFVRECYRRKGFGRILLSAVAKQAVKMGYGRVEWIVLDWNVNAIKFYEEMG 212
IE I+++ +++ G G+ LL+ + A++ + V + N NAI FY++ G
Sbjct: 93 IERIYIKNSFQKHGLGKHLLNKAIEIALERNKKNIWLGVWEKNENAIAFYKKXG 146
>pdb|3FB3|A Chain A, Crystal Structure Of Trypanosoma Brucei Acetyltransferase,
Tb11.01.2886
pdb|3FB3|B Chain B, Crystal Structure Of Trypanosoma Brucei Acetyltransferase,
Tb11.01.2886
pdb|3I3G|A Chain A, Crystal Structure Of Trypanosoma Brucei
N-Acetyltransferase (Tb11.01.2886) At 1.86a
pdb|3I3G|B Chain B, Crystal Structure Of Trypanosoma Brucei
N-Acetyltransferase (Tb11.01.2886) At 1.86a
Length = 161
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
Query: 126 ETFASDETHDVTVAGFVLFFPNYSTFLAKPGFYIEDIFVRECYRRKGFGRILLSAVAKQA 185
+ F T + + ++ P ++ G +IED+ V YR G G+ L+ + + +
Sbjct: 67 KVFCHQPTGRIVGSASLMIQPKFTRGGRAVG-HIEDVVVDPSYRGAGLGKALIMDLCEIS 125
Query: 186 VKMGYGRVEWIVLDWNVNAIKFYEEMG 212
G +V +LD + ++ FYE++G
Sbjct: 126 RSKGCYKV---ILDSSEKSLPFYEKLG 149
>pdb|3EFA|A Chain A, Crystal Structure Of Putative N-acetyltransferase From
Lactobacillus Plantarum
Length = 147
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 162 IFVRECYRRKGFGRILLSAVAKQAVKMGYGRVEWIVLDWNVNAIKFYEEMGAKVLS 217
+ R+ YR G+GR LL+A + A + G+ E + + A +FYE G +V +
Sbjct: 77 VCTRKAYRGHGWGRQLLTAAEEWATQRGFTHGE---IHGELTAQRFYELCGYRVTA 129
>pdb|1YVK|A Chain A, Crystal Structure Of The Bacillis Subtilis
Acetyltransferase In Complex With Coa, Northeast
Structural Genomics Target Sr237.
pdb|1YVK|B Chain B, Crystal Structure Of The Bacillis Subtilis
Acetyltransferase In Complex With Coa, Northeast
Structural Genomics Target Sr237.
pdb|1YVK|C Chain C, Crystal Structure Of The Bacillis Subtilis
Acetyltransferase In Complex With Coa, Northeast
Structural Genomics Target Sr237.
pdb|1YVK|D Chain D, Crystal Structure Of The Bacillis Subtilis
Acetyltransferase In Complex With Coa, Northeast
Structural Genomics Target Sr237
Length = 163
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 34/57 (59%)
Query: 159 IEDIFVRECYRRKGFGRILLSAVAKQAVKMGYGRVEWIVLDWNVNAIKFYEEMGAKV 215
I +I V+E ++KGFG+ L+ ++A K+G +E + +++ + Y++ G ++
Sbjct: 66 IVNIAVKESLQKKGFGKQLVLDAIEKAKKLGADTIEIGTGNSSIHQLSLYQKCGFRI 122
>pdb|2GE3|A Chain A, Crystal Structure Of Probable Acetyltransferase From
Agrobacterium Tumefaciens
pdb|2GE3|B Chain B, Crystal Structure Of Probable Acetyltransferase From
Agrobacterium Tumefaciens
pdb|2GE3|C Chain C, Crystal Structure Of Probable Acetyltransferase From
Agrobacterium Tumefaciens
pdb|2GE3|D Chain D, Crystal Structure Of Probable Acetyltransferase From
Agrobacterium Tumefaciens
Length = 170
Score = 31.2 bits (69), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 21/46 (45%)
Query: 167 CYRRKGFGRILLSAVAKQAVKMGYGRVEWIVLDWNVNAIKFYEEMG 212
YR KG G L A + G R+E V N AI YE++G
Sbjct: 96 AYRNKGLGARLXRRTLDAAHEFGLHRIELSVHADNARAIALYEKIG 141
>pdb|2AE6|A Chain A, Crystal Structure Of Acetyltransferase Of Gnat Family From
