BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026505
(237 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8WZ42|TITIN_HUMAN Titin OS=Homo sapiens GN=TTN PE=1 SV=4
Length = 34350
Score = 34.3 bits (77), Expect = 0.69, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 15/71 (21%)
Query: 41 DISSSAVSRTRSRIHYDGPAKIAFLFLARRELPLDFLW---------GSFFEIADVE--- 88
+I+ +VS S+ HYDG AKI + RRELP D W ++FE+ ++
Sbjct: 26622 NITRKSVSLKWSKPHYDGGAKITGYIVERRELP-DGRWLKCNYTNIQETYFEVTELTEDQ 26680
Query: 89 --NFSIFIHSA 97
F +F +A
Sbjct: 26681 RYEFRVFARNA 26691
>sp|Q8ZM76|GCSP_SALTY Glycine dehydrogenase [decarboxylating] OS=Salmonella typhimurium
(strain LT2 / SGSC1412 / ATCC 700720) GN=gcvP PE=3 SV=3
Length = 957
Score = 33.5 bits (75), Expect = 1.3, Method: Composition-based stats.
Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 13/104 (12%)
Query: 94 IHSAPGFVFDELTTRSKFFYGRQLSNSIQVAWGESSMIAAERLLLEAALEDPANQRFVLL 153
IH+A G DE TTR QL N V G+S + E L + AL+ + Q+ +L
Sbjct: 416 IHNAVGITLDETTTRENV---AQLFN---VLLGDSHGLNIETLDKDVALDSRSIQQSMLR 469
Query: 154 SDSCV--PIYNFSYVYKYLMASPRSFVDSFLDRKESRYNPKMSP 195
D+ + P++N + +M S L+RK+ N M P
Sbjct: 470 DDAILTHPVFNRYHSETEMMRYMHS-----LERKDLALNQAMIP 508
>sp|C0PY26|GCSP_SALPC Glycine dehydrogenase [decarboxylating] OS=Salmonella paratyphi C
(strain RKS4594) GN=gcvP PE=3 SV=1
Length = 957
Score = 33.5 bits (75), Expect = 1.3, Method: Composition-based stats.
Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 13/104 (12%)
Query: 94 IHSAPGFVFDELTTRSKFFYGRQLSNSIQVAWGESSMIAAERLLLEAALEDPANQRFVLL 153
IH+A G DE TTR QL N V G+S + E L + AL+ + Q+ +L
Sbjct: 416 IHNAVGITLDETTTRENV---AQLFN---VLLGDSHGLNIETLDKDVALDSRSIQQSMLR 469
Query: 154 SDSCV--PIYNFSYVYKYLMASPRSFVDSFLDRKESRYNPKMSP 195
D+ + P++N + +M S L+RK+ N M P
Sbjct: 470 DDAILTHPVFNRYHSETEMMRYMHS-----LERKDLALNQAMIP 508
>sp|A9N3N1|GCSP_SALPB Glycine dehydrogenase [decarboxylating] OS=Salmonella paratyphi B
(strain ATCC BAA-1250 / SPB7) GN=gcvP PE=3 SV=1
Length = 957
Score = 33.5 bits (75), Expect = 1.3, Method: Composition-based stats.
Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 13/104 (12%)
Query: 94 IHSAPGFVFDELTTRSKFFYGRQLSNSIQVAWGESSMIAAERLLLEAALEDPANQRFVLL 153
IH+A G DE TTR QL N V G+S + E L + AL+ + Q+ +L
Sbjct: 416 IHNAVGITLDETTTRENV---AQLFN---VLLGDSHGLNIETLDKDVALDSRSIQQSMLR 469
Query: 154 SDSCV--PIYNFSYVYKYLMASPRSFVDSFLDRKESRYNPKMSP 195
D+ + P++N + +M S L+RK+ N M P
Sbjct: 470 DDAILTHPVFNRYHSETEMMRYMHS-----LERKDLALNQAMIP 508
>sp|B4T548|GCSP_SALNS Glycine dehydrogenase [decarboxylating] OS=Salmonella newport
(strain SL254) GN=gcvP PE=3 SV=1
Length = 957
Score = 33.5 bits (75), Expect = 1.3, Method: Composition-based stats.
Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 13/104 (12%)
Query: 94 IHSAPGFVFDELTTRSKFFYGRQLSNSIQVAWGESSMIAAERLLLEAALEDPANQRFVLL 153
IH+A G DE TTR QL N V G+S + E L + AL+ + Q+ +L
Sbjct: 416 IHNAVGITLDETTTRENV---AQLFN---VLLGDSHGLNIETLDKDVALDSRSIQQSMLR 469
Query: 154 SDSCV--PIYNFSYVYKYLMASPRSFVDSFLDRKESRYNPKMSP 195
D+ + P++N + +M S L+RK+ N M P
Sbjct: 470 DDAILTHPVFNRYHSETEMMRYMHS-----LERKDLALNQAMIP 508
>sp|B5F5H7|GCSP_SALA4 Glycine dehydrogenase [decarboxylating] OS=Salmonella agona (strain
SL483) GN=gcvP PE=3 SV=1
Length = 957
Score = 33.5 bits (75), Expect = 1.3, Method: Composition-based stats.
Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 13/104 (12%)
Query: 94 IHSAPGFVFDELTTRSKFFYGRQLSNSIQVAWGESSMIAAERLLLEAALEDPANQRFVLL 153
IH+A G DE TTR QL N V G+S + E L + AL+ + Q+ +L
Sbjct: 416 IHNAVGITLDETTTRENV---AQLFN---VLLGDSHGLNIETLDKDVALDSRSIQQSMLR 469
Query: 154 SDSCV--PIYNFSYVYKYLMASPRSFVDSFLDRKESRYNPKMSP 195
D+ + P++N + +M S L+RK+ N M P
Sbjct: 470 DDAILTHPVFNRYHSETEMMRYMHS-----LERKDLALNQAMIP 508
>sp|Q8Z3X0|GCSP_SALTI Glycine dehydrogenase [decarboxylating] OS=Salmonella typhi GN=gcvP
PE=3 SV=3
Length = 957
Score = 33.1 bits (74), Expect = 1.6, Method: Composition-based stats.
Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 13/104 (12%)
Query: 94 IHSAPGFVFDELTTRSKFFYGRQLSNSIQVAWGESSMIAAERLLLEAALEDPANQRFVLL 153
IH+A G DE TTR QL N V G+S + E L + AL+ + Q+ +L
Sbjct: 416 IHNAVGITLDETTTRENV---AQLFN---VLLGDSHGLNIETLDKDVALDSRSIQQGMLR 469
Query: 154 SDSCV--PIYNFSYVYKYLMASPRSFVDSFLDRKESRYNPKMSP 195
D+ + P++N + +M S L+RK+ N M P
Sbjct: 470 DDAILTHPVFNRYHSETEMMRYMHS-----LERKDLALNQAMIP 508
>sp|B4TGX3|GCSP_SALHS Glycine dehydrogenase [decarboxylating] OS=Salmonella heidelberg
(strain SL476) GN=gcvP PE=3 SV=1
Length = 957
Score = 32.0 bits (71), Expect = 3.7, Method: Composition-based stats.