Enterococcus Faecalis V583
pdb|2AE6|B Chain B, Crystal Structure Of Acetyltransferase Of Gnat Family From
Enterococcus Faecalis V583
pdb|2AE6|C Chain C, Crystal Structure Of Acetyltransferase Of Gnat Family From
Enterococcus Faecalis V583
pdb|2AE6|D Chain D, Crystal Structure Of Acetyltransferase Of Gnat Family From
Enterococcus Faecalis V583
Length = 166
Score = 30.8 bits (68), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 138 VAGFVLFFPNYSTFLAKPGFYIEDIFVRECYRRKGFGRILLSAVAKQAVKMGYGRVEWIV 197
+AGF+ P ++ A ++ I V ++ +G G LLS + A G ++ V
Sbjct: 64 LAGFIEVHPP-TSLAAHQKQWLLSIGVSPDFQDQGIGGSLLSYIKDXAEISGIHKLSLRV 122
Query: 198 LDWNVNAIKFYEEMG 212
N AI+FYE+ G
Sbjct: 123 XATNQEAIRFYEKHG 137
>pdb|3JQW|A Chain A, Crystal Structure Of Clostridium Histolyticum Colh
Collagenase Collagen-Binding Domain 3 At 2 Angstrom
Resolution In Presence Of Calcium
pdb|3JQW|B Chain B, Crystal Structure Of Clostridium Histolyticum Colh
Collagenase Collagen-Binding Domain 3 At 2 Angstrom
Resolution In Presence Of Calcium
pdb|3JQW|C Chain C, Crystal Structure Of Clostridium Histolyticum Colh
Collagenase Collagen-Binding Domain 3 At 2 Angstrom
Resolution In Presence Of Calcium
pdb|3JQX|A Chain A, Crystal Structure Of Clostridium Histolyticum Colh
Collagenase Collagen Binding Domain 3 At 2.2 Angstrom
Resolution In The Presence Of Calcium And Cadmium
pdb|3JQX|B Chain B, Crystal Structure Of Clostridium Histolyticum Colh
Collagenase Collagen Binding Domain 3 At 2.2 Angstrom
Resolution In The Presence Of Calcium And Cadmium
pdb|3JQX|C Chain C, Crystal Structure Of Clostridium Histolyticum Colh
Collagenase Collagen Binding Domain 3 At 2.2 Angstrom
Resolution In The Presence Of Calcium And Cadmium
Length = 121
Score = 30.4 bits (67), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 187 KMGYGRVEWIVLDWNVNAIKFYEEMGAKVLSEWR 220
K+GYG W+V D N NA+ + + G + +++
Sbjct: 57 KLGYGGATWVVYDENNNAVSYATDDGQNLSGKFK 90
>pdb|2EUI|A Chain A, Crystal Structure Of A Probable Acetyltransferase
pdb|2EUI|B Chain B, Crystal Structure Of A Probable Acetyltransferase
pdb|2EUI|D Chain D, Crystal Structure Of A Probable Acetyltransferase
pdb|2EUI|E Chain E, Crystal Structure Of A Probable Acetyltransferase
Length = 153
Score = 30.4 bits (67), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 13/110 (11%)
Query: 111 DRIVYLDLPLDDPDRETFASDETHDVTVAGFVLFFPNYSTFLAKPGFYIEDIFVRECYRR 170
+ ++YL L D+ DR + GF +P++S+ K + + DI+V E RR
Sbjct: 46 ESVIYLALA-DEEDR------------LLGFCQLYPSFSSLSLKRVWILNDIYVAEEARR 92
Query: 171 KGFGRILLSAVAKQAVKMGYGRVEWIVLDWNVNAIKFYEEMGAKVLSEWR 220
+ LL + A + R N A K YE +G + E++
Sbjct: 93 QLVADHLLQHAKQXARETHAVRXRVSTSVDNEVAQKVYESIGFREDQEFK 142
>pdb|3T90|A Chain A, Crystal Structure Of Glucosamine-6-Phosphate
N-Acetyltransferase From Arabidopsis Thaliana
Length = 149
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Query: 136 VTVAGFVLFFPNYSTFLAKPGFYIEDIFVRECYRRKGFGRILLSAVAKQAVKMGYGRVEW 195
+ G V+ + K G +IED+ V +R K G+ ++ + MG +V
Sbjct: 64 IAATGSVMIEKKFLRNCGKAG-HIEDVVVDSRFRGKQLGKKVVEFLMDHCKSMGCYKV-- 120
Query: 196 IVLDWNVNAIKFYEEMG 212
+LD +V FYE+ G
Sbjct: 121 -ILDCSVENKVFYEKCG 136
>pdb|2J8M|A Chain A, Structure Of P. Aeruginosa Acetyltransferase Pa4866
pdb|2J8M|B Chain B, Structure Of P. Aeruginosa Acetyltransferase Pa4866
pdb|2J8N|A Chain A, Structure Of P. Aeruginosa Acetyltransferase Pa4866 Solved
At Room Temperature
pdb|2J8N|B Chain B, Structure Of P. Aeruginosa Acetyltransferase Pa4866 Solved
At Room Temperature
pdb|2J8R|A Chain A, Structure Of P. Aeruginosa Acetyltransferase Pa4866 Solved
In Complex With L-Methionine Sulfoximine
pdb|2J8R|B Chain B, Structure Of P. Aeruginosa Acetyltransferase Pa4866 Solved
In Complex With L-Methionine Sulfoximine
Length = 172
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 138 VAGFVLFFPNYSTFLAKPGFY--IE-DIFVRECYRRKGFGRILLSAVAKQAVKMGYGRVE 194
AG VL + +Y + GF +E ++VR+ R KG G LL A+ ++A G +
Sbjct: 61 AAGEVLGYASYGDWRPFEGFRGTVEHSVYVRDDQRGKGLGVQLLQALIERARAQGLHVMV 120
Query: 195 WIVLDWNVNAIKFYEEMGAKVLSE 218
+ N +I + +G ++ +
Sbjct: 121 AAIESGNAASIGLHRRLGFEISGQ 144
>pdb|3F8K|A Chain A, Crystal Structure Of Protein Acetyltransferase (Pat) From
Sulfolobus Solfataricus
Length = 160
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%)
Query: 162 IFVRECYRRKGFGRILLSAVAKQAVKMGYGRVEWIVLDWNVNAIKFYEEMGAK 214
+ V YR G G +L+ + ++A K G V++ L N IK ++G K
Sbjct: 79 LVVHRNYRTLGIGTLLVKTLIEEAKKSGLSTVKFYTLPENTPXIKIGRKLGFK 131
>pdb|1YVO|A Chain A, Hypothetical Acetyltransferase From P.Aeruginosa Pa01
pdb|1YVO|B Chain B, Hypothetical Acetyltransferase From P.Aeruginosa Pa01
Length = 172
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
Query: 138 VAGFVLFFPNYSTFLAKPGFY--IE-DIFVRECYRRKGFGRILLSAVAKQAVKMGYGRVE 194
AG VL + +Y + GF +E ++VR+ R KG G LL A+ ++A G
Sbjct: 61 AAGEVLGYASYGDWRPFEGFRGTVEHSVYVRDDQRGKGLGVQLLQALIERARAQGLHVXV 120
Query: 195 WIVLDWNVNAIKFYEEMGAKVLSE 218
+ N +I + +G ++ +
Sbjct: 121 AAIESGNAASIGLHRRLGFEISGQ 144
>pdb|1UFH|A Chain A, Structure Of Putative Acetyltransferase, Yycn Protein Of
Bacillus Subtilis
pdb|1UFH|B Chain B, Structure Of Putative Acetyltransferase, Yycn Protein Of
Bacillus Subtilis
Length = 180
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%)
Query: 158 YIEDIFVRECYRRKGFGRILLSAVAKQAVKMGYGRVEWIVLDWNVNAIKFYEEMG 212
+I D + E YR KG+ + L+A+ + A MG ++ V N A K YE+ G
Sbjct: 114 FIYDFGLYEPYRGKGYAKQALAALDQAARSMGIRKLSLHVFAHNQTARKLYEQTG 168
>pdb|2BL1|A Chain A, Crystal Structure Of A Putative Phosphinothricin
Acetyltransferase (Pa4866) From Pseudomonas Aeruginosa
Pac1
Length = 172
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
Query: 138 VAGFVLFFPNYSTFLAKPGFY--IE-DIFVRECYRRKGFGRILLSAVAKQAVKMGYGRVE 194
AG VL + +Y + GF +E ++VR+ R KG G LL A+ ++A G
Sbjct: 61 AAGEVLGYASYGDWRPFEGFRGTVEHSVYVRDDQRGKGLGVQLLQALIERARAQGLHVXV 120