Identities = 32/104 (30%), Positives = 47/104 (45%), Gaps = 13/104 (12%)
Query: 94 IHSAPGFVFDELTTRSKFFYGRQLSNSIQVAWGESSMIAAERLLLEAALEDPANQRFVLL 153
IH+A G DE TTR QL N V G S + E L + AL+ + Q+ +L
Sbjct: 416 IHNAVGITLDETTTRENV---AQLFN---VLLGGSHGLNIETLDKDVALDSRSIQQSMLR 469
Query: 154 SDSCV--PIYNFSYVYKYLMASPRSFVDSFLDRKESRYNPKMSP 195
D+ + P++N + +M S L+RK+ N M P
Sbjct: 470 DDAILTHPVFNRYHSETEMMRYMHS-----LERKDLALNQAMIP 508
>sp|B5RE14|GCSP_SALG2 Glycine dehydrogenase [decarboxylating] OS=Salmonella gallinarum
(strain 287/91 / NCTC 13346) GN=gcvP PE=3 SV=1
Length = 957
Score = 32.0 bits (71), Expect = 3.7, Method: Composition-based stats.
Identities = 32/104 (30%), Positives = 47/104 (45%), Gaps = 13/104 (12%)
Query: 94 IHSAPGFVFDELTTRSKFFYGRQLSNSIQVAWGESSMIAAERLLLEAALEDPANQRFVLL 153
IH+A G DE TTR QL N V G S + E L + AL+ + Q+ +L
Sbjct: 416 IHNAVGITLDETTTRENV---AQLFN---VLLGGSHGLNIETLDKDVALDSRSIQQSMLR 469
Query: 154 SDSCV--PIYNFSYVYKYLMASPRSFVDSFLDRKESRYNPKMSP 195
D+ + P++N + +M S L+RK+ N M P
Sbjct: 470 DDAILTHPVFNRYHSETEMMRYMHS-----LERKDLALNQAMIP 508
>sp|B5QXI0|GCSP_SALEP Glycine dehydrogenase [decarboxylating] OS=Salmonella enteritidis
PT4 (strain P125109) GN=gcvP PE=3 SV=1
Length = 957
Score = 32.0 bits (71), Expect = 3.7, Method: Composition-based stats.
Identities = 32/104 (30%), Positives = 47/104 (45%), Gaps = 13/104 (12%)
Query: 94 IHSAPGFVFDELTTRSKFFYGRQLSNSIQVAWGESSMIAAERLLLEAALEDPANQRFVLL 153
IH+A G DE TTR QL N V G S + E L + AL+ + Q+ +L
Sbjct: 416 IHNAVGITLDETTTRENV---AQLFN---VLLGGSHGLNIETLDKDVALDSRSIQQSMLR 469
Query: 154 SDSCV--PIYNFSYVYKYLMASPRSFVDSFLDRKESRYNPKMSP 195
D+ + P++N + +M S L+RK+ N M P
Sbjct: 470 DDAILTHPVFNRYHSETEMMRYMHS-----LERKDLALNQAMIP 508
>sp|B5FUG6|GCSP_SALDC Glycine dehydrogenase [decarboxylating] OS=Salmonella dublin
(strain CT_02021853) GN=gcvP PE=3 SV=1
Length = 957
Score = 32.0 bits (71), Expect = 3.7, Method: Composition-based stats.
Identities = 32/104 (30%), Positives = 47/104 (45%), Gaps = 13/104 (12%)
Query: 94 IHSAPGFVFDELTTRSKFFYGRQLSNSIQVAWGESSMIAAERLLLEAALEDPANQRFVLL 153
IH+A G DE TTR QL N V G S + E L + AL+ + Q+ +L
Sbjct: 416 IHNAVGITLDETTTRENV---AQLFN---VLLGGSHGLNIETLDKDVALDSRSIQQSMLR 469
Query: 154 SDSCV--PIYNFSYVYKYLMASPRSFVDSFLDRKESRYNPKMSP 195
D+ + P++N + +M S L+RK+ N M P
Sbjct: 470 DDAILTHPVFNRYHSETEMMRYMHS-----LERKDLALNQAMIP 508
>sp|Q8IWT3|CUL9_HUMAN Cullin-9 OS=Homo sapiens GN=CUL9 PE=1 SV=2
Length = 2517
Score = 31.6 bits (70), Expect = 5.1, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 142 LEDPANQRFVL-LSDSCVPIYNFSYVYKYLMASPRSFVDSFLDRKESRYNPKMS-PTIPK 199
+EDP+ +L LS C P+ Y+Y P F D+ LDR S Y+ + P +
Sbjct: 1688 IEDPSPAISILVLSPRCWPVSPLCYLYHPRKCLPTEFCDA-LDRFSSFYSQSQNHPVLDM 1746
Query: 200 GKWRKGSQWITLIR 213
G R+ QW L R
Sbjct: 1747 GPHRR-LQWTWLGR 1759
>sp|P10476|GUNA_CELJU Endoglucanase A OS=Cellvibrio japonicus (strain Ueda107) GN=celA
PE=3 SV=2
Length = 962
Score = 31.6 bits (70), Expect = 5.2, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 105 LTTRSKFFYGRQLSNSIQVAWGESSMIAAERLLLEAALEDPANQRFVL 152
LTT+S Y LS S++ WG +S+IA + +L+ A + NQ F L
Sbjct: 445 LTTQSASGYPAPLS-SLEYYWGSNSVIANKLVLMGLAYDFSGNQNFAL 491
>sp|P07866|LTE1_YEAST Guanine nucleotide exchange factor LTE1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=LTE1 PE=1 SV=2
Length = 1435
Score = 31.2 bits (69), Expect = 6.5, Method: Composition-based stats.
Identities = 35/159 (22%), Positives = 69/159 (43%), Gaps = 17/159 (10%)
Query: 30 LVALFRLHLRYDISSSAVSRTRSRIHYDGPAKIAFLFLARRELPLDFLWGSFFEIADVEN 89
L+ +R+H + S+ S + YD + + L +E+ + W ++
Sbjct: 1167 LIGQYRIHDSRLMISNNESHVPFILMYDSLSVAQQMTLIEKEILGEIDWKDLLDLK---- 1222
Query: 90 FSIFIHSAPGFV-FDELTTRSKFFYGRQLSNS---IQVAWGESSMIAAERLLLEAA-LED 144
H P + + +L R++ G L+ S + V W I +E LL +++ ++
Sbjct: 1223 ---MKHEGPQVISWLQLLVRNETLSGIDLAISRFNLTVDW-----IISEILLTKSSKMKR 1274
Query: 145 PANQRFVLLSDSCVPIYNFSYVYKYLMASPRSFVDSFLD 183
QRF+ ++D C NF+ + + ++A S V F D
Sbjct: 1275 NVIQRFIHVADHCRTFQNFNTLMEIILALSSSVVQKFTD 1313
>sp|Q9CHN8|RSMA_LACLA Ribosomal RNA small subunit methyltransferase A OS=Lactococcus
lactis subsp. lactis (strain IL1403) GN=rsmA PE=3 SV=1
Length = 294
Score = 30.8 bits (68), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 27/105 (25%)
Query: 63 AFLFLARRELPLDFLWGSFFEIADVENFSIFIHSAPGFVFDELTTRSKFFYGRQ-LSNSI 121
A L + RRE PL E+ D E F +HS+ F + R+ L N++
Sbjct: 208 AILKMVRREAPL-------VEVEDEEWFFKTMHSS-------------FVHRRKTLMNNL 247
Query: 122 QVAWGESSMIAAERLLLEAAL------EDPANQRFVLLSDSCVPI 160
Q A+G+ S E+LL +A + E + + F L+D+ +P+
Sbjct: 248 QAAFGKESKPEIEKLLAQAEISPTIRGEALSIEEFAKLADALLPL 292
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.328 0.139 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,022,298
Number of Sequences: 539616
Number of extensions: 3235168
Number of successful extensions: 7670
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 7660
Number of HSP's gapped (non-prelim): 25
length of query: 237
length of database: 191,569,459
effective HSP length: 114
effective length of query: 123
effective length of database: 130,053,235
effective search space: 15996547905
effective search space used: 15996547905
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 59 (27.3 bits)