Query: 195 WIVLDWNVNAIKFYEEMGAKVLSE 218
+ N +I + +G ++ +
Sbjct: 121 AAIESGNAASIGLHRRLGFEISGQ 144
>pdb|1Z4E|A Chain A, Crystal Structure Of Transcriptional Regulator From
Bacillus Halodurans C-125
pdb|1Z4E|B Chain B, Crystal Structure Of Transcriptional Regulator From
Bacillus Halodurans C-125
Length = 153
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Query: 142 VLFFPNYSTFLAKPGFYIEDIFVRECYRRKGFGRILLSAVAKQAVKMGYGRVEWIVLDWN 201
V F P Y T+ IE + R +G G L+ ++A + G ++
Sbjct: 72 VTFTP-YLTYQGSWRATIEGVRTHSAARGQGIGSQLVCWAIERAKERGCHLIQLTTDKQR 130
Query: 202 VNAIKFYEEMGAKVLSE 218
+A++FYE++G K E
Sbjct: 131 PDALRFYEQLGFKASHE 147
>pdb|1URJ|A Chain A, Single Stranded Dna-Binding Protein(Icp8) From Herpes
Simplex Virus-1
pdb|1URJ|B Chain B, Single Stranded Dna-Binding Protein(Icp8) From Herpes
Simplex Virus-1
Length = 1136
Score = 27.7 bits (60), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 118 LPLDDPDRETFASDETHDVTVAGFVLFFPNYSTFLAKP 155
L L D+ T E H + V LF P++S +A+P
Sbjct: 176 LHLGGSDKVTIGGAEVHRIPVYPLQLFMPDFSRVIAEP 213
>pdb|2X7B|A Chain A, Crystal Structure Of The N-Terminal Acetylase Ard1 From
Sulfolobus Solfataricus P2
Length = 168
Score = 26.9 bits (58), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 51/111 (45%), Gaps = 21/111 (18%)
Query: 135 DVTVAGFVL-----FFPNYSTF--LAKPGFYIEDIFVRECYRRKGFGRILLSAVAKQAVK 187
D +V G+++ F N L + G ++ I V E YRRKG LL A K ++K
Sbjct: 60 DNSVVGYIMPRIEWGFSNIKQLPSLVRKG-HVVSIAVLEEYRRKGIATTLLEASMK-SMK 117
Query: 188 MGYGRVEWIVLDWNVN---AIKFYEEMGAKVLSEWRICRLTG---DALDAY 232
Y E I L+ V+ AI YE++ K ++ L G D DAY
Sbjct: 118 NDYN-AEEIYLEVRVSNYPAIALYEKLNFK-----KVKVLKGYYADGEDAY 162
>pdb|3EO4|A Chain A, The Crystal Structure Of A Domain From Methanocaldococcus
Jannaschii Dsm 2661
pdb|3EO4|B Chain B, The Crystal Structure Of A Domain From Methanocaldococcus
Jannaschii Dsm 2661
pdb|3EO4|C Chain C, The Crystal Structure Of A Domain From Methanocaldococcus
Jannaschii Dsm 2661
pdb|3EO4|D Chain D, The Crystal Structure Of A Domain From Methanocaldococcus
Jannaschii Dsm 2661
Length = 164
Score = 26.9 bits (58), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 171 KGFGRILLSAVAKQAVKMGYGRVEWIVLDWNVNAIKFYEEMGAK 214
K GR +S V K +GY + +L+ N+ +IK +E +G K
Sbjct: 105 KHIGRHSVSLVLKWLKNIGYKKAHARILENNIRSIKLFESLGFK 148
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.139 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,030,496
Number of Sequences: 62578
Number of extensions: 215870
Number of successful extensions: 555
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 523
Number of HSP's gapped (non-prelim): 47
length of query: 237
length of database: 14,973,337
effective HSP length: 96
effective length of query: 141
effective length of database: 8,965,849
effective search space: 1264184709
effective search space used: 1264184709
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